Query 019862
Match_columns 334
No_of_seqs 162 out of 1421
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:08:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0065 LeuC 3-isopropylmalate 100.0 1E-88 2.3E-93 662.8 25.4 255 67-334 1-257 (423)
2 TIGR02083 LEU2 3-isopropylmala 100.0 1.3E-86 2.7E-91 660.3 28.2 254 69-334 1-254 (419)
3 TIGR01343 hacA_fam homoaconita 100.0 1.6E-84 3.5E-89 645.0 27.6 251 70-334 1-251 (412)
4 PRK00402 3-isopropylmalate deh 100.0 3.3E-84 7.2E-89 643.7 28.2 254 67-334 1-254 (418)
5 TIGR02086 IPMI_arch 3-isopropy 100.0 9.3E-84 2E-88 639.5 27.1 250 69-334 1-250 (412)
6 TIGR00170 leuC 3-isopropylmala 100.0 1.6E-83 3.5E-88 646.7 27.3 254 67-334 1-272 (465)
7 PRK12466 isopropylmalate isome 100.0 3.4E-83 7.4E-88 645.1 27.9 254 67-334 2-274 (471)
8 PRK05478 isopropylmalate isome 100.0 2.7E-82 5.8E-87 638.3 26.9 254 67-334 1-272 (466)
9 PF00330 Aconitase: Aconitase 100.0 5E-80 1.1E-84 622.5 16.6 251 70-334 1-273 (465)
10 TIGR00139 h_aconitase homoacon 100.0 3.4E-78 7.4E-83 630.1 27.2 237 68-320 1-244 (712)
11 cd01583 IPMI 3-isopropylmalate 100.0 3.8E-77 8.3E-82 588.2 24.4 225 97-334 1-225 (382)
12 TIGR01342 acon_putative aconit 100.0 9.9E-77 2.1E-81 618.0 27.5 249 70-334 1-250 (658)
13 PRK07229 aconitate hydratase; 100.0 1.4E-76 3.1E-81 616.9 27.1 252 67-334 1-253 (646)
14 TIGR01340 aconitase_mito aconi 100.0 1.4E-75 3.1E-80 614.5 27.8 251 67-334 18-299 (745)
15 cd01581 AcnB Aconitate hydrata 100.0 2.6E-75 5.7E-80 581.8 26.0 227 71-319 1-240 (436)
16 cd01585 AcnA_Bact Aconitase ca 100.0 1.6E-74 3.4E-79 568.7 23.9 223 96-334 1-224 (380)
17 PRK11413 putative hydratase; P 100.0 4.6E-73 9.9E-78 594.3 24.8 250 64-334 30-283 (751)
18 cd01584 AcnA_Mitochondrial Aco 100.0 1.5E-71 3.2E-76 552.3 21.9 221 97-334 1-240 (412)
19 PRK09238 bifunctional aconitat 100.0 1.3E-69 2.8E-74 569.8 27.5 247 51-319 353-612 (835)
20 cd01582 Homoaconitase Homoacon 100.0 6.1E-70 1.3E-74 532.8 19.2 203 98-315 2-204 (363)
21 TIGR00117 acnB aconitate hydra 100.0 1.2E-68 2.6E-73 561.5 26.7 247 51-319 354-613 (844)
22 PLN00094 aconitate hydratase 2 100.0 6.6E-66 1.4E-70 540.8 25.6 247 50-318 425-685 (938)
23 cd01351 Aconitase Aconitase ca 100.0 1.6E-65 3.5E-70 507.7 21.7 223 97-334 1-232 (389)
24 PRK09277 aconitate hydratase; 100.0 1.2E-64 2.6E-69 535.6 24.5 237 85-323 74-334 (888)
25 PTZ00092 aconitate hydratase-l 100.0 1.5E-64 3.3E-69 535.2 23.1 237 84-322 79-336 (898)
26 PLN00070 aconitate hydratase 100.0 1.3E-64 2.7E-69 536.7 22.0 236 86-323 113-369 (936)
27 PRK12881 acnA aconitate hydrat 100.0 2E-64 4.3E-69 534.6 23.3 236 86-323 74-334 (889)
28 TIGR01341 aconitase_1 aconitat 100.0 6.2E-64 1.3E-68 529.6 21.6 237 85-323 56-317 (876)
29 TIGR02333 2met_isocit_dHY 2-me 100.0 9.9E-64 2.2E-68 526.5 21.2 250 67-323 49-321 (858)
30 cd01586 AcnA_IRP Aconitase A c 100.0 2.8E-63 6.1E-68 489.9 15.0 217 97-315 1-242 (404)
31 COG1048 AcnA Aconitase A [Ener 100.0 2.4E-58 5.1E-63 481.8 15.1 253 67-322 31-321 (861)
32 KOG0453 Aconitase/homoaconitas 100.0 4E-55 8.6E-60 442.4 19.2 257 61-334 50-330 (778)
33 KOG0452 RNA-binding translatio 100.0 6.1E-47 1.3E-51 381.1 9.8 248 70-323 61-330 (892)
34 KOG0454 3-isopropylmalate dehy 100.0 1.7E-41 3.8E-46 333.1 5.1 329 1-332 1-329 (502)
35 COG1049 AcnB Aconitase B [Ener 99.9 6.5E-27 1.4E-31 237.8 11.1 247 50-318 354-613 (852)
36 PRK13703 conjugal pilus assemb 26.5 45 0.00098 32.0 2.2 29 145-184 133-161 (248)
37 COG2607 Predicted ATPase (AAA+ 26.0 1.9E+02 0.004 28.5 6.2 70 62-149 91-162 (287)
38 PF15647 Tox-REase-3: Restrict 25.0 61 0.0013 27.3 2.4 82 108-201 13-108 (109)
39 PF01171 ATP_bind_3: PP-loop f 23.6 1E+02 0.0022 27.2 3.7 35 125-162 28-62 (182)
40 COG3961 Pyruvate decarboxylase 21.8 40 0.00086 35.9 0.8 79 188-292 373-451 (557)
No 1
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-88 Score=662.81 Aligned_cols=255 Identities=43% Similarity=0.689 Sum_probs=246.7
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHH
Q 019862 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRN 146 (334)
Q Consensus 67 ~~mTl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~~~a~~ 146 (334)
++|||+||||++|++.+.+.+||.+.+++|++|+||+|+|++|+.|+ ++|. +||+|+|+++++||++|+++.+.+++
T Consensus 1 ~~~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~lr-~~g~--kV~~p~k~~~~~DH~vPt~~~~~a~~ 77 (423)
T COG0065 1 SAKTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGLR-EAGR--KVRDPEKTVATFDHNVPTPDIKAAEQ 77 (423)
T ss_pred CCccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHHH-HhCC--cccCccceEEEecCCCCCccHHHHHH
Confidence 36999999999999998899999999999999999999999999996 5874 99999999999999999999999999
Q ss_pred HHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHH
Q 019862 147 VDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVL 226 (334)
Q Consensus 147 ~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l 226 (334)
++.+|+||+++||.+|||.++ +|||||+++|+|+++||++|||+||||||||||||||+|||+||++++|
T Consensus 78 ~~~lr~~~ke~Gi~~~~~~g~----------~GI~H~v~pE~G~~~PG~~Iv~gDSHT~T~GAfGAfA~GiGttdva~vl 147 (423)
T COG0065 78 QKELRENAKEFGIVNFYDVGD----------QGIVHQVGPEQGLTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVL 147 (423)
T ss_pred HHHHHHHHHHhCCeeeecCCC----------CcEEEEEeccccccCCCcEEEecccCcccchhhhhhhccccHHHHHHHH
Confidence 999999999999999999873 7999999999999999999999999999999999999999999999999
Q ss_pred hcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeee
Q 019862 227 GTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV 306 (334)
Q Consensus 227 ~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~ 306 (334)
+||++||++||+++|+++|+||+||+||||||+||+++|.+|++|+++||+|+.+++|||++|||||||++|+|||+|||
T Consensus 148 atg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme~RmTicNMaIE~GAkaGii 227 (423)
T COG0065 148 ATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGII 227 (423)
T ss_pred HhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChhhhhhhhhhhhhhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHhhhcCC--CCCccccCCCCCC
Q 019862 307 PADGTTFKYLEDKTS--LPYEPVYSDEKAR 334 (334)
Q Consensus 307 ~pDe~t~~YL~~r~~--~~~~~~~sD~dA~ 334 (334)
+||++|++||+.+.. ..|+.+++|+||.
