Query 019861
Match_columns 334
No_of_seqs 308 out of 3254
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:07:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.9 2.1E-24 4.6E-29 187.6 17.6 193 115-331 13-238 (238)
2 PF01209 Ubie_methyltran: ubiE 99.9 3.2E-25 6.9E-30 194.6 10.2 193 114-330 8-233 (233)
3 PLN02233 ubiquinone biosynthes 99.9 4.9E-22 1.1E-26 178.1 17.8 159 172-330 68-261 (261)
4 TIGR02752 MenG_heptapren 2-hep 99.8 3.8E-20 8.1E-25 163.3 16.3 163 168-330 36-231 (231)
5 PRK11088 rrmA 23S rRNA methylt 99.8 1.1E-20 2.4E-25 170.6 12.6 170 71-272 2-185 (272)
6 PF13489 Methyltransf_23: Meth 99.8 1.3E-20 2.9E-25 156.3 11.1 133 175-316 20-160 (161)
7 KOG1540 Ubiquinone biosynthesi 99.8 6.1E-20 1.3E-24 156.9 13.4 191 116-330 63-295 (296)
8 PLN02244 tocopherol O-methyltr 99.8 7.3E-19 1.6E-23 163.4 20.8 143 176-319 117-278 (340)
9 PLN02396 hexaprenyldihydroxybe 99.8 4.5E-19 9.8E-24 162.3 14.9 140 176-317 130-287 (322)
10 COG2227 UbiG 2-polyprenyl-3-me 99.8 2.8E-19 6E-24 153.1 11.0 135 176-316 58-212 (243)
11 PRK05785 hypothetical protein; 99.8 9.6E-19 2.1E-23 153.4 13.9 151 178-331 52-225 (226)
12 TIGR00452 methyltransferase, p 99.8 3.9E-18 8.4E-23 155.5 18.0 146 168-319 112-273 (314)
13 PTZ00098 phosphoethanolamine N 99.8 1.2E-17 2.6E-22 149.8 19.0 150 164-319 39-202 (263)
14 PRK11036 putative S-adenosyl-L 99.8 4.1E-18 8.9E-23 152.5 15.6 152 169-324 37-212 (255)
15 PRK15068 tRNA mo(5)U34 methylt 99.8 7.3E-18 1.6E-22 155.2 17.6 149 167-320 112-275 (322)
16 PF08003 Methyltransf_9: Prote 99.8 2.1E-18 4.5E-23 152.8 13.0 150 167-321 105-269 (315)
17 PRK14103 trans-aconitate 2-met 99.8 8.9E-18 1.9E-22 150.3 15.7 148 168-316 20-181 (255)
18 PRK00216 ubiE ubiquinone/menaq 99.8 8.4E-17 1.8E-21 142.3 20.1 164 168-331 42-239 (239)
19 PRK10258 biotin biosynthesis p 99.8 7.2E-17 1.6E-21 144.2 18.2 143 166-314 31-182 (251)
20 PLN02336 phosphoethanolamine N 99.7 8.3E-17 1.8E-21 156.7 19.3 146 166-318 255-413 (475)
21 PLN02490 MPBQ/MSBQ methyltrans 99.7 1.5E-16 3.2E-21 146.3 19.8 133 177-319 113-256 (340)
22 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.2E-17 2.5E-22 148.8 12.0 156 177-332 56-244 (247)
23 KOG1270 Methyltransferases [Co 99.7 1.3E-17 2.9E-22 143.7 10.0 137 178-316 90-246 (282)
24 TIGR00740 methyltransferase, p 99.7 3.2E-17 6.8E-22 145.4 12.3 153 177-329 53-238 (239)
25 PRK08317 hypothetical protein; 99.7 3.3E-16 7.1E-21 138.3 17.8 151 167-319 9-176 (241)
26 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 8E-16 1.7E-20 134.5 20.0 160 171-330 33-223 (223)
27 PRK11873 arsM arsenite S-adeno 99.7 1.1E-15 2.3E-20 138.2 20.5 140 174-317 74-228 (272)
28 COG2230 Cfa Cyclopropane fatty 99.7 1.8E-16 4E-21 140.4 14.9 152 166-322 61-226 (283)
29 PF08241 Methyltransf_11: Meth 99.7 5.8E-17 1.3E-21 122.0 8.9 84 182-266 1-95 (95)
30 PF02353 CMAS: Mycolic acid cy 99.7 1.6E-16 3.4E-21 142.7 12.9 152 165-321 50-219 (273)
31 PRK01683 trans-aconitate 2-met 99.7 5E-16 1.1E-20 139.3 14.4 147 167-314 21-182 (258)
32 smart00828 PKS_MT Methyltransf 99.7 5.3E-16 1.1E-20 136.1 14.3 131 179-321 1-146 (224)
33 PF07021 MetW: Methionine bios 99.7 1.7E-16 3.7E-21 132.2 10.0 146 167-319 5-167 (193)
34 TIGR02072 BioC biotin biosynth 99.7 1.8E-15 4E-20 133.6 14.6 131 177-317 34-174 (240)
35 PRK06202 hypothetical protein; 99.7 2.1E-15 4.5E-20 133.1 14.2 144 174-321 57-224 (232)
36 PRK11207 tellurite resistance 99.6 4.5E-15 9.7E-20 127.6 15.3 130 169-317 22-168 (197)
37 TIGR00477 tehB tellurite resis 99.6 3.6E-15 7.8E-20 128.0 14.4 133 168-318 21-168 (195)
38 KOG4300 Predicted methyltransf 99.6 2.7E-15 5.9E-20 124.7 12.7 155 168-328 67-243 (252)
39 PF13847 Methyltransf_31: Meth 99.6 1.2E-15 2.5E-20 125.8 10.6 132 177-311 3-152 (152)
40 PRK05134 bifunctional 3-demeth 99.6 9.4E-15 2E-19 129.0 16.0 150 167-318 38-204 (233)
41 PF08242 Methyltransf_12: Meth 99.6 8.3E-17 1.8E-21 122.8 0.9 83 182-264 1-99 (99)
42 TIGR02716 C20_methyl_CrtF C-20 99.6 3.7E-14 7.9E-19 130.4 18.1 148 167-317 139-304 (306)
43 PF12847 Methyltransf_18: Meth 99.6 4.4E-15 9.5E-20 115.6 8.9 92 177-268 1-111 (112)
44 PRK12335 tellurite resistance 99.6 3.2E-14 6.9E-19 129.5 15.7 124 177-317 120-257 (287)
45 PLN02585 magnesium protoporphy 99.6 4.1E-14 9E-19 129.3 16.1 149 163-318 127-298 (315)
46 TIGR02081 metW methionine bios 99.6 1.8E-14 3.8E-19 123.7 12.9 146 168-319 6-167 (194)
47 TIGR01983 UbiG ubiquinone bios 99.6 9.7E-14 2.1E-18 121.7 16.9 137 177-318 45-202 (224)
48 TIGR02021 BchM-ChlM magnesium 99.6 4.9E-14 1.1E-18 123.3 14.2 145 167-318 43-205 (219)
49 PRK08287 cobalt-precorrin-6Y C 99.6 2.4E-13 5.2E-18 116.0 17.6 121 167-316 21-153 (187)
50 PRK00107 gidB 16S rRNA methylt 99.6 6.5E-13 1.4E-17 112.8 18.8 109 178-318 46-168 (187)
51 PRK11705 cyclopropane fatty ac 99.5 6.1E-14 1.3E-18 132.1 12.7 149 166-322 156-315 (383)
52 PRK00517 prmA ribosomal protei 99.5 2.3E-13 5E-18 121.4 15.7 125 177-331 119-250 (250)
53 PLN02336 phosphoethanolamine N 99.5 1.1E-13 2.3E-18 134.9 13.9 136 168-316 28-179 (475)
54 TIGR00537 hemK_rel_arch HemK-r 99.5 3.8E-13 8.1E-18 114.0 15.4 126 169-322 11-168 (179)
55 PRK07580 Mg-protoporphyrin IX 99.5 2.9E-13 6.3E-18 119.1 15.0 137 176-319 62-214 (230)
56 PRK04266 fibrillarin; Provisio 99.5 1.3E-12 2.8E-17 114.3 16.0 137 172-330 67-225 (226)
57 TIGR03840 TMPT_Se_Te thiopurin 99.5 8.8E-13 1.9E-17 114.4 14.7 122 176-315 33-183 (213)
58 TIGR00138 gidB 16S rRNA methyl 99.5 1.4E-12 3E-17 110.4 14.7 88 177-268 42-142 (181)
59 PLN02232 ubiquinone biosynthes 99.5 4.5E-13 9.7E-18 111.3 10.9 125 205-329 1-159 (160)
60 TIGR03587 Pse_Me-ase pseudamin 99.5 9.4E-13 2E-17 113.6 12.8 94 177-272 43-146 (204)
61 COG4106 Tam Trans-aconitate me 99.5 3.3E-13 7.2E-18 113.2 9.1 105 167-271 20-132 (257)
62 COG2264 PrmA Ribosomal protein 99.4 3.2E-12 6.9E-17 114.5 15.8 133 166-331 153-300 (300)
63 COG4976 Predicted methyltransf 99.4 8.1E-13 1.8E-17 111.7 10.5 149 155-318 104-264 (287)
64 PRK06922 hypothetical protein; 99.4 1.4E-12 3E-17 127.4 13.7 95 177-271 418-540 (677)
65 PF05401 NodS: Nodulation prot 99.4 4.9E-12 1.1E-16 105.9 14.5 141 172-332 38-198 (201)
66 PRK14967 putative methyltransf 99.4 3.3E-12 7.2E-17 112.0 14.3 152 175-331 34-223 (223)
67 PRK14968 putative methyltransf 99.4 6.9E-12 1.5E-16 106.7 15.8 122 168-317 14-171 (188)
68 PF06325 PrmA: Ribosomal prote 99.4 2.5E-12 5.4E-17 116.2 13.4 132 167-331 153-295 (295)
69 TIGR02469 CbiT precorrin-6Y C5 99.4 2.7E-12 5.9E-17 101.4 11.9 99 168-269 10-123 (124)
70 PRK09489 rsmC 16S ribosomal RN 99.4 9.4E-12 2E-16 115.4 17.3 104 167-270 186-305 (342)
71 PLN03075 nicotianamine synthas 99.4 5.2E-12 1.1E-16 113.5 14.9 130 177-331 123-275 (296)
72 PRK00377 cbiT cobalt-precorrin 99.4 2E-11 4.2E-16 105.1 17.9 99 168-269 31-146 (198)
73 PRK00121 trmB tRNA (guanine-N( 99.4 2.4E-12 5.2E-17 111.1 12.1 95 177-271 40-159 (202)
74 KOG2361 Predicted methyltransf 99.4 1.4E-12 3.1E-17 111.3 10.3 134 179-316 73-234 (264)
75 PRK13255 thiopurine S-methyltr 99.4 5E-12 1.1E-16 110.1 13.7 123 176-316 36-187 (218)
76 PF03848 TehB: Tellurite resis 99.4 3E-12 6.6E-17 108.2 11.7 130 169-316 22-166 (192)
77 PF13649 Methyltransf_25: Meth 99.4 4.8E-13 1E-17 102.3 6.1 82 181-262 1-101 (101)
78 smart00138 MeTrc Methyltransfe 99.4 2.9E-12 6.3E-17 115.0 10.3 92 177-268 99-242 (264)
79 PRK15001 SAM-dependent 23S rib 99.3 2.6E-11 5.7E-16 113.3 15.6 103 166-268 217-340 (378)
80 PTZ00146 fibrillarin; Provisio 99.3 7.5E-11 1.6E-15 105.6 17.8 139 173-330 128-286 (293)
81 TIGR00406 prmA ribosomal prote 99.3 1.3E-11 2.8E-16 112.3 13.2 115 177-322 159-286 (288)
82 COG2242 CobL Precorrin-6B meth 99.3 1E-10 2.2E-15 97.2 16.8 138 164-331 21-178 (187)
83 PRK13944 protein-L-isoaspartat 99.3 1.6E-11 3.5E-16 106.2 12.6 96 167-268 62-173 (205)
84 TIGR03534 RF_mod_PrmC protein- 99.3 4E-11 8.7E-16 106.9 15.3 126 165-318 76-240 (251)
85 PF06080 DUF938: Protein of un 99.3 6.4E-11 1.4E-15 100.4 15.3 153 166-319 15-192 (204)
86 PRK14121 tRNA (guanine-N(7)-)- 99.3 2.6E-11 5.6E-16 112.9 12.9 103 169-271 114-238 (390)
87 PF05175 MTS: Methyltransferas 99.3 1.3E-11 2.9E-16 103.6 10.0 104 167-270 21-142 (170)
88 TIGR03438 probable methyltrans 99.3 1.2E-10 2.5E-15 106.8 16.6 93 177-269 63-178 (301)
89 PF00891 Methyltransf_2: O-met 99.3 6.1E-11 1.3E-15 105.3 13.5 136 168-308 91-241 (241)
90 PRK13942 protein-L-isoaspartat 99.3 4.6E-11 1E-15 103.9 12.4 97 166-268 65-176 (212)
91 PRK11188 rrmJ 23S rRNA methylt 99.3 8.3E-11 1.8E-15 101.9 13.8 95 176-271 50-168 (209)
92 TIGR00091 tRNA (guanine-N(7)-) 99.3 3.6E-11 7.8E-16 103.1 11.1 94 178-271 17-135 (194)
93 KOG1541 Predicted protein carb 99.3 2.4E-11 5.1E-16 102.4 9.4 92 177-270 50-162 (270)
94 PRK07402 precorrin-6B methylas 99.3 1.2E-10 2.6E-15 100.0 14.0 101 166-270 29-144 (196)
95 TIGR03533 L3_gln_methyl protei 99.3 3.5E-10 7.5E-15 102.7 17.4 117 176-320 120-275 (284)
96 PRK09328 N5-glutamine S-adenos 99.3 2.5E-10 5.5E-15 103.2 16.4 127 164-317 95-260 (275)
97 TIGR00536 hemK_fam HemK family 99.3 3.3E-10 7.1E-15 103.0 16.9 112 179-317 116-267 (284)
98 TIGR00080 pimt protein-L-isoas 99.2 9.6E-11 2.1E-15 102.2 12.0 96 167-268 67-177 (215)
99 TIGR01177 conserved hypothetic 99.2 1.8E-10 3.9E-15 106.9 14.0 121 165-317 170-313 (329)
100 KOG1271 Methyltransferases [Ge 99.2 1.5E-10 3.2E-15 94.8 11.6 113 179-318 69-204 (227)
101 KOG3010 Methyltransferase [Gen 99.2 1.3E-10 2.8E-15 99.5 11.6 89 179-270 35-138 (261)
102 COG2813 RsmC 16S RNA G1207 met 99.2 7.6E-10 1.6E-14 98.8 16.3 103 166-269 147-267 (300)
103 PF13659 Methyltransf_26: Meth 99.2 1.4E-10 3E-15 90.9 10.5 92 178-270 1-117 (117)
104 PF05148 Methyltransf_8: Hypot 99.2 1.3E-10 2.7E-15 98.1 10.4 160 140-332 38-199 (219)
105 PRK00312 pcm protein-L-isoaspa 99.2 2.7E-10 5.9E-15 99.1 12.4 96 166-269 67-176 (212)
106 PRK11805 N5-glutamine S-adenos 99.2 1.1E-09 2.3E-14 100.5 16.7 125 178-331 134-297 (307)
107 COG2519 GCD14 tRNA(1-methylade 99.2 3.5E-10 7.7E-15 98.1 12.3 103 164-271 81-198 (256)
108 PF05219 DREV: DREV methyltran 99.2 2.2E-10 4.7E-15 99.9 11.0 93 177-271 94-191 (265)
109 PF05891 Methyltransf_PK: AdoM 99.2 2.1E-10 4.5E-15 97.7 10.5 130 177-318 55-200 (218)
110 PHA03411 putative methyltransf 99.2 8.9E-10 1.9E-14 97.8 14.8 136 157-314 46-209 (279)
111 PRK14966 unknown domain/N5-glu 99.2 2E-09 4.3E-14 101.1 17.2 139 164-331 240-419 (423)
112 COG4123 Predicted O-methyltran 99.1 2.1E-09 4.5E-14 94.1 15.3 124 168-318 35-193 (248)
113 PF05724 TPMT: Thiopurine S-me 99.1 5.7E-10 1.2E-14 97.0 11.6 127 173-317 33-188 (218)
114 PRK13256 thiopurine S-methyltr 99.1 1.6E-09 3.5E-14 94.2 14.1 118 174-309 40-188 (226)
115 COG2518 Pcm Protein-L-isoaspar 99.1 7.3E-10 1.6E-14 94.1 11.0 97 165-269 60-170 (209)
116 PF03291 Pox_MCEL: mRNA cappin 99.1 4.4E-10 9.6E-15 103.5 10.2 95 177-272 62-190 (331)
117 TIGR03704 PrmC_rel_meth putati 99.1 4.2E-09 9.2E-14 93.8 16.1 117 178-321 87-242 (251)
118 PF08704 GCD14: tRNA methyltra 99.1 1.3E-09 2.9E-14 96.0 12.5 127 160-317 23-169 (247)
119 PRK01544 bifunctional N5-gluta 99.1 1.9E-09 4.2E-14 105.2 14.9 113 178-317 139-291 (506)
120 PF01135 PCMT: Protein-L-isoas 99.1 5.3E-10 1.2E-14 96.5 8.5 99 166-270 61-174 (209)
121 cd02440 AdoMet_MTases S-adenos 99.0 2.2E-09 4.8E-14 80.8 10.4 87 180-267 1-103 (107)
122 COG2890 HemK Methylase of poly 99.0 1.1E-08 2.5E-13 92.4 15.9 125 180-331 113-277 (280)
123 KOG3178 Hydroxyindole-O-methyl 99.0 3E-09 6.5E-14 96.4 12.0 149 179-329 179-341 (342)
124 KOG3045 Predicted RNA methylas 99.0 4.7E-09 1E-13 90.7 12.2 165 133-332 138-305 (325)
125 KOG2899 Predicted methyltransf 99.0 1.9E-09 4.1E-14 92.3 9.2 135 177-316 58-254 (288)
126 PRK00811 spermidine synthase; 99.0 7.7E-09 1.7E-13 93.8 13.7 92 177-268 76-191 (283)
127 TIGR00563 rsmB ribosomal RNA s 99.0 3.8E-09 8.2E-14 101.4 12.2 107 166-272 227-372 (426)
128 PRK10901 16S rRNA methyltransf 99.0 9.7E-09 2.1E-13 98.6 14.6 104 168-271 235-375 (427)
129 KOG1975 mRNA cap methyltransfe 99.0 1.4E-09 3E-14 96.7 7.7 95 177-272 117-241 (389)
130 PRK01581 speE spermidine synth 99.0 7.2E-09 1.6E-13 95.4 12.7 132 178-331 151-314 (374)
131 TIGR00417 speE spermidine synt 99.0 1.5E-08 3.3E-13 91.4 14.7 90 178-267 73-185 (270)
132 PRK13943 protein-L-isoaspartat 99.0 6.7E-09 1.5E-13 95.4 12.3 95 168-268 71-180 (322)
133 PRK04457 spermidine synthase; 99.0 9.9E-09 2.2E-13 92.0 12.4 94 177-270 66-179 (262)
134 TIGR00438 rrmJ cell division p 98.9 3.7E-09 8E-14 90.2 9.1 101 167-270 22-148 (188)
135 PF12147 Methyltransf_20: Puta 98.9 6.1E-08 1.3E-12 85.8 15.7 153 175-330 133-311 (311)
136 PRK14901 16S rRNA methyltransf 98.9 1.1E-08 2.4E-13 98.4 11.9 107 165-271 240-387 (434)
137 PF11968 DUF3321: Putative met 98.9 1.3E-08 2.9E-13 86.5 10.0 129 179-330 53-192 (219)
138 PF02390 Methyltransf_4: Putat 98.9 1.1E-08 2.4E-13 87.5 9.6 87 180-271 20-136 (195)
139 PF07942 N2227: N2227-like pro 98.8 7.7E-08 1.7E-12 85.6 14.1 130 177-319 56-242 (270)
140 PRK14903 16S rRNA methyltransf 98.8 3.1E-08 6.6E-13 95.1 11.7 106 167-272 227-370 (431)
141 TIGR00446 nop2p NOL1/NOP2/sun 98.8 4.3E-08 9.4E-13 88.1 11.9 102 171-272 65-203 (264)
142 KOG2940 Predicted methyltransf 98.8 5.1E-09 1.1E-13 88.9 5.4 138 178-316 73-224 (325)
143 PLN02366 spermidine synthase 98.8 1.2E-07 2.6E-12 86.7 14.9 92 177-268 91-206 (308)
144 PRK14902 16S rRNA methyltransf 98.8 3.3E-08 7.1E-13 95.5 11.7 105 167-271 240-382 (444)
145 PRK14904 16S rRNA methyltransf 98.8 5.6E-08 1.2E-12 93.9 12.4 105 168-272 241-381 (445)
146 PLN02781 Probable caffeoyl-CoA 98.8 6.3E-08 1.4E-12 85.4 11.7 101 168-271 59-181 (234)
147 PRK03612 spermidine synthase; 98.8 5.4E-08 1.2E-12 95.6 12.3 132 177-330 297-459 (521)
148 PF03141 Methyltransf_29: Puta 98.8 6.6E-09 1.4E-13 98.2 5.5 107 163-271 99-222 (506)
149 COG0220 Predicted S-adenosylme 98.8 7.9E-08 1.7E-12 83.8 11.4 88 179-271 50-167 (227)
150 smart00650 rADc Ribosomal RNA 98.7 1.8E-07 3.8E-12 78.4 12.1 99 168-271 4-116 (169)
151 COG2521 Predicted archaeal met 98.7 1.5E-07 3.3E-12 80.4 10.8 130 171-321 128-279 (287)
152 PRK11783 rlmL 23S rRNA m(2)G24 98.7 2E-07 4.4E-12 94.7 13.7 92 177-269 538-657 (702)
153 PRK15128 23S rRNA m(5)C1962 me 98.7 3.1E-07 6.7E-12 87.0 12.3 92 177-269 220-340 (396)
154 PHA03412 putative methyltransf 98.6 3.9E-07 8.4E-12 79.3 11.6 143 157-313 31-196 (241)
155 PRK13168 rumA 23S rRNA m(5)U19 98.6 4.2E-07 9.1E-12 87.8 13.1 100 164-269 284-401 (443)
156 PLN02672 methionine S-methyltr 98.6 5E-07 1.1E-11 94.2 14.3 115 178-319 119-303 (1082)
157 COG4122 Predicted O-methyltran 98.6 3.3E-07 7.1E-12 79.1 10.9 104 167-273 49-171 (219)
158 KOG2904 Predicted methyltransf 98.6 2.6E-07 5.7E-12 80.7 9.8 109 163-271 131-288 (328)
159 PF10294 Methyltransf_16: Puta 98.6 2.1E-07 4.6E-12 78.2 9.1 96 175-271 43-159 (173)
160 PF01739 CheR: CheR methyltran 98.6 9.9E-08 2.1E-12 81.5 7.0 91 177-267 31-174 (196)
161 PRK11727 23S rRNA mA1618 methy 98.6 1.9E-06 4.1E-11 79.1 15.3 136 177-318 114-291 (321)
162 TIGR00479 rumA 23S rRNA (uraci 98.6 1.2E-06 2.5E-11 84.6 14.4 98 165-267 280-395 (431)
163 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 1.9E-07 4.1E-12 82.6 8.0 143 176-330 55-256 (256)
164 PF01596 Methyltransf_3: O-met 98.6 4.4E-07 9.5E-12 78.2 9.7 93 176-271 44-158 (205)
165 PLN02476 O-methyltransferase 98.5 1.1E-06 2.5E-11 78.7 12.1 103 167-272 108-232 (278)
166 PRK10909 rsmD 16S rRNA m(2)G96 98.5 2.3E-06 5E-11 73.4 12.9 104 165-270 40-161 (199)
167 PRK10611 chemotaxis methyltran 98.5 5.8E-07 1.3E-11 81.2 9.2 90 178-267 116-261 (287)
168 KOG1331 Predicted methyltransf 98.5 2.6E-07 5.7E-12 81.4 6.3 90 178-271 46-146 (293)
169 KOG1269 SAM-dependent methyltr 98.5 4.2E-07 9.1E-12 84.6 7.7 95 176-271 109-218 (364)
170 COG1041 Predicted DNA modifica 98.5 2E-06 4.3E-11 78.5 11.8 104 164-269 184-311 (347)
171 PRK01544 bifunctional N5-gluta 98.5 1E-06 2.2E-11 86.2 10.7 89 177-270 347-464 (506)
172 PRK03522 rumB 23S rRNA methylu 98.5 1.8E-06 4E-11 79.6 11.5 99 165-268 161-274 (315)
173 COG2263 Predicted RNA methylas 98.4 1.5E-05 3.2E-10 66.5 14.3 49 174-223 42-90 (198)
174 KOG1499 Protein arginine N-met 98.4 1.4E-06 2.9E-11 79.2 8.7 89 175-265 58-164 (346)
175 PF09243 Rsm22: Mitochondrial 98.4 4.1E-06 9E-11 75.6 11.5 106 165-272 21-143 (274)
176 PRK00536 speE spermidine synth 98.4 2.6E-06 5.7E-11 75.8 9.8 86 177-269 72-172 (262)
177 KOG1661 Protein-L-isoaspartate 98.3 2.4E-06 5.3E-11 72.0 8.7 96 166-269 73-194 (237)
178 KOG3191 Predicted N6-DNA-methy 98.3 4.5E-05 9.7E-10 63.0 15.5 115 176-316 42-190 (209)
179 COG3963 Phospholipid N-methylt 98.3 2.1E-05 4.6E-10 64.0 13.2 125 146-270 15-158 (194)
180 PRK14896 ksgA 16S ribosomal RN 98.3 3.8E-06 8.3E-11 75.3 9.8 74 164-239 16-99 (258)
181 COG1352 CheR Methylase of chem 98.3 4.8E-06 1E-10 74.4 10.1 90 178-267 97-240 (268)
182 KOG3987 Uncharacterized conser 98.3 2.7E-07 5.9E-12 77.3 1.6 90 178-269 113-208 (288)
183 TIGR00478 tly hemolysin TlyA f 98.3 5.6E-06 1.2E-10 72.4 9.9 123 176-318 74-216 (228)
184 PLN02589 caffeoyl-CoA O-methyl 98.3 7.2E-06 1.6E-10 72.6 10.5 102 167-271 69-193 (247)
185 COG0421 SpeE Spermidine syntha 98.3 1.1E-05 2.3E-10 72.8 11.5 92 174-268 74-190 (282)
186 PRK04338 N(2),N(2)-dimethylgua 98.3 1.2E-05 2.5E-10 76.0 12.1 87 178-268 58-158 (382)
187 TIGR02085 meth_trns_rumB 23S r 98.2 1.1E-05 2.4E-10 76.2 11.7 98 166-268 222-334 (374)
188 PLN02823 spermine synthase 98.2 9.8E-06 2.1E-10 75.0 10.8 90 178-268 104-220 (336)
189 PRK00274 ksgA 16S ribosomal RN 98.2 3.9E-06 8.5E-11 75.8 8.0 58 163-222 28-85 (272)
190 PRK04148 hypothetical protein; 98.2 9.3E-06 2E-10 64.5 8.7 99 166-272 5-113 (134)
191 KOG2915 tRNA(1-methyladenosine 98.2 1.5E-05 3.2E-10 69.8 10.7 100 166-270 94-212 (314)
192 PTZ00338 dimethyladenosine tra 98.2 6.9E-06 1.5E-10 74.8 9.1 73 164-238 23-108 (294)
193 PF04672 Methyltransf_19: S-ad 98.2 2.4E-05 5.1E-10 69.4 11.9 133 179-316 70-233 (267)
194 KOG3201 Uncharacterized conser 98.2 3.8E-06 8.2E-11 67.8 6.0 110 162-271 14-143 (201)
195 PF05185 PRMT5: PRMT5 arginine 98.1 2.1E-05 4.7E-10 75.6 11.6 88 178-265 187-294 (448)
196 PF02384 N6_Mtase: N-6 DNA Met 98.1 1.3E-05 2.8E-10 73.9 9.6 114 157-270 26-185 (311)
197 TIGR00755 ksgA dimethyladenosi 98.1 3.6E-05 7.8E-10 68.8 12.2 57 164-222 16-72 (253)
198 PF01564 Spermine_synth: Sperm 98.1 4.1E-05 8.8E-10 68.0 11.8 94 177-270 76-193 (246)
199 PF01728 FtsJ: FtsJ-like methy 98.1 1.1E-05 2.3E-10 68.3 6.9 95 177-271 23-142 (181)
200 PF01170 UPF0020: Putative RNA 98.1 0.00013 2.8E-09 61.7 13.2 97 164-260 15-143 (179)
201 TIGR00095 RNA methyltransferas 98.0 0.0001 2.2E-09 62.9 12.6 92 177-270 49-161 (189)
202 KOG2798 Putative trehalase [Ca 98.0 6.2E-05 1.3E-09 67.3 11.3 142 164-317 133-335 (369)
203 PF02527 GidB: rRNA small subu 98.0 0.00011 2.4E-09 62.1 12.2 85 180-268 51-148 (184)
204 COG4627 Uncharacterized protei 98.0 8E-07 1.7E-11 71.1 -1.4 50 223-272 39-90 (185)
205 TIGR03439 methyl_EasF probable 97.9 0.00041 8.8E-09 63.8 14.8 99 168-268 69-197 (319)
206 PRK11933 yebU rRNA (cytosine-C 97.9 0.00011 2.4E-09 71.0 11.5 98 174-271 110-245 (470)
207 PF02475 Met_10: Met-10+ like- 97.9 4.8E-05 1E-09 65.2 8.0 92 168-265 94-199 (200)
208 COG0500 SmtA SAM-dependent met 97.9 0.00018 3.9E-09 57.8 11.1 91 181-273 52-160 (257)
209 COG1092 Predicted SAM-dependen 97.9 8.8E-05 1.9E-09 69.7 10.1 93 178-271 218-339 (393)
210 TIGR02987 met_A_Alw26 type II 97.9 8.5E-05 1.9E-09 73.4 10.5 64 159-222 6-84 (524)
211 PF03602 Cons_hypoth95: Conser 97.8 5.4E-05 1.2E-09 64.1 7.2 106 164-271 27-156 (183)
212 KOG1663 O-methyltransferase [S 97.8 0.00018 4E-09 61.8 10.2 100 168-271 64-186 (237)
213 COG0293 FtsJ 23S rRNA methylas 97.8 0.00033 7.1E-09 59.7 11.5 107 167-273 35-164 (205)
214 PF04816 DUF633: Family of unk 97.8 0.0004 8.6E-09 59.8 12.2 121 181-331 1-140 (205)
215 COG4798 Predicted methyltransf 97.8 0.00042 9.2E-09 57.9 10.8 135 170-316 41-202 (238)
216 PF01269 Fibrillarin: Fibrilla 97.7 0.0026 5.7E-08 54.7 15.7 137 173-330 69-227 (229)
217 PRK00050 16S rRNA m(4)C1402 me 97.7 0.00013 2.9E-09 66.1 8.0 58 166-223 8-66 (296)
218 PF08123 DOT1: Histone methyla 97.7 0.00021 4.5E-09 61.6 8.0 101 168-269 33-159 (205)
219 KOG3420 Predicted RNA methylas 97.7 0.00011 2.4E-09 58.4 5.7 56 167-223 38-93 (185)
220 COG0357 GidB Predicted S-adeno 97.6 0.0018 3.8E-08 56.0 13.5 113 178-318 68-194 (215)
221 KOG0820 Ribosomal RNA adenine 97.6 0.0003 6.4E-09 61.9 8.8 71 166-238 47-130 (315)
222 KOG3115 Methyltransferase-like 97.6 0.00012 2.6E-09 61.5 6.0 94 178-271 61-186 (249)
223 COG0030 KsgA Dimethyladenosine 97.6 0.00035 7.6E-09 61.9 8.9 57 164-222 17-73 (259)
224 KOG1500 Protein arginine N-met 97.6 0.00038 8.2E-09 62.9 9.1 90 175-268 175-282 (517)
225 COG2520 Predicted methyltransf 97.6 0.0013 2.9E-08 60.6 13.0 99 167-272 180-293 (341)
226 PF10672 Methyltrans_SAM: S-ad 97.6 0.00044 9.5E-09 62.5 9.6 93 177-270 123-240 (286)
227 COG0742 N6-adenine-specific me 97.5 0.0027 5.8E-08 53.4 12.2 109 162-271 26-157 (187)
228 PF13679 Methyltransf_32: Meth 97.5 0.00038 8.3E-09 56.4 6.9 46 176-222 24-74 (141)
229 KOG2352 Predicted spermine/spe 97.4 0.00044 9.5E-09 65.8 7.8 90 179-269 50-162 (482)
230 COG2265 TrmA SAM-dependent met 97.4 0.0019 4.2E-08 61.9 12.4 60 163-224 279-338 (432)
231 TIGR00308 TRM1 tRNA(guanine-26 97.4 0.0035 7.5E-08 59.1 13.7 89 178-270 45-149 (374)
232 PF03269 DUF268: Caenorhabditi 97.4 0.00057 1.2E-08 55.5 7.2 124 178-319 2-145 (177)
233 KOG1709 Guanidinoacetate methy 97.4 0.0008 1.7E-08 57.2 8.3 90 176-266 100-204 (271)
234 COG0144 Sun tRNA and rRNA cyto 97.4 0.002 4.3E-08 60.4 11.8 106 167-272 146-292 (355)
235 COG4262 Predicted spermidine s 97.4 0.0026 5.7E-08 58.3 11.7 127 178-331 290-452 (508)
236 KOG4589 Cell division protein 97.4 0.00071 1.5E-08 56.3 7.3 95 175-272 67-188 (232)
237 COG2835 Uncharacterized conser 97.4 0.0001 2.2E-09 49.2 1.8 45 69-122 6-50 (60)
238 PRK11827 hypothetical protein; 97.4 9.3E-05 2E-09 49.9 1.6 45 69-122 6-50 (60)
239 PF03141 Methyltransf_29: Puta 97.4 0.0013 2.8E-08 62.9 9.8 112 174-316 362-488 (506)
240 TIGR02143 trmA_only tRNA (urac 97.3 0.0006 1.3E-08 63.9 7.6 58 164-224 185-242 (353)
241 TIGR01444 fkbM_fam methyltrans 97.3 0.00053 1.2E-08 55.3 6.2 45 180-224 1-45 (143)
242 COG3897 Predicted methyltransf 97.3 0.00082 1.8E-08 56.4 7.1 104 167-272 69-183 (218)
243 PF07091 FmrO: Ribosomal RNA m 97.3 0.0019 4.2E-08 56.6 9.1 149 158-325 88-249 (251)
244 PRK05031 tRNA (uracil-5-)-meth 97.2 0.0009 2E-08 63.0 7.5 58 164-224 194-251 (362)
245 PRK11760 putative 23S rRNA C24 97.2 0.0025 5.5E-08 58.5 9.7 79 176-261 210-296 (357)
246 PF03059 NAS: Nicotianamine sy 97.2 0.0053 1.1E-07 55.1 11.4 93 178-270 121-232 (276)
247 COG1189 Predicted rRNA methyla 97.1 0.0039 8.5E-08 54.1 9.7 130 175-318 77-223 (245)
248 COG1889 NOP1 Fibrillarin-like 97.1 0.044 9.5E-07 46.5 15.4 136 173-330 72-229 (231)
249 PLN02668 indole-3-acetate carb 97.1 0.0088 1.9E-07 56.3 12.7 87 226-312 157-301 (386)
250 PF03492 Methyltransf_7: SAM d 97.1 0.012 2.7E-07 54.6 13.0 138 177-314 16-248 (334)
251 PF00398 RrnaAD: Ribosomal RNA 97.0 0.0022 4.7E-08 57.6 7.6 58 163-222 16-73 (262)
252 PRK11783 rlmL 23S rRNA m(2)G24 97.0 0.0056 1.2E-07 62.7 11.4 110 162-271 174-350 (702)
253 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.0 0.0054 1.2E-07 55.7 9.9 104 168-271 76-222 (283)
254 PF05958 tRNA_U5-meth_tr: tRNA 96.9 0.0022 4.7E-08 60.2 6.7 59 163-224 183-241 (352)
255 COG5459 Predicted rRNA methyla 96.9 0.0037 8E-08 57.0 7.5 106 167-272 103-229 (484)
256 TIGR00006 S-adenosyl-methyltra 96.8 0.0093 2E-07 54.4 9.5 59 165-223 8-66 (305)
257 COG2384 Predicted SAM-dependen 96.8 0.074 1.6E-06 45.8 14.2 119 166-316 7-140 (226)
258 KOG2187 tRNA uracil-5-methyltr 96.4 0.0051 1.1E-07 59.0 5.5 60 163-224 369-428 (534)
259 PF03966 Trm112p: Trm112p-like 96.4 0.0014 3.1E-08 45.9 1.4 47 67-113 3-68 (68)
260 PF09445 Methyltransf_15: RNA 96.3 0.0091 2E-07 49.3 5.6 43 180-224 2-44 (163)
261 PF06859 Bin3: Bicoid-interact 95.9 0.0021 4.5E-08 49.0 0.1 83 231-318 1-91 (110)
262 COG4076 Predicted RNA methylas 95.9 0.012 2.6E-07 49.2 4.5 86 179-266 34-133 (252)
263 COG0116 Predicted N6-adenine-s 95.8 0.043 9.4E-07 51.3 8.3 106 163-269 177-345 (381)
264 COG1063 Tdh Threonine dehydrog 95.8 0.14 3E-06 48.0 11.9 90 177-272 168-273 (350)
265 PF07757 AdoMet_MTase: Predict 95.8 0.015 3.3E-07 44.0 4.2 33 176-210 57-89 (112)
266 COG0286 HsdM Type I restrictio 95.7 0.12 2.5E-06 50.8 11.4 132 140-271 144-329 (489)
267 KOG4058 Uncharacterized conser 95.7 0.059 1.3E-06 43.3 7.4 109 158-270 53-174 (199)
268 PF13578 Methyltransf_24: Meth 95.7 0.0029 6.4E-08 48.2 0.1 86 182-268 1-105 (106)
269 PF01795 Methyltransf_5: MraW 95.7 0.024 5.2E-07 51.7 6.0 69 167-239 10-78 (310)
270 KOG2793 Putative N2,N2-dimethy 95.7 0.066 1.4E-06 47.3 8.5 94 178-272 87-203 (248)
271 PF13719 zinc_ribbon_5: zinc-r 95.7 0.0059 1.3E-07 37.1 1.4 36 70-109 1-36 (37)
272 PF05971 Methyltransf_10: Prot 95.6 0.028 6.1E-07 51.0 6.0 63 178-242 103-188 (299)
273 COG1064 AdhP Zn-dependent alco 95.6 0.1 2.3E-06 48.2 9.8 89 174-270 163-261 (339)
274 KOG2539 Mitochondrial/chloropl 95.3 0.038 8.3E-07 52.5 6.1 106 167-272 190-319 (491)
275 PRK11524 putative methyltransf 95.3 0.061 1.3E-06 48.9 7.3 59 162-223 194-252 (284)
276 KOG2730 Methylase [General fun 95.1 0.039 8.5E-07 47.3 4.9 60 162-223 78-138 (263)
277 PF01555 N6_N4_Mtase: DNA meth 95.0 0.068 1.5E-06 46.2 6.5 58 159-219 174-231 (231)
278 COG3809 Uncharacterized protei 95.0 0.011 2.3E-07 41.5 1.0 40 71-117 1-40 (88)
279 TIGR00027 mthyl_TIGR00027 meth 95.0 1 2.2E-05 40.3 14.1 147 168-317 73-248 (260)
280 PRK13699 putative methylase; P 94.7 0.13 2.8E-06 45.1 7.5 61 160-223 147-207 (227)
281 cd08283 FDH_like_1 Glutathione 94.7 0.33 7.2E-06 46.0 10.9 96 174-269 181-307 (386)
282 PF13717 zinc_ribbon_4: zinc-r 94.7 0.018 3.9E-07 34.7 1.4 35 70-108 1-35 (36)
283 PF06962 rRNA_methylase: Putat 94.5 0.16 3.4E-06 40.8 6.8 69 203-271 1-95 (140)
284 PRK00420 hypothetical protein; 94.4 0.022 4.8E-07 43.7 1.6 30 72-111 24-53 (112)
285 KOG1122 tRNA and rRNA cytosine 94.2 0.23 5E-06 46.8 8.0 100 172-271 236-374 (460)
286 PRK09424 pntA NAD(P) transhydr 94.1 0.28 6E-06 48.2 8.9 94 175-269 162-286 (509)
287 KOG1099 SAM-dependent methyltr 94.0 0.036 7.8E-07 47.8 2.3 95 178-272 42-167 (294)
288 KOG0024 Sorbitol dehydrogenase 94.0 0.53 1.1E-05 43.0 9.7 94 172-272 164-277 (354)
289 PF01861 DUF43: Protein of unk 94.0 2.3 5E-05 37.4 13.3 90 177-268 44-149 (243)
290 TIGR02098 MJ0042_CXXC MJ0042 f 93.9 0.031 6.8E-07 34.1 1.3 35 71-109 2-36 (38)
291 PF14803 Nudix_N_2: Nudix N-te 93.8 0.029 6.3E-07 33.3 0.9 30 74-108 3-32 (34)
292 KOG1596 Fibrillarin and relate 93.7 0.19 4.1E-06 43.9 6.1 92 174-270 153-263 (317)
293 PF04989 CmcI: Cephalosporin h 93.7 0.24 5.2E-06 42.5 6.7 94 177-271 32-150 (206)
294 PHA01634 hypothetical protein 93.6 0.21 4.5E-06 39.2 5.5 46 177-223 28-73 (156)
295 PF05430 Methyltransf_30: S-ad 93.6 0.24 5.1E-06 39.1 6.0 71 230-331 49-124 (124)
296 KOG1562 Spermidine synthase [A 93.5 0.22 4.8E-06 44.8 6.3 89 177-270 121-238 (337)
297 KOG2920 Predicted methyltransf 93.4 0.069 1.5E-06 47.7 3.1 89 177-266 116-232 (282)
298 COG0275 Predicted S-adenosylme 93.4 0.64 1.4E-05 42.1 9.1 60 164-223 10-70 (314)
299 PF03514 GRAS: GRAS domain fam 93.3 2.8 6E-05 39.7 13.9 103 167-271 100-246 (374)
300 PF10571 UPF0547: Uncharacteri 93.2 0.059 1.3E-06 29.9 1.4 24 73-109 2-25 (26)
301 TIGR01206 lysW lysine biosynth 92.9 0.064 1.4E-06 35.5 1.5 33 71-110 2-34 (54)
302 COG1997 RPL43A Ribosomal prote 92.7 0.061 1.3E-06 38.8 1.4 32 71-111 35-66 (89)
303 PF02636 Methyltransf_28: Puta 92.6 0.31 6.6E-06 43.4 6.1 46 178-223 19-72 (252)
304 PRK09678 DNA-binding transcrip 92.6 0.072 1.6E-06 37.5 1.6 49 71-120 1-51 (72)
305 KOG1098 Putative SAM-dependent 92.2 1.4 3.1E-05 43.5 10.4 101 168-270 35-160 (780)
306 PF11599 AviRa: RRNA methyltra 92.2 0.42 9.1E-06 41.1 6.0 55 168-222 42-98 (246)
307 COG2888 Predicted Zn-ribbon RN 92.1 0.072 1.6E-06 35.4 1.1 38 66-107 22-59 (61)
308 PHA00626 hypothetical protein 92.1 0.087 1.9E-06 34.6 1.4 33 73-110 2-35 (59)
309 PF08274 PhnA_Zn_Ribbon: PhnA 92.1 0.07 1.5E-06 30.7 0.9 26 73-108 4-29 (30)
310 PF08271 TF_Zn_Ribbon: TFIIB z 92.1 0.083 1.8E-06 33.2 1.3 30 72-109 1-30 (43)
311 COG1565 Uncharacterized conser 92.0 1 2.2E-05 41.9 8.7 48 177-224 77-132 (370)
312 PF09297 zf-NADH-PPase: NADH p 91.9 0.084 1.8E-06 30.9 1.1 27 73-108 5-31 (32)
313 PRK01747 mnmC bifunctional tRN 91.9 1.2 2.5E-05 45.6 10.1 40 248-317 186-225 (662)
314 COG3129 Predicted SAM-dependen 91.8 0.36 7.9E-06 41.9 5.2 83 158-242 53-164 (292)
315 COG1645 Uncharacterized Zn-fin 91.6 0.089 1.9E-06 41.3 1.3 24 72-106 29-52 (131)
316 KOG2198 tRNA cytosine-5-methyl 91.5 1.6 3.4E-05 40.7 9.3 100 173-272 151-300 (375)
317 PF14353 CpXC: CpXC protein 91.3 0.093 2E-06 41.6 1.2 40 72-111 2-51 (128)
318 KOG2352 Predicted spermine/spe 91.3 0.75 1.6E-05 44.3 7.3 97 177-274 295-422 (482)
319 PF14446 Prok-RING_1: Prokaryo 91.2 0.11 2.4E-06 34.1 1.2 29 71-110 5-33 (54)
320 cd05188 MDR Medium chain reduc 91.1 6 0.00013 34.6 12.9 88 176-270 133-234 (271)
321 PF09862 DUF2089: Protein of u 90.9 0.098 2.1E-06 40.2 0.9 25 74-111 1-25 (113)
322 PF10354 DUF2431: Domain of un 90.8 4.1 8.8E-05 33.8 10.5 112 183-320 2-153 (166)
323 KOG2651 rRNA adenine N-6-methy 90.8 0.68 1.5E-05 43.2 6.3 43 176-219 152-194 (476)
324 COG1656 Uncharacterized conser 90.8 0.088 1.9E-06 43.0 0.5 39 70-108 96-140 (165)
325 COG1198 PriA Primosomal protei 90.6 3.9 8.4E-05 42.0 12.1 95 179-273 484-605 (730)
326 PF13453 zf-TFIIB: Transcripti 90.6 0.052 1.1E-06 33.7 -0.7 34 73-113 1-34 (41)
327 PRK10742 putative methyltransf 90.6 0.94 2E-05 40.1 6.8 55 167-223 76-132 (250)
328 PF01927 Mut7-C: Mut7-C RNAse 90.3 0.15 3.3E-06 41.5 1.5 39 71-109 91-135 (147)
329 COG4301 Uncharacterized conser 90.3 6.1 0.00013 34.9 11.3 94 177-270 78-195 (321)
330 PRK09880 L-idonate 5-dehydroge 89.9 2.8 6.1E-05 38.9 9.9 87 176-269 168-267 (343)
331 PF11781 RRN7: RNA polymerase 89.6 0.18 3.9E-06 30.3 1.1 28 70-107 7-34 (36)
332 cd08237 ribitol-5-phosphate_DH 89.5 1.6 3.5E-05 40.5 8.0 91 175-269 161-257 (341)
333 PRK13699 putative methylase; P 89.2 1.3 2.8E-05 38.8 6.7 19 248-266 52-70 (227)
334 PF01780 Ribosomal_L37ae: Ribo 89.1 0.17 3.7E-06 37.1 0.8 32 70-110 34-65 (90)
335 KOG1501 Arginine N-methyltrans 89.1 0.68 1.5E-05 43.9 5.0 45 179-224 68-112 (636)
336 PF01096 TFIIS_C: Transcriptio 89.1 0.12 2.5E-06 31.8 -0.1 37 72-108 1-38 (39)
337 PRK00398 rpoP DNA-directed RNA 89.0 0.28 6.2E-06 31.2 1.8 29 71-108 3-31 (46)
338 cd08254 hydroxyacyl_CoA_DH 6-h 89.0 4 8.6E-05 37.3 10.2 88 175-269 163-264 (338)
339 TIGR02822 adh_fam_2 zinc-bindi 88.8 5.3 0.00011 36.9 10.8 90 173-269 161-255 (329)
340 TIGR01202 bchC 2-desacetyl-2-h 88.5 3 6.5E-05 38.1 8.9 87 177-269 144-232 (308)
341 PF07652 Flavi_DEAD: Flaviviru 88.4 9 0.0002 31.0 10.3 91 179-273 6-138 (148)
342 PF00107 ADH_zinc_N: Zinc-bind 88.3 1 2.2E-05 35.2 5.0 78 187-271 1-92 (130)
343 PRK00464 nrdR transcriptional 87.9 0.28 6.1E-06 40.1 1.5 42 72-113 1-43 (154)
344 COG3510 CmcI Cephalosporin hyd 87.8 1.7 3.7E-05 36.7 6.0 99 177-275 69-187 (237)
345 PF11253 DUF3052: Protein of u 87.5 12 0.00027 29.3 11.3 72 229-322 43-114 (127)
346 TIGR00561 pntA NAD(P) transhyd 87.3 2.2 4.8E-05 41.9 7.5 89 176-266 162-282 (511)
347 PF14354 Lar_restr_allev: Rest 87.2 0.35 7.5E-06 32.8 1.4 36 70-106 2-37 (61)
348 PRK14890 putative Zn-ribbon RN 87.1 0.3 6.5E-06 32.6 1.0 35 69-107 23-57 (59)
349 PF07191 zinc-ribbons_6: zinc- 87.1 0.28 6.2E-06 34.1 0.9 28 72-110 2-29 (70)
350 PF13240 zinc_ribbon_2: zinc-r 87.0 0.34 7.5E-06 26.0 1.0 20 74-106 2-21 (23)
351 TIGR00686 phnA alkylphosphonat 87.0 0.39 8.4E-06 36.3 1.6 31 72-112 3-33 (109)
352 TIGR03655 anti_R_Lar restricti 87.0 0.44 9.5E-06 31.4 1.7 37 72-110 2-38 (53)
353 PRK10220 hypothetical protein; 86.9 0.42 9.1E-06 36.1 1.8 31 72-112 4-34 (111)
354 smart00440 ZnF_C2C2 C2C2 Zinc 86.8 0.27 5.9E-06 30.3 0.7 37 72-108 1-38 (40)
355 TIGR00595 priA primosomal prot 86.8 14 0.0003 36.5 12.8 15 259-273 369-383 (505)
356 TIGR03831 YgiT_finger YgiT-typ 86.6 0.37 7.9E-06 30.4 1.2 16 95-110 29-44 (46)
357 PF13248 zf-ribbon_3: zinc-rib 86.5 0.39 8.4E-06 26.6 1.1 23 71-106 2-24 (26)
358 PF03119 DNA_ligase_ZBD: NAD-d 86.5 0.34 7.3E-06 27.4 0.8 13 73-85 1-13 (28)
359 PRK05580 primosome assembly pr 86.4 13 0.00028 38.3 12.8 14 259-272 537-550 (679)
360 cd00315 Cyt_C5_DNA_methylase C 86.4 2.7 5.8E-05 38.0 7.1 59 180-239 2-70 (275)
361 COG1867 TRM1 N2,N2-dimethylgua 86.4 17 0.00037 34.0 12.2 91 178-272 53-158 (380)
362 smart00661 RPOL9 RNA polymeras 86.3 0.58 1.3E-05 30.4 2.1 34 73-113 2-35 (52)
363 PTZ00255 60S ribosomal protein 86.3 0.35 7.6E-06 35.5 1.1 32 70-110 35-66 (90)
364 COG1326 Uncharacterized archae 86.2 0.29 6.2E-06 41.0 0.7 37 71-111 6-43 (201)
365 PF08792 A2L_zn_ribbon: A2L zi 86.2 0.51 1.1E-05 27.8 1.6 30 71-109 3-32 (33)
366 PF14740 DUF4471: Domain of un 86.2 1.4 3.1E-05 39.9 5.1 67 229-316 220-286 (289)
367 PF02005 TRM: N2,N2-dimethylgu 86.0 3.7 8E-05 38.9 8.0 90 178-271 50-157 (377)
368 TIGR00280 L37a ribosomal prote 85.9 0.33 7.2E-06 35.6 0.8 32 70-110 34-65 (91)
369 PF04445 SAM_MT: Putative SAM- 85.3 1.5 3.3E-05 38.4 4.7 49 168-218 64-114 (234)
370 PRK00432 30S ribosomal protein 84.8 0.54 1.2E-05 30.6 1.3 27 72-108 21-47 (50)
371 cd05213 NAD_bind_Glutamyl_tRNA 84.5 14 0.00031 33.9 11.1 126 169-309 169-302 (311)
372 PRK03976 rpl37ae 50S ribosomal 84.5 0.43 9.2E-06 35.0 0.8 32 70-110 35-66 (90)
373 smart00659 RPOLCX RNA polymera 84.4 0.77 1.7E-05 29.0 1.8 28 71-108 2-29 (44)
374 KOG3507 DNA-directed RNA polym 84.2 1.1 2.3E-05 29.8 2.5 32 67-108 16-47 (62)
375 PF11899 DUF3419: Protein of u 84.2 1.5 3.3E-05 41.5 4.6 55 168-224 26-80 (380)
376 cd08230 glucose_DH Glucose deh 84.1 10 0.00022 35.3 10.2 87 176-269 171-270 (355)
377 TIGR03451 mycoS_dep_FDH mycoth 83.4 11 0.00025 35.0 10.2 90 174-269 173-277 (358)
378 KOG1253 tRNA methyltransferase 83.1 2 4.3E-05 41.5 4.8 92 176-271 108-219 (525)
379 PF06677 Auto_anti-p27: Sjogre 83.0 0.76 1.6E-05 28.5 1.3 24 72-105 18-41 (41)
380 KOG1227 Putative methyltransfe 82.9 1.5 3.3E-05 39.7 3.7 88 178-270 195-299 (351)
381 PRK00415 rps27e 30S ribosomal 82.8 0.89 1.9E-05 30.5 1.7 40 66-113 6-45 (59)
382 PF03604 DNA_RNApol_7kD: DNA d 82.7 1.1 2.5E-05 26.1 2.0 26 73-108 2-27 (32)
383 KOG1088 Uncharacterized conser 82.3 0.61 1.3E-05 35.7 0.9 26 95-120 95-120 (124)
384 TIGR03366 HpnZ_proposed putati 82.0 13 0.00028 33.3 9.7 88 176-269 119-219 (280)
385 PF09538 FYDLN_acid: Protein o 81.8 0.91 2E-05 34.8 1.7 32 70-111 8-39 (108)
386 KOG2782 Putative SAM dependent 81.4 3.4 7.4E-05 35.7 5.1 85 165-249 31-138 (303)
387 COG4306 Uncharacterized protei 81.4 0.83 1.8E-05 35.4 1.4 44 70-113 38-83 (160)
388 PF03811 Zn_Tnp_IS1: InsA N-te 81.3 1.3 2.8E-05 26.7 1.9 29 72-105 6-36 (36)
389 cd00401 AdoHcyase S-adenosyl-L 81.3 12 0.00026 35.9 9.4 87 176-268 200-289 (413)
390 PF09986 DUF2225: Uncharacteri 81.2 0.68 1.5E-05 40.2 1.0 17 95-111 45-61 (214)
391 cd08281 liver_ADH_like1 Zinc-d 80.9 13 0.00028 34.8 9.6 89 174-268 188-290 (371)
392 PF05206 TRM13: Methyltransfer 80.7 4.2 9E-05 36.4 5.8 36 176-211 17-57 (259)
393 PF05129 Elf1: Transcription e 80.4 0.47 1E-05 34.3 -0.3 39 70-111 21-59 (81)
394 PF14205 Cys_rich_KTR: Cystein 80.4 1.3 2.8E-05 29.1 1.8 37 71-111 4-41 (55)
395 KOG2918 Carboxymethyl transfer 80.4 35 0.00075 31.3 11.4 40 178-217 88-129 (335)
396 COG3877 Uncharacterized protei 80.2 0.89 1.9E-05 34.1 1.1 29 70-111 5-33 (122)
397 cd00350 rubredoxin_like Rubred 79.9 1.3 2.9E-05 25.9 1.6 24 72-106 2-25 (33)
398 PF04606 Ogr_Delta: Ogr/Delta- 79.9 0.57 1.2E-05 30.0 0.0 39 73-112 1-41 (47)
399 KOG1269 SAM-dependent methyltr 79.7 8.2 0.00018 36.3 7.6 97 178-277 181-322 (364)
400 PF05050 Methyltransf_21: Meth 79.7 4.3 9.4E-05 32.8 5.3 38 183-220 1-42 (167)
401 PRK12495 hypothetical protein; 79.5 0.97 2.1E-05 38.8 1.3 31 70-111 41-71 (226)
402 PLN03154 putative allyl alcoho 79.5 19 0.00041 33.5 10.1 88 173-268 154-258 (348)
403 TIGR00497 hsdM type I restrict 79.4 22 0.00048 35.1 11.0 114 158-271 196-358 (501)
404 PF02153 PDH: Prephenate dehyd 79.3 4.3 9.4E-05 36.2 5.5 72 191-265 1-76 (258)
405 PF07282 OrfB_Zn_ribbon: Putat 79.1 1 2.2E-05 31.3 1.1 29 71-108 28-56 (69)
406 COG0863 DNA modification methy 78.9 8 0.00017 35.0 7.3 61 162-225 208-268 (302)
407 COG3677 Transposase and inacti 78.7 1.3 2.9E-05 35.1 1.8 41 69-113 28-68 (129)
408 PF02150 RNA_POL_M_15KD: RNA p 78.7 0.91 2E-05 27.1 0.6 31 73-111 3-33 (35)
409 KOG3277 Uncharacterized conser 78.6 2.6 5.6E-05 34.0 3.3 91 17-111 22-117 (165)
410 PHA02998 RNA polymerase subuni 78.5 0.98 2.1E-05 37.3 1.0 41 71-111 143-184 (195)
411 PRK03564 formate dehydrogenase 78.5 1.1 2.4E-05 41.0 1.4 40 70-111 186-225 (309)
412 PLN02586 probable cinnamyl alc 78.4 19 0.0004 33.7 9.8 86 176-268 182-278 (360)
413 COG3315 O-Methyltransferase in 78.3 19 0.0004 33.0 9.4 146 168-317 84-262 (297)
414 PF08273 Prim_Zn_Ribbon: Zinc- 78.0 1 2.3E-05 27.7 0.8 30 72-105 4-33 (40)
415 PF01206 TusA: Sulfurtransfera 77.9 10 0.00022 26.2 6.0 60 245-330 11-70 (70)
416 TIGR01562 FdhE formate dehydro 77.8 1.1 2.5E-05 40.9 1.3 40 71-111 184-223 (305)
417 smart00778 Prim_Zn_Ribbon Zinc 77.7 1.8 3.9E-05 26.2 1.7 31 71-106 3-33 (37)
418 TIGR02300 FYDLN_acid conserved 77.7 1.5 3.3E-05 34.2 1.8 31 71-111 9-39 (129)
419 cd03420 SirA_RHOD_Pry_redox Si 77.6 20 0.00044 24.7 8.4 59 245-329 10-68 (69)
420 COG1779 C4-type Zn-finger prot 77.6 0.9 2E-05 38.3 0.6 42 69-110 12-55 (201)
421 PRK00299 sulfur transfer prote 77.6 23 0.00051 25.4 8.2 60 245-330 20-79 (81)
422 PLN02740 Alcohol dehydrogenase 77.2 19 0.00041 34.0 9.5 90 173-268 194-300 (381)
423 smart00834 CxxC_CXXC_SSSS Puta 77.0 1.6 3.4E-05 26.7 1.4 30 71-106 5-34 (41)
424 COG0686 Ald Alanine dehydrogen 76.7 11 0.00025 34.5 7.2 91 177-268 167-268 (371)
425 COG0287 TyrA Prephenate dehydr 76.5 10 0.00022 34.3 7.1 84 179-265 4-95 (279)
426 COG2051 RPS27A Ribosomal prote 76.4 1.6 3.4E-05 29.9 1.3 41 65-113 13-53 (67)
427 cd08239 THR_DH_like L-threonin 76.2 25 0.00055 32.2 10.0 90 173-269 159-263 (339)
428 PF04216 FdhE: Protein involve 75.8 0.73 1.6E-05 42.0 -0.5 39 71-111 172-210 (290)
429 COG3024 Uncharacterized protei 75.3 1.6 3.5E-05 29.6 1.2 34 71-111 7-40 (65)
430 COG5379 BtaA S-adenosylmethion 74.9 5.3 0.00011 36.2 4.6 48 174-223 60-107 (414)
431 cd08232 idonate-5-DH L-idonate 74.7 29 0.00063 31.7 9.9 85 177-268 165-262 (339)
432 cd03423 SirA SirA (also known 74.5 25 0.00055 24.2 8.5 59 245-329 10-68 (69)
433 PRK00423 tfb transcription ini 74.1 1.8 3.9E-05 39.8 1.6 34 69-110 9-42 (310)
434 PRK11524 putative methyltransf 73.6 5.4 0.00012 36.2 4.6 20 248-267 60-79 (284)
435 TIGR01384 TFS_arch transcripti 73.2 2 4.3E-05 32.5 1.4 27 73-110 2-28 (104)
436 PF07754 DUF1610: Domain of un 73.1 2.7 5.8E-05 22.8 1.5 8 98-105 16-23 (24)
437 PF10083 DUF2321: Uncharacteri 73.0 2.1 4.6E-05 34.6 1.6 47 71-117 39-87 (158)
438 PF11312 DUF3115: Protein of u 73.0 5.6 0.00012 36.4 4.4 94 178-271 87-245 (315)
439 cd00291 SirA_YedF_YeeD SirA, Y 72.9 27 0.00058 23.8 8.5 58 246-329 11-68 (69)
440 cd08295 double_bond_reductase_ 72.9 44 0.00095 30.7 10.6 88 173-268 147-251 (338)
441 COG1062 AdhC Zn-dependent alco 72.8 32 0.00069 32.0 9.2 96 169-270 177-287 (366)
442 TIGR03830 CxxCG_CxxCG_HTH puta 72.6 1.7 3.8E-05 34.0 1.0 17 95-111 28-44 (127)
443 cd08294 leukotriene_B4_DH_like 72.5 39 0.00085 30.6 10.2 87 173-268 139-241 (329)
444 KOG3924 Putative protein methy 72.4 13 0.00027 35.2 6.6 104 168-272 183-312 (419)
445 cd08255 2-desacetyl-2-hydroxye 72.4 31 0.00067 30.5 9.3 88 174-268 94-190 (277)
446 PRK14892 putative transcriptio 72.0 2.9 6.2E-05 31.4 2.0 37 69-111 19-55 (99)
447 KOG0822 Protein kinase inhibit 71.8 17 0.00036 35.8 7.4 88 178-266 368-476 (649)
448 cd03422 YedF YedF is a bacteri 71.8 30 0.00065 23.9 8.3 59 245-329 10-68 (69)
449 COG1327 Predicted transcriptio 71.7 2.3 4.9E-05 34.3 1.4 40 73-112 2-42 (156)
450 PLN02827 Alcohol dehydrogenase 71.4 38 0.00082 31.9 10.0 89 174-268 190-295 (378)
451 TIGR03201 dearomat_had 6-hydro 71.2 35 0.00076 31.6 9.6 92 174-269 163-273 (349)
452 COG4888 Uncharacterized Zn rib 71.2 1.8 4E-05 32.2 0.7 37 71-111 22-59 (104)
453 COG4640 Predicted membrane pro 71.2 2.1 4.5E-05 39.9 1.3 30 71-113 1-30 (465)
454 cd05278 FDH_like Formaldehyde 71.1 33 0.00072 31.4 9.5 88 175-268 165-267 (347)
455 PF12760 Zn_Tnp_IS1595: Transp 71.0 2.6 5.6E-05 26.7 1.3 27 72-106 19-45 (46)
456 COG1571 Predicted DNA-binding 71.0 2.5 5.4E-05 40.2 1.7 32 71-112 350-381 (421)
457 PF11899 DUF3419: Protein of u 70.8 6 0.00013 37.5 4.3 46 227-272 291-338 (380)
458 COG5216 Uncharacterized conser 70.7 1.7 3.7E-05 28.9 0.4 39 65-108 16-54 (67)
459 PRK10309 galactitol-1-phosphat 70.5 34 0.00075 31.5 9.4 89 175-269 158-261 (347)
460 TIGR00244 transcriptional regu 70.5 2.6 5.5E-05 34.0 1.5 41 73-113 2-43 (147)
461 COG1996 RPC10 DNA-directed RNA 69.7 2.6 5.7E-05 27.2 1.1 30 70-108 5-34 (49)
462 TIGR02825 B4_12hDH leukotriene 69.4 33 0.00071 31.3 8.9 87 173-268 134-237 (325)
463 PRK12380 hydrogenase nickel in 69.3 2.8 6.1E-05 32.4 1.5 33 65-108 64-96 (113)
464 PF12692 Methyltransf_17: S-ad 69.3 12 0.00025 30.4 4.9 33 178-210 29-61 (160)
465 PRK11018 hypothetical protein; 68.9 39 0.00084 24.0 8.3 59 245-329 19-77 (78)
466 cd08293 PTGR2 Prostaglandin re 68.9 38 0.00083 31.0 9.3 83 178-268 155-254 (345)
467 PTZ00357 methyltransferase; Pr 68.7 51 0.0011 33.8 10.2 39 179-217 702-744 (1072)
468 PF03721 UDPG_MGDP_dh_N: UDP-g 68.7 54 0.0012 27.6 9.3 86 180-270 2-122 (185)
469 smart00531 TFIIE Transcription 68.7 2.5 5.4E-05 34.3 1.1 39 67-108 95-133 (147)
470 PHA02768 hypothetical protein; 68.7 1.2 2.5E-05 29.6 -0.6 42 72-114 6-47 (55)
471 TIGR02818 adh_III_F_hyde S-(hy 68.7 57 0.0012 30.5 10.5 90 174-269 182-288 (368)
472 cd08261 Zn_ADH7 Alcohol dehydr 68.6 38 0.00083 30.9 9.2 88 174-268 156-258 (337)
473 PTZ00083 40S ribosomal protein 68.5 3.1 6.8E-05 30.0 1.4 42 64-113 28-69 (85)
474 cd08245 CAD Cinnamyl alcohol d 68.5 56 0.0012 29.7 10.3 87 174-268 159-256 (330)
475 PLN00209 ribosomal protein S27 68.4 3.1 6.7E-05 30.1 1.4 42 64-113 29-70 (86)
476 PRK09710 lar restriction allev 68.4 2.8 6E-05 28.6 1.1 31 71-107 6-36 (64)
477 TIGR01385 TFSII transcription 68.3 2.8 6.2E-05 38.2 1.5 42 67-108 254-296 (299)
478 PF01667 Ribosomal_S27e: Ribos 68.1 2.5 5.5E-05 28.0 0.8 38 68-113 4-41 (55)
479 PF09526 DUF2387: Probable met 68.0 2.6 5.7E-05 29.6 1.0 36 73-113 10-45 (71)
480 TIGR02443 conserved hypothetic 67.5 3.1 6.6E-05 27.9 1.1 36 73-113 11-46 (59)
481 PF09723 Zn-ribbon_8: Zinc rib 67.3 3.4 7.3E-05 25.7 1.3 30 71-106 5-34 (42)
482 PRK06035 3-hydroxyacyl-CoA deh 67.3 31 0.00067 31.2 8.1 39 179-219 4-44 (291)
483 PRK07417 arogenate dehydrogena 67.1 30 0.00066 31.1 8.0 80 180-264 2-87 (279)
484 PF10237 N6-adenineMlase: Prob 66.9 23 0.0005 29.3 6.5 104 163-270 9-125 (162)
485 COG1096 Predicted RNA-binding 66.3 3.2 6.8E-05 34.8 1.3 26 73-109 151-176 (188)
486 cd08234 threonine_DH_like L-th 66.3 75 0.0016 28.8 10.7 89 174-269 156-258 (334)
487 TIGR02819 fdhA_non_GSH formald 66.3 58 0.0013 30.9 10.1 95 175-269 183-300 (393)
488 PRK07502 cyclohexadienyl dehyd 66.3 32 0.00068 31.4 8.1 84 179-265 7-97 (307)
489 cd08242 MDR_like Medium chain 66.2 68 0.0015 28.9 10.3 86 174-267 152-244 (319)
490 KOG0023 Alcohol dehydrogenase, 66.2 51 0.0011 30.5 8.9 89 175-272 179-283 (360)
491 KOG2906 RNA polymerase III sub 65.9 2.2 4.7E-05 31.6 0.2 36 73-108 67-103 (105)
492 PF02737 3HCDH_N: 3-hydroxyacy 65.8 9.9 0.00021 31.9 4.3 84 181-271 2-117 (180)
493 PRK03824 hypA hydrogenase nick 65.6 3.7 7.9E-05 32.9 1.5 39 70-108 69-117 (135)
494 TIGR00936 ahcY adenosylhomocys 65.2 57 0.0012 31.3 9.7 86 176-268 193-282 (406)
495 PF08421 Methyltransf_13: Puta 65.0 2.2 4.8E-05 29.1 0.1 18 95-112 37-54 (62)
496 KOG2671 Putative RNA methylase 64.8 6.5 0.00014 36.4 3.0 97 173-271 204-357 (421)
497 PRK01343 zinc-binding protein; 64.5 3.8 8.2E-05 27.3 1.1 31 69-110 7-37 (57)
498 PRK06266 transcription initiat 64.5 2.9 6.2E-05 35.2 0.7 36 65-108 111-146 (178)
499 COG1998 RPS31 Ribosomal protei 64.5 4.1 8.9E-05 26.2 1.2 28 72-108 20-47 (51)
500 PF01783 Ribosomal_L32p: Ribos 64.4 6.7 0.00015 26.1 2.4 26 70-110 25-50 (56)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.93 E-value=2.1e-24 Score=187.63 Aligned_cols=193 Identities=24% Similarity=0.348 Sum_probs=152.1
Q ss_pred ccccccCCCCCcCcccccchhhccCchhHHHHHHhHHHhhHhcCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHH
Q 019861 115 FDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRI 194 (334)
Q Consensus 115 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~ 194 (334)
+..+++.....|+.+ |+++|++.++.|++... ..+...+|.+|||||||||.++..