T Consensus 228 ~pDe~T~~Y~k~~~~a~~~~~~l~sD~dA~ 257 (423)
T COG0065 228 APDETTFEYLKEWDGAVAYWKTLKSDEDAV 257 (423)
T ss_pred CCcHhHHHHHHHHhccccccceecCCCCCc
Confidence 999999999997765 7899999999984
No 2
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=1.3e-86 Score=660.26 Aligned_cols=254 Identities=39% Similarity=0.750 Sum_probs=246.1
Q ss_pred CcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHH
Q 019862 69 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 148 (334)
Q Consensus 69 mTl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~~~a~~~~ 148 (334)
|||+||||++|++++.|+|||+|++++|++|+||.|+|++++.|++ +|. .+||||+|+++++||++|+.+.+.+++++
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~~-~g~-~~V~dp~~v~~~~DH~vpa~~~~~a~~~~ 78 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFKE-YGG-KKVFDPDRVALVPDHFTPNKDIKSAEQCK 78 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHHHH-cCC-CcCCCCCCEEEEeCCCCCCCCHHHHHHHH
Confidence 7999999999999888999999999999999999999999999964 773 79999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHHhc
Q 019862 149 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 228 (334)
Q Consensus 149 ~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l~t 228 (334)
.+|+|++++||++|||.++ +|||||+++|+|+++||+++||+||||||+||||+||||+|+||++.+|+|
T Consensus 79 ~~r~fa~~~gi~~f~d~g~----------~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~Ga~Ga~a~GvG~td~a~~lat 148 (419)
T TIGR02083 79 MMREFAREQGIEKFFEIGN----------MGIEHALLPEEGIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMAT 148 (419)
T ss_pred HHHHHHHHcCCcceecCCC----------cceeeeeccccCccCCCeEEEecCCCccccCccceeEEccChHHHHHHHhc
Confidence 9999999999998898752 599999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeeecC
Q 019862 229 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 308 (334)
Q Consensus 229 G~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~p 308 (334)
|++||+|||||+|+|+|+|++||++|||||+|+++++.+|++|++|||.|+++++||+++|||||||++|+||++|||||
T Consensus 149 g~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~~R~Tl~NMa~E~GA~~~i~~~ 228 (419)
T TIGR02083 149 GKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFPV 228 (419)
T ss_pred CCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccccCceeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhcCCCCCccccCCCCCC
Q 019862 309 DGTTFKYLEDKTSLPYEPVYSDEKAR 334 (334)
Q Consensus 309 De~t~~YL~~r~~~~~~~~~sD~dA~ 334 (334)
|++|++||+.|+.++|+.+.+|+||.
T Consensus 229 D~~t~~yL~~r~~~~~~~~~~D~dA~ 254 (419)
T TIGR02083 229 DEITIEYEKGRGKREEKIYKADEDAK 254 (419)
T ss_pred ChHHHHHHhhCCccchhcccCCCCCC
Confidence 99999999999888999999999984
No 3
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=1.6e-84 Score=644.98 Aligned_cols=251 Identities=42% Similarity=0.757 Sum_probs=243.3
Q ss_pred cHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHHH
Q 019862 70 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDI 149 (334)
Q Consensus 70 Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~~~a~~~~~ 149 (334)
||+||||++|+++ .|++||++++++|++|+||.|+|++++.|++ +|. .+||||+|+++++||++|+.+.+++++++.
T Consensus 1 Tl~eKIl~~h~~~-~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~~-~g~-~~v~~P~~v~~~~DH~~p~~~~~~a~~~~~ 77 (412)
T TIGR01343 1 TIAEKILSKHSGK-EVYAGDLIVAEIDQAMVHDITAPLAIRRLEE-YGI-DKVFDPERIVIVVDHVVPASTIKAAEMQKL 77 (412)
T ss_pred CHHHHHHHHhcCC-ccCCCCEEEEECCEEEEecccHHHHHHHHHH-cCC-CcCCCCCcEEEEcCCCCCCCChhHHHHHHH
Confidence 8999999999998 5899999999999999999999999999964 874 799999999999999999999999999999
Q ss_pred HHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHHhcc
Q 019862 150 LRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTG 229 (334)
Q Consensus 150 lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tG 229 (334)
+|+||+++||++||+. ++|||||+++|+|+++||++++|+||||||+||||+||||||+||++.+|+||
T Consensus 78 ~r~fa~~~gi~~~~~~-----------g~GI~H~v~~E~g~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~~atg 146 (412)
T TIGR01343 78 AREFVKKTGIKHFFDV-----------GEGICHQVLPEEGLVKPGDLVVGADSHTCTYGALGAFATGMGSTDIAYAIATG 146 (412)
T ss_pred HHHHHHHcCCceeecC-----------CCCEEEEEchhhCcCCCCcEEEecCCCcCCcCchhheeecccHHHHHHHHhcC
Confidence 9999999999988865 47999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeeecCC
Q 019862 230 KVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPAD 309 (334)
Q Consensus 230 ~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~pD 309 (334)
++||+|||+|+|+|+|+|++||++|||||+||+++|.+|++|++|||.|+++++||+++|||||||++|+||++||||+|
T Consensus 147 ~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R~ti~NMa~E~GA~~~i~~~D 226 (412)
T TIGR01343 147 KTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEERMTLANMAIEAGGKTGIIEPD 226 (412)
T ss_pred cEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHHhhhhccccccCceeeEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCCCccccCCCCCC
Q 019862 310 GTTFKYLEDKTSLPYEPVYSDEKAR 334 (334)
Q Consensus 310 e~t~~YL~~r~~~~~~~~~sD~dA~ 334 (334)
++|++||+.|++.+|+.+.+|+||.
T Consensus 227 e~t~~yl~~~~~~~~~~~~~D~da~ 251 (412)
T TIGR01343 227 EKTRAYLKERYKEPFRVYKSDEDAE 251 (412)
T ss_pred HHHHHHHHhhCcccccccCCCCCCC
Confidence 9999999999888999999999984
No 4
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=3.3e-84 Score=643.71 Aligned_cols=254 Identities=49% Similarity=0.844 Sum_probs=245.5
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHH
Q 019862 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRN 146 (334)
Q Consensus 67 ~~mTl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~~~a~~ 146 (334)
|||||+||||++|+++. +++||++++++|++|+||.|+|++++.|++ +| ..+||||+|+++++||++|+.+.+++++
T Consensus 1 m~~Tl~eKIl~~h~~~~-v~~G~~v~v~vD~~~~hD~t~p~a~~~~~~-~g-~~~v~~P~~~~~~~DH~~p~~~~~~a~~ 77 (418)
T PRK00402 1 MGMTLAEKILARHSGRD-VSPGDIVEAKVDLVMAHDITGPLAIKEFEK-IG-GDKVFDPSKIVIVFDHFVPAKDIKSAEQ 77 (418)
T ss_pred CCcCHHHHHHHHhcCCC-CCCCCEEEEECCEEEEecccHHHHHHHHHH-cC-CCccCCCCcEEEECCCCCCCCChhhHHH
Confidence 68999999999999976 789999999999999999999999999964 77 4799999999999999999999999999
Q ss_pred HHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHH
Q 019862 147 VDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVL 226 (334)
Q Consensus 147 ~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l 226 (334)
++.+|+||+++||++||+.+ +|||||+++|+|+++||++|||+||||||+||||+||||||+||++.+|
T Consensus 78 ~~~~r~fa~~~gi~~~~~~g-----------~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~GalG~~a~GvG~td~~~~l 146 (418)
T PRK00402 78 QKILREFAKEQGIPNFFDVG-----------EGICHQVLPEKGLVRPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAM 146 (418)
T ss_pred HHHHHHHHHHcCCcceeCCC-----------CCEeeEehhhcCccCCCcEEEeCCCCccccCccceEEecccHHHHHHHH
Confidence 99999999999998788754 6999999999999999999999999999999999999999999999999
Q ss_pred hcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeee
Q 019862 227 GTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV 306 (334)
Q Consensus 227 ~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~ 306 (334)
+||++||+|||+|+|+|+|+|++||++|||||+||++++.+|++|++|||.|++|++||+++|||||||++|+||++|||
T Consensus 147 ~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NM~~E~GA~~~i~ 226 (418)
T PRK00402 147 ATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMDERMTLANMAIEAGAKAGIF 226 (418)
T ss_pred hcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHHHHhhhhhcccccCceeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHhhhcCCCCCccccCCCCCC
Q 019862 307 PADGTTFKYLEDKTSLPYEPVYSDEKAR 334 (334)
Q Consensus 307 ~pDe~t~~YL~~r~~~~~~~~~sD~dA~ 334 (334)
|+|++|++||+.++..+|+.+.+|+||.