T Consensus 13 v~~vF~~ia~~YD~~---------n~~~S~g~~~~Wr~~~i---------------~~~~~~~g~~vLDva~GTGd~a~~ 68 (238)
T COG2226 13 VQKVFDKVAKKYDLM---------NDLMSFGLHRLWRRALI---------------SLLGIKPGDKVLDVACGTGDMALL 68 (238)
T ss_pred HHHHHHhhHHHHHhh---------cccccCcchHHHHHHHH---------------HhhCCCCCCEEEEecCCccHHHHH
Confidence 344555666677777 89999999999998654 233334789999999999999999
Q ss_pred HHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccC
Q 019861 195 FAKSGLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 260 (334)
Q Consensus 195 l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~Lkp 260 (334)
+++....++++|+|+|+.|++.++++.... .||+|++||+|++.+.|++++|+..+|+|++|+|||
T Consensus 69 ~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKp 148 (238)
T COG2226 69 LAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKP 148 (238)
T ss_pred HHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcC
Confidence 999866789999999999999999987752 389999999999999999999999999999999999
Q ss_pred CcEEEEEEeccCCCCCchHHHHHHHHH-hhhh----------------cCccCCCCHHHHHHHHHhCCCcEEE--EeecC
Q 019861 261 GGVFVGTTYIVDGPFNLIPFSRLLRQN-MMQI----------------SGSYTFLSEREIEDLCRACGLVDFK--CTRNR 321 (334)
Q Consensus 261 gG~lii~~~~~~~~~~~~~~~~~~~~~-~~~~----------------~~~~~~~t~~~l~~ll~~~Gf~~v~--~~~~g 321 (334)
||++++.+............+..+... .... .....+.+.+++.++++++||+.+. ....|
T Consensus 149 gG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G 228 (238)
T COG2226 149 GGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFG 228 (238)
T ss_pred CeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeee
Confidence 999999888875432332222221111 1110 1123477899999999999998766 66789
Q ss_pred cEEEEEEEcC
Q 019861 322 GFVMFTATKP 331 (334)
Q Consensus 322 ~~~~~~a~K~ 331 (334)
...++++.|+
T Consensus 229 ~~~l~~g~K~ 238 (238)
T COG2226 229 IVALHRGYKP 238 (238)
T ss_pred eEEEEEEecC
Confidence 9999999885
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.92 E-value=3.2e-25 Score=194.60 Aligned_cols=193 Identities=23% Similarity=0.354 Sum_probs=82.4
Q ss_pred cccccccCCCCCcCcccccchhhccCchhHHHHHHhHHHhhHhcCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHH
Q 019861 114 HFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSR 193 (334)
Q Consensus 114 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~ 193 (334)
.+..+++.....|+.. |.+++++.++.|++... +.+...++.+|||+|||+|.++.
T Consensus 8 ~v~~~Fd~ia~~YD~~---------n~~ls~g~~~~wr~~~~---------------~~~~~~~g~~vLDv~~GtG~~~~ 63 (233)
T PF01209_consen 8 YVRKMFDRIAPRYDRM---------NDLLSFGQDRRWRRKLI---------------KLLGLRPGDRVLDVACGTGDVTR 63 (233)
T ss_dssp --------------------------------------SHHH---------------HHHT--S--EEEEET-TTSHHHH
T ss_pred HHHHHHHHHHHHhCCC---------ccccCCcHHHHHHHHHH---------------hccCCCCCCEEEEeCCChHHHHH
Confidence 3445666667777777 88899999999997543 23445668899999999999999
Q ss_pred HHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCceEEEeCccccCCCCHHHHHHHHHHcc
Q 019861 194 IFAKS-GLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVL 258 (334)
Q Consensus 194 ~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~L 258 (334)
.+++. ++..+|+|+|+|+.|++.|+++.... .|+++++||+|++.+.|++++|+..+|+|++|+|
T Consensus 64 ~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVL 143 (233)
T PF01209_consen 64 ELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVL 143 (233)
T ss_dssp HHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHE
T ss_pred HHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHc
Confidence 99876 55679999999999999999886532 3788999999999999999999999999999999
Q ss_pred cCCcEEEEEEeccCCCCCchHHHHHHHHHhhh----------------hcCccCCCCHHHHHHHHHhCCCcEEE--Eeec
Q 019861 259 RPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ----------------ISGSYTFLSEREIEDLCRACGLVDFK--CTRN 320 (334)
Q Consensus 259 kpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~t~~~l~~ll~~~Gf~~v~--~~~~ 320 (334)
||||++++.+...........+...+...+.. ......+.+.+++.++++++||+.++ ....
T Consensus 144 kPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~ 223 (233)
T PF01209_consen 144 KPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTF 223 (233)
T ss_dssp EEEEEEEEEEEEB-SSHHHHHHHHH-------------------------------------------------------
T ss_pred CCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998875431111111111111100 01233567899999999999999776 5678
Q ss_pred CcEEEEEEEc
Q 019861 321 RGFVMFTATK 330 (334)
Q Consensus 321 g~~~~~~a~K 330 (334)
|...++++.|
T Consensus 224 G~~~i~~g~K 233 (233)
T PF01209_consen 224 GIVTIHVGTK 233 (233)
T ss_dssp ----------
T ss_pred ccccccccCC
Confidence 8888888876
No 3
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.89 E-value=4.9e-22 Score=178.09 Aligned_cols=159 Identities=20% Similarity=0.277 Sum_probs=118.0
Q ss_pred ccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHh-----------------cCCCCCCCCce
Q 019861 172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQ-----------------QESNFPKDSID 233 (334)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~-----------------~~~~~~~~~fD 233 (334)
.+...++.+|||+|||+|.++..+++. ++..+++|+|+|+.|++.|+++.. ...++++++||
T Consensus 68 ~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 68 WSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred HhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEe
Confidence 344456789999999999999988876 455699999999999999986542 01257788999
Q ss_pred EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHH----hh---h--------hcCccCCC
Q 019861 234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN----MM---Q--------ISGSYTFL 298 (334)
Q Consensus 234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~----~~---~--------~~~~~~~~ 298 (334)
+|++.++++|++|+..+|++++|+|||||.+++.++.........+....+... .. . .....+++
T Consensus 148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~ 227 (261)
T PLN02233 148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYL 227 (261)
T ss_pred EEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999988765321111111111000 00 0 00123578
Q ss_pred CHHHHHHHHHhCCCcEEEE--eecCcEEEEEEEc
Q 019861 299 SEREIEDLCRACGLVDFKC--TRNRGFVMFTATK 330 (334)
Q Consensus 299 t~~~l~~ll~~~Gf~~v~~--~~~g~~~~~~a~K 330 (334)
+.+++.++++++||++++. ...|...++++++
T Consensus 228 s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~ 261 (261)
T PLN02233 228 TGEELEKLALEAGFSSAKHYEISGGLMGNLVATR 261 (261)
T ss_pred CHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEeC
Confidence 9999999999999998874 3456667777654
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.85 E-value=3.8e-20 Score=163.28 Aligned_cols=163 Identities=22% Similarity=0.258 Sum_probs=121.5
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCc
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSI 232 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~f 232 (334)
.+...+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.++++.... .++++++|
T Consensus 36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 115 (231)
T TIGR02752 36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSF 115 (231)
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCc
Confidence 4445566667889999999999999999876 45569999999999999999876421 13567899
Q ss_pred eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCch-----------HHHHHHH-----HHhhhhcCccC
Q 019861 233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI-----------PFSRLLR-----QNMMQISGSYT 296 (334)
Q Consensus 233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~ 296 (334)
|+|++..+++|++++..+|+++.++|+|||++++.+.......... +...... ...........
T Consensus 116 D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 195 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRD 195 (231)
T ss_pred cEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998876543221111 1100000 00000012346
Q ss_pred CCCHHHHHHHHHhCCCcEEE--EeecCcEEEEEEEc
Q 019861 297 FLSEREIEDLCRACGLVDFK--CTRNRGFVMFTATK 330 (334)
Q Consensus 297 ~~t~~~l~~ll~~~Gf~~v~--~~~~g~~~~~~a~K 330 (334)
+++.+++.++++++||++++ ....|...++++.|
T Consensus 196 ~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 196 FPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred cCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 78999999999999999876 44568888888876
No 5
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.84 E-value=1.1e-20 Score=170.58 Aligned_cols=170 Identities=22% Similarity=0.314 Sum_probs=116.9
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccCCCCCcCcccccchhhccCchhHHHHHHhH
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW 150 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~w 150 (334)
.|.||+|+.++.... ..++|+++|+++..++||+++++............ .+ ....
T Consensus 2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~--~~---------~~~a-- 57 (272)
T PRK11088 2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGDN--KE---------MMQA-- 57 (272)
T ss_pred cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCCcC--HH---------HHHH--
Confidence 489999999986533 56999999999999999999997432222111100 00 0011
Q ss_pred HHhhHhcCCCCcH--HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC---CeEEEEeCCHHHHHHHHHHHhc--
Q 019861 151 RQNFVWGGFPGPE--KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQ-- 223 (334)
Q Consensus 151 ~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~v~giD~s~~~~~~a~~~~~~-- 223 (334)
|+.+.+.+++.+. ...+.+.+.+. ....+|||+|||+|.++..+++..+. ..++|+|+|+.+++.|+++...
T Consensus 58 r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~ 136 (272)
T PRK11088 58 RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVT 136 (272)
T ss_pred HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCe
Confidence 2334444443221 22233444443 24578999999999999999876432 3789999999999999876432
Q ss_pred -------CCCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 224 -------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 224 -------~~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
..++++++||+|++...- ..++++.|+|||||++++.++...
T Consensus 137 ~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 137 FCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred EEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCCCEEEEEeCCCc
Confidence 226778999999987641 236899999999999999888754
No 6
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.84 E-value=1.3e-20 Score=156.32 Aligned_cols=133 Identities=28% Similarity=0.453 Sum_probs=106.2
Q ss_pred CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------CCCCCCCCceEEEeCccccCCCCHH
Q 019861 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ESNFPKDSIDAVHAGAAIHCWSSPS 248 (334)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~fD~V~~~~vl~h~~d~~ 248 (334)
..++.+|||||||+|.++..+++.+. +++|+|+++.+++. ..... ....++++||+|+++.+|+|++|+.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~ 95 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPE 95 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--hhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHH
Confidence 35578999999999999999988887 99999999999887 11000 1135678999999999999999999
Q ss_pred HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHH-h-hhhcCccCCCCHHHHHHHHHhCCCcEEE
Q 019861 249 TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN-M-MQISGSYTFLSEREIEDLCRACGLVDFK 316 (334)
Q Consensus 249 ~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~t~~~l~~ll~~~Gf~~v~ 316 (334)
.+|+++.++|||||++++.+++... .....+..+ + .....|..+++.+++.++++++||++++
T Consensus 96 ~~l~~l~~~LkpgG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 96 EFLKELSRLLKPGGYLVISDPNRDD-----PSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHCEEEEEEEEEEEEBTTS-----HHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEEcCCcc-----hhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999998642 111111111 1 1112578899999999999999999886
No 7
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.83 E-value=6.1e-20 Score=156.94 Aligned_cols=191 Identities=21% Similarity=0.228 Sum_probs=144.3
Q ss_pred cccccCCCCCcCcccccchhhccCchhHHHHHHhHHHhhHhcCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHH
Q 019861 116 DMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIF 195 (334)
Q Consensus 116 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l 195 (334)
..+++.....|+.+ |+.++.+.++.|+..+. ..+.+.++.++||++||+|..+..+
T Consensus 63 ~~vF~~vA~~YD~m---------ND~mSlGiHRlWKd~~v---------------~~L~p~~~m~~lDvaGGTGDiaFri 118 (296)
T KOG1540|consen 63 HHVFESVAKKYDIM---------NDAMSLGIHRLWKDMFV---------------SKLGPGKGMKVLDVAGGTGDIAFRI 118 (296)
T ss_pred HHHHHHHHHHHHHH---------HHHhhcchhHHHHHHhh---------------hccCCCCCCeEEEecCCcchhHHHH
Confidence 34555566667777 88999999999976554 4577778899999999999998888
Q ss_pred HHcCCC------CeEEEEeCCHHHHHHHHHHHhc-----------------CCCCCCCCceEEEeCccccCCCCHHHHHH
Q 019861 196 AKSGLF------SLVVALDYSENMLKQCYEFVQQ-----------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVA 252 (334)
Q Consensus 196 ~~~~~~------~~v~giD~s~~~~~~a~~~~~~-----------------~~~~~~~~fD~V~~~~vl~h~~d~~~~L~ 252 (334)
.+.-.. .+|++.|+|+.|+..++++... +.||++++||..++.+.|..++++..+|+
T Consensus 119 l~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~ 198 (296)
T KOG1540|consen 119 LRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALR 198 (296)
T ss_pred HHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHH
Confidence 776433 6899999999999999987632 23799999999999999999999999999
Q ss_pred HHHHcccCCcEEEEEEeccCCCCCchHHHHHHH--------HHhhhh--------cCccCCCCHHHHHHHHHhCCCcEEE
Q 019861 253 EISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR--------QNMMQI--------SGSYTFLSEREIEDLCRACGLVDFK 316 (334)
Q Consensus 253 ~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~--------~~~~~~--------~~~~~~~t~~~l~~ll~~~Gf~~v~ 316 (334)
+++|+|||||++.+.++..........+...+. ..+... ....++.+.+++..+.+++||..+.
T Consensus 199 EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 199 EAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 999999999999998887654222222221111 111111 1234678899999999999998875
Q ss_pred ---EeecCcEEEEEEEc
Q 019861 317 ---CTRNRGFVMFTATK 330 (334)
Q Consensus 317 ---~~~~g~~~~~~a~K 330 (334)
..+.|...++.+-|
T Consensus 279 ~ye~lt~Gv~aIH~giK 295 (296)
T KOG1540|consen 279 GYENLTFGVVAIHSGIK 295 (296)
T ss_pred ccccceeeeeeeehhcc
Confidence 44556666655544
No 8
>PLN02244 tocopherol O-methyltransferase
Probab=99.83 E-value=7.3e-19 Score=163.42 Aligned_cols=143 Identities=21% Similarity=0.209 Sum_probs=108.5
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------CCCCCCCceEEEeCcc
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SNFPKDSIDAVHAGAA 240 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~~fD~V~~~~v 240 (334)
.++.+|||||||+|.++..+++.. ..+|+|+|+++.+++.++++.... .++++++||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999875 459999999999999998765421 1567889999999999
Q ss_pred ccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCC----CchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEE
Q 019861 241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF----NLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK 316 (334)
Q Consensus 241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~ 316 (334)
++|++|+..+++++.++|||||++++.++...... ...+........+........+.+.+++.++++++||++++
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~ 275 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIK 275 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeE
Confidence 99999999999999999999999999887543221 11111111111111111133456899999999999999987
Q ss_pred Eee
Q 019861 317 CTR 319 (334)
Q Consensus 317 ~~~ 319 (334)
...
T Consensus 276 ~~d 278 (340)
T PLN02244 276 TED 278 (340)
T ss_pred eee
Confidence 543
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.81 E-value=4.5e-19 Score=162.33 Aligned_cols=140 Identities=18% Similarity=0.164 Sum_probs=106.1
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------CCCCCCCceEEEeCcc
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SNFPKDSIDAVHAGAA 240 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~~fD~V~~~~v 240 (334)
.++.+|||||||+|.++..+++.+. +|+|+|+++.+++.|+++.... .++++++||+|++.++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 3567999999999999999988765 9999999999999999765321 1345679999999999
Q ss_pred ccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHH-HHHHHHHhhhhcCc--cCCCCHHHHHHHHHhCCCcEEEE
Q 019861 241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF-SRLLRQNMMQISGS--YTFLSEREIEDLCRACGLVDFKC 317 (334)
Q Consensus 241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~t~~~l~~ll~~~Gf~~v~~ 317 (334)
|||+.|+..+|+++.++|||||.+++.+++.......... ...+...+.....| ..+++++++.++++++||++++.
T Consensus 208 LeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 208 IEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred HHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999999999886421000000 00011111111112 35789999999999999998874
No 10
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.80 E-value=2.8e-19 Score=153.06 Aligned_cols=135 Identities=16% Similarity=0.239 Sum_probs=107.1
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCcccc
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAIH 242 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl~ 242 (334)
.++.+|||||||.|.++..+++.|. .|+|+|+++.+++.|+.+....+ ....++||+|+|..|||
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 4689999999999999999999996 99999999999999997755433 12237999999999999
Q ss_pred CCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHH--HHHHhh---hhcC--ccCCCCHHHHHHHHHhCCCcEE
Q 019861 243 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL--LRQNMM---QISG--SYTFLSEREIEDLCRACGLVDF 315 (334)
Q Consensus 243 h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~--~~~~~~---~~~~--~~~~~t~~~l~~ll~~~Gf~~v 315 (334)
|++||..+++.+.+++||||.++++++++.. ..++.. ...++. .... ...+.-++++..++...|+++.
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STinrt~----ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~ 211 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTINRTL----KAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKII 211 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEeccccCH----HHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEE
Confidence 9999999999999999999999999999742 222111 111111 1111 2347889999999999999877
Q ss_pred E
Q 019861 316 K 316 (334)
Q Consensus 316 ~ 316 (334)
+
T Consensus 212 ~ 212 (243)
T COG2227 212 D 212 (243)
T ss_pred e
Confidence 6
No 11
>PRK05785 hypothetical protein; Provisional
Probab=99.80 E-value=9.6e-19 Score=153.43 Aligned_cols=151 Identities=19% Similarity=0.123 Sum_probs=108.2
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh------cCCCCCCCCceEEEeCccccCCCCHHHHH
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ------QESNFPKDSIDAVHAGAAIHCWSSPSTGV 251 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~------~~~~~~~~~fD~V~~~~vl~h~~d~~~~L 251 (334)
+.+|||+|||+|.++..+++.. ..+++|+|+|++|++.|+++.. ...|+++++||+|++..+|+|++|+..+|
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l 130 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVI 130 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHHH
Confidence 6799999999999999999885 3499999999999999987532 12378899999999999999999999999
Q ss_pred HHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHh--------hh--------hcCccCCCCHHHHHHHHHhC-CCcE
Q 019861 252 AEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM--------MQ--------ISGSYTFLSEREIEDLCRAC-GLVD 314 (334)
Q Consensus 252 ~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~--------~~--------~~~~~~~~t~~~l~~ll~~~-Gf~~ 314 (334)
++++|+|||.+ .++.....+.. ....+...+.... .. ......+.+.+++.++++++ ++..
T Consensus 131 ~e~~RvLkp~~-~ile~~~p~~~-~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~~~~~ 208 (226)
T PRK05785 131 AEFTRVSRKQV-GFIAMGKPDNV-IKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYADIKV 208 (226)
T ss_pred HHHHHHhcCce-EEEEeCCCCcH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHhCceE
Confidence 99999999942 22222221111 1111111111000 00 11233577899999999995 4444
Q ss_pred EEEeecCcEEEEEEEcC
Q 019861 315 FKCTRNRGFVMFTATKP 331 (334)
Q Consensus 315 v~~~~~g~~~~~~a~K~ 331 (334)
.+..+.|...+++++|.
T Consensus 209 ~~~~~~G~~~~~~~~k~ 225 (226)
T PRK05785 209 YEERGLGLVYFVVGSSR 225 (226)
T ss_pred EEEccccEEEEEEEeeC
Confidence 55678899999999884
No 12
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.79 E-value=3.9e-18 Score=155.53 Aligned_cols=146 Identities=21% Similarity=0.326 Sum_probs=108.9
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH---HHhcCC----------CC-CCCCce
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE---FVQQES----------NF-PKDSID 233 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~---~~~~~~----------~~-~~~~fD 233 (334)
.+...+...++++|||||||+|.++..++..+. ..|+|+|+|+.|+.+++. ...... .+ ...+||
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD 190 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFD 190 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcC
Confidence 455566666788999999999999999988875 479999999999876432 211110 11 135899
Q ss_pred EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCc--hHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861 234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL--IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG 311 (334)
Q Consensus 234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G 311 (334)
+|++..+|+|+++|..+|++++++|+|||.+++.+...++.... .+. ..+......+..++.+++..+|+++|
T Consensus 191 ~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-----~ry~k~~nv~flpS~~~L~~~L~~aG 265 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-----DRYAKMKNVYFIPSVSALKNWLEKVG 265 (314)
T ss_pred EEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch-----HHHHhccccccCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999988766543211 111 11122223445679999999999999
Q ss_pred CcEEEEee
Q 019861 312 LVDFKCTR 319 (334)
Q Consensus 312 f~~v~~~~ 319 (334)
|++++...
T Consensus 266 F~~V~i~~ 273 (314)
T TIGR00452 266 FENFRILD 273 (314)
T ss_pred CeEEEEEe
Confidence 99998654
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.78 E-value=1.2e-17 Score=149.83 Aligned_cols=150 Identities=17% Similarity=0.261 Sum_probs=115.6
Q ss_pred HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------------CCCCCCC
Q 019861 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------------SNFPKDS 231 (334)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------------~~~~~~~ 231 (334)
+....+...+...++.+|||||||+|..+..++... ..+|+|+|+++.+++.++++.... .++++++
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 334556666777788999999999999998887753 359999999999999999875421 2467789
Q ss_pred ceEEEeCccccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861 232 IDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 309 (334)
Q Consensus 232 fD~V~~~~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~ 309 (334)
||+|++..+++|++ ++..+|++++++|||||++++.++....... +.......... ....+.+.+++.++|++
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 192 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN---WDEEFKAYIKK--RKYTLIPIQEYGDLIKS 192 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC---cHHHHHHHHHh--cCCCCCCHHHHHHHHHH
Confidence 99999999999987 7889999999999999999999886543211 11111111111 23456799999999999
Q ss_pred CCCcEEEEee
Q 019861 310 CGLVDFKCTR 319 (334)
Q Consensus 310 ~Gf~~v~~~~ 319 (334)
+||++++...
T Consensus 193 aGF~~v~~~d 202 (263)
T PTZ00098 193 CNFQNVVAKD 202 (263)
T ss_pred CCCCeeeEEe
Confidence 9999988654
No 14
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.78 E-value=4.1e-18 Score=152.50 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=110.9
Q ss_pred HHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCc
Q 019861 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSI 232 (334)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~f 232 (334)
+...+. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++..... ++.+++|
T Consensus 37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f 113 (255)
T PRK11036 37 LLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV 113 (255)
T ss_pred HHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence 344444 3467999999999999999999876 99999999999999998764321 2446799
Q ss_pred eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHH----HHHHHhhh----hcCccCCCCHHHHH
Q 019861 233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR----LLRQNMMQ----ISGSYTFLSEREIE 304 (334)
Q Consensus 233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~t~~~l~ 304 (334)
|+|++..+++|+.+|..+|+++.++|||||++++..++.+... ....+. ........ .......++++++.
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 192 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLL-MHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVY 192 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHH-HHHHHccChHHHHhcCccccccCCCCCCCCCHHHHH
Confidence 9999999999999999999999999999999999888764210 000000 00000000 00112457899999
Q ss_pred HHHHhCCCcEEEEeecCcEE
Q 019861 305 DLCRACGLVDFKCTRNRGFV 324 (334)
Q Consensus 305 ~ll~~~Gf~~v~~~~~g~~~ 324 (334)
++++++||+++.....+.+.
T Consensus 193 ~~l~~aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 193 QWLEEAGWQIMGKTGVRVFH 212 (255)
T ss_pred HHHHHCCCeEeeeeeEEEEe
Confidence 99999999998755443343
No 15
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.78 E-value=7.3e-18 Score=155.24 Aligned_cols=149 Identities=21% Similarity=0.323 Sum_probs=110.3
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH--Hhc-C------------CCCCCCC
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQ-E------------SNFPKDS 231 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~~-~------------~~~~~~~ 231 (334)
+.+...+.+..+.+|||||||+|.++..++..++ ..|+|+|+|+.++..++.. ... . .++ +++
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~ 189 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA 189 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC
Confidence 3555566666788999999999999999999875 3699999999988764432 211 1 133 678
Q ss_pred ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861 232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG 311 (334)
Q Consensus 232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G 311 (334)
||+|++..+++|+.+|..+|++++++|+|||.+++.+...++......+- ...+......+...+.+++..+|+++|
T Consensus 190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p---~~~y~~~~~~~~lps~~~l~~~L~~aG 266 (322)
T PRK15068 190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP---GDRYAKMRNVYFIPSVPALKNWLERAG 266 (322)
T ss_pred cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc---hhHHhcCccceeCCCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999877654332111100 011222223344569999999999999
Q ss_pred CcEEEEeec
Q 019861 312 LVDFKCTRN 320 (334)
Q Consensus 312 f~~v~~~~~ 320 (334)
|++++....
T Consensus 267 F~~i~~~~~ 275 (322)
T PRK15068 267 FKDVRIVDV 275 (322)
T ss_pred CceEEEEeC
Confidence 999886543
No 16
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.78 E-value=2.1e-18 Score=152.79 Aligned_cols=150 Identities=21% Similarity=0.335 Sum_probs=117.6
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHH---HHHhcCC------------CCCCCC
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY---EFVQQES------------NFPKDS 231 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~---~~~~~~~------------~~~~~~ 231 (334)
+.+...+....|++|||||||.|+++..++..|+ ..|+|+|++.....+.. +.+.... +. .+.
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~ 182 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGA 182 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCC
Confidence 4667777777899999999999999999999986 57999999987665432 3332211 22 578
Q ss_pred ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861 232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG 311 (334)
Q Consensus 232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G 311 (334)
||+|++..||.|..+|...|++++..|+|||.+++.+...++.....-. -...+..+.+.+...|...+..+|+++|
T Consensus 183 FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~---P~~rYa~m~nv~FiPs~~~L~~wl~r~g 259 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLV---PEDRYAKMRNVWFIPSVAALKNWLERAG 259 (315)
T ss_pred cCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEc---cCCcccCCCceEEeCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999988765332211 1123445555667789999999999999
Q ss_pred CcEEEEeecC
Q 019861 312 LVDFKCTRNR 321 (334)
Q Consensus 312 f~~v~~~~~g 321 (334)
|+.++.....
T Consensus 260 F~~v~~v~~~ 269 (315)
T PF08003_consen 260 FKDVRCVDVS 269 (315)
T ss_pred CceEEEecCc
Confidence 9999866543
No 17
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.77 E-value=8.9e-18 Score=150.35 Aligned_cols=148 Identities=18% Similarity=0.121 Sum_probs=107.9
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc----C--CCCCCCCceEEEeCccc
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ----E--SNFPKDSIDAVHAGAAI 241 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~----~--~~~~~~~fD~V~~~~vl 241 (334)
.+...+...++.+|||||||+|.++..+++..+..+++|+|+|+.|++.+++.... + ...++++||+|++..++
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l 99 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSNAAL 99 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEehhh
Confidence 44555666678899999999999999999987667999999999999999864110 0 01346789999999999
Q ss_pred cCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHH-----HHH-hhhh--cCccCCCCHHHHHHHHHhCCCc
Q 019861 242 HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL-----RQN-MMQI--SGSYTFLSEREIEDLCRACGLV 313 (334)
Q Consensus 242 ~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~-----~~~-~~~~--~~~~~~~t~~~l~~ll~~~Gf~ 313 (334)
||++++..++++++++|||||.+++..+..... ......... +.. .... .....+.+.+++.++|+++||+
T Consensus 100 ~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 178 (255)
T PRK14103 100 QWVPEHADLLVRWVDELAPGSWIAVQVPGNFDA-PSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCK 178 (255)
T ss_pred hhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCC-hhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCe
Confidence 999999999999999999999999986643111 111111111 111 1111 1123467999999999999997
Q ss_pred EEE
Q 019861 314 DFK 316 (334)
Q Consensus 314 ~v~ 316 (334)
+..
T Consensus 179 v~~ 181 (255)
T PRK14103 179 VDA 181 (255)
T ss_pred EEE
Confidence 543
No 18
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.76 E-value=8.4e-17 Score=142.27 Aligned_cols=164 Identities=23% Similarity=0.299 Sum_probs=120.9
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcC---------------CCCCCCC
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQE---------------SNFPKDS 231 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~~ 231 (334)
.+...+...++.+|||+|||+|.++..++..++ ..+++|+|+++.+++.+++++... .++++++
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 121 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNS 121 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCC
Confidence 334444444678999999999999999998875 579999999999999999876431 1234578
Q ss_pred ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHH----hhhh------------cCcc
Q 019861 232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN----MMQI------------SGSY 295 (334)
Q Consensus 232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~----~~~~------------~~~~ 295 (334)
||+|++.++++|+.++..+|+++.++|+|||.+++.+...............+... .... ....
T Consensus 122 ~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (239)
T PRK00216 122 FDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIR 201 (239)
T ss_pred ccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877654321111111100000 0000 0013
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEe--ecCcEEEEEEEcC
Q 019861 296 TFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATKP 331 (334)
Q Consensus 296 ~~~t~~~l~~ll~~~Gf~~v~~~--~~g~~~~~~a~K~ 331 (334)
.+++.+++.++++++||++++.. ..|.+.++.+.||
T Consensus 202 ~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 202 AFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred hCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 46789999999999999988854 4588999999986
No 19
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.75 E-value=7.2e-17 Score=144.17 Aligned_cols=143 Identities=26% Similarity=0.317 Sum_probs=112.1
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc---------CCCCCCCCceEEE
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---------ESNFPKDSIDAVH 236 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---------~~~~~~~~fD~V~ 236 (334)
.+.+.+.+...++.+|||+|||+|.++..++..+. +++|+|+|+.+++.++++... ..++++++||+|+
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~ 108 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAW 108 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEE
Confidence 34555666655678999999999999999988764 999999999999999987432 1256778999999
Q ss_pred eCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861 237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD 314 (334)
Q Consensus 237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~ 314 (334)
++.++++..|+..+|.++.++|+|||.++++++..... +.+...+...........+++.+++.+++...|+..
T Consensus 109 s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~----~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 109 SNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL----PELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred ECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch----HHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence 99999999999999999999999999999998876432 222222222222233457889999999999988864
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.75 E-value=8.3e-17 Score=156.66 Aligned_cols=146 Identities=19% Similarity=0.237 Sum_probs=113.1
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------CCCCCCCc
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------SNFPKDSI 232 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------~~~~~~~f 232 (334)
.+.+.+.+...++.+|||||||+|..+..++... ..+++|+|+|+.+++.|+++.... .++++++|
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 4455555555667899999999999998888764 459999999999999998765321 14567889
Q ss_pred eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCC
Q 019861 233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 312 (334)
Q Consensus 233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf 312 (334)
|+|++..+++|++|+..+|++++++|+|||.+++.++..........+ ...+.. .....++.+++.++++++||
T Consensus 334 D~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~----~~~~~~--~g~~~~~~~~~~~~l~~aGF 407 (475)
T PLN02336 334 DVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEF----AEYIKQ--RGYDLHDVQAYGQMLKDAGF 407 (475)
T ss_pred EEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHH----HHHHHh--cCCCCCCHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999998876432222221 111111 13457799999999999999
Q ss_pred cEEEEe
Q 019861 313 VDFKCT 318 (334)
Q Consensus 313 ~~v~~~ 318 (334)
+++...
T Consensus 408 ~~i~~~ 413 (475)
T PLN02336 408 DDVIAE 413 (475)
T ss_pred eeeeee
Confidence 988654
No 21
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.75 E-value=1.5e-16 Score=146.27 Aligned_cols=133 Identities=23% Similarity=0.256 Sum_probs=103.8
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----------CCCCCCCceEEEeCccccCCC
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----------SNFPKDSIDAVHAGAAIHCWS 245 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----------~~~~~~~fD~V~~~~vl~h~~ 245 (334)
++.+|||||||+|.++..+++..+..+++++|+++.+++.++++.... .++++++||+|++..+++|++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 467999999999999888887654569999999999999998865321 246678999999999999999
Q ss_pred CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEee
Q 019861 246 SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 319 (334)
Q Consensus 246 d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~ 319 (334)
++..+|+++.++|+|||++++..+.... .+.... +.. ....+.+.+++.++++++||+.++...
T Consensus 193 d~~~~L~e~~rvLkPGG~LvIi~~~~p~-----~~~~r~---~~~--~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 193 DPQRGIKEAYRVLKIGGKACLIGPVHPT-----FWLSRF---FAD--VWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CHHHHHHHHHHhcCCCcEEEEEEecCcc-----hhHHHH---hhh--hhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 9999999999999999999887654321 111111 000 011246899999999999999888554
No 22
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=1.2e-17 Score=148.78 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=113.1
Q ss_pred CCCcEEEECCCcCHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCccc
Q 019861 177 LGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAI 241 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl 241 (334)
++.+|||||||+|..+..+++. .+..+++|+|+|+.|++.|++++.... ..+...+|+|++..++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 4689999999999998888773 456799999999999999999875321 1233569999999999
Q ss_pred cCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhh---h------------hcCccCCCCHHHHH
Q 019861 242 HCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM---Q------------ISGSYTFLSEREIE 304 (334)
Q Consensus 242 ~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~t~~~l~ 304 (334)
+|+++. ..++++++++|+|||.+++.+..........+.....+..+. + ..+.....+.++..
T Consensus 136 ~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~ 215 (247)
T PRK15451 136 QFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHK 215 (247)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHH
Confidence 999743 579999999999999999988665433223332222111111 0 11133457999999
Q ss_pred HHHHhCCCcEEEEee-cCcEEEEEEEcCC
Q 019861 305 DLCRACGLVDFKCTR-NRGFVMFTATKPS 332 (334)
Q Consensus 305 ~ll~~~Gf~~v~~~~-~g~~~~~~a~K~~ 332 (334)
++|+++||+.++... ...+..+.+.|++
T Consensus 216 ~~L~~aGF~~v~~~~~~~~f~~~~a~k~~ 244 (247)
T PRK15451 216 ARLHKAGFEHSELWFQCFNFGSLVALKAE 244 (247)
T ss_pred HHHHHcCchhHHHHHHHHhHHHHhheecc
Confidence 999999998887543 3456667777754
No 23
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.73 E-value=1.3e-17 Score=143.67 Aligned_cols=137 Identities=22% Similarity=0.285 Sum_probs=105.2
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC----------C-------CCCCceEEEeCcc
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN----------F-------PKDSIDAVHAGAA 240 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~----------~-------~~~~fD~V~~~~v 240 (334)
|.+|||+|||+|.++..|++.|. .|+|+|+++.+++.|++....+.. + ..+.||+|+|..+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 47899999999999999999986 999999999999999988332221 1 1356999999999
Q ss_pred ccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchH-HHHHHHHHhhhhcCc--cCCCCHHHHHHHHHhCCCcEEE
Q 019861 241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP-FSRLLRQNMMQISGS--YTFLSEREIEDLCRACGLVDFK 316 (334)
Q Consensus 241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~t~~~l~~ll~~~Gf~~v~ 316 (334)
+||+.||..++..+.+.|||||.+++++.++........ ++...-..+.....| ..+.+++++..+++..|+++..
T Consensus 168 leHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~ 246 (282)
T KOG1270|consen 168 LEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVND 246 (282)
T ss_pred HHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhh
Confidence 999999999999999999999999999999853321111 111111111111112 3588999999999999998765
No 24
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.73 E-value=3.2e-17 Score=145.40 Aligned_cols=153 Identities=13% Similarity=0.123 Sum_probs=110.1
Q ss_pred CCCcEEEECCCcCHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCccc
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAI 241 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl 241 (334)
++.+|||+|||+|.++..+++.. +..+++|+|+|+.|++.|++++.... .++...+|+|++..++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l 132 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 132 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence 46799999999999999998763 46799999999999999998765421 1233468999999999
Q ss_pred cCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhh---------------hhcCccCCCCHHHHH
Q 019861 242 HCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM---------------QISGSYTFLSEREIE 304 (334)
Q Consensus 242 ~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~t~~~l~ 304 (334)
+|+++ +..+|++++++|+|||.+++.++.........+.+...+..+. ...++...++.+++.
T Consensus 133 ~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~ 212 (239)
T TIGR00740 133 QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETHK 212 (239)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHHH
Confidence 99974 4789999999999999999998765432222222222211111 112245678999999
Q ss_pred HHHHhCCCcEEEEe-ecCcEEEEEEE
Q 019861 305 DLCRACGLVDFKCT-RNRGFVMFTAT 329 (334)
Q Consensus 305 ~ll~~~Gf~~v~~~-~~g~~~~~~a~ 329 (334)
++++++||+.++.. ..+.+..++++
T Consensus 213 ~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 213 ARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred HHHHHcCCchHHHHHHHHhHhHHhee
Confidence 99999999877643 22334444444
No 25
>PRK08317 hypothetical protein; Provisional
Probab=99.72 E-value=3.3e-16 Score=138.33 Aligned_cols=151 Identities=28% Similarity=0.305 Sum_probs=112.9
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcC-------------CCCCCCCc
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQE-------------SNFPKDSI 232 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~-------------~~~~~~~f 232 (334)
+.+.+.+...++.+|||+|||+|.++..++... +..+++|+|+++.+++.++++.... .++++++|
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 445566666778899999999999999998875 5679999999999999998872211 13556899
Q ss_pred eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCC---CchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861 233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF---NLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 309 (334)
Q Consensus 233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~ 309 (334)
|+|++..+++|+.++..+++++.++|+|||.+++.++...... ............+.. .....++...+.+++++
T Consensus 89 D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 166 (241)
T PRK08317 89 DAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD--HFADPWLGRRLPGLFRE 166 (241)
T ss_pred eEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887543211 111122222222221 12345567899999999
Q ss_pred CCCcEEEEee
Q 019861 310 CGLVDFKCTR 319 (334)
Q Consensus 310 ~Gf~~v~~~~ 319 (334)
+||++++...
T Consensus 167 aGf~~~~~~~ 176 (241)
T PRK08317 167 AGLTDIEVEP 176 (241)
T ss_pred cCCCceeEEE
Confidence 9998876433
No 26
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.72 E-value=8e-16 Score=134.55 Aligned_cols=160 Identities=21% Similarity=0.311 Sum_probs=115.9
Q ss_pred cccCCCCCCcEEEECCCcCHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHhcC------------CCCCCCCceEEEe
Q 019861 171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQE------------SNFPKDSIDAVHA 237 (334)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~------------~~~~~~~fD~V~~ 237 (334)
..+...++.+|||+|||+|.++..+++.++. .+++|+|+++.+++.++++.... .++++++||+|++
T Consensus 33 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~ 112 (223)
T TIGR01934 33 KLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTI 112 (223)
T ss_pred HHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEE
Confidence 3344446789999999999999999988764 68999999999999998875411 1345678999999
Q ss_pred CccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhh----h----h--------cCccCCCCHH
Q 019861 238 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM----Q----I--------SGSYTFLSER 301 (334)
Q Consensus 238 ~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~----~----~--------~~~~~~~t~~ 301 (334)
..+++|+.++..+++++.+.|+|||++++.+...............+...+. . . .....+++.+
T Consensus 113 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (223)
T TIGR01934 113 AFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQE 192 (223)
T ss_pred eeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999987754332111111111111000 0 0 0113467899
Q ss_pred HHHHHHHhCCCcEEE--EeecCcEEEEEEEc
Q 019861 302 EIEDLCRACGLVDFK--CTRNRGFVMFTATK 330 (334)
Q Consensus 302 ~l~~ll~~~Gf~~v~--~~~~g~~~~~~a~K 330 (334)
++.++|+++||+++. ....+...+++++|
T Consensus 193 ~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 193 ELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 999999999998766 44556566777665
No 27
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.71 E-value=1.1e-15 Score=138.24 Aligned_cols=140 Identities=21% Similarity=0.272 Sum_probs=105.2
Q ss_pred CCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCceEEEeC
Q 019861 174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSIDAVHAG 238 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~fD~V~~~ 238 (334)
...++.+|||+|||+|..+..++.. ++..+++|+|+++.+++.++++.... .++++++||+|++.
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 3456889999999999887766654 55568999999999999999865421 14557799999999
Q ss_pred ccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861 239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 317 (334)
Q Consensus 239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~ 317 (334)
.+++|++++..+++++.++|||||++++.+...... ...........+. ......++.+++.++++++||..++.
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE--LPEEIRNDAELYA--GCVAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC--CCHHHHHhHHHHh--ccccCCCCHHHHHHHHHHCCCCceEE
Confidence 999999999999999999999999999988765432 1111111111111 11234568899999999999988764
No 28
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=1.8e-16 Score=140.43 Aligned_cols=152 Identities=17% Similarity=0.172 Sum_probs=119.8
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCce
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSID 233 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD 233 (334)
.+.+.+.++..+|.+|||||||.|.++..+++.+ +++|+|+++|+++.+.+++++...+ ....+.||
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fD 139 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFD 139 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccc
Confidence 4677788888999999999999999999999997 5799999999999999999766443 12245599
Q ss_pred EEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861 234 AVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG 311 (334)
Q Consensus 234 ~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G 311 (334)
-|++..++||+.. ...+++.++++|+|||.+++.+......... ....+...++.+ .....+...+.+..+++|
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~~~~~i~~yiFP---gG~lPs~~~i~~~~~~~~ 215 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-RFPDFIDKYIFP---GGELPSISEILELASEAG 215 (283)
T ss_pred eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-cchHHHHHhCCC---CCcCCCHHHHHHHHHhcC
Confidence 9999999999985 7899999999999999999988876543221 111222223222 445668899999999999
Q ss_pred CcEEEEeecCc
Q 019861 312 LVDFKCTRNRG 322 (334)
Q Consensus 312 f~~v~~~~~g~ 322 (334)
|.+.+....+.
T Consensus 216 ~~v~~~~~~~~ 226 (283)
T COG2230 216 FVVLDVESLRP 226 (283)
T ss_pred cEEehHhhhcH
Confidence 99988666554
No 29
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.70 E-value=5.8e-17 Score=121.99 Aligned_cols=84 Identities=37% Similarity=0.614 Sum_probs=73.3
Q ss_pred EEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----------CCCCCCCceEEEeCccccCCCCHHHH
Q 019861 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----------SNFPKDSIDAVHAGAAIHCWSSPSTG 250 (334)
Q Consensus 182 LDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----------~~~~~~~fD~V~~~~vl~h~~d~~~~ 250 (334)
||+|||+|..+..+++. +..+++|+|+++.+++.++++.... .++++++||+|++..+++|++++..+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~ 79 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAA 79 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHH
Confidence 89999999999999999 3459999999999999999987643 26889999999999999999999999
Q ss_pred HHHHHHcccCCcEEEE
Q 019861 251 VAEISRVLRPGGVFVG 266 (334)
Q Consensus 251 L~~i~r~LkpgG~lii 266 (334)
++++.|+|||||++++
T Consensus 80 l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 80 LREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHEEEEEEEEE
T ss_pred HHHHHHHcCcCeEEeC
Confidence 9999999999999986
No 30
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.70 E-value=1.6e-16 Score=142.66 Aligned_cols=152 Identities=20% Similarity=0.193 Sum_probs=105.1
Q ss_pred HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCC
Q 019861 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDS 231 (334)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~ 231 (334)
..+.+.+.+...+|.+|||||||.|.++..+++.+ .++|+|+.+|++..+.+++++...+ .+ +.+
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-~~~ 127 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-PGK 127 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----S
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-CCC
Confidence 34677788888899999999999999999999995 4699999999999999999877543 12 349
Q ss_pred ceEEEeCccccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHH---HHHHHHHhhhhcCccCCCCHHHHHHH
Q 019861 232 IDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF---SRLLRQNMMQISGSYTFLSEREIEDL 306 (334)
Q Consensus 232 fD~V~~~~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~t~~~l~~l 306 (334)
||.|++..++||+. +...+++++.++|+|||++++.............. ...+..++. +.....+..++...
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiF---Pgg~lps~~~~~~~ 204 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIF---PGGYLPSLSEILRA 204 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTS---TTS---BHHHHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeC---CCCCCCCHHHHHHH
Confidence 99999999999995 56799999999999999999887765321100000 011222222 23456688999999
Q ss_pred HHhCCCcEEEEeecC
Q 019861 307 CRACGLVDFKCTRNR 321 (334)
Q Consensus 307 l~~~Gf~~v~~~~~g 321 (334)
+++.||++.+....+
T Consensus 205 ~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 205 AEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHTT-EEEEEEE-H
T ss_pred HhcCCEEEEEEEEcC
Confidence 999999988876554
No 31
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.69 E-value=5e-16 Score=139.29 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=107.0
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------CCCCCCceEEEeC
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------NFPKDSIDAVHAG 238 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~~~~~~fD~V~~~ 238 (334)
+.+...+...++.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++..... ..++++||+|+++
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 100 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFAN 100 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEEc
Confidence 34555566667889999999999999999988766799999999999999998754211 1245689999999
Q ss_pred ccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHH------HHHHhhhhc-CccCCCCHHHHHHHHHhCC
Q 019861 239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL------LRQNMMQIS-GSYTFLSEREIEDLCRACG 311 (334)
Q Consensus 239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~t~~~l~~ll~~~G 311 (334)
.+++|++|+..+++++.++|+|||.+++..+....... ...... +...+.... ....+.+.+++.+++.++|
T Consensus 101 ~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g 179 (258)
T PRK01683 101 ASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPS-HVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAA 179 (258)
T ss_pred cChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHH-HHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999997654211100 000110 011111100 1234568889999999999
Q ss_pred CcE
Q 019861 312 LVD 314 (334)
Q Consensus 312 f~~ 314 (334)
+.+
T Consensus 180 ~~v 182 (258)
T PRK01683 180 CRV 182 (258)
T ss_pred Cce
Confidence 864
No 32
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.69 E-value=5.3e-16 Score=136.15 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=103.8
Q ss_pred CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCccccC
Q 019861 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGAAIHC 243 (334)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~vl~h 243 (334)
++|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...+ ++ .++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-PDTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-CCCCCEeehHHHHHh
Confidence 37999999999999999988766799999999999999998764311 12 358999999999999
Q ss_pred CCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecC
Q 019861 244 WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR 321 (334)
Q Consensus 244 ~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g 321 (334)
+.++..++++++++|+|||++++.++..+..... ........+.+.++|.++++++||++++....+
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~ 146 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAI-----------EHEETTSYLVTREEWAELLARNNLRVVEGVDAS 146 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccc-----------cccccccccCCHHHHHHHHHHCCCeEEEeEECc
Confidence 9999999999999999999999988754321000 000012236789999999999999998866544
No 33
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.68 E-value=1.7e-16 Score=132.21 Aligned_cols=146 Identities=17% Similarity=0.264 Sum_probs=109.4
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh---------cCCCCCCCCceEEEe
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ---------QESNFPKDSIDAVHA 237 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~---------~~~~~~~~~fD~V~~ 237 (334)
+.|.+++.+ +.+|||+|||.|.++..|.+.- .+..+|+|++++.+..+.++-- +...|++++||.|++
T Consensus 5 ~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 5 QIIAEWIEP--GSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred HHHHHHcCC--CCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEeh
Confidence 456666666 8999999999999999999863 5799999999999888876521 123589999999999
Q ss_pred CccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHH--------HHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861 238 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS--------RLLRQNMMQISGSYTFLSEREIEDLCRA 309 (334)
Q Consensus 238 ~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~t~~~l~~ll~~ 309 (334)
+.+|+++.+|..+|+++.|+ |...+++.||...+......+ ..+...+. .....+++|..++++++++
T Consensus 82 sqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WY-dTPNih~~Ti~DFe~lc~~ 157 (193)
T PF07021_consen 82 SQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWY-DTPNIHLCTIKDFEDLCRE 157 (193)
T ss_pred HhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCccc-CCCCcccccHHHHHHHHHH
Confidence 99999999999999998665 678899999864221111110 00000000 1346678999999999999
Q ss_pred CCCcEEEEee
Q 019861 310 CGLVDFKCTR 319 (334)
Q Consensus 310 ~Gf~~v~~~~ 319 (334)
.|+++++...
T Consensus 158 ~~i~I~~~~~ 167 (193)
T PF07021_consen 158 LGIRIEERVF 167 (193)
T ss_pred CCCEEEEEEE
Confidence 9999988543
No 34
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.66 E-value=1.8e-15 Score=133.61 Aligned_cols=131 Identities=25% Similarity=0.381 Sum_probs=105.0
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc----------CCCCCCCCceEEEeCccccCCCC
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ----------ESNFPKDSIDAVHAGAAIHCWSS 246 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~----------~~~~~~~~fD~V~~~~vl~h~~d 246 (334)
.+.+|||+|||+|.++..+++.++..+++|+|+++.+++.+++.... ..++++++||+|++.++++|+.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 35789999999999999999998877899999999999999887542 12456789999999999999999
Q ss_pred HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861 247 PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 317 (334)
Q Consensus 247 ~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~ 317 (334)
+..+|+++.++|+|||.+++.++..... .. ....... ....+++.+++.++++++ |+.+..
T Consensus 114 ~~~~l~~~~~~L~~~G~l~~~~~~~~~~---~~----~~~~~~~--~~~~~~~~~~~~~~l~~~-f~~~~~ 174 (240)
T TIGR02072 114 LSQALSELARVLKPGGLLAFSTFGPGTL---HE----LRQSFGQ--HGLRYLSLDELKALLKNS-FELLTL 174 (240)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCccCH---HH----HHHHHHH--hccCCCCHHHHHHHHHHh-cCCcEE
Confidence 9999999999999999999998765431 11 1111111 245678999999999998 876553
No 35
>PRK06202 hypothetical protein; Provisional
Probab=99.65 E-value=2.1e-15 Score=133.15 Aligned_cols=144 Identities=15% Similarity=0.081 Sum_probs=101.7
Q ss_pred CCCCCCcEEEECCCcCHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHHHHhcC-----------CCCCCCCceEEEeC
Q 019861 174 KPVLGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQE-----------SNFPKDSIDAVHAG 238 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~~~-----------~~~~~~~fD~V~~~ 238 (334)
...++.+|||+|||+|.++..+++ .++..+++|+|+++.+++.|+++.... .+.++++||+|+++
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 334567999999999998888765 355569999999999999998875321 13456899999999
Q ss_pred ccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHh-------hhhcCccCCCCHHHHHHHHHh
Q 019861 239 AAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM-------MQISGSYTFLSEREIEDLCRA 309 (334)
Q Consensus 239 ~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~t~~~l~~ll~~ 309 (334)
++|||++++ ..+|+++.++++ |.+++.+........ ........... .....+.++|+.+++.+++++
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~ 213 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAY-ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ 213 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHH-HHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC
Confidence 999999986 479999999998 666776666532100 00000011110 011224578999999999999
Q ss_pred CCCcEEEEeecC
Q 019861 310 CGLVDFKCTRNR 321 (334)
Q Consensus 310 ~Gf~~v~~~~~g 321 (334)
||++...+...
T Consensus 214 -Gf~~~~~~~~~ 224 (232)
T PRK06202 214 -GWRVERQWPFR 224 (232)
T ss_pred -CCeEEecccee
Confidence 99987755443
No 36
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.65 E-value=4.5e-15 Score=127.63 Aligned_cols=130 Identities=20% Similarity=0.220 Sum_probs=97.2
Q ss_pred HHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceE
Q 019861 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDA 234 (334)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~ 234 (334)
+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++..... ++ +++||+
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~ 98 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDF 98 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCE
Confidence 34444455678999999999999999999876 99999999999999987654321 12 457999
Q ss_pred EEeCccccCCC--CHHHHHHHHHHcccCCcEEEEEEec-cCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861 235 VHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYI-VDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG 311 (334)
Q Consensus 235 V~~~~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G 311 (334)
|++..+++|++ +...+++++.++|+|||++++.... .+.... ..+....++.+++.++++ |
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~--------------~~~~~~~~~~~el~~~~~--~ 162 (197)
T PRK11207 99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC--------------TVGFPFAFKEGELRRYYE--G 162 (197)
T ss_pred EEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC--------------CCCCCCccCHHHHHHHhC--C
Confidence 99999999886 4568999999999999996654433 221100 001124578999999997 8
Q ss_pred CcEEEE
Q 019861 312 LVDFKC 317 (334)
Q Consensus 312 f~~v~~ 317 (334)
|+++..
T Consensus 163 ~~~~~~ 168 (197)
T PRK11207 163 WEMVKY 168 (197)
T ss_pred CeEEEe
Confidence 988774
No 37
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.65 E-value=3.6e-15 Score=128.00 Aligned_cols=133 Identities=16% Similarity=0.194 Sum_probs=97.8
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceE
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDA 234 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~ 234 (334)
.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++..... ++ +++||+
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~ 97 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDF 97 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCE
Confidence 344455555578999999999999999999875 99999999999999887654211 12 357999
Q ss_pred EEeCccccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCC
Q 019861 235 VHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 312 (334)
Q Consensus 235 V~~~~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf 312 (334)
|++..+++|+. +...++++++++|+|||++++.+......... . ......++++++.++++ +|
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~------------~-~~~~~~~~~~el~~~f~--~~ 162 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC------------H-MPFSFTFKEDELRQYYA--DW 162 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC------------C-CCcCccCCHHHHHHHhC--CC
Confidence 99999999986 34689999999999999976655432211000 0 11224679999999996 58
Q ss_pred cEEEEe
Q 019861 313 VDFKCT 318 (334)
Q Consensus 313 ~~v~~~ 318 (334)
+++...
T Consensus 163 ~~~~~~ 168 (195)
T TIGR00477 163 ELLKYN 168 (195)
T ss_pred eEEEee
Confidence 777643
No 38
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.64 E-value=2.7e-15 Score=124.65 Aligned_cols=155 Identities=17% Similarity=0.229 Sum_probs=110.8
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCC
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDS 231 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~ 231 (334)
.+..++.......|||||||+|..-.++... +...|+++|+++.|-+.+.+.+.+.. .+++++
T Consensus 67 ~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s 145 (252)
T KOG4300|consen 67 GIYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGS 145 (252)
T ss_pred hhHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCC
Confidence 3344555544567899999999887766543 34699999999999999987765432 257899
Q ss_pred ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhh----cCccCCCCHHHHHHHH
Q 019861 232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI----SGSYTFLSEREIEDLC 307 (334)
Q Consensus 232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~t~~~l~~ll 307 (334)
+|+|++..+|....||...|+++.|+|+|||++++.+...... .+..++++..... ......++.+ ..+.|
T Consensus 146 ~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y----~~~n~i~q~v~ep~~~~~~dGC~ltrd-~~e~L 220 (252)
T KOG4300|consen 146 YDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEY----GFWNRILQQVAEPLWHLESDGCVLTRD-TGELL 220 (252)
T ss_pred eeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccc----hHHHHHHHHHhchhhheeccceEEehh-HHHHh
Confidence 9999999999999999999999999999999999999887543 2223333322221 1111234444 45778
Q ss_pred HhCCCcEEEE--eecCcEEEEEE
Q 019861 308 RACGLVDFKC--TRNRGFVMFTA 328 (334)
Q Consensus 308 ~~~Gf~~v~~--~~~g~~~~~~a 328 (334)
+++-|...+. ...|..+++++
T Consensus 221 eda~f~~~~~kr~~~~ttw~~V~ 243 (252)
T KOG4300|consen 221 EDAEFSIDSCKRFNFGTTWVIVE 243 (252)
T ss_pred hhcccccchhhcccCCceEEEEe
Confidence 8999988773 44565555444
No 39
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.64 E-value=1.2e-15 Score=125.83 Aligned_cols=132 Identities=19% Similarity=0.328 Sum_probs=95.5
Q ss_pred CCCcEEEECCCcCHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCC---CCCceEEEeCcc
Q 019861 177 LGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQES------------NFP---KDSIDAVHAGAA 240 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~---~~~fD~V~~~~v 240 (334)
.+.+|||+|||+|.++..++ ..++..+++|+|+++.+++.|++++.... .++ .+.||+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 46799999999999999999 55667799999999999999999754321 122 168999999999
Q ss_pred ccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhc-Ccc-CCCCHHHHHHHHHhCC
Q 019861 241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQIS-GSY-TFLSEREIEDLCRACG 311 (334)
Q Consensus 241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~t~~~l~~ll~~~G 311 (334)
++|+.++..+++++.+.|++||.+++.++.... .....+........... .+. .. +.+++..+++++|
T Consensus 83 l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFPDPEKVLKNIIRLLKPGGILIISDPNHND--ELPEQLEELMNLYSEVWSMIYIGN-DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSH--HHHHHHHHHHHHHHHHHHHCC----CCCGHHHHHHHTT
T ss_pred hhhccCHHHHHHHHHHHcCCCcEEEEEECChHH--HHHHHHHHHHHHHHHHhhhhhccc-CHHHHHHHHHhcC
Confidence 999999999999999999999999999988211 00011111111001100 011 12 7889999999988
No 40
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.63 E-value=9.4e-15 Score=129.01 Aligned_cols=150 Identities=18% Similarity=0.265 Sum_probs=109.3
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------C---CCCCCc
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------N---FPKDSI 232 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~---~~~~~f 232 (334)
+.+...+...++.+|||||||+|.++..+.+.+. +++++|+++.+++.++++..... . ..++.|
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 115 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQF 115 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCc
Confidence 3455555556688999999999999999988764 89999999999999987654221 1 235789
Q ss_pred eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHH-HHH-HHHhhh-hcCccCCCCHHHHHHHHHh
Q 019861 233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS-RLL-RQNMMQ-ISGSYTFLSEREIEDLCRA 309 (334)
Q Consensus 233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~~~~~~t~~~l~~ll~~ 309 (334)
|+|++.++++|+.++..+|+.+.+.|+|||.+++..+............ ... ...... ...+..+++.+++.+++++
T Consensus 116 D~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 195 (233)
T PRK05134 116 DVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQ 195 (233)
T ss_pred cEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999877532110000000 000 000001 1123467899999999999
Q ss_pred CCCcEEEEe
Q 019861 310 CGLVDFKCT 318 (334)
Q Consensus 310 ~Gf~~v~~~ 318 (334)
+||++++..
T Consensus 196 ~Gf~~v~~~ 204 (233)
T PRK05134 196 AGLEVQDIT 204 (233)
T ss_pred CCCeEeeee
Confidence 999988753
No 41
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.62 E-value=8.3e-17 Score=122.77 Aligned_cols=83 Identities=27% Similarity=0.418 Sum_probs=61.1
Q ss_pred EEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeCccccCCC
Q 019861 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAGAAIHCWS 245 (334)
Q Consensus 182 LDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~~vl~h~~ 245 (334)
||||||+|.++..+.+..+..+++|+|+|+.+++.+++++.... ....++||+|++..++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999999777899999999999987776655432 11125999999999999999
Q ss_pred CHHHHHHHHHHcccCCcEE
Q 019861 246 SPSTGVAEISRVLRPGGVF 264 (334)
Q Consensus 246 d~~~~L~~i~r~LkpgG~l 264 (334)
++..+|+.++++|+|||+|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
No 42
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.61 E-value=3.7e-14 Score=130.37 Aligned_cols=148 Identities=16% Similarity=0.129 Sum_probs=107.4
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------C-C--CCCCce
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------N-F--PKDSID 233 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~-~--~~~~fD 233 (334)
+.+.+.+...++.+|||||||+|.++..+++.+|..+++++|. +.+++.++++..... . + +-..+|
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D 217 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEAD 217 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCC
Confidence 4455555556678999999999999999999998889999997 789999887655321 1 1 123479
Q ss_pred EEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhh---cCccCCCCHHHHHHHHH
Q 019861 234 AVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI---SGSYTFLSEREIEDLCR 308 (334)
Q Consensus 234 ~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~t~~~l~~ll~ 308 (334)
+|++.+++|++.+. ..+|++++++|+|||++++.+...+... .+....+....... .....+.+.+++.++|+
T Consensus 218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~ 295 (306)
T TIGR02716 218 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNFDYLSHYILGAGMPFSVLGFKEQARYKEILE 295 (306)
T ss_pred EEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--CchhhHHHHHHHHcccccccccCCCHHHHHHHHH
Confidence 99999999999765 4799999999999999999988664322 22222222211110 11223456899999999
Q ss_pred hCCCcEEEE
Q 019861 309 ACGLVDFKC 317 (334)
Q Consensus 309 ~~Gf~~v~~ 317 (334)
++||+.++.
T Consensus 296 ~aGf~~v~~ 304 (306)
T TIGR02716 296 SLGYKDVTM 304 (306)
T ss_pred HcCCCeeEe
Confidence 999998764
No 43
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.60 E-value=4.4e-15 Score=115.65 Aligned_cols=92 Identities=29% Similarity=0.409 Sum_probs=75.8
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------CC-----CCCCceEEEeCc-c
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------NF-----PKDSIDAVHAGA-A 240 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~~-----~~~~fD~V~~~~-v 240 (334)
|+.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++..... .+ ..+.||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 4789999999999999999996556799999999999999999883211 12 235799999999 5
Q ss_pred ccCCC---CHHHHHHHHHHcccCCcEEEEEE
Q 019861 241 IHCWS---SPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 241 l~h~~---d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
++++. +...+|+++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55443 45789999999999999999976
No 44
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.59 E-value=3.2e-14 Score=129.50 Aligned_cols=124 Identities=18% Similarity=0.197 Sum_probs=94.6
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEEEeCccccCC
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAVHAGAAIHCW 244 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V~~~~vl~h~ 244 (334)
++++|||+|||+|.++..++..+. +|+|+|+|+.+++.++++..... ...+++||+|++..+++|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 356999999999999999999875 99999999999999987755321 1125789999999999998
Q ss_pred C--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861 245 S--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 317 (334)
Q Consensus 245 ~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~ 317 (334)
. +...+++++.++|+|||++++..+....... ........++.+++.++++. |++++.
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~-------------~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP-------------CPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC-------------CCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 6 4468999999999999997776554321100 00112356889999999964 888764
No 45
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.59 E-value=4.1e-14 Score=129.33 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=98.1
Q ss_pred HHHHHHHHcccCC---CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------C-------
Q 019861 163 EKEFELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------S------- 225 (334)
Q Consensus 163 ~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------~------- 225 (334)
+...+.+.+++.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++.... .
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~ 204 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN 204 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc
Confidence 3334444445432 3578999999999999999999875 9999999999999999886532 0
Q ss_pred C--CCCCCceEEEeCccccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCc--cCCCC
Q 019861 226 N--FPKDSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS--YTFLS 299 (334)
Q Consensus 226 ~--~~~~~fD~V~~~~vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~t 299 (334)
. ..+++||+|++..+++|+++.. .+++.+.+ +.+||.++...+.. .....+......+.....+ ..+++
T Consensus 205 Dl~~l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~----~~~~~l~~~g~~~~g~~~~~r~y~~s 279 (315)
T PLN02585 205 DLESLSGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKT----LYYDILKRIGELFPGPSKATRAYLHA 279 (315)
T ss_pred chhhcCCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcc----hHHHHHHHHHhhcCCCCcCceeeeCC
Confidence 1 1257899999999999998653 45666664 45555544322221 1111122222222221111 23458
Q ss_pred HHHHHHHHHhCCCcEEEEe
Q 019861 300 EREIEDLCRACGLVDFKCT 318 (334)
Q Consensus 300 ~~~l~~ll~~~Gf~~v~~~ 318 (334)
.++++++++++||++....
T Consensus 280 ~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 280 EADVERALKKAGWKVARRE 298 (315)
T ss_pred HHHHHHHHHHCCCEEEEEE
Confidence 9999999999999987743
No 46
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.59 E-value=1.8e-14 Score=123.70 Aligned_cols=146 Identities=15% Similarity=0.152 Sum_probs=99.1
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHH--------hcC-CCCCCCCceEEEeC
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV--------QQE-SNFPKDSIDAVHAG 238 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~--------~~~-~~~~~~~fD~V~~~ 238 (334)
.+.+.++ ++.+|||+|||+|.++..+++.. ...++|+|+++.+++.+++.- ... .++++++||+|++.
T Consensus 6 ~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 6 SILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred HHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEh
Confidence 4444544 36799999999999999887664 347899999999999887531 111 13567899999999
Q ss_pred ccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHH-HHHHh------hhhcCccCCCCHHHHHHHHHhCC
Q 019861 239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL-LRQNM------MQISGSYTFLSEREIEDLCRACG 311 (334)
Q Consensus 239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~t~~~l~~ll~~~G 311 (334)
++++|+.|+..+|+++.+.++ .+++..++............. ..... .....+.++++.+++.++++++|
T Consensus 83 ~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G 159 (194)
T TIGR02081 83 QTLQATRNPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN 159 (194)
T ss_pred hHhHcCcCHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC
Confidence 999999999999999888765 455655553211000000000 00000 00112456899999999999999
Q ss_pred CcEEEEee
Q 019861 312 LVDFKCTR 319 (334)
Q Consensus 312 f~~v~~~~ 319 (334)
|++++...
T Consensus 160 f~v~~~~~ 167 (194)
T TIGR02081 160 LRILDRAA 167 (194)
T ss_pred CEEEEEEE
Confidence 99988543
No 47
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.58 E-value=9.7e-14 Score=121.70 Aligned_cols=137 Identities=19% Similarity=0.300 Sum_probs=103.3
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCC-CCCceEEEeCccc
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFP-KDSIDAVHAGAAI 241 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~-~~~fD~V~~~~vl 241 (334)
.+.+|||+|||+|.++..+++.+. .++|+|+++.+++.++++..... +.. .++||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 467999999999999999988765 79999999999999988654321 111 3689999999999
Q ss_pred cCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHH-Hh---h-h-hcCccCCCCHHHHHHHHHhCCCcEE
Q 019861 242 HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ-NM---M-Q-ISGSYTFLSEREIEDLCRACGLVDF 315 (334)
Q Consensus 242 ~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~-~~---~-~-~~~~~~~~t~~~l~~ll~~~Gf~~v 315 (334)
+|+.++..+|+++.++|+|||.+++.+++.... ..+...... .. . . ......+++.+++.++++++||+++
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~ 199 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPK---SYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVK 199 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCch---HHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeee
Confidence 999999999999999999999999988764321 111110000 01 0 0 0112357799999999999999998
Q ss_pred EEe
Q 019861 316 KCT 318 (334)
Q Consensus 316 ~~~ 318 (334)
+..
T Consensus 200 ~~~ 202 (224)
T TIGR01983 200 DVK 202 (224)
T ss_pred eee
Confidence 754
No 48
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.57 E-value=4.9e-14 Score=123.28 Aligned_cols=145 Identities=19% Similarity=0.272 Sum_probs=101.3
Q ss_pred HHHHcccC--CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------C--CCCCCc
Q 019861 167 ELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------N--FPKDSI 232 (334)
Q Consensus 167 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~--~~~~~f 232 (334)
+.+.+++. ..++.+|||+|||+|.++..++..+. +++|+|+++.+++.|++++.... . ...++|
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~f 120 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEF 120 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCc
Confidence 34444444 34578999999999999999998765 99999999999999998765321 0 112789
Q ss_pred eEEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhh--hcCccCCCCHHHHHHHHH
Q 019861 233 DAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLSEREIEDLCR 308 (334)
Q Consensus 233 D~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~t~~~l~~ll~ 308 (334)
|+|++..+++|++. ...+++++.+++++++.+.+.... ........+...+.. ...+..+++.+++.++++
T Consensus 121 D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 195 (219)
T TIGR02021 121 DIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKT-----AWLAFLKMIGELFPGSSRATSAYLHPMTDLERALG 195 (219)
T ss_pred CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc-----hHHHHHHHHHhhCcCcccccceEEecHHHHHHHHH
Confidence 99999999999864 467899999998876555442111 111111111111111 122456789999999999
Q ss_pred hCCCcEEEEe
Q 019861 309 ACGLVDFKCT 318 (334)
Q Consensus 309 ~~Gf~~v~~~ 318 (334)
++||+++...
T Consensus 196 ~~Gf~v~~~~ 205 (219)
T TIGR02021 196 ELGWKIVREG 205 (219)
T ss_pred HcCceeeeee
Confidence 9999998754
No 49
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.56 E-value=2.4e-13 Score=115.98 Aligned_cols=121 Identities=20% Similarity=0.129 Sum_probs=93.5
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceE
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDA 234 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~ 234 (334)
..+...+...++.+|||+|||+|.++..++..++..+++++|+++.+++.++++..... ....++||+
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~ 100 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADA 100 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCE
Confidence 44455666667889999999999999999988777799999999999999988654321 011357999
Q ss_pred EEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861 235 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD 314 (334)
Q Consensus 235 V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~ 314 (334)
|++....++ ...+++.+.+.|+|||++++..... -+.+++.+++++.||+.
T Consensus 101 v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~--------------------------~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 101 IFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILL--------------------------ENLHSALAHLEKCGVSE 151 (187)
T ss_pred EEECCCccC---HHHHHHHHHHhcCCCeEEEEEEecH--------------------------hhHHHHHHHHHHCCCCc
Confidence 999876543 4668999999999999998865432 13567788999999976
Q ss_pred EE
Q 019861 315 FK 316 (334)
Q Consensus 315 v~ 316 (334)
++
T Consensus 152 ~~ 153 (187)
T PRK08287 152 LD 153 (187)
T ss_pred ce
Confidence 55
No 50
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.55 E-value=6.5e-13 Score=112.78 Aligned_cols=109 Identities=23% Similarity=0.202 Sum_probs=88.3
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCccccC
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGAAIHC 243 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~vl~h 243 (334)
+.+|||+|||+|..+..++...+..+|+|+|+++.+++.++++..... +. +++||+|++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~---- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA---- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc----
Confidence 789999999999999999887667799999999999999998765432 12 56899999975
Q ss_pred CCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861 244 WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 318 (334)
Q Consensus 244 ~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~ 318 (334)
+.++..+++++++.|+|||++++..... ...++.++.+..|+.+.+.+
T Consensus 121 ~~~~~~~l~~~~~~LkpGG~lv~~~~~~---------------------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 121 VASLSDLVELCLPLLKPGGRFLALKGRD---------------------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ccCHHHHHHHHHHhcCCCeEEEEEeCCC---------------------------hHHHHHHHHHhcCceEeeeE
Confidence 4578889999999999999999875431 24467888888899866633
No 51
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.54 E-value=6.1e-14 Score=132.10 Aligned_cols=149 Identities=19% Similarity=0.173 Sum_probs=107.9
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------CC--CCCCceEEEe
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NF--PKDSIDAVHA 237 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~~--~~~~fD~V~~ 237 (334)
.+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++..... .+ .+++||+|++
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence 3455666677778999999999999999998764 3599999999999999998764321 11 1478999999
Q ss_pred CccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCC-CchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861 238 GAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD 314 (334)
Q Consensus 238 ~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~ 314 (334)
..+++|+.+ +..+++++.++|||||.+++.+...+... ....++. .++ ++ .....+.+++.+.++ .||.+
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~---~yi--fp-~g~lps~~~i~~~~~-~~~~v 307 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWIN---KYI--FP-NGCLPSVRQIAQASE-GLFVM 307 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCce---eee--cC-CCcCCCHHHHHHHHH-CCcEE
Confidence 999999964 57899999999999999999877654221 1112211 111 11 223557888888766 58988
Q ss_pred EEEeecCc
Q 019861 315 FKCTRNRG 322 (334)
Q Consensus 315 v~~~~~g~ 322 (334)
.+....+.
T Consensus 308 ~d~~~~~~ 315 (383)
T PRK11705 308 EDWHNFGA 315 (383)
T ss_pred EEEecChh
Confidence 77665543
No 52
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.54 E-value=2.3e-13 Score=121.35 Aligned_cols=125 Identities=20% Similarity=0.344 Sum_probs=99.8
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-----CCCC--CceEEEeCccccCCCCHHH
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-----FPKD--SIDAVHAGAAIHCWSSPST 249 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-----~~~~--~fD~V~~~~vl~h~~d~~~ 249 (334)
++.+|||+|||+|.++..+++.+. .+++|+|+++.+++.|+++.....- +..+ +||+|+++...+. ...
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~~---~~~ 194 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILANP---LLE 194 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHHH---HHH
Confidence 478999999999999988888775 3699999999999999988764331 2222 7999998754322 346
Q ss_pred HHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCcEEEEEEE
Q 019861 250 GVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTAT 329 (334)
Q Consensus 250 ~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~~~~~~a~ 329 (334)
++.++.++|+|||+++++..... ..+++.+.+++.||++++....+.|..++++
T Consensus 195 l~~~~~~~LkpgG~lilsgi~~~--------------------------~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~ 248 (250)
T PRK00517 195 LAPDLARLLKPGGRLILSGILEE--------------------------QADEVLEAYEEAGFTLDEVLERGEWVALVGK 248 (250)
T ss_pred HHHHHHHhcCCCcEEEEEECcHh--------------------------hHHHHHHHHHHCCCEEEEEEEeCCEEEEEEE
Confidence 78999999999999999755321 3567889999999999998888889888888
Q ss_pred cC
Q 019861 330 KP 331 (334)
Q Consensus 330 K~ 331 (334)
|+
T Consensus 249 ~~ 250 (250)
T PRK00517 249 KK 250 (250)
T ss_pred eC
Confidence 74
No 53
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.53 E-value=1.1e-13 Score=134.90 Aligned_cols=136 Identities=18% Similarity=0.241 Sum_probs=103.0
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc--------------CCCCCCCCce
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--------------ESNFPKDSID 233 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--------------~~~~~~~~fD 233 (334)
.+...+...++.+|||||||+|.++..+++.+. +++|+|+++.+++.+++.... ..++++++||
T Consensus 28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD 105 (475)
T PLN02336 28 EILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVD 105 (475)
T ss_pred HHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEE
Confidence 445556655678999999999999999998865 999999999999987653221 1245678999
Q ss_pred EEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861 234 AVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG 311 (334)
Q Consensus 234 ~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G 311 (334)
+|++..+++|+++. ..++++++++|+|||++++.+......... ........+.+...+.+++.++|
T Consensus 106 ~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~f~~~~ 174 (475)
T PLN02336 106 LIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS-----------KRKNNPTHYREPRFYTKVFKECH 174 (475)
T ss_pred EEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc-----------cccCCCCeecChHHHHHHHHHhe
Confidence 99999999999874 689999999999999999987653211000 00111233456889999999999
Q ss_pred CcEEE
Q 019861 312 LVDFK 316 (334)
Q Consensus 312 f~~v~ 316 (334)
|....
T Consensus 175 ~~~~~ 179 (475)
T PLN02336 175 TRDED 179 (475)
T ss_pred eccCC
Confidence 97664
No 54
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.53 E-value=3.8e-13 Score=113.95 Aligned_cols=126 Identities=13% Similarity=0.144 Sum_probs=98.0
Q ss_pred HHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------CCCCCCceEEEe
Q 019861 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------NFPKDSIDAVHA 237 (334)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~~~~~fD~V~~ 237 (334)
+...+...++.+|||+|||+|.++..++..++ +++|+|+++.+++.++++..... ....++||+|++
T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~ 88 (179)
T TIGR00537 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILF 88 (179)
T ss_pred HHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEE
Confidence 33444445567999999999999999999886 99999999999999998764321 123568999999
Q ss_pred CccccCCCC---------------------HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccC
Q 019861 238 GAAIHCWSS---------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT 296 (334)
Q Consensus 238 ~~vl~h~~d---------------------~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (334)
+-.+++..+ ...+++++.++|+|||.+++......
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------------------------ 144 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------------------------ 144 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC------------------------
Confidence 987766653 24579999999999999999775431
Q ss_pred CCCHHHHHHHHHhCCCcEEEEeecCc
Q 019861 297 FLSEREIEDLCRACGLVDFKCTRNRG 322 (334)
Q Consensus 297 ~~t~~~l~~ll~~~Gf~~v~~~~~g~ 322 (334)
...++.+++++.||+.......|.
T Consensus 145 --~~~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 145 --GEPDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred --ChHHHHHHHHhCCCeEEEEEEeec
Confidence 256888999999998877665553
No 55
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.52 E-value=2.9e-13 Score=119.14 Aligned_cols=137 Identities=20% Similarity=0.213 Sum_probs=95.4
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEEEeCccccC
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAVHAGAAIHC 243 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V~~~~vl~h 243 (334)
.++.+|||||||+|.++..+++.+. .|+|+|+++.+++.++++..... +..+++||+|++..+++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 4577999999999999999998876 79999999999999998765321 123578999999999999
Q ss_pred CCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhh--hhcCccCCCCHHHHHHHHHhCCCcEEEEee
Q 019861 244 WSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFLSEREIEDLCRACGLVDFKCTR 319 (334)
Q Consensus 244 ~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~ 319 (334)
++++ ..+++++.+.+++++. +...+ .. ............+. ....+...++.+++.++++++||++.+...
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~-i~~~~-~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLI-FTFAP-YT---PLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEE-EEECC-cc---HHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 8855 4678888887654443 33221 11 11111111111111 112234567899999999999999887543
No 56
>PRK04266 fibrillarin; Provisional
Probab=99.49 E-value=1.3e-12 Score=114.28 Aligned_cols=137 Identities=11% Similarity=0.087 Sum_probs=93.9
Q ss_pred ccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------CC------CCCCceEEE
Q 019861 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NF------PKDSIDAVH 236 (334)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~------~~~~fD~V~ 236 (334)
.+...++.+|||+|||+|.++..+++..+...|+|+|+++.|++.+.++..... .. -.++||+|+
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~ 146 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY 146 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE
Confidence 466677899999999999999999987544689999999999886655433211 00 024689988
Q ss_pred eCccccCCCCH---HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCc
Q 019861 237 AGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV 313 (334)
Q Consensus 237 ~~~vl~h~~d~---~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~ 313 (334)
+. +.+| ..+|+++.++|||||.+++..+-.. ...... +... .++..++++++||+
T Consensus 147 ~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~-~d~~~~--------------~~~~--~~~~~~~l~~aGF~ 204 (226)
T PRK04266 147 QD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS-IDVTKD--------------PKEI--FKEEIRKLEEGGFE 204 (226)
T ss_pred EC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccc-ccCcCC--------------HHHH--HHHHHHHHHHcCCe
Confidence 53 3444 3468999999999999999754321 000000 0011 13445999999999
Q ss_pred EEEEeecC----cEEEEEEEc
Q 019861 314 DFKCTRNR----GFVMFTATK 330 (334)
Q Consensus 314 ~v~~~~~g----~~~~~~a~K 330 (334)
+++....+ .++++++++
T Consensus 205 ~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 205 ILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred EEEEEcCCCCcCCeEEEEEEc
Confidence 99876654 357776665
No 57
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.48 E-value=8.8e-13 Score=114.41 Aligned_cols=122 Identities=21% Similarity=0.182 Sum_probs=90.2
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc---------------C------C---CCC---
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---------------E------S---NFP--- 228 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---------------~------~---~~~--- 228 (334)
.++.+|||+|||.|..+..|+++|. +|+|+|+|+.+++.+.+.... . . .++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 3567999999999999999999998 999999999999986432110 0 0 111
Q ss_pred CCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHH
Q 019861 229 KDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 306 (334)
Q Consensus 229 ~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l 306 (334)
.+.||.|+...+++|++.. ...++.+.++|+|||++++.+........ .+....++.+++.++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~---------------~gpp~~~~~~eL~~~ 175 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM---------------AGPPFSVSPAEVEAL 175 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC---------------CCcCCCCCHHHHHHH
Confidence 3579999999999999743 46899999999999998887776532110 112245799999998
Q ss_pred HHhCCCcEE
Q 019861 307 CRACGLVDF 315 (334)
Q Consensus 307 l~~~Gf~~v 315 (334)
+.. +|.+.
T Consensus 176 f~~-~~~i~ 183 (213)
T TIGR03840 176 YGG-HYEIE 183 (213)
T ss_pred hcC-CceEE
Confidence 863 44433
No 58
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.47 E-value=1.4e-12 Score=110.41 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=71.2
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------C-CCCCCceEEEeCccccC
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------N-FPKDSIDAVHAGAAIHC 243 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~-~~~~~fD~V~~~~vl~h 243 (334)
++.+|||+|||+|.++..++..++..+|+|+|+++.+++.++++..... . ..+++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~---- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA---- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh----
Confidence 3789999999999999998887776789999999999998887654321 1 1357899999976
Q ss_pred CCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 244 WSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 244 ~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
+.+...+++.+.++|+|||.+++..
T Consensus 118 ~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 3456677889999999999999753
No 59
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.46 E-value=4.5e-13 Score=111.32 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=87.8
Q ss_pred EEEeCCHHHHHHHHHHHhc-----------------CCCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEE
Q 019861 205 VALDYSENMLKQCYEFVQQ-----------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 267 (334)
Q Consensus 205 ~giD~s~~~~~~a~~~~~~-----------------~~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~ 267 (334)
+|+|+|++|++.|+++... ..++++++||+|++..+++|++|+..+|++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 4899999999999765431 11567889999999999999999999999999999999999999
Q ss_pred EeccCCCCCchHHHHHHH-------HHhhh----h----cCccCCCCHHHHHHHHHhCCCcEEEE--eecCcEEEEEEE
Q 019861 268 TYIVDGPFNLIPFSRLLR-------QNMMQ----I----SGSYTFLSEREIEDLCRACGLVDFKC--TRNRGFVMFTAT 329 (334)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~-------~~~~~----~----~~~~~~~t~~~l~~ll~~~Gf~~v~~--~~~g~~~~~~a~ 329 (334)
+................. ..... + .....+.+.+++.++|+++||+.++. ...|...++++-
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 159 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVAM 159 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEee
Confidence 887543211100000000 00000 0 11235779999999999999987774 455666666654
No 60
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.46 E-value=9.4e-13 Score=113.63 Aligned_cols=94 Identities=12% Similarity=0.149 Sum_probs=76.7
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------CCCCCCCceEEEeCccccCCC--C
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SNFPKDSIDAVHAGAAIHCWS--S 246 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------~~~~~~~fD~V~~~~vl~h~~--d 246 (334)
++.+|||||||+|.++..++...+..+++|+|+|+.+++.|+++.... .++++++||+|++..+|+|++ +
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~~ 122 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPDN 122 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHHH
Confidence 467899999999999999988755569999999999999999864321 256788999999999999996 2
Q ss_pred HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 247 PSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 247 ~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
...+++++.+++ ++.+++.+...+
T Consensus 123 ~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 123 LPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred HHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 357888888887 567777776544
No 61
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.45 E-value=3.3e-13 Score=113.18 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=92.8
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------CCCCCCceEEEeC
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------NFPKDSIDAVHAG 238 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~~~~~~fD~V~~~ 238 (334)
..+...++..+..+|.|+|||+|..+..|+++.|.+.++|+|-|++|++.|++++.... --++...|+++++
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaN 99 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFAN 99 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhhh
Confidence 35566677778899999999999999999999999999999999999999988765432 2346789999999
Q ss_pred ccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
.+|+.++|-...|..+...|.|||+|.+..|+.
T Consensus 100 AvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 100 AVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 999999999999999999999999999998875
No 62
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=3.2e-12 Score=114.48 Aligned_cols=133 Identities=21% Similarity=0.395 Sum_probs=106.5
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCC-CCC
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFP-KDS 231 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~-~~~ 231 (334)
.+.+.+++. ++.+|||+|||+|-++..+++.|. ..++|+|+++.+++.++++..... ..+ .++
T Consensus 153 L~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~ 229 (300)
T COG2264 153 LEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGP 229 (300)
T ss_pred HHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCc
Confidence 344555554 488999999999999999999985 579999999999999999866432 122 369
Q ss_pred ceEEEeCccccCCCCH-HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC
Q 019861 232 IDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 310 (334)
Q Consensus 232 fD~V~~~~vl~h~~d~-~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~ 310 (334)
||+|+++- +.++ ..+..++.+.|+|||+++++-...+ -.+.+.+.++++
T Consensus 230 ~DvIVANI----LA~vl~~La~~~~~~lkpgg~lIlSGIl~~--------------------------q~~~V~~a~~~~ 279 (300)
T COG2264 230 FDVIVANI----LAEVLVELAPDIKRLLKPGGRLILSGILED--------------------------QAESVAEAYEQA 279 (300)
T ss_pred ccEEEehh----hHHHHHHHHHHHHHHcCCCceEEEEeehHh--------------------------HHHHHHHHHHhC
Confidence 99999985 2344 3677889999999999999775421 156788999999
Q ss_pred CCcEEEEeecCcEEEEEEEcC
Q 019861 311 GLVDFKCTRNRGFVMFTATKP 331 (334)
Q Consensus 311 Gf~~v~~~~~g~~~~~~a~K~ 331 (334)
||++++....+-|..+.++|.
T Consensus 280 gf~v~~~~~~~eW~~i~~kr~ 300 (300)
T COG2264 280 GFEVVEVLEREEWVAIVGKRK 300 (300)
T ss_pred CCeEeEEEecCCEEEEEEEcC
Confidence 999999988898999998874
No 63
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.44 E-value=8.1e-13 Score=111.73 Aligned_cols=149 Identities=21% Similarity=0.215 Sum_probs=113.8
Q ss_pred HhcCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC----------
Q 019861 155 VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------- 224 (334)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------- 224 (334)
.+-+|..|+.+.++|...- ..+-.++||+|||||.++..+...-. ..+|+|+|.+|++.|.++-.-+
T Consensus 104 dkL~Y~vP~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~F 180 (287)
T COG4976 104 DKLGYSVPELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLF 180 (287)
T ss_pred HHhcCccHHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHH
Confidence 3457777777777776543 33357999999999999999988865 8999999999999998752111
Q ss_pred C-CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccC-CCCHHH
Q 019861 225 S-NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT-FLSERE 302 (334)
Q Consensus 225 ~-~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~ 302 (334)
. ...+.+||+|++..||-++.+.+.++.-+...|+|||.+.++.-....... +. . ..+.+ -.+..-
T Consensus 181 l~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~---f~-------l--~ps~RyAH~~~Y 248 (287)
T COG4976 181 LEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG---FV-------L--GPSQRYAHSESY 248 (287)
T ss_pred hhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC---ee-------c--chhhhhccchHH
Confidence 1 245688999999999999999999999999999999999998887654311 10 0 01111 235678
Q ss_pred HHHHHHhCCCcEEEEe
Q 019861 303 IEDLCRACGLVDFKCT 318 (334)
Q Consensus 303 l~~ll~~~Gf~~v~~~ 318 (334)
++.+++..||+++++.
T Consensus 249 Vr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 249 VRALLAASGLEVIAIE 264 (287)
T ss_pred HHHHHHhcCceEEEee
Confidence 9999999999998843
No 64
>PRK06922 hypothetical protein; Provisional
Probab=99.44 E-value=1.4e-12 Score=127.36 Aligned_cols=95 Identities=24% Similarity=0.375 Sum_probs=80.4
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------CC--CCCCCceEEEeCccc
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------SN--FPKDSIDAVHAGAAI 241 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------~~--~~~~~fD~V~~~~vl 241 (334)
++.+|||||||+|.++..++...+..+++|+|+|+.|++.|+++.... .+ +++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 478999999999999999988877889999999999999998764321 12 567899999999999
Q ss_pred cCCC-------------CHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 242 HCWS-------------SPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 242 ~h~~-------------d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
||+. ++..+|++++++|||||.+++.+...
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 8762 45789999999999999999987643
No 65
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.43 E-value=4.9e-12 Score=105.86 Aligned_cols=141 Identities=13% Similarity=0.157 Sum_probs=97.2
Q ss_pred ccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------CCCCCCceEEEeCcc
Q 019861 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------NFPKDSIDAVHAGAA 240 (334)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~~~~~fD~V~~~~v 240 (334)
.++...-.++||+|||.|.++..|+.... .++++|+++.+++.|++++.... ..|+++||+|+++.+
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEV 115 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehH
Confidence 45555567999999999999999999975 99999999999999999987643 356899999999999
Q ss_pred ccCCCCH---HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEE-
Q 019861 241 IHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK- 316 (334)
Q Consensus 241 l~h~~d~---~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~- 316 (334)
++++.+. ..+++.+.+.|+|||.+++...... . ... ..+.+..+.+.++|.+. |..++
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-------~-------c~~---wgh~~ga~tv~~~~~~~-~~~~~~ 177 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA-------N-------CRR---WGHAAGAETVLEMLQEH-LTEVER 177 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH-------H-------HHH---TT-S--HHHHHHHHHHH-SEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC-------c-------ccc---cCcccchHHHHHHHHHH-hhheeE
Confidence 9999864 4689999999999999999776310 0 001 12445899999999887 44444
Q ss_pred Eee-----cCcEEEEEEEcCC
Q 019861 317 CTR-----NRGFVMFTATKPS 332 (334)
Q Consensus 317 ~~~-----~g~~~~~~a~K~~ 332 (334)
..- +....+...+||.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~ 198 (201)
T PF05401_consen 178 VECRGGSPNEDCLLARFRNPV 198 (201)
T ss_dssp EEEE-SSTTSEEEEEEEE--S
T ss_pred EEEcCCCCCCceEeeeecCCc
Confidence 221 2235666666663
No 66
>PRK14967 putative methyltransferase; Provisional
Probab=99.43 E-value=3.3e-12 Score=112.00 Aligned_cols=152 Identities=17% Similarity=0.147 Sum_probs=99.0
Q ss_pred CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEEEeCcccc
Q 019861 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAVHAGAAIH 242 (334)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V~~~~vl~ 242 (334)
..++.+|||+|||+|.++..++..+ ..+++++|+++.+++.++++..... .+++++||+|+++--..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 3457899999999999999988875 3589999999999999888654321 23567899999973211
Q ss_pred CC-C--------------------CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHh---hhhcCccCCC
Q 019861 243 CW-S--------------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM---MQISGSYTFL 298 (334)
Q Consensus 243 h~-~--------------------d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 298 (334)
.- . ....+++++.++|+|||++++....... .......+...- .....+...|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~---~~~~~~~l~~~g~~~~~~~~~~~~~ 189 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG---VERTLTRLSEAGLDAEVVASQWIPF 189 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC---HHHHHHHHHHCCCCeEEEEeeccCc
Confidence 11 0 0245788999999999999987665422 122222222111 0111122234
Q ss_pred CHHH--HHHHHHhCCCcEEEEeecCcEEEEEEEcC
Q 019861 299 SERE--IEDLCRACGLVDFKCTRNRGFVMFTATKP 331 (334)
Q Consensus 299 t~~~--l~~ll~~~Gf~~v~~~~~g~~~~~~a~K~ 331 (334)
.... ...++++.||-.. -......++++++||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 223 (223)
T PRK14967 190 GPVLRARAAWLERRGLLPP-GQREEELVVIRADKP 223 (223)
T ss_pred cHHHHHHHHHHHHcCCCCC-CCceEEEEEEEeecC
Confidence 4333 4478899999754 344455678888886
No 67
>PRK14968 putative methyltransferase; Provisional
Probab=99.43 E-value=6.9e-12 Score=106.72 Aligned_cols=122 Identities=19% Similarity=0.236 Sum_probs=90.2
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCc
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSI 232 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~f 232 (334)
.+...+...++.+|||+|||+|.++..++..+ .+++|+|+++.+++.+++++.... .+.+++|
T Consensus 14 ~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 91 (188)
T PRK14968 14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKF 91 (188)
T ss_pred HHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCc
Confidence 33444444567899999999999999999885 499999999999999987654211 2334589
Q ss_pred eEEEeCccccCC-----------------CC----HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhh
Q 019861 233 DAVHAGAAIHCW-----------------SS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI 291 (334)
Q Consensus 233 D~V~~~~vl~h~-----------------~d----~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (334)
|+|+++..+.+. .+ ...+++++.++|+|||.+++..+..
T Consensus 92 d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~-------------------- 151 (188)
T PRK14968 92 DVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL-------------------- 151 (188)
T ss_pred eEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--------------------
Confidence 999987543321 11 3467999999999999988865431
Q ss_pred cCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861 292 SGSYTFLSEREIEDLCRACGLVDFKC 317 (334)
Q Consensus 292 ~~~~~~~t~~~l~~ll~~~Gf~~v~~ 317 (334)
...+++.++++++||++...
T Consensus 152 ------~~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 152 ------TGEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred ------CCHHHHHHHHHHCCCeeeee
Confidence 23567889999999987663
No 68
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.42 E-value=2.5e-12 Score=116.21 Aligned_cols=132 Identities=23% Similarity=0.378 Sum_probs=102.0
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------CCCCCCceEE
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------NFPKDSIDAV 235 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~~~~~fD~V 235 (334)
+.+.++.. ++.+|||+|||+|-++...++.|. .+|+|+|+++.+++.|+++..... ....++||+|
T Consensus 153 ~~l~~~~~--~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlv 229 (295)
T PF06325_consen 153 ELLEKYVK--PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLV 229 (295)
T ss_dssp HHHHHHSS--TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEE
T ss_pred HHHHHhcc--CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEE
Confidence 44445543 478999999999999999999985 589999999999999999866432 2345899999
Q ss_pred EeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEE
Q 019861 236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF 315 (334)
Q Consensus 236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v 315 (334)
+++-..+- ...++..+.++|+|||+++++-.... ..+++.+.+++ ||+++
T Consensus 230 vANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~--------------------------~~~~v~~a~~~-g~~~~ 279 (295)
T PF06325_consen 230 VANILADV---LLELAPDIASLLKPGGYLILSGILEE--------------------------QEDEVIEAYKQ-GFELV 279 (295)
T ss_dssp EEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG--------------------------GHHHHHHHHHT-TEEEE
T ss_pred EECCCHHH---HHHHHHHHHHhhCCCCEEEEccccHH--------------------------HHHHHHHHHHC-CCEEE
Confidence 98754321 13567788999999999999776532 35678888877 99999
Q ss_pred EEeecCcEEEEEEEcC
Q 019861 316 KCTRNRGFVMFTATKP 331 (334)
Q Consensus 316 ~~~~~g~~~~~~a~K~ 331 (334)
+....+.|..+.++|+
T Consensus 280 ~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 280 EEREEGEWVALVFKKK 295 (295)
T ss_dssp EEEEETTEEEEEEEE-
T ss_pred EEEEECCEEEEEEEeC
Confidence 9999999999998884
No 69
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.42 E-value=2.7e-12 Score=101.44 Aligned_cols=99 Identities=22% Similarity=0.148 Sum_probs=77.6
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCc
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSI 232 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~f 232 (334)
.+...+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++..... +...++|
T Consensus 10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 3444455555779999999999999999998766799999999999999987654321 1123589
Q ss_pred eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
|+|++....++ ...+++++.+.|+|||.+++...
T Consensus 90 D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 90 DRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEec
Confidence 99999876543 35889999999999999998653
No 70
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.42 E-value=9.4e-12 Score=115.41 Aligned_cols=104 Identities=20% Similarity=0.275 Sum_probs=82.8
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------CCCCCCceEE
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------NFPKDSIDAV 235 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~~~~~fD~V 235 (334)
+.+...+.....++|||+|||+|.++..+++.++..+++++|+++.+++.+++++.... ...+++||+|
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 44555555444568999999999999999998877899999999999999998765432 1125789999
Q ss_pred EeCccccCCC-----CHHHHHHHHHHcccCCcEEEEEEec
Q 019861 236 HAGAAIHCWS-----SPSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 236 ~~~~vl~h~~-----d~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
+++-.+|+.. ....+++++.++|+|||.+++....
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 9998777633 3468999999999999999986653
No 71
>PLN03075 nicotianamine synthase; Provisional
Probab=99.42 E-value=5.2e-12 Score=113.49 Aligned_cols=130 Identities=12% Similarity=0.127 Sum_probs=93.3
Q ss_pred CCCcEEEECCCcCHHHHH--HHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------C-C-CCCCceEEEeC
Q 019861 177 LGGNIIDASCGSGLFSRI--FAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------N-F-PKDSIDAVHAG 238 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~--l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~-~-~~~~fD~V~~~ 238 (334)
++.+|+|||||.|.++.. ++...+.+.++|+|+++.+++.|++.+.... . . ..+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999998844333 3445777899999999999999999874311 1 1 23689999999
Q ss_pred ccccCC--CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEE
Q 019861 239 AAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK 316 (334)
Q Consensus 239 ~vl~h~--~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~ 316 (334)
+++++ .++..+|+.+++.|+|||.+++..... . ..+ -+...++++++ ||++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G--~---r~~-------------LYp~v~~~~~~------gf~~~~ 257 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHG--A---RAF-------------LYPVVDPCDLR------GFEVLS 257 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEecccc--h---Hhh-------------cCCCCChhhCC------CeEEEE
Confidence 99998 588999999999999999999976321 1 111 22334555543 998877
Q ss_pred Eeec-C--cEEEEEEEcC
Q 019861 317 CTRN-R--GFVMFTATKP 331 (334)
Q Consensus 317 ~~~~-g--~~~~~~a~K~ 331 (334)
.... + .-.+++++|+
T Consensus 258 ~~~P~~~v~Nsvi~~r~~ 275 (296)
T PLN03075 258 VFHPTDEVINSVIIARKP 275 (296)
T ss_pred EECCCCCceeeEEEEEee
Confidence 5532 2 3456666664
No 72
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.41 E-value=2e-11 Score=105.13 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=77.2
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC----------C------CCCC
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES----------N------FPKD 230 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~----------~------~~~~ 230 (334)
.....+...++.+|||+|||+|.++..++.. ++..+++++|+++.+++.++++..... . ...+
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 4445667777899999999999999888765 445699999999999999987754321 0 1136
Q ss_pred CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
.||+|++.. ...++..+++++.++|+|||++++...
T Consensus 111 ~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 111 KFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 799999864 345778899999999999999987554
No 73
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.41 E-value=2.4e-12 Score=111.08 Aligned_cols=95 Identities=19% Similarity=0.155 Sum_probs=75.9
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------C--CCCCCceEEEeCc
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------N--FPKDSIDAVHAGA 239 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~--~~~~~fD~V~~~~ 239 (334)
++.+|||+|||+|.++..+++..+..+++|+|+++.+++.++++..... + +++++||+|++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4679999999999999999888776789999999999999987654211 1 4577899999876
Q ss_pred cccCCC--------CHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 240 AIHCWS--------SPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 240 vl~h~~--------d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
...+.. ....+|+++.++|+|||.+++.+.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 543221 13678999999999999999977653
No 74
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.41 E-value=1.4e-12 Score=111.33 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=102.1
Q ss_pred CcEEEECCCcCHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHHhcC-----------------CCCCCCCceEEEeCc
Q 019861 179 GNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQE-----------------SNFPKDSIDAVHAGA 239 (334)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~-----------------~~~~~~~fD~V~~~~ 239 (334)
.+|||||||.|....-+.+..++ ..+++.|.|+.+++..+++.... .+...+++|+|++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999998888887665 78999999999999988753321 245678999999999
Q ss_pred cccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHH-------HHhhhhcCccCCCCHHHHHHHHHhC
Q 019861 240 AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-------QNMMQISGSYTFLSEREIEDLCRAC 310 (334)
Q Consensus 240 vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~t~~~l~~ll~~~ 310 (334)
||.-++ ....++..++++|||||.+++-+...... ..++... .+..++.....+|+.+++..++..+
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dl----aqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDL----AQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchH----HHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 998775 34589999999999999999998876432 1111110 0111122234689999999999999
Q ss_pred CCcEEE
Q 019861 311 GLVDFK 316 (334)
Q Consensus 311 Gf~~v~ 316 (334)
||..++
T Consensus 229 gf~~~~ 234 (264)
T KOG2361|consen 229 GFEEVQ 234 (264)
T ss_pred ccchhc
Confidence 998776
No 75
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.40 E-value=5e-12 Score=110.07 Aligned_cols=123 Identities=20% Similarity=0.151 Sum_probs=89.6
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc---------------C------C---CC---C
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---------------E------S---NF---P 228 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---------------~------~---~~---~ 228 (334)
.++.+|||+|||.|..+..|++.|. +|+|+|+|+.+++.+...... . . .+ .
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 3567999999999999999999988 999999999999986432110 0 0 11 2
Q ss_pred CCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHH
Q 019861 229 KDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 306 (334)
Q Consensus 229 ~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l 306 (334)
.+.||+|+...+++|++.. ...++.+.++|+|||++++.+........ .+....++.+++.++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~---------------~gPp~~~~~~el~~~ 178 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL---------------AGPPFSVSDEEVEAL 178 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC---------------CCCCCCCCHHHHHHH
Confidence 3589999999999999743 47899999999999986665554421100 112246799999999
Q ss_pred HHhCCCcEEE
Q 019861 307 CRACGLVDFK 316 (334)
Q Consensus 307 l~~~Gf~~v~ 316 (334)
+.. +|++..
T Consensus 179 ~~~-~~~i~~ 187 (218)
T PRK13255 179 YAG-CFEIEL 187 (218)
T ss_pred hcC-CceEEE
Confidence 964 254443
No 76
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.40 E-value=3e-12 Score=108.18 Aligned_cols=130 Identities=19% Similarity=0.273 Sum_probs=90.3
Q ss_pred HHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEE
Q 019861 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAV 235 (334)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V 235 (334)
+.+.++..+++++||+|||.|..+.+|++.|. .|+++|.|+..++.+.+...... .+ ++.||+|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~-~~~yD~I 98 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF-PEEYDFI 98 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--TTTEEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc-cCCcCEE
Confidence 33444555678999999999999999999998 99999999999998877654322 23 4689999
Q ss_pred EeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCc
Q 019861 236 HAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV 313 (334)
Q Consensus 236 ~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~ 313 (334)
++..|++|++.+ ..+++.+...++|||++++.+.... .....+ ......+.+.++.+.+. ||+
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~-~d~p~~------------~~~~f~~~~~EL~~~y~--dW~ 163 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMET-PDYPCP------------SPFPFLLKPGELREYYA--DWE 163 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB---SSS--S------------S--S--B-TTHHHHHTT--TSE
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc-CCCCCC------------CCCCcccCHHHHHHHhC--CCe
Confidence 999999998744 4789999999999999888766432 111000 11223456678888874 787
Q ss_pred EEE
Q 019861 314 DFK 316 (334)
Q Consensus 314 ~v~ 316 (334)
+++
T Consensus 164 il~ 166 (192)
T PF03848_consen 164 ILK 166 (192)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 77
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.40 E-value=4.8e-13 Score=102.31 Aligned_cols=82 Identities=30% Similarity=0.503 Sum_probs=64.8
Q ss_pred EEEECCCcCHHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeC-ccccC
Q 019861 181 IIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAG-AAIHC 243 (334)
Q Consensus 181 vLDiGcG~G~~~~~l~~~~---~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~-~vl~h 243 (334)
|||+|||+|..+..+.+.. +..+++|+|+|+.+++.++++..... ++.+++||+|++. .+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999874 34699999999999999999875432 2336799999995 55999
Q ss_pred CCCH--HHHHHHHHHcccCCc
Q 019861 244 WSSP--STGVAEISRVLRPGG 262 (334)
Q Consensus 244 ~~d~--~~~L~~i~r~LkpgG 262 (334)
+.+. ..+++++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 8754 589999999999998
No 78
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.37 E-value=2.9e-12 Score=114.97 Aligned_cols=92 Identities=16% Similarity=0.253 Sum_probs=72.2
Q ss_pred CCCcEEEECCCcCH----HHHHHHHcCC-----CCeEEEEeCCHHHHHHHHHHHh-------------------------
Q 019861 177 LGGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQ------------------------- 222 (334)
Q Consensus 177 ~~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~giD~s~~~~~~a~~~~~------------------------- 222 (334)
++.+|+|+|||+|. ++..+++.++ ..+++|+|+|+.+++.|++..-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 4445555432 4589999999999999987420
Q ss_pred ------c----------CCCCCCCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEE
Q 019861 223 ------Q----------ESNFPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 223 ------~----------~~~~~~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~ 268 (334)
. ..++++++||+|+|.++|+|++++ ..++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0 012347889999999999999755 479999999999999999843
No 79
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.35 E-value=2.6e-11 Score=113.28 Aligned_cols=103 Identities=18% Similarity=0.194 Sum_probs=81.2
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCC
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPK 229 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~ 229 (334)
.+.+++.++...+.+|||+|||+|.++..+++.+|..+++++|.|+.+++.+++++.... .+++
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~ 296 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 296 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCC
Confidence 345667776655679999999999999999999888899999999999999998764221 1334
Q ss_pred CCceEEEeCccccC---CCC--HHHHHHHHHHcccCCcEEEEEE
Q 019861 230 DSIDAVHAGAAIHC---WSS--PSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 230 ~~fD~V~~~~vl~h---~~d--~~~~L~~i~r~LkpgG~lii~~ 268 (334)
++||+|+++--+|. +.+ ...++++++++|+|||.+++..
T Consensus 297 ~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 297 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 58999999754443 222 2478999999999999999975
No 80
>PTZ00146 fibrillarin; Provisional
Probab=99.35 E-value=7.5e-11 Score=105.64 Aligned_cols=139 Identities=12% Similarity=0.078 Sum_probs=88.4
Q ss_pred cCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHH----HHHHHHHh-----cCC--C----CCCCCceEEE
Q 019861 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENML----KQCYEFVQ-----QES--N----FPKDSIDAVH 236 (334)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~----~~a~~~~~-----~~~--~----~~~~~fD~V~ 236 (334)
+...++.+|||+|||+|.++..+++. ++...|+++|+++.+. +.++++.. .+. + ...+++|+|+
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEE
Confidence 34567889999999999999999987 3456899999998754 44432210 010 1 1235799999
Q ss_pred eCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEE
Q 019861 237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK 316 (334)
Q Consensus 237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~ 316 (334)
+... ...+...++.++.++|||||.+++........ ...+ ....|. +++ ++|+++||+.++
T Consensus 208 ~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~id-~g~~--------------pe~~f~-~ev-~~L~~~GF~~~e 268 (293)
T PTZ00146 208 ADVA--QPDQARIVALNAQYFLKNGGHFIISIKANCID-STAK--------------PEVVFA-SEV-QKLKKEGLKPKE 268 (293)
T ss_pred EeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccccc-cCCC--------------HHHHHH-HHH-HHHHHcCCceEE
Confidence 9874 22233466678999999999999953322110 0000 001122 344 889999999888
Q ss_pred EeecC----cEEEEEEEc
Q 019861 317 CTRNR----GFVMFTATK 330 (334)
Q Consensus 317 ~~~~g----~~~~~~a~K 330 (334)
..... .+.++++++
T Consensus 269 ~v~L~Py~~~h~~v~~~~ 286 (293)
T PTZ00146 269 QLTLEPFERDHAVVIGVY 286 (293)
T ss_pred EEecCCccCCcEEEEEEE
Confidence 66543 344555443
No 81
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.35 E-value=1.3e-11 Score=112.30 Aligned_cols=115 Identities=18% Similarity=0.259 Sum_probs=88.0
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCccccC
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAIHC 243 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl~h 243 (334)
++.+|||+|||+|.++..++..+ ..+++|+|+++.+++.++++..... ...+++||+|+++...++
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~ 237 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV 237 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH
Confidence 47899999999999998888776 3589999999999999998765321 223568999999765433
Q ss_pred CCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCc
Q 019861 244 WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRG 322 (334)
Q Consensus 244 ~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~ 322 (334)
...++.++.++|+|||.++++..... ..+++.+.+++. |++++....+.
T Consensus 238 ---l~~ll~~~~~~LkpgG~li~sgi~~~--------------------------~~~~v~~~~~~~-f~~~~~~~~~~ 286 (288)
T TIGR00406 238 ---IKELYPQFSRLVKPGGWLILSGILET--------------------------QAQSVCDAYEQG-FTVVEIRQREE 286 (288)
T ss_pred ---HHHHHHHHHHHcCCCcEEEEEeCcHh--------------------------HHHHHHHHHHcc-CceeeEeccCC
Confidence 35788999999999999999765421 245677777766 88877655443
No 82
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.34 E-value=1e-10 Score=97.15 Aligned_cols=138 Identities=20% Similarity=0.243 Sum_probs=105.2
Q ss_pred HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCC
Q 019861 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKD 230 (334)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~ 230 (334)
+.....+..|.+.++.+++|||||+|..+..++..++.++++++|-++++++..+++..... .+++-
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~ 100 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL 100 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC
Confidence 34456667788889999999999999999999988999999999999999999888765432 12222
Q ss_pred -CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861 231 -SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 309 (334)
Q Consensus 231 -~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~ 309 (334)
++|.|+.... .+...+|+.+...|||||++++.....+ +.....+.+++
T Consensus 101 ~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE--------------------------~~~~a~~~~~~ 150 (187)
T COG2242 101 PSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLE--------------------------TLAKALEALEQ 150 (187)
T ss_pred CCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH--------------------------HHHHHHHHHHH
Confidence 7999999887 3567789999999999999998665432 34466788889
Q ss_pred CCC-cEEEEee-----cCcEEEEEEEcC
Q 019861 310 CGL-VDFKCTR-----NRGFVMFTATKP 331 (334)
Q Consensus 310 ~Gf-~~v~~~~-----~g~~~~~~a~K~ 331 (334)
.|+ ++++... .+.+.++....|
T Consensus 151 ~g~~ei~~v~is~~~~lg~~~~~~~~nP 178 (187)
T COG2242 151 LGGREIVQVQISRGKPLGGGTMFRPVNP 178 (187)
T ss_pred cCCceEEEEEeecceeccCeeEeecCCC
Confidence 999 6666332 244555555444
No 83
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.34 E-value=1.6e-11 Score=106.19 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=76.0
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCC
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES---------------NFPKD 230 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~ 230 (334)
..+.+.+...++.+|||||||+|..+..+++.. ...+|+++|+++.+++.+++++.... ....+
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 455566666678899999999999998888763 24589999999999999998765321 12246
Q ss_pred CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
+||+|++..+++|++ .++.+.|+|||++++..
T Consensus 142 ~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 142 PFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 899999999988775 46889999999998854
No 84
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.33 E-value=4e-11 Score=106.86 Aligned_cols=126 Identities=22% Similarity=0.259 Sum_probs=92.1
Q ss_pred HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCC
Q 019861 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDS 231 (334)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~ 231 (334)
..+.+...+.. .+.+|||+|||+|.++..++...+..+++|+|+++.+++.++++..... .+++++
T Consensus 76 l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 154 (251)
T TIGR03534 76 LVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGK 154 (251)
T ss_pred HHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCc
Confidence 33444444432 3468999999999999999998777799999999999999998764321 345678
Q ss_pred ceEEEeCcc------ccCCC------C--------------HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHH
Q 019861 232 IDAVHAGAA------IHCWS------S--------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR 285 (334)
Q Consensus 232 fD~V~~~~v------l~h~~------d--------------~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~ 285 (334)
||+|+++-- ++++. + ...+++++.++|+|||.+++...
T Consensus 155 fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---------------- 218 (251)
T TIGR03534 155 FDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---------------- 218 (251)
T ss_pred eeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------
Confidence 999998421 11111 0 13578999999999999988432
Q ss_pred HHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861 286 QNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 318 (334)
Q Consensus 286 ~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~ 318 (334)
+...+++.++++++||+.++..
T Consensus 219 -----------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 219 -----------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred -----------ccHHHHHHHHHHhCCCCceEEE
Confidence 1235688999999999877643
No 85
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.33 E-value=6.4e-11 Score=100.37 Aligned_cols=153 Identities=17% Similarity=0.198 Sum_probs=112.7
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------C--
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------N-- 226 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~-- 226 (334)
.+.+.++++.. +.+|||||||+|....++++..|.....-.|+++..+...+....... +
T Consensus 15 l~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~ 93 (204)
T PF06080_consen 15 LEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWE 93 (204)
T ss_pred HHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccc
Confidence 45666666552 225999999999999999999998888889999887654444322211 1
Q ss_pred ----CCCCCceEEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCH
Q 019861 227 ----FPKDSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE 300 (334)
Q Consensus 227 ----~~~~~fD~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 300 (334)
+..++||+|++.+++|-++- -..+++.+.++|++||.|++.-|.........+.-..+..........+-+.+.
T Consensus 94 ~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~ 173 (204)
T PF06080_consen 94 LPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDI 173 (204)
T ss_pred cccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCH
Confidence 12458999999999998873 358899999999999999999887754433334344444444443446678899
Q ss_pred HHHHHHHHhCCCcEEEEee
Q 019861 301 REIEDLCRACGLVDFKCTR 319 (334)
Q Consensus 301 ~~l~~ll~~~Gf~~v~~~~ 319 (334)
+++.++.+++||+..+.+.
T Consensus 174 e~v~~lA~~~GL~l~~~~~ 192 (204)
T PF06080_consen 174 EDVEALAAAHGLELEEDID 192 (204)
T ss_pred HHHHHHHHHCCCccCcccc
Confidence 9999999999998877553
No 86
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.31 E-value=2.6e-11 Score=112.93 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=80.4
Q ss_pred HHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCc
Q 019861 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSI 232 (334)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~f 232 (334)
+...+....+..+||||||+|.++..++...|...++|+|+++.+++.+.++..... .++++++
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~ 193 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSV 193 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCce
Confidence 344444455679999999999999999999988899999999999999987754321 3678899
Q ss_pred eEEEeCccccCCCCH------HHHHHHHHHcccCCcEEEEEEecc
Q 019861 233 DAVHAGAAIHCWSSP------STGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 233 D~V~~~~vl~h~~d~------~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
|.|++.+...+...+ ..+|++++|+|+|||.+.+.+-..
T Consensus 194 D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 194 EKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred eEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 999975432221111 579999999999999999977654
No 87
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.31 E-value=1.3e-11 Score=103.55 Aligned_cols=104 Identities=24% Similarity=0.384 Sum_probs=80.2
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCce
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSID 233 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD 233 (334)
+.+.+.+...+..+|||+|||+|..+..++..++..+++++|+++.+++.+++++.... ..++++||
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD 100 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFD 100 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEE
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccccccee
Confidence 34455554446789999999999999999999987779999999999999998766432 34468999
Q ss_pred EEEeCccccCCCC-----HHHHHHHHHHcccCCcEEEEEEec
Q 019861 234 AVHAGAAIHCWSS-----PSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 234 ~V~~~~vl~h~~d-----~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
+|+++-=++.-.+ ...++++..++|+|||.+++....
T Consensus 101 ~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 101 LIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp EEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred EEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 9999865443333 357899999999999999875553
No 88
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.30 E-value=1.2e-10 Score=106.76 Aligned_cols=93 Identities=18% Similarity=0.271 Sum_probs=70.2
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCC----CceEE
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES----------------NFPKD----SIDAV 235 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~----~fD~V 235 (334)
++.+|||+|||+|..+..+.+... ..+|+|+|+|+.|++.+++++.... +++.. ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 367999999999999999988854 3589999999999999988754321 11111 23345
Q ss_pred EeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEe
Q 019861 236 HAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 236 ~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
++...+.|++. ...+|++++++|+|||.+++...
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 55567888763 35789999999999999997554
No 89
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.28 E-value=6.1e-11 Score=105.26 Aligned_cols=136 Identities=20% Similarity=0.260 Sum_probs=97.5
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc--------CCCCCCCCceEEEeCc
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--------ESNFPKDSIDAVHAGA 239 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~~~~~~fD~V~~~~ 239 (334)
.+.......+..+|||||+|.|.++..+++++|..+++.+|. +..++.+++ ... ..++|. +|+|++.+
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f~~~P~--~D~~~l~~ 166 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFFDPLPV--ADVYLLRH 166 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-TTTEEEEES-TTTCCSS--ESEEEEES
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-ccccccccccHHhhhcc--ccceeeeh
Confidence 344444555567999999999999999999999999999998 888888887 111 024455 99999999
Q ss_pred cccCCCCHH--HHHHHHHHcccCC--cEEEEEEeccCCCCCchHHH---HHHHHHhhhhcCccCCCCHHHHHHHHH
Q 019861 240 AIHCWSSPS--TGVAEISRVLRPG--GVFVGTTYIVDGPFNLIPFS---RLLRQNMMQISGSYTFLSEREIEDLCR 308 (334)
Q Consensus 240 vl~h~~d~~--~~L~~i~r~Lkpg--G~lii~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~t~~~l~~ll~ 308 (334)
+||+++|.. .+|+++++.|+|| |+|+|.+...+......... ..+.-.+....+ ...+|.++|++||+
T Consensus 167 vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~-G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 167 VLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTG-GKERTEEEWEALLK 241 (241)
T ss_dssp SGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHS-SS-EEHHHHHHHHH
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcC-CCCcCHHHHHHHhC
Confidence 999999764 7899999999999 99999999876543333322 122222222222 56679999999874
No 90
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=4.6e-11 Score=103.87 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=76.2
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCC
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKD 230 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~ 230 (334)
...+.+.+...++.+|||||||+|.++..+++. +...+|+++|+++.+++.+++++.... ..+.+
T Consensus 65 ~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 65 VAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 345556666777899999999999999888876 344699999999999999998865321 12457
Q ss_pred CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
.||+|++...+++++ ..+.+.|+|||++++..
T Consensus 145 ~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence 899999988776653 45777899999988854
No 91
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.28 E-value=8.3e-11 Score=101.94 Aligned_cols=95 Identities=19% Similarity=0.158 Sum_probs=68.2
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHH-HhcC-----------CCCCCCCceEEEeCcccc
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEF-VQQE-----------SNFPKDSIDAVHAGAAIH 242 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~-~~~~-----------~~~~~~~fD~V~~~~vl~ 242 (334)
.++.+|||+|||+|.++..+++.. +...|+|+|+++. .....-. +..+ .++.+++||+|++..+.+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~ 128 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPN 128 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCc
Confidence 457899999999999999888874 4469999999871 1000000 0000 024567899999988776
Q ss_pred CCCCH-----------HHHHHHHHHcccCCcEEEEEEecc
Q 019861 243 CWSSP-----------STGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 243 h~~d~-----------~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
+..++ ..+|+++.++|+|||.+++.++..
T Consensus 129 ~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 129 MSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 65543 358999999999999999977654
No 92
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.27 E-value=3.6e-11 Score=103.14 Aligned_cols=94 Identities=18% Similarity=0.160 Sum_probs=74.7
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCceEEEeCcc
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKDSIDAVHAGAA 240 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD~V~~~~v 240 (334)
..+|||||||+|.++..++...+..+++|+|+++.+++.|+++..... .++++++|.|++...
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 569999999999999999999888899999999999999987654321 134568999988754
Q ss_pred ccCCCCH--------HHHHHHHHHcccCCcEEEEEEecc
Q 019861 241 IHCWSSP--------STGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 241 l~h~~d~--------~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
..+.... ..+++++.++|||||.+++.+...
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 3322211 468999999999999999987654
No 93
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.27 E-value=2.4e-11 Score=102.39 Aligned_cols=92 Identities=27% Similarity=0.390 Sum_probs=75.4
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH-HhcC---------CCCCCCCceEEEeCccccCCC-
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF-VQQE---------SNFPKDSIDAVHAGAAIHCWS- 245 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~-~~~~---------~~~~~~~fD~V~~~~vl~h~~- 245 (334)
.+.-|||||||+|..+..+.+.|. .++|+|+|+.|++.|.+. ++.+ .||+.++||.+|+..++.++-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence 467899999999999999999987 999999999999999953 3322 379999999999977665542
Q ss_pred ------CHH----HHHHHHHHcccCCcEEEEEEec
Q 019861 246 ------SPS----TGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 246 ------d~~----~~L~~i~r~LkpgG~lii~~~~ 270 (334)
+|. .++..++.+|++|++.++...-
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 343 5788899999999999986543
No 94
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.27 E-value=1.2e-10 Score=100.05 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=76.3
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------CC----C--CC
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NF----P--KD 230 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~----~--~~ 230 (334)
...+...+...++.+|||+|||+|.++..++...+..+++++|+++.+++.+++++.... .. + ..
T Consensus 29 ~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 29 RLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAP 108 (196)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCC
Confidence 345666777667889999999999999999877666799999999999999998764321 00 0 12
Q ss_pred CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861 231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
.+|.|+... ..+...+++++.++|+|||++++..++
T Consensus 109 ~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 109 APDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 346655432 235578999999999999999998765
No 95
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.26 E-value=3.5e-10 Score=102.67 Aligned_cols=117 Identities=19% Similarity=0.141 Sum_probs=86.4
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeC---
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAG--- 238 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~--- 238 (334)
.++.+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++..... .+++++||+|+++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 34578999999999999999998777799999999999999998765321 2345689999986
Q ss_pred ---ccccCC-----CCH--------------HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccC
Q 019861 239 ---AAIHCW-----SSP--------------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT 296 (334)
Q Consensus 239 ---~vl~h~-----~d~--------------~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (334)
..+.++ .+| ..+++++.++|+|||++++....
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-------------------------- 253 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-------------------------- 253 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--------------------------
Confidence 111111 122 45688899999999999885542
Q ss_pred CCCHHHHHHHHHhCCCcEEEEeec
Q 019861 297 FLSEREIEDLCRACGLVDFKCTRN 320 (334)
Q Consensus 297 ~~t~~~l~~ll~~~Gf~~v~~~~~ 320 (334)
+.+.+.+++...||.-......
T Consensus 254 --~~~~v~~~~~~~~~~~~~~~~~ 275 (284)
T TIGR03533 254 --SMEALEEAYPDVPFTWLEFENG 275 (284)
T ss_pred --CHHHHHHHHHhCCCceeeecCC
Confidence 2346788888888866554433
No 96
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.26 E-value=2.5e-10 Score=103.22 Aligned_cols=127 Identities=20% Similarity=0.185 Sum_probs=91.6
Q ss_pred HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh-cCC------------CCCCC
Q 019861 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-QES------------NFPKD 230 (334)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-~~~------------~~~~~ 230 (334)
.+.+.+.......++.+|||+|||+|.++..++...+..+++|+|+++.+++.++++.. ... +++++
T Consensus 95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~ 174 (275)
T PRK09328 95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGG 174 (275)
T ss_pred HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCC
Confidence 34444444444456789999999999999999998877799999999999999998865 110 22346
Q ss_pred CceEEEeCcc------cc--------CC------------CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHH
Q 019861 231 SIDAVHAGAA------IH--------CW------------SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL 284 (334)
Q Consensus 231 ~fD~V~~~~v------l~--------h~------------~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~ 284 (334)
+||+|+++-- ++ |- .....+++++.++|+|||++++....
T Consensus 175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-------------- 240 (275)
T PRK09328 175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-------------- 240 (275)
T ss_pred ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc--------------
Confidence 8999998521 11 11 11246788888999999999984311
Q ss_pred HHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861 285 RQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 317 (334)
Q Consensus 285 ~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~ 317 (334)
...+.+.+++++.||..++.
T Consensus 241 -------------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 241 -------------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred -------------hHHHHHHHHHHhCCCceeEE
Confidence 12456889999999987664
No 97
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.25 E-value=3.3e-10 Score=103.00 Aligned_cols=112 Identities=19% Similarity=0.200 Sum_probs=84.5
Q ss_pred CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeC------
Q 019861 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAG------ 238 (334)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~------ 238 (334)
.+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++..... ++++++||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 68999999999999999998777799999999999999998765321 2334489999986
Q ss_pred -------ccccCCC------------CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCC
Q 019861 239 -------AAIHCWS------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLS 299 (334)
Q Consensus 239 -------~vl~h~~------------d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 299 (334)
.++.|-+ ....+++++.++|+|||++++..... .
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~---------------------------q 248 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW---------------------------Q 248 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc---------------------------H
Confidence 2333332 23467889999999999998866532 2
Q ss_pred HHHHHHHHH-hCCCcEEEE
Q 019861 300 EREIEDLCR-ACGLVDFKC 317 (334)
Q Consensus 300 ~~~l~~ll~-~~Gf~~v~~ 317 (334)
.+.+.+++. ..||..++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 249 QKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHHHHhcCCCceeEE
Confidence 446777777 468876554
No 98
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.24 E-value=9.6e-11 Score=102.17 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=75.4
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCC
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES--------------NFPKDS 231 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~ 231 (334)
..+.+.+...++.+|||||||+|.++..+++... ..+|+++|+++.+++.|++++.... .....+
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 146 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAP 146 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCC
Confidence 4555666677789999999999999999988743 3569999999999999998865431 112458
Q ss_pred ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
||+|++.....++ ...+.+.|+|||++++..
T Consensus 147 fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 147 YDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 9999998776655 356788999999998854
No 99
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.23 E-value=1.8e-10 Score=106.88 Aligned_cols=121 Identities=19% Similarity=0.190 Sum_probs=89.1
Q ss_pred HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCC
Q 019861 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKD 230 (334)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~ 230 (334)
+...+.......++.+|||+|||+|.++..++..+. .++|+|+++.|++.++.++...+ +++++
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccC
Confidence 344444555556688999999999999888777654 99999999999999988764321 33467
Q ss_pred CceEEEeCcc------cc-C-CCC-HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHH
Q 019861 231 SIDAVHAGAA------IH-C-WSS-PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER 301 (334)
Q Consensus 231 ~fD~V~~~~v------l~-h-~~d-~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 301 (334)
+||+|++.-- .. + ..+ ...+|+++.++|+|||++++..+.. .
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~-----------------------------~ 298 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR-----------------------------I 298 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC-----------------------------C
Confidence 8999999521 11 1 111 3689999999999999999877653 1
Q ss_pred HHHHHHHhCCCcEEEE
Q 019861 302 EIEDLCRACGLVDFKC 317 (334)
Q Consensus 302 ~l~~ll~~~Gf~~v~~ 317 (334)
++.++++++|| ++..
T Consensus 299 ~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 299 DLESLAEDAFR-VVKR 313 (329)
T ss_pred CHHHHHhhcCc-chhe
Confidence 45577889999 7663
No 100
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.22 E-value=1.5e-10 Score=94.78 Aligned_cols=113 Identities=20% Similarity=0.360 Sum_probs=89.0
Q ss_pred CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCccccC
Q 019861 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGAAIHC 243 (334)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~vl~h 243 (334)
.+|||+|||.|.++..|++.+.....+|+|+|+.+++.|+...+... .+..+.||+|+--..+.-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 49999999999999999999877779999999999999887655332 233567888876554433
Q ss_pred CC--------CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEE
Q 019861 244 WS--------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF 315 (334)
Q Consensus 244 ~~--------d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v 315 (334)
+. .+...+..+.+.|+|||+++|..-| ||.+++.+.++..||+..
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN---------------------------~T~dELv~~f~~~~f~~~ 201 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN---------------------------FTKDELVEEFENFNFEYL 201 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecC---------------------------ccHHHHHHHHhcCCeEEE
Confidence 32 1245688899999999999996554 488899999999999887
Q ss_pred EEe
Q 019861 316 KCT 318 (334)
Q Consensus 316 ~~~ 318 (334)
..+
T Consensus 202 ~tv 204 (227)
T KOG1271|consen 202 STV 204 (227)
T ss_pred Eee
Confidence 744
No 101
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.22 E-value=1.3e-10 Score=99.47 Aligned_cols=89 Identities=27% Similarity=0.275 Sum_probs=70.8
Q ss_pred CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------CCCC--CCCceEEEeCccccC
Q 019861 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------SNFP--KDSIDAVHAGAAIHC 243 (334)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------~~~~--~~~fD~V~~~~vl~h 243 (334)
..++|+|||+|..++.++.... +|+|+|+|+.|++.+++..... .++. +++.|+|++...+|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 3899999999988888888765 9999999999999998754321 1222 789999999999887
Q ss_pred CCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861 244 WSSPSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 244 ~~d~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
+ |.+.+.++++|+||++|-++.....
T Consensus 113 F-dle~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 113 F-DLERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred h-chHHHHHHHHHHcCCCCCEEEEEEc
Confidence 6 6678899999999987744443333
No 102
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=7.6e-10 Score=98.78 Aligned_cols=103 Identities=20% Similarity=0.356 Sum_probs=84.8
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCc
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSI 232 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~f 232 (334)
.+.+++.++...+.+|||+|||.|.++..+++..|..+++-+|.|..+++.+++++.... +. .++|
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-~~kf 225 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-EGKF 225 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-cccc
Confidence 457777787776779999999999999999999999999999999999999999877542 12 2489
Q ss_pred eEEEeCccccCCCCH-----HHHHHHHHHcccCCcEEEEEEe
Q 019861 233 DAVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 233 D~V~~~~vl~h~~d~-----~~~L~~i~r~LkpgG~lii~~~ 269 (334)
|+|+++==+|-=.+. .+++++..+.|++||.|.+...
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999998655532222 3789999999999999998766
No 103
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.21 E-value=1.4e-10 Score=90.87 Aligned_cols=92 Identities=24% Similarity=0.367 Sum_probs=73.6
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCceEEEeCcc
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKDSIDAVHAGAA 240 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD~V~~~~v 240 (334)
|.+|||+|||+|.++..+.+.+ ..+++|+|+++..++.++.++.... .+++++||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999999999998 5699999999999999998766432 367899999999754
Q ss_pred ccCCC--------CHHHHHHHHHHcccCCcEEEEEEec
Q 019861 241 IHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 241 l~h~~--------d~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
..... ....+++++.++|+|||.+++..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 43211 1257899999999999999998764
No 104
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.20 E-value=1.3e-10 Score=98.09 Aligned_cols=160 Identities=19% Similarity=0.227 Sum_probs=96.9
Q ss_pred chhHHHHHHhHHHhhHhcCCCCcHHHHHHHHcccCCCC-CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 019861 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY 218 (334)
Q Consensus 140 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~ 218 (334)
+-+-..|+.++++.... | |..-.+.+.+++...+ ...|.|+|||.+.++..+... . .|.-+|+-+..-....
T Consensus 38 P~~F~~YH~Gfr~Qv~~---W-P~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~--~V~SfDLva~n~~Vta 110 (219)
T PF05148_consen 38 PELFDIYHEGFRQQVKK---W-PVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-H--KVHSFDLVAPNPRVTA 110 (219)
T ss_dssp HHHHHHHHHHHHHHHCT---S-SS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-SSTTEEE
T ss_pred HHHHHHHHHHHHHHHhc---C-CCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-c--eEEEeeccCCCCCEEE
Confidence 33445677777755432 1 2333456666665444 468999999999998776532 2 6888887543110000
Q ss_pred HHHhcCCCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCC
Q 019861 219 EFVQQESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFL 298 (334)
Q Consensus 219 ~~~~~~~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (334)
-. -...|+++++.|+++++-+|.- .|...+|.|..|+|||||.|.|.+... ++-
T Consensus 111 cd-ia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S------------------------Rf~ 164 (219)
T PF05148_consen 111 CD-IANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS------------------------RFE 164 (219)
T ss_dssp S--TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG------------------------G-S
T ss_pred ec-CccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc------------------------cCc
Confidence 00 1334788999999999988775 488899999999999999999988753 233
Q ss_pred CHHHHHHHHHhCCCcEEEE-eecCcEEEEEEEcCC
Q 019861 299 SEREIEDLCRACGLVDFKC-TRNRGFVMFTATKPS 332 (334)
Q Consensus 299 t~~~l~~ll~~~Gf~~v~~-~~~g~~~~~~a~K~~ 332 (334)
+.+.+.+.++..||+.... ..+..|.++..+|..
T Consensus 165 ~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 165 NVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp -HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred CHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence 6788999999999998874 456678888888754
No 105
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.19 E-value=2.7e-10 Score=99.09 Aligned_cols=96 Identities=17% Similarity=0.210 Sum_probs=76.1
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CC-CCCC
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NF-PKDS 231 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~-~~~~ 231 (334)
...+...+...++.+|||+|||+|.++..++.... +++++|+++.+++.+++++.... .+ +.++
T Consensus 67 ~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 67 VARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 34555666777789999999999999988887754 89999999999999998765321 11 2378
Q ss_pred ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
||+|++...++++ .+.+.+.|+|||++++...