T Consensus 227 ~~D~~t~~yl~~~~~~~~~~l~~D~~a~ 254 (418)
T PRK00402 227 APDEKTLEYLKERAGRDYKPWKSDEDAE 254 (418)
T ss_pred cCChHHHHHHHhhcccccccccCCCCCC
Confidence 9999999999999888999999999984
No 5
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=9.3e-84 Score=639.51 Aligned_cols=250 Identities=44% Similarity=0.737 Sum_probs=241.9
Q ss_pred CcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHH
Q 019862 69 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD 148 (334)
Q Consensus 69 mTl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~~~a~~~~ 148 (334)
|||+||||++|++++ +++||++++++|++|+||.|+|++++.|++ +| .+||||+++++++||++|+.+.+.+++++
T Consensus 1 ~Tl~eKIl~~h~~~~-v~~G~~v~~~vD~~~~hD~t~p~a~~~~~~-~g--~~v~~p~~~~~~~DH~~p~~~~~~a~~~~ 76 (412)
T TIGR02086 1 MTLAEKILSEKVGRP-VEAGEIVEVEVDLAMAHDGTGPLAIETLRE-LG--ARVEDPEKIVIFFDHVVPPPTVEAANRQK 76 (412)
T ss_pred CCHHHHHHHHhcCCc-cCCCCEEEEECCEEEEecccHHHHHHHHHH-cC--CcccCCCCEEEECCCCCCCCCHHHHHHHH
Confidence 799999999999886 899999999999999999999999999964 77 68999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHHhc
Q 019862 149 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT 228 (334)
Q Consensus 149 ~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l~t 228 (334)
.+|+||+++||++ |+ +++|||||+++|+|+++||++|||+||||||+||||+||||+|+||++++|+|
T Consensus 77 ~~r~fa~~~gi~~-~~-----------~g~GI~H~v~~E~G~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~lat 144 (412)
T TIGR02086 77 EIREFAKEHGIPV-FD-----------VGEGICHQVLVEEGYAGPGMVVVGGDSHTCTSGAVGAFATGMGATDVAIALAT 144 (412)
T ss_pred HHHHHHHHcCCcE-EC-----------CCCCeEeEEhhhcCccCCCcEEEecCCCccccchhhheeecccHHHHHHHHhc
Confidence 9999999999984 65 45899999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeeecC
Q 019862 229 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 308 (334)
Q Consensus 229 G~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~p 308 (334)
|++||+|||+|+|+|+|+|++||++|||||+||++|+.+|++|++|||.|++|++||+++|||||||++|+||++||||+
T Consensus 145 g~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~~i~~~ 224 (412)
T TIGR02086 145 GKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDERMTLCNMAVEAGAKAGIVVP 224 (412)
T ss_pred CCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHHhhhhhcccccCceeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhcCCCCCccccCCCCCC
Q 019862 309 DGTTFKYLEDKTSLPYEPVYSDEKAR 334 (334)
Q Consensus 309 De~t~~YL~~r~~~~~~~~~sD~dA~ 334 (334)
|++|++||+.|++.+|+.+++|+||.
T Consensus 225 D~~t~~yl~~~~~~~~~~~~~D~~a~ 250 (412)
T TIGR02086 225 DEETYEYLKKRRGYEFRILRPDPGAK 250 (412)
T ss_pred CHHHHHHHHhcCCcccccccCCCCCC
Confidence 99999999999988899999999984
No 6
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=1.6e-83 Score=646.67 Aligned_cols=254 Identities=34% Similarity=0.547 Sum_probs=240.2
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCc------
Q 019862 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSD------ 140 (334)
Q Consensus 67 ~~mTl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~------ 140 (334)
|+|||+||||++|+++. ++||.++++||++|+||+|+|++++.|++ +| .+||||+|+++++||++|+.+
T Consensus 1 M~~Tl~eKI~~~h~~~~--~~g~~v~~~vD~~~~hD~t~~~a~~~~~~-~g--~~v~~p~~~~~~~DH~vp~~~~~~~~~ 75 (465)
T TIGR00170 1 MPRTLYEKLFDAHIVYE--AEGETPLLYIDRHLIHEVTSPQAFEGLRQ-AG--RKVRRPQKTFATMDHNIPTQNRDFNIK 75 (465)
T ss_pred CCCCHHHHHHHHhcCCC--CCCCEEEEEeeeeeecccchHHHHHHHHH-cC--CCcCCCcCEEEEeCCCCCCCCcccccc
Confidence 68999999999999885 58999999999999999999999999965 66 589999999999999999986
Q ss_pred -HHHHHHHHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCch
Q 019862 141 -ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 219 (334)
Q Consensus 141 -~~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~ 219 (334)
...+++++++|+|++++||+ ||+++ ||++|||||+++|+|+++||++|||+||||||+||||+||||||+
T Consensus 76 ~~~~~~~~~~~r~~a~~~gi~-~~~v~--------~p~~GI~Hqv~~E~g~~~PG~~ivgtDSHT~t~GalGala~GvG~ 146 (465)
T TIGR00170 76 DEVAKIQVTELEKNCKEFGVR-LFDLH--------SVDQGIVHVMGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGT 146 (465)
T ss_pred CHHHHHHHHHHHHHHHHhCCe-eeccC--------CCCCCEeCeEccccCcccCCceEEecCCCccccccccceEEccCH
Confidence 47888899999999999995 67654 788999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhc
Q 019862 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEA 299 (334)
Q Consensus 220 td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~ 299 (334)
||++++|+||++||+|||+|+|+|+|+|++||++|||||+|+++||.+|++|++|||+|+||++||+++|||||||++|+
T Consensus 147 te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~~R~Ti~NMa~E~ 226 (465)
T TIGR00170 147 SEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNMAIEA 226 (465)
T ss_pred HHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHHHhhhhhhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEeeecCChhHHHHhhhcCC-----------CCCccccCCCCCC
Q 019862 300 GGKNGVVPADGTTFKYLEDKTS-----------LPYEPVYSDEKAR 334 (334)
Q Consensus 300 GAk~gi~~pDe~t~~YL~~r~~-----------~~~~~~~sD~dA~ 334 (334)
||++||||+|++|++||+.|++ ..|+.+++|+||.
T Consensus 227 GA~~gi~~~D~~t~~yl~~r~~~~~~~~~~~~~~~~~~l~~d~~a~ 272 (465)
T TIGR00170 227 GARAGLIAPDETTFEYCKGRPHAPKGKEFDKAVAYWKTLKTDEGAV 272 (465)
T ss_pred CceeeEecCChhHHHHHhcCCcccchhHHHHHHHhhhhccCCCCCc
Confidence 9999999999999999998865 2388899999984
No 7
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=3.4e-83 Score=645.13 Aligned_cols=254 Identities=35% Similarity=0.574 Sum_probs=241.9
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCc------
Q 019862 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSD------ 140 (334)
Q Consensus 67 ~~mTl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~------ 140 (334)
|+|||+||||++|++++ +++| +|+++||++|+||+|+|++++.|++ +| .+||||+++++++||++|+.+
T Consensus 2 m~~Tl~eKI~~~h~~~~-~~~g-~v~~~vD~~~~hD~t~p~a~~~~~~-~g--~~v~~P~~~~~~~DH~vp~~~~~~~~~ 76 (471)
T PRK12466 2 MPRTLYDKLWDSHTVAR-LDDG-HVLLYIDRHLLNEYTSPQAFSGLRA-RG--RTVRRPDLTLAVVDHVVPTRPGRDRGI 76 (471)
T ss_pred CCcCHHHHHHHHhcCCC-CCCC-EEEEeccEEEEeccccHHHHHHHHH-cC--CcccCCCCeEEEeCCCCCCCccccccc
Confidence 78999999999999986 7777 9999999999999999999999965 66 489999999999999999998
Q ss_pred --HHHHHHHHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCc
Q 019862 141 --ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIG 218 (334)
Q Consensus 141 --~~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG 218 (334)
..++++++++|+||+++||+ ||+++ ||++|||||+++|+|+++||++|||+||||||+||||+||||||
T Consensus 77 ~~~~~~~~~~~~r~~a~~~gi~-~~~~~--------~p~~GI~Hqv~~E~G~~~PG~~ivg~DSHT~t~GalGala~GvG 147 (471)
T PRK12466 77 TDPGGALQVDYLRENCADFGIR-LFDVD--------DPRQGIVHVVAPELGLTLPGMVIVCGDSHTTTYGALGALAFGIG 147 (471)
T ss_pred cCHHHHHHHHHHHHHHHHcCCe-eeccC--------CCCCCEEeEEccccCcccCCceEEccCCCcCCcChhhheEEccC
Confidence 88999999999999999995 67764 68899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhh
Q 019862 219 NTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298 (334)
Q Consensus 219 ~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E 298 (334)
+||++++|+||++||+|||+|+|+|+|+|++||++|||||+||++||.+|++|++|||+||+|++||+++|||||||++|
T Consensus 148 ~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~~~R~Ti~NMa~E 227 (471)
T PRK12466 148 TSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSMEGRMTLCNMAVE 227 (471)
T ss_pred HHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEeeecCChhHHHHhhhcCC-----------CCCccccCCCCCC
Q 019862 299 AGGKNGVVPADGTTFKYLEDKTS-----------LPYEPVYSDEKAR 334 (334)
Q Consensus 299 ~GAk~gi~~pDe~t~~YL~~r~~-----------~~~~~~~sD~dA~ 334 (334)
+||++||||+|++|++||+.|++ ..|+.+++|+||.
T Consensus 228 ~GA~~gi~~~D~~t~~yl~~~~~~~~~~~~~~~~~~~~~~~~D~~a~ 274 (471)
T PRK12466 228 AGARGGLIAPDETTFDYLRGRPRAPKGALWDAALAYWRTLRSDADAV 274 (471)
T ss_pred cCceEEEecCChHHHHHHHhCCCchhHHHHHHHHhhhhcccCCCCCc
Confidence 99999999999999999999875 3588899999984
No 8
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=2.7e-82 Score=638.32 Aligned_cols=254 Identities=35% Similarity=0.555 Sum_probs=240.9
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcH-----
Q 019862 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDE----- 141 (334)
Q Consensus 67 ~~mTl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~----- 141 (334)
|+|||+||||++|++++ + +||+++++||++|+||.|+|++++.|++ +| .+||||+|+++++||++|+.+.
T Consensus 1 m~~tl~eKIl~~h~~~~-~-~g~~v~~~vD~~~~hD~t~~~a~~~~~~-~g--~~v~~p~~~~~~~DH~v~~~~~~~~~~ 75 (466)
T PRK05478 1 MGKTLYDKLWDAHVVHE-E-EDGPDLLYIDRHLVHEVTSPQAFEGLRL-AG--RKVRRPDLTFATMDHNVPTTDRDLPIA 75 (466)
T ss_pred CCCCHHHHHHHHhcCCC-C-CCCEEEEEeccceeecccHHHHHHHHHH-cC--CCccCCCCeEEEcCCCCCCCccccccc
Confidence 68999999999999986 3 9999999999999999999999999965 66 4899999999999999999887
Q ss_pred --HHHHHHHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCch
Q 019862 142 --RANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 219 (334)
Q Consensus 142 --~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~ 219 (334)
..+++++++|+||+++||+ ||+.+ ||++|||||+++|+|+++||++|||+||||||+||||+||||||+
T Consensus 76 ~~~~~~~~~~~r~~a~~~gi~-~~~~~--------~~~~GI~Hqv~~E~g~~~PG~~ivGtDSHT~t~GalGa~a~GvG~ 146 (466)
T PRK05478 76 DPVSRIQVETLEKNCKEFGIT-LFDLG--------DPRQGIVHVVGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGT 146 (466)
T ss_pred CHHHHHHHHHHHHHHHHcCCe-eeccC--------CCCCCEeCeEccccccccCCceEEecCCCccccchhhheEeCCCH
Confidence 7889999999999999995 67654 688999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhc
Q 019862 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEA 299 (334)
Q Consensus 220 td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~ 299 (334)
+|++.+|+||++||+|||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+||||++||+++|+|||||++|+
T Consensus 147 td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~~R~Ti~NMa~E~ 226 (466)
T PRK05478 147 SEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSMEGRMTICNMSIEA 226 (466)
T ss_pred HHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHHHHhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEeeecCChhHHHHhhhcCCC-----------CCccccCCCCCC
Q 019862 300 GGKNGVVPADGTTFKYLEDKTSL-----------PYEPVYSDEKAR 334 (334)
Q Consensus 300 GAk~gi~~pDe~t~~YL~~r~~~-----------~~~~~~sD~dA~ 334 (334)
||++||||+|++|++||+.|... .|+.+++|+||+
T Consensus 227 GA~~~i~~~De~t~~yl~~r~~~~~~~~~~~a~~~~~~l~~D~~a~ 272 (466)
T PRK05478 227 GARAGLVAPDETTFEYLKGRPFAPKGEDWDKAVAYWKTLKSDEDAV 272 (466)
T ss_pred CceeeeecCCHhHHHHHhcCCccccHHHHHHHHHhhhcccCCCCCc
Confidence 99999999999999999987653 588899999984
No 9
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=5e-80 Score=622.54 Aligned_cols=251 Identities=43% Similarity=0.735 Sum_probs=211.0
Q ss_pred cHHHHHHHHhcCCCC-CCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcH-------
Q 019862 70 TLTEKIFSRASEKPQ-LSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDE------- 141 (334)
Q Consensus 70 Tl~EKIla~h~~~~~-v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~------- 141 (334)
||+||||++|++... ..+|++|.++||++|+||+|+|++++.|++ +| .++++|+++++++||++|+.+.