T Consensus 145 fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 145 FDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 9999998877665 3567889999999998765
No 106
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.18 E-value=1.1e-09 Score=100.48 Aligned_cols=125 Identities=19% Similarity=0.134 Sum_probs=88.7
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCc----
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGA---- 239 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~---- 239 (334)
..+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++..... .+++++||+|+++-
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 368999999999999999998777899999999999999998865321 23456899999861
Q ss_pred --c-------ccCCCC------------HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCC
Q 019861 240 --A-------IHCWSS------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFL 298 (334)
Q Consensus 240 --v-------l~h~~d------------~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (334)
. ++|-+. ...+++++.++|+|||.+++....
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~---------------------------- 265 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN---------------------------- 265 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc----------------------------
Confidence 1 122221 146789999999999999985432
Q ss_pred CHHHHHHHHHhCCCcEEEEeecCcEEEEEEEcC
Q 019861 299 SEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 331 (334)
Q Consensus 299 t~~~l~~ll~~~Gf~~v~~~~~g~~~~~~a~K~ 331 (334)
+.+.+.+++...||.-...... ...++.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 297 (307)
T PRK11805 266 SRVHLEEAYPDVPFTWLEFENG-GDGVFLLTRE 297 (307)
T ss_pred CHHHHHHHHhhCCCEEEEecCC-CceEEEEEHH
Confidence 1235667777778765544433 3445555443
No 107
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=3.5e-10 Score=98.07 Aligned_cols=103 Identities=24% Similarity=0.365 Sum_probs=87.8
Q ss_pred HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCC
Q 019861 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES--------------NFP 228 (334)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~ 228 (334)
+-..+|..+++..++.+|||.|.|+|.++..|+.. ++.++++.+|+.++..+.|++++.... ...
T Consensus 81 KD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 81 KDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID 160 (256)
T ss_pred CCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence 33457888888999999999999999999999964 777899999999999999999987532 122
Q ss_pred CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 229 KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 229 ~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
.+.||+|+.. +++|..+|..++++|+|||.+++..|+.
T Consensus 161 ~~~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 161 EEDVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred ccccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 3489998875 6999999999999999999999988875
No 108
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.17 E-value=2.2e-10 Score=99.87 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=76.8
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----CCCCCCCCceEEEeCccccCCCCHHHHH
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----ESNFPKDSIDAVHAGAAIHCWSSPSTGV 251 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----~~~~~~~~fD~V~~~~vl~h~~d~~~~L 251 (334)
...++||||+|.|..+..++.... +|++.|.|+.|....+++--. +..-.+.+||+|.|.++|..-.+|..+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL 171 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLL 171 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHH
Confidence 456899999999999999998866 999999999998777653100 0111246899999999999999999999
Q ss_pred HHHHHcccCCcEEEEEEecc
Q 019861 252 AEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 252 ~~i~r~LkpgG~lii~~~~~ 271 (334)
++|++.|+|+|++++.....
T Consensus 172 ~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 172 RDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred HHHHHHhCCCCEEEEEEEec
Confidence 99999999999998866543
No 109
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.17 E-value=2.1e-10 Score=97.74 Aligned_cols=130 Identities=17% Similarity=0.223 Sum_probs=93.0
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCcccc
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGAAIH 242 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~vl~ 242 (334)
...+.||.|+|.|..+..+.-.. +.+|..+|+.+..++.|++.+.... ..+.++||+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 35699999999999998775544 4599999999999999998766521 12247999999999999
Q ss_pred CCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861 243 CWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 318 (334)
Q Consensus 243 h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~ 318 (334)
|+.|. ..+|++++..|+|+|.+++-+........ .+.. ....-..+.+.++++++++|+++++..
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~----------~~D~-~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD----------EFDE-EDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE----------EEET-TTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc----------ccCC-ccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 99966 58999999999999999998887643210 0001 112223478999999999999998843
No 110
>PHA03411 putative methyltransferase; Provisional
Probab=99.17 E-value=8.9e-10 Score=97.75 Aligned_cols=136 Identities=14% Similarity=0.165 Sum_probs=94.6
Q ss_pred cCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------CCC
Q 019861 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------NFP 228 (334)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~~~ 228 (334)
+.|..|......+. +......+|||+|||+|.++..++...+..+++|+|+++.+++.+++++.... ...
T Consensus 46 G~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~ 123 (279)
T PHA03411 46 GAFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES 123 (279)
T ss_pred eeEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc
Confidence 44555665553332 22334579999999999998888776444699999999999999998643211 123
Q ss_pred CCCceEEEeCccccCCCC--------------------HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHh
Q 019861 229 KDSIDAVHAGAAIHCWSS--------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM 288 (334)
Q Consensus 229 ~~~fD~V~~~~vl~h~~d--------------------~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~ 288 (334)
+++||+|+++--+.|... ...+++....+|+|+|.+++..-.. +. +
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~-------~~-------y 189 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR-------PY-------Y 189 (279)
T ss_pred cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc-------cc-------c
Confidence 568999999877776532 1356777888999999777652221 11 0
Q ss_pred hhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861 289 MQISGSYTFLSEREIEDLCRACGLVD 314 (334)
Q Consensus 289 ~~~~~~~~~~t~~~l~~ll~~~Gf~~ 314 (334)
| .-++.++.+++|+++||..
T Consensus 190 -----~-~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 190 -----D-GTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred -----c-ccCCHHHHHHHHHhcCcEe
Confidence 1 2358999999999999954
No 111
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.15 E-value=2e-09 Score=101.08 Aligned_cols=139 Identities=14% Similarity=0.081 Sum_probs=94.4
Q ss_pred HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CC-CC
Q 019861 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NF-PK 229 (334)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~-~~ 229 (334)
.+.+.+...+. ++.+|||+|||+|.++..++...+..+++|+|+|+.+++.++++..... .+ .+
T Consensus 240 ~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~ 317 (423)
T PRK14966 240 HLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSE 317 (423)
T ss_pred HHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccC
Confidence 34444444443 3569999999999999999887767799999999999999998865321 11 23
Q ss_pred CCceEEEeCcc---------c----cC--------CCC----HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHH
Q 019861 230 DSIDAVHAGAA---------I----HC--------WSS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL 284 (334)
Q Consensus 230 ~~fD~V~~~~v---------l----~h--------~~d----~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~ 284 (334)
++||+|+++-- + .| -.| ...+++.+.+.|+|||.+++....
T Consensus 318 ~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-------------- 383 (423)
T PRK14966 318 GKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-------------- 383 (423)
T ss_pred CCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc--------------
Confidence 57999999521 0 00 001 125666777899999998874432
Q ss_pred HHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe--ecCcEEEEEEEcC
Q 019861 285 RQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATKP 331 (334)
Q Consensus 285 ~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~--~~g~~~~~~a~K~ 331 (334)
-..+.+.+++++.||..++.. ..|.--++.+++.
T Consensus 384 -------------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~~ 419 (423)
T PRK14966 384 -------------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYM 419 (423)
T ss_pred -------------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEEh
Confidence 135688999999999876643 3344444445543
No 112
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.14 E-value=2.1e-09 Score=94.05 Aligned_cols=124 Identities=16% Similarity=0.194 Sum_probs=94.4
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCC
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKD 230 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~ 230 (334)
++..+......++|||+|||+|..+..++++...++++|+|+.+.+.+.|+++++... .....
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~ 114 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA 114 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc
Confidence 4445555556789999999999999999999666899999999999999999876532 23345
Q ss_pred CceEEEeCc------cc----------cCC--CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhc
Q 019861 231 SIDAVHAGA------AI----------HCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQIS 292 (334)
Q Consensus 231 ~fD~V~~~~------vl----------~h~--~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (334)
+||+|+|+= .- +|. .+.+..++...++|||||.+.+.-+..
T Consensus 115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e--------------------- 173 (248)
T COG4123 115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE--------------------- 173 (248)
T ss_pred ccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---------------------
Confidence 799999961 11 111 134678999999999999999866532
Q ss_pred CccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861 293 GSYTFLSEREIEDLCRACGLVDFKCT 318 (334)
Q Consensus 293 ~~~~~~t~~~l~~ll~~~Gf~~v~~~ 318 (334)
...+|.+++++.+|...+..
T Consensus 174 ------rl~ei~~~l~~~~~~~k~i~ 193 (248)
T COG4123 174 ------RLAEIIELLKSYNLEPKRIQ 193 (248)
T ss_pred ------HHHHHHHHHHhcCCCceEEE
Confidence 34588899999999776643
No 113
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.13 E-value=5.7e-10 Score=97.04 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=90.2
Q ss_pred cCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc--C----C---------------C-CC--
Q 019861 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--E----S---------------N-FP-- 228 (334)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--~----~---------------~-~~-- 228 (334)
+...++.+||..|||.|.-+..|++.|. +|+|+|+|+.+++.+.+.... . . . |.
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~ 110 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP 110 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC
Confidence 5556678999999999999999999997 999999999999998543221 0 0 1 11
Q ss_pred ---CCCceEEEeCccccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHH
Q 019861 229 ---KDSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI 303 (334)
Q Consensus 229 ---~~~fD~V~~~~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l 303 (334)
.++||+|+-...|.-++ ......+.+.++|+|||.+++.+...+.... .+.....+.+++
T Consensus 111 ~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~---------------~GPPf~v~~~ev 175 (218)
T PF05724_consen 111 PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM---------------EGPPFSVTEEEV 175 (218)
T ss_dssp GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS---------------SSSS----HHHH
T ss_pred hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC---------------CCcCCCCCHHHH
Confidence 24799999999888776 3357899999999999996666655432111 122334688999
Q ss_pred HHHHHhCCCcEEEE
Q 019861 304 EDLCRACGLVDFKC 317 (334)
Q Consensus 304 ~~ll~~~Gf~~v~~ 317 (334)
.+++. .+|++...
T Consensus 176 ~~l~~-~~f~i~~l 188 (218)
T PF05724_consen 176 RELFG-PGFEIEEL 188 (218)
T ss_dssp HHHHT-TTEEEEEE
T ss_pred HHHhc-CCcEEEEE
Confidence 99998 88877653
No 114
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.12 E-value=1.6e-09 Score=94.16 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=87.9
Q ss_pred CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh---------------cCC---------CCC-
Q 019861 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ---------------QES---------NFP- 228 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~---------------~~~---------~~~- 228 (334)
...++.+||+.|||.|..+.+|+..|. +|+|+|+|+..++.+.+... ... .++
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 333568999999999999999999998 89999999999999865311 000 111
Q ss_pred ----CCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHH
Q 019861 229 ----KDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE 302 (334)
Q Consensus 229 ----~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 302 (334)
.+.||+|+-...|.+++.. ....+.+.++|+|||.+++.+...+.... +.....+.++
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~----------------GPPf~v~~~e 181 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQ----------------TPPYSVTQAE 181 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCC----------------CCCCcCCHHH
Confidence 2579999999999999743 47899999999999999988875432111 1122356778
Q ss_pred HHHHHHh
Q 019861 303 IEDLCRA 309 (334)
Q Consensus 303 l~~ll~~ 309 (334)
+++++..
T Consensus 182 ~~~lf~~ 188 (226)
T PRK13256 182 LIKNFSA 188 (226)
T ss_pred HHHhccC
Confidence 8777754
No 115
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=7.3e-10 Score=94.07 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=82.2
Q ss_pred HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-------------C-CCC
Q 019861 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-------------F-PKD 230 (334)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-------------~-~~~ 230 (334)
....+.+.+...++.+|||||||+|+.+..|++... +|+.+|..+...+.|++++...+- . +..
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 345677788888999999999999999999999875 999999999999999998775431 2 347
Q ss_pred CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
+||.|+.......+|++ +.+.|++||++++-.-
T Consensus 138 PyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence 99999999998887655 6778999999999665
No 116
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.10 E-value=4.4e-10 Score=103.52 Aligned_cols=95 Identities=28% Similarity=0.425 Sum_probs=71.7
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc--------CC--------------------CCC
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--------ES--------------------NFP 228 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--------~~--------------------~~~ 228 (334)
++.+|||+|||-|.-+.-+...+ -..++|+|++...++.|++++.. .. .++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 57899999999988777777765 35999999999999999998821 00 123
Q ss_pred C--CCceEEEeCccccCCCCH----HHHHHHHHHcccCCcEEEEEEeccC
Q 019861 229 K--DSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 229 ~--~~fD~V~~~~vl~h~~d~----~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
+ ..||+|.|.+.||+.=.. ..+|+.+.+.|+|||+++.++|+.+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 3 499999999999987433 3689999999999999999999863
No 117
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.10 E-value=4.2e-09 Score=93.84 Aligned_cols=117 Identities=19% Similarity=0.176 Sum_probs=84.0
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------CCC---CCCceEEEeCc-----
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------NFP---KDSIDAVHAGA----- 239 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~~~---~~~fD~V~~~~----- 239 (334)
+.+|||+|||+|.++..++...+..+++|+|+|+.+++.++++..... .++ .++||+|+++-
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 458999999999999999887666689999999999999998865321 111 25799999862
Q ss_pred -ccc--------CCC--------C----HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCC
Q 019861 240 -AIH--------CWS--------S----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFL 298 (334)
Q Consensus 240 -vl~--------h~~--------d----~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (334)
.+. |.+ | ...+++.+.++|+|||++++.....
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~--------------------------- 219 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER--------------------------- 219 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---------------------------
Confidence 111 110 1 1367777889999999999865421
Q ss_pred CHHHHHHHHHhCCCcEEEEeecC
Q 019861 299 SEREIEDLCRACGLVDFKCTRNR 321 (334)
Q Consensus 299 t~~~l~~ll~~~Gf~~v~~~~~g 321 (334)
..+++..++++.||+..-.....
T Consensus 220 ~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 220 QAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred hHHHHHHHHHHCCCCceeeEccc
Confidence 24578888999999654443333
No 118
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.10 E-value=1.3e-09 Score=95.95 Aligned_cols=127 Identities=19% Similarity=0.327 Sum_probs=95.9
Q ss_pred CCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC-------------
Q 019861 160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES------------- 225 (334)
Q Consensus 160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~------------- 225 (334)
....+-...|..++...||.+|||.|.|+|.++..|+.. ++.++|+.+|+.+...+.|++++....
T Consensus 23 IiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 23 IIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp ---HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred eeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 334455668888899999999999999999999999975 778899999999999999999887543
Q ss_pred --CCC---CCCceEEEeCccccCCCCHHHHHHHHHHcc-cCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCC
Q 019861 226 --NFP---KDSIDAVHAGAAIHCWSSPSTGVAEISRVL-RPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLS 299 (334)
Q Consensus 226 --~~~---~~~fD~V~~~~vl~h~~d~~~~L~~i~r~L-kpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 299 (334)
.|+ +..+|+|+.. +++|..++..+.++| ++||++.+-.|+.+ -
T Consensus 103 ~~g~~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--------------------------Q 151 (247)
T PF08704_consen 103 EEGFDEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCIE--------------------------Q 151 (247)
T ss_dssp CG--STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSHH--------------------------H
T ss_pred cccccccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCHH--------------------------H
Confidence 132 2568888765 689999999999999 89999999888742 1
Q ss_pred HHHHHHHHHhCCCcEEEE
Q 019861 300 EREIEDLCRACGLVDFKC 317 (334)
Q Consensus 300 ~~~l~~ll~~~Gf~~v~~ 317 (334)
.....+.|++.||..++.
T Consensus 152 v~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 152 VQKTVEALREHGFTDIET 169 (247)
T ss_dssp HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHCCCeeeEE
Confidence 234566778889977763
No 119
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.09 E-value=1.9e-09 Score=105.21 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=83.7
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCc----
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGA---- 239 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~---- 239 (334)
+.+|||+|||+|.++..++...+..+++++|+|+.+++.|+++..... .+++++||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 468999999999999999887667799999999999999998765321 13346899999841
Q ss_pred ----------cccCCC--------C----HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCC
Q 019861 240 ----------AIHCWS--------S----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF 297 (334)
Q Consensus 240 ----------vl~h~~--------d----~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (334)
++.|-+ | ...+++++.++|+|||.+++....
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~--------------------------- 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF--------------------------- 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC---------------------------
Confidence 222221 1 134677888999999999875321
Q ss_pred CCHHHHHHHHHhCCCcEEEE
Q 019861 298 LSEREIEDLCRACGLVDFKC 317 (334)
Q Consensus 298 ~t~~~l~~ll~~~Gf~~v~~ 317 (334)
-..+.+.+++++.||..++.
T Consensus 272 ~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 272 KQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred chHHHHHHHHHhcCCCceEE
Confidence 13567888899999976653
No 120
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.06 E-value=5.3e-10 Score=96.46 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=74.3
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCC
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKD 230 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~ 230 (334)
...+.+++...++.+|||||||+|+++..++.. ++...|+++|.++...+.|++++.... .-...
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a 140 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA 140 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC
Confidence 346667777888999999999999999999887 544579999999999999999877432 11346
Q ss_pred CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861 231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
.||.|++......++. .+.+.|++||++++-...
T Consensus 141 pfD~I~v~~a~~~ip~------~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 141 PFDRIIVTAAVPEIPE------ALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp SEEEEEESSBBSS--H------HHHHTEEEEEEEEEEESS
T ss_pred CcCEEEEeeccchHHH------HHHHhcCCCcEEEEEEcc
Confidence 8999999998876542 367789999999985543
No 121
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.05 E-value=2.2e-09 Score=80.83 Aligned_cols=87 Identities=25% Similarity=0.369 Sum_probs=71.2
Q ss_pred cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------C-CCCCCceEEEeCccccC-
Q 019861 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------N-FPKDSIDAVHAGAAIHC- 243 (334)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~-~~~~~fD~V~~~~vl~h- 243 (334)
+|||+|||.|.++..+.. ....+++++|+++..++.+++...... . ...++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999888 335699999999999988874322111 1 13568999999999999
Q ss_pred CCCHHHHHHHHHHcccCCcEEEEE
Q 019861 244 WSSPSTGVAEISRVLRPGGVFVGT 267 (334)
Q Consensus 244 ~~d~~~~L~~i~r~LkpgG~lii~ 267 (334)
..+...+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 778889999999999999999876
No 122
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.1e-08 Score=92.36 Aligned_cols=125 Identities=21% Similarity=0.242 Sum_probs=92.1
Q ss_pred cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------CCC--CCCceEEEeC--cc---cc
Q 019861 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------NFP--KDSIDAVHAG--AA---IH 242 (334)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~~~--~~~fD~V~~~--~v---l~ 242 (334)
+|||+|||+|..+..++...+...|+|+|+|+.+++.|+++....+ -|. .++||+|+++ ++ ..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 7999999999999999999988899999999999999998876543 022 3489999986 11 11
Q ss_pred CC-C-----CH--------------HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHH
Q 019861 243 CW-S-----SP--------------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE 302 (334)
Q Consensus 243 h~-~-----d~--------------~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 302 (334)
+. + +| ..++.++.+.|+|||.+++..-. -..+.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~---------------------------~q~~~ 245 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL---------------------------TQGEA 245 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC---------------------------CcHHH
Confidence 11 1 22 35788899999999988885432 24678
Q ss_pred HHHHHHhCC-CcEEEEe--ecCcEEEEEEEcC
Q 019861 303 IEDLCRACG-LVDFKCT--RNRGFVMFTATKP 331 (334)
Q Consensus 303 l~~ll~~~G-f~~v~~~--~~g~~~~~~a~K~ 331 (334)
+.+++++.| |..+... ..|...++.+++.
T Consensus 246 v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~~ 277 (280)
T COG2890 246 VKALFEDTGFFEIVETLKDLFGRDRVVLAKLR 277 (280)
T ss_pred HHHHHHhcCCceEEEEEecCCCceEEEEEEec
Confidence 999999999 6655533 3455555555543
No 123
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.02 E-value=3e-09 Score=96.39 Aligned_cols=149 Identities=11% Similarity=0.144 Sum_probs=106.1
Q ss_pred CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh-cCC-----CCC-CCCceEEEeCccccCCCCH--HH
Q 019861 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-QES-----NFP-KDSIDAVHAGAAIHCWSSP--ST 249 (334)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-~~~-----~~~-~~~fD~V~~~~vl~h~~d~--~~ 249 (334)
...+|+|.|.|..+..+...++ ++-|++++...+..++..+. +-. .|. -.+-|+|++.++||||.|- ..
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvk 256 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVK 256 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHH
Confidence 6899999999999999999877 89999999998888887773 211 111 2345799999999999976 58
Q ss_pred HHHHHHHcccCCcEEEEEEeccCCCCCc----hHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeec-CcEE
Q 019861 250 GVAEISRVLRPGGVFVGTTYIVDGPFNL----IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRN-RGFV 324 (334)
Q Consensus 250 ~L~~i~r~LkpgG~lii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~-g~~~ 324 (334)
+|++++..|+|||.+++.+...+.-... ...................-.+.++++.++.++||.+....-. ..+.
T Consensus 257 iLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~ 336 (342)
T KOG3178|consen 257 ILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYS 336 (342)
T ss_pred HHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCccc
Confidence 9999999999999999998865431111 1111112222222222344568999999999999999886543 3444
Q ss_pred EEEEE
Q 019861 325 MFTAT 329 (334)
Q Consensus 325 ~~~a~ 329 (334)
++.++
T Consensus 337 ~Ie~~ 341 (342)
T KOG3178|consen 337 VIEFH 341 (342)
T ss_pred hheeC
Confidence 44433
No 124
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.02 E-value=4.7e-09 Score=90.67 Aligned_cols=165 Identities=17% Similarity=0.202 Sum_probs=108.8
Q ss_pred chhhccCc-hhHHHHHHhHHHhhHhcCCCCcHHHHHHHHcccCCC-CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCC
Q 019861 133 ATEFFRMP-FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210 (334)
Q Consensus 133 ~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s 210 (334)
...+|..+ -.-..|+.+++...... |..-.+.+.+.+... ....|.|+|||.+.++. .. .-.|+.+|+.
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kW----P~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~ 208 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKW----PENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLV 208 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhC----CCChHHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeee
Confidence 33444333 33346777777554321 222234555555433 34689999999997765 11 1267777764
Q ss_pred HHHHHHHHHHHhcCCCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhh
Q 019861 211 ENMLKQCYEFVQQESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ 290 (334)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~ 290 (334)
+..-....-.+ ...|+++++.|+++.+-+|.- .|...++.++.|+|++||.++|.+...
T Consensus 209 a~~~~V~~cDm-~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S------------------- 267 (325)
T KOG3045|consen 209 AVNERVIACDM-RNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS------------------- 267 (325)
T ss_pred cCCCceeeccc-cCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh-------------------
Confidence 32111000000 225788999999999887764 588899999999999999999977532
Q ss_pred hcCccCCCCHHHHHHHHHhCCCcEEEE-eecCcEEEEEEEcCC
Q 019861 291 ISGSYTFLSEREIEDLCRACGLVDFKC-TRNRGFVMFTATKPS 332 (334)
Q Consensus 291 ~~~~~~~~t~~~l~~ll~~~Gf~~v~~-~~~g~~~~~~a~K~~ 332 (334)
++-+...+.+.+...||.+... ..+..|.++..+|+.
T Consensus 268 -----Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 268 -----RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKTP 305 (325)
T ss_pred -----hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecCC
Confidence 3457778999999999998774 456678888888764
No 125
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.00 E-value=1.9e-09 Score=92.30 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=92.4
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------------------------
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------------------------- 225 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------------------------- 225 (334)
.+..+|||||..|.++..+++......+.|+|+++..++.|++++.--.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 3678999999999999999998656789999999999999998643110
Q ss_pred -----------------------CCCCCCceEEEeCcccc--CCC--C--HHHHHHHHHHcccCCcEEEEEEeccCCCCC
Q 019861 226 -----------------------NFPKDSIDAVHAGAAIH--CWS--S--PSTGVAEISRVLRPGGVFVGTTYIVDGPFN 276 (334)
Q Consensus 226 -----------------------~~~~~~fD~V~~~~vl~--h~~--d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~ 276 (334)
.+....||+|+|..+-. |+. | ...++++|.++|.|||+|++.-..+++...
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~k 217 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKK 217 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHH
Confidence 01245799999965422 222 2 368999999999999999985544432211
Q ss_pred chHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC--CCcEEE
Q 019861 277 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC--GLVDFK 316 (334)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~--Gf~~v~ 316 (334)
... ....... .....++.++.+..++.+. ||+-++
T Consensus 218 aar----~~e~~~~-ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 218 AAR----RSEKLAA-NYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred HHH----HHHHhhc-CccceecCHHHHHhhhhhhhhheeeec
Confidence 111 1111111 1123467889999999887 675544
No 126
>PRK00811 spermidine synthase; Provisional
Probab=99.00 E-value=7.7e-09 Score=93.84 Aligned_cols=92 Identities=14% Similarity=0.230 Sum_probs=70.4
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-------CC-------------CCCCCCceEEE
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-------ES-------------NFPKDSIDAVH 236 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-------~~-------------~~~~~~fD~V~ 236 (334)
.+.+||+||||.|..+..+.+.....+++++|+++.+++.|++.+.. +. ...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 35799999999999999998764446899999999999999987642 11 11256899999
Q ss_pred eCccccCCCC----HHHHHHHHHHcccCCcEEEEEE
Q 019861 237 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 237 ~~~vl~h~~d----~~~~L~~i~r~LkpgG~lii~~ 268 (334)
+...-.+.+. ...+++.+++.|+|||++++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 8653222221 1567899999999999988753
No 127
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.00 E-value=3.8e-09 Score=101.44 Aligned_cols=107 Identities=24% Similarity=0.274 Sum_probs=84.0
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CC--C
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NF--P 228 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~--~ 228 (334)
...+...+.+.++.+|||+|||+|..+..++...+.++++++|+++.+++.+++++...+ +. +
T Consensus 227 s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 227 AQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence 345556667778899999999999999999887545799999999999999988765321 11 3
Q ss_pred CCCceEEEeC------ccccCCCC----------------HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 229 KDSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 229 ~~~fD~V~~~------~vl~h~~d----------------~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
.++||.|++. .++.+.++ ...+|.++.++|||||.++.++-...
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 4679999963 45666554 25789999999999999999888764
No 128
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.99 E-value=9.7e-09 Score=98.63 Aligned_cols=104 Identities=24% Similarity=0.320 Sum_probs=78.7
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------C----CCCCCc
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------N----FPKDSI 232 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~----~~~~~f 232 (334)
.+...+.+.++.+|||+|||+|..+..++..++...++++|+++.+++.+++++...+ . ++.++|
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence 4445566777899999999999999999988655699999999999999998865421 0 234679
Q ss_pred eEEEeCc------cccCCC------CH----------HHHHHHHHHcccCCcEEEEEEecc
Q 019861 233 DAVHAGA------AIHCWS------SP----------STGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 233 D~V~~~~------vl~h~~------d~----------~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
|.|++.. ++.+-+ .+ ..+|+.+.+.|||||++++++-..
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999532 222211 22 368999999999999999988654
No 129
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.98 E-value=1.4e-09 Score=96.69 Aligned_cols=95 Identities=26% Similarity=0.442 Sum_probs=77.7
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------------------CCCCC
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------------------NFPKD 230 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------------------~~~~~ 230 (334)
++..++|+|||-|.-+.-+-+++. ..++|+|+....++.|++++.... ++++.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 477899999999988888877764 589999999999999998765321 23456
Q ss_pred CceEEEeCccccCCC----CHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 231 SIDAVHAGAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 231 ~fD~V~~~~vl~h~~----d~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
+||+|-|.+++|.-= ....+|+.+.+.|+|||+++-+.|+.+
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 699999999988642 234689999999999999999999874
No 130
>PRK01581 speE spermidine synthase; Validated
Probab=98.98 E-value=7.2e-09 Score=95.43 Aligned_cols=132 Identities=17% Similarity=0.113 Sum_probs=89.0
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH--Hh---c----CC-------------CCCCCCceEE
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQ---Q----ES-------------NFPKDSIDAV 235 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~---~----~~-------------~~~~~~fD~V 235 (334)
+.+||+||||+|..+..+.+..+..+++++|+++.+++.|++. +. . .. ...++.||+|
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI 230 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI 230 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence 5799999999999999888876556999999999999999962 11 0 00 1124689999
Q ss_pred EeCccc--cC-CC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC
Q 019861 236 HAGAAI--HC-WS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 310 (334)
Q Consensus 236 ~~~~vl--~h-~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~ 310 (334)
++...- .. .. --..+++.+++.|+|||++++..... +... . -...+.+.++++
T Consensus 231 IvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp--------~~~~---~-----------~~~~i~~tL~~a 288 (374)
T PRK01581 231 IIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP--------ADAP---L-----------VYWSIGNTIEHA 288 (374)
T ss_pred EEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh--------hhhH---H-----------HHHHHHHHHHHh
Confidence 987321 00 00 01468999999999999988763221 1000 0 012367889999
Q ss_pred CCcEEEEee-----cCcEEEEEEEcC
Q 019861 311 GLVDFKCTR-----NRGFVMFTATKP 331 (334)
Q Consensus 311 Gf~~v~~~~-----~g~~~~~~a~K~ 331 (334)
||.+..... ++.|.+.+|.|.
T Consensus 289 f~~v~~y~t~vPsyg~~WgF~~as~~ 314 (374)
T PRK01581 289 GLTVKSYHTIVPSFGTDWGFHIAANS 314 (374)
T ss_pred CCceEEEEEecCCCCCceEEEEEeCC
Confidence 998776332 344777777663
No 131
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.98 E-value=1.5e-08 Score=91.36 Aligned_cols=90 Identities=13% Similarity=0.183 Sum_probs=69.4
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------C-------------CCCCCceEEEeC
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------N-------------FPKDSIDAVHAG 238 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~-------------~~~~~fD~V~~~ 238 (334)
+.+||+||||+|.++..+.+..+..+++++|+++.+++.+++.+.... . ..+++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 459999999999999988877645689999999999999998764311 0 014689999986
Q ss_pred ccccCCC--C--HHHHHHHHHHcccCCcEEEEE
Q 019861 239 AAIHCWS--S--PSTGVAEISRVLRPGGVFVGT 267 (334)
Q Consensus 239 ~vl~h~~--d--~~~~L~~i~r~LkpgG~lii~ 267 (334)
.....-+ + ...+++.+++.|+|||++++.
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 5422111 1 357889999999999999986
No 132
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.97 E-value=6.7e-09 Score=95.40 Aligned_cols=95 Identities=15% Similarity=0.187 Sum_probs=72.1
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCc
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSI 232 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~f 232 (334)
.+.+.+...++.+|||||||+|.++..+++... ...|+++|+++.+++.|++++...+ ....++|
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~f 150 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPY 150 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCc
Confidence 444555666788999999999999999988653 2479999999999999998765321 1123579
Q ss_pred eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
|+|++...+++++ ..+.+.|+|||++++..
T Consensus 151 D~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 151 DVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cEEEECCchHHhH------HHHHHhcCCCCEEEEEe
Confidence 9999987766542 34678999999988854
No 133
>PRK04457 spermidine synthase; Provisional
Probab=98.95 E-value=9.9e-09 Score=92.03 Aligned_cols=94 Identities=11% Similarity=0.116 Sum_probs=72.7
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---C-------------CCCCCceEEEeCcc
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---N-------------FPKDSIDAVHAGAA 240 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---~-------------~~~~~fD~V~~~~v 240 (334)
++.+|||||||+|.++..++...+..+++++|+++.+++.|++.+.... . -..++||+|++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 4678999999999999999988877899999999999999998865321 0 11357999998531
Q ss_pred c-cCCC---CHHHHHHHHHHcccCCcEEEEEEec
Q 019861 241 I-HCWS---SPSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 241 l-~h~~---d~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
- ...+ ....+++++++.|+|||++++....
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 1 1111 1258999999999999999986543
No 134
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.95 E-value=3.7e-09 Score=90.20 Aligned_cols=101 Identities=21% Similarity=0.243 Sum_probs=68.7
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHh---cC---C--------CCCCCC
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQ---QE---S--------NFPKDS 231 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~---~~---~--------~~~~~~ 231 (334)
+....+....++.+|||+|||+|.++..++... ...+++|+|+++.+ . . ..+. .+ . .+++++
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-~-~-~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-P-I-ENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-c-C-CCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 344444455668899999999999999888774 34579999999854 0 0 0000 00 0 134568
Q ss_pred ceEEEeCccc--------cCCC---CHHHHHHHHHHcccCCcEEEEEEec
Q 019861 232 IDAVHAGAAI--------HCWS---SPSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 232 fD~V~~~~vl--------~h~~---d~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
||+|++.... +|.. +...+|+.+.++|+|||++++..+.
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 9999986432 2211 1257899999999999999997544
No 135
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.92 E-value=6.1e-08 Score=85.78 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=109.6
Q ss_pred CCCCCcEEEECCCcCHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHHhcCC-----------CCC-------CCCceE
Q 019861 175 PVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQES-----------NFP-------KDSIDA 234 (334)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~-----------~~~-------~~~fD~ 234 (334)
...+-+||||.||.|..........+. .++.-.|+++..++..++.++..+ .|. +...++
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 345679999999999988877777654 689999999999999998766532 111 345799
Q ss_pred EEeCccccCCCCHH---HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHH-hhhhcCccCCCCHHHHHHHHHhC
Q 019861 235 VHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN-MMQISGSYTFLSEREIEDLCRAC 310 (334)
Q Consensus 235 V~~~~vl~h~~d~~---~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~l~~ll~~~ 310 (334)
++.+.++|.++|-. ..|+.+.+.|.|||.++.+...+. +...+..+.-.. -.......+..|..++.++.+.+
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH---PQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~a 289 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH---PQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAA 289 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC---cchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHc
Confidence 99999999999853 578999999999999988654322 222222221111 01011234567999999999999
Q ss_pred CCcEEE--EeecCcEEEEEEEc
Q 019861 311 GLVDFK--CTRNRGFVMFTATK 330 (334)
Q Consensus 311 Gf~~v~--~~~~g~~~~~~a~K 330 (334)
||+.++ +-..|.|.|-.|+|
T Consensus 290 GF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 290 GFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred CCchhhheeccCCceEEEeecC
Confidence 998766 34567787777765
No 136
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=1.1e-08 Score=98.43 Aligned_cols=107 Identities=22% Similarity=0.234 Sum_probs=81.4
Q ss_pred HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC--------------C---
Q 019861 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES--------------N--- 226 (334)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~--------------~--- 226 (334)
....+...+.+.++.+|||+|||+|..+..++... ..++++++|+++.+++.+++++...+ +
T Consensus 240 ~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 240 SAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK 319 (434)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc
Confidence 33445556677778999999999999999888763 34689999999999999988765322 1
Q ss_pred -CCCCCceEEEeC------ccccCCCC----------------HHHHHHHHHHcccCCcEEEEEEecc
Q 019861 227 -FPKDSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 227 -~~~~~fD~V~~~------~vl~h~~d----------------~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
...++||.|++. .++.+-++ ...+|.++.++|||||+++.++-..
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 224689999973 35555444 2477999999999999999877654
No 137
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.88 E-value=1.3e-08 Score=86.47 Aligned_cols=129 Identities=11% Similarity=0.169 Sum_probs=92.5
Q ss_pred CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCC---CCCCceEEEeCccccCCCCHH---HHHH
Q 019861 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF---PKDSIDAVHAGAAIHCWSSPS---TGVA 252 (334)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~~~~fD~V~~~~vl~h~~d~~---~~L~ 252 (334)
.++|||||=+...... ..+. ..|+.||+++..-...+.-+-. .|+ ++++||+|.++-||+++++|. .+|+
T Consensus 53 lrlLEVGals~~N~~s--~~~~-fdvt~IDLns~~~~I~qqDFm~-rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~ 128 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGW-FDVTRIDLNSQHPGILQQDFME-RPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLR 128 (219)
T ss_pred ceEEeecccCCCCccc--ccCc-eeeEEeecCCCCCCceeecccc-CCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHH
Confidence 6999999976544332 2232 3699999987432222211111 123 467999999999999999996 7999
Q ss_pred HHHHcccCCcE-----EEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCcEEEEE
Q 019861 253 EISRVLRPGGV-----FVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFT 327 (334)
Q Consensus 253 ~i~r~LkpgG~-----lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~~~~~~ 327 (334)
.+.+.|+|+|. ++++.|..- ....+|++.+.|.++++..||..++.........+.
T Consensus 129 r~~~fL~~~g~~~~~~LFlVlP~~C-------------------v~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l 189 (219)
T PF11968_consen 129 RAHKFLKPPGLSLFPSLFLVLPLPC-------------------VTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWL 189 (219)
T ss_pred HHHHHhCCCCccCcceEEEEeCchH-------------------hhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEE
Confidence 99999999999 888887631 125678999999999999999999876555433333
Q ss_pred EEc
Q 019861 328 ATK 330 (334)
Q Consensus 328 a~K 330 (334)
.+|
T Consensus 190 ~r~ 192 (219)
T PF11968_consen 190 FRK 192 (219)
T ss_pred Eee
Confidence 333
No 138
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.88 E-value=1.1e-08 Score=87.52 Aligned_cols=87 Identities=22% Similarity=0.359 Sum_probs=69.4
Q ss_pred cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCceEEEeCcccc
Q 019861 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKDSIDAVHAGAAIH 242 (334)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD~V~~~~vl~ 242 (334)
.+||||||.|.++..++...|+..++|+|+....+..+.++..... -++++++|.|...+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F--- 96 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF--- 96 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC---
Confidence 8999999999999999999999999999999999988887655322 14568999998765
Q ss_pred CCCCH-------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861 243 CWSSP-------------STGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 243 h~~d~-------------~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
||| ..+|..+.++|+|||.+.+.+-..
T Consensus 97 --PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 97 --PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE 136 (195)
T ss_dssp -------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred --CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence 555 478999999999999999977654
No 139
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.85 E-value=7.7e-08 Score=85.60 Aligned_cols=130 Identities=21% Similarity=0.177 Sum_probs=95.8
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc---CC--------------------------C-
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---ES--------------------------N- 226 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---~~--------------------------~- 226 (334)
...+||--|||-|+++..++..|. .+.|.|.|--|+-...-.+.. .. |
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 456999999999999999999987 999999999887654432221 00 0
Q ss_pred -----------------------C-C---CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchH
Q 019861 227 -----------------------F-P---KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 279 (334)
Q Consensus 227 -----------------------~-~---~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~ 279 (334)
+ + .++||+|+..+.|.-.+|....|+.|.++|||||..+=.-|..-......
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~- 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS- 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC-
Confidence 0 1 26899999999999888999999999999999997776555443221100
Q ss_pred HHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEee
Q 019861 280 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 319 (334)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~ 319 (334)
...+..--++.+++.++++..||++++...
T Consensus 213 ----------~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 ----------IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ----------CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000112357899999999999999887443
No 140
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.83 E-value=3.1e-08 Score=95.09 Aligned_cols=106 Identities=14% Similarity=0.200 Sum_probs=79.3
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC------------C---CCCC
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES------------N---FPKD 230 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~------------~---~~~~ 230 (334)
..+...+.+.++.+|||+|||+|..+..++... ...+++++|+++.+++.+++++...+ . +.++
T Consensus 227 ~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~ 306 (431)
T PRK14903 227 QIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQD 306 (431)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhc
Confidence 344455677778999999999999998888763 34699999999999999998866432 1 2256
Q ss_pred CceEEEeC------ccccCCCC----------------HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 231 SIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 231 ~fD~V~~~------~vl~h~~d----------------~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
+||.|++. .++.+-++ ...+|.++.+.|||||.++.++-...
T Consensus 307 ~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 307 TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 89999973 22322221 14568999999999999999888754
No 141
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.82 E-value=4.3e-08 Score=88.11 Aligned_cols=102 Identities=19% Similarity=0.163 Sum_probs=75.3
Q ss_pred cccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEE
Q 019861 171 GYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAV 235 (334)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V 235 (334)
..+.+.++.+|||+|||+|..+..++... ..+.++++|+++.+++.+++++.... +...+.||.|
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEE
Confidence 34566678899999999999998887763 23589999999999999998765432 1123569999
Q ss_pred EeC------ccccCCCC----------------HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 236 HAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 236 ~~~------~vl~h~~d----------------~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
++. .++.+-++ ...+|+.+.+.|||||+++.++-...
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 973 22322221 13589999999999999998876543
No 142
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.82 E-value=5.1e-09 Score=88.91 Aligned_cols=138 Identities=20% Similarity=0.298 Sum_probs=102.3
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh------------cCCCCCCCCceEEEeCccccCCC
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ------------QESNFPKDSIDAVHAGAAIHCWS 245 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~------------~~~~~~~~~fD~V~~~~vl~h~~ 245 (334)
-..++||||+-|.....+...+ -.+++-+|.|..|++.++..-. +..+|.++++|+|+++..+|+..
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~N 151 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTN 151 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhc
Confidence 3589999999999999999987 4589999999999999986411 12368899999999999999999
Q ss_pred CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHH-HHHhhhhcCccCCC-CHHHHHHHHHhCCCcEEE
Q 019861 246 SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL-RQNMMQISGSYTFL-SEREIEDLCRACGLVDFK 316 (334)
Q Consensus 246 d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-t~~~l~~ll~~~Gf~~v~ 316 (334)
|...-+.+++..|||+|.++.+....+......-.+... -....+...|...| -..++-.+|.++||....
T Consensus 152 dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~t 224 (325)
T KOG2940|consen 152 DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLT 224 (325)
T ss_pred cCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccce
Confidence 988999999999999999998877765321111111100 01111223354443 458899999999997654
No 143
>PLN02366 spermidine synthase
Probab=98.82 E-value=1.2e-07 Score=86.71 Aligned_cols=92 Identities=17% Similarity=0.244 Sum_probs=70.1
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----C---------------CCCCCCceEEE
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----S---------------NFPKDSIDAVH 236 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----~---------------~~~~~~fD~V~ 236 (334)
.+++||+||||.|..+..+.+.....+++.+|+++.+++.+++.+... . ..++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 367999999999999999988743458999999999999999976431 0 12246899999
Q ss_pred eCccccCCCC----HHHHHHHHHHcccCCcEEEEEE
Q 019861 237 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 237 ~~~vl~h~~d----~~~~L~~i~r~LkpgG~lii~~ 268 (334)
+...-.+.+. ...+++.+++.|+|||+++...
T Consensus 171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 8654322221 1368999999999999987643
No 144
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.82 E-value=3.3e-08 Score=95.53 Aligned_cols=105 Identities=24% Similarity=0.257 Sum_probs=77.2
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC------------CCC---CC
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES------------NFP---KD 230 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~---~~ 230 (334)
..+...+...++.+|||+|||+|..+..+++.. +.++++++|+++.+++.+++++...+ .+. .+
T Consensus 240 ~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 240 MLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcc
Confidence 344556666678899999999999999988763 45699999999999999998765322 111 26
Q ss_pred CceEEEeCc------cccCCCC----------------HHHHHHHHHHcccCCcEEEEEEecc
Q 019861 231 SIDAVHAGA------AIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 231 ~fD~V~~~~------vl~h~~d----------------~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
+||+|++.. ++.+-++ ...+|+.+.++|||||.++.++-..
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 799999742 2222221 1357999999999999999776544
No 145
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.79 E-value=5.6e-08 Score=93.91 Aligned_cols=105 Identities=20% Similarity=0.244 Sum_probs=77.0
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCce
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSID 233 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD 233 (334)
.....+...++.+|||+|||+|..+..+++.. ...+++++|+++.+++.+++++...+ ..++++||
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD 320 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPD 320 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCC
Confidence 34445566678899999999999888887653 23589999999999999998765422 12356799
Q ss_pred EEEeC------ccccCCC------C----------HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 234 AVHAG------AAIHCWS------S----------PSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 234 ~V~~~------~vl~h~~------d----------~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
+|++. .++..-+ + ...+|.++.+.|+|||+++.++-...
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99963 1221111 1 23589999999999999999887764
No 146
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.79 E-value=6.3e-08 Score=85.41 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=75.2
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCCC--------------------
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN-------------------- 226 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~-------------------- 226 (334)
.+...+...++++|||||||+|..+..++.. ...++++++|+++.+++.|++++...+-
T Consensus 59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~ 138 (234)
T PLN02781 59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN 138 (234)
T ss_pred HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh
Confidence 3434444455789999999999988888765 3357999999999999999998764321
Q ss_pred -CCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 227 -FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 227 -~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
.+.++||+|+....= ++....+..+.+.|+|||.+++....+
T Consensus 139 ~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 139 NDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred CCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 114689999886431 234577899999999999988865544
No 147
>PRK03612 spermidine synthase; Provisional
Probab=98.79 E-value=5.4e-08 Score=95.60 Aligned_cols=132 Identities=15% Similarity=0.053 Sum_probs=87.8
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH--Hhc-------CC-------------CCCCCCceE
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQ-------ES-------------NFPKDSIDA 234 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~~-------~~-------------~~~~~~fD~ 234 (334)
++++|||||||+|..+..+.+.....+++++|+++++++.++++ +.. +. ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 46799999999999999988764336999999999999999983 211 11 012468999
Q ss_pred EEeCccccCCCCH-----HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861 235 VHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 309 (334)
Q Consensus 235 V~~~~vl~h~~d~-----~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~ 309 (334)
|++...-...+.+ ..+++.+++.|+|||++++...... . +.-...++.+.+++
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~--------~--------------~~~~~~~i~~~l~~ 434 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY--------F--------------APKAFWSIEATLEA 434 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc--------c--------------chHHHHHHHHHHHH
Confidence 9997543322221 3588999999999999988653211 0 00012367888999
Q ss_pred CCCcEEEEe----ecCcEEEEEEEc
Q 019861 310 CGLVDFKCT----RNRGFVMFTATK 330 (334)
Q Consensus 310 ~Gf~~v~~~----~~g~~~~~~a~K 330 (334)
.||.+.... +.|.|....+.|
T Consensus 435 ~gf~v~~~~~~vps~g~w~f~~as~ 459 (521)
T PRK03612 435 AGLATTPYHVNVPSFGEWGFVLAGA 459 (521)
T ss_pred cCCEEEEEEeCCCCcchhHHHeeeC
Confidence 999433311 224444555544
No 148
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.79 E-value=6.6e-09 Score=98.17 Aligned_cols=107 Identities=23% Similarity=0.362 Sum_probs=78.2
Q ss_pred HHHHHHHHcccCC----CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEE---eCCHHHHHHHHHHH---------hcCCC
Q 019861 163 EKEFELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVAL---DYSENMLKQCYEFV---------QQESN 226 (334)
Q Consensus 163 ~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gi---D~s~~~~~~a~~~~---------~~~~~ 226 (334)
....+.|.+.++. ..-..+||||||+|.|+..|.+.+- ....+ |-.+..++.|.++- ....|
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLP 176 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLP 176 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhcCcchhhhhhcccccc
Confidence 3445555555544 2224789999999999999999863 33333 44456677776641 23458
Q ss_pred CCCCCceEEEeCccccCCC-CHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 227 FPKDSIDAVHAGAAIHCWS-SPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 227 ~~~~~fD~V~~~~vl~h~~-d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
|++++||+|+|...+..+. +-..+|-++.|+|+|||+++++.+-.
T Consensus 177 fp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 177 FPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred CCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 9999999999999987765 33568899999999999999987754
No 149
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.77 E-value=7.9e-08 Score=83.78 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=74.0
Q ss_pred CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCceEEEeCccc
Q 019861 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKDSIDAVHAGAAI 241 (334)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD~V~~~~vl 241 (334)
..+||||||.|.++..+++..|...++|||+....+..+.+++.... -+++++.|-|..++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-- 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF-- 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC--
Confidence 58999999999999999999999999999999998888887765432 13456999998775
Q ss_pred cCCCCH-------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861 242 HCWSSP-------------STGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 242 ~h~~d~-------------~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
||| ..+|+.+.++|+|||.+.+.+-+.
T Consensus 128 ---PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 128 ---PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred ---CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 555 478999999999999999987654
No 150
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.73 E-value=1.8e-07 Score=78.39 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=69.9
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEE
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAV 235 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V 235 (334)
.+.+.+...++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.... ++++..||.|
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEE
Confidence 445556666678999999999999999998854 99999999999999998865321 2344568999
Q ss_pred EeCccccCCCCHHHHHHHHHHc--ccCCcEEEEEEecc
Q 019861 236 HAGAAIHCWSSPSTGVAEISRV--LRPGGVFVGTTYIV 271 (334)
Q Consensus 236 ~~~~vl~h~~d~~~~L~~i~r~--LkpgG~lii~~~~~ 271 (334)
+++-- .|+. ...+..+.+. +.++|.+++.....
T Consensus 82 i~n~P-y~~~--~~~i~~~l~~~~~~~~~~l~~q~e~a 116 (169)
T smart00650 82 VGNLP-YNIS--TPILFKLLEEPPAFRDAVLMVQKEVA 116 (169)
T ss_pred EECCC-cccH--HHHHHHHHhcCCCcceEEEEEEHHHh
Confidence 88643 3332 3344444443 34778887755443
No 151
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.71 E-value=1.5e-07 Score=80.36 Aligned_cols=130 Identities=18% Similarity=0.193 Sum_probs=93.7
Q ss_pred cccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH-----Hhc-------------CCCCCCCCc
Q 019861 171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF-----VQQ-------------ESNFPKDSI 232 (334)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~-----~~~-------------~~~~~~~~f 232 (334)
..++...+.+|||...|-|+++....++|. .+|+-++.++..++.|+-+ +.. -..|+|.+|
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 345566789999999999999999999984 5899999999988887632 110 125889999
Q ss_pred eEEEeC---ccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCC-CHHHHHHHHH
Q 019861 233 DAVHAG---AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFL-SEREIEDLCR 308 (334)
Q Consensus 233 D~V~~~---~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~~~l~~ll~ 308 (334)
|+|+.. +++.-----..+-++++|+|+|||.++-.+-+...- ++-. -...+.+.|+
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r--------------------yrG~d~~~gVa~RLr 266 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR--------------------YRGLDLPKGVAERLR 266 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc--------------------cccCChhHHHHHHHH
Confidence 999863 221110123578999999999999999877664310 1111 2467889999
Q ss_pred hCCCcEEEEeecC
Q 019861 309 ACGLVDFKCTRNR 321 (334)
Q Consensus 309 ~~Gf~~v~~~~~g 321 (334)
++||++++.....
T Consensus 267 ~vGF~~v~~~~~~ 279 (287)
T COG2521 267 RVGFEVVKKVREA 279 (287)
T ss_pred hcCceeeeeehhc
Confidence 9999988765443
No 152
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.70 E-value=2e-07 Score=94.74 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=70.0
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC---------------C--CCCCceEEEeCc
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN---------------F--PKDSIDAVHAGA 239 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~---------------~--~~~~fD~V~~~~ 239 (334)
++.+|||+|||+|.++..++..|. .+|+++|+|+.+++.+++++..... + ..++||+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 368999999999999999998763 4799999999999999998753210 0 145899999841
Q ss_pred -----------cccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 240 -----------AIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 240 -----------vl~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
+.....+...++..+.++|+|||.+++...
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 111122345678889999999999887543
No 153
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.65 E-value=3.1e-07 Score=87.00 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=66.2
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----C--------------C--CCCCceEEE
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----N--------------F--PKDSIDAVH 236 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----~--------------~--~~~~fD~V~ 236 (334)
++.+|||+|||+|.++..++..+ ..+++++|+|+.+++.+++++.... . + ..++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 36899999999999987766554 3589999999999999998865321 0 1 135899999
Q ss_pred eCccc--c-------CCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 237 AGAAI--H-------CWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 237 ~~~vl--~-------h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
+.-=- . ...+...++..+.++|+|||.+++..-
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 86211 0 001223455677899999999987654
No 154
>PHA03412 putative methyltransferase; Provisional
Probab=98.64 E-value=3.9e-07 Score=79.29 Aligned_cols=143 Identities=14% Similarity=0.110 Sum_probs=85.4
Q ss_pred cCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHHHhcCC--------
Q 019861 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQES-------- 225 (334)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~giD~s~~~~~~a~~~~~~~~-------- 225 (334)
+.|.-|......+... ...+.+|||+|||+|.++..++... +..+++++|+++.+++.|+++.....
T Consensus 31 GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~ 108 (241)
T PHA03412 31 GAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALT 108 (241)
T ss_pred CccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhc
Confidence 4455566655554322 2236799999999999999888752 24589999999999999998753211
Q ss_pred CCCCCCceEEEeCcc---cc--CC-----C-C-HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcC
Q 019861 226 NFPKDSIDAVHAGAA---IH--CW-----S-S-PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG 293 (334)
Q Consensus 226 ~~~~~~fD~V~~~~v---l~--h~-----~-d-~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (334)
...+++||+|+++== +. +. . . ...+++.+.+++++|+ +++ |.. ..++. .....+..
T Consensus 109 ~~~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL--P~~-----~~~~~----y~~~~~~~ 176 (241)
T PHA03412 109 TEFDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FII--PQM-----SANFR----YSGTHYFR 176 (241)
T ss_pred ccccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEe--Ccc-----cccCc----ccCcccee
Confidence 112468999999621 11 11 0 1 3468888888666666 433 211 11110 00000000
Q ss_pred ccCCCCHHHHHHHHHhCCCc
Q 019861 294 SYTFLSEREIEDLCRACGLV 313 (334)
Q Consensus 294 ~~~~~t~~~l~~ll~~~Gf~ 313 (334)
...-.+.....+++++-|+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~ 196 (241)
T PHA03412 177 QDESTTSSKCKKFLDETGLE 196 (241)
T ss_pred eccCcccHHHHHHHHhcCee
Confidence 11224567788888888874
No 155
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.64 E-value=4.2e-07 Score=87.80 Aligned_cols=100 Identities=19% Similarity=0.298 Sum_probs=71.8
Q ss_pred HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------------
Q 019861 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------------ 225 (334)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------------ 225 (334)
.+.+.+.+++...++.+|||+|||+|.++..++..+. +++|+|+|+.+++.|+++.....
T Consensus 284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh
Confidence 4455566666666678999999999999999998864 99999999999999998764321
Q ss_pred CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 226 NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 226 ~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
++.+++||+|++.---. .....++.+.+ ++|++.++++..
T Consensus 362 ~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 362 PWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred hhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEeC
Confidence 12245799998742111 12244555555 688898888653
No 156
>PLN02672 methionine S-methyltransferase
Probab=98.64 E-value=5e-07 Score=94.21 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=83.2
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------------C----------CCC
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------------S----------NFP 228 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------------~----------~~~ 228 (334)
+.+|||+|||+|..+..++...+..+++|+|+|+.+++.|+++.... . .+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999887679999999999999998876531 0 122
Q ss_pred C--CCceEEEeC--c------------cccCC--------------------CCH----HHHHHHHHHcccCCcEEEEEE
Q 019861 229 K--DSIDAVHAG--A------------AIHCW--------------------SSP----STGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 229 ~--~~fD~V~~~--~------------vl~h~--------------------~d~----~~~L~~i~r~LkpgG~lii~~ 268 (334)
+ ..||+|+++ + |.+|- .|- ..++.++.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2 269999986 1 22111 111 467788888999999988855
Q ss_pred eccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHH-HHHHhCCCcEEEEee
Q 019861 269 YIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE-DLCRACGLVDFKCTR 319 (334)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~-~ll~~~Gf~~v~~~~ 319 (334)
... ..+.+. +++++.||+.+..+.
T Consensus 279 G~~---------------------------q~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 279 GGR---------------------------PGQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred Ccc---------------------------HHHHHHHHHHHHCCCCeeEEee
Confidence 432 244666 588888887766443
No 157
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.63 E-value=3.3e-07 Score=79.10 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=81.1
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC------------------CC
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES------------------NF 227 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~------------------~~ 227 (334)
..+...+....+++|||||.+.|+.+.+++...+ +.+++.+|+++++.+.|++++...+ ..
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 3344444445678999999999999999999876 7899999999999999999877543 12
Q ss_pred CCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCC
Q 019861 228 PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG 273 (334)
Q Consensus 228 ~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~ 273 (334)
..++||+|+....= .+...++..+.+.|+|||.+++-.....+
T Consensus 129 ~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 129 LDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred cCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 35899999976531 14467899999999999999886665543
No 158
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.62 E-value=2.6e-07 Score=80.72 Aligned_cols=109 Identities=21% Similarity=0.129 Sum_probs=79.4
Q ss_pred HHHHHHHHcccCCC---CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------
Q 019861 163 EKEFELMKGYLKPV---LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------- 225 (334)
Q Consensus 163 ~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------- 225 (334)
++..+.+.+.++.. .+..|||+|||+|..+..+....+.+.++++|.|+.++..|.++.....
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 45555555555332 3457999999999999999999888999999999999999998755321
Q ss_pred ------CCCCCCceEEEeCc--cc----cCC--------------------CCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 226 ------NFPKDSIDAVHAGA--AI----HCW--------------------SSPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 226 ------~~~~~~fD~V~~~~--vl----~h~--------------------~d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
+..++++|+++++= +. ..+ .....++.-+.|.|+|||.+.+.....
T Consensus 211 d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 211 DASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred ccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 34568999999862 11 100 111245677889999999999987754
No 159
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.61 E-value=2.1e-07 Score=78.23 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=69.4
Q ss_pred CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------C-----CCCCCce
Q 019861 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------N-----FPKDSID 233 (334)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~-----~~~~~fD 233 (334)
...+.+|||+|||+|..+..++......+|+..|.++ .++..+.++.... + ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3457899999999999999998883346999999998 8888887765432 0 2245899
Q ss_pred EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
+|++..++..-.....+++-+.++|+++|.+++....+
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99999999987677789999999999999988877765
No 160
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.61 E-value=9.9e-08 Score=81.52 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=61.3
Q ss_pred CCCcEEEECCCcCH----HHHHHHHc-----CCCCeEEEEeCCHHHHHHHHHH------Hh-------------cCC---
Q 019861 177 LGGNIIDASCGSGL----FSRIFAKS-----GLFSLVVALDYSENMLKQCYEF------VQ-------------QES--- 225 (334)
Q Consensus 177 ~~~~vLDiGcG~G~----~~~~l~~~-----~~~~~v~giD~s~~~~~~a~~~------~~-------------~~~--- 225 (334)
+.-+|+.+||++|. ++..+.+. ....+++|+|+|+.+++.|++- +. ...
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999994 34444441 2246899999999999999852 00 000
Q ss_pred --------------------CCCCCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEE
Q 019861 226 --------------------NFPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 267 (334)
Q Consensus 226 --------------------~~~~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~ 267 (334)
+.+.+.||+|+|.+||-++.+. ..+++.+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 1235789999999999999865 58999999999999999983
No 161
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.59 E-value=1.9e-06 Score=79.05 Aligned_cols=136 Identities=10% Similarity=0.115 Sum_probs=81.6
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-C--------------------CCCCCceEE
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-N--------------------FPKDSIDAV 235 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~--------------------~~~~~fD~V 235 (334)
.+.++||||||+|.....++...+..+++|+|+++.+++.|++++.... - .+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4679999999999888777776556699999999999999998876541 0 124589999
Q ss_pred EeCccccCCCC-----HHHHHHH----------------HHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCc
Q 019861 236 HAGAAIHCWSS-----PSTGVAE----------------ISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS 294 (334)
Q Consensus 236 ~~~~vl~h~~d-----~~~~L~~----------------i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (334)
+|+==++--.+ ...-.+. ..+++.+||.+-+..+..... ..+... ..++... .
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS---~~~~~~-~gwftsm--v 267 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES---KAFAKQ-VLWFTSL--V 267 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH---HHHHhh-CcEEEEE--e
Confidence 99732221111 1111222 234455677765544433210 000000 0011111 1
Q ss_pred cCCCCHHHHHHHHHhCCCcEEEEe
Q 019861 295 YTFLSEREIEDLCRACGLVDFKCT 318 (334)
Q Consensus 295 ~~~~t~~~l~~ll~~~Gf~~v~~~ 318 (334)
...-+.+.+.+.|++.|...+.+.
T Consensus 268 ~kk~~l~~l~~~L~~~~~~~~~~~ 291 (321)
T PRK11727 268 SKKENLPPLYRALKKVGAVEVKTI 291 (321)
T ss_pred eccCCHHHHHHHHHHcCCceEEEE
Confidence 123378999999999999666543
No 162
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.58 E-value=1.2e-06 Score=84.56 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=68.5
Q ss_pred HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------------C
Q 019861 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------------N 226 (334)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------------~ 226 (334)
+.+.+.+++...++.+|||+|||+|.++..+++... +|+|+|+++.+++.|++++.... .
T Consensus 280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~ 357 (431)
T TIGR00479 280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP 357 (431)
T ss_pred HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH
Confidence 445556666655678999999999999999998765 89999999999999998765321 0
Q ss_pred CCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEE
Q 019861 227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 267 (334)
Q Consensus 227 ~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~ 267 (334)
+.+++||+|++.--=. .-...+++.+.+ |+|++.++++
T Consensus 358 ~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 358 WAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred hcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEc
Confidence 1234688888642210 112455666554 7888877764
No 163
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.57 E-value=1.9e-07 Score=82.62 Aligned_cols=143 Identities=17% Similarity=0.276 Sum_probs=88.8
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------------------------
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------------------------ 225 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------------------------ 225 (334)
.++.++||||||.-..- .+...-...+++..|+.+..++..++-+....
T Consensus 55 ~~g~~llDiGsGPtiy~-~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQ-LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp S-EEEEEEES-TT--GG-GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHh-hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 35679999999985432 22222223489999999988876665333211
Q ss_pred --------------CCCC-----CCceEEEeCccccCCC-CH---HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHH
Q 019861 226 --------------NFPK-----DSIDAVHAGAAIHCWS-SP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR 282 (334)
Q Consensus 226 --------------~~~~-----~~fD~V~~~~vl~h~~-d~---~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~ 282 (334)
++.. ..||+|++...||... |. ..+++++.++|||||.|++...........
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~v----- 208 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMV----- 208 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEE-----
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEE-----
Confidence 2322 2599999999999775 44 478999999999999999977755321000
Q ss_pred HHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEee------cCcEEEEEEEc
Q 019861 283 LLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR------NRGFVMFTATK 330 (334)
Q Consensus 283 ~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~------~g~~~~~~a~K 330 (334)
....-..-..+.+.+++.++++||.+.+... ......++|+|
T Consensus 209 ------G~~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 209 ------GGHKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp ------TTEEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred ------CCEecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 0000122357899999999999998887543 12345555655
No 164
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.56 E-value=4.4e-07 Score=78.17 Aligned_cols=93 Identities=13% Similarity=0.125 Sum_probs=72.8
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC---------------------CCCCCCce
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES---------------------NFPKDSID 233 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~---------------------~~~~~~fD 233 (334)
...++|||||+++|+.+.+++...+ .++++.+|+++...+.|++.+...+ ..+.+.||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3467999999999999999998754 5799999999999999998876432 01235899
Q ss_pred EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
+|+....= .+....+..+.+.|+|||.+++-....
T Consensus 124 ~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEcccc---cchhhHHHHHhhhccCCeEEEEccccc
Confidence 99987632 245677888999999999988855543
No 165
>PLN02476 O-methyltransferase
Probab=98.54 E-value=1.1e-06 Score=78.74 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=77.0
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCCC-----------------C-
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN-----------------F- 227 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~-----------------~- 227 (334)
..+...+...++++|||||+++|..+.+++... +.+.++.+|.++...+.|+++++..+- +
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~ 187 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI 187 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence 334444444557899999999999999998763 356899999999999999998765431 1
Q ss_pred ---CCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 228 ---PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 228 ---~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
..++||+|+...- -.+....++.+.+.|+|||.+++-...+.
T Consensus 188 ~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 188 QNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred hcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 1358999998753 12446788999999999999888555443
No 166
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.51 E-value=2.3e-06 Score=73.40 Aligned_cols=104 Identities=12% Similarity=0.120 Sum_probs=68.2
Q ss_pred HHHHHHcccCC-CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-------------C--C
Q 019861 165 EFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-------------F--P 228 (334)
Q Consensus 165 ~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-------------~--~ 228 (334)
..+.+...+.. .++.+|||+|||+|.++..+...+. .+++++|.++.+++.+++++..... + .
T Consensus 40 v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~ 118 (199)
T PRK10909 40 VRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP 118 (199)
T ss_pred HHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc
Confidence 33344444422 3467999999999999987655553 5999999999999999987654320 1 1
Q ss_pred CCCceEEEeCccccCCCCHHHHHHHHHHc--ccCCcEEEEEEec
Q 019861 229 KDSIDAVHAGAAIHCWSSPSTGVAEISRV--LRPGGVFVGTTYI 270 (334)
Q Consensus 229 ~~~fD~V~~~~vl~h~~d~~~~L~~i~r~--LkpgG~lii~~~~ 270 (334)
.++||+|++.==.. -.-...+++.+... |+|+|.++++...
T Consensus 119 ~~~fDlV~~DPPy~-~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 119 GTPHNVVFVDPPFR-KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCCceEEEECCCCC-CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 34689998764311 11123455555553 7888888886554
No 167
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.50 E-value=5.8e-07 Score=81.16 Aligned_cols=90 Identities=13% Similarity=0.184 Sum_probs=67.6
Q ss_pred CCcEEEECCCcCH----HHHHHHHcC----CCCeEEEEeCCHHHHHHHHHH------------------Hhc----C-C-
Q 019861 178 GGNIIDASCGSGL----FSRIFAKSG----LFSLVVALDYSENMLKQCYEF------------------VQQ----E-S- 225 (334)
Q Consensus 178 ~~~vLDiGcG~G~----~~~~l~~~~----~~~~v~giD~s~~~~~~a~~~------------------~~~----~-~- 225 (334)
.-+|+..||++|. ++..+.+.. ...+++|+|+|+.+++.|++- +.. . +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999994 334444432 135899999999999999852 100 0 0
Q ss_pred ---------------------CCC-CCCceEEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEE
Q 019861 226 ---------------------NFP-KDSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGT 267 (334)
Q Consensus 226 ---------------------~~~-~~~fD~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~ 267 (334)
+++ .+.||+|+|.++|.|+.+ ...+++++.+.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 122 478999999999999965 468999999999999988773
No 168
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.48 E-value=2.6e-07 Score=81.42 Aligned_cols=90 Identities=27% Similarity=0.418 Sum_probs=72.5
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc--------CCCCCCCCceEEEeCccccCCCCH--
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--------ESNFPKDSIDAVHAGAAIHCWSSP-- 247 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~~~~~~fD~V~~~~vl~h~~d~-- 247 (334)
+..++|+|||.|..+. ..|.+.++|.|++...+..+++.-.. ..|+++.+||.+++..|+||+...
T Consensus 46 gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~R 121 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRER 121 (293)
T ss_pred cceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHH
Confidence 7899999999995442 22556899999999988888764331 237889999999999999999854
Q ss_pred -HHHHHHHHHcccCCcEEEEEEecc
Q 019861 248 -STGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 248 -~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
..+++++.++|+|||..++..+..
T Consensus 122 R~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 122 RERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHhcCCCceEEEEehh
Confidence 579999999999999988866654
No 169
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.47 E-value=4.2e-07 Score=84.57 Aligned_cols=95 Identities=27% Similarity=0.336 Sum_probs=80.7
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh---------------cCCCCCCCCceEEEeCcc
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ---------------QESNFPKDSIDAVHAGAA 240 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~---------------~~~~~~~~~fD~V~~~~v 240 (334)
.++..++|+|||.|.....++... ...++|+|.++..+..+..... ...+++++.||.+-+..+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 446789999999999999998875 4689999999987776654322 123789999999999999
Q ss_pred ccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
..|.+++..+++|++++++|||.++..++..
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred cccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence 9999999999999999999999999977765
No 170
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.47 E-value=2e-06 Score=78.53 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=81.6
Q ss_pred HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCC
Q 019861 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFP 228 (334)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~ 228 (334)
++...+..+....+|..|||-=||||.++..+.-.|. +++|.|++..|++.++.++.... +++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~ 261 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCC
Confidence 4455566666667789999999999999999998876 99999999999999998876432 577
Q ss_pred CCCceEEEeCc------cccCC--CC-HHHHHHHHHHcccCCcEEEEEEe
Q 019861 229 KDSIDAVHAGA------AIHCW--SS-PSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 229 ~~~fD~V~~~~------vl~h~--~d-~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
+.++|+|++.- ...-. .+ ...+|+.+.++|++||++++..+
T Consensus 262 ~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 262 DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 77899999741 11111 11 25789999999999999999776
No 171
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.46 E-value=1e-06 Score=86.22 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=72.8
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeCcc
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAGAA 240 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~~v 240 (334)
.+..+||||||.|.++..++...|+..++|+|+....+..+.++..... .++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F- 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF- 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC-
Confidence 3568999999999999999999999999999999988777766543321 25678888888765
Q ss_pred ccCCCCH-------------HHHHHHHHHcccCCcEEEEEEec
Q 019861 241 IHCWSSP-------------STGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 241 l~h~~d~-------------~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
||| ..+|+.++++|+|||.+.+.+-.
T Consensus 426 ----PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 426 ----PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred ----CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 444 47899999999999999987654
No 172
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.45 E-value=1.8e-06 Score=79.64 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=64.6
Q ss_pred HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC---------------CCC
Q 019861 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN---------------FPK 229 (334)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~---------------~~~ 229 (334)
+.+.+.+++...++.+|||+|||+|.++..++..+. +|+|+|+++.+++.|+++.....- ...
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~ 238 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQG 238 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcC
Confidence 334445555444568999999999999999999764 999999999999999987654320 123
Q ss_pred CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 230 DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 230 ~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
+.||+|++.---. .-...++ ++...++|++.++++.
T Consensus 239 ~~~D~Vv~dPPr~--G~~~~~~-~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 239 EVPDLVLVNPPRR--GIGKELC-DYLSQMAPRFILYSSC 274 (315)
T ss_pred CCCeEEEECCCCC--CccHHHH-HHHHHcCCCeEEEEEC
Confidence 4688888762100 0011222 3333366777666644
No 173
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=1.5e-05 Score=66.47 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=43.3
Q ss_pred CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~ 223 (334)
....+.+|+|+|||+|.++...+-.|+ ..|+|+|+++++++.++++...
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE 90 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh
Confidence 344577899999999999999999885 5999999999999999998775
No 174
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.39 E-value=1.4e-06 Score=79.22 Aligned_cols=89 Identities=20% Similarity=0.319 Sum_probs=67.0
Q ss_pred CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCc
Q 019861 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGA 239 (334)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~ 239 (334)
..+++.|||+|||+|-++...+++| ..+|+++|.|.-+ +.|.+.+.... .+|..+.|+|++-+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 4568899999999999999999999 4799999976544 77777655432 35678899999854
Q ss_pred c---ccCCCCHHHHHHHHHHcccCCcEEE
Q 019861 240 A---IHCWSSPSTGVAEISRVLRPGGVFV 265 (334)
Q Consensus 240 v---l~h~~d~~~~L~~i~r~LkpgG~li 265 (334)
. |-+-.-...+|-.=-+.|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 3 2222233456777778999999775
No 175
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.37 E-value=4.1e-06 Score=75.62 Aligned_cols=106 Identities=17% Similarity=0.114 Sum_probs=74.3
Q ss_pred HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCCC--------------CCC
Q 019861 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN--------------FPK 229 (334)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~--------------~~~ 229 (334)
.+..+...++...+.+|||+|+|.|..+..+.+..+ ..+++++|.|+.|++.++..+..... .+-
T Consensus 21 vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (274)
T PF09243_consen 21 VLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF 100 (274)
T ss_pred HHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC
Confidence 334455555555678999999999987766665432 34899999999999998876553321 112
Q ss_pred CCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccC
Q 019861 230 DSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 230 ~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
...|+|++.++|..+++. ..+++.+.+.+.+ .|++.++...
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 234999999999999872 2455666555554 8888888753
No 176
>PRK00536 speE spermidine synthase; Provisional
Probab=98.36 E-value=2.6e-06 Score=75.81 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=69.4
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CC---CCCCceEEEeCccc
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NF---PKDSIDAVHAGAAI 241 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~---~~~~fD~V~~~~vl 241 (334)
.+++||=||.|.|..++.+.+.-. +|+-+|+++.+++.+++.+.... .+ ..++||+|+....
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~- 148 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQE- 148 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCC-
Confidence 358999999999999999999853 99999999999999998654311 11 2368999998742
Q ss_pred cCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 242 HCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 242 ~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
.+..+.+.+++.|+|||.++....
T Consensus 149 ----~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 149 ----PDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred ----CChHHHHHHHHhcCCCcEEEECCC
Confidence 446778999999999999998543
No 177
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.4e-06 Score=71.98 Aligned_cols=96 Identities=22% Similarity=0.324 Sum_probs=70.4
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHHHHhcCC------------------
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQES------------------ 225 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~------------------ 225 (334)
++.+...+ .+|.+.||+|.|+|+++..++.. .++...+|||.-++.++.+++++....
T Consensus 73 le~L~~~L--~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 73 LEYLDDHL--QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHhh--ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 34444444 45899999999999998888743 223356999999999999998876432
Q ss_pred ------CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 226 ------NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 226 ------~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
.-+..+||.|++...-. ...+++...|++||.+++...
T Consensus 151 GDgr~g~~e~a~YDaIhvGAaa~------~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAAAS------ELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CCccccCCccCCcceEEEccCcc------ccHHHHHHhhccCCeEEEeec
Confidence 12356899999985433 346678889999999998544
No 178
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=4.5e-05 Score=63.02 Aligned_cols=115 Identities=19% Similarity=0.247 Sum_probs=80.7
Q ss_pred CCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEEEeCc--c
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAVHAGA--A 240 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V~~~~--v 240 (334)
.....+||||||+|..+.+++.. ++++.+.++|+|+.+++..++....+. .+..++.|+++.+- |
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYV 121 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcC
Confidence 33678999999999998888776 677889999999999988776544332 13347888888752 2
Q ss_pred c---cCC------------CC----HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHH
Q 019861 241 I---HCW------------SS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER 301 (334)
Q Consensus 241 l---~h~------------~d----~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 301 (334)
. +.+ .| ...+|..+-.+|.|.|++++...-.+ .++
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--------------------------~p~ 175 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN--------------------------KPK 175 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc--------------------------CHH
Confidence 1 111 11 13456667778889999888655432 366
Q ss_pred HHHHHHHhCCCcEEE
Q 019861 302 EIEDLCRACGLVDFK 316 (334)
Q Consensus 302 ~l~~ll~~~Gf~~v~ 316 (334)
++.++++..||.+..
T Consensus 176 ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 176 EILKILEKKGYGVRI 190 (209)
T ss_pred HHHHHHhhcccceeE
Confidence 888899999996644
No 179
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.33 E-value=2.1e-05 Score=64.04 Aligned_cols=125 Identities=18% Similarity=0.297 Sum_probs=97.3
Q ss_pred HHHhHHHh--hHhcCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHh
Q 019861 146 YERGWRQN--FVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQ 222 (334)
Q Consensus 146 ~~~~w~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~ 222 (334)
+-++|-.. ......+......+.+..-+.+..+.-|||+|.|+|-++..+...+. ...++.+|.+++......+.+.
T Consensus 15 F~k~wi~~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p 94 (194)
T COG3963 15 FFKGWIDNPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP 94 (194)
T ss_pred HHHHHhcCCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC
Confidence 33445432 23344555667778888888888899999999999999999998863 4689999999999999988766
Q ss_pred cCC--------------CCCCCCceEEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEec
Q 019861 223 QES--------------NFPKDSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 223 ~~~--------------~~~~~~fD~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
+.. ...+..||.|++.--+-.++- ..+.|+++...|..||.++..+..
T Consensus 95 ~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 95 GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 542 345678999999877766663 357899999999999999887766
No 180
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.31 E-value=3.8e-06 Score=75.26 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=57.0
Q ss_pred HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------CCCCCCce
Q 019861 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------NFPKDSID 233 (334)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~~~~~~fD 233 (334)
...+.+.+.+...++.+|||||||+|.++..+++.+. +++|+|+++.+++.+++++.... .++...||
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d 93 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN 93 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence 3445666666666788999999999999999999865 99999999999999998765321 12234578
Q ss_pred EEEeCc
Q 019861 234 AVHAGA 239 (334)
Q Consensus 234 ~V~~~~ 239 (334)
.|+++-
T Consensus 94 ~Vv~Nl 99 (258)
T PRK14896 94 KVVSNL 99 (258)
T ss_pred EEEEcC
Confidence 888764
No 181
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.30 E-value=4.8e-06 Score=74.35 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=69.3
Q ss_pred CCcEEEECCCcCH----HHHHHHHcCC-----CCeEEEEeCCHHHHHHHHHH------H-hcC--------------C--
Q 019861 178 GGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEF------V-QQE--------------S-- 225 (334)
Q Consensus 178 ~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~giD~s~~~~~~a~~~------~-~~~--------------~-- 225 (334)
.-+|+-+||++|. ++..+.+.++ ..+++|+|+|..+++.|+.- . ... +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5699999999993 4555555542 47899999999999999842 1 100 0
Q ss_pred --------------------CCCCCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEE
Q 019861 226 --------------------NFPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 267 (334)
Q Consensus 226 --------------------~~~~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~ 267 (334)
....+.||+|+|.+||-.+..+ ..++..++..|+|||+|++.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1134569999999999999866 47999999999999999983
No 182
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.29 E-value=2.7e-07 Score=77.32 Aligned_cols=90 Identities=17% Similarity=0.070 Sum_probs=72.6
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHH-hcC----CCCCCCCceEEEeCccccCCCCHHHHHH
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV-QQE----SNFPKDSIDAVHAGAAIHCWSSPSTGVA 252 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~-~~~----~~~~~~~fD~V~~~~vl~h~~d~~~~L~ 252 (334)
+.++||+|+|.|..+..++.... +|++.+.|..|....+++- .-. ..-.+-+||+|.|.++|.---+|-..|+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~ 190 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLE 190 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHHH
Confidence 46999999999999999998765 8999999999988777531 111 1122457999999999988889999999
Q ss_pred HHHHcccC-CcEEEEEEe
Q 019861 253 EISRVLRP-GGVFVGTTY 269 (334)
Q Consensus 253 ~i~r~Lkp-gG~lii~~~ 269 (334)
.|+.+|+| .|++++.-.
T Consensus 191 Di~~vl~psngrvivaLV 208 (288)
T KOG3987|consen 191 DIHLVLAPSNGRVIVALV 208 (288)
T ss_pred HHHHHhccCCCcEEEEEE
Confidence 99999999 888776443
No 183
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.28 E-value=5.6e-06 Score=72.42 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=73.7
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHH-HHHHHh----cCCC--------C--CCCCceEEEeCcc
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ-CYEFVQ----QESN--------F--PKDSIDAVHAGAA 240 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~-a~~~~~----~~~~--------~--~~~~fD~V~~~~v 240 (334)
.++.++||+|||+|.++..+++.| ..+|+|+|+++.++.. .++... +..+ + .-..+|+++.+..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 457799999999999999999986 3589999999987775 332111 0011 1 1124565555543
Q ss_pred ccCCCCHHHHHHHHHHcccCCcEEEE-EEeccCCCCCchHHHHHHHHHhhh--h--cCccCCCCHHHHHHHHHhCCCcEE
Q 019861 241 IHCWSSPSTGVAEISRVLRPGGVFVG-TTYIVDGPFNLIPFSRLLRQNMMQ--I--SGSYTFLSEREIEDLCRACGLVDF 315 (334)
Q Consensus 241 l~h~~d~~~~L~~i~r~LkpgG~lii-~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~t~~~l~~ll~~~Gf~~v 315 (334)
+ +|..+.+.|+| |.+++ .-|-.+- ....... . ....+..-.+++...+.+.||++.
T Consensus 153 ~--------~l~~i~~~l~~-~~~~~L~KPqFE~----------~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 153 S--------ILPELDLLLNP-NDLTLLFKPQFEA----------GREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred h--------HHHHHHHHhCc-CeEEEEcChHhhh----------cHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 2 48889999999 76554 3232211 0000000 0 001122235677788888999876
Q ss_pred EEe
Q 019861 316 KCT 318 (334)
Q Consensus 316 ~~~ 318 (334)
...
T Consensus 214 ~~~ 216 (228)
T TIGR00478 214 KII 216 (228)
T ss_pred eEE
Confidence 643
No 184
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.28 E-value=7.2e-06 Score=72.60 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=75.3
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCCC-----------------C-
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN-----------------F- 227 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~-----------------~- 227 (334)
.++...+...+.++|||||+++|+.+.+++... +.++++.+|.++...+.|++.+...+- +
T Consensus 69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~ 148 (247)
T PLN02589 69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI 148 (247)
T ss_pred HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH
Confidence 334444444456799999999999999888763 457999999999999999998765430 1
Q ss_pred ----CCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 228 ----PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 228 ----~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
..++||+|+...-= .+....+..+.+.|+|||.+++-...+
T Consensus 149 ~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 149 EDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred hccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 12689999987541 134567888899999999988744443
No 185
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.27 E-value=1.1e-05 Score=72.79 Aligned_cols=92 Identities=14% Similarity=0.190 Sum_probs=73.0
Q ss_pred CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--CC-----------------CCCCceE
Q 019861 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NF-----------------PKDSIDA 234 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--~~-----------------~~~~fD~ 234 (334)
.+.+ ++||-||.|.|.+++.+.+..+..+++.+|+++..++.+++.+.... .+ ...+||+
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 3433 69999999999999999999877799999999999999999866432 11 1237999
Q ss_pred EEeCccccCCCCH------HHHHHHHHHcccCCcEEEEEE
Q 019861 235 VHAGAAIHCWSSP------STGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 235 V~~~~vl~h~~d~------~~~L~~i~r~LkpgG~lii~~ 268 (334)
|++.-.=. . .| ..+++.+++.|+++|+++...
T Consensus 153 Ii~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 153 IIVDSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEEcCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 99865321 1 22 689999999999999999873
No 186
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.25 E-value=1.2e-05 Score=75.98 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=68.5
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCC-CCCceEEEeCccccC
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFP-KDSIDAVHAGAAIHC 243 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~-~~~fD~V~~~~vl~h 243 (334)
+.+|||++||+|.++..++.......|+++|+++.+++.+++++.... .+. .+.||+|++.=
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 468999999999999999876444589999999999999998764321 012 45799999853
Q ss_pred CCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 244 WSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 244 ~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
...+..+|....+.+++||.++++.
T Consensus 134 ~Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 FGSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CCCcHHHHHHHHHHhcCCCEEEEEe
Confidence 1456778888788899999999983
No 187
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.24 E-value=1.1e-05 Score=76.23 Aligned_cols=98 Identities=10% Similarity=0.106 Sum_probs=66.0
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-------------C--CCC
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-------------F--PKD 230 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-------------~--~~~ 230 (334)
++.+..++...++.+|||+|||+|.++..++..+. .++|+|+++.+++.|+++...... . ..+
T Consensus 222 ~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~ 299 (374)
T TIGR02085 222 YATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMS 299 (374)
T ss_pred HHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCC
Confidence 34444554434567999999999999999997764 999999999999999987654320 1 113
Q ss_pred CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
.||+|++.==-.. -...+++.+. .++|++.++++.
T Consensus 300 ~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 300 APELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEe
Confidence 5888877521111 1134455554 478888888754
No 188
>PLN02823 spermine synthase
Probab=98.23 E-value=9.8e-06 Score=75.00 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=67.8
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------C-------------CCCCCCceEEEeC
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------S-------------NFPKDSIDAVHAG 238 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~-------------~~~~~~fD~V~~~ 238 (334)
+.+||.||+|.|..+..+.+..+..+++.+|+++.+++.+++.+... . ...+++||+|++.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 57999999999999998888654568999999999999999886421 1 1124689999987
Q ss_pred ccccCCC-C------HHHHHH-HHHHcccCCcEEEEEE
Q 019861 239 AAIHCWS-S------PSTGVA-EISRVLRPGGVFVGTT 268 (334)
Q Consensus 239 ~vl~h~~-d------~~~~L~-~i~r~LkpgG~lii~~ 268 (334)
.. .... . ...+++ .+++.|+|||++++..
T Consensus 184 ~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 184 LA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred CC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 32 1110 1 135777 8999999999987743
No 189
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.23 E-value=3.9e-06 Score=75.79 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=49.2
Q ss_pred HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh
Q 019861 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (334)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~ 222 (334)
....+.+.+.+...++.+|||||||+|.++..+++.+. +++|+|+++.+++.+++++.
T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~ 85 (272)
T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA 85 (272)
T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc
Confidence 34455666667767788999999999999999999976 99999999999999988764
No 190
>PRK04148 hypothetical protein; Provisional
Probab=98.21 E-value=9.3e-06 Score=64.54 Aligned_cols=99 Identities=11% Similarity=0.119 Sum_probs=64.2
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---CCCC-----CCCceEEE
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---SNFP-----KDSIDAVH 236 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~-----~~~fD~V~ 236 (334)
.+.+.+.+...++.+|||||||+|. ++..|++.|. .|+++|+++..++.+++..... .-|. -+.+|+|.
T Consensus 5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEE
Confidence 3455565655567899999999996 8888998886 9999999999999888763211 1111 24578887
Q ss_pred eCccccCCCCHHHHHHHHHHcccC-CcEEEEEEeccC
Q 019861 237 AGAAIHCWSSPSTGVAEISRVLRP-GGVFVGTTYIVD 272 (334)
Q Consensus 237 ~~~vl~h~~d~~~~L~~i~r~Lkp-gG~lii~~~~~~ 272 (334)
+.. -|..+..-+.++-+. |.-+++.....+
T Consensus 83 sir------pp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 83 SIR------PPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred EeC------CCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 764 233333333333332 455666665554
No 191
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=1.5e-05 Score=69.85 Aligned_cols=100 Identities=15% Similarity=0.257 Sum_probs=79.8
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CC
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES-----------------NF 227 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~ 227 (334)
..+|...+...||.+|||-|.|+|.++.++++. +|.++++-+|+...-.+.|++.+...+ ..
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 457788888889999999999999999999887 677899999999999999998887654 12
Q ss_pred CCCCceEEEeCccccCCCCHHHHHHHHHHcccCCc-EEEEEEec
Q 019861 228 PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG-VFVGTTYI 270 (334)
Q Consensus 228 ~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG-~lii~~~~ 270 (334)
.+..+|+|+. .++.|..++-.++++||.+| ++.--.|.
T Consensus 174 ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 174 KSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred cccccceEEE-----cCCChhhhhhhhHHHhhhcCceEEeccHH
Confidence 2455666665 46899999999999999877 55544443
No 192
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.20 E-value=6.9e-06 Score=74.80 Aligned_cols=73 Identities=11% Similarity=0.101 Sum_probs=56.5
Q ss_pred HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCC
Q 019861 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKD 230 (334)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~ 230 (334)
...+.+.+.+...++.+|||||||+|.++..+.+.+. +++++|+++.+++.+++++.... ..+..
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 3445666666666788999999999999999998865 89999999999999998775321 12234
Q ss_pred CceEEEeC
Q 019861 231 SIDAVHAG 238 (334)
Q Consensus 231 ~fD~V~~~ 238 (334)
.||.|+++
T Consensus 101 ~~d~VvaN 108 (294)
T PTZ00338 101 YFDVCVAN 108 (294)
T ss_pred ccCEEEec
Confidence 68888864
No 193
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.19 E-value=2.4e-05 Score=69.36 Aligned_cols=133 Identities=20% Similarity=0.144 Sum_probs=82.1
Q ss_pred CcEEEECCCcC--HHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHhcCCC-------------------------CCCC
Q 019861 179 GNIIDASCGSG--LFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESN-------------------------FPKD 230 (334)
Q Consensus 179 ~~vLDiGcG~G--~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~-------------------------~~~~ 230 (334)
...||||||-- .....+++ ..|.++|+.+|.++..+..++..+..... +.-.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 58999999953 34444444 46788999999999999999887665431 1122
Q ss_pred CceEEEeCccccCCCC---HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHH
Q 019861 231 SIDAVHAGAAIHCWSS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 307 (334)
Q Consensus 231 ~fD~V~~~~vl~h~~d---~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll 307 (334)
.-=.|++..+|||++| |..+++.+++.|.||.+|+++....+... .........+.......+..|.+++..+|
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p---~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f 226 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP---ERAEALEAVYAQAGSPGRPRSREEIAAFF 226 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH---HHHHHHHHHHHHCCS----B-HHHHHHCC
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH---HHHHHHHHHHHcCCCCceecCHHHHHHHc
Confidence 3347888999999974 78999999999999999999998875431 11233334444444566778999999999
Q ss_pred HhCCCcEEE
Q 019861 308 RACGLVDFK 316 (334)
Q Consensus 308 ~~~Gf~~v~ 316 (334)
. ||+.++
T Consensus 227 ~--g~elve 233 (267)
T PF04672_consen 227 D--GLELVE 233 (267)
T ss_dssp T--TSEE-T
T ss_pred C--CCccCC
Confidence 6 888776
No 194
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=3.8e-06 Score=67.84 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=79.4
Q ss_pred cHHHHHHHHcccCCCCCCcEEEECCCcCHH-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------
Q 019861 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------- 225 (334)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~-~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------- 225 (334)
.+.+.-.+++......+.+|||+|.|.-.+ +..++...+...|...|=++..++..++......
T Consensus 14 eeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~ 93 (201)
T KOG3201|consen 14 EEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW 93 (201)
T ss_pred HHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh
Confidence 344444555555556678999999996444 4555556667799999999998888776543321
Q ss_pred ----CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 226 ----NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 226 ----~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
......||.|++...+..-..-...++.|+..|+|.|..++..|-+
T Consensus 94 ~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 94 GAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred hhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 1224589999999887654445678899999999999988877765
No 195
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.15 E-value=2.1e-05 Score=75.58 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=57.6
Q ss_pred CCcEEEECCCcCHHHHHHHHcC----CCCeEEEEeCCHHHHHHHHHHHhcCC-------------CC-CCCCceEEEeCc
Q 019861 178 GGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQES-------------NF-PKDSIDAVHAGA 239 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~----~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~-~~~~fD~V~~~~ 239 (334)
+..|||||||+|-++...++++ ...+|+++|-|+.+....++++.... .+ ...++|+|++-.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 5789999999999987776654 34699999999988877665533221 11 134899999832
Q ss_pred --cccCCCCHHHHHHHHHHcccCCcEEE
Q 019861 240 --AIHCWSSPSTGVAEISRVLRPGGVFV 265 (334)
Q Consensus 240 --vl~h~~d~~~~L~~i~r~LkpgG~li 265 (334)
.+-.-.--...|....|.|||||.++
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 21111122346888999999999765
No 196
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.14 E-value=1.3e-05 Score=73.88 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=78.3
Q ss_pred cCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-------CCCCeEEEEeCCHHHHHHHHHHHhcCC----
Q 019861 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-------GLFSLVVALDYSENMLKQCYEFVQQES---- 225 (334)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~giD~s~~~~~~a~~~~~~~~---- 225 (334)
+.|.-|....+++...+.+.++.+|+|..||+|.++..+.+. .....++|+|+++.++..++-++.-..
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 457778888999999998877889999999999998888763 234689999999999988876532111
Q ss_pred -------------CCC-CCCceEEEeC--cccc-C----C-CC-------------HHHHHHHHHHcccCCcEEEEEEec
Q 019861 226 -------------NFP-KDSIDAVHAG--AAIH-C----W-SS-------------PSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 226 -------------~~~-~~~fD~V~~~--~vl~-h----~-~d-------------~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
... ...||+|+++ +... + . .+ ...++..+.+.|++||++.+..|.
T Consensus 106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 106 NINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp GCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 111 4689999985 1111 0 0 01 126889999999999999998886
No 197
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.14 E-value=3.6e-05 Score=68.77 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=48.4
Q ss_pred HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh
Q 019861 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (334)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~ 222 (334)
...+.+.+.+...++.+|||||||+|.++..+++.+. .++++|+++.+++.+++++.
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhC
Confidence 3445666666666788999999999999999999986 79999999999999998764
No 198
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.11 E-value=4.1e-05 Score=68.04 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=69.0
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC-------------CCCC-CceEEE
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN-------------FPKD-SIDAVH 236 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~-------------~~~~-~fD~V~ 236 (334)
.+.+||-||.|.|..+..+.+..+..+++.+|+++.+++.+++.+... .. -..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 468999999999999999998765569999999999999999875421 10 1123 899999
Q ss_pred eCccccCCCC----HHHHHHHHHHcccCCcEEEEEEec
Q 019861 237 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 237 ~~~vl~h~~d----~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
....-...+. -..+++.+++.|+|||++++....
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 8543222222 147899999999999999987744
No 199
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.06 E-value=1.1e-05 Score=68.28 Aligned_cols=95 Identities=20% Similarity=0.214 Sum_probs=58.4
Q ss_pred CCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHH-------------HHHHHhcCCCCCCCCceEEEeCcccc
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQ-------------CYEFVQQESNFPKDSIDAVHAGAAIH 242 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~-------------a~~~~~~~~~~~~~~fD~V~~~~vl~ 242 (334)
++.++||+||++|.|+..+...+ +...|+|+|+.+...-. ..+.+.....-..+.+|+|++.....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~ 102 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPN 102 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-----
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccccccC
Confidence 45899999999999999999997 44699999998751000 00011111011226899999987443
Q ss_pred CCCC----H-------HHHHHHHHHcccCCcEEEEEEecc
Q 019861 243 CWSS----P-------STGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 243 h~~d----~-------~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
...+ . ...|.-+...|+|||.+++.....
T Consensus 103 ~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 103 VSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp --SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 3322 1 234555667899999999877763
No 200
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.05 E-value=0.00013 Score=61.65 Aligned_cols=97 Identities=21% Similarity=0.237 Sum_probs=66.0
Q ss_pred HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCe---------EEEEeCCHHHHHHHHHHHhcCC---------
Q 019861 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL---------VVALDYSENMLKQCYEFVQQES--------- 225 (334)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~---------v~giD~s~~~~~~a~~~~~~~~--------- 225 (334)
.+...+.......++..|||--||+|.++...+..+.... ++|.|+++.+++.+++++....
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 3344555566666788999999999999988877655445 8899999999999999876432
Q ss_pred ------CCCCCCceEEEeCccccC-CCC-------HHHHHHHHHHcccC
Q 019861 226 ------NFPKDSIDAVHAGAAIHC-WSS-------PSTGVAEISRVLRP 260 (334)
Q Consensus 226 ------~~~~~~fD~V~~~~vl~h-~~d-------~~~~L~~i~r~Lkp 260 (334)
++.++++|+|+++-=.-. +.+ ...+++++.++|++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 345678999998521110 011 13578889999998
No 201
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.05 E-value=0.0001 Score=62.86 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=61.1
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-----------------C-CCC-CceEEEe
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-----------------F-PKD-SIDAVHA 237 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-----------------~-~~~-~fD~V~~ 237 (334)
.+.++||++||+|.++..++.+|. ..++++|.++.+++.+++++....- + ... .||+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 468999999999999999999985 5899999999999999887643210 1 112 3666666
Q ss_pred CccccCCCCHHHHHHHHH--HcccCCcEEEEEEec
Q 019861 238 GAAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYI 270 (334)
Q Consensus 238 ~~vl~h~~d~~~~L~~i~--r~LkpgG~lii~~~~ 270 (334)
.=-.. .......+..+. .+|+++|.+++....
T Consensus 128 DPPy~-~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFF-NGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCC-CCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 32111 112233444443 357788877776543
No 202
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.04 E-value=6.2e-05 Score=67.32 Aligned_cols=142 Identities=18% Similarity=0.131 Sum_probs=98.3
Q ss_pred HHHHHHHcccCC----CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHH---hcCC-----------
Q 019861 164 KEFELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV---QQES----------- 225 (334)
Q Consensus 164 ~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~---~~~~----------- 225 (334)
...+.+..+.+. ...-+||--|||.|.++..++..|+ .+.|-++|--|+--..=.+ ....
T Consensus 133 pii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~ 210 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQY 210 (369)
T ss_pred hHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecc
Confidence 344555555543 2346899999999999999999998 7888888877664322111 1000
Q ss_pred ----------------------------CC---------------CCCCceEEEeCccccCCCCHHHHHHHHHHcccCCc
Q 019861 226 ----------------------------NF---------------PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262 (334)
Q Consensus 226 ----------------------------~~---------------~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG 262 (334)
+| ..+.||+|+.++.+..-.|....|+.|..+|||||
T Consensus 211 sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GG 290 (369)
T KOG2798|consen 211 SNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGG 290 (369)
T ss_pred ccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCc
Confidence 01 12469999999988888888999999999999999
Q ss_pred EEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861 263 VFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 317 (334)
Q Consensus 263 ~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~ 317 (334)
+.+=..|..-........ .....--++.+++..+.+..||++++.
T Consensus 291 vWiNlGPLlYHF~d~~g~----------~~~~siEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 291 VWINLGPLLYHFEDTHGV----------ENEMSIELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred EEEeccceeeeccCCCCC----------cccccccccHHHHHHHHHhcCcEEEEe
Confidence 988766654322111000 011223578999999999999998874
No 203
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.02 E-value=0.00011 Score=62.13 Aligned_cols=85 Identities=18% Similarity=0.172 Sum_probs=66.0
Q ss_pred cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH---HHhcCC----------CCCCCCceEEEeCccccCCCC
Q 019861 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE---FVQQES----------NFPKDSIDAVHAGAAIHCWSS 246 (334)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~---~~~~~~----------~~~~~~fD~V~~~~vl~h~~d 246 (334)
+++|||+|.|.-+..++-..|..+++.+|.+..-+...+. .+.-.. .....+||+|++..+ ..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv----~~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAV----AP 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESS----SS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehh----cC
Confidence 7999999999999999988888899999999865555443 332211 245688999999986 45
Q ss_pred HHHHHHHHHHcccCCcEEEEEE
Q 019861 247 PSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 247 ~~~~L~~i~r~LkpgG~lii~~ 268 (334)
...++.-+...|++||.+++.-
T Consensus 127 l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEc
Confidence 6788889999999999988854
No 204
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.98 E-value=8e-07 Score=71.14 Aligned_cols=50 Identities=28% Similarity=0.389 Sum_probs=44.2
Q ss_pred cCCCCCCCCceEEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 223 QESNFPKDSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 223 ~~~~~~~~~fD~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
....|.+++.|+|.+.+|+||+.- -..+++++++.|||||+|-+..|...
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 345789999999999999999984 35889999999999999999999874
No 205
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.91 E-value=0.00041 Score=63.79 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=68.8
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHHHHh-cCCC----------------
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQ-QESN---------------- 226 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~-~~~~---------------- 226 (334)
.|...++. +..|+|+|||+|.=+..|.+ .+....|+++|+|..+++.+.+++. ..-|
T Consensus 69 ~Ia~~i~~--~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~ 146 (319)
T TIGR03439 69 DIAASIPS--GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA 146 (319)
T ss_pred HHHHhcCC--CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHh
Confidence 34444443 56899999999975444433 3334589999999999999998877 3211
Q ss_pred -CCC----CCceEEEeC-ccccCCCCHH--HHHHHHHH-cccCCcEEEEEE
Q 019861 227 -FPK----DSIDAVHAG-AAIHCWSSPS--TGVAEISR-VLRPGGVFVGTT 268 (334)
Q Consensus 227 -~~~----~~fD~V~~~-~vl~h~~d~~--~~L~~i~r-~LkpgG~lii~~ 268 (334)
++. ....+|+.. .+|-++...+ .+|+++++ .|+|||.+++..
T Consensus 147 ~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 147 WLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred hcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 111 234555554 4777776554 78999999 999999988854
No 206
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.91 E-value=0.00011 Score=71.05 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=72.5
Q ss_pred CCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCCC---------------CCCCCceEEEe
Q 019861 174 KPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN---------------FPKDSIDAVHA 237 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~---------------~~~~~fD~V~~ 237 (334)
.+.++.+|||+++|.|.=+.+++... ..+.+++.|+++.-++..++++...+- ...+.||.|+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 56778999999999999888888763 245899999999999999887764320 11356999994
Q ss_pred ----C--ccccCCCCH----------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861 238 ----G--AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 238 ----~--~vl~h~~d~----------------~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
+ .++..-++. ..+|..+.+.|||||+|+-+|-..
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 3 223322211 467899999999999998777654
No 207
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.90 E-value=4.8e-05 Score=65.19 Aligned_cols=92 Identities=24% Similarity=0.322 Sum_probs=63.2
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CC-CCCCce
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NF-PKDSID 233 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~-~~~~fD 233 (334)
.+.+.+. ++..|||+-||.|.++..+++.+....|+++|+++.+++.++++..... .+ +.+.+|
T Consensus 94 Ri~~~v~--~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~d 171 (200)
T PF02475_consen 94 RIANLVK--PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFD 171 (200)
T ss_dssp HHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EE
T ss_pred HHHhcCC--cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccC
Confidence 3444444 4789999999999999999985555689999999999999998765432 12 267899
Q ss_pred EEEeCccccCCCCHHHHHHHHHHcccCCcEEE
Q 019861 234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265 (334)
Q Consensus 234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~li 265 (334)
-|+|..- ..-..+|..+.+++++||++-
T Consensus 172 rvim~lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 172 RVIMNLP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEE--T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred EEEECCh----HHHHHHHHHHHHHhcCCcEEE
Confidence 8888642 122357888999999998763
No 208
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.89 E-value=0.00018 Score=57.81 Aligned_cols=91 Identities=30% Similarity=0.488 Sum_probs=65.4
Q ss_pred EEEECCCcCHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHhc--C--------------CCCCC-CCceEEEeCcccc
Q 019861 181 IIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQ--E--------------SNFPK-DSIDAVHAGAAIH 242 (334)
Q Consensus 181 vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~--~--------------~~~~~-~~fD~V~~~~vl~ 242 (334)
++|+|||+|... .+...... ..++|+|+++.++..++..... . .++.. ..||++ ......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999866 33333221 3789999999988886554311 0 23344 479999 555544
Q ss_pred CCCCHHHHHHHHHHcccCCcEEEEEEeccCC
Q 019861 243 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDG 273 (334)
Q Consensus 243 h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~ 273 (334)
|..++...+.++.+.|+|+|.+++.......
T Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4444889999999999999999998887653
No 209
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.88 E-value=8.8e-05 Score=69.72 Aligned_cols=93 Identities=20% Similarity=0.184 Sum_probs=73.6
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC--------------------CCCCCceEEEe
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN--------------------FPKDSIDAVHA 237 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~--------------------~~~~~fD~V~~ 237 (334)
|++|||+=|=||.++..++..|. .+|+++|.|...++.|++++.-.+- -...+||+|++
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 88999999999999999999874 5999999999999999998765431 11358999997
Q ss_pred C---------ccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 238 G---------AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 238 ~---------~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
. ....-..+-..++..+.++|+|||.+++.+...
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 3 111111244578899999999999999977654
No 210
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.88 E-value=8.5e-05 Score=73.44 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=45.2
Q ss_pred CCCcHHHHHHHHcccCCC-------CCCcEEEECCCcCHHHHHHHHcCC--------CCeEEEEeCCHHHHHHHHHHHh
Q 019861 159 FPGPEKEFELMKGYLKPV-------LGGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQ 222 (334)
Q Consensus 159 ~~~~~~~~~~l~~~l~~~-------~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~giD~s~~~~~~a~~~~~ 222 (334)
|.-|....+.+...+... ...+|||.|||+|.++..+..... ...++|+|+++..+..++.++.
T Consensus 6 fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 6 FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 344555555555544211 345899999999999988876532 2578999999999999987654
No 211
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.84 E-value=5.4e-05 Score=64.10 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=71.4
Q ss_pred HHHHHHHcccCC--CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------
Q 019861 164 KEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------- 225 (334)
Q Consensus 164 ~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------- 225 (334)
+..+.+...+.. ..+.++||+-||+|.++..+..+|. .+|+.+|.++..++..+++++...
T Consensus 27 rvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l 105 (183)
T PF03602_consen 27 RVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL 105 (183)
T ss_dssp HHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH
T ss_pred HHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH
Confidence 333444444432 3578999999999999999999884 599999999999999998766322
Q ss_pred -CC--CCCCceEEEeCccccCCCC-HHHHHHHHH--HcccCCcEEEEEEecc
Q 019861 226 -NF--PKDSIDAVHAGAAIHCWSS-PSTGVAEIS--RVLRPGGVFVGTTYIV 271 (334)
Q Consensus 226 -~~--~~~~fD~V~~~~vl~h~~d-~~~~L~~i~--r~LkpgG~lii~~~~~ 271 (334)
.. ....||+|++.==.. ... ...++..+. .+|+++|.+++.....
T Consensus 106 ~~~~~~~~~fDiIflDPPY~-~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 106 LKLAKKGEKFDIIFLDPPYA-KGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHCTS-EEEEEE--STT-SCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HhhcccCCCceEEEECCCcc-cchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 01 367899999852111 112 256677776 7899999999987764
No 212
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.83 E-value=0.00018 Score=61.79 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=74.5
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC---------------------
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES--------------------- 225 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--------------------- 225 (334)
++...+....+++.||||.=+|+.+..++...| .++|+++|+++...+.+.+..+..+
T Consensus 64 fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~ 143 (237)
T KOG1663|consen 64 FLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLA 143 (237)
T ss_pred HHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHh
Confidence 444444445568999999999998888887754 4799999999999999877654322
Q ss_pred CCCCCCceEEEeCccccCCC-CHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 226 NFPKDSIDAVHAGAAIHCWS-SPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 226 ~~~~~~fD~V~~~~vl~h~~-d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
..+.++||+++..+ +. +-.....++.++||+||++++--...
T Consensus 144 ~~~~~tfDfaFvDa----dK~nY~~y~e~~l~Llr~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 144 DGESGTFDFAFVDA----DKDNYSNYYERLLRLLRVGGVIVVDNVLW 186 (237)
T ss_pred cCCCCceeEEEEcc----chHHHHHHHHHHHhhcccccEEEEecccc
Confidence 23468999998653 33 33477889999999999998854333
No 213
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.00033 Score=59.75 Aligned_cols=107 Identities=22% Similarity=0.212 Sum_probs=67.1
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcC-----------CCCCCCCceE
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQE-----------SNFPKDSIDA 234 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~-----------~~~~~~~fD~ 234 (334)
+...++--..++.+|+|+|+..|.|+..+++.. ....|+|+|+.+--.-..-..++.+ ..+....+|+
T Consensus 35 el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~Dv 114 (205)
T COG0293 35 ELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDV 114 (205)
T ss_pred HHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcce
Confidence 333333223457899999999999999998873 3346999998773221111111100 0233455899
Q ss_pred EEeCccc--------cCCCC---HHHHHHHHHHcccCCcEEEEEEeccCC
Q 019861 235 VHAGAAI--------HCWSS---PSTGVAEISRVLRPGGVFVGTTYIVDG 273 (334)
Q Consensus 235 V~~~~vl--------~h~~d---~~~~L~~i~r~LkpgG~lii~~~~~~~ 273 (334)
|++...- .|... -..++.-+..+|+|||.+++-.+-.+.
T Consensus 115 V~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 115 VLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred EEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 9975432 22211 135677788899999999998887653
No 214
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.81 E-value=0.0004 Score=59.83 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=74.1
Q ss_pred EEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC--------------CCCCC-ceEEEeCccccCCC
Q 019861 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN--------------FPKDS-IDAVHAGAAIHCWS 245 (334)
Q Consensus 181 vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~--------------~~~~~-fD~V~~~~vl~h~~ 245 (334)
|.||||-.|++...|.+.+.-..++++|+++..++.|++++..... ++.+. .|+|+...+=-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 6899999999999999998766899999999999999998876431 22222 445444332000
Q ss_pred CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE---eecCc
Q 019861 246 SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC---TRNRG 322 (334)
Q Consensus 246 d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~---~~~g~ 322 (334)
-...+|.+....++....+++. |+ -....++++|.+.||..++. ...+.
T Consensus 79 lI~~ILe~~~~~~~~~~~lILq-P~---------------------------~~~~~LR~~L~~~gf~I~~E~lv~e~~~ 130 (205)
T PF04816_consen 79 LIIEILEAGPEKLSSAKRLILQ-PN---------------------------THAYELRRWLYENGFEIIDEDLVEENGR 130 (205)
T ss_dssp HHHHHHHHTGGGGTT--EEEEE-ES---------------------------S-HHHHHHHHHHTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhhHHHhccCCeEEEe-CC---------------------------CChHHHHHHHHHCCCEEEEeEEEeECCE
Confidence 0123444444444443444442 22 24678999999999998883 34454
Q ss_pred -EEEEEEEcC
Q 019861 323 -FVMFTATKP 331 (334)
Q Consensus 323 -~~~~~a~K~ 331 (334)
+-++.+.+.
T Consensus 131 ~YeIi~~~~~ 140 (205)
T PF04816_consen 131 FYEIIVAERG 140 (205)
T ss_dssp EEEEEEEEES
T ss_pred EEEEEEEEeC
Confidence 445555443
No 215
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.75 E-value=0.00042 Score=57.94 Aligned_cols=135 Identities=21% Similarity=0.180 Sum_probs=87.5
Q ss_pred HcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHH----------HHHHHHHHhcC---------CCCCC
Q 019861 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENM----------LKQCYEFVQQE---------SNFPK 229 (334)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~----------~~~a~~~~~~~---------~~~~~ 229 (334)
+.....+++.+|+|+=.|.|+|++.++.. ++.+.|+++-+.+.. -..+++....+ ...+.
T Consensus 41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~p 120 (238)
T COG4798 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAP 120 (238)
T ss_pred eEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCC
Confidence 44556778999999999999999999887 666788887554431 11111110000 01244
Q ss_pred CCceEEEeCcccc--CCC-----CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHH
Q 019861 230 DSIDAVHAGAAIH--CWS-----SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE 302 (334)
Q Consensus 230 ~~fD~V~~~~vl~--h~~-----d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 302 (334)
+..|++.....-| |.. .-..+-+++.+.|||||++++.+...+...... .....++.+...
T Consensus 121 q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~------------dt~~~~ri~~a~ 188 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS------------DTITLHRIDPAV 188 (238)
T ss_pred CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh------------hhhhhcccChHH
Confidence 5667776532222 111 235788999999999999999888764321111 112446778999
Q ss_pred HHHHHHhCCCcEEE
Q 019861 303 IEDLCRACGLVDFK 316 (334)
Q Consensus 303 l~~ll~~~Gf~~v~ 316 (334)
+.+..+.+||+..-
T Consensus 189 V~a~veaaGFkl~a 202 (238)
T COG4798 189 VIAEVEAAGFKLEA 202 (238)
T ss_pred HHHHHHhhcceeee
Confidence 99999999997654
No 216
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.73 E-value=0.0026 Score=54.75 Aligned_cols=137 Identities=12% Similarity=0.142 Sum_probs=84.1
Q ss_pred cCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEE
Q 019861 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAV 235 (334)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V 235 (334)
+...++.+||-+|.++|....++++- ++.+.|+++++++...+..-...+... .+ -+.+|+|
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~l-v~~VDvI 147 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRML-VEMVDVI 147 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTT-S--EEEE
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcc-cccccEE
Confidence 45667899999999999999999887 557799999999965544432222111 12 2479999
Q ss_pred EeCccccCCCCH-HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861 236 HAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD 314 (334)
Q Consensus 236 ~~~~vl~h~~d~-~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~ 314 (334)
++.-. -++. .-++..+...||+||.++++.-.........+- . .-.+-.+.|++.||+.
T Consensus 148 ~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~-~----------------vf~~e~~~L~~~~~~~ 207 (229)
T PF01269_consen 148 FQDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPE-E----------------VFAEEVKKLKEEGFKP 207 (229)
T ss_dssp EEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHH-H----------------HHHHHHHHHHCTTCEE
T ss_pred EecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHH-H----------------HHHHHHHHHHHcCCCh
Confidence 87643 1333 456777888999999999876543111011110 0 0123345678899999
Q ss_pred EEEeecC----cEEEEEEEc
Q 019861 315 FKCTRNR----GFVMFTATK 330 (334)
Q Consensus 315 v~~~~~g----~~~~~~a~K 330 (334)
.+..... .+.+++++.
T Consensus 208 ~e~i~LePy~~dH~~vv~~y 227 (229)
T PF01269_consen 208 LEQITLEPYERDHAMVVGRY 227 (229)
T ss_dssp EEEEE-TTTSTTEEEEEEEE
T ss_pred heEeccCCCCCCcEEEEEEe
Confidence 9877553 366666654
No 217
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.71 E-value=0.00013 Score=66.12 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=48.8
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhc
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQ 223 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~ 223 (334)
.+.+.+.+.+.++..+||.+||.|..+..+++..+ ...|+|+|.++.+++.+++++..
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 34556666667788999999999999999999864 57999999999999999987744
No 218
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.65 E-value=0.00021 Score=61.55 Aligned_cols=101 Identities=16% Similarity=0.144 Sum_probs=59.0
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------------------CCCCCC
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------------------ESNFPK 229 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------------------~~~~~~ 229 (334)
.+.+.++..++...+|+|||.|....+++........+|||+.+...+.|...... ...|-+
T Consensus 33 ~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 33 KILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 34455666778899999999999887777665445799999999888777643221 011221
Q ss_pred --------CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 230 --------DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 230 --------~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
...|+|+++...- -++....|.++...||+|.+++...+
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKP 159 (205)
T ss_dssp HHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred cHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 2469999987642 12345667888888999888765433
No 219
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00011 Score=58.43 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=43.4
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~ 223 (334)
..+-...+...|+.++|+|||.|.+.....-.+ ...++|+|+++++++.++.+...
T Consensus 38 ~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeE 93 (185)
T KOG3420|consen 38 YTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEE 93 (185)
T ss_pred HHHHhhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHH
Confidence 344455555678999999999999985555544 35899999999999999987654
No 220
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.64 E-value=0.0018 Score=55.98 Aligned_cols=113 Identities=18% Similarity=0.086 Sum_probs=76.5
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHH---HHHhcCC---------CCCC-CC-ceEEEeCccccC
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY---EFVQQES---------NFPK-DS-IDAVHAGAAIHC 243 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~---~~~~~~~---------~~~~-~~-fD~V~~~~vl~h 243 (334)
+.+++|||+|.|.-+.-++-..|..+++-+|....-+...+ ..+.-.. .+.. .. ||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv--- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV--- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence 57999999999999999887778889999998875544444 3333221 1221 23 999999886
Q ss_pred CCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861 244 WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 318 (334)
Q Consensus 244 ~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~ 318 (334)
.+...++.-+...+++||.+++.-... ... -..+.+......|+.+.++.
T Consensus 145 -a~L~~l~e~~~pllk~~g~~~~~k~~~----------------~~~--------e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 145 -ASLNVLLELCLPLLKVGGGFLAYKGLA----------------GKD--------ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred -cchHHHHHHHHHhcccCCcchhhhHHh----------------hhh--------hHHHHHHHHHhhcCcEEEEE
Confidence 445556777888999999876522110 000 13466777788888777744
No 221
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.64 E-value=0.0003 Score=61.91 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=57.6
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCc
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSI 232 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~f 232 (334)
.+.|.......++..|||||.|+|.++..|.+.+. +|+++|+++.|+....+++.+.. ..+...|
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~f 124 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRF 124 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCccc
Confidence 44556666777889999999999999999999987 99999999999999998877543 1223568
Q ss_pred eEEEeC
Q 019861 233 DAVHAG 238 (334)
Q Consensus 233 D~V~~~ 238 (334)
|.++++
T Consensus 125 d~cVsN 130 (315)
T KOG0820|consen 125 DGCVSN 130 (315)
T ss_pred ceeecc
Confidence 888873
No 222
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.63 E-value=0.00012 Score=61.52 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=66.8
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCCCC-------------------CCceEEEeC
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK-------------------DSIDAVHAG 238 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~-------------------~~fD~V~~~ 238 (334)
.-.+.|||||.|.++..|+...|+-.+.|+++--...++.++++.....-+. +-|.---.+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 3579999999999999999999988999999998888888887664431111 111111122
Q ss_pred ccccCCCCH-------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861 239 AAIHCWSSP-------------STGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 239 ~vl~h~~d~-------------~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
-.+..++|| ...+.+..-+|++||.++..+-..
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 223444555 256888899999999999876554
No 223
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00035 Score=61.93 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=50.3
Q ss_pred HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh
Q 019861 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (334)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~ 222 (334)
...+.+.+.....++..|||||+|.|.++..|.+.+. .|+++|+++.+++..++.+.
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcc
Confidence 3456777777777788999999999999999999987 89999999999999998875
No 224
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.61 E-value=0.00038 Score=62.91 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=62.7
Q ss_pred CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCc
Q 019861 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGA 239 (334)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~ 239 (334)
...++.|||+|||+|.++...+.+|. .+|++++. .+|.++|++.++... .+ .++.|+|++--
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-PEk~DviISEP 251 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIEL-PEKVDVIISEP 251 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccC-chhccEEEecc
Confidence 34578999999999999999999984 69999996 568888888766542 12 35789999732
Q ss_pred ---cccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 240 ---AIHCWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 240 ---vl~h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
.|-.-.-.+. .-..++.|+|.|.++=..
T Consensus 252 MG~mL~NERMLEs-Yl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 252 MGYMLVNERMLES-YLHARKWLKPNGKMFPTV 282 (517)
T ss_pred chhhhhhHHHHHH-HHHHHhhcCCCCcccCcc
Confidence 2221111122 223569999999877533
No 225
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.61 E-value=0.0013 Score=60.62 Aligned_cols=99 Identities=21% Similarity=0.289 Sum_probs=77.8
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------C--------CCC-CC
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------N--------FPK-DS 231 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~--------~~~-~~ 231 (334)
..+...... |.+|||+=+|.|.++..++..+.. .|+++|+|+.+++..++++.... + .+. +.
T Consensus 180 ~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~ 256 (341)
T COG2520 180 ARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGV 256 (341)
T ss_pred HHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcccc
Confidence 344555554 889999999999999999999862 49999999999999999876442 0 112 67
Q ss_pred ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
+|-|+|... .+-..++....+.+++||++...+...+
T Consensus 257 aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 257 ADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred CCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 999998864 3445678889999999999998877654
No 226
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.59 E-value=0.00044 Score=62.52 Aligned_cols=93 Identities=19% Similarity=0.191 Sum_probs=66.5
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-------------------CCCCCceEEEe
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-------------------FPKDSIDAVHA 237 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-------------------~~~~~fD~V~~ 237 (334)
.+++|||+=|=+|.++.+++..|. .+|+.+|.|..+++.+++++....- -..++||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 378999999999999999888763 5899999999999999998764430 01468999997
Q ss_pred C---cc---ccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861 238 G---AA---IHCWSSPSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 238 ~---~v---l~h~~d~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
. +. ..-..+...++..+.++|+|||.+++..-.
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3 11 110124457888999999999998876654
No 227
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.0027 Score=53.43 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=77.3
Q ss_pred cHHHHHHHHcccCC--CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------
Q 019861 162 PEKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------- 225 (334)
Q Consensus 162 ~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------- 225 (334)
..+..+.+...+.+ ..+.++||+=+|+|.++.....+|. ..++.+|.+.......++++....
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~ 104 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR 104 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH
Confidence 34455566666654 5789999999999999999999984 699999999999999998865432
Q ss_pred ---CCCC-CCceEEEeCcccc-CCCCHHHHHHH--HHHcccCCcEEEEEEecc
Q 019861 226 ---NFPK-DSIDAVHAGAAIH-CWSSPSTGVAE--ISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 226 ---~~~~-~~fD~V~~~~vl~-h~~d~~~~L~~--i~r~LkpgG~lii~~~~~ 271 (334)
.... +.||+|+..==.+ .+.++...+.. -...|+|+|.+++.....
T Consensus 105 ~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 105 ALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 1122 2499999853322 22233333433 456799999999977653
No 228
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.47 E-value=0.00038 Score=56.36 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=39.6
Q ss_pred CCCCcEEEECCCcCHHHHHHHH-----cCCCCeEEEEeCCHHHHHHHHHHHh
Q 019861 176 VLGGNIIDASCGSGLFSRIFAK-----SGLFSLVVALDYSENMLKQCYEFVQ 222 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~v~giD~s~~~~~~a~~~~~ 222 (334)
.+..+|+|+|||.|+++..++. . +...|+|+|.++..++.+.++..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~ 74 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQ 74 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHH
Confidence 5578999999999999999998 4 56799999999999888887644
No 229
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00044 Score=65.76 Aligned_cols=90 Identities=27% Similarity=0.401 Sum_probs=74.3
Q ss_pred CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCccccCCC
Q 019861 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAIHCWS 245 (334)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl~h~~ 245 (334)
.++|-+|||.-.+...+.+.| +..++-+|+|+..++.......... .|++++||+|+.-..++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 399999999999999999987 4689999999999888776553222 58899999999999888874
Q ss_pred CH----------HHHHHHHHHcccCCcEEEEEEe
Q 019861 246 SP----------STGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 246 d~----------~~~L~~i~r~LkpgG~lii~~~ 269 (334)
.+ ...+.++.++|++||+.+..+.
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 22 2457899999999999887776
No 230
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.0019 Score=61.85 Aligned_cols=60 Identities=25% Similarity=0.331 Sum_probs=52.2
Q ss_pred HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (334)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~ 224 (334)
+.+.+...+++...++.++||+=||.|.|+..+++... +|+|+|+++.+++.|+++.+..
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n 338 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAAN 338 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHc
Confidence 45667777888877788999999999999999998765 9999999999999999987654
No 231
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.43 E-value=0.0035 Score=59.09 Aligned_cols=89 Identities=18% Similarity=0.149 Sum_probs=69.9
Q ss_pred CCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCCC---------------CCCCCceEEEeCccc
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN---------------FPKDSIDAVHAGAAI 241 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~---------------~~~~~fD~V~~~~vl 241 (334)
+.+|||+.||+|..+..++...+ ...|+++|+++..++.++++++.... .....||+|...=
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 45899999999999999988731 25899999999999999988754320 1125799998854
Q ss_pred cCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861 242 HCWSSPSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 242 ~h~~d~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
...|..++..+.+.+++||.+.++--.
T Consensus 123 --fGs~~~fld~al~~~~~~glL~vTaTD 149 (374)
T TIGR00308 123 --FGTPAPFVDSAIQASAERGLLLVTATD 149 (374)
T ss_pred --CCCcHHHHHHHHHhcccCCEEEEEecc
Confidence 245667999999999999999997443
No 232
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=97.43 E-value=0.00057 Score=55.49 Aligned_cols=124 Identities=14% Similarity=0.185 Sum_probs=75.3
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHH-HHHHHHhcCC--------CCCCCCceEEEeCccccCCC---
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK-QCYEFVQQES--------NFPKDSIDAVHAGAAIHCWS--- 245 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~-~a~~~~~~~~--------~~~~~~fD~V~~~~vl~h~~--- 245 (334)
+++.+-+|+..-..-......| ..++..+|.++--++ ..++++.... .--.++||.+.+.+++||+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLGR 80 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGR 80 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhheechhccccccc
Confidence 4678888887554433334444 357888887642211 1111111111 01146799999999999983
Q ss_pred --CH------HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861 246 --SP------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 317 (334)
Q Consensus 246 --d~------~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~ 317 (334)
|| ...+.++.++|||||.+++..|..... ..+ +..+.|....+..++ .||+.+..
T Consensus 81 YGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~---i~f------------NahRiYg~~rL~mm~--~gfe~i~t 143 (177)
T PF03269_consen 81 YGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDA---IQF------------NAHRIYGPIRLAMMF--YGFEWIDT 143 (177)
T ss_pred cCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcc---eEE------------ecceeecHhHHHHHh--CCcEEEee
Confidence 33 367899999999999999999987421 111 122344555555444 67777665
Q ss_pred ee
Q 019861 318 TR 319 (334)
Q Consensus 318 ~~ 319 (334)
.+
T Consensus 144 fs 145 (177)
T PF03269_consen 144 FS 145 (177)
T ss_pred ec
Confidence 43
No 233
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.43 E-value=0.0008 Score=57.24 Aligned_cols=90 Identities=17% Similarity=0.304 Sum_probs=73.3
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------CCCCCCCceEEEeCcc
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SNFPKDSIDAVHAGAA 240 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~~fD~V~~~~v 240 (334)
.+|++||.||-|-|.....+.++-|. +=+-++..+..++..++.--.+ ..++++.||.|.-...
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 46899999999999888888888764 4557899999998888642111 2478899999998877
Q ss_pred ccCCCCHHHHHHHHHHcccCCcEEEE
Q 019861 241 IHCWSSPSTGVAEISRVLRPGGVFVG 266 (334)
Q Consensus 241 l~h~~d~~~~L~~i~r~LkpgG~lii 266 (334)
-+|..|...+-+.+.++|||+|++-.
T Consensus 179 ~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 179 SELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred hhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 78888888899999999999998765
No 234
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.002 Score=60.42 Aligned_cols=106 Identities=25% Similarity=0.291 Sum_probs=78.0
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHHhcCCC----------------CC
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESN----------------FP 228 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~----------------~~ 228 (334)
......+.+.++.+|||+.++.|.=+.++++...+ ..|+++|.++.-++..++++...+- .+
T Consensus 146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~ 225 (355)
T COG0144 146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP 225 (355)
T ss_pred HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc
Confidence 34556678889999999999999888788777542 3579999999999888887664331 11
Q ss_pred C-CCceEEEeC------ccccCCCC----------------HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 229 K-DSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 229 ~-~~fD~V~~~------~vl~h~~d----------------~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
. +.||.|+.. .++.--++ ...+|....+.|||||.|+-++=...
T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 2 259999973 34432222 13689999999999999999887653
No 235
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.39 E-value=0.0026 Score=58.31 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=87.9
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH--Hhc--CCCCC------------------CCCceEE
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQ--ESNFP------------------KDSIDAV 235 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~~--~~~~~------------------~~~fD~V 235 (334)
..++|-+|.|.|..++.+.+.-...+++-+|++|.|++.++.. +.. .+.+. .+.||+|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 4689999999999999998874356999999999999999843 221 11111 3478888
Q ss_pred EeCccccCCCCH----------HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHH
Q 019861 236 HAGAAIHCWSSP----------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 305 (334)
Q Consensus 236 ~~~~vl~h~~d~----------~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ 305 (334)
+.. ++|| ..+-.-+++.|+++|.+++..-..-.. ...++ .+.+
T Consensus 370 IVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~t-------------------p~vfw---~i~a 422 (508)
T COG4262 370 IVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFT-------------------PRVFW---RIDA 422 (508)
T ss_pred EEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccC-------------------Cceee---eehh
Confidence 865 3555 356788899999999999865442110 00111 3556
Q ss_pred HHHhCCCcEEE----EeecCcEEEEEEEcC
Q 019861 306 LCRACGLVDFK----CTRNRGFVMFTATKP 331 (334)
Q Consensus 306 ll~~~Gf~~v~----~~~~g~~~~~~a~K~ 331 (334)
-++++||.+.- +-+.|-|-+..+.+.
T Consensus 423 Tik~AG~~~~Pyhv~VPTFGeWGf~l~~~~ 452 (508)
T COG4262 423 TIKSAGYRVWPYHVHVPTFGEWGFILAAPG 452 (508)
T ss_pred HHHhCcceeeeeEEecCcccccceeecccc
Confidence 78889997755 335677777777664
No 236
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.00071 Score=56.27 Aligned_cols=95 Identities=16% Similarity=0.230 Sum_probs=62.9
Q ss_pred CCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHH-HHH--------------HHHHhcCCCCCCCCceEEEeC
Q 019861 175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENML-KQC--------------YEFVQQESNFPKDSIDAVHAG 238 (334)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~-~~a--------------~~~~~~~~~~~~~~fD~V~~~ 238 (334)
..|+.+|||+||..|.|+....+. +|.+.+.|+|+-.-.. +.+ ++.++ .+|+...|+|++.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e---~lp~r~VdvVlSD 143 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFE---ALPNRPVDVVLSD 143 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHH---hCCCCcccEEEec
Confidence 346899999999999999999887 5888999999743111 000 11111 2467889999986
Q ss_pred ccc--------cCCCCH---HHHHHHHHHcccCCcEEEEEEeccC
Q 019861 239 AAI--------HCWSSP---STGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 239 ~vl--------~h~~d~---~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
..- .|..-. ..+|.-....++|+|.++.-.+..+
T Consensus 144 MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 144 MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 542 221111 1344445567789999999888764
No 237
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.0001 Score=49.17 Aligned_cols=45 Identities=27% Similarity=0.511 Sum_probs=37.8
Q ss_pred CCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccCC
Q 019861 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASG 122 (334)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~ 122 (334)
++.++||.|.++|.... ..+.+.|+.|+..|+.++|++.++.+..
T Consensus 6 LeiLaCP~~kg~L~~~~---------~~~~L~c~~~~~aYpI~dGIPvlL~~ea 50 (60)
T COG2835 6 LEILACPVCKGPLVYDE---------EKQELICPRCKLAYPIRDGIPVLLPDEA 50 (60)
T ss_pred heeeeccCcCCcceEec---------cCCEEEecccCceeecccCccccCchhh
Confidence 46899999999987655 2358999999999999999999987643
No 238
>PRK11827 hypothetical protein; Provisional
Probab=97.36 E-value=9.3e-05 Score=49.86 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=36.5
Q ss_pred CCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccCC
Q 019861 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASG 122 (334)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~ 122 (334)
++.++||.|++++.... ..+.+.|..|+..|+.++|++.++.+..
T Consensus 6 LeILaCP~ckg~L~~~~---------~~~~Lic~~~~laYPI~dgIPVlL~deA 50 (60)
T PRK11827 6 LEIIACPVCNGKLWYNQ---------EKQELICKLDNLAFPLRDGIPVLLETEA 50 (60)
T ss_pred HhheECCCCCCcCeEcC---------CCCeEECCccCeeccccCCccccCHHHh
Confidence 45799999999987643 2256899999999999999999887643
No 239
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.35 E-value=0.0013 Score=62.89 Aligned_cols=112 Identities=19% Similarity=0.243 Sum_probs=74.6
Q ss_pred CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCH----HHHHHHHHH--HhcC----CCCC--CCCceEEEeCccc
Q 019861 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE----NMLKQCYEF--VQQE----SNFP--KDSIDAVHAGAAI 241 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~----~~~~~a~~~--~~~~----~~~~--~~~fD~V~~~~vl 241 (334)
....-..|+|+..|.|.|+.+|.+.. |..+...+ +.+....++ +.-. .+|+ ..+||+|++.+++
T Consensus 362 ~~~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 362 KWGRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred cccceeeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhh
Confidence 33334589999999999999998753 33333222 222222221 1100 1233 5899999999998
Q ss_pred cCCC---CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEE
Q 019861 242 HCWS---SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK 316 (334)
Q Consensus 242 ~h~~---d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~ 316 (334)
.+.. +...+|-|+.|+|+|||.++|.+-.. ..++++.++++..++...
T Consensus 438 s~~~~rC~~~~illEmDRILRP~G~~iiRD~~~---------------------------vl~~v~~i~~~lrW~~~~ 488 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD---------------------------VLEKVKKIAKSLRWEVRI 488 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCCCceEEEeccHH---------------------------HHHHHHHHHHhCcceEEE
Confidence 8776 45789999999999999999955431 245677777777776544
No 240
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.35 E-value=0.0006 Score=63.91 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=45.6
Q ss_pred HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (334)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~ 224 (334)
.+.+.+.+++... +.+|||++||+|.++..+++... +|+|+|+++.+++.++++....
T Consensus 185 ~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~ 242 (353)
T TIGR02143 185 KMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAAN 242 (353)
T ss_pred HHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHc
Confidence 3344555555432 24799999999999999988764 9999999999999999987643
No 241
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.34 E-value=0.00053 Score=55.33 Aligned_cols=45 Identities=24% Similarity=0.224 Sum_probs=40.3
Q ss_pred cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (334)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~ 224 (334)
++||||||.|.++..++..++..+++++|+++.+.+.+++++...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n 45 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN 45 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc
Confidence 489999999999999999987678999999999999999887643
No 242
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.32 E-value=0.00082 Score=56.40 Aligned_cols=104 Identities=17% Similarity=0.132 Sum_probs=73.0
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------CCCCCCceEEE
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------NFPKDSIDAVH 236 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~~~~~~fD~V~ 236 (334)
+.+...-....+++|||+|+|+|.-+...+..|. ..|+..|+.+......+-+.+... ..++..||+|+
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~L 147 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLL 147 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEE
Confidence 3444444455689999999999999999988884 588899999877766665544332 23677899999
Q ss_pred eCccccCCCCHHHHHHHHHHccc-CCcEEEEEEeccC
Q 019861 237 AGAAIHCWSSPSTGVAEISRVLR-PGGVFVGTTYIVD 272 (334)
Q Consensus 237 ~~~vl~h~~d~~~~L~~i~r~Lk-pgG~lii~~~~~~ 272 (334)
...++..-+.-..++. ..+.|+ .|-.+++-+|.+.
T Consensus 148 agDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 148 AGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred eeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 9998775444456666 555555 4555666666553
No 243
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.26 E-value=0.0019 Score=56.59 Aligned_cols=149 Identities=15% Similarity=0.171 Sum_probs=87.8
Q ss_pred CCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------
Q 019861 158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------ 225 (334)
Q Consensus 158 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------ 225 (334)
..+..+...+.+...++. ..+|+|||||---++..+....+...|+|+|++..+++.....+....