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~-~g--~~v~~p~~v~~~~DH~vp~~~~~~~~~~~ 77 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRA-MG--EKVRDPDKVVLVIDHSVPADDIGSANLQI 77 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHH-HC--HCCHSTTSEEEE--SS--BSS-HHHHHHH
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHH-CC--CceecCCCceEEecCccccccccchhcch
Confidence 899999999999876 467899999999999999999999999974 76 4789999999999999999986
Q ss_pred ---HHHHHHHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCc
Q 019862 142 ---RANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIG 218 (334)
Q Consensus 142 ---~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG 218 (334)
++.+.++++|+|++++|+.+ |+. ++.|||||+++|+|+++||++|||+||||||+||||+||||||
T Consensus 78 ~~~~n~~~~~~l~~~~~~~gi~~-~~~----------~~~GI~Hqv~~E~g~~~PG~~vvg~DSHT~t~GalGa~a~GvG 146 (465)
T PF00330_consen 78 EDARNRERYRFLRWFAKEFGIKF-FDP----------GGPGICHQVLPEEGLVLPGMTVVGTDSHTCTYGALGAFATGVG 146 (465)
T ss_dssp HHHHCHHHHHHHHHHHHHCTTEE-EET----------TSSBSHHHHHHHHTT-STTEEEEESSTTGGGGGGGTSEEEE--
T ss_pred hhHHHHHHHHHHHHHHHHcCCce-ecC----------CCCCeeeeeehhhccccceeEEEeCCCCcchhhhceeEEeccC
Confidence 45566788999999999975 553 3459999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhh
Q 019862 219 NTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298 (334)
Q Consensus 219 ~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E 298 (334)
+||++++|+||++||+|||+|+|+|+|+|++||++|||||+||++||.+|++|++|||+||+|++||+++|||||||++|
T Consensus 147 ~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E 226 (465)
T PF00330_consen 147 STDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMDDRMTICNMAIE 226 (465)
T ss_dssp HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HHHHHHHHHCGGH
T ss_pred HHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEeeecCChhHHHHhhhcCCCC-----------CccccCCCCCC
Q 019862 299 AGGKNGVVPADGTTFKYLEDKTSLP-----------YEPVYSDEKAR 334 (334)
Q Consensus 299 ~GAk~gi~~pDe~t~~YL~~r~~~~-----------~~~~~sD~dA~ 334 (334)
+||++||||||++|++||+.|++.+ |+.+++|+||+
T Consensus 227 ~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~~D~dA~ 273 (465)
T PF00330_consen 227 MGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLKSDPDAE 273 (465)
T ss_dssp HTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS--TT--
T ss_pred cCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhccCCCccC
Confidence 9999999999999999999987643 67899999984
No 10
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=3.4e-78 Score=630.10 Aligned_cols=237 Identities=29% Similarity=0.515 Sum_probs=226.8
Q ss_pred CCcHHHHHHHHhc-----CCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHH
Q 019862 68 AMTLTEKIFSRAS-----EKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDER 142 (334)
Q Consensus 68 ~mTl~EKIla~h~-----~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~~ 142 (334)
||||+||||++|+ ++ .|++||+|+++||++|+||.|+|++++ |. ++| ..+||+|+++++++||++|+.+.+
T Consensus 1 ~~Tl~EKIl~~h~v~~~~g~-~v~~G~~i~i~vD~~l~hD~t~p~~~~-~~-~~g-~~~V~~p~~~v~~~DH~v~~~~~~ 76 (712)
T TIGR00139 1 GQNLTEKIVQKYAVGLPEGK-FVHSGDYVSIKPAHCMSHDNSWPCALK-FM-GIG-ASKIHNPDQIVMTLDHDIQNKSDK 76 (712)
T ss_pred CCCHHHHHHHHhcccccCCc-ccCCCCEEEEecCEEEEEeccHHHHHH-HH-HcC-CCccCCCCCEEEEcCCCCCCCCHH
Confidence 5899999999998 43 588999999999999999999999988 43 488 489999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHH
Q 019862 143 ANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDA 222 (334)
Q Consensus 143 ~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~ 222 (334)
++++++++|+||+++||+ ||+ |++|||||+++|+||++||+++||+||||||+||||+||||+|+||+
T Consensus 77 ~~~~~~~l~~fAkk~Gi~-f~~-----------~g~GI~Hqv~~E~g~a~PG~~ivGsDSHT~t~GalGala~GvG~tDv 144 (712)
T TIGR00139 77 NLKKYKNIEEFAKKHGID-FYP-----------AGRGIGHQIMIEEGFAFPGNLAVASDSHSNMYGGLGCLGTPIVRTDA 144 (712)
T ss_pred HHHHHHHHHHHHHHhCCe-EEC-----------CCCCeEeEeecccCcccCCeEEEccCcCcCccchhhheeeccchHHH
Confidence 999999999999999995 664 56899999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEec--ccccCCCHHhHHhhhhhhhhcC
Q 019862 223 GFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVG--TTVERLSMEERMTLCNMVVEAG 300 (334)
Q Consensus 223 a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G--~gv~~Ls~~eR~Tl~NMa~E~G 300 (334)
+.+|+||++||+|||+|+|+|+|+||+||++|||||+|+++|+.+|++|++|||+| +||++||+++|||||||++|+|
T Consensus 145 a~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~~Ls~~~R~TI~NM~~E~G 224 (712)
T TIGR00139 145 AAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLNALPIDHRLTIANMTTEWG 224 (712)
T ss_pred HHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhhcCCHHHHhhHhhhhHhhC
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceEeeecCChhHHHHhhhcC
Q 019862 301 GKNGVVPADGTTFKYLEDKT 320 (334)
Q Consensus 301 Ak~gi~~pDe~t~~YL~~r~ 320 (334)
|++||||+|++|++||+.++
T Consensus 225 A~tgifp~De~t~~yL~~~~ 244 (712)
T TIGR00139 225 ALSGLFPIDKTLIDWLKGKA 244 (712)
T ss_pred ceeeEecCChHHHHHHHhcC
Confidence 99999999999999999874
No 11
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=3.8e-77 Score=588.15 Aligned_cols=225 Identities=50% Similarity=0.852 Sum_probs=216.2
Q ss_pred EEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCcceeeeccccCCcccCCC
Q 019862 97 ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPD 176 (334)
Q Consensus 97 ~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp 176 (334)
++|+||+|+|++++.|++ +|. .+||||+|+++++||++|+.+..++++++++|+|++++||+ ||+..
T Consensus 1 ~~~~hD~t~p~a~~~~~~-~g~-~~v~dp~k~~~~~DH~vp~~~~~~~~~~~~~r~~a~~~gi~-~~~~~---------- 67 (382)
T cd01583 1 LHLVHDVTSPQAFEGLRE-AGR-EKVWDPEKIVAVFDHNVPTPDIKAAEQVKTLRKFAKEFGIN-FFDVG---------- 67 (382)
T ss_pred CEEEEeccHHHHHHHHHH-hCC-cccCCCCceEEEcCCCCCCCCHHHHHHHHHHHHHHHHhCcc-cccCC----------
Confidence 478999999999999964 774 68999999999999999999999999999999999999995 67752
Q ss_pred CCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHH
Q 019862 177 YKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDL 256 (334)
Q Consensus 177 ~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDl 256 (334)
++|||||+++|+|+++||++|+|+||||||+||||+||||||+||++++|+||++||+|||+|+|+|+|+|++||++|||
T Consensus 68 g~GI~H~v~~E~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~vPeti~v~l~G~l~~gV~aKDv 147 (382)
T cd01583 68 RQGICHVILPEKGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDV 147 (382)
T ss_pred CCCEeeEEeccccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeCCcEEEEEEEeecCCCcCHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeeecCChhHHHHhhhcCCCCCccccCCCCCC
Q 019862 257 ILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKAR 334 (334)
Q Consensus 257 iL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~pDe~t~~YL~~r~~~~~~~~~sD~dA~ 334 (334)
||+||++||.+|++|++|||.|++|++||+++|||||||++|+|||+|||||||+|++||+.|++.+|+.+++|+||.