T Consensus 88 Rl~~Ld~fY~~if~~~~~--p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~ 165 (251)
T PF07091_consen 88 RLPNLDEFYDEIFGRIPP--PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLS 165 (251)
T ss_dssp CGGGHHHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTT
T ss_pred hhhhHHHHHHHHHhcCCC--CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeec
Confidence 344455666666665544 789999999999998888877767799999999999999887655432
Q ss_pred CCCCCCceEEEeCccccCCCCHH-HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHH
Q 019861 226 NFPKDSIDAVHAGAAIHCWSSPS-TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 304 (334)
Q Consensus 226 ~~~~~~fD~V~~~~vl~h~~d~~-~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~ 304 (334)
..+....|+.++.=+++.+.... ...-++.+.++ .-.++++.|...-. . ....+.. .-...++
T Consensus 166 ~~~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~-g-------R~~gm~~-------~y~~~fe 229 (251)
T PF07091_consen 166 DPPKEPADLALLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPTRSLG-G-------RNKGMEQ-------TYSAWFE 229 (251)
T ss_dssp SHTTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES---------------TTHHH-------CHHHHHH
T ss_pred cCCCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEeccccccc-c-------Ccccccc-------CHHHHHH
Confidence 23467799999998887765332 12122333332 23566677765311 1 0011111 1134677
Q ss_pred HHHHhCCCcEEEEeecCcEEE
Q 019861 305 DLCRACGLVDFKCTRNRGFVM 325 (334)
Q Consensus 305 ~ll~~~Gf~~v~~~~~g~~~~ 325 (334)
.++..-|+. ++....+.=.+
T Consensus 230 ~~~~~~~~~-~~~~~~~~Elv 249 (251)
T PF07091_consen 230 ALAAERGWI-VDRLTFGNELV 249 (251)
T ss_dssp HHCCTTCEE-EEEEEETTEEE
T ss_pred HhcccCCce-eeeeeccccee
Confidence 788888887 45444443343
No 244
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.24 E-value=0.0009 Score=62.98 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=45.9
Q ss_pred HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (334)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~ 224 (334)
.+.+.+..++... +.++||++||+|.++..+++... +|+|+|.++.+++.++++....
T Consensus 194 ~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~ 251 (362)
T PRK05031 194 KMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAAN 251 (362)
T ss_pred HHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHh
Confidence 4455555555432 35799999999999998888765 9999999999999999887543
No 245
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.21 E-value=0.0025 Score=58.52 Aligned_cols=79 Identities=15% Similarity=0.276 Sum_probs=57.1
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH-----HhcC--CCCC-CCCceEEEeCccccCCCCH
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF-----VQQE--SNFP-KDSIDAVHAGAAIHCWSSP 247 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~-----~~~~--~~~~-~~~fD~V~~~~vl~h~~d~ 247 (334)
.++.++||+||++|.|+..+.+.|. .|++||..+-. ...... .... ...+ .+.+|.|+|..+ ..|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~l~-~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv----e~P 282 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGPMA-QSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV----EKP 282 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechhcC-HhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc----cCH
Confidence 4688999999999999999999986 99999965422 111110 0000 0122 567999999876 568
Q ss_pred HHHHHHHHHcccCC
Q 019861 248 STGVAEISRVLRPG 261 (334)
Q Consensus 248 ~~~L~~i~r~Lkpg 261 (334)
..+++-+.+.|..|
T Consensus 283 ~rva~lm~~Wl~~g 296 (357)
T PRK11760 283 ARVAELMAQWLVNG 296 (357)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888899999776
No 246
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.19 E-value=0.0053 Score=55.12 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=54.0
Q ss_pred CCcEEEECCCcCHHHH-HHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeCc
Q 019861 178 GGNIIDASCGSGLFSR-IFAKS-GLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAGA 239 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~-~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~~ 239 (334)
+.+|+=||+|.=-++. .+++. +....++++|+++.+.+.+++...... ...-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 4599999999865544 44433 445689999999999999987665211 11235799998876
Q ss_pred cccCCC-CHHHHHHHHHHcccCCcEEEEEEec
Q 019861 240 AIHCWS-SPSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 240 vl~h~~-d~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
...--. +-..+|..+.+.++||..++.-...
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 554222 5578999999999999999886443
No 247
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0039 Score=54.12 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=83.4
Q ss_pred CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----CC--------CCCCCCceEEEeCccc
Q 019861 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----ES--------NFPKDSIDAVHAGAAI 241 (334)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----~~--------~~~~~~fD~V~~~~vl 241 (334)
..++..+||||+.||.|+..+.+.|. .+|+++|..-..+..--+.-.. .. .+ .+..|++++.-++
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~-~~~~d~~v~DvSF 154 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF-TEKPDLIVIDVSF 154 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc-ccCCCeEEEEeeh
Confidence 34678999999999999999999984 6999999987666543322110 00 12 2367899987665
Q ss_pred cCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhh----hcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861 242 HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ----ISGSYTFLSEREIEDLCRACGLVDFKC 317 (334)
Q Consensus 242 ~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~t~~~l~~ll~~~Gf~~v~~ 317 (334)
. ....+|-.+..+|+++|.++...-- -+......... .....+.--...+.+++++.||++...
T Consensus 155 I---SL~~iLp~l~~l~~~~~~~v~LvKP---------QFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 155 I---SLKLILPALLLLLKDGGDLVLLVKP---------QFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred h---hHHHHHHHHHHhcCCCceEEEEecc---------hhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 5 3456788999999999876663321 11111111110 000112224568889999999988774
Q ss_pred e
Q 019861 318 T 318 (334)
Q Consensus 318 ~ 318 (334)
.
T Consensus 223 ~ 223 (245)
T COG1189 223 I 223 (245)
T ss_pred E
Confidence 3
No 248
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.044 Score=46.49 Aligned_cols=136 Identities=11% Similarity=0.105 Sum_probs=88.2
Q ss_pred cCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------CCC------CCCceEEEe
Q 019861 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFP------KDSIDAVHA 237 (334)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~------~~~fD~V~~ 237 (334)
++..++.+||=+|..+|....++++--..+.++++++++......-....... ..| -+..|+|..
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE
Confidence 45667899999999999999999987556789999999977665544333221 122 135788775
Q ss_pred CccccCCCCHH---HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861 238 GAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD 314 (334)
Q Consensus 238 ~~vl~h~~d~~---~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~ 314 (334)
. +..|. -+..++...||+||.++++.-.........+- . --++-.+.|++.||++
T Consensus 152 D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~-~----------------vf~~ev~kL~~~~f~i 209 (231)
T COG1889 152 D-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPE-E----------------VFKDEVEKLEEGGFEI 209 (231)
T ss_pred e-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHH-H----------------HHHHHHHHHHhcCcee
Confidence 4 33443 45677899999999777766544321111111 0 0112335678899999
Q ss_pred EEEeecC----cEEEEEEEc
Q 019861 315 FKCTRNR----GFVMFTATK 330 (334)
Q Consensus 315 v~~~~~g----~~~~~~a~K 330 (334)
.+..... -+.++++++
T Consensus 210 ~e~~~LePye~DH~~i~~~~ 229 (231)
T COG1889 210 LEVVDLEPYEKDHALIVAKY 229 (231)
T ss_pred eEEeccCCcccceEEEEEee
Confidence 9877653 356666654
No 249
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.13 E-value=0.0088 Score=56.26 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=55.6
Q ss_pred CCCCCCceEEEeCccccCCCC-H-------------------------------------HHHHHHHHHcccCCcEEEEE
Q 019861 226 NFPKDSIDAVHAGAAIHCWSS-P-------------------------------------STGVAEISRVLRPGGVFVGT 267 (334)
Q Consensus 226 ~~~~~~fD~V~~~~vl~h~~d-~-------------------------------------~~~L~~i~r~LkpgG~lii~ 267 (334)
-||.++.+++++...||++.. | ..+|+.=.+-|.|||++++.
T Consensus 157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 378999999999999998862 1 13455556678999999999
Q ss_pred EeccCCCCCc------hHH---HHHHHHHh-----------hhhcCccCCCCHHHHHHHHHhCCC
Q 019861 268 TYIVDGPFNL------IPF---SRLLRQNM-----------MQISGSYTFLSEREIEDLCRACGL 312 (334)
Q Consensus 268 ~~~~~~~~~~------~~~---~~~~~~~~-----------~~~~~~~~~~t~~~l~~ll~~~Gf 312 (334)
...+.+.... ..| +...+..+ ..+.-...+.+.+++++++++.|.
T Consensus 237 ~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gs 301 (386)
T PLN02668 237 CLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGS 301 (386)
T ss_pred EecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCC
Confidence 8887532111 111 11111111 011123356789999999999884
No 250
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.06 E-value=0.012 Score=54.61 Aligned_cols=138 Identities=22% Similarity=0.190 Sum_probs=73.4
Q ss_pred CCCcEEEECCCcCHHHHHHHHc------------C----CCCeEEEEeCCHHHHHHHHHH-------HhcC---------
Q 019861 177 LGGNIIDASCGSGLFSRIFAKS------------G----LFSLVVALDYSENMLKQCYEF-------VQQE--------- 224 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~------------~----~~~~v~giD~s~~~~~~a~~~-------~~~~--------- 224 (334)
..-+|+|+||..|..+..+... + +..+|+--|+-.+--...-+. ....
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 3569999999999887666432 1 224677778654322221111 1111
Q ss_pred -----CCCCCCCceEEEeCccccCCCC-H--------------------------------------HHHHHHHHHcccC
Q 019861 225 -----SNFPKDSIDAVHAGAAIHCWSS-P--------------------------------------STGVAEISRVLRP 260 (334)
Q Consensus 225 -----~~~~~~~fD~V~~~~vl~h~~d-~--------------------------------------~~~L~~i~r~Lkp 260 (334)
.-+|+++.|+++++..||++.. | ..+|+.=++-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 1388999999999999998752 0 1345555667889
Q ss_pred CcEEEEEEeccCCCCC-------chHHHHHHHHHhhh-----------hcCccCCCCHHHHHHHHHhCC-CcE
Q 019861 261 GGVFVGTTYIVDGPFN-------LIPFSRLLRQNMMQ-----------ISGSYTFLSEREIEDLCRACG-LVD 314 (334)
Q Consensus 261 gG~lii~~~~~~~~~~-------~~~~~~~~~~~~~~-----------~~~~~~~~t~~~l~~ll~~~G-f~~ 314 (334)
||++++..+..+.... ....+...+..+.. +.-...+.+.+++++.+++.| |++
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I 248 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEI 248 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEE
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEE
Confidence 9999999998876211 11222222222211 111235678999999999987 443
No 251
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.04 E-value=0.0022 Score=57.63 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=50.0
Q ss_pred HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh
Q 019861 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (334)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~ 222 (334)
....+.+.+.+...++..|||||+|.|.++..+.+.+. +++++|+++.+.+..++.+.
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhh
Confidence 34456677777776789999999999999999999985 99999999999999998765
No 252
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.03 E-value=0.0056 Score=62.66 Aligned_cols=110 Identities=14% Similarity=0.033 Sum_probs=68.8
Q ss_pred cHHHHHHHHcccCC-CCCCcEEEECCCcCHHHHHHHHcC-----------------------------------------
Q 019861 162 PEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSG----------------------------------------- 199 (334)
Q Consensus 162 ~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~----------------------------------------- 199 (334)
.+.++..++...+. .++..++|.+||+|.++...+...
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 34445555554443 457899999999999987775420
Q ss_pred -CCCeEEEEeCCHHHHHHHHHHHhcCC---------------C--CCCCCceEEEeCccc-cCCC---CHHHHHHHH---
Q 019861 200 -LFSLVVALDYSENMLKQCYEFVQQES---------------N--FPKDSIDAVHAGAAI-HCWS---SPSTGVAEI--- 254 (334)
Q Consensus 200 -~~~~v~giD~s~~~~~~a~~~~~~~~---------------~--~~~~~fD~V~~~~vl-~h~~---d~~~~L~~i--- 254 (334)
...+++|+|+++.+++.|++++...+ + ...++||+|+++==. +-+. +...+.+++
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence 01268999999999999999876432 1 112469999997211 1222 222333333
Q ss_pred HHcccCCcEEEEEEecc
Q 019861 255 SRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 255 ~r~LkpgG~lii~~~~~ 271 (334)
.+.+.+|+.+++.++..
T Consensus 334 lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 334 LKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHhCCCCeEEEEeCCH
Confidence 33334888888877654
No 253
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.01 E-value=0.0054 Score=55.68 Aligned_cols=104 Identities=23% Similarity=0.235 Sum_probs=77.6
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCCC----------------CCCC
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN----------------FPKD 230 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~----------------~~~~ 230 (334)
.....+.+.++.+|||+.+|.|.=+..+++... .+.+++.|++..-+...++++...+. ....
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~ 155 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPES 155 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTT
T ss_pred cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccccc
Confidence 344456777889999999999998888877743 57999999999999988887665431 1234
Q ss_pred CceEEEeC------ccccCCCCH----------------HHHHHHHHHcc----cCCcEEEEEEecc
Q 019861 231 SIDAVHAG------AAIHCWSSP----------------STGVAEISRVL----RPGGVFVGTTYIV 271 (334)
Q Consensus 231 ~fD~V~~~------~vl~h~~d~----------------~~~L~~i~r~L----kpgG~lii~~~~~ 271 (334)
.||.|+.. .++..-++. ..+|+.+.+.+ +|||+++-++=..
T Consensus 156 ~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 156 KFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp TEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred ccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 69999973 334433331 36799999999 9999999877653
No 254
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.92 E-value=0.0022 Score=60.17 Aligned_cols=59 Identities=27% Similarity=0.427 Sum_probs=47.5
Q ss_pred HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (334)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~ 224 (334)
+.+.+.+.++++..++ .|||+=||.|.++..+++... +|+|+|.++.+++.|+++....
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N 241 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLN 241 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHc
Confidence 3556677777876655 899999999999999999876 9999999999999999887653
No 255
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0037 Score=57.03 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=70.3
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHhcCC----------------CCC-
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQES----------------NFP- 228 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~----------------~~~- 228 (334)
+.+..........+|||+|.|.|.-+.++..-.|. ..++-++.|+..-+.......... +++
T Consensus 103 ~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 103 DELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred HHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence 34444445556788999999999888777776653 246667777765555443322110 122
Q ss_pred CCCceEEEeCccccCCCCHH---HHHHHHHHcccCCcEEEEEEeccC
Q 019861 229 KDSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 229 ~~~fD~V~~~~vl~h~~d~~---~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
.+.|++|+..+-|-|..++. ..++.+..++.|||.++|.++...
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 34567777666666655442 478899999999999999998753
No 256
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.79 E-value=0.0093 Score=54.38 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=49.8
Q ss_pred HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (334)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~ 223 (334)
+.+.+.+.+...+++.++|.-+|.|..+..+.+..+.+.++|+|.++.+++.+++++..
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 34566667777778899999999999999999875457999999999999999988754
No 257
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.78 E-value=0.074 Score=45.76 Aligned_cols=119 Identities=14% Similarity=0.083 Sum_probs=81.9
Q ss_pred HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCC-CC
Q 019861 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFP-KD 230 (334)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~-~~ 230 (334)
...+..+++. +.++.||||-.|++..+|.+.++...+++.|+++..++.|.+++.... ++. ++
T Consensus 7 L~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d 84 (226)
T COG2384 7 LTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELED 84 (226)
T ss_pred HHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccC
Confidence 3455666655 556999999999999999999988899999999999999998877543 122 33
Q ss_pred CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC
Q 019861 231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 310 (334)
Q Consensus 231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~ 310 (334)
.+|+|+...+=- .-...+|++-.+.|+.--++++. |+ -...+++++|...
T Consensus 85 ~~d~ivIAGMGG--~lI~~ILee~~~~l~~~~rlILQ-Pn---------------------------~~~~~LR~~L~~~ 134 (226)
T COG2384 85 EIDVIVIAGMGG--TLIREILEEGKEKLKGVERLILQ-PN---------------------------IHTYELREWLSAN 134 (226)
T ss_pred CcCEEEEeCCcH--HHHHHHHHHhhhhhcCcceEEEC-CC---------------------------CCHHHHHHHHHhC
Confidence 677777544200 01134555555555533334431 11 1466899999999
Q ss_pred CCcEEE
Q 019861 311 GLVDFK 316 (334)
Q Consensus 311 Gf~~v~ 316 (334)
+|..+.
T Consensus 135 ~~~I~~ 140 (226)
T COG2384 135 SYEIKA 140 (226)
T ss_pred Cceeee
Confidence 998876
No 258
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.0051 Score=58.95 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=50.6
Q ss_pred HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (334)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~ 224 (334)
+.+...+.+++....+..+||+-||+|.++..+++... .|+|+++++..++.|+.+....
T Consensus 369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~N 428 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQIN 428 (534)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhc
Confidence 44456677777777788999999999999999998765 9999999999999999876544
No 259
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=96.43 E-value=0.0014 Score=45.86 Aligned_cols=47 Identities=30% Similarity=0.560 Sum_probs=30.2
Q ss_pred cCCCceeCCCCCCCccccCCC-------------------CcccccccCCcccccccccccccccC
Q 019861 67 TSKNVLACPICYKPLTWIGDS-------------------SLSIESAAGSSLQCNTCKKTYSGVGT 113 (334)
Q Consensus 67 ~~~~~l~CPiC~~~l~~~~~~-------------------~~~~~~~~~~~~~C~~C~~~~~~~~~ 113 (334)
...++|+||.|+++|.+..-. ..-...+..+.+.|++|+..|+..+|
T Consensus 3 ~llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG 68 (68)
T PF03966_consen 3 LLLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG 68 (68)
T ss_dssp GGCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred hHHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence 356789999999988211000 00002346689999999999998764
No 260
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.30 E-value=0.0091 Score=49.33 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=36.6
Q ss_pred cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (334)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~ 224 (334)
.|+|+.||.|..+.++++.+. +|+++|+++..++.++.+..--
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vY 44 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVY 44 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHT
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHc
Confidence 699999999999999999976 9999999999999999886643
No 261
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.92 E-value=0.0021 Score=48.99 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=44.5
Q ss_pred CceEEEeCccccCC--C--C--HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHH
Q 019861 231 SIDAVHAGAAIHCW--S--S--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 304 (334)
Q Consensus 231 ~fD~V~~~~vl~h~--~--d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~ 304 (334)
.||+|+|..|.-++ . | ...+++.+++.|+|||.+++......+..............+.. . -+.++++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~----i-~lrP~~F~ 75 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKS----I-KLRPDQFE 75 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH---------GGGHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhc----e-EEChHHHH
Confidence 48999998885433 2 2 24789999999999999999766543221111112222222222 1 14566788
Q ss_pred HHHHh--CCCcEEEEe
Q 019861 305 DLCRA--CGLVDFKCT 318 (334)
Q Consensus 305 ~ll~~--~Gf~~v~~~ 318 (334)
+.|.+ .||..++..
T Consensus 76 ~~L~~~evGF~~~e~~ 91 (110)
T PF06859_consen 76 DYLLEPEVGFSSVEEL 91 (110)
T ss_dssp HHHTSTTT---EEEEE
T ss_pred HHHHhcccceEEEEEc
Confidence 88877 699887743
No 262
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.91 E-value=0.012 Score=49.16 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=61.4
Q ss_pred CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEEEeCcc--ccCC
Q 019861 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAVHAGAA--IHCW 244 (334)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V~~~~v--l~h~ 244 (334)
..+.|+|.|+|-++...+.+.. +|++++.++.....|.+++.-.+ .+.-...|+|+|-.. .--.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 6899999999999988888765 99999999999999998853221 111245677877432 1111
Q ss_pred CCHHHHHHHHHHcccCCcEEEE
Q 019861 245 SSPSTGVAEISRVLRPGGVFVG 266 (334)
Q Consensus 245 ~d~~~~L~~i~r~LkpgG~lii 266 (334)
.....++..+.+.|+-++.++=
T Consensus 112 E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred ccccHHHHHHHHHhhcCCcccc
Confidence 1234678888889999887764
No 263
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.83 E-value=0.043 Score=51.25 Aligned_cols=106 Identities=14% Similarity=0.070 Sum_probs=70.2
Q ss_pred HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC--------------------------------C-------e
Q 019861 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------S-------L 203 (334)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------~-------~ 203 (334)
+.++..+..+.+..++..++|--||+|.++...+..+.+ . .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 444555666666666789999999999998888766531 1 2
Q ss_pred EEEEeCCHHHHHHHHHHHhcCC-------------CCCC--CCceEEEeCc--cccCCCCH-------HHHHHHHHHccc
Q 019861 204 VVALDYSENMLKQCYEFVQQES-------------NFPK--DSIDAVHAGA--AIHCWSSP-------STGVAEISRVLR 259 (334)
Q Consensus 204 v~giD~s~~~~~~a~~~~~~~~-------------~~~~--~~fD~V~~~~--vl~h~~d~-------~~~L~~i~r~Lk 259 (334)
++|+|+++.+++.|+.+....+ .+.. +.+|+|+++= ... +.+. ..+.+.+++.++
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhc
Confidence 7799999999999999876543 1222 5788988862 111 1111 234455666666
Q ss_pred CCcEEEEEEe
Q 019861 260 PGGVFVGTTY 269 (334)
Q Consensus 260 pgG~lii~~~ 269 (334)
..+..++++.
T Consensus 336 ~ws~~v~tt~ 345 (381)
T COG0116 336 GWSRYVFTTS 345 (381)
T ss_pred CCceEEEEcc
Confidence 6666666544
No 264
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.83 E-value=0.14 Score=48.05 Aligned_cols=90 Identities=24% Similarity=0.287 Sum_probs=65.4
Q ss_pred CCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC--------------CC-CCCceEEEeCcc
Q 019861 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN--------------FP-KDSIDAVHAGAA 240 (334)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~--------------~~-~~~fD~V~~~~v 240 (334)
++.+|+=+|||. |.++..+++......++.+|.++.-++.|++....... .. ...+|+|+-.-.
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 345999999998 77766677665457999999999999999985543311 01 125888886544
Q ss_pred ccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
. ..++..+.+++++||.+++.-....
T Consensus 248 -----~-~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 248 -----S-PPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred -----C-HHHHHHHHHHhcCCCEEEEEeccCC
Confidence 2 2368899999999999888666544
No 265
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.79 E-value=0.015 Score=44.03 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=28.3
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCC
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s 210 (334)
.+....+|||||+|.+...|...|. .-.|+|.-
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R 89 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR 89 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence 3456899999999999999999987 78899963
No 266
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.73 E-value=0.12 Score=50.77 Aligned_cols=132 Identities=21% Similarity=0.138 Sum_probs=90.4
Q ss_pred chhHHHHHHhHHHhhH---h--cCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC----CCeEEEEeCC
Q 019861 140 PFMSFIYERGWRQNFV---W--GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL----FSLVVALDYS 210 (334)
Q Consensus 140 ~~~~~~~~~~w~~~~~---~--~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~giD~s 210 (334)
+.+...|+...++... . +.+.-|....+.+.+.+.+.+..+|+|..||+|.++....+... ...++|.|++
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~ 223 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN 223 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence 4455555544343222 1 55778889999999999877778999999999998777665421 2579999999
Q ss_pred HHHHHHHHHHHhcCC---------------C-C----CCCCceEEEeCccc---c-------CCC--------------C
Q 019861 211 ENMLKQCYEFVQQES---------------N-F----PKDSIDAVHAGAAI---H-------CWS--------------S 246 (334)
Q Consensus 211 ~~~~~~a~~~~~~~~---------------~-~----~~~~fD~V~~~~vl---~-------h~~--------------d 246 (334)
+.....++.++--++ + . ..+.||+|+++-=+ . +.. .
T Consensus 224 ~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (489)
T COG0286 224 DTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNS 303 (489)
T ss_pred HHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCc
Confidence 999998887533111 1 1 23679999875211 1 110 0
Q ss_pred H-HHHHHHHHHcccCCcEEEEEEecc
Q 019861 247 P-STGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 247 ~-~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
. .++++.+...|+|||+..+..+..
T Consensus 304 ~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 304 ADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred hHHHHHHHHHHhcCCCceEEEEecCC
Confidence 1 478999999999999777776654
No 267
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.059 Score=43.31 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=72.4
Q ss_pred CCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------
Q 019861 158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------------- 224 (334)
Q Consensus 158 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------------- 224 (334)
..+...+..+.++.++...+.++.+|+|+|.|....+.++.+. ...+|+++++-.+.+++-..-..
T Consensus 53 YVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~-~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdl 131 (199)
T KOG4058|consen 53 YVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL-RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDL 131 (199)
T ss_pred ccCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCC-CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 3444566677777888777778999999999999999988872 47899999999888876432211
Q ss_pred CCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861 225 SNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 225 ~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
..+.-..|..|+.+.+-.-++|.+ .++..-|..+..++..-+-
T Consensus 132 wK~dl~dy~~vviFgaes~m~dLe---~KL~~E~p~nt~vvacRFP 174 (199)
T KOG4058|consen 132 WKVDLRDYRNVVIFGAESVMPDLE---DKLRTELPANTRVVACRFP 174 (199)
T ss_pred hhccccccceEEEeehHHHHhhhH---HHHHhhCcCCCeEEEEecC
Confidence 123334556666555433344432 3455567777777664443
No 268
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.70 E-value=0.0029 Score=48.24 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=32.2
Q ss_pred EEECCCcCHHHHHHHHcCCC---CeEEEEeCCHH---HHHHHHHH-HhcC-----C-------CCCCCCceEEEeCcccc
Q 019861 182 IDASCGSGLFSRIFAKSGLF---SLVVALDYSEN---MLKQCYEF-VQQE-----S-------NFPKDSIDAVHAGAAIH 242 (334)
Q Consensus 182 LDiGcG~G~~~~~l~~~~~~---~~v~giD~s~~---~~~~a~~~-~~~~-----~-------~~~~~~fD~V~~~~vl~ 242 (334)
||||+..|..+..+++.... .+++++|+.+. ..+..++. +... . .++.+++|+|+.... |
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-H 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-C
Confidence 68999999888777765322 37999999984 33333321 1110 0 122478999998752 1
Q ss_pred CCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 243 CWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 243 h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
..+.....++.+.+.|+|||++++-+
T Consensus 80 ~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11233466888999999999998753
No 269
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.70 E-value=0.024 Score=51.75 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=49.9
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCCCCCCceEEEeCc
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHAGA 239 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~fD~V~~~~ 239 (334)
+.+.+.+.+.+++.+||.--|.|..+..+.+..+.+.++|+|.++.+++.+++++... ++.|.++...+
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F 78 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNF 78 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-G
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccH
Confidence 4555666677889999999999999999999877789999999999999998766532 46677777664
No 270
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.70 E-value=0.066 Score=47.29 Aligned_cols=94 Identities=17% Similarity=0.080 Sum_probs=65.1
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHH--HHHH----HHhc---CC-------------CCCCCC-ceE
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK--QCYE----FVQQ---ES-------------NFPKDS-IDA 234 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~--~a~~----~~~~---~~-------------~~~~~~-fD~ 234 (334)
..+|||+|+|+|.-+..++... ..+|.-.|+...... ..+. .... .. .+.... +|+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh-cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 5679999999996666666643 358888886543222 2211 1111 10 011233 999
Q ss_pred EEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 235 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 235 V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
|++..++.+-..+..++.-++..|..+|.+++.++.++
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 99999999988899999999999999998888887764
No 271
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=95.68 E-value=0.0059 Score=37.13 Aligned_cols=36 Identities=22% Similarity=0.610 Sum_probs=24.7
Q ss_pred CceeCCCCCCCccccCCCCcccccccCCcccccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (334)
+...||.|+........ .-......++|+.|+++|.
T Consensus 1 M~i~CP~C~~~f~v~~~----~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 1 MIITCPNCQTRFRVPDD----KLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred CEEECCCCCceEEcCHH----HcccCCcEEECCCCCcEee
Confidence 35789999997655431 1112346899999999874
No 272
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.60 E-value=0.028 Score=51.02 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=37.7
Q ss_pred CCcEEEECCCcCHHHHHH--HHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC---------------------CCCCCceE
Q 019861 178 GGNIIDASCGSGLFSRIF--AKSGLFSLVVALDYSENMLKQCYEFVQQESN---------------------FPKDSIDA 234 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l--~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~---------------------~~~~~fD~ 234 (334)
.-++||||+|....-..| ...++ +++|+|+++..++.|++++..... .+++.||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W--~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW--SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC--eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 358999999998553333 33355 999999999999999998775510 12357999
Q ss_pred EEeCcccc
Q 019861 235 VHAGAAIH 242 (334)
Q Consensus 235 V~~~~vl~ 242 (334)
.+|+==++
T Consensus 181 tmCNPPFy 188 (299)
T PF05971_consen 181 TMCNPPFY 188 (299)
T ss_dssp EEE-----
T ss_pred EecCCccc
Confidence 99975444
No 273
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.60 E-value=0.1 Score=48.22 Aligned_cols=89 Identities=20% Similarity=0.204 Sum_probs=63.5
Q ss_pred CCCCCCcEEEECCC-cCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------CCCC--CCCceEEEeCccccC
Q 019861 174 KPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNFP--KDSIDAVHAGAAIHC 243 (334)
Q Consensus 174 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~~~--~~~fD~V~~~~vl~h 243 (334)
+..++.+|+=+|+| -|..+.++++.- ..+|+++|.+++-.+.|++.-... ...+ .+.||+|+..-. .
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~- 239 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P- 239 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h-
Confidence 45678999999988 245666777743 269999999999999998753221 1111 123898887754 3
Q ss_pred CCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861 244 WSSPSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 244 ~~d~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
..+....+.|++||.+++.-..
T Consensus 240 -----~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 240 -----ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----hhHHHHHHHHhcCCEEEEECCC
Confidence 3478888999999999987665
No 274
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=95.34 E-value=0.038 Score=52.51 Aligned_cols=106 Identities=17% Similarity=0.016 Sum_probs=70.9
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CC
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQES-----------------NF 227 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~ 227 (334)
..+...-.......++|+|.|.|.-...+... .-...++.||.+..|.......+.... |.
T Consensus 190 ~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi 269 (491)
T KOG2539|consen 190 KEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPI 269 (491)
T ss_pred HHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCC
Confidence 33433344445678999998877543333322 223478999999999998887655410 22
Q ss_pred C-CCCceEEEeCccccCCCCHH---HHHHH-HHHcccCCcEEEEEEeccC
Q 019861 228 P-KDSIDAVHAGAAIHCWSSPS---TGVAE-ISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 228 ~-~~~fD~V~~~~vl~h~~d~~---~~L~~-i~r~LkpgG~lii~~~~~~ 272 (334)
+ ...||+|++.+.++++.++. .+.++ .++..++||.+++......
T Consensus 270 ~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 270 DIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred CcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 2 34599999999999998764 33344 4556788999998877653
No 275
>PRK11524 putative methyltransferase; Provisional
Probab=95.31 E-value=0.061 Score=48.88 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=49.6
Q ss_pred cHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (334)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~ 223 (334)
|.++.+.+..... .+|..|||-=+|+|..+.+..+.+. +++|+|++++..+.|++++..
T Consensus 194 P~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence 4566666665554 3588999999999999999999887 999999999999999999764
No 276
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.07 E-value=0.039 Score=47.35 Aligned_cols=60 Identities=27% Similarity=0.298 Sum_probs=46.9
Q ss_pred cHHHHHHHHcccCC-CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861 162 PEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (334)
Q Consensus 162 ~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~ 223 (334)
++.....++..... .....|+|.-||.|.....++..++ .|+++|+++.-+..|+.+++-
T Consensus 78 pe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaei 138 (263)
T KOG2730|consen 78 PEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEV 138 (263)
T ss_pred cHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhcccee
Confidence 44445555544321 1456999999999999999999998 999999999999999987654
No 277
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.02 E-value=0.068 Score=46.25 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=43.9
Q ss_pred CCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH
Q 019861 159 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (334)
Q Consensus 159 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~ 219 (334)
...|.++.+.+.+.... ++..|||.=||+|..+.+....+. +++|+|+++...+.|++
T Consensus 174 ~~kP~~l~~~lI~~~t~-~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 174 TQKPVELIERLIKASTN-PGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp T-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhhhc-cceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence 34456777777766543 488999999999999999999987 99999999999998864
No 278
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.00 E-value=0.011 Score=41.55 Aligned_cols=40 Identities=25% Similarity=0.413 Sum_probs=29.2
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDM 117 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~ 117 (334)
++-||+|+-.+......+ .++-.|+.|+-++..+...-.+
T Consensus 1 ~llCP~C~v~l~~~~rs~-------vEiD~CPrCrGVWLDrGELdKl 40 (88)
T COG3809 1 MLLCPICGVELVMSVRSG-------VEIDYCPRCRGVWLDRGELDKL 40 (88)
T ss_pred CcccCcCCceeeeeeecC-------ceeeeCCccccEeecchhHHHH
Confidence 367999999886655332 2688999999999887544333
No 279
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.98 E-value=1 Score=40.32 Aligned_cols=147 Identities=9% Similarity=-0.053 Sum_probs=82.9
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------------
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------------- 225 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------------- 225 (334)
.+.+.+... ...|+.+|||-=.....+.. .....++=+|. ++.++.-++.+....
T Consensus 73 ~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L 149 (260)
T TIGR00027 73 FLLAAVAAG-IRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAAL 149 (260)
T ss_pred HHHHHHhcC-CcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHH
Confidence 334444432 34799999997655544432 22234555553 445554444444211
Q ss_pred ---CCCCCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHh--hhhcCccCCC
Q 019861 226 ---NFPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM--MQISGSYTFL 298 (334)
Q Consensus 226 ---~~~~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 298 (334)
.+..+.--++++-.++.+++.. ..+|+.+.+...||+.+++.....-................ .........+
T Consensus 150 ~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (260)
T TIGR00027 150 AAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGI 229 (260)
T ss_pred HhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCC
Confidence 1222344577778888888754 47899999888899998886655311101101111111111 1112234457
Q ss_pred CHHHHHHHHHhCCCcEEEE
Q 019861 299 SEREIEDLCRACGLVDFKC 317 (334)
Q Consensus 299 t~~~l~~ll~~~Gf~~v~~ 317 (334)
+.+++.++|+..||++...
T Consensus 230 ~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 230 DRADVAEWLAERGWRASEH 248 (260)
T ss_pred ChhhHHHHHHHCCCeeecC
Confidence 8999999999999998764
No 280
>PRK13699 putative methylase; Provisional
Probab=94.74 E-value=0.13 Score=45.12 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=49.6
Q ss_pred CCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861 160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (334)
Q Consensus 160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~ 223 (334)
..|.++.+.+..... .++..|||.=||+|..+.+..+.+. +++|+|+++...+.+.+++..
T Consensus 147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHH
Confidence 345666666665444 3588999999999999999998877 999999999999999887654
No 281
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.71 E-value=0.33 Score=45.98 Aligned_cols=96 Identities=19% Similarity=0.198 Sum_probs=66.1
Q ss_pred CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----CC---------CC-CCCCceEEEe
Q 019861 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----ES---------NF-PKDSIDAVHA 237 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----~~---------~~-~~~~fD~V~~ 237 (334)
...++.+||.+|+|. |..+..+++......++++|.++...+.+++.... .. .+ ....+|+|+-
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 445678999999987 77877777775323699999999988888765111 00 01 1236898887
Q ss_pred Ccc-----------ccCC----CCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 238 GAA-----------IHCW----SSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 238 ~~v-----------l~h~----~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
.-. +.|. .++...+.++.+.|+++|.+++...
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 431 1122 4566789999999999999988653
No 282
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=94.70 E-value=0.018 Score=34.73 Aligned_cols=35 Identities=20% Similarity=0.660 Sum_probs=23.9
Q ss_pred CceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
+.+.||.|+........ .. ......++|+.|+++|
T Consensus 1 M~i~Cp~C~~~y~i~d~---~i-p~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 1 MIITCPNCQAKYEIDDE---KI-PPKGRKVRCSKCGHVF 35 (36)
T ss_pred CEEECCCCCCEEeCCHH---HC-CCCCcEEECCCCCCEe
Confidence 35789999997655431 11 1233579999999876
No 283
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.54 E-value=0.16 Score=40.84 Aligned_cols=69 Identities=20% Similarity=0.341 Sum_probs=45.7
Q ss_pred eEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCceEEEeCcc-cc-----CCCCH---HHHHHHHHH
Q 019861 203 LVVALDYSENMLKQCYEFVQQES-----------------NFPKDSIDAVHAGAA-IH-----CWSSP---STGVAEISR 256 (334)
Q Consensus 203 ~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD~V~~~~v-l~-----h~~d~---~~~L~~i~r 256 (334)
+|+|+|+-+.+++..++++.... -.+.+++|+|+.+.. |- ....+ ..+|+.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 58999999999999999887653 123358999887632 11 11223 368899999
Q ss_pred cccCCcEEEEEEecc
Q 019861 257 VLRPGGVFVGTTYIV 271 (334)
Q Consensus 257 ~LkpgG~lii~~~~~ 271 (334)
.|+|||.+.+.....
T Consensus 81 lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 81 LLKPGGIITIVVYPG 95 (140)
T ss_dssp HEEEEEEEEEEE--S
T ss_pred hhccCCEEEEEEeCC
Confidence 999999998877654
No 284
>PRK00420 hypothetical protein; Validated
Probab=94.41 E-value=0.022 Score=43.70 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=23.3
Q ss_pred eeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (334)
-.||.||.++...- .+..+|+.||..+...
T Consensus 24 ~~CP~Cg~pLf~lk----------~g~~~Cp~Cg~~~~v~ 53 (112)
T PRK00420 24 KHCPVCGLPLFELK----------DGEVVCPVHGKVYIVK 53 (112)
T ss_pred CCCCCCCCcceecC----------CCceECCCCCCeeeec
Confidence 57999999988622 1679999999877554
No 285
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.19 E-value=0.23 Score=46.78 Aligned_cols=100 Identities=24% Similarity=0.261 Sum_probs=68.7
Q ss_pred ccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCC----CCCceE
Q 019861 172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES------------NFP----KDSIDA 234 (334)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~----~~~fD~ 234 (334)
.+.+.++.+|||+.+..|.=+.+++.. ...+.+++.|.+..-++....++...+ .|+ .++||-
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccce
Confidence 346778999999999999655554443 223589999999998888887765432 122 127999
Q ss_pred EEeC----c--cccC------CC---C-------HHHHHHHHHHcccCCcEEEEEEecc
Q 019861 235 VHAG----A--AIHC------WS---S-------PSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 235 V~~~----~--vl~h------~~---d-------~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
|+.. . ++.- +. + ..++|......+++||+|+-++=..
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 9853 2 2211 11 0 1367788889999999999887665
No 286
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.10 E-value=0.28 Score=48.20 Aligned_cols=94 Identities=22% Similarity=0.221 Sum_probs=66.3
Q ss_pred CCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------------C-------
Q 019861 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------------N------- 226 (334)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------------~------- 226 (334)
..++.+|+=+|+|. |..+...++.. .+.|+++|.+++.++.+++.-.... .
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 45689999999998 55555555442 3489999999999998886311100 0
Q ss_pred -CCC--CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 227 -FPK--DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 227 -~~~--~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
+.+ +.+|+|+.......-+.|..+.++..+.+||||+++....
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 001 3589999887765555676667999999999999877554
No 287
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.04 E-value=0.036 Score=47.82 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=60.5
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCC---------CeEEEEeCCHHHHHHHHHHHhcC-----------CCCCCCCceEEEe
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLF---------SLVVALDYSENMLKQCYEFVQQE-----------SNFPKDSIDAVHA 237 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~---------~~v~giD~s~~~~~~a~~~~~~~-----------~~~~~~~fD~V~~ 237 (334)
-.+++|+....|.|+..|.++... ..++++|+-+..--..--.++.+ ..|...+.|+|+|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvc 121 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVC 121 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEe
Confidence 368999999999999999876211 13899997552110000000000 0244568999999
Q ss_pred Ccc-----ccCCCCH------HHHHHHHHHcccCCcEEEEEEeccC
Q 019861 238 GAA-----IHCWSSP------STGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 238 ~~v-----l~h~~d~------~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
... ||.+.+. .++|.-...+|+|||.++.-.+-..
T Consensus 122 DGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 122 DGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred CCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 754 5544432 2567777889999999998666543
No 288
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.99 E-value=0.53 Score=43.03 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=66.9
Q ss_pred ccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------------CCCCCC
Q 019861 172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------------NFPKDS 231 (334)
Q Consensus 172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------------~~~~~~ 231 (334)
...-.++.+||-+|+|. |..+...++..--.+|+.+|+++..++.|++ +.... .+.+..
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhccccC
Confidence 33455689999999997 6555555665435799999999999999998 33211 122345
Q ss_pred ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
+|+.+-...++ ..++.....++.||.+++......
T Consensus 243 ~d~~~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 243 PDVTFDCSGAE------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred CCeEEEccCch------HHHHHHHHHhccCCEEEEeccCCC
Confidence 88888765544 346677889999999888776554
No 289
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.96 E-value=2.3 Score=37.36 Aligned_cols=90 Identities=16% Similarity=0.088 Sum_probs=50.6
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCC---CCCceEEEeCccc
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFP---KDSIDAVHAGAAI 241 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~---~~~fD~V~~~~vl 241 (334)
.|++||-+|=..- .+.+++-.+...+++.+|+++..++..++.....+ ++| .++||+++..=.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 5789999995543 33444444555799999999999998887654322 444 479999987421
Q ss_pred cCCCCHHHHHHHHHHcccCCc-EEEEEE
Q 019861 242 HCWSSPSTGVAEISRVLRPGG-VFVGTT 268 (334)
Q Consensus 242 ~h~~d~~~~L~~i~r~LkpgG-~lii~~ 268 (334)
+-..-...++......||..| ..++..
T Consensus 122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 122 YTPEGLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp SSHHHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 000122468888899998766 544433
No 290
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=93.87 E-value=0.031 Score=34.05 Aligned_cols=35 Identities=20% Similarity=0.675 Sum_probs=22.6
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCcccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (334)
.+.||.|+........ .. ......++|++||..+.
T Consensus 2 ~~~CP~C~~~~~v~~~---~~-~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDS---QL-GANGGKVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEEeCHH---Hc-CCCCCEEECCCCCCEEE
Confidence 5789999997654331 01 11223699999998763
No 291
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=93.77 E-value=0.029 Score=33.29 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=16.2
Q ss_pred CCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 74 CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
||.||.++......+ +...-+.|+.||.+.
T Consensus 3 C~~CG~~l~~~ip~g-----d~r~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 3 CPQCGGPLERRIPEG-----DDRERLVCPACGFIH 32 (34)
T ss_dssp -TTT--B-EEE--TT------SS-EEEETTTTEEE
T ss_pred cccccChhhhhcCCC-----CCccceECCCCCCEE
Confidence 999999986654311 134679999999764
No 292
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.74 E-value=0.19 Score=43.87 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=61.5
Q ss_pred CCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHH----HHHHHHHHhcCCCCC-----------CCCceEEEe
Q 019861 174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENM----LKQCYEFVQQESNFP-----------KDSIDAVHA 237 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~----~~~a~~~~~~~~~~~-----------~~~fD~V~~ 237 (334)
...++.+||-+|+++|.......+- +|..-|+++|+|... +..|+++..-....+ -+-.|+|++
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 4567999999999999998888886 777889999999853 444444322111111 134677665
Q ss_pred CccccCCCCHH---HHHHHHHHcccCCcEEEEEEec
Q 019861 238 GAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 238 ~~vl~h~~d~~---~~L~~i~r~LkpgG~lii~~~~ 270 (334)
. +..|. .+.-+..-.||+||.++++.-.
T Consensus 233 D-----vaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 233 D-----VAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred c-----CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 4 33343 2344567789999998886654
No 293
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.69 E-value=0.24 Score=42.47 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=47.4
Q ss_pred CCCcEEEECCCcCHHHHHHHHc----CCCCeEEEEeCCHHHHHH-HHHH---------HhcCC----------CC-CCCC
Q 019861 177 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQ-CYEF---------VQQES----------NF-PKDS 231 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~-a~~~---------~~~~~----------~~-~~~~ 231 (334)
++..|+|+|.-.|..+..++.. +..++|+|+|++...... +.+. +++.. .. ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 3579999999999877666542 456799999996543321 1111 00000 01 1223
Q ss_pred ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
..+|+.. +-|...+..+.|+.....+++|+++++.+...
T Consensus 112 ~vlVilD-s~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVILD-SSHTHEHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp SEEEEES-S----SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred ceEEEEC-CCccHHHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 4455543 33334466788999999999999999976654
No 294
>PHA01634 hypothetical protein
Probab=93.57 E-value=0.21 Score=39.20 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=40.3
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~ 223 (334)
.+++|+|||.+-|..+..++-.|. ..|+++++++...+..++....
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhh
Confidence 578999999999999999998884 6899999999999998886553
No 295
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.56 E-value=0.24 Score=39.07 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=49.5
Q ss_pred CCceEEEeCccccCCCCH----HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHH
Q 019861 230 DSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 305 (334)
Q Consensus 230 ~~fD~V~~~~vl~h~~d~----~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ 305 (334)
..+|+|+.... ---.|| ..++++++++++|||.+...+ ....+++
T Consensus 49 ~~~Da~ylDgF-sP~~nPelWs~e~~~~l~~~~~~~~~l~Tys------------------------------~a~~Vr~ 97 (124)
T PF05430_consen 49 ARFDAWYLDGF-SPAKNPELWSEELFKKLARLSKPGGTLATYS------------------------------SAGAVRR 97 (124)
T ss_dssp T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEES--------------------------------BHHHHH
T ss_pred ccCCEEEecCC-CCcCCcccCCHHHHHHHHHHhCCCcEEEEee------------------------------chHHHHH
Confidence 56888887642 222355 479999999999999776521 2346899
Q ss_pred HHHhCCCcEEEEe-ecCcEEEEEEEcC
Q 019861 306 LCRACGLVDFKCT-RNRGFVMFTATKP 331 (334)
Q Consensus 306 ll~~~Gf~~v~~~-~~g~~~~~~a~K~ 331 (334)
.|.++||.+.+.- .++.--|++|.||
T Consensus 98 ~L~~aGF~v~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 98 ALQQAGFEVEKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp HHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred HHHHcCCEEEEcCCCCCcchheEEEcC
Confidence 9999999987754 4567788888875
No 296
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=93.47 E-value=0.22 Score=44.78 Aligned_cols=89 Identities=13% Similarity=0.209 Sum_probs=67.6
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------------CCCCCCceEEE
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------------NFPKDSIDAVH 236 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------------~~~~~~fD~V~ 236 (334)
..+++|-||.|.|..++.....-...++.-+|++...++..++.+.... ....++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 4679999999999999888877434578889999999988887655321 24478999998
Q ss_pred eCccccCCCCH---------HHHHHHHHHcccCCcEEEEEEec
Q 019861 237 AGAAIHCWSSP---------STGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 237 ~~~vl~h~~d~---------~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
.-- .|| ......+.+.||+||+++...-+
T Consensus 201 ~ds-----sdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 201 TDS-----SDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred Eec-----CCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 753 233 35678899999999999886543
No 297
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=93.43 E-value=0.069 Score=47.73 Aligned_cols=89 Identities=18% Similarity=0.263 Sum_probs=57.5
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH-------HHh----cCC---C----------C-CCC-
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE-------FVQ----QES---N----------F-PKD- 230 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~-------~~~----~~~---~----------~-~~~- 230 (334)
.+++|||+|||.|.....+...+. ..+...|++...++...- ... +.. + + -.+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 478999999999988888877762 588888988877732110 000 000 0 0 012
Q ss_pred -CceEEEeCccccCCCCHHHH-HHHHHHcccCCcEEEE
Q 019861 231 -SIDAVHAGAAIHCWSSPSTG-VAEISRVLRPGGVFVG 266 (334)
Q Consensus 231 -~fD~V~~~~vl~h~~d~~~~-L~~i~r~LkpgG~lii 266 (334)
.||+|.++..+....+...+ +......++++|+++.
T Consensus 195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred cchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 68888888777665544444 5566667788887665
No 298
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.39 E-value=0.64 Score=42.09 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=50.8
Q ss_pred HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHhc
Q 019861 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQ 223 (334)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~ 223 (334)
-+.+.....+.+.+++..||.--|.|..+..+.+.++. ++++|+|.++.+++.|++.+..
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~ 70 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE 70 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc
Confidence 34456667778888899999999999999999998753 5699999999999999998764
No 299
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=93.30 E-value=2.8 Score=39.71 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=61.5
Q ss_pred HHHHcccCCCCCCcEEEECCCcCHH----HHHHHHc--C-CCCeEEEEeC----CHHHHHHHHHHHhcCC----------
Q 019861 167 ELMKGYLKPVLGGNIIDASCGSGLF----SRIFAKS--G-LFSLVVALDY----SENMLKQCYEFVQQES---------- 225 (334)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~----~~~l~~~--~-~~~~v~giD~----s~~~~~~a~~~~~~~~---------- 225 (334)
..|++.+.....-+|+|+|-|.|.- ...|+.+ + |..+++||+. +...++.+.+++....
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 3555556555667999999999954 4444443 2 4568999999 7777777666543211
Q ss_pred ---------------CCCCCCceEEEeCccccCCCC-------HH-HHHHHHHHcccCCcEEEEEEecc
Q 019861 226 ---------------NFPKDSIDAVHAGAAIHCWSS-------PS-TGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 226 ---------------~~~~~~fD~V~~~~vl~h~~d-------~~-~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
...++..=+|-+...|||+.+ |. .+|+.+ +.|+|.-++ +.+...
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv-~~E~ea 246 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVV-LVEQEA 246 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEE-EEeecC
Confidence 112333334445666888862 33 355544 468997544 444444
No 300
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=93.17 E-value=0.059 Score=29.91 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=18.5
Q ss_pred eCCCCCCCccccCCCCcccccccCCcccccccccccc
Q 019861 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (334)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (334)
.||.|+..... ....|+.||+.|.
T Consensus 2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPE-------------SAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence 59999997543 4578999998764
No 301
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=92.87 E-value=0.064 Score=35.47 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=23.7
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (334)
++.||.||..+..... . ...++.|+.||..+-.
T Consensus 2 ~~~CP~CG~~iev~~~--~-----~GeiV~Cp~CGaeleV 34 (54)
T TIGR01206 2 QFECPDCGAEIELENP--E-----LGELVICDECGAELEV 34 (54)
T ss_pred ccCCCCCCCEEecCCC--c-----cCCEEeCCCCCCEEEE
Confidence 4689999998765431 1 1358899999986644
No 302
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=92.73 E-value=0.061 Score=38.80 Aligned_cols=32 Identities=22% Similarity=0.533 Sum_probs=23.5
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (334)
...||.|+.+-... +..++|+|..||..+...
T Consensus 35 ~~~Cp~C~~~~VkR---------~a~GIW~C~kCg~~fAGg 66 (89)
T COG1997 35 KHVCPFCGRTTVKR---------IATGIWKCRKCGAKFAGG 66 (89)
T ss_pred CCcCCCCCCcceee---------eccCeEEcCCCCCeeccc
Confidence 47899999973322 245899999999877443
No 303
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=92.60 E-value=0.31 Score=43.43 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=35.1
Q ss_pred CCcEEEECCCcCHHHHHHHHcC--------CCCeEEEEeCCHHHHHHHHHHHhc
Q 019861 178 GGNIIDASCGSGLFSRIFAKSG--------LFSLVVALDYSENMLKQCYEFVQQ 223 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~--------~~~~v~giD~s~~~~~~a~~~~~~ 223 (334)
..+|+|+|+|.|.++..+.+.. ...+++-+|+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4699999999999988876642 135899999999998888887665
No 304
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=92.59 E-value=0.072 Score=37.46 Aligned_cols=49 Identities=14% Similarity=0.324 Sum_probs=32.5
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCccccc--ccccccccccCccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCN--TCKKTYSGVGTHFDMTAA 120 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~~~~~~~~ 120 (334)
++.||.||...........+. .....+.+|. +||+.|.....+...+..
T Consensus 1 mm~CP~Cg~~a~irtSr~~s~-~~~~~Y~qC~N~eCg~tF~t~es~s~tis~ 51 (72)
T PRK09678 1 MFHCPLCQHAAHARTSRYITD-TTKERYHQCQNVNCSATFITYESVQRYIVK 51 (72)
T ss_pred CccCCCCCCccEEEEChhcCh-hhheeeeecCCCCCCCEEEEEEEEEEEEcC
Confidence 468999999763332222222 2455799999 999999887666555443
No 305
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=92.23 E-value=1.4 Score=43.55 Aligned_cols=101 Identities=19% Similarity=0.184 Sum_probs=58.6
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHH-----HH--------HHHHHHHhcCCCCCCCCce
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSEN-----ML--------KQCYEFVQQESNFPKDSID 233 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~-----~~--------~~a~~~~~~~~~~~~~~fD 233 (334)
+-..|--..++..|||+||..|.|+..+.+.-| .+.|+|+|+-+- .. +.++..+... ...-..|
T Consensus 35 ln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~--l~t~~ad 112 (780)
T KOG1098|consen 35 LNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKI--LKTWKAD 112 (780)
T ss_pred HHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHH--HHhCCCc
Confidence 333343345578999999999999999988744 457899998762 11 1111111111 1122348
Q ss_pred EEEeCccc----cCCCCH-------HHHHHHHHHcccCCcEEEEEEec
Q 019861 234 AVHAGAAI----HCWSSP-------STGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 234 ~V~~~~vl----~h~~d~-------~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
+|+....- .+..|- ..+|+-....|+.||.++--.+-
T Consensus 113 vVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfr 160 (780)
T KOG1098|consen 113 VVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFR 160 (780)
T ss_pred EEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccccc
Confidence 88765431 111111 24566677888999995554443
No 306
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.19 E-value=0.42 Score=41.07 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=37.4
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHHh
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL--FSLVVALDYSENMLKQCYEFVQ 222 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~giD~s~~~~~~a~~~~~ 222 (334)
.-..++....+-++.|-.||.|+++-.+.-... -..++|.|+++.+++.|++++.
T Consensus 42 R~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 42 RALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 334455444567999999999998766543321 2379999999999999998754
No 307
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=92.11 E-value=0.072 Score=35.45 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=23.8
Q ss_pred ccCCCceeCCCCCCCccccCCCCcccccccCCcccccccccc
Q 019861 66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (334)
Q Consensus 66 ~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (334)
..+.-.+.||.||......... -......++|++||+.
T Consensus 22 ~e~~v~F~CPnCGe~~I~Rc~~----CRk~g~~Y~Cp~CGF~ 59 (61)
T COG2888 22 GETAVKFPCPNCGEVEIYRCAK----CRKLGNPYRCPKCGFE 59 (61)
T ss_pred CCceeEeeCCCCCceeeehhhh----HHHcCCceECCCcCcc
Confidence 4455679999999765443211 0112357899999864
No 308
>PHA00626 hypothetical protein
Probab=92.10 E-value=0.087 Score=34.56 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=21.5
Q ss_pred eCCCCCCCc-cccCCCCcccccccCCccccccccccccc
Q 019861 73 ACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (334)
Q Consensus 73 ~CPiC~~~l-~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (334)
.||.||+.. .....-. ...+.+.|+.||..|..
T Consensus 2 ~CP~CGS~~Ivrcg~cr-----~~snrYkCkdCGY~ft~ 35 (59)
T PHA00626 2 SCPKCGSGNIAKEKTMR-----GWSDDYVCCDCGYNDSK 35 (59)
T ss_pred CCCCCCCceeeeeceec-----ccCcceEcCCCCCeech
Confidence 699999953 3322100 02367999999988855
No 309
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=92.09 E-value=0.07 Score=30.67 Aligned_cols=26 Identities=31% Similarity=0.837 Sum_probs=14.2
Q ss_pred eCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
.||.|++...... ...+.|+.|++.+
T Consensus 4 ~Cp~C~se~~y~D----------~~~~vCp~C~~ew 29 (30)
T PF08274_consen 4 KCPLCGSEYTYED----------GELLVCPECGHEW 29 (30)
T ss_dssp --TTT-----EE-----------SSSEEETTTTEEE
T ss_pred CCCCCCCcceecc----------CCEEeCCcccccC
Confidence 6999999765532 2689999999764
No 310
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=92.09 E-value=0.083 Score=33.19 Aligned_cols=30 Identities=20% Similarity=0.476 Sum_probs=19.8
Q ss_pred eeCCCCCCCccccCCCCcccccccCCcccccccccccc
Q 019861 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (334)
+.||.|++...... ...+.+.|+.||.+..
T Consensus 1 m~Cp~Cg~~~~~~D--------~~~g~~vC~~CG~Vl~ 30 (43)
T PF08271_consen 1 MKCPNCGSKEIVFD--------PERGELVCPNCGLVLE 30 (43)
T ss_dssp ESBTTTSSSEEEEE--------TTTTEEEETTT-BBEE
T ss_pred CCCcCCcCCceEEc--------CCCCeEECCCCCCEee
Confidence 47999999753222 1336789999997653
No 311
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=91.98 E-value=1 Score=41.88 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=37.8
Q ss_pred CCCcEEEECCCcCHHHHHHHHc----CC----CCeEEEEeCCHHHHHHHHHHHhcC
Q 019861 177 LGGNIIDASCGSGLFSRIFAKS----GL----FSLVVALDYSENMLKQCYEFVQQE 224 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~----~~----~~~v~giD~s~~~~~~a~~~~~~~ 224 (334)
....++|||.|.|.++..+.+. .| ..++.-+|+|++..+.-++.++..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 4568999999999988777654 22 468999999999888877776654
No 312
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=91.92 E-value=0.084 Score=30.86 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=15.6
Q ss_pred eCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
=||.||++..... .....+|+.|++.+
T Consensus 5 fC~~CG~~t~~~~---------~g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 5 FCGRCGAPTKPAP---------GGWARRCPSCGHEH 31 (32)
T ss_dssp B-TTT--BEEE-S---------SSS-EEESSSS-EE
T ss_pred ccCcCCccccCCC---------CcCEeECCCCcCEe
Confidence 4999999876544 33679999999754
No 313
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.88 E-value=1.2 Score=45.61 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=29.0
Q ss_pred HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861 248 STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 317 (334)
Q Consensus 248 ~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~ 317 (334)
..+++.++++++|||.+.-. -....+++-|.++||++.+.
T Consensus 186 ~~~~~~l~~~~~~~~~~~t~------------------------------t~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 186 PNLFNALARLARPGATLATF------------------------------TSAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred HHHHHHHHHHhCCCCEEEEe------------------------------ehHHHHHHHHHHcCCeeeec
Confidence 36777888888887776642 23457888899999987764
No 314
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.75 E-value=0.36 Score=41.89 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=55.6
Q ss_pred CCCCcHHHHHHHHcccCC------CCCCcEEEECCCcCHH--HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----
Q 019861 158 GFPGPEKEFELMKGYLKP------VLGGNIIDASCGSGLF--SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---- 225 (334)
Q Consensus 158 ~~~~~~~~~~~l~~~l~~------~~~~~vLDiGcG~G~~--~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---- 225 (334)
..|+.......+.+++.. .+..++||||.|.--. +.-..+.|+ ..+|.|+++..++.|+..+....
T Consensus 53 pvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw--rfvGseid~~sl~sA~~ii~~N~~l~~ 130 (292)
T COG3129 53 PVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW--RFVGSEIDSQSLSSAKAIISANPGLER 130 (292)
T ss_pred CCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc--eeecCccCHHHHHHHHHHHHcCcchhh
Confidence 344555555566665532 2345889999987643 222344566 99999999999999998766542
Q ss_pred ------------CCC-----CCCceEEEeCcccc
Q 019861 226 ------------NFP-----KDSIDAVHAGAAIH 242 (334)
Q Consensus 226 ------------~~~-----~~~fD~V~~~~vl~ 242 (334)
.|+ .+.||+++|+--+|
T Consensus 131 ~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 131 AIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred heeEEeccCccccccccccccceeeeEecCCCcc
Confidence 122 56899999986655
No 315
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=91.62 E-value=0.089 Score=41.35 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=20.7
Q ss_pred eeCCCCCCCccccCCCCcccccccCCccccccccc
Q 019861 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (334)
..||.||.+|+... +.+.||.|+.
T Consensus 29 ~hCp~Cg~PLF~Kd-----------G~v~CPvC~~ 52 (131)
T COG1645 29 KHCPKCGTPLFRKD-----------GEVFCPVCGY 52 (131)
T ss_pred hhCcccCCcceeeC-----------CeEECCCCCc
Confidence 46999999999854 7899999995
No 316
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=91.49 E-value=1.6 Score=40.71 Aligned_cols=100 Identities=17% Similarity=0.121 Sum_probs=68.4
Q ss_pred cCCCCCCcEEEECCCcCHHHHHHHHcCCC----CeEEEEeCCHHHHHHHHHHHhcCC-----------------------
Q 019861 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLF----SLVVALDYSENMLKQCYEFVQQES----------------------- 225 (334)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----~~v~giD~s~~~~~~a~~~~~~~~----------------------- 225 (334)
+...++.+|||+.+..|.=+..+.+.... ..+++-|.+..-+...........
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCc
Confidence 45667999999999999888777776432 278999999876666555432111
Q ss_pred CCCCCCceEEEeC------ccccCCCCH-----------------HHHHHHHHHcccCCcEEEEEEeccC
Q 019861 226 NFPKDSIDAVHAG------AAIHCWSSP-----------------STGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 226 ~~~~~~fD~V~~~------~vl~h~~d~-----------------~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
+.....||-|++. ..+.+-++. ..+|..-.++||+||.++-++=...
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 0122468888863 233333221 2568888999999999999887654
No 317
>PF14353 CpXC: CpXC protein
Probab=91.33 E-value=0.093 Score=41.58 Aligned_cols=40 Identities=18% Similarity=0.438 Sum_probs=25.9
Q ss_pred eeCCCCCCCccccCCCCcccc----------cccCCcccccccccccccc
Q 019861 72 LACPICYKPLTWIGDSSLSIE----------SAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~----------~~~~~~~~C~~C~~~~~~~ 111 (334)
+.||.|+..........++.. ......+.|++||+.+...
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 689999996644332222211 2255689999999887654
No 318
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.27 E-value=0.75 Score=44.30 Aligned_cols=97 Identities=15% Similarity=0.217 Sum_probs=74.2
Q ss_pred CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------------CCCCCCceEE
Q 019861 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------------NFPKDSIDAV 235 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------------~~~~~~fD~V 235 (334)
.+..+|-+|-|.|.+...+....+...++++++++.+++.++..+.-.. .-.+..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 3578999999999999999999888899999999999999987643110 1245689998
Q ss_pred EeC----ccccCCCCH------HHHHHHHHHcccCCcEEEEEEeccCCC
Q 019861 236 HAG----AAIHCWSSP------STGVAEISRVLRPGGVFVGTTYIVDGP 274 (334)
Q Consensus 236 ~~~----~vl~h~~d~------~~~L~~i~r~LkpgG~lii~~~~~~~~ 274 (334)
... . .|-+.-| ..+|..++..|.|.|.+++....++..
T Consensus 375 ~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~ 422 (482)
T KOG2352|consen 375 MVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSS 422 (482)
T ss_pred EEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcc
Confidence 862 2 3334322 367899999999999998877776543
No 319
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=91.23 E-value=0.11 Score=34.14 Aligned_cols=29 Identities=24% Similarity=0.527 Sum_probs=22.9
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (334)
.-.|++||.++.... .+++|+.|+..|..
T Consensus 5 ~~~C~~Cg~~~~~~d-----------DiVvCp~CgapyHR 33 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGD-----------DIVVCPECGAPYHR 33 (54)
T ss_pred CccChhhCCcccCCC-----------CEEECCCCCCcccH
Confidence 357999999876444 68999999988755
No 320
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.14 E-value=6 Score=34.57 Aligned_cols=88 Identities=25% Similarity=0.336 Sum_probs=57.8
Q ss_pred CCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----C-C-------CCCCCceEEEeCccc
Q 019861 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----S-N-------FPKDSIDAVHAGAAI 241 (334)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----~-~-------~~~~~fD~V~~~~vl 241 (334)
.++.+||..|+|. |..+..+++.. ..++++++.++...+.+++.-... . . ...+.+|+|+....
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~- 210 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVG- 210 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCC-
Confidence 4678999999986 65555555553 258999999987777765431100 0 0 12356888885432
Q ss_pred cCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861 242 HCWSSPSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 242 ~h~~d~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
.+ ..+..+.+.|+++|.++.....
T Consensus 211 ----~~-~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 211 ----GP-ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred ----CH-HHHHHHHHhcccCCEEEEEccC
Confidence 21 3577788899999998875543
No 321
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=90.93 E-value=0.098 Score=40.22 Aligned_cols=25 Identities=32% Similarity=0.812 Sum_probs=20.2
Q ss_pred CCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 74 CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (334)
||+||+++.+. -+.|++|+......
T Consensus 1 CPvCg~~l~vt-------------~l~C~~C~t~i~G~ 25 (113)
T PF09862_consen 1 CPVCGGELVVT-------------RLKCPSCGTEIEGE 25 (113)
T ss_pred CCCCCCceEEE-------------EEEcCCCCCEEEee
Confidence 99999998874 58999999766444
No 322
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.82 E-value=4.1 Score=33.83 Aligned_cols=112 Identities=19% Similarity=0.130 Sum_probs=70.9
Q ss_pred EECCCcCHHHHHHHHcCC-CCeEEEEeCCH--HHHHHHH---HHHh---cCC----------------CCCCCCceEEEe
Q 019861 183 DASCGSGLFSRIFAKSGL-FSLVVALDYSE--NMLKQCY---EFVQ---QES----------------NFPKDSIDAVHA 237 (334)
Q Consensus 183 DiGcG~G~~~~~l~~~~~-~~~v~giD~s~--~~~~~a~---~~~~---~~~----------------~~~~~~fD~V~~ 237 (334)
=||=|.=.|+..|++... ...+++.-++. +..+... +++. ..+ ....+.||.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 366677778888887743 45666654443 2222221 2211 111 235688999998
Q ss_pred CccccCCC--------C-------HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHH
Q 019861 238 GAAIHCWS--------S-------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE 302 (334)
Q Consensus 238 ~~vl~h~~--------d-------~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 302 (334)
++ -|.. + ...+++.+..+|+++|.+.++...... |+.-.
T Consensus 82 NF--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p------------------------y~~W~ 135 (166)
T PF10354_consen 82 NF--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP------------------------YDSWN 135 (166)
T ss_pred eC--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC------------------------Ccccc
Confidence 75 2333 0 136789999999999999997765431 34557
Q ss_pred HHHHHHhCCCcEEEEeec
Q 019861 303 IEDLCRACGLVDFKCTRN 320 (334)
Q Consensus 303 l~~ll~~~Gf~~v~~~~~ 320 (334)
+.++.+++||..++....
T Consensus 136 i~~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 136 IEELAAEAGLVLVRKVPF 153 (166)
T ss_pred HHHHHHhcCCEEEEEecC
Confidence 778999999988876543
No 323
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.79 E-value=0.68 Score=43.15 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=35.3
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~ 219 (334)
.+-..++|+|.|.|+++..+.-.+ +..|.+||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 344689999999999999998765 4699999999877777664
No 324
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=90.75 E-value=0.088 Score=43.01 Aligned_cols=39 Identities=21% Similarity=0.483 Sum_probs=24.4
Q ss_pred CceeCCCCCCCccccCCCCcc------cccccCCccccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLS------IESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~------~~~~~~~~~~C~~C~~~~ 108 (334)
..-.||.|+.++......... ........++|++||.+|
T Consensus 96 e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiY 140 (165)
T COG1656 96 EFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIY 140 (165)
T ss_pred ccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccc
Confidence 356799999987543321110 111134578899999988
No 325
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=90.63 E-value=3.9 Score=42.02 Aligned_cols=95 Identities=13% Similarity=0.055 Sum_probs=59.7
Q ss_pred CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHH----HHHhc--------------CCCCCCCCceEEEeCcc
Q 019861 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY----EFVQQ--------------ESNFPKDSIDAVHAGAA 240 (334)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~----~~~~~--------------~~~~~~~~fD~V~~~~v 240 (334)
..+.-.|.|+=.....+.+..|...++-+|-+...-+.+. ..+.. ...||+-+.=.|+..+.