T Consensus 148 iL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~yL~~~~~~~~~~~~~D~~a~ 225 (382)
T cd01583 148 ILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAYWKELKSDEDAE 225 (382)
T ss_pred HHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHHHHhcCccchhhcCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985
No 12
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=9.9e-77 Score=618.01 Aligned_cols=249 Identities=29% Similarity=0.459 Sum_probs=237.5
Q ss_pred cHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHHH
Q 019862 70 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDI 149 (334)
Q Consensus 70 Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~~~a~~~~~ 149 (334)
||+||||++|+++..|++|++|+++||++++||.|+|+++..|++ +|. ++++ |+++++++||++|+.+.++++++++
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~-~g~-~~v~-~~~~~~~~DH~~~~~d~~~a~~~~~ 77 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEA-LEM-DEVK-TELAAQYCDHNMLQFDFKNADDHKF 77 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHH-cCC-CccC-CCCeEEECCCCCCCCChhhHHHHHH
Confidence 899999999999877999999999999999999999999999964 874 6776 8999999999999999999999999
Q ss_pred HHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHHhcc
Q 019862 150 LRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTG 229 (334)
Q Consensus 150 lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tG 229 (334)
+|+||+++|+. ||+ |++|||||+++|+ +++||++|||+||||||+||||+||||+|++|++++|+||
T Consensus 78 l~~~a~~~gi~-~~~-----------pg~GI~Hqv~~E~-~a~PG~~ivGtDSHT~t~GalG~la~GvG~td~a~~matg 144 (658)
T TIGR01342 78 LMSAAGKFGAW-FSK-----------PGNGICHNVHKEN-FAAPGKTLLGSDSHTPTAGGLGMLAIGAGGIDIAAAMAGE 144 (658)
T ss_pred HHHHHHHhCCe-EEC-----------CCCCEEeeEchhh-ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCC
Confidence 99999999995 664 5689999999988 9999999999999999999999999999999999999999
Q ss_pred eEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeeecCC
Q 019862 230 KVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPAD 309 (334)
Q Consensus 230 ~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~pD 309 (334)
++||+|||+|+|+|+|+|++||++|||||+|+++++.+|++|++|||+|||+++||+++|||||||++|+||++||||+|
T Consensus 145 ~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~D 224 (658)
T TIGR01342 145 AFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSD 224 (658)
T ss_pred cEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHHhhhhccchhhCceEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCC-CCCccccCCCCCC
Q 019862 310 GTTFKYLEDKTS-LPYEPVYSDEKAR 334 (334)
Q Consensus 310 e~t~~YL~~r~~-~~~~~~~sD~dA~ 334 (334)
++|++||+.+++ .+|..+.+|+||.
T Consensus 225 ~~t~~yl~~~~r~~~~~~l~~D~~a~ 250 (658)
T TIGR01342 225 DITEAWLAAFDREDDFVDLLADADAE 250 (658)
T ss_pred HHHHHHHHhcCCchheeeccCCCCCc
Confidence 999999999866 4689999999984
No 13
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=1.4e-76 Score=616.87 Aligned_cols=252 Identities=30% Similarity=0.504 Sum_probs=239.7
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHH
Q 019862 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRN 146 (334)
Q Consensus 67 ~~mTl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~~~a~~ 146 (334)
|||||+||||++|+++..|++|+.|+++||++++||.|+|+++..|++ +|. +++|+|..+ +++||++|+.+.++++.
T Consensus 1 m~~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~-~G~-~~~~~p~~~-~~~DH~~~~~~~~~~~~ 77 (646)
T PRK07229 1 MGLTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEA-MGL-DRVKTELSV-QYVDHNLLQADFENADD 77 (646)
T ss_pred CCcCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHH-cCC-CcCCCCCeE-EECCCCCCCCChhhHHH
Confidence 689999999999999877999999999999999999999999999964 884 789999766 78999999999999999
Q ss_pred HHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHH
Q 019862 147 VDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVL 226 (334)
Q Consensus 147 ~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l 226 (334)
++++|+|++++||+ ||+ |++|||||+++|+ +++||+++||+||||||+||||+||||||++|++++|
T Consensus 78 ~~~l~~~a~~~gi~-~~~-----------~g~GI~Hqv~~E~-~a~PG~~ivGtDSHT~~~GalG~la~GvG~~d~~~~m 144 (646)
T PRK07229 78 HRFLQSVAAKYGIY-FSK-----------PGNGICHQVHLER-FAFPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAM 144 (646)
T ss_pred HHHHHHHHHHhCCe-EEC-----------CCCCCcceehhhh-ccCCCCEEEeCCCCcCcCCcccccEEccCHHHHHHHH
Confidence 99999999999994 664 5689999999997 9999999999999999999999999999999999999
Q ss_pred hcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeee
Q 019862 227 GTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV 306 (334)
Q Consensus 227 ~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~ 306 (334)
+||++||++||+|+|+|+|+|++||++|||||+|+++++.+|++|++|||+|||+++||+++|||||||++|+||++|||
T Consensus 145 ~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if 224 (646)
T PRK07229 145 AGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNMGAELGATTSIF 224 (646)
T ss_pred hcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHHHHhhhhccccccCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHhhhcCC-CCCccccCCCCCC
Q 019862 307 PADGTTFKYLEDKTS-LPYEPVYSDEKAR 334 (334)
Q Consensus 307 ~pDe~t~~YL~~r~~-~~~~~~~sD~dA~ 334 (334)
|+|++|++||+.+++ ++|..+.+|+||.
T Consensus 225 ~~D~~t~~yL~~~gr~~~~~~l~~D~~a~ 253 (646)
T PRK07229 225 PSDERTREFLKAQGREDDWVELLADPDAE 253 (646)
T ss_pred cCcHHHHHHHHhcCCcccceeccCCCCCC
Confidence 999999999999866 4688999999984
No 14
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=1.4e-75 Score=614.49 Aligned_cols=251 Identities=29% Similarity=0.408 Sum_probs=231.3
Q ss_pred CCCcHHHHHHHHhcCCCC----------CCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCC
Q 019862 67 NAMTLTEKIFSRASEKPQ----------LSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYI 136 (334)
Q Consensus 67 ~~mTl~EKIla~h~~~~~----------v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~v 136 (334)
|||||+||||++|++++. |++||+|+++||++|+||+|+|+++..|++ +|. .++|+|. .+++||++
T Consensus 18 ~~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~-~g~-~~v~~P~--~v~~DH~~ 93 (745)
T TIGR01340 18 RPLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMT-CGL-PQVAVPA--SIHCDHLI 93 (745)
T ss_pred CCcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHH-cCC-CCCCCCC--eEEeCCCC
Confidence 789999999999998763 689999999999999999999999999964 774 7999996 45689999
Q ss_pred CCC-----cHH-----HHHHHHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcc
Q 019862 137 FTS-----DER-----ANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCT 206 (334)
Q Consensus 137 p~~-----~~~-----~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t 206 (334)
|+. +.+ +.++++++|+||+++||+ ||+ |++|||||+++|+ +++||+++||+||||||
T Consensus 94 ~~~~~~~~~~~~a~~~N~e~~~~lr~~a~~~gi~-~~~-----------~g~GI~Hqv~~E~-~a~PG~~ivGtDSHT~t 160 (745)
T TIGR01340 94 VGQKGGDKDLARAIATNKEVFDFLESAGKKYGIG-FWK-----------PGSGIIHQIVLEN-YAFPGLMMLGTDSHTPN 160 (745)
T ss_pred ccccCccccHHHHhHhHHHHHHHHHHHHHHCCCE-EEC-----------CCCCeeceEchhh-ccCCCCeEEccCCCccc
Confidence 876 433 447899999999999994 664 5689999999987 99999999999999999
Q ss_pred cCcccceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCH
Q 019862 207 AGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSM 286 (334)
Q Consensus 207 ~GAlGa~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~ 286 (334)
+||||+||||||++|++++|+++.+||+|||+|+|+|+|+|++||++|||||+|+++|+++|++|++|||+|+|+++||+
T Consensus 161 ~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~G~gv~~Ls~ 240 (745)
T TIGR01340 161 AGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYFGPGVESLSC 240 (745)
T ss_pred ccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEeCcccccCCH
Confidence 99999999999999999999977777999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhhhhhhcCceEeeecCChhHHHHhhhcCCCC-----------CccccCCCCCC
Q 019862 287 EERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP-----------YEPVYSDEKAR 334 (334)
Q Consensus 287 ~eR~Tl~NMa~E~GAk~gi~~pDe~t~~YL~~r~~~~-----------~~~~~sD~dA~ 334 (334)
++|||||||++|+||++||||+|++|++||+.+++.+ |+.+++|+||+
T Consensus 241 ~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~~~~~~D~~a~ 299 (745)
T TIGR01340 241 TGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSFFKLKADEGAQ 299 (745)
T ss_pred HHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhcccccCCCCCC
Confidence 9999999999999999999999999999999987653 67899999984
No 15
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=2.6e-75 Score=581.76 Aligned_cols=227 Identities=21% Similarity=0.213 Sum_probs=214.8
Q ss_pred HHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHHHH
Q 019862 71 LTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDIL 150 (334)
Q Consensus 71 l~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~~~a~~~~~l 150 (334)
|+||||++|++++.|+|||+|++++|++|+||.|+|++++.|++ +|. +||||+|+++++||++|+++.+++++++++
T Consensus 1 ~~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~~-~~~--~v~d~~~~v~~~DH~~p~~~~~~a~~~~~~ 77 (436)
T cd01581 1 LAQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELKE-LAC--LGFSADLVMQSFCHTAAYPKPVDVKTHRTL 77 (436)
T ss_pred ChHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHHH-cCC--cccCCccEEEEcCCCCCCCCHHHHHHHHHH
Confidence 58999999999988999999999999999999999999999975 763 899999999999999999999999999999
Q ss_pred HHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHHhcce
Q 019862 151 RDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK 230 (334)
Q Consensus 151 r~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tG~ 230 (334)
|+|++++||+ ||+. ++|||||+++| +++||++|||+||||||+|| ||||+|++|++.+|+||+
T Consensus 78 r~fa~~~gi~-~~~~-----------g~GI~Hqv~~e--~~~PG~~ivGtDSHT~t~ga---~a~GvG~td~a~~latG~ 140 (436)
T cd01581 78 PDFISNRGGV-ALRP-----------GDGVIHSWLNR--MLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGV 140 (436)
T ss_pred HHHHHHcCCc-EECC-----------CCCeeeeeehh--hccCCceEEeeccccCCCCc---eEEeecHHHHHHHHHhCe
Confidence 9999999994 7875 47999999987 58999999999999999987 899999999999999999
Q ss_pred EEeecCCeEEEEEEeeCCCCCCHHHHHHH----HHHH--------hcccCccceEEEEecccccCCCHHhHHhhhhhhhh
Q 019862 231 VLLKVPPTLRFVLDGEMPDYLLAKDLILQ----IIGE--------ISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298 (334)
Q Consensus 231 ~wlkvPetvrV~l~G~L~~gV~aKDliL~----ii~~--------lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E 298 (334)
+||+|||+|+|+|+|+|++||++|||||+ ||++ +|.+|++|++|||. |+++||+++|||||||++|
T Consensus 141 ~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~--Gv~~Ls~~~R~Ti~NMa~E 218 (436)
T cd01581 141 MPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE--GLPDLKVEQAFELTDASAE 218 (436)
T ss_pred eeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEEC--CcccCCHhHHHHHHhhhhh
Confidence 99999999999999999999999999997 5777 78888999999996 4999999999999999999
Q ss_pred cCceEeeecCChhH-HHHhhhc
Q 019862 299 AGGKNGVVPADGTT-FKYLEDK 319 (334)
Q Consensus 299 ~GAk~gi~~pDe~t-~~YL~~r 319 (334)
+|||+||||+|++| ++||+.|
T Consensus 219 ~GA~~gif~~De~t~~~yL~~~ 240 (436)
T cd01581 219 RSAAACTVRLDKEPVIEYLESN 240 (436)
T ss_pred hCceEEEecCCHhHHHHHHHhC
Confidence 99999999999988 8999987
No 16
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=1.6e-74 Score=568.65 Aligned_cols=223 Identities=29% Similarity=0.480 Sum_probs=213.3
Q ss_pred eEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCcceeeeccccCCcccCC
Q 019862 96 DILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANP 175 (334)
Q Consensus 96 D~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~p 175 (334)
|++|+||.|+|++++.|+ ++|. .+||+| ++++++||++|+++.+++++++++|+|++++||+ ||+
T Consensus 1 D~~~~hD~t~p~a~~~~~-~~g~-~~v~~~-~~~~~~DH~~p~~~~~~a~~~~~lr~~a~~~gi~-~~~----------- 65 (380)
T cd01585 1 DQTLTQDATGTMAYLQFE-AMGV-DRVRTE-LSVSYVDHNTLQTDFENADDHRFLQTVAARYGIY-FSR----------- 65 (380)
T ss_pred CceEEEeccHHHHHHHHH-HcCC-CeeCCC-CeEEEeCCCCCCCChHHHHHHHHHHHHHHHcCCE-EEC-----------
Confidence 789999999999999996 4884 789999 6999999999999999999999999999999995 675
Q ss_pred CCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHH
Q 019862 176 DYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKD 255 (334)
Q Consensus 176 p~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKD 255 (334)
|++|||||+++|+ +++||++|+|+||||||+||||+||||||+||++++|+||++||+|||+|+|+|+|+|++||++||
T Consensus 66 ~g~GI~H~v~~E~-~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~vPetv~V~l~G~l~~gV~aKD 144 (380)
T cd01585 66 PGNGICHQVHLER-FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKVVGVRLTGELPPWVTAKD 144 (380)
T ss_pred CCCCeeeeecHhh-ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccCCcEEEEEEEccCCCCcCHHH
Confidence 4589999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeeecCChhHHHHhhhcCC-CCCccccCCCCCC
Q 019862 256 LILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTS-LPYEPVYSDEKAR 334 (334)
Q Consensus 256 liL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~pDe~t~~YL~~r~~-~~~~~~~sD~dA~ 334 (334)
|||+||++|+.+|++|++|||.||++++||+++|||||||++|+|||+||||+||+|++||+.+++ ++|+.+.+|+||.
T Consensus 145 viL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~yl~~~gr~~~~~~l~~D~~a~ 224 (380)
T cd01585 145 VILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREFLAAQGREDDWVELAADADAE 224 (380)
T ss_pred HHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCchhccccCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999875 4789999999984
No 17
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=4.6e-73 Score=594.30 Aligned_cols=250 Identities=22% Similarity=0.224 Sum_probs=233.8
Q ss_pred CCCCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCC--cH
Q 019862 64 SVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS--DE 141 (334)
Q Consensus 64 ~~~~~mTl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~--~~ 141 (334)
...|.+||+||||++|++. .+||+|++++|++++||.|+|++++.|++ +|. .+| |+++++++||++|+. ..
T Consensus 30 ~~~~~~TlaeKIL~~h~~~---~~g~~v~~~vD~~~~~D~t~~~~~~~f~~-~G~-~~v--p~~~v~~~DH~~~~~~g~~ 102 (751)
T PRK11413 30 EEAKKGTIAWSILSSHNTS---GNMDKLKIKFDSLASHDITFVGIIQTAKA-SGM-ERF--PLPYVLTNCHNSLCAVGGT 102 (751)
T ss_pred HHHhhCCHHHHHHHHhhCC---CCCCEEEEEcceeeeehhhHHHHHHHHHH-cCC-CcC--CCCEEEECCCCCcCCCCCC
Confidence 4467899999999999985 48999999999999999999999999964 884 677 999999999999998 34
Q ss_pred HHHHHHHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhH
Q 019862 142 RANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTD 221 (334)
Q Consensus 142 ~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td 221 (334)
.++++|+++|+||+++||. || ||++|||||+++|+ +++||++|+|+||||+ +||||+||||+|++|
T Consensus 103 ~n~~~~~~~~~~a~k~Gi~-f~-----------~pg~GI~Hqv~~E~-~a~PG~~ivGtDSHT~-~GalG~la~GvGgtd 168 (751)
T PRK11413 103 INEDDHVFGLSAAQKYGGI-FV-----------PPHIAVIHQYMREM-MAGGGKMILGSDSHTR-YGALGTMAVGEGGGE 168 (751)
T ss_pred ccHHHHHHHHHHHHHcCCc-EE-----------CCCCCeECcCchhh-ccCCCcEEEeeCcCcc-cchhhhceeCCChHH
Confidence 5558999999999999994 66 46689999999988 9999999999999995 999999999999999
Q ss_pred HHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCc-cceEEEEecccccCCCHHhHHhhhhhhhhcC
Q 019862 222 AGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGA-TYKSMEFVGTTVERLSMEERMTLCNMVVEAG 300 (334)
Q Consensus 222 ~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~-~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~G 300 (334)
++.+|+++++||++||+|+|+|+|+|++||++|||||+||++++.+|+ +|++|||+||||++||+++|||||||++|+|
T Consensus 169 ~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R~TI~NM~~E~G 248 (751)
T PRK11413 169 LVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNGVDVMTTETT 248 (751)
T ss_pred HHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHHhhhhhcccccC
Confidence 999999999999999999999999999999999999999999999999 7999999999999999999999999999999
Q ss_pred ceEeeecCChhHHHHhhhcCC-CCCccccCCCCCC
Q 019862 301 GKNGVVPADGTTFKYLEDKTS-LPYEPVYSDEKAR 334 (334)
Q Consensus 301 Ak~gi~~pDe~t~~YL~~r~~-~~~~~~~sD~dA~ 334 (334)
|++||||+|++|++||+.+++ ++|+.+.+|+||.