T Consensus 484 ~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~ 563 (730)
T COG1198 484 EHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADT 563 (730)
T ss_pred CeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechh
Confidence 3678888888889999999999889999987765433222 11211 12355555556666666
Q ss_pred ccCCCCHH---HHHHHHHHcc---c---CCcEEEEEEeccCC
Q 019861 241 IHCWSSPS---TGVAEISRVL---R---PGGVFVGTTYIVDG 273 (334)
Q Consensus 241 l~h~~d~~---~~L~~i~r~L---k---pgG~lii~~~~~~~ 273 (334)
.-+.+|.. .+++-+..+. . ..|.+++.+.+.+.
T Consensus 564 ~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 564 GLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred hhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 66777763 3333333333 1 34678888888764
No 326
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=90.62 E-value=0.052 Score=33.74 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=24.1
Q ss_pred eCCCCCCCccccCCCCcccccccCCcccccccccccccccC
Q 019861 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (334)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~ 113 (334)
.||.|+..+..... ....+.+|++|+-++.....
T Consensus 1 ~CP~C~~~l~~~~~-------~~~~id~C~~C~G~W~d~~e 34 (41)
T PF13453_consen 1 KCPRCGTELEPVRL-------GDVEIDVCPSCGGIWFDAGE 34 (41)
T ss_pred CcCCCCcccceEEE-------CCEEEEECCCCCeEEccHHH
Confidence 49999997654321 23478999999988866543
No 327
>PRK10742 putative methyltransferase; Provisional
Probab=90.56 E-value=0.94 Score=40.05 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=45.5
Q ss_pred HHHHcccCCCCCC--cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861 167 ELMKGYLKPVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (334)
Q Consensus 167 ~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~ 223 (334)
+.+.+.++..++. +|||.-+|.|..+..++..|. .|+++|-++......++.+..
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHH
Confidence 3556666655666 899999999999999999976 799999999988888877654
No 328
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=90.31 E-value=0.15 Score=41.46 Aligned_cols=39 Identities=23% Similarity=0.500 Sum_probs=24.8
Q ss_pred ceeCCCCCCCccccCCCCc------ccccccCCcccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSL------SIESAAGSSLQCNTCKKTYS 109 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~------~~~~~~~~~~~C~~C~~~~~ 109 (334)
.-.||.|++.+........ ........+++|+.||.+|-
T Consensus 91 ~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW 135 (147)
T PF01927_consen 91 FSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYW 135 (147)
T ss_pred CCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEec
Confidence 4579999997744332211 11122445899999999883
No 329
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=90.29 E-value=6.1 Score=34.93 Aligned_cols=94 Identities=18% Similarity=0.307 Sum_probs=62.1
Q ss_pred CCCcEEEECCCcCHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCce-E
Q 019861 177 LGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKDSID-A 234 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD-~ 234 (334)
.+...+|+|+|+..=++.+.+ .+.-..++-+|++...++...+.+...- ..+...-- .
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 357999999999865555544 3444689999999998887665443221 12222222 2
Q ss_pred EEeCccccCCC-CH-HHHHHHHHHcccCCcEEEEEEec
Q 019861 235 VHAGAAIHCWS-SP-STGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 235 V~~~~vl~h~~-d~-~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
++....|-.+. ++ ..+|..++..|+||-.+++.+-.
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl 195 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDL 195 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 33344565554 22 47899999999999998885543
No 330
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.87 E-value=2.8 Score=38.87 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=56.1
Q ss_pred CCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------CC-----CCCCceEEEeCcccc
Q 019861 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------NF-----PKDSIDAVHAGAAIH 242 (334)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~~-----~~~~fD~V~~~~vl~ 242 (334)
.++.+||=+|+|. |.++..+++.....+++++|.++..++.+++. .... .+ ..+.+|+|+-.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~~vi~~~~~~~~~~~~~~g~~D~vid~---- 242 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GADKLVNPQNDDLDHYKAEKGYFDVSFEV---- 242 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCcEEecCCcccHHHHhccCCCCCEEEEC----
Confidence 3578899898864 45555566553223689999999988888763 2111 00 01236776543
Q ss_pred CCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 243 CWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 243 h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
...+ ..++...+.|++||++++...
T Consensus 243 -~G~~-~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 243 -SGHP-SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -CCCH-HHHHHHHHHhhcCCEEEEEcc
Confidence 3333 357788899999999887654
No 331
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=89.62 E-value=0.18 Score=30.34 Aligned_cols=28 Identities=18% Similarity=0.511 Sum_probs=20.6
Q ss_pred CceeCCCCCCCccccCCCCcccccccCCcccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (334)
...+|+.|++..... ..+.+.|..||++
T Consensus 7 ~~~~C~~C~~~~~~~----------~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 7 PNEPCPVCGSRWFYS----------DDGFYYCDRCGHQ 34 (36)
T ss_pred CCCcCCCCCCeEeEc----------cCCEEEhhhCceE
Confidence 446799999984332 2378999999975
No 332
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.51 E-value=1.6 Score=40.49 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=56.5
Q ss_pred CCCCCcEEEECCCc-CHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC---CCCC-CCceEEEeCccccCCCCHH
Q 019861 175 PVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES---NFPK-DSIDAVHAGAAIHCWSSPS 248 (334)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~---~~~~-~~fD~V~~~~vl~h~~d~~ 248 (334)
..++.+||-+|+|. |.++..++++ ....+++++|.++.-++.+++ ..... ...+ ..+|+|+-.-.- ..-.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~~~~~~~~~~~~g~d~viD~~G~---~~~~ 236 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADETYLIDDIPEDLAVDHAFECVGG---RGSQ 236 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCceeehhhhhhccCCcEEEECCCC---CccH
Confidence 34588999999875 4455555553 223479999999888887764 21111 1111 247777643220 0023
Q ss_pred HHHHHHHHcccCCcEEEEEEe
Q 019861 249 TGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 249 ~~L~~i~r~LkpgG~lii~~~ 269 (334)
..+....+.|++||++++.-.
T Consensus 237 ~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 237 SAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHHHHHhCcCCcEEEEEee
Confidence 468888999999999887543
No 333
>PRK13699 putative methylase; Provisional
Probab=89.24 E-value=1.3 Score=38.83 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=16.6
Q ss_pred HHHHHHHHHcccCCcEEEE
Q 019861 248 STGVAEISRVLRPGGVFVG 266 (334)
Q Consensus 248 ~~~L~~i~r~LkpgG~lii 266 (334)
...+.+++|+|||||.+++
T Consensus 52 ~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHcCCCCEEEE
Confidence 4678999999999998876
No 334
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=89.13 E-value=0.17 Score=37.10 Aligned_cols=32 Identities=28% Similarity=0.603 Sum_probs=22.6
Q ss_pred CceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (334)
..+.||.|+....... ..++|.|..|+..+..
T Consensus 34 ~ky~Cp~Cgk~~vkR~---------a~GIW~C~~C~~~~AG 65 (90)
T PF01780_consen 34 AKYTCPFCGKTSVKRV---------ATGIWKCKKCGKKFAG 65 (90)
T ss_dssp S-BEESSSSSSEEEEE---------ETTEEEETTTTEEEE-
T ss_pred CCCcCCCCCCceeEEe---------eeEEeecCCCCCEEeC
Confidence 4588999999653322 3479999999987643
No 335
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=89.12 E-value=0.68 Score=43.92 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=39.0
Q ss_pred CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (334)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~ 224 (334)
..+||||.|+|.++..+..+|. ..|++++.-..|.+.|++.....
T Consensus 68 v~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kn 112 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKN 112 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcC
Confidence 3689999999999999999884 47999999999999999876554
No 336
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=89.05 E-value=0.12 Score=31.83 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=19.3
Q ss_pred eeCCCCCCCccccCCC-CcccccccCCccccccccccc
Q 019861 72 LACPICYKPLTWIGDS-SLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~-~~~~~~~~~~~~~C~~C~~~~ 108 (334)
+.||.||+........ .-+.+....-++.|.+|++.+
T Consensus 1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w 38 (39)
T PF01096_consen 1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW 38 (39)
T ss_dssp S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence 3699999965332211 111122234579999999865
No 337
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=88.99 E-value=0.28 Score=31.22 Aligned_cols=29 Identities=17% Similarity=0.441 Sum_probs=21.0
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
.+.||.||..+..... ....+|+.||.-.
T Consensus 3 ~y~C~~CG~~~~~~~~---------~~~~~Cp~CG~~~ 31 (46)
T PRK00398 3 EYKCARCGREVELDEY---------GTGVRCPYCGYRI 31 (46)
T ss_pred EEECCCCCCEEEECCC---------CCceECCCCCCeE
Confidence 4789999997765431 1368999999744
No 338
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.96 E-value=4 Score=37.32 Aligned_cols=88 Identities=19% Similarity=0.214 Sum_probs=58.3
Q ss_pred CCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----CC--------CCCCCCceEEEeCcc
Q 019861 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----ES--------NFPKDSIDAVHAGAA 240 (334)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----~~--------~~~~~~fD~V~~~~v 240 (334)
..++.+||..|+|. |..+..+++.. ..++++++.++...+.+++.-.. .. ....+.+|+|+....
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g 241 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG 241 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC
Confidence 44577888888763 66666666653 24799999999888877542110 00 122456888875421
Q ss_pred ccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 241 IHCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
....++++.+.|+++|.++....
T Consensus 242 ------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 ------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEECC
Confidence 13468889999999999887643
No 339
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.79 E-value=5.3 Score=36.88 Aligned_cols=90 Identities=16% Similarity=0.089 Sum_probs=57.8
Q ss_pred cCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC----CCCCCCCceEEEeCccccCCCCH
Q 019861 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE----SNFPKDSIDAVHAGAAIHCWSSP 247 (334)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~----~~~~~~~fD~V~~~~vl~h~~d~ 247 (334)
.+..++.+||=.|+|. |.++..+++.. ..++++++.++.-.+.+++.-... .....+.+|+++.... .+
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~-----~~ 234 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAP-----AG 234 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCC-----cH
Confidence 3445688999999753 44445555543 348999999988888877642211 0111245787654332 22
Q ss_pred HHHHHHHHHcccCCcEEEEEEe
Q 019861 248 STGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 248 ~~~L~~i~r~LkpgG~lii~~~ 269 (334)
..+....+.|++||++++.-.
T Consensus 235 -~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 235 -GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -HHHHHHHHhhCCCcEEEEEec
Confidence 368888899999999987554
No 340
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=88.52 E-value=3 Score=38.10 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=54.7
Q ss_pred CCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-CCCCCCceEEEeCccccCCCCHHHHHHHH
Q 019861 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKDSIDAVHAGAAIHCWSSPSTGVAEI 254 (334)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~fD~V~~~~vl~h~~d~~~~L~~i 254 (334)
++.++|=+|+|. |.++..+++......+.++|.++..++.+.....-+. ......+|+|+-.- ..+ ..+..+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~-----G~~-~~~~~~ 217 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDAS-----GDP-SLIDTL 217 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECC-----CCH-HHHHHH
Confidence 466888889875 6666666665322347778988877776654211000 00123578777543 333 357888
Q ss_pred HHcccCCcEEEEEEe
Q 019861 255 SRVLRPGGVFVGTTY 269 (334)
Q Consensus 255 ~r~LkpgG~lii~~~ 269 (334)
.+.|+++|++++.-.
T Consensus 218 ~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 218 VRRLAKGGEIVLAGF 232 (308)
T ss_pred HHhhhcCcEEEEEee
Confidence 899999999987554
No 341
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=88.41 E-value=9 Score=31.02 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=53.6
Q ss_pred CcEEEECCCcCHHHHHH-------HHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------------------
Q 019861 179 GNIIDASCGSGLFSRIF-------AKSGLFSLVVALDYSENMLKQCYEFVQQES-------------------------- 225 (334)
Q Consensus 179 ~~vLDiGcG~G~~~~~l-------~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------------------- 225 (334)
.++||+-+|.|-.-..+ .+++. ++..+.+.....+...+.+.+..
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~~~i~~~~--rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~ 83 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVREAIKRRL--RVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATY 83 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHHHHHHTT----EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHH
T ss_pred eeEEecCCCCCCcccccHHHHHHHHHccC--eEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHH
Confidence 48999999999543322 22343 89999999988888877765432
Q ss_pred ------CCCCCCceEEEeCccccCCCCHHHH-HHHHHHcccCCc--EEEEEEeccCC
Q 019861 226 ------NFPKDSIDAVHAGAAIHCWSSPSTG-VAEISRVLRPGG--VFVGTTYIVDG 273 (334)
Q Consensus 226 ------~~~~~~fD~V~~~~vl~h~~d~~~~-L~~i~r~LkpgG--~lii~~~~~~~ 273 (334)
+..-..||+||+.. .|+.||..+ .+...+.+...| .+++.+....+
T Consensus 84 ~~~~~~p~~~~~yd~II~DE--cH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 84 GHFLLNPCRLKNYDVIIMDE--CHFTDPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp HHHHHTSSCTTS-SEEEECT--TT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred HHHhcCcccccCccEEEEec--cccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 22345799999998 488899743 233333344444 66666666543
No 342
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=88.29 E-value=1 Score=35.16 Aligned_cols=78 Identities=28% Similarity=0.287 Sum_probs=55.6
Q ss_pred CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------C--------CCCCCCceEEEeCccccCCCCHHHHHH
Q 019861 187 GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------S--------NFPKDSIDAVHAGAAIHCWSSPSTGVA 252 (334)
Q Consensus 187 G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~--------~~~~~~fD~V~~~~vl~h~~d~~~~L~ 252 (334)
|.|.++..+++... .+++++|.++.-++.+++.-... . ......+|+|+-.-. . ...++
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~-~~~~~ 73 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----S-GDTLQ 73 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----S-HHHHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----c-HHHHH
Confidence 35777777777643 69999999999998888642111 0 122357999886532 2 35789
Q ss_pred HHHHcccCCcEEEEEEecc
Q 019861 253 EISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 253 ~i~r~LkpgG~lii~~~~~ 271 (334)
....+|+++|.+++.....
T Consensus 74 ~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 74 EAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHEEEEEEEEEESSTS
T ss_pred HHHHHhccCCEEEEEEccC
Confidence 9999999999999876664
No 343
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=87.88 E-value=0.28 Score=40.10 Aligned_cols=42 Identities=24% Similarity=0.491 Sum_probs=23.4
Q ss_pred eeCCCCCCCccc-cCCCCcccccccCCcccccccccccccccC
Q 019861 72 LACPICYKPLTW-IGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (334)
Q Consensus 72 l~CPiC~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~ 113 (334)
..||-||++... .....++.+-......+|++||..|..-+.
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~e~ 43 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTFER 43 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEeEe
Confidence 369999996522 111111111112234899999998866543
No 344
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=87.78 E-value=1.7 Score=36.72 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=65.1
Q ss_pred CCCcEEEECCCcCHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHHHHhcC------C----------CCCCCCceEEE
Q 019861 177 LGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQE------S----------NFPKDSIDAVH 236 (334)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~~~------~----------~~~~~~fD~V~ 236 (334)
.+..|+|+|...|..+...+. .|...+|+++|++-..+..+....... . ....+.--+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 357999999999976655544 354469999998876544433321110 0 01122224445
Q ss_pred eCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCC
Q 019861 237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF 275 (334)
Q Consensus 237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~ 275 (334)
+-.+-||.....+.|+...++|.-|-++++.+-+.++..
T Consensus 149 ilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 555666666667788888999999999999988887653
No 345
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=87.48 E-value=12 Score=29.34 Aligned_cols=72 Identities=17% Similarity=0.090 Sum_probs=56.3
Q ss_pred CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHH
Q 019861 229 KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 308 (334)
Q Consensus 229 ~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~ 308 (334)
++-.|+|+.++--+. .+....|-.+.+.|..+|.+.+.+|-.. ...+.++.++.+...
T Consensus 43 ddvvD~vllWwR~~D-gDL~D~LvDa~~~L~d~G~IWvltPK~g---------------------r~g~V~~~~I~eaA~ 100 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDD-GDLVDALVDARTNLADDGVIWVLTPKAG---------------------RPGHVEPSDIREAAP 100 (127)
T ss_pred cccccEEEEEEECCc-chHHHHHHHHHhhhcCCCEEEEEccCCC---------------------CCCCCCHHHHHHHHh
Confidence 567899998775433 2667788889999999999999998753 234568889999999
Q ss_pred hCCCcEEEEeecCc
Q 019861 309 ACGLVDFKCTRNRG 322 (334)
Q Consensus 309 ~~Gf~~v~~~~~g~ 322 (334)
-+|+...+....+.
T Consensus 101 taGL~~t~~~~v~~ 114 (127)
T PF11253_consen 101 TAGLVQTKSCAVGD 114 (127)
T ss_pred hcCCeeeeeeccCC
Confidence 99998888666543
No 346
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.28 E-value=2.2 Score=41.94 Aligned_cols=89 Identities=22% Similarity=0.240 Sum_probs=63.0
Q ss_pred CCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------------C-------
Q 019861 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------------N------- 226 (334)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------------~------- 226 (334)
.++.++|=+|+|. |..+..++... ...++++|.++..++.+++. .... +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHH
Confidence 4578999999997 44444444432 34899999999988887752 1110 0
Q ss_pred -CC--CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEE
Q 019861 227 -FP--KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 266 (334)
Q Consensus 227 -~~--~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii 266 (334)
++ -..+|+|+..-.+..-+.|.-+.++..+.+|||++++-
T Consensus 240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 11 24699998888777767777788899999999998764
No 347
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=87.20 E-value=0.35 Score=32.77 Aligned_cols=36 Identities=17% Similarity=0.406 Sum_probs=19.3
Q ss_pred CceeCCCCCCCccccCCCCcccccccCCccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (334)
....||.||.+......... ......-++.|..||.
T Consensus 2 ~LkPCPFCG~~~~~~~~~~~-~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 2 ELKPCPFCGSADVLIRQDEG-FDYGMYYYVECTDCGA 37 (61)
T ss_pred CCcCCCCCCCcceEeecccC-CCCCCEEEEEcCCCCC
Confidence 45789999875433221000 0000004578999987
No 348
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=87.12 E-value=0.3 Score=32.64 Aligned_cols=35 Identities=14% Similarity=0.382 Sum_probs=21.0
Q ss_pred CCceeCCCCCCCccccCCCCcccccccCCcccccccccc
Q 019861 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (334)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (334)
...|.||.||..+...-.. =......+.|++||+.
T Consensus 23 ~~~F~CPnCG~~~I~RC~~----CRk~~~~Y~CP~CGF~ 57 (59)
T PRK14890 23 AVKFLCPNCGEVIIYRCEK----CRKQSNPYTCPKCGFE 57 (59)
T ss_pred cCEeeCCCCCCeeEeechh----HHhcCCceECCCCCCc
Confidence 4568999999874432210 0112256888888864
No 349
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=87.07 E-value=0.28 Score=34.09 Aligned_cols=28 Identities=36% Similarity=1.018 Sum_probs=17.1
Q ss_pred eeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (334)
+.||.|+.+|.+.+ +.+.|..|+.-|..
T Consensus 2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~~~ 29 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-----------GHYHCEACQKDYKK 29 (70)
T ss_dssp -B-SSS-SBEEEET-----------TEEEETTT--EEEE
T ss_pred CcCCCCCCccEEeC-----------CEEECcccccccee
Confidence 57999999988866 56777777765544
No 350
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=87.05 E-value=0.34 Score=25.96 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=14.8
Q ss_pred CCCCCCCccccCCCCcccccccCCccccccccc
Q 019861 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (334)
Q Consensus 74 CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (334)
||.||..+... ...|+.||.
T Consensus 2 Cp~CG~~~~~~-------------~~fC~~CG~ 21 (23)
T PF13240_consen 2 CPNCGAEIEDD-------------AKFCPNCGT 21 (23)
T ss_pred CcccCCCCCCc-------------CcchhhhCC
Confidence 89999976542 355999985
No 351
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=86.98 E-value=0.39 Score=36.27 Aligned_cols=31 Identities=26% Similarity=0.646 Sum_probs=23.8
Q ss_pred eeCCCCCCCccccCCCCcccccccCCccccccccccccccc
Q 019861 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG 112 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 112 (334)
-.||.|++...-.. ...+.|+.|++.|....
T Consensus 3 p~CP~C~seytY~d----------g~~~iCpeC~~EW~~~~ 33 (109)
T TIGR00686 3 PPCPKCNSEYTYHD----------GTQLICPSCLYEWNENE 33 (109)
T ss_pred CcCCcCCCcceEec----------CCeeECccccccccccc
Confidence 46999999765433 25799999999997654
No 352
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=86.96 E-value=0.44 Score=31.40 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=20.7
Q ss_pred eeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (334)
.+||.||+.-..... .. .......++.|.+|+...+.
T Consensus 2 kPCPfCGg~~~~~~~-~~-~~~~~~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 2 KPCPFCGGADVYLRR-GF-DPLDLSHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCcceeeEe-cc-CCCCCEEEEECCCCCCCccc
Confidence 579999995431110 00 11112245689999977654
No 353
>PRK10220 hypothetical protein; Provisional
Probab=86.93 E-value=0.42 Score=36.11 Aligned_cols=31 Identities=19% Similarity=0.555 Sum_probs=23.9
Q ss_pred eeCCCCCCCccccCCCCcccccccCCccccccccccccccc
Q 019861 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG 112 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 112 (334)
-.||.|++...-.. ...+.|+.|++.|...+
T Consensus 4 P~CP~C~seytY~d----------~~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 4 PHCPKCNSEYTYED----------NGMYICPECAHEWNDAE 34 (111)
T ss_pred CcCCCCCCcceEcC----------CCeEECCcccCcCCccc
Confidence 46999999765433 25799999999997664
No 354
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=86.83 E-value=0.27 Score=30.33 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=21.7
Q ss_pred eeCCCCCCCccccCCC-CcccccccCCccccccccccc
Q 019861 72 LACPICYKPLTWIGDS-SLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~-~~~~~~~~~~~~~C~~C~~~~ 108 (334)
..||.|++........ .-+.+....-++.|.+|++.+
T Consensus 1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w 38 (40)
T smart00440 1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRW 38 (40)
T ss_pred CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEe
Confidence 3699999865332211 111112234579999999865
No 355
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.76 E-value=14 Score=36.54 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=10.8
Q ss_pred cCCcEEEEEEeccCC
Q 019861 259 RPGGVFVGTTYIVDG 273 (334)
Q Consensus 259 kpgG~lii~~~~~~~ 273 (334)
..+|.+++.+.+.+.
T Consensus 369 ~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 369 EDPGQVIIQTYNPNH 383 (505)
T ss_pred CCCCEEEEEeCCCCC
Confidence 356889988877654
No 356
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=86.64 E-value=0.37 Score=30.39 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=12.0
Q ss_pred cCCccccccccccccc
Q 019861 95 AGSSLQCNTCKKTYSG 110 (334)
Q Consensus 95 ~~~~~~C~~C~~~~~~ 110 (334)
....+.|++||..+..
T Consensus 29 ~vp~~~C~~CGE~~~~ 44 (46)
T TIGR03831 29 NVPALVCPQCGEEYLD 44 (46)
T ss_pred CCCccccccCCCEeeC
Confidence 4467889999987644
No 357
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=86.55 E-value=0.39 Score=26.57 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=16.7
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (334)
...||.||..+.. +...|++||.
T Consensus 2 ~~~Cp~Cg~~~~~-------------~~~fC~~CG~ 24 (26)
T PF13248_consen 2 EMFCPNCGAEIDP-------------DAKFCPNCGA 24 (26)
T ss_pred cCCCcccCCcCCc-------------ccccChhhCC
Confidence 3579999995432 4578999985
No 358
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=86.46 E-value=0.34 Score=27.37 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=6.9
Q ss_pred eCCCCCCCccccC
Q 019861 73 ACPICYKPLTWIG 85 (334)
Q Consensus 73 ~CPiC~~~l~~~~ 85 (334)
.||+|++.+....
T Consensus 1 ~CP~C~s~l~~~~ 13 (28)
T PF03119_consen 1 TCPVCGSKLVREE 13 (28)
T ss_dssp B-TTT--BEEE-C
T ss_pred CcCCCCCEeEcCC
Confidence 4999999987544
No 359
>PRK05580 primosome assembly protein PriA; Validated
Probab=86.43 E-value=13 Score=38.26 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=10.6
Q ss_pred cCCcEEEEEEeccC
Q 019861 259 RPGGVFVGTTYIVD 272 (334)
Q Consensus 259 kpgG~lii~~~~~~ 272 (334)
..+|.+++.+.+.+
T Consensus 537 ~~~g~viiqT~~p~ 550 (679)
T PRK05580 537 EKPGEVLIQTYHPE 550 (679)
T ss_pred CCCCEEEEEeCCCC
Confidence 35789999887764
No 360
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=86.39 E-value=2.7 Score=37.98 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=45.7
Q ss_pred cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------CCC-CCCceEEEeCc
Q 019861 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFP-KDSIDAVHAGA 239 (334)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~-~~~fD~V~~~~ 239 (334)
+++|+-||.|.+...+...|. ..+.++|+++.+++..+.++.... ... ...+|+|+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence 689999999999999998874 467899999999998888764321 111 34689999754
No 361
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=86.35 E-value=17 Score=34.02 Aligned_cols=91 Identities=21% Similarity=0.220 Sum_probs=67.4
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-----CC----------CCCceEEEeCcccc
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-----FP----------KDSIDAVHAGAAIH 242 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-----~~----------~~~fD~V~~~~vl~ 242 (334)
..+|||.=+|+|.=+..++...+..+++.-|+|+.+++.+++++..... +. ...||+|=. .
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----D 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----D 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----C
Confidence 6799999999998877777766555899999999999999998775511 00 134444421 2
Q ss_pred CCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 243 CWSSPSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 243 h~~d~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
=+..|..++....+.++.||.+-++--...
T Consensus 129 PFGSPaPFlDaA~~s~~~~G~l~vTATD~a 158 (380)
T COG1867 129 PFGSPAPFLDAALRSVRRGGLLCVTATDTA 158 (380)
T ss_pred CCCCCchHHHHHHHHhhcCCEEEEEecccc
Confidence 234577899999999999999888665543
No 362
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=86.31 E-value=0.58 Score=30.44 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=22.5
Q ss_pred eCCCCCCCccccCCCCcccccccCCcccccccccccccccC
Q 019861 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (334)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~ 113 (334)
-||.||..+...... ....+.|+.||..+.....
T Consensus 2 FCp~Cg~~l~~~~~~-------~~~~~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 2 FCPKCGNMLIPKEGK-------EKRRFVCRKCGYEEPIEQK 35 (52)
T ss_pred CCCCCCCccccccCC-------CCCEEECCcCCCeEECCCc
Confidence 399999976554210 1137899999987765533
No 363
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=86.27 E-value=0.35 Score=35.47 Aligned_cols=32 Identities=34% Similarity=0.563 Sum_probs=23.1
Q ss_pred CceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (334)
....||.|+....... ..++|.|..|+..+..
T Consensus 35 a~y~CpfCgk~~vkR~---------a~GIW~C~~C~~~~AG 66 (90)
T PTZ00255 35 AKYFCPFCGKHAVKRQ---------AVGIWRCKGCKKTVAG 66 (90)
T ss_pred CCccCCCCCCCceeee---------eeEEEEcCCCCCEEeC
Confidence 4588999998543322 3379999999987743
No 364
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=86.24 E-value=0.29 Score=41.00 Aligned_cols=37 Identities=16% Similarity=0.471 Sum_probs=22.5
Q ss_pred ceeCCCCCCCccccCCCCcccc-cccCCcccccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIE-SAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~-~~~~~~~~C~~C~~~~~~~ 111 (334)
-+.||.|+.. ..... -.. ......++|.+||.+++..
T Consensus 6 y~~Cp~Cg~e-ev~hE---Vik~~g~~~lvrC~eCG~V~~~~ 43 (201)
T COG1326 6 YIECPSCGSE-EVSHE---VIKERGREPLVRCEECGTVHPAI 43 (201)
T ss_pred EEECCCCCcc-hhhHH---HHHhcCCceEEEccCCCcEeece
Confidence 4789999942 22110 011 1123579999999999664
No 365
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=86.20 E-value=0.51 Score=27.77 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=22.8
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCcccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (334)
...|+.|++++.... ...+..|..|+..++
T Consensus 3 ~~~C~~C~~~~i~~~---------~~~~~~C~~Cg~~~~ 32 (33)
T PF08792_consen 3 LKKCSKCGGNGIVNK---------EDDYEVCIFCGSSFP 32 (33)
T ss_pred ceEcCCCCCCeEEEe---------cCCeEEcccCCcEee
Confidence 357999999876633 226899999998774
No 366
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=86.16 E-value=1.4 Score=39.87 Aligned_cols=67 Identities=16% Similarity=0.349 Sum_probs=45.9
Q ss_pred CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHH
Q 019861 229 KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 308 (334)
Q Consensus 229 ~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~ 308 (334)
.+.||+|+.....-|+-.|. +.++++|||.|++.+.-. +......-...+ .+.+.++++
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKf-----mvdLrKEq~~~F-----------~~kv~eLA~ 278 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKF-----MVDLRKEQLQEF-----------VKKVKELAK 278 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchh-----heeCCHHHHHHH-----------HHHHHHHHH
Confidence 36799999988777766664 777899999999988632 111111111221 457899999
Q ss_pred hCCCcEEE
Q 019861 309 ACGLVDFK 316 (334)
Q Consensus 309 ~~Gf~~v~ 316 (334)
++||+.+.
T Consensus 279 ~aG~~p~~ 286 (289)
T PF14740_consen 279 AAGFKPVT 286 (289)
T ss_pred HCCCcccc
Confidence 99998654
No 367
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=85.96 E-value=3.7 Score=38.88 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=60.9
Q ss_pred CCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCCC---------------C--CCCCceEEEeCc
Q 019861 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN---------------F--PKDSIDAVHAGA 239 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~---------------~--~~~~fD~V~~~~ 239 (334)
+.++||.=+|+|-=+..++.. .....|+.-|+|+.+++..++++..... + ....||+|=..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD- 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD- 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence 468999999999766666655 3235899999999999999988653321 1 34567766532
Q ss_pred cccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 240 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 240 vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
-+..|..+|..+.+.++.||.|.++.-..
T Consensus 129 ---PfGSp~pfldsA~~~v~~gGll~vTaTD~ 157 (377)
T PF02005_consen 129 ---PFGSPAPFLDSALQAVKDGGLLCVTATDT 157 (377)
T ss_dssp ----SS--HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred ---CCCCccHhHHHHHHHhhcCCEEEEecccc
Confidence 23467899999999999999999876543
No 368
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=85.92 E-value=0.33 Score=35.63 Aligned_cols=32 Identities=25% Similarity=0.630 Sum_probs=23.1
Q ss_pred CceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (334)
....||.|+....... ..++|.|..|+..+..
T Consensus 34 a~y~CpfCgk~~vkR~---------a~GIW~C~~C~~~~AG 65 (91)
T TIGR00280 34 AKYVCPFCGKKTVKRG---------STGIWTCRKCGAKFAG 65 (91)
T ss_pred cCccCCCCCCCceEEE---------eeEEEEcCCCCCEEeC
Confidence 4588999998543322 3479999999987743
No 369
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=85.27 E-value=1.5 Score=38.40 Aligned_cols=49 Identities=20% Similarity=0.185 Sum_probs=31.2
Q ss_pred HHHcccCCCCC--CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 019861 168 LMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY 218 (334)
Q Consensus 168 ~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~ 218 (334)
.+.+.++..++ .+|||.-+|-|.-+..++..|. +|+++|-|+.+....+
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~ 114 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLK 114 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHH
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHH
Confidence 45555554444 4899999999999998888775 9999999996555444
No 370
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=84.79 E-value=0.54 Score=30.58 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=18.8
Q ss_pred eeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
--||.||+. .... ....+.|..||..+
T Consensus 21 ~fCP~Cg~~-~m~~---------~~~r~~C~~Cgyt~ 47 (50)
T PRK00432 21 KFCPRCGSG-FMAE---------HLDRWHCGKCGYTE 47 (50)
T ss_pred CcCcCCCcc-hhec---------cCCcEECCCcCCEE
Confidence 369999986 2222 12679999999765
No 371
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=84.48 E-value=14 Score=33.88 Aligned_cols=126 Identities=8% Similarity=0.087 Sum_probs=66.3
Q ss_pred HHcccCCCCCCcEEEECCCc-CHHH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-CC---C--CCCceEEEeCcc
Q 019861 169 MKGYLKPVLGGNIIDASCGS-GLFS-RIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NF---P--KDSIDAVHAGAA 240 (334)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~-G~~~-~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~---~--~~~fD~V~~~~v 240 (334)
....++..++.+|+-+|+|. |... ..+...+ ...++.+|.++...+...+.+.... ++ . -...|+|+..-.
T Consensus 169 a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~ 247 (311)
T cd05213 169 AEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATG 247 (311)
T ss_pred HHHHhCCccCCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCC
Confidence 33333445688999999976 4332 3333333 2478999999775543333332210 11 0 135799998765
Q ss_pred ccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861 241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 309 (334)
Q Consensus 241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~ 309 (334)
-.+. ...+..+.+....+|.+++-..+.... .+.. .. ......++.++|+++.++
T Consensus 248 ~~~~---~~~~~~~~~~~~~~~~~viDlavPrdi---~~~v-------~~-l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 248 APHY---AKIVERAMKKRSGKPRLIVDLAVPRDI---EPEV-------GE-LEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred CCch---HHHHHHHHhhCCCCCeEEEEeCCCCCC---chhh-------cc-CCCcEEEEHHHhHHHHHH
Confidence 4432 333444433333346666644443222 1110 00 124567888999888765
No 372
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=84.47 E-value=0.43 Score=35.03 Aligned_cols=32 Identities=22% Similarity=0.612 Sum_probs=23.0
Q ss_pred CceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (334)
....||.|+....... ..++|.|..|+..+..
T Consensus 35 a~y~CpfCgk~~vkR~---------a~GIW~C~~C~~~~AG 66 (90)
T PRK03976 35 AKHVCPVCGRPKVKRV---------GTGIWECRKCGAKFAG 66 (90)
T ss_pred cCccCCCCCCCceEEE---------EEEEEEcCCCCCEEeC
Confidence 4588999987543322 3379999999987743
No 373
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=84.36 E-value=0.77 Score=28.99 Aligned_cols=28 Identities=14% Similarity=0.399 Sum_probs=20.5
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
.+.|..||....... ....+|+.||+--
T Consensus 2 ~Y~C~~Cg~~~~~~~----------~~~irC~~CG~rI 29 (44)
T smart00659 2 IYICGECGRENEIKS----------KDVVRCRECGYRI 29 (44)
T ss_pred EEECCCCCCEeecCC----------CCceECCCCCceE
Confidence 478999999755432 2579999999754
No 374
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=84.20 E-value=1.1 Score=29.80 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=24.7
Q ss_pred cCCCceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
+....+.|--|+..+..... ...+|..||+..
T Consensus 16 ~~~miYiCgdC~~en~lk~~----------D~irCReCG~RI 47 (62)
T KOG3507|consen 16 TATMIYICGDCGQENTLKRG----------DVIRCRECGYRI 47 (62)
T ss_pred cccEEEEeccccccccccCC----------CcEehhhcchHH
Confidence 34567899999998766542 689999999754
No 375
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.18 E-value=1.5 Score=41.48 Aligned_cols=55 Identities=7% Similarity=-0.111 Sum_probs=39.6
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~ 224 (334)
...+.++..++.+||-|.+|.-..+.. ...+| .+|++||+|+......+-++...
T Consensus 26 vD~~aL~i~~~d~vl~ItSaG~N~L~y-L~~~P-~~I~aVDlNp~Q~aLleLKlAai 80 (380)
T PF11899_consen 26 VDMEALNIGPDDRVLTITSAGCNALDY-LLAGP-KRIHAVDLNPAQNALLELKLAAI 80 (380)
T ss_pred HHHHHhCCCCCCeEEEEccCCchHHHH-HhcCC-ceEEEEeCCHHHHHHHHHHHHHH
Confidence 345566777889999998875554544 55554 59999999998887776555443
No 376
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=84.14 E-value=10 Score=35.31 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=53.6
Q ss_pred CCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeC---CHHHHHHHHHHHhcCC-----CC----CCCCceEEEeCcccc
Q 019861 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDY---SENMLKQCYEFVQQES-----NF----PKDSIDAVHAGAAIH 242 (334)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~---s~~~~~~a~~~~~~~~-----~~----~~~~fD~V~~~~vl~ 242 (334)
.++.+||=+|+|. |.++..+++.. ..++++++. ++.-++.+++.-.... .+ ..+.+|+|+-.-
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~--- 246 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEAT--- 246 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECc---
Confidence 4578999999865 55566666553 348999986 5666666654211100 00 113467666543
Q ss_pred CCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 243 CWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 243 h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
..+ ..+.+..+.|++||.+++...
T Consensus 247 --g~~-~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 247 --GVP-PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred --CCH-HHHHHHHHHccCCcEEEEEec
Confidence 222 367888999999999876543
No 377
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=83.39 E-value=11 Score=34.99 Aligned_cols=90 Identities=18% Similarity=0.104 Sum_probs=56.1
Q ss_pred CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----C-C--------CCCCCceEEEeC
Q 019861 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----S-N--------FPKDSIDAVHAG 238 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----~-~--------~~~~~fD~V~~~ 238 (334)
...++.+||-.|+|. |..+..+++.....+++++|.++...+.+++.-... . . .....+|+|+-.
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 345678999998754 455555665532225999999998888876531100 0 0 112347877643
Q ss_pred ccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
...+ ..+....+.|++||++++.-.
T Consensus 253 -----~g~~-~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 253 -----VGRP-ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -----CCCH-HHHHHHHHHhccCCEEEEECC
Confidence 3333 357778889999999887543
No 378
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=83.08 E-value=2 Score=41.53 Aligned_cols=92 Identities=23% Similarity=0.228 Sum_probs=68.3
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC-------------------CCCCCCceEE
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES-------------------NFPKDSIDAV 235 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~-------------------~~~~~~fD~V 235 (334)
.++.+|||.=|++|.-+...+...+ -..+++.|.++..++..+++..... +-....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 3467999999999987776666543 3578999999999998887765431 1224678888
Q ss_pred EeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
-.. -+..+..+|+...+.++.||.|.++.-..
T Consensus 188 DLD----PyGs~s~FLDsAvqav~~gGLL~vT~TD~ 219 (525)
T KOG1253|consen 188 DLD----PYGSPSPFLDSAVQAVRDGGLLCVTCTDM 219 (525)
T ss_pred ecC----CCCCccHHHHHHHHHhhcCCEEEEEecch
Confidence 642 23456789999999999999999866543
No 379
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=82.96 E-value=0.76 Score=28.52 Aligned_cols=24 Identities=33% Similarity=0.713 Sum_probs=17.7
Q ss_pred eeCCCCCCCccccCCCCcccccccCCcccccccc
Q 019861 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~ 105 (334)
-.||.|+.++..... +...|+.|+
T Consensus 18 ~~Cp~C~~PL~~~k~----------g~~~Cv~C~ 41 (41)
T PF06677_consen 18 EHCPDCGTPLMRDKD----------GKIYCVSCG 41 (41)
T ss_pred CccCCCCCeeEEecC----------CCEECCCCC
Confidence 469999999887321 457898885
No 380
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=82.93 E-value=1.5 Score=39.66 Aligned_cols=88 Identities=20% Similarity=0.330 Sum_probs=61.4
Q ss_pred CCcEEEECCCcCHHHH-HHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCcccc
Q 019861 178 GGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGAAIH 242 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~-~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~vl~ 242 (334)
+..|+|+=+|-|+|+. .+..++. ..|+++|.++..++..++.++... +-++...|-|....
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL--- 270 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL--- 270 (351)
T ss_pred cchhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecc---
Confidence 4799999999999988 7777774 689999999999999887765432 23456667666554
Q ss_pred CCCCHHHHHHHHHHcccCC-c-EEEEEEec
Q 019861 243 CWSSPSTGVAEISRVLRPG-G-VFVGTTYI 270 (334)
Q Consensus 243 h~~d~~~~L~~i~r~Lkpg-G-~lii~~~~ 270 (334)
+|.-++-+-....+|+|. | .+-+....
T Consensus 271 -lPSse~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 271 -LPSSEQGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred -ccccccchHHHHHHhhhcCCcEEEEeccc
Confidence 344444455566778774 4 44444433
No 381
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=82.77 E-value=0.89 Score=30.51 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=29.0
Q ss_pred ccCCCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccC
Q 019861 66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (334)
Q Consensus 66 ~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~ 113 (334)
.+......||-|+......++ ....+.|..||..-..+.|
T Consensus 6 ~S~F~~VkCp~C~n~q~vFsh--------a~t~V~C~~Cg~~L~~PtG 45 (59)
T PRK00415 6 RSRFLKVKCPDCGNEQVVFSH--------ASTVVRCLVCGKTLAEPTG 45 (59)
T ss_pred CCeEEEEECCCCCCeEEEEec--------CCcEEECcccCCCcccCCC
Confidence 345566889999997665553 3367999999988766644
No 382
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=82.68 E-value=1.1 Score=26.08 Aligned_cols=26 Identities=19% Similarity=0.548 Sum_probs=16.6
Q ss_pred eCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
.|..||....... ....+|+.||+-.
T Consensus 2 ~C~~Cg~~~~~~~----------~~~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKP----------GDPIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BST----------SSTSSBSSSS-SE
T ss_pred CCCcCCCeeEcCC----------CCcEECCcCCCeE
Confidence 5888888655332 2568999998744
No 383
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.33 E-value=0.61 Score=35.66 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=23.1
Q ss_pred cCCcccccccccccccccCccccccc
Q 019861 95 AGSSLQCNTCKKTYSGVGTHFDMTAA 120 (334)
Q Consensus 95 ~~~~~~C~~C~~~~~~~~~~~~~~~~ 120 (334)
..+.+.|+.||++|+..+|++|.+-.
T Consensus 95 ~EG~l~CpetG~vfpI~~GIPNMLL~ 120 (124)
T KOG1088|consen 95 IEGELVCPETGRVFPISDGIPNMLLS 120 (124)
T ss_pred ccceEecCCCCcEeecccCCcccccC
Confidence 55789999999999999999998754
No 384
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=82.00 E-value=13 Score=33.27 Aligned_cols=88 Identities=19% Similarity=0.123 Sum_probs=54.3
Q ss_pred CCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC----CC--------CCCCCceEEEeCcccc
Q 019861 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE----SN--------FPKDSIDAVHAGAAIH 242 (334)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~----~~--------~~~~~fD~V~~~~vl~ 242 (334)
.++.+||=+|+|. |.++..+++......++++|.++.-++.+++.-... .. .....+|+|+-.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~---- 194 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEF---- 194 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEEC----
Confidence 4678999998864 445555555532224888998888777776531100 00 012347777643
Q ss_pred CCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 243 CWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 243 h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
...+ ..++...+.|+++|++++.-.
T Consensus 195 -~G~~-~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 195 -SGAT-AAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred -CCCh-HHHHHHHHHhcCCCEEEEecc
Confidence 2223 357788999999999887653
No 385
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=81.81 E-value=0.91 Score=34.75 Aligned_cols=32 Identities=16% Similarity=0.452 Sum_probs=22.9
Q ss_pred CceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (334)
.+..||.||....-.. ..-..||.||..|...
T Consensus 8 tKR~Cp~CG~kFYDLn----------k~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLN----------KDPIVCPKCGTEFPPE 39 (108)
T ss_pred CcccCCCCcchhccCC----------CCCccCCCCCCccCcc
Confidence 3568999999753222 1347799999998776
No 386
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=81.44 E-value=3.4 Score=35.69 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=64.7
Q ss_pred HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------------------
Q 019861 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------------- 224 (334)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------------- 224 (334)
+.+....++.+.++...+|+--|.|..+..+.++.+...++++|-+|-+.+.|.....+.
T Consensus 31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~ 110 (303)
T KOG2782|consen 31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIA 110 (303)
T ss_pred ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHH
Confidence 345677888889999999999999999999999988888999999998877776543211
Q ss_pred -CCCCCCCceEEEeCccccCC--CCHHH
Q 019861 225 -SNFPKDSIDAVHAGAAIHCW--SSPST 249 (334)
Q Consensus 225 -~~~~~~~fD~V~~~~vl~h~--~d~~~ 249 (334)
..+.+..+|.|++......+ .+|+.
T Consensus 111 ~~gl~~~~vDGiLmDlGcSSMQ~d~peR 138 (303)
T KOG2782|consen 111 DTGLLDVGVDGILMDLGCSSMQVDNPER 138 (303)
T ss_pred HhCCCcCCcceEEeecCccccccCCccc
Confidence 13567899999987655443 35543
No 387
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.42 E-value=0.83 Score=35.35 Aligned_cols=44 Identities=16% Similarity=0.395 Sum_probs=27.7
Q ss_pred CceeCCCCCCCcccc--CCCCcccccccCCcccccccccccccccC
Q 019861 70 NVLACPICYKPLTWI--GDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~--~~~~~~~~~~~~~~~~C~~C~~~~~~~~~ 113 (334)
....||+|..+..-. .+.-+..+-....--.|.+||+.|++.+.
T Consensus 38 ti~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwter 83 (160)
T COG4306 38 TITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTER 83 (160)
T ss_pred HHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHHH
Confidence 467899999865322 21122233334455789999999988643
No 388
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=81.34 E-value=1.3 Score=26.66 Aligned_cols=29 Identities=21% Similarity=0.628 Sum_probs=19.0
Q ss_pred eeCCCCCCCc--cccCCCCcccccccCCcccccccc
Q 019861 72 LACPICYKPL--TWIGDSSLSIESAAGSSLQCNTCK 105 (334)
Q Consensus 72 l~CPiC~~~l--~~~~~~~~~~~~~~~~~~~C~~C~ 105 (334)
+.||.|++.. ...+. .....+.++|..|+
T Consensus 6 v~CP~C~s~~~v~k~G~-----~~~G~qryrC~~C~ 36 (36)
T PF03811_consen 6 VHCPRCQSTEGVKKNGK-----SPSGHQRYRCKDCR 36 (36)
T ss_pred eeCCCCCCCCcceeCCC-----CCCCCEeEecCcCC
Confidence 6799999965 33331 11244689999885
No 389
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=81.25 E-value=12 Score=35.92 Aligned_cols=87 Identities=10% Similarity=-0.008 Sum_probs=54.1
Q ss_pred CCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCCC--CCCceEEEeCccccCCCCHHHHHH
Q 019861 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP--KDSIDAVHAGAAIHCWSSPSTGVA 252 (334)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~--~~~fD~V~~~~vl~h~~d~~~~L~ 252 (334)
.++.+|+=+|+|. |......++.. ..+|+++|.++...+.|+..-....... -..+|+|+..- ..+..+-.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~at-----G~~~~i~~ 273 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTT-----GNKDIITG 273 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECC-----CCHHHHHH
Confidence 4688999999997 55444444332 3489999999887777664211000000 13468887642 34443333
Q ss_pred HHHHcccCCcEEEEEE
Q 019861 253 EISRVLRPGGVFVGTT 268 (334)
Q Consensus 253 ~i~r~LkpgG~lii~~ 268 (334)
+..+.+++||+++...
T Consensus 274 ~~l~~mk~GgilvnvG 289 (413)
T cd00401 274 EHFEQMKDGAIVCNIG 289 (413)
T ss_pred HHHhcCCCCcEEEEeC
Confidence 4588999999987655
No 390
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.24 E-value=0.68 Score=40.17 Aligned_cols=17 Identities=12% Similarity=0.046 Sum_probs=12.4
Q ss_pred cCCcccccccccccccc
Q 019861 95 AGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 95 ~~~~~~C~~C~~~~~~~ 111 (334)
...++.||+||......
T Consensus 45 ~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 45 FYEVWVCPHCGYAAFEE 61 (214)
T ss_pred eeeEEECCCCCCccccc
Confidence 44679999999766443
No 391
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=80.86 E-value=13 Score=34.82 Aligned_cols=89 Identities=24% Similarity=0.221 Sum_probs=55.2
Q ss_pred CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----C-C-------CCCCCceEEEeCc
Q 019861 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----S-N-------FPKDSIDAVHAGA 239 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----~-~-------~~~~~fD~V~~~~ 239 (334)
...++.+||=.|+|. |.++..+++.....+++++|.++..++.+++.-... . . ...+.+|+|+-.-
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 445678888898764 455555555532226999999998888876531100 0 0 1122577776432
Q ss_pred cccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 240 AIHCWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 240 vl~h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
..+ ..+....+.|+++|.+++..
T Consensus 268 -----G~~-~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 268 -----GSV-PALETAYEITRRGGTTVTAG 290 (371)
T ss_pred -----CCh-HHHHHHHHHHhcCCEEEEEc
Confidence 222 35777888999999988754
No 392
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=80.75 E-value=4.2 Score=36.39 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=29.6
Q ss_pred CCCCcEEEECCCcCHHHHHHHHcC-----CCCeEEEEeCCH
Q 019861 176 VLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSE 211 (334)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~giD~s~ 211 (334)
.+...++|+|||.|.++.+++... ....++.||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 456799999999999999998875 345888999754
No 393
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=80.44 E-value=0.47 Score=34.33 Aligned_cols=39 Identities=18% Similarity=0.431 Sum_probs=18.0
Q ss_pred CceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (334)
..|.||.|+........- ........+.|..||..|...
T Consensus 21 ~~F~CPfC~~~~sV~v~i---dkk~~~~~~~C~~Cg~~~~~~ 59 (81)
T PF05129_consen 21 KVFDCPFCNHEKSVSVKI---DKKEGIGILSCRVCGESFQTK 59 (81)
T ss_dssp S----TTT--SS-EEEEE---ETTTTEEEEEESSS--EEEEE
T ss_pred ceEcCCcCCCCCeEEEEE---EccCCEEEEEecCCCCeEEEc
Confidence 468999999754333210 112345689999999887555
No 394
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=80.41 E-value=1.3 Score=29.06 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=20.5
Q ss_pred ceeCCCCCCCccccCCCCcccccc-cCCcccccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESA-AGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~~~~~ 111 (334)
=+.||+||+.-..... .+.. ..--+.|+.|.+.....
T Consensus 4 Wi~CP~CgnKTR~kir----~DT~LkNfPlyCpKCK~EtlI~ 41 (55)
T PF14205_consen 4 WILCPICGNKTRLKIR----EDTVLKNFPLYCPKCKQETLID 41 (55)
T ss_pred EEECCCCCCccceeee----cCceeccccccCCCCCceEEEE
Confidence 3679999984321110 0011 11248999998765443
No 395
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.39 E-value=35 Score=31.31 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=30.8
Q ss_pred CCcEEEECCCcCHHHHHHHHcC--CCCeEEEEeCCHHHHHHH
Q 019861 178 GGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQC 217 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a 217 (334)
...|+.+|||.-.+...|...+ ....++-+|+++......
T Consensus 88 ~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 88 KKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred ceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 4689999999998888888876 445677778776655555
No 396
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.25 E-value=0.89 Score=34.08 Aligned_cols=29 Identities=31% Similarity=0.786 Sum_probs=22.1
Q ss_pred CceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (334)
....||+||..+.+ ..++|++|+......
T Consensus 5 ~~~~cPvcg~~~iV-------------TeL~c~~~etTVrg~ 33 (122)
T COG3877 5 VINRCPVCGRKLIV-------------TELKCSNCETTVRGN 33 (122)
T ss_pred CCCCCCccccccee-------------EEEecCCCCceEecc
Confidence 34679999998765 469999998765444
No 397
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=79.91 E-value=1.3 Score=25.92 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=15.7
Q ss_pred eeCCCCCCCccccCCCCcccccccCCccccccccc
Q 019861 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (334)
..|++||....... .-+.|+.||.
T Consensus 2 ~~C~~CGy~y~~~~-----------~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE-----------APWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCCc-----------CCCcCcCCCC
Confidence 57888887533221 4578888875
No 398
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=79.87 E-value=0.57 Score=30.02 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=24.3
Q ss_pred eCCCCCCCccccCCCCcccccccCCcccccc--ccccccccc
Q 019861 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNT--CKKTYSGVG 112 (334)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~ 112 (334)
.||.||+.......... .......+.+|.+ ||+.|....
T Consensus 1 ~CP~Cg~~a~ir~S~~~-s~~~~~~Y~qC~N~~Cg~tfv~~~ 41 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQL-SPLTRELYCQCTNPECGHTFVANL 41 (47)
T ss_pred CcCCCCCeeEEEEchhh-CcceEEEEEEECCCcCCCEEEEEE
Confidence 49999997644321111 1122346899999 999886653
No 399
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=79.66 E-value=8.2 Score=36.35 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=68.9
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------------------------
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------------------------- 225 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------------------------- 225 (334)
+.+.||.+|+.+.....+++.....+--|+++..+.+..+...-....
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~ 260 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGF 260 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccc
Confidence 468999999999999999988765667788888887777664322100
Q ss_pred -------------CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCc
Q 019861 226 -------------NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 277 (334)
Q Consensus 226 -------------~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~ 277 (334)
+++...+|. ..++-|+.+-..+.......++++|.+++.......+...
T Consensus 261 ~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~~p~gs 322 (364)
T KOG1269|consen 261 EHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRGLPEGS 322 (364)
T ss_pred hhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCcCCcCc
Confidence 122334444 5566777777778888889999999999877776544333
No 400
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.65 E-value=4.3 Score=32.82 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=25.1
Q ss_pred EECCCcC--HHHHHHH--HcCCCCeEEEEeCCHHHHHHHHHH
Q 019861 183 DASCGSG--LFSRIFA--KSGLFSLVVALDYSENMLKQCYEF 220 (334)
Q Consensus 183 DiGcG~G--~~~~~l~--~~~~~~~v~giD~s~~~~~~a~~~ 220 (334)
|||+..| .....+. ..++...++++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 456667999999999999888887
No 401
>PRK12495 hypothetical protein; Provisional
Probab=79.50 E-value=0.97 Score=38.75 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=24.2
Q ss_pred CceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (334)
..+.|+.||.++.... +..+|+.|+..+...
T Consensus 41 sa~hC~~CG~PIpa~p-----------G~~~Cp~CQ~~~~~~ 71 (226)
T PRK12495 41 TNAHCDECGDPIFRHD-----------GQEFCPTCQQPVTED 71 (226)
T ss_pred chhhcccccCcccCCC-----------CeeECCCCCCccccc
Confidence 3467999999988432 789999999887653
No 402
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=79.46 E-value=19 Score=33.49 Aligned_cols=88 Identities=13% Similarity=0.080 Sum_probs=57.2
Q ss_pred cCCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------C-------CCCCCceEE
Q 019861 173 LKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------N-------FPKDSIDAV 235 (334)
Q Consensus 173 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~-------~~~~~fD~V 235 (334)
....++.+||=.|+ |.|.++..+++.. ..++++++.++...+.+++.+.... . ...+.+|+|
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v 232 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIY 232 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEE
Confidence 34456889999997 3567777777663 3489999988887777653222110 0 112347777
Q ss_pred EeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
+-.- .. ..+....+.|++||++++.-
T Consensus 233 ~d~v-----G~--~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 233 FDNV-----GG--DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EECC-----CH--HHHHHHHHHhccCCEEEEEC
Confidence 6432 22 36788899999999988654
No 403
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=79.43 E-value=22 Score=35.08 Aligned_cols=114 Identities=15% Similarity=0.079 Sum_probs=73.1
Q ss_pred CCCCcHHHHHHHHcccCCC--CCCcEEEECCCcCHHHHHHHHc---C-CCCeEEEEeCCHHHHHHHHHHHh--cC--C--
Q 019861 158 GFPGPEKEFELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKS---G-LFSLVVALDYSENMLKQCYEFVQ--QE--S-- 225 (334)
Q Consensus 158 ~~~~~~~~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~---~-~~~~v~giD~s~~~~~~a~~~~~--~~--~-- 225 (334)
.+..|....+.+...+.+. ++..|.|.-||+|.++...... + ....++|.+....+...++.++. .. .
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~ 275 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANF 275 (501)
T ss_pred eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcccc
Confidence 3555667777766665543 4578999999999988765432 1 12468999999999988887532 10 0
Q ss_pred ---------C---CCCCCceEEEeCcc--------------------ccCC----CC-HHHHHHHHHHcccCCcEEEEEE
Q 019861 226 ---------N---FPKDSIDAVHAGAA--------------------IHCW----SS-PSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 226 ---------~---~~~~~fD~V~~~~v--------------------l~h~----~d-~~~~L~~i~r~LkpgG~lii~~ 268 (334)
. .....||.|+++-- +.|+ .+ -..++..+..+|++||+..+.-
T Consensus 276 ~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 276 NIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred CcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 0 11346888775320 1121 11 2367888899999999877666
Q ss_pred ecc
Q 019861 269 YIV 271 (334)
Q Consensus 269 ~~~ 271 (334)
+..
T Consensus 356 ~~g 358 (501)
T TIGR00497 356 FPG 358 (501)
T ss_pred cCC
Confidence 543
No 404
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=79.27 E-value=4.3 Score=36.21 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=42.3
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCCC----CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEE
Q 019861 191 FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP----KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265 (334)
Q Consensus 191 ~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~----~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~li 265 (334)
++..|.+.++..+|+|+|.++..++.+.+.-....... -..+|+|+..--+.. ...+|+++...+++|+.+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~---~~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSA---IEDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHH---HHHHHHHHHCGS-TTSEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHH---HHHHHHHhhhhcCCCcEEE
Confidence 45778888877899999999999888865321111111 134699987643222 2345666666666655443
No 405
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=79.14 E-value=1 Score=31.25 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=21.0
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
.-.||.||....... ....+.|+.||...
T Consensus 28 Sq~C~~CG~~~~~~~---------~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRR---------SGRVFTCPNCGFEM 56 (69)
T ss_pred ccCccCccccccccc---------ccceEEcCCCCCEE
Confidence 357999999755411 23689999999865
No 406
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=78.95 E-value=8 Score=34.96 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=49.7
Q ss_pred cHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC
Q 019861 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225 (334)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~ 225 (334)
|..+.+..... ...++..|||.=+|+|..+......+. .++|+|+++..++.+.+++....
T Consensus 208 P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r--~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 208 PLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR--RFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred hHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC--ceEEEecCHHHHHHHHHHHHhhc
Confidence 44555555555 445689999999999999999998887 99999999999999999877543
No 407
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=78.71 E-value=1.3 Score=35.09 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=27.0
Q ss_pred CCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccC
Q 019861 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (334)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~ 113 (334)
..+..||.|+... .... .......+-++|..|+..+....+
T Consensus 28 ~~~~~cP~C~s~~-~~k~---g~~~~~~qRyrC~~C~~tf~~~~~ 68 (129)
T COG3677 28 ITKVNCPRCKSSN-VVKI---GGIRRGHQRYKCKSCGSTFTVETG 68 (129)
T ss_pred cccCcCCCCCccc-eeeE---CCccccccccccCCcCcceeeecc
Confidence 3457899999976 2211 011113678999999998877644
No 408
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=78.65 E-value=0.91 Score=27.10 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=18.7
Q ss_pred eCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (334)
=||-|+.-|...... .... .|..|+..+...
T Consensus 3 FCp~C~nlL~p~~~~-------~~~~-~C~~C~Y~~~~~ 33 (35)
T PF02150_consen 3 FCPECGNLLYPKEDK-------EKRV-ACRTCGYEEPIS 33 (35)
T ss_dssp BETTTTSBEEEEEET-------TTTE-EESSSS-EEE-S
T ss_pred eCCCCCccceEcCCC-------ccCc-CCCCCCCccCCC
Confidence 499999977554311 1122 899999877543
No 409
>KOG3277 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.55 E-value=2.6 Score=34.04 Aligned_cols=91 Identities=14% Similarity=0.151 Sum_probs=43.7
Q ss_pred CCCCCCcccccCCCCChhhhhhhhhhe-ecccccccccCCCCCcccc-c-ccccCC--CceeCCCCCCCccccCCCCccc
Q 019861 17 GRLGNSRRCSVKPNPSPIFIRKFVAKI-RASSTAFVETKPSEPSFVE-N-EASTSK--NVLACPICYKPLTWIGDSSLSI 91 (334)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~-~~~~~~--~~l~CPiC~~~l~~~~~~~~~~ 91 (334)
+++.+.++|++... |+...+-+++.+ +++-++ ..+....++... . ...... -.+.|-+|+........ ..-
T Consensus 22 ~n~~~~a~~~~~~~-~~~l~r~r~a~~~~~s~s~-se~~~~~s~t~l~~~~~~kp~m~l~yTCkvCntRs~ktis--k~A 97 (165)
T KOG3277|consen 22 SNKPEDARLLSESA-RSSLFRNRPAALGTGSRSP-SEAAKTDSATVLTFFKVPKPRMQLAYTCKVCNTRSTKTIS--KQA 97 (165)
T ss_pred ccCccccccccCCc-chhhhhccccccccCcccc-cccCCCCcccccccccCCCcceEEEEEeeccCCccccccC--hhh
Confidence 44555667766543 444444444433 333333 333333333222 1 111122 24679999996543221 111
Q ss_pred ccccCCcccccccccccccc
Q 019861 92 ESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 92 ~~~~~~~~~C~~C~~~~~~~ 111 (334)
...+.-+++|++|+-.....
T Consensus 98 Y~~GvVivqC~gC~~~Hlia 117 (165)
T KOG3277|consen 98 YEKGVVIVQCPGCKNHHLIA 117 (165)
T ss_pred hhCceEEEECCCCccceeeh
Confidence 12234579999998655443
No 410
>PHA02998 RNA polymerase subunit; Provisional
Probab=78.54 E-value=0.98 Score=37.30 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=25.3
Q ss_pred ceeCCCCCCCccccCC-CCcccccccCCcccccccccccccc
Q 019861 71 VLACPICYKPLTWIGD-SSLSIESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~-~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (334)
...||.|++....... +--+.++....++.|..||+.+..+
T Consensus 143 ~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~wkpp 184 (195)
T PHA02998 143 NTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKHFKPP 184 (195)
T ss_pred CCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCccCCc
Confidence 4789999995432211 1111122245689999999988665
No 411
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=78.46 E-value=1.1 Score=40.97 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=24.4
Q ss_pred CceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (334)
..-.||+||+.-...... .....+..+++|.-|++.+...
T Consensus 186 ~~~~CPvCGs~P~~s~v~--~~~~~G~RyL~CslC~teW~~~ 225 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQ--IGTTQGLRYLHCNLCESEWHVV 225 (309)
T ss_pred CCCCCCCCCCcchhheee--ccCCCCceEEEcCCCCCccccc
Confidence 346799999953222100 0113356789999998877554
No 412
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=78.35 E-value=19 Score=33.73 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=49.4
Q ss_pred CCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCC--------C--CCCceEEEeCccccCC
Q 019861 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF--------P--KDSIDAVHAGAAIHCW 244 (334)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--------~--~~~fD~V~~~~vl~h~ 244 (334)
.++.+||-.|+|. |.++..+++.. ..++++++.+......+.+.+....-+ . .+.+|+|+-. .
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~-----~ 255 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDT-----V 255 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEEC-----C
Confidence 3577888898864 55555555553 347888887765433222222111000 0 0236666643 3
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEE
Q 019861 245 SSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 245 ~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
..+ ..+.+..+.|++||+++...
T Consensus 256 g~~-~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 256 SAV-HALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCH-HHHHHHHHHhcCCcEEEEeC
Confidence 333 35778889999999988754
No 413
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.33 E-value=19 Score=32.97 Aligned_cols=146 Identities=12% Similarity=0.062 Sum_probs=83.1
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC---------------------
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES--------------------- 225 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--------------------- 225 (334)
.+...+... -..|+-+|||-= ++...-..+ ...|+-+|. |+.++.-++.+.+..
T Consensus 84 ~~~~~~~~g-~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~ 159 (297)
T COG3315 84 FVRAALDAG-IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQ 159 (297)
T ss_pred HHHHHHHhc-ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHH
Confidence 334444443 568999999853 333322223 245666664 555555555444332
Q ss_pred -----CCCCCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCC-Cch-HHHHHHHHH-hhh-hcCc
Q 019861 226 -----NFPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPF-NLI-PFSRLLRQN-MMQ-ISGS 294 (334)
Q Consensus 226 -----~~~~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~-~~~-~~~~~~~~~-~~~-~~~~ 294 (334)
.|....-=++++-+++.+++.. .++|+.|...+.||-.++.......... ... ......... ... ....
T Consensus 160 ~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 239 (297)
T COG3315 160 ALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELV 239 (297)
T ss_pred HHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccce
Confidence 1234455678888888888754 4789999999999888888765221110 000 000000000 000 1123
Q ss_pred cCCCCHHHHHHHHHhCCCcEEEE
Q 019861 295 YTFLSEREIEDLCRACGLVDFKC 317 (334)
Q Consensus 295 ~~~~t~~~l~~ll~~~Gf~~v~~ 317 (334)
+...+..++..++.+.||.....
T Consensus 240 ~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 240 YFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred eccCCHHHHHHHHHhcCEEEEec
Confidence 44556899999999999987765
No 414
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=77.99 E-value=1 Score=27.73 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=13.9
Q ss_pred eeCCCCCCCccccCCCCcccccccCCcccccccc
Q 019861 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~ 105 (334)
.+||+|+..-..... ........+.|.+|+
T Consensus 4 ~pCP~CGG~DrFri~----~d~~~~G~~~C~~C~ 33 (40)
T PF08273_consen 4 GPCPICGGKDRFRIF----DDKDGRGTWICRQCG 33 (40)
T ss_dssp E--TTTT-TTTEEEE----TT----S-EEETTTT
T ss_pred CCCCCCcCccccccC----cCcccCCCEECCCCC
Confidence 579999995433211 111234789999994
No 415
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=77.90 E-value=10 Score=26.17 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCcEE
Q 019861 245 SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFV 324 (334)
Q Consensus 245 ~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~~~ 324 (334)
|.|.-.+++..+-|.+|..+.+..-+. -+.+++..++++.|++++.....+..+
T Consensus 11 P~Pll~~~~~l~~l~~G~~l~v~~d~~--------------------------~~~~di~~~~~~~g~~~~~~~~~~~~~ 64 (70)
T PF01206_consen 11 PMPLLKAKKALKELPPGEVLEVLVDDP--------------------------AAVEDIPRWCEENGYEVVEVEEEGGEY 64 (70)
T ss_dssp THHHHHHHHHHHTSGTT-EEEEEESST--------------------------THHHHHHHHHHHHTEEEEEEEESSSSE
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEECCc--------------------------cHHHHHHHHHHHCCCEEEEEEEeCCEE
Confidence 345555677777788888877655432 246799999999999988865454444
Q ss_pred EEEEEc
Q 019861 325 MFTATK 330 (334)
Q Consensus 325 ~~~a~K 330 (334)
.+..+|
T Consensus 65 ~i~I~K 70 (70)
T PF01206_consen 65 RILIRK 70 (70)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 444443
No 416
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=77.83 E-value=1.1 Score=40.87 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=23.4
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (334)
.-.||+||+.-...... ......+..++.|.-|++.|...