T Consensus 249 A~~~ifp~De~t~~yL~~~gr~~~~~~l~~D~~A~ 283 (751)
T PRK11413 249 CLSSIWQTDEEVHNWLALHGRGQDYCELNPQPMAY 283 (751)
T ss_pred ceEEEecCcHHHHHHHHhCCChhhceeccCCCCCC
Confidence 999999999999999999886 4799999999984
No 18
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=1.5e-71 Score=552.30 Aligned_cols=221 Identities=29% Similarity=0.406 Sum_probs=203.9
Q ss_pred EEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCC-----cHHHH-----HHHHHHHHHHHHcCcceeeecc
Q 019862 97 ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS-----DERAN-----RNVDILRDFCMEQNIKYFYDIK 166 (334)
Q Consensus 97 ~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~-----~~~~a-----~~~~~lr~fa~~~gi~~f~d~~ 166 (334)
++|+||+|+|.+++.|+ ++| .+++|+|+ ++++||++|++ +.+.+ ++++++|+|++++||+ ||+
T Consensus 1 rv~~~D~tg~~a~~~f~-~~g-~~~v~~p~--~~~~DH~~~~~~~~~~~~~~a~~~n~~~~~~~r~~a~~~gi~-~~~-- 73 (412)
T cd01584 1 RVAMQDATAQMALLQFM-SSG-LPKVAVPS--TIHCDHLIEAQVGGEKDLKRAKDINKEVYDFLASAGAKYGIG-FWK-- 73 (412)
T ss_pred CeeEEecccHHHHHHHH-HhC-CCCCCCCC--eEEeCCCccccccCCCchhhhhhhhHHHHHHHHHHHHHcCCe-EEC--
Confidence 57899999999999996 488 47999999 55799999884 54444 5788899999999995 665
Q ss_pred ccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHHhcceEEeecCCeEEEEEEee
Q 019862 167 DLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGE 246 (334)
Q Consensus 167 ~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~ 246 (334)
|++|||||+++|+ +++||++|||+||||||+||||+||||||+||++++|+++.+||+|||+|+|+|+|+
T Consensus 74 ---------~g~GI~Hqv~~E~-~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vPe~i~v~l~G~ 143 (412)
T cd01584 74 ---------PGSGIIHQIVLEN-YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGK 143 (412)
T ss_pred ---------CCCCeeceEchhh-ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCCCEEEEEEEcc
Confidence 4589999999998 999999999999999999999999999999999999997777799999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeeecCChhHHHHhhhcCCCC---
Q 019862 247 MPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP--- 323 (334)
Q Consensus 247 L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~pDe~t~~YL~~r~~~~--- 323 (334)
|++||++|||||+||++|+.+|++|++|||+|+|+++||+++|||||||++|+|||+||||+|++|++||+.+++.+
T Consensus 144 l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~~ 223 (412)
T cd01584 144 LSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYLKATGRAEIAD 223 (412)
T ss_pred cCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHHHhcCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987754
Q ss_pred ----C--ccccCCCCCC
Q 019862 324 ----Y--EPVYSDEKAR 334 (334)
Q Consensus 324 ----~--~~~~sD~dA~ 334 (334)
| +.+++|+||+
T Consensus 224 ~~~~y~~~~l~~D~da~ 240 (412)
T cd01584 224 LADEFKDDLLVADEGAE 240 (412)
T ss_pred HHHHHHhcccCCCCCCC
Confidence 5 8899999984
No 19
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=1.3e-69 Score=569.85 Aligned_cols=247 Identities=21% Similarity=0.247 Sum_probs=232.4
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEE
Q 019862 51 APQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVI 130 (334)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~mTl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~ 130 (334)
.|..-++.|..+...+|||||+||||++|+|++.|+||++|++++|.+++||.|+|++++.|++ +|. ++|+|+++++
T Consensus 353 ~~~~~f~~~~~~~~~~~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~~-lg~--~~~~~d~v~~ 429 (835)
T PRK09238 353 PPSDVFRKPKQPADSGKGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRDELKD-LAC--LGFSADLVMQ 429 (835)
T ss_pred CchhhcCCCCCCCcCCCcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHHHHHH-cCC--cccCCCcEEE
Confidence 5666789999999999999999999999999988999999999999999999999999999964 874 8999999999
Q ss_pred EecCCCCCCcHHHHHHHHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcc
Q 019862 131 IPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAF 210 (334)
Q Consensus 131 ~~DH~vp~~~~~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAl 210 (334)
++||++|.++++++++|+.+|+|++++|+. ||+ ||+|||||++. ++++||++++|+||||||+||
T Consensus 430 ~~dH~~p~~~~~~a~~~~~lr~Fa~~~Gi~-~~~-----------pG~GI~H~vl~--~~~~Pg~vivG~DSHT~t~ga- 494 (835)
T PRK09238 430 SFCHTAAYPKPVDVKTHHTLPDFIMNRGGV-SLR-----------PGDGVIHSWLN--RMLLPDTVGTGGDSHTRFPIG- 494 (835)
T ss_pred EccCCCCCCCHHHHHHHHHHHHHHHHcCCc-EeC-----------CCCCeeeeccc--ccccCCeEEEecccccCCCCc-
Confidence 999999999999999999999999999996 465 45899999985 799999999999999999998
Q ss_pred cceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHH----HHH--------hcccCccceEEEEec
Q 019862 211 GQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQI----IGE--------ISVAGATYKSMEFVG 278 (334)
Q Consensus 211 Ga~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~i----i~~--------lg~~G~~gk~vEF~G 278 (334)
||||+|++|++++|+||++||+|||+|+|+|+|+|++||++|||||+| |++ +|.+|++|++|||.
T Consensus 495 --~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~lEf~- 571 (835)
T PRK09238 495 --ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIE- 571 (835)
T ss_pred --eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeEEEEc-
Confidence 799999999999999999999999999999999999999999999999 774 77788999999996
Q ss_pred ccccCCCHHhHHhhhhhhhhcCceEeeec-CChhHHHHhhhc
Q 019862 279 TTVERLSMEERMTLCNMVVEAGGKNGVVP-ADGTTFKYLEDK 319 (334)
Q Consensus 279 ~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~-pDe~t~~YL~~r 319 (334)
|+++||+++|||||||++|+||++|+|| +|++|++||+.+
T Consensus 572 -Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~ 612 (835)
T PRK09238 572 -GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSN 612 (835)
T ss_pred -CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhc
Confidence 5999999999999999999999999999 789999999976
No 20
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=6.1e-70 Score=532.80 Aligned_cols=203 Identities=29% Similarity=0.517 Sum_probs=193.1
Q ss_pred EEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCcceeeeccccCCcccCCCC
Q 019862 98 LMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDY 177 (334)
Q Consensus 98 v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~ 177 (334)
+|+||.|+|++++ |. ++| ..+||||+|+++++||++|+.+.+++++++++|+|||++||+ ||