T Consensus 184 ~~~CPvCGs~P~~s~~~-~~~~~~G~RyL~CslC~teW~~~ 223 (305)
T TIGR01562 184 RTLCPACGSPPVASMVR-QGGKETGLRYLSCSLCATEWHYV 223 (305)
T ss_pred CCcCCCCCChhhhhhhc-ccCCCCCceEEEcCCCCCccccc
Confidence 45799999953221100 00012355788999998877553
No 417
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=77.69 E-value=1.8 Score=26.18 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=19.0
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (334)
..+||.|++.-.... ........+.|.+|+.
T Consensus 3 ~~pCP~CGG~DrFr~-----~d~~g~G~~~C~~Cg~ 33 (37)
T smart00778 3 HGPCPNCGGSDRFRF-----DDKDGRGTWFCSVCGA 33 (37)
T ss_pred ccCCCCCCCcccccc-----ccCCCCcCEEeCCCCC
Confidence 357999999532221 1122347899999963
No 418
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=77.65 E-value=1.5 Score=34.19 Aligned_cols=31 Identities=6% Similarity=0.004 Sum_probs=22.6
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (334)
+..||.||....-.. ..-..|+.||..|...
T Consensus 9 Kr~Cp~cg~kFYDLn----------k~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYDLN----------RRPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccccC----------CCCccCCCcCCccCcc
Confidence 568999999754322 1468999999988654
No 419
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=77.64 E-value=20 Score=24.70 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCcEE
Q 019861 245 SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFV 324 (334)
Q Consensus 245 ~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~~~ 324 (334)
|-|.-.+++..+-|++|+.+.+..-+. -+.+++..++++.|++++.....+..+
T Consensus 10 P~Pvl~~kkal~~l~~G~~l~V~~d~~--------------------------~a~~di~~~~~~~G~~~~~~~~~~~~~ 63 (69)
T cd03420 10 PGPILKLKKEIDKLQDGEQLEVKASDP--------------------------GFARDAQAWCKSTGNTLISLETEKGKV 63 (69)
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEECCc--------------------------cHHHHHHHHHHHcCCEEEEEEecCCEE
Confidence 455556777888888999777655432 146799999999999998755444344
Q ss_pred EEEEE
Q 019861 325 MFTAT 329 (334)
Q Consensus 325 ~~~a~ 329 (334)
.+..+
T Consensus 64 ~~~I~ 68 (69)
T cd03420 64 KAVIE 68 (69)
T ss_pred EEEEE
Confidence 44444
No 420
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=77.63 E-value=0.9 Score=38.33 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=24.8
Q ss_pred CCceeCCCCCCCccccCCC-Cc-ccccccCCccccccccccccc
Q 019861 69 KNVLACPICYKPLTWIGDS-SL-SIESAAGSSLQCNTCKKTYSG 110 (334)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~-~~-~~~~~~~~~~~C~~C~~~~~~ 110 (334)
...+.||+||+.+...... +. .-+........|.+||..+..
T Consensus 12 ~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~~D 55 (201)
T COG1779 12 ETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRSTD 55 (201)
T ss_pred eeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcccc
Confidence 3467899999966432210 00 112234467999999965543
No 421
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=77.58 E-value=23 Score=25.36 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCcEE
Q 019861 245 SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFV 324 (334)
Q Consensus 245 ~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~~~ 324 (334)
|-|.-.+++..+-|++|+.+.+..-+. -+.+++..++++.|.+++.....+..+
T Consensus 20 P~Pll~~kk~l~~l~~G~~l~V~~dd~--------------------------~~~~di~~~~~~~G~~~~~~~~~~g~~ 73 (81)
T PRK00299 20 PEPVMMVRKTVRNMQPGETLLIIADDP--------------------------ATTRDIPSFCRFMDHELLAQETEQLPY 73 (81)
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEeCCc--------------------------cHHHHHHHHHHHcCCEEEEEEecCCEE
Confidence 567777888888899999877744432 156789999999999998755544444
Q ss_pred EEEEEc
Q 019861 325 MFTATK 330 (334)
Q Consensus 325 ~~~a~K 330 (334)
.+..+|
T Consensus 74 ~~~I~k 79 (81)
T PRK00299 74 RYLIRK 79 (81)
T ss_pred EEEEEE
Confidence 444443
No 422
>PLN02740 Alcohol dehydrogenase-like
Probab=77.24 E-value=19 Score=33.95 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=54.9
Q ss_pred cCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----CC---C-------CCCCCceEEE
Q 019861 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----ES---N-------FPKDSIDAVH 236 (334)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----~~---~-------~~~~~fD~V~ 236 (334)
....++.+||=+|+|. |..+..+++.....+|+++|.++..++.+++.-.. .. . +..+.+|+|+
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvi 273 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSF 273 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEE
Confidence 3445688999999864 45555555553222699999999888887652110 00 0 1112477776
Q ss_pred eCccccCCCCHHHHHHHHHHcccCC-cEEEEEE
Q 019861 237 AGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT 268 (334)
Q Consensus 237 ~~~vl~h~~d~~~~L~~i~r~Lkpg-G~lii~~ 268 (334)
-. ...+ ..+....+.+++| |++++.-
T Consensus 274 d~-----~G~~-~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 274 EC-----AGNV-EVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred EC-----CCCh-HHHHHHHHhhhcCCCEEEEEc
Confidence 43 3333 3577777888886 8877644
No 423
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=77.03 E-value=1.6 Score=26.70 Aligned_cols=30 Identities=17% Similarity=0.403 Sum_probs=19.9
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (334)
.+.||.||........ .. ......|+.||.
T Consensus 5 ~y~C~~Cg~~fe~~~~--~~----~~~~~~CP~Cg~ 34 (41)
T smart00834 5 EYRCEDCGHTFEVLQK--IS----DDPLATCPECGG 34 (41)
T ss_pred EEEcCCCCCEEEEEEe--cC----CCCCCCCCCCCC
Confidence 4789999996543321 00 136788999997
No 424
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=76.66 E-value=11 Score=34.46 Aligned_cols=91 Identities=22% Similarity=0.254 Sum_probs=67.2
Q ss_pred CCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------CC--CCCCceEEEeCccccCCC
Q 019861 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------NF--PKDSIDAVHAGAAIHCWS 245 (334)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~~--~~~~fD~V~~~~vl~h~~ 245 (334)
++.+|.-||.|. |.....++-- ..+.|+-+|+|..-+++....+.... .+ .-...|+|+..-.+---.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak 245 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK 245 (371)
T ss_pred CCccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence 456888899887 5555555443 35699999999998888877665431 11 124689999877777777
Q ss_pred CHHHHHHHHHHcccCCcEEEEEE
Q 019861 246 SPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 246 d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
.|.-+.+++.+.||||++++=.-
T Consensus 246 aPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 246 APKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CceehhHHHHHhcCCCcEEEEEE
Confidence 89999999999999999876433
No 425
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=76.48 E-value=10 Score=34.32 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=54.8
Q ss_pred CcEEEECCCc--CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------CCCCCCceEEEeCccccCCCCHHHH
Q 019861 179 GNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NFPKDSIDAVHAGAAIHCWSSPSTG 250 (334)
Q Consensus 179 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~~~~~~fD~V~~~~vl~h~~d~~~~ 250 (334)
.+|+=+|.|- |.+...+...|+...++|.|.+...++.+.+.-..+. .......|+|+..-=++ ....+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~---~~~~~ 80 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE---ATEEV 80 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH---HHHHH
Confidence 4677788774 5778888888987788999999988877764311110 12345579998764222 22456
Q ss_pred HHHHHHcccCCcEEE
Q 019861 251 VAEISRVLRPGGVFV 265 (334)
Q Consensus 251 L~~i~r~LkpgG~li 265 (334)
++++...|++|..+.
T Consensus 81 l~~l~~~l~~g~iv~ 95 (279)
T COG0287 81 LKELAPHLKKGAIVT 95 (279)
T ss_pred HHHhcccCCCCCEEE
Confidence 777777777765443
No 426
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=76.39 E-value=1.6 Score=29.95 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=29.2
Q ss_pred cccCCCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccC
Q 019861 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (334)
Q Consensus 65 ~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~ 113 (334)
..+......||-|+......+. ....++|..||.+...+-|
T Consensus 13 p~s~Fl~VkCpdC~N~q~vFsh--------ast~V~C~~CG~~l~~PTG 53 (67)
T COG2051 13 PRSRFLRVKCPDCGNEQVVFSH--------ASTVVTCLICGTTLAEPTG 53 (67)
T ss_pred CCceEEEEECCCCCCEEEEecc--------CceEEEecccccEEEecCC
Confidence 3445556789999997665553 3468999999988766533
No 427
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=76.21 E-value=25 Score=32.21 Aligned_cols=90 Identities=14% Similarity=0.086 Sum_probs=55.0
Q ss_pred cCCCCCCcEEEECCCc-CHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHHHHhcC-----C-------C-CCCCCceEEEe
Q 019861 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQE-----S-------N-FPKDSIDAVHA 237 (334)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~-----~-------~-~~~~~fD~V~~ 237 (334)
+...++.+||=+|+|. |.++..+++.. ..+ ++++|.++...+.+++.-... . . .....+|+|+-
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid 237 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIE 237 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEE
Confidence 3445588998898753 44455555543 235 999999988887775431100 0 0 11235788774
Q ss_pred CccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 238 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 238 ~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
.. ..+ ..+....+.|+++|++++...
T Consensus 238 ~~-----g~~-~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 238 CS-----GNT-AARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CC-----CCH-HHHHHHHHHhhcCCEEEEEcC
Confidence 32 222 346677889999999887543
No 428
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=75.83 E-value=0.73 Score=42.00 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=15.0
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (334)
.-.||+||+.-.......... .+..++.|.-|++.+...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~--~G~R~L~Cs~C~t~W~~~ 210 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGER--EGKRYLHCSLCGTEWRFV 210 (290)
T ss_dssp -SS-TTT---EEEEEEE--------EEEEEETTT--EEE--
T ss_pred CCcCCCCCCcCceEEEecCCC--CccEEEEcCCCCCeeeec
Confidence 357999999532221000000 134788888888877553
No 429
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.35 E-value=1.6 Score=29.62 Aligned_cols=34 Identities=29% Similarity=0.607 Sum_probs=23.8
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (334)
...||+||.+..+.... .+.-+.|..|..+...+
T Consensus 7 ~v~CP~Cgkpv~w~~~s-------~frPFCSkRCklIDLg~ 40 (65)
T COG3024 7 TVPCPTCGKPVVWGEES-------PFRPFCSKRCKLIDLGE 40 (65)
T ss_pred cccCCCCCCcccccccC-------CcCcchhHhhhhcchhh
Confidence 35699999998774422 23557888898877654
No 430
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=74.86 E-value=5.3 Score=36.16 Aligned_cols=48 Identities=8% Similarity=0.096 Sum_probs=36.5
Q ss_pred CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~ 223 (334)
....+.+|+-||+|.-..+.++...- .++.++|+++..+...+-++..
T Consensus 60 ~~g~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 60 QLGIGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred hcCCCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHHHH
Confidence 34457899999999666777777664 4999999999988776655544
No 431
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=74.66 E-value=29 Score=31.73 Aligned_cols=85 Identities=22% Similarity=0.354 Sum_probs=53.9
Q ss_pred CCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------CC--CCCCceEEEeCccccC
Q 019861 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------NF--PKDSIDAVHAGAAIHC 243 (334)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~~--~~~~fD~V~~~~vl~h 243 (334)
++.+||-.|+|. |..+..+++......+++++.++...+.+++. .... .. ..+.+|+|+.....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~-- 241 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GADETVNLARDPLAAYAADKGDFDVVFEASGA-- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCCEEEcCCchhhhhhhccCCCccEEEECCCC--
Confidence 678888888765 55666666653222689999888877765542 1100 00 12347887764321
Q ss_pred CCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 244 WSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 244 ~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
...++++.+.|+++|+++...
T Consensus 242 ----~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 242 ----PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ----HHHHHHHHHHHhcCCEEEEEe
Confidence 235788899999999988754
No 432
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=74.51 E-value=25 Score=24.21 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCcEE
Q 019861 245 SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFV 324 (334)
Q Consensus 245 ~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~~~ 324 (334)
|-|.-.+++..+-|.+|+.+.+..-+. -+.+++..++++.|++++.....+..+
T Consensus 10 P~P~i~~k~~l~~l~~G~~l~V~~dd~--------------------------~s~~di~~~~~~~g~~~~~~~~~~~~~ 63 (69)
T cd03423 10 PEPVMMLHKKVRKMKPGDTLLVLATDP--------------------------STTRDIPKFCTFLGHELLAQETEDEPY 63 (69)
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEeCCC--------------------------chHHHHHHHHHHcCCEEEEEEEcCCEE
Confidence 455556677777888898777644432 256789999999999998755544444
Q ss_pred EEEEE
Q 019861 325 MFTAT 329 (334)
Q Consensus 325 ~~~a~ 329 (334)
.+..+
T Consensus 64 ~~~I~ 68 (69)
T cd03423 64 RYLIR 68 (69)
T ss_pred EEEEE
Confidence 44433
No 433
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=74.14 E-value=1.8 Score=39.83 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=23.0
Q ss_pred CCceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (334)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (334)
.....||.||++..... ...+.+.|.+||.+...
T Consensus 9 ~~~~~Cp~Cg~~~iv~d--------~~~Ge~vC~~CG~Vl~e 42 (310)
T PRK00423 9 EEKLVCPECGSDKLIYD--------YERGEIVCADCGLVIEE 42 (310)
T ss_pred ccCCcCcCCCCCCeeEE--------CCCCeEeecccCCcccc
Confidence 34468999998433222 13478999999987644
No 434
>PRK11524 putative methyltransferase; Provisional
Probab=73.61 E-value=5.4 Score=36.16 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=17.7
Q ss_pred HHHHHHHHHcccCCcEEEEE
Q 019861 248 STGVAEISRVLRPGGVFVGT 267 (334)
Q Consensus 248 ~~~L~~i~r~LkpgG~lii~ 267 (334)
...+.++.++|||||.+++.
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 46889999999999999885
No 435
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=73.18 E-value=2 Score=32.53 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=20.6
Q ss_pred eCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (334)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (334)
-||.||..|.... +.+.|+.|+..+..
T Consensus 2 fC~~Cg~~l~~~~-----------~~~~C~~C~~~~~~ 28 (104)
T TIGR01384 2 FCPKCGSLMTPKN-----------GVYVCPSCGYEKEK 28 (104)
T ss_pred CCcccCcccccCC-----------CeEECcCCCCcccc
Confidence 4999999885432 57999999977544
No 436
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=73.14 E-value=2.7 Score=22.78 Aligned_cols=8 Identities=25% Similarity=0.987 Sum_probs=4.9
Q ss_pred cccccccc
Q 019861 98 SLQCNTCK 105 (334)
Q Consensus 98 ~~~C~~C~ 105 (334)
.+.|++||
T Consensus 16 ~f~CPnCG 23 (24)
T PF07754_consen 16 PFPCPNCG 23 (24)
T ss_pred eEeCCCCC
Confidence 46666665
No 437
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=73.04 E-value=2.1 Score=34.64 Aligned_cols=47 Identities=17% Similarity=0.446 Sum_probs=28.6
Q ss_pred ceeCCCCCCCcccc--CCCCcccccccCCcccccccccccccccCcccc
Q 019861 71 VLACPICYKPLTWI--GDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDM 117 (334)
Q Consensus 71 ~l~CPiC~~~l~~~--~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~ 117 (334)
...||.|+.+..-. .+.-+..+.....-..|.+||+-|++.+..++.
T Consensus 39 I~~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt~~~L~a 87 (158)
T PF10083_consen 39 ITSCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWTENALEA 87 (158)
T ss_pred HHHCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCchHHHHHHH
Confidence 46799999975321 111222222233457899999999987554433
No 438
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=73.04 E-value=5.6 Score=36.40 Aligned_cols=94 Identities=10% Similarity=0.048 Sum_probs=57.7
Q ss_pred CCcEEEECCCcCHHHHHHHHcC--------------------CCCeEEEEeCCHH--HHHHHHHHHhcCC----------
Q 019861 178 GGNIIDASCGSGLFSRIFAKSG--------------------LFSLVVALDYSEN--MLKQCYEFVQQES---------- 225 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~--------------------~~~~v~giD~s~~--~~~~a~~~~~~~~---------- 225 (334)
..+||-||.|.|.-..+++... +...++.+|+.+- .+......+....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999986544444332 1148999999863 4444443333220
Q ss_pred --CCCC--------------------------CCceEEEeCcccc-----CCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861 226 --NFPK--------------------------DSIDAVHAGAAIH-----CWSSPSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 226 --~~~~--------------------------~~fD~V~~~~vl~-----h~~d~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
..+. ...|+|+..+.++ .+....++|..+-..++||..|+|.+--.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 0001 1355666555443 22344689999999999999988876554
No 439
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=72.90 E-value=27 Score=23.75 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCcEEE
Q 019861 246 SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVM 325 (334)
Q Consensus 246 d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~~~~ 325 (334)
.|.-.+.+..+-|.+|..+.+..-+. -+..++..++++.|++.+.....+..+.
T Consensus 11 ~Pl~~~~~~l~~l~~g~~l~v~~d~~--------------------------~~~~~i~~~~~~~g~~~~~~~~~~~~~~ 64 (69)
T cd00291 11 LPVLKTKKALEKLKSGEVLEVLLDDP--------------------------GAVEDIPAWAKETGHEVLEVEEEGGVYR 64 (69)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEecCC--------------------------cHHHHHHHHHHHcCCEEEEEEEeCCEEE
Confidence 44444555556678888877754432 1567899999999999877554443344
Q ss_pred EEEE
Q 019861 326 FTAT 329 (334)
Q Consensus 326 ~~a~ 329 (334)
+..+
T Consensus 65 i~i~ 68 (69)
T cd00291 65 ILIR 68 (69)
T ss_pred EEEE
Confidence 3333
No 440
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=72.85 E-value=44 Score=30.67 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=56.8
Q ss_pred cCCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------C-------CCCCCceEE
Q 019861 173 LKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------N-------FPKDSIDAV 235 (334)
Q Consensus 173 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~-------~~~~~fD~V 235 (334)
....++.+||=.|+ |.|.++..+++.. ..++++++.++...+.+++.+.... . ...+.+|+|
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v 225 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIY 225 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEE
Confidence 34556889998886 3466666666653 3488998888887777765222110 0 011357777
Q ss_pred EeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
+-. ... ..+.+..+.|+++|+++...
T Consensus 226 ~d~-----~g~--~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 226 FDN-----VGG--KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEC-----CCH--HHHHHHHHHhccCcEEEEec
Confidence 643 222 45788899999999988643
No 441
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=72.84 E-value=32 Score=32.02 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=61.4
Q ss_pred HHcccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCce
Q 019861 169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSID 233 (334)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD 233 (334)
.....+..++.+|.-+|||. |.....-+....-..++++|+++.-++.|++.-..+. ...++-.|
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d 256 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGAD 256 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCC
Confidence 33444566789999999986 4444443443324589999999999999987422111 11223344
Q ss_pred EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861 234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
.+ ++...+.. .++.....+.++|..++.-..
T Consensus 257 ~~-----~e~~G~~~-~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 257 YA-----FECVGNVE-VMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred EE-----EEccCCHH-HHHHHHHHHhcCCeEEEEecC
Confidence 44 45555555 688888888889987775443
No 442
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=72.63 E-value=1.7 Score=33.96 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=13.1
Q ss_pred cCCcccccccccccccc
Q 019861 95 AGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 95 ~~~~~~C~~C~~~~~~~ 111 (334)
....+.|+.||..+...
T Consensus 28 ~~~~~~C~~CGe~~~~~ 44 (127)
T TIGR03830 28 GVPGWYCPACGEELLDP 44 (127)
T ss_pred eeeeeECCCCCCEEEcH
Confidence 55678999999877554
No 443
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=72.53 E-value=39 Score=30.58 Aligned_cols=87 Identities=15% Similarity=0.102 Sum_probs=55.9
Q ss_pred cCCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------C-------CCCCCceEEE
Q 019861 173 LKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------N-------FPKDSIDAVH 236 (334)
Q Consensus 173 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~-------~~~~~fD~V~ 236 (334)
....++.+||=.|. |.|..+..+++.. ..++++++-++...+.+++. .... . ...+.+|+|+
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~-Ga~~vi~~~~~~~~~~v~~~~~~gvd~vl 216 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKEL-GFDAVFNYKTVSLEEALKEAAPDGIDCYF 216 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-CCCEEEeCCCccHHHHHHHHCCCCcEEEE
Confidence 34456788888874 4466666666663 34899999888877777652 2110 0 1123578777
Q ss_pred eCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
-.- .. ..+....+.|+++|+++...
T Consensus 217 d~~-----g~--~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 217 DNV-----GG--EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred ECC-----CH--HHHHHHHHhhccCCEEEEEc
Confidence 432 22 45788899999999987643
No 444
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=72.45 E-value=13 Score=35.19 Aligned_cols=104 Identities=12% Similarity=0.070 Sum_probs=68.5
Q ss_pred HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH----------HhcCC--------CCC-
Q 019861 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF----------VQQES--------NFP- 228 (334)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~----------~~~~~--------~~~- 228 (334)
.+.+.++..++....|+|.|.|....+++..+....-+|+++....-+.+..+ +.... .|-
T Consensus 183 si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~ 262 (419)
T KOG3924|consen 183 SIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD 262 (419)
T ss_pred HHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC
Confidence 44455677788999999999999998888876555677888766444433322 11110 111
Q ss_pred -------CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 229 -------KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 229 -------~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
....++|+++.+... ++...-+.++..-+++|-+++-..+...
T Consensus 263 ~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 263 PKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 235788888876442 2333345688888899999988777664
No 445
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=72.44 E-value=31 Score=30.46 Aligned_cols=88 Identities=22% Similarity=0.251 Sum_probs=55.0
Q ss_pred CCCCCCcEEEECCCc-CHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHHHHhcCC-------CCCCCCceEEEeCccccCC
Q 019861 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQES-------NFPKDSIDAVHAGAAIHCW 244 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~-------~~~~~~fD~V~~~~vl~h~ 244 (334)
...++.+||-.|+|. |..+..+++.. ... +++++.+++..+.+++.-.... ......+|+|+....
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~---- 168 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASG---- 168 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccC----
Confidence 345678888888764 55555555553 235 9999998888776665320111 012345888875421
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEE
Q 019861 245 SSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 245 ~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
. ...+.+..+.|+++|.++...
T Consensus 169 -~-~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 -S-PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred -C-hHHHHHHHHHhcCCcEEEEEe
Confidence 1 235778899999999987643
No 446
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=72.01 E-value=2.9 Score=31.45 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=23.7
Q ss_pred CCceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (334)
...+.||.|+.. ..... ... ......|+.||..+...
T Consensus 19 pt~f~CP~Cge~-~v~v~----~~k-~~~h~~C~~CG~y~~~~ 55 (99)
T PRK14892 19 PKIFECPRCGKV-SISVK----IKK-NIAIITCGNCGLYTEFE 55 (99)
T ss_pred CcEeECCCCCCe-Eeeee----cCC-CcceEECCCCCCccCEE
Confidence 357899999963 22111 111 34689999999877554
No 447
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=71.84 E-value=17 Score=35.80 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=56.9
Q ss_pred CCcEEEECCCcCHHHHHHHHc----CCCCeEEEEeCCHHHHHHHHHH-HhcC-------------CCCCCCCceEEEeCc
Q 019861 178 GGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEF-VQQE-------------SNFPKDSIDAVHAGA 239 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~-~~~~-------------~~~~~~~fD~V~~~~ 239 (334)
...|+-+|.|-|-+.....++ ....+++++|-+++++...... +... .+.|....|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 457899999999876554332 3356899999999887766542 1111 12234678887752
Q ss_pred cccCCCCH---HHHHHHHHHcccCCcEEEE
Q 019861 240 AIHCWSSP---STGVAEISRVLRPGGVFVG 266 (334)
Q Consensus 240 vl~h~~d~---~~~L~~i~r~LkpgG~lii 266 (334)
.|-.+.|- ..-|..+-+.|||+|+.+=
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 22333322 3568999999999987654
No 448
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=71.75 E-value=30 Score=23.86 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCcEE
Q 019861 245 SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFV 324 (334)
Q Consensus 245 ~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~~~ 324 (334)
|-|.-.+++..+-|++|..+.+..-+. -+.+++..++++.|++++.....+..+
T Consensus 10 P~Pvi~~kkal~~l~~G~~l~V~~d~~--------------------------~s~~ni~~~~~~~g~~v~~~~~~~~~~ 63 (69)
T cd03422 10 PYPAIATLEALPSLKPGEILEVISDCP--------------------------QSINNIPIDARNHGYKVLAIEQSGPTI 63 (69)
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEecCc--------------------------hHHHHHHHHHHHcCCEEEEEEecCCEE
Confidence 455556677777888888777644332 256789999999999998754444444
Q ss_pred EEEEE
Q 019861 325 MFTAT 329 (334)
Q Consensus 325 ~~~a~ 329 (334)
.+..+
T Consensus 64 ~~~i~ 68 (69)
T cd03422 64 RYLIQ 68 (69)
T ss_pred EEEEE
Confidence 44444
No 449
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=71.65 E-value=2.3 Score=34.31 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=24.7
Q ss_pred eCCCCCCCccccCCCCcc-cccccCCccccccccccccccc
Q 019861 73 ACPICYKPLTWIGDSSLS-IESAAGSSLQCNTCKKTYSGVG 112 (334)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~-~~~~~~~~~~C~~C~~~~~~~~ 112 (334)
.||.|+++-....++... .+.....--.|++||.-|..-+
T Consensus 2 ~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTTfE 42 (156)
T COG1327 2 KCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTTFE 42 (156)
T ss_pred CCCCCCCCCCeeeecccccccchhhhhhcccccccccchhh
Confidence 699999975443322221 2222345678999999886643
No 450
>PLN02827 Alcohol dehydrogenase-like
Probab=71.40 E-value=38 Score=31.90 Aligned_cols=89 Identities=15% Similarity=0.085 Sum_probs=53.0
Q ss_pred CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----CC---C-------CCCCCceEEEe
Q 019861 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----ES---N-------FPKDSIDAVHA 237 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----~~---~-------~~~~~fD~V~~ 237 (334)
...++.+||-+|+|. |.++..+++......++++|.++...+.+++.-.. .. . ...+.+|+|+-
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 269 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFE 269 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEE
Confidence 345688999998754 44555555543223588999888877777542110 00 0 01124677664
Q ss_pred CccccCCCCHHHHHHHHHHcccCC-cEEEEEE
Q 019861 238 GAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT 268 (334)
Q Consensus 238 ~~vl~h~~d~~~~L~~i~r~Lkpg-G~lii~~ 268 (334)
. ...+ ..+....+.|++| |++++.-
T Consensus 270 ~-----~G~~-~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 270 C-----VGDT-GIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred C-----CCCh-HHHHHHHHhhccCCCEEEEEC
Confidence 3 2333 2467788889998 9987643
No 451
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=71.23 E-value=35 Score=31.58 Aligned_cols=92 Identities=22% Similarity=0.251 Sum_probs=54.9
Q ss_pred CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCC------------------CCCCceE
Q 019861 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF------------------PKDSIDA 234 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~------------------~~~~fD~ 234 (334)
...++.+||-+|+|. |..+..+++.. ..+++++|.++..++.+++. .....+ ....+|.
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~-Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~ 240 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGF-GADLTLNPKDKSAREVKKLIKAFAKARGLRS 240 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh-CCceEecCccccHHHHHHHHHhhcccCCCCC
Confidence 445688999999865 55555566553 34899999999888877652 211000 0112331
Q ss_pred EEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 235 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 235 V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
. ...+++....+ ..+....+.|++||++++...
T Consensus 241 ~-~d~v~d~~g~~-~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 241 T-GWKIFECSGSK-PGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred C-cCEEEECCCCh-HHHHHHHHHHhcCCeEEEECc
Confidence 0 00123444333 356777889999999887643
No 452
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=71.21 E-value=1.8 Score=32.20 Aligned_cols=37 Identities=14% Similarity=0.376 Sum_probs=24.0
Q ss_pred ceeCCCCCCCccccCCCCcccc-cccCCcccccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIE-SAAGSSLQCNTCKKTYSGV 111 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~-~~~~~~~~C~~C~~~~~~~ 111 (334)
.|.||.|++....... +. ......+.|..||..+--.
T Consensus 22 ~FtCp~Cghe~vs~ct----vkk~~~~g~~~Cg~CGls~e~e 59 (104)
T COG4888 22 TFTCPRCGHEKVSSCT----VKKTVNIGTAVCGNCGLSFECE 59 (104)
T ss_pred eEecCccCCeeeeEEE----EEecCceeEEEcccCcceEEEe
Confidence 5899999996544210 11 1134679999999876443
No 453
>COG4640 Predicted membrane protein [Function unknown]
Probab=71.16 E-value=2.1 Score=39.93 Aligned_cols=30 Identities=20% Similarity=0.555 Sum_probs=21.2
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCcccccccccccccccC
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~ 113 (334)
|+-||-||+.... ..++|++||+-+.....
T Consensus 1 M~fC~kcG~qk~E-------------d~~qC~qCG~~~t~~~s 30 (465)
T COG4640 1 MKFCPKCGSQKAE-------------DDVQCTQCGHKFTSRQS 30 (465)
T ss_pred CCccccccccccc-------------ccccccccCCcCCchhh
Confidence 4679999975332 34569999998766533
No 454
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=71.11 E-value=33 Score=31.37 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=53.4
Q ss_pred CCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh-----cCC---------CCCCCCceEEEeCc
Q 019861 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-----QES---------NFPKDSIDAVHAGA 239 (334)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-----~~~---------~~~~~~fD~V~~~~ 239 (334)
..++.+||..|+|. |..+..+++......+++++.++...+.+++.-. ... ..+.+.+|+|+...
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~ 244 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAV 244 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEcc
Confidence 34577888877652 5555666665322378888877766665553210 000 01235688887542
Q ss_pred cccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 240 AIHCWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 240 vl~h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
. ....+.+..+.|+++|+++...
T Consensus 245 g------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 245 G------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred C------CHHHHHHHHHHhhcCCEEEEEc
Confidence 2 1246888899999999988653
No 455
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=71.00 E-value=2.6 Score=26.75 Aligned_cols=27 Identities=22% Similarity=0.663 Sum_probs=18.3
Q ss_pred eeCCCCCCCccccCCCCcccccccCCccccccccc
Q 019861 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (334)
+.||-||+....... ....++|..|++
T Consensus 19 ~~CP~Cg~~~~~~~~--------~~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGSTKHYRLK--------TRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCeeeEEeC--------CCCeEECCCCCC
Confidence 679999996322211 136899999985
No 456
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=70.96 E-value=2.5 Score=40.18 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=24.5
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCccccccccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG 112 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 112 (334)
.-.||.||..+...+. +.++|+.||..+....
T Consensus 350 ~p~Cp~Cg~~m~S~G~----------~g~rC~kCg~~~~~~~ 381 (421)
T COG1571 350 NPVCPRCGGRMKSAGR----------NGFRCKKCGTRARETL 381 (421)
T ss_pred CCCCCccCCchhhcCC----------CCcccccccccCCccc
Confidence 4479999998776652 3799999998776653
No 457
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=70.84 E-value=6 Score=37.52 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=39.7
Q ss_pred CCCCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccC
Q 019861 227 FPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 227 ~~~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
.+++++|.++.......+++. ...+++|.+.++|||+++.-.....
T Consensus 291 ~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 567899999999999999754 4789999999999999999777654
No 458
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=70.65 E-value=1.7 Score=28.86 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=23.5
Q ss_pred cccCCCceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 65 ~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
.....--++|| ||......-. ....+..+.+|+.|..+.
T Consensus 16 ~e~~~ftyPCP-CGDRFeIsLe----Dl~~GE~VArCPSCSLiv 54 (67)
T COG5216 16 REEKTFTYPCP-CGDRFEISLE----DLRNGEVVARCPSCSLIV 54 (67)
T ss_pred CCCceEEecCC-CCCEeEEEHH----HhhCCceEEEcCCceEEE
Confidence 34444557798 7776544321 222345689999998643
No 459
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=70.54 E-value=34 Score=31.50 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=53.3
Q ss_pred CCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----CC-C-------CCCCCce-EEEeCc
Q 019861 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----ES-N-------FPKDSID-AVHAGA 239 (334)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----~~-~-------~~~~~fD-~V~~~~ 239 (334)
..++.+||=.|+|. |..+..+++......+++++.++...+.+++.-.. .. . .....+| +|+
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~--- 234 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLIL--- 234 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEE---
Confidence 34578898888764 44555555553222478999888887777542110 00 0 1123456 443
Q ss_pred cccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 240 AIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 240 vl~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
+....+ ..+.+..+.|++||.+++.-.
T Consensus 235 --d~~G~~-~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 235 --ETAGVP-QTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred --ECCCCH-HHHHHHHHHhhcCCEEEEEcc
Confidence 333333 467888899999999887643
No 460
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=70.53 E-value=2.6 Score=33.98 Aligned_cols=41 Identities=22% Similarity=0.448 Sum_probs=25.1
Q ss_pred eCCCCCCCccccCCCCcc-cccccCCcccccccccccccccC
Q 019861 73 ACPICYKPLTWIGDSSLS-IESAAGSSLQCNTCKKTYSGVGT 113 (334)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~-~~~~~~~~~~C~~C~~~~~~~~~ 113 (334)
.||.|+++.....++... .+.....--.|..||.-|..-+.
T Consensus 2 ~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyEr 43 (147)
T TIGR00244 2 HCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTFER 43 (147)
T ss_pred CCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccceeee
Confidence 699999966443332221 11223345789999998866543
No 461
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=69.66 E-value=2.6 Score=27.17 Aligned_cols=30 Identities=13% Similarity=0.362 Sum_probs=21.4
Q ss_pred CceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
....|-.||..+.... .....+|+.||+-.
T Consensus 5 ~~Y~C~~Cg~~~~~~~---------~~~~irCp~Cg~rI 34 (49)
T COG1996 5 MEYKCARCGREVELDQ---------ETRGIRCPYCGSRI 34 (49)
T ss_pred EEEEhhhcCCeeehhh---------ccCceeCCCCCcEE
Confidence 3578999999764222 33679999999754
No 462
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=69.41 E-value=33 Score=31.26 Aligned_cols=87 Identities=11% Similarity=-0.012 Sum_probs=56.1
Q ss_pred cCCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------C-------CCCCCceEE
Q 019861 173 LKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------N-------FPKDSIDAV 235 (334)
Q Consensus 173 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~-------~~~~~fD~V 235 (334)
....++.+||=.|. |.|..+..+++.. ..++++++.++...+.+++. ..+. . ...+.+|+|
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l-Ga~~vi~~~~~~~~~~~~~~~~~~gvdvv 211 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL-GFDVAFNYKTVKSLEETLKKASPDGYDCY 211 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-CCCEEEeccccccHHHHHHHhCCCCeEEE
Confidence 34456789988884 4567777776663 34899999888877777542 1110 0 112357777
Q ss_pred EeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
+-. ... ..+....+.|+++|+++...
T Consensus 212 ~d~-----~G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 212 FDN-----VGG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEC-----CCH--HHHHHHHHHhCcCcEEEEec
Confidence 643 222 24678899999999998653
No 463
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=69.32 E-value=2.8 Score=32.37 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=21.8
Q ss_pred cccCCCceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 65 ~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
...-.....|+.||....... ..+.||.||...
T Consensus 64 I~~vp~~~~C~~Cg~~~~~~~-----------~~~~CP~Cgs~~ 96 (113)
T PRK12380 64 IVYKPAQAWCWDCSQVVEIHQ-----------HDAQCPHCHGER 96 (113)
T ss_pred EEeeCcEEEcccCCCEEecCC-----------cCccCcCCCCCC
Confidence 334445788999997543322 356799999654
No 464
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=69.28 E-value=12 Score=30.45 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=23.9
Q ss_pred CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCC
Q 019861 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210 (334)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s 210 (334)
.+-|||+|-|+|..-..|.+..+...++.+|-.
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 468999999999999999999999999999953
No 465
>PRK11018 hypothetical protein; Provisional
Probab=68.95 E-value=39 Score=24.01 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCcEE
Q 019861 245 SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFV 324 (334)
Q Consensus 245 ~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~~~ 324 (334)
|-|.--.++..+-|++|..+.+..-+. -+.+++..++++.|++++.....+..+
T Consensus 19 P~Pvl~~kk~l~~l~~G~~L~V~~d~~--------------------------~a~~di~~~~~~~G~~v~~~~~~~g~~ 72 (78)
T PRK11018 19 PYPAVATLEALPQLKKGEILEVVSDCP--------------------------QSINNIPLDARNHGYTVLDIQQDGPTI 72 (78)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEEeCCc--------------------------cHHHHHHHHHHHcCCEEEEEEecCCeE
Confidence 456556677778888998876644332 246789999999999998755444444
Q ss_pred EEEEE
Q 019861 325 MFTAT 329 (334)
Q Consensus 325 ~~~a~ 329 (334)
.+..+
T Consensus 73 ~~~I~ 77 (78)
T PRK11018 73 RYLIQ 77 (78)
T ss_pred EEEEE
Confidence 44433
No 466
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=68.92 E-value=38 Score=31.03 Aligned_cols=83 Identities=7% Similarity=0.028 Sum_probs=53.8
Q ss_pred CCcEEEECC--CcCHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHHHHhcCC-------C-------CCCCCceEEEeCcc
Q 019861 178 GGNIIDASC--GSGLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQES-------N-------FPKDSIDAVHAGAA 240 (334)
Q Consensus 178 ~~~vLDiGc--G~G~~~~~l~~~~~~~-~v~giD~s~~~~~~a~~~~~~~~-------~-------~~~~~fD~V~~~~v 240 (334)
+.+||=.|+ |.|..+..+++.. .. ++++++.+++..+.+++.+.... . ...+.+|+|+-.-
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~- 232 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNV- 232 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECC-
Confidence 378888886 4566777677664 34 79999988887777665332110 0 1124588887432
Q ss_pred ccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 241 IHCWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 241 l~h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
... .+.+..+.|+++|+++...
T Consensus 233 ----g~~--~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 ----GGE--ISDTVISQMNENSHIILCG 254 (345)
T ss_pred ----CcH--HHHHHHHHhccCCEEEEEe
Confidence 232 3578889999999988643
No 467
>PTZ00357 methyltransferase; Provisional
Probab=68.72 E-value=51 Score=33.79 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=27.5
Q ss_pred CcEEEECCCcCHHHHHHHH----cCCCCeEEEEeCCHHHHHHH
Q 019861 179 GNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQC 217 (334)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a 217 (334)
..|+-+|+|-|-+.....+ .+-..++++||-++......
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~t 744 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFT 744 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHH
Confidence 3589999999987554433 35456899999996644333
No 468
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=68.72 E-value=54 Score=27.59 Aligned_cols=86 Identities=21% Similarity=0.253 Sum_probs=47.8
Q ss_pred cEEEECCCc-C-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCCC--------------------------CCC
Q 019861 180 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP--------------------------KDS 231 (334)
Q Consensus 180 ~vLDiGcG~-G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~--------------------------~~~ 231 (334)
+|--||.|. | .++..+++.|. +|+|+|+++..++..++- ..++. -..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g---~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNG---ELPIYEPGLDELLKENVSAGRLRATTDIEEAIKD 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTT---SSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhc---cccccccchhhhhccccccccchhhhhhhhhhhc
Confidence 566678886 3 34666777787 999999999887776531 11111 023
Q ss_pred ceEEEeCcc--c--cCCCC---HHHHHHHHHHcccCCcEEEEEEec
Q 019861 232 IDAVHAGAA--I--HCWSS---PSTGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 232 fD~V~~~~v--l--~h~~d---~~~~L~~i~r~LkpgG~lii~~~~ 270 (334)
.|+++..-- . ...+| ...+++.+...|++|-.+++..-.
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 566665321 1 11112 257888999999997776664443
No 469
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=68.69 E-value=2.5 Score=34.31 Aligned_cols=39 Identities=18% Similarity=0.502 Sum_probs=23.6
Q ss_pred cCCCceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
.....+.||.|+........ ..... ..+.+.|+.||..-
T Consensus 95 ~~~~~Y~Cp~C~~~y~~~ea--~~~~d-~~~~f~Cp~Cg~~l 133 (147)
T smart00531 95 TNNAYYKCPNCQSKYTFLEA--NQLLD-MDGTFTCPRCGEEL 133 (147)
T ss_pred cCCcEEECcCCCCEeeHHHH--HHhcC-CCCcEECCCCCCEE
Confidence 34467999999986543221 11111 23459999999754
No 470
>PHA02768 hypothetical protein; Provisional
Probab=68.68 E-value=1.2 Score=29.56 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=24.5
Q ss_pred eeCCCCCCCccccCCCCcccccccCCcccccccccccccccCc
Q 019861 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH 114 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~ 114 (334)
+.||.||........-...... -.....|..|+..+.....+
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~-H~k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRK-HNTNLKLSNCKRISLRTGEY 47 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHh-cCCcccCCcccceeccccee
Confidence 6899999976443210001111 11367999999988755443
No 471
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=68.68 E-value=57 Score=30.47 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=54.7
Q ss_pred CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------CC-------CCCCCceEEEe
Q 019861 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SN-------FPKDSIDAVHA 237 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------~~-------~~~~~fD~V~~ 237 (334)
...++.+||=+|+|. |.++..+++.....+++++|.++..++.+++.-... .. ...+.+|+|+-
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 261 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFE 261 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEE
Confidence 445678999999864 555555666542237999999998888876531100 00 01124676654
Q ss_pred CccccCCCCHHHHHHHHHHcccCC-cEEEEEEe
Q 019861 238 GAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 269 (334)
Q Consensus 238 ~~vl~h~~d~~~~L~~i~r~Lkpg-G~lii~~~ 269 (334)
. ...+ ..+.+..+.|+++ |++++...
T Consensus 262 ~-----~G~~-~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 262 C-----IGNV-NVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred C-----CCCH-HHHHHHHHHhhcCCCeEEEEec
Confidence 3 3333 3577778899886 98776543
No 472
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=68.61 E-value=38 Score=30.94 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=55.8
Q ss_pred CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----CC---------CCCCCCceEEEeC
Q 019861 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----ES---------NFPKDSIDAVHAG 238 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----~~---------~~~~~~fD~V~~~ 238 (334)
...++.+||-.|+|. |..+..+++.. ..+++++..+++..+.+++.-.. .. ..++..+|+|+..
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~ 234 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDA 234 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEEC
Confidence 344577999998764 55666666653 34888888788777766442110 00 0123458888765
Q ss_pred ccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
.. . ...+.++.+.|+++|.++...
T Consensus 235 ~g-----~-~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 235 TG-----N-PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CC-----C-HHHHHHHHHHHhcCCEEEEEc
Confidence 31 1 235788899999999988654
No 473
>PTZ00083 40S ribosomal protein S27; Provisional
Probab=68.47 E-value=3.1 Score=30.02 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=30.7
Q ss_pred ccccCCCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccC
Q 019861 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (334)
Q Consensus 64 ~~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~ 113 (334)
...+......||-|+......+. ....+.|..|+.....+.|
T Consensus 28 ~PnS~Fm~VkCp~C~n~q~VFSh--------A~t~V~C~~Cg~~L~~PTG 69 (85)
T PTZ00083 28 GPNSYFMDVKCPGCSQITTVFSH--------AQTVVLCGGCSSQLCQPTG 69 (85)
T ss_pred CCCCeEEEEECCCCCCeeEEEec--------CceEEEccccCCEeeccCC
Confidence 44556667889999997665543 3467999999998866644
No 474
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=68.46 E-value=56 Score=29.67 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=55.4
Q ss_pred CCCCCCcEEEECCC-cCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------CC---CCCCceEEEeCcccc
Q 019861 174 KPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------NF---PKDSIDAVHAGAAIH 242 (334)
Q Consensus 174 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~~---~~~~fD~V~~~~vl~ 242 (334)
...++.+||-+|+| .|..+..+++.. ..++++++.++...+.+++. .... .. ..+.+|+|+...
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~d~vi~~~--- 233 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKL-GADEVVDSGAELDEQAAAGGADVILVTV--- 233 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh-CCcEEeccCCcchHHhccCCCCEEEECC---
Confidence 44557788888886 465555555553 24899999999888777542 1110 00 123578777542
Q ss_pred CCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861 243 CWSSPSTGVAEISRVLRPGGVFVGTT 268 (334)
Q Consensus 243 h~~d~~~~L~~i~r~LkpgG~lii~~ 268 (334)
.. ...+.++.+.|+++|.++...
T Consensus 234 --~~-~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 234 --VS-GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred --Cc-HHHHHHHHHhcccCCEEEEEC
Confidence 12 235788899999999888764
No 475
>PLN00209 ribosomal protein S27; Provisional
Probab=68.42 E-value=3.1 Score=30.12 Aligned_cols=42 Identities=12% Similarity=0.300 Sum_probs=30.6
Q ss_pred ccccCCCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccC
Q 019861 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (334)
Q Consensus 64 ~~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~ 113 (334)
...+......||-|+......+. ....+.|..|+.....+.|
T Consensus 29 ~PnS~Fm~VkCp~C~n~q~VFSh--------A~t~V~C~~Cg~~L~~PTG 70 (86)
T PLN00209 29 SPNSFFMDVKCQGCFNITTVFSH--------SQTVVVCGSCQTVLCQPTG 70 (86)
T ss_pred CCCCEEEEEECCCCCCeeEEEec--------CceEEEccccCCEeeccCC
Confidence 34555667889999997665553 3467999999998866644
No 476
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=68.39 E-value=2.8 Score=28.61 Aligned_cols=31 Identities=26% Similarity=0.548 Sum_probs=20.0
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCcccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (334)
..+||.||.+......+ .....+.|.+|+..
T Consensus 6 lKPCPFCG~~~~~v~~~------~g~~~v~C~~CgA~ 36 (64)
T PRK09710 6 VKPCPFCGCPSVTVKAI------SGYYRAKCNGCESR 36 (64)
T ss_pred ccCCCCCCCceeEEEec------CceEEEEcCCCCcC
Confidence 46799999965433211 12235899999974
No 477
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=68.27 E-value=2.8 Score=38.24 Aligned_cols=42 Identities=12% Similarity=0.338 Sum_probs=25.4
Q ss_pred cCCCceeCCCCCCCccccCCC-CcccccccCCccccccccccc
Q 019861 67 TSKNVLACPICYKPLTWIGDS-SLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 67 ~~~~~l~CPiC~~~l~~~~~~-~~~~~~~~~~~~~C~~C~~~~ 108 (334)
+....+.||-|++........ .-+.+.....++.|..||+.|
T Consensus 254 ~~t~~~~C~~C~~~~~~~~q~QtrsaDEpmT~f~~C~~Cg~~w 296 (299)
T TIGR01385 254 AVTDLFTCGKCKQKKCTYYQLQTRSADEPMTTFVTCEECGNRW 296 (299)
T ss_pred CCcccccCCCCCCccceEEEecccCCCCCCeEEEEcCCCCCee
Confidence 345579999999865332111 111112244678999999866
No 478
>PF01667 Ribosomal_S27e: Ribosomal protein S27; InterPro: IPR000592 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families include mammalian, yeast, Chlamydomonas reinhardtii and Entamoeba histolytica S27, and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0250 []. These proteins have from 62 to 87 amino acids. They contain, in their central section, a putative zinc-finger region of the type C-x(2)-C-x(14)-C-x(2)-C.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1QXF_A 3IZ6_X 2XZN_6 2XZM_6 3U5G_b 3IZB_X 3U5C_b.
Probab=68.14 E-value=2.5 Score=27.99 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=22.6
Q ss_pred CCCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccC
Q 019861 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (334)
Q Consensus 68 ~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~ 113 (334)
......||-|+......++ ....+.|..|+.+...+.|
T Consensus 4 ~Fm~VkCp~C~~~q~vFSh--------a~t~V~C~~Cg~~L~~PtG 41 (55)
T PF01667_consen 4 YFMDVKCPGCYNIQTVFSH--------AQTVVKCVVCGTVLAQPTG 41 (55)
T ss_dssp -EEEEE-TTT-SEEEEETT---------SS-EE-SSSTSEEEEE-S
T ss_pred cEEEEECCCCCCeeEEEec--------CCeEEEcccCCCEecCCCC
Confidence 3456789999997665553 3467999999988766543
No 479
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=67.96 E-value=2.6 Score=29.58 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=23.5
Q ss_pred eCCCCCCCccccCCCCcccccccCCcccccccccccccccC
Q 019861 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (334)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~ 113 (334)
.||.|+..-.... .......+..|-.||+....++.
T Consensus 10 ~CP~C~~~D~i~~-----~~e~~ve~vECV~CGy~e~~~~~ 45 (71)
T PF09526_consen 10 VCPKCQAMDTIMM-----WRENGVEYVECVECGYTERQPDQ 45 (71)
T ss_pred cCCCCcCccEEEE-----EEeCCceEEEecCCCCeeccCCc
Confidence 5999999432111 01113478999999998877655
No 480
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=67.49 E-value=3.1 Score=27.90 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=22.5
Q ss_pred eCCCCCCCccccCCCCcccccccCCcccccccccccccccC
Q 019861 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (334)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~ 113 (334)
.||-|+..-.... .......+..|-.||+.....+.
T Consensus 11 ~CP~C~~~Dtl~~-----~~e~~~e~vECv~Cg~~~~~~~~ 46 (59)
T TIGR02443 11 VCPACSAQDTLAM-----WKENNIELVECVECGYQEQQKDQ 46 (59)
T ss_pred cCCCCcCccEEEE-----EEeCCceEEEeccCCCccccCCc
Confidence 5999999432211 01123468999999987765544
No 481
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=67.34 E-value=3.4 Score=25.68 Aligned_cols=30 Identities=17% Similarity=0.476 Sum_probs=19.2
Q ss_pred ceeCCCCCCCccccCCCCcccccccCCccccccccc
Q 019861 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (334)
Q Consensus 71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (334)
-+.|+-||........ .. ......|+.||.
T Consensus 5 ey~C~~Cg~~fe~~~~----~~--~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 5 EYRCEECGHEFEVLQS----IS--EDDPVPCPECGS 34 (42)
T ss_pred EEEeCCCCCEEEEEEE----cC--CCCCCcCCCCCC
Confidence 4789999985543321 11 135789999987
No 482
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=67.27 E-value=31 Score=31.20 Aligned_cols=39 Identities=33% Similarity=0.459 Sum_probs=29.6
Q ss_pred CcEEEECCCc-C-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHH
Q 019861 179 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (334)
Q Consensus 179 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~ 219 (334)
.+|.=||+|. | .++..++..|. +|+.+|.++..++.+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~ 44 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY--DVTIVDVSEEILKNAME 44 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHH
Confidence 4688899985 3 45666667776 89999999998876654
No 483
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=67.10 E-value=30 Score=31.07 Aligned_cols=80 Identities=15% Similarity=0.094 Sum_probs=48.7
Q ss_pred cEEEECCCc--CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-C--CC-CCCCceEEEeCccccCCCCHHHHHHH
Q 019861 180 NIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-S--NF-PKDSIDAVHAGAAIHCWSSPSTGVAE 253 (334)
Q Consensus 180 ~vLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~--~~-~~~~fD~V~~~~vl~h~~d~~~~L~~ 253 (334)
+|.=||+|. |.++..+.+.+. +|+++|.++..++.+.+.-... . .. .-...|+|+..--... -..++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~---~~~~~~~ 76 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL---LLPPSEQ 76 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH---HHHHHHH
Confidence 466678875 456677777765 8999999998887776531100 0 00 1235677776642211 1356777
Q ss_pred HHHcccCCcEE
Q 019861 254 ISRVLRPGGVF 264 (334)
Q Consensus 254 i~r~LkpgG~l 264 (334)
+...++++..+
T Consensus 77 l~~~l~~~~ii 87 (279)
T PRK07417 77 LIPALPPEAIV 87 (279)
T ss_pred HHHhCCCCcEE
Confidence 87778776433
No 484
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=66.86 E-value=23 Score=29.25 Aligned_cols=104 Identities=19% Similarity=0.128 Sum_probs=57.5
Q ss_pred HHHHHHHHcccCC--CCCCcEEEECCCcCHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHh---cCCC--CC---CCC
Q 019861 163 EKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQ---QESN--FP---KDS 231 (334)
Q Consensus 163 ~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~---~~~~--~~---~~~ 231 (334)
++..+.+.+.+.. ....+|+-|||=+-. ..+.+ ..+..+++-+|++...-....+.+. ...| ++ .++
T Consensus 9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~--~~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~~~~~l~~~ 86 (162)
T PF10237_consen 9 DETAEFLARELLDGALDDTRIACLSTPSLY--EALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEELPEELKGK 86 (162)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCcHHH--HHHHhhcCCCccEEEEeecchHHhcCCcceEECCCCChhhhhhhcCCC
Confidence 3334444444322 235799999997643 33333 3345589999998876654432111 1111 11 578
Q ss_pred ceEEEeCccccCCCC-HH-HHHHHHHHcccCCcEEEEEEec
Q 019861 232 IDAVHAGAAIHCWSS-PS-TGVAEISRVLRPGGVFVGTTYI 270 (334)
Q Consensus 232 fD~V~~~~vl~h~~d-~~-~~L~~i~r~LkpgG~lii~~~~ 270 (334)
||+|++.==+ +.+ -. .....++-++++++.+++.++.
T Consensus 87 ~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~Tg~ 125 (162)
T PF10237_consen 87 FDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCTGE 125 (162)
T ss_pred ceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEecHH
Confidence 9999985322 211 11 2334455556888888886654
No 485
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=66.33 E-value=3.2 Score=34.83 Aligned_cols=26 Identities=35% Similarity=0.744 Sum_probs=21.3
Q ss_pred eCCCCCCCccccCCCCcccccccCCcccccccccccc
Q 019861 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (334)
Q Consensus 73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (334)
.|+-|+..|.... ..+.|++||..-.
T Consensus 151 ~CsrC~~~L~~~~-----------~~l~Cp~Cg~tEk 176 (188)
T COG1096 151 RCSRCRAPLVKKG-----------NMLKCPNCGNTEK 176 (188)
T ss_pred EccCCCcceEEcC-----------cEEECCCCCCEEe
Confidence 4999999998754 6899999997653
No 486
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=66.32 E-value=75 Score=28.84 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=55.4
Q ss_pred CCCCCCcEEEECCCc-CHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHHHHhc-----CC-C------CCCCCceEEEeCc
Q 019861 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQ-----ES-N------FPKDSIDAVHAGA 239 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~-----~~-~------~~~~~fD~V~~~~ 239 (334)
...++.+||-+|+|. |..+..+++... .. +++++.++...+.+++.-.. .. . ...+.+|+|+...
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~ 234 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEAT 234 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECC
Confidence 445678999998652 455555555532 34 88888888877776542110 00 0 1234688888542
Q ss_pred cccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 240 AIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 240 vl~h~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
. ....+.++.+.|+++|+++....
T Consensus 235 ~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 235 G------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred C------ChHHHHHHHHHHhcCCEEEEEec
Confidence 1 12467888999999999876543
No 487
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=66.30 E-value=58 Score=30.92 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=55.3
Q ss_pred CCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------CCC--------CCCCCceEEEeCc
Q 019861 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ESN--------FPKDSIDAVHAGA 239 (334)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------~~~--------~~~~~fD~V~~~~ 239 (334)
..++.+||=.|+|. |.++..+++......++.+|.++.-++.+++.-.. ... .....+|+|+-.-
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~ 262 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCV 262 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECC
Confidence 44577777788764 45555555543223466778888777777653110 000 1123578887543
Q ss_pred cccC--------CCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861 240 AIHC--------WSSPSTGVAEISRVLRPGGVFVGTTY 269 (334)
Q Consensus 240 vl~h--------~~d~~~~L~~i~r~LkpgG~lii~~~ 269 (334)
.-.. -.++...+++..+.+++||++++.-.
T Consensus 263 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 263 GFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 2110 01223578999999999999887554
No 488
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=66.28 E-value=32 Score=31.42 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=50.4
Q ss_pred CcEEEECCCc-C-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---CCC--CCCCceEEEeCccccCCCCHHHHH
Q 019861 179 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---SNF--PKDSIDAVHAGAAIHCWSSPSTGV 251 (334)
Q Consensus 179 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~--~~~~fD~V~~~~vl~h~~d~~~~L 251 (334)
.+|.=||+|. | .++..+...+....++++|.++...+.+++.-... ... .-...|+|+..--... ...++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~---~~~v~ 83 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA---SGAVA 83 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH---HHHHH
Confidence 5788899886 3 45555666663348999999998777665421000 000 0135688876643221 23556
Q ss_pred HHHHHcccCCcEEE
Q 019861 252 AEISRVLRPGGVFV 265 (334)
Q Consensus 252 ~~i~r~LkpgG~li 265 (334)
+++...+++|..++
T Consensus 84 ~~l~~~l~~~~iv~ 97 (307)
T PRK07502 84 AEIAPHLKPGAIVT 97 (307)
T ss_pred HHHHhhCCCCCEEE
Confidence 77777788877554
No 489
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=66.23 E-value=68 Score=28.95 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=53.7
Q ss_pred CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CCCCCCCceEEEeCccccCCCC
Q 019861 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SNFPKDSIDAVHAGAAIHCWSS 246 (334)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~~~~~~fD~V~~~~vl~h~~d 246 (334)
...++.+||=.|+|. |..+..+++.. ..++++++.++...+.+++ +... .....+.+|+|+-.. ..
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~vid~~-----g~ 224 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR-LGVETVLPDEAESEGGGFDVVVEAT-----GS 224 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-cCCcEEeCccccccCCCCCEEEECC-----CC
Confidence 445578888887542 33333334332 2378999999888888876 2211 112335688887642 11
Q ss_pred HHHHHHHHHHcccCCcEEEEE
Q 019861 247 PSTGVAEISRVLRPGGVFVGT 267 (334)
Q Consensus 247 ~~~~L~~i~r~LkpgG~lii~ 267 (334)
...+....+.|+++|.++..
T Consensus 225 -~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 225 -PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred -hHHHHHHHHHhhcCCEEEEE
Confidence 33577888899999999873
No 490
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.21 E-value=51 Score=30.50 Aligned_cols=89 Identities=15% Similarity=0.063 Sum_probs=57.0
Q ss_pred CCCCCcEEEECCC-cCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC---------------CCCCCceEEEeC
Q 019861 175 PVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN---------------FPKDSIDAVHAG 238 (334)
Q Consensus 175 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~---------------~~~~~fD~V~~~ 238 (334)
..+|.+|-=+|.| -|.++..++++- ..+|+++|-+..--+.+-+.+..+.- .-+.-.|.|...
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~ 257 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL 257 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec
Confidence 3467777666655 588888888873 23999999987666666665544320 112333444422
Q ss_pred ccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861 239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 272 (334)
Q Consensus 239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~ 272 (334)
-+| .+..+.+.||++|.+++.-....
T Consensus 258 --a~~------~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 258 --AEH------ALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred --ccc------chHHHHHHhhcCCEEEEEeCcCC
Confidence 222 36678889999999888665543
No 491
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=65.86 E-value=2.2 Score=31.63 Aligned_cols=36 Identities=19% Similarity=0.517 Sum_probs=0.0
Q ss_pred eCCCCCC-CccccCCCCcccccccCCccccccccccc
Q 019861 73 ACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 73 ~CPiC~~-~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
.||.||+ ......-+--+-+......++|-+|++.+
T Consensus 67 ~Cp~Cgh~rayF~qlQtRSADEPmT~FYkC~~C~~~W 103 (105)
T KOG2906|consen 67 TCPTCGHERAYFMQLQTRSADEPMTTFYKCCKCKHRW 103 (105)
T ss_pred cCCCCCCCceEEEEeeeccCCCcHhHhhhhhcccccc
No 492
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=65.84 E-value=9.9 Score=31.89 Aligned_cols=84 Identities=18% Similarity=0.289 Sum_probs=50.3
Q ss_pred EEEECCCc-C-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-------CCC------------------CCC-CCc
Q 019861 181 IIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-------ESN------------------FPK-DSI 232 (334)
Q Consensus 181 vLDiGcG~-G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~------------------~~~-~~f 232 (334)
|.=||+|+ | .++..++..|. +|+.+|.+++.++.+++++.. ... +.+ ...
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~a 79 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDA 79 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTE
T ss_pred EEEEcCCHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhh
Confidence 55688876 3 34555566666 999999999999888765443 111 110 134
Q ss_pred eEEEeCccccCCCC----HHHHHHHHHHcccCCcEEEEEEecc
Q 019861 233 DAVHAGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 233 D~V~~~~vl~h~~d----~~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
|+|+ |.+++ -..+++++.+.+.|+-.|.-.+...
T Consensus 80 dlVi-----Eai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 80 DLVI-----EAIPEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp SEEE-----E-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred heeh-----hhccccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 5444 44442 2578999999999998877765543
No 493
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=65.58 E-value=3.7 Score=32.85 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=21.1
Q ss_pred CceeCCCCCCCccccC-CC--------Ccc-cccccCCccccccccccc
Q 019861 70 NVLACPICYKPLTWIG-DS--------SLS-IESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~-~~--------~~~-~~~~~~~~~~C~~C~~~~ 108 (334)
....|+.||....... .. .+. .+......++||.||...
T Consensus 69 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~~ 117 (135)
T PRK03824 69 AVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSRD 117 (135)
T ss_pred eEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCCCC
Confidence 5688999997533321 00 000 000013568899999754
No 494
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=65.22 E-value=57 Score=31.26 Aligned_cols=86 Identities=10% Similarity=0.039 Sum_probs=50.1
Q ss_pred CCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCCC--CCCceEEEeCccccCCCCHHHHHH
Q 019861 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP--KDSIDAVHAGAAIHCWSSPSTGVA 252 (334)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~--~~~fD~V~~~~vl~h~~d~~~~L~ 252 (334)
..+.+|+=+|+|. |......++. ...+|+++|.++.....+...-....+.. -...|+|+..- ..+ .++.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~-~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaT-----G~~-~vI~ 265 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARG-MGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITAT-----GNK-DVIR 265 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhh-CcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECC-----CCH-HHHH
Confidence 4588999999997 5444444433 24589999988865443332100000000 12468877642 233 3444
Q ss_pred -HHHHcccCCcEEEEEE
Q 019861 253 -EISRVLRPGGVFVGTT 268 (334)
Q Consensus 253 -~i~r~LkpgG~lii~~ 268 (334)
+....+|+|++++...
T Consensus 266 ~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 266 GEHFENMKDGAIVANIG 282 (406)
T ss_pred HHHHhcCCCCcEEEEEC
Confidence 5888999999887643
No 495
>PF08421 Methyltransf_13: Putative zinc binding domain; InterPro: IPR013630 This domain is found at the N terminus of bacterial methyltransferases. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=65.04 E-value=2.2 Score=29.06 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=11.9
Q ss_pred cCCccccccccccccccc
Q 019861 95 AGSSLQCNTCKKTYSGVG 112 (334)
Q Consensus 95 ~~~~~~C~~C~~~~~~~~ 112 (334)
......|.+|+.+.....
T Consensus 37 pL~l~~C~~CglvQl~~~ 54 (62)
T PF08421_consen 37 PLDLYVCEDCGLVQLEEV 54 (62)
T ss_dssp EEEEEEETTT--EEESS-
T ss_pred CCEEEECCCCCchhcCCc
Confidence 567899999998876553
No 496
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=64.82 E-value=6.5 Score=36.44 Aligned_cols=97 Identities=19% Similarity=0.109 Sum_probs=66.9
Q ss_pred cCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHH-------HHHhcCC----------------CC-C
Q 019861 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY-------EFVQQES----------------NF-P 228 (334)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~-------~~~~~~~----------------~~-~ 228 (334)
....+|..|+|-=-|||.++...+..|. .|+|.|++-.++...+ .++++-+ +. .
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 3445689999999999999999998876 9999999998887332 2232211 11 1
Q ss_pred CCCceEEEeCc---c---------------------ccCCCCH---------HHHHHHHHHcccCCcEEEEEEecc
Q 019861 229 KDSIDAVHAGA---A---------------------IHCWSSP---------STGVAEISRVLRPGGVFVGTTYIV 271 (334)
Q Consensus 229 ~~~fD~V~~~~---v---------------------l~h~~d~---------~~~L~~i~r~LkpgG~lii~~~~~ 271 (334)
...||+|+|.= | -.|.+.. ...|.-.++.|..||++++-.|..
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 45799999741 0 1233211 245677789999999999977754
No 497
>PRK01343 zinc-binding protein; Provisional
Probab=64.54 E-value=3.8 Score=27.34 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=19.3
Q ss_pred CCceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (334)
Q Consensus 69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (334)
.....||+|+.+..... .-+....|..++..
T Consensus 7 ~p~~~CP~C~k~~~~~~-----------rPFCS~RC~~iDLg 37 (57)
T PRK01343 7 RPTRPCPECGKPSTREA-----------YPFCSERCRDIDLN 37 (57)
T ss_pred CCCCcCCCCCCcCcCCC-----------CcccCHHHhhhhHH
Confidence 35578999999754321 23555667766544
No 498
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=64.49 E-value=2.9 Score=35.17 Aligned_cols=36 Identities=17% Similarity=0.439 Sum_probs=24.3
Q ss_pred cccCCCceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 65 ~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
.......+.||.|+........ ....+.|+.||..-
T Consensus 111 ~e~~~~~Y~Cp~C~~rytf~eA--------~~~~F~Cp~Cg~~L 146 (178)
T PRK06266 111 EEENNMFFFCPNCHIRFTFDEA--------MEYGFRCPQCGEML 146 (178)
T ss_pred hccCCCEEECCCCCcEEeHHHH--------hhcCCcCCCCCCCC
Confidence 3445578999999986544321 22469999999644
No 499
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=64.49 E-value=4.1 Score=26.17 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=18.8
Q ss_pred eeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (334)
Q Consensus 72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (334)
--||.||....... ...-+.|..||...
T Consensus 20 ~~CPrCG~gvfmA~---------H~dR~~CGkCgyTe 47 (51)
T COG1998 20 RFCPRCGPGVFMAD---------HKDRWACGKCGYTE 47 (51)
T ss_pred ccCCCCCCcchhhh---------cCceeEeccccceE
Confidence 45999997443322 12579999998653
No 500
>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....
Probab=64.43 E-value=6.7 Score=26.07 Aligned_cols=26 Identities=35% Similarity=0.869 Sum_probs=17.6
Q ss_pred CceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (334)
Q Consensus 70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (334)
+.-.||.||..-. ....|+.|| +|..
T Consensus 25 ~l~~c~~cg~~~~--------------~H~vc~~cG-~y~~ 50 (56)
T PF01783_consen 25 NLVKCPNCGEPKL--------------PHRVCPSCG-YYKG 50 (56)
T ss_dssp SEEESSSSSSEES--------------TTSBCTTTB-BSSS
T ss_pred ceeeeccCCCEec--------------ccEeeCCCC-eECC
Confidence 4567999997321 357899997 4433
Done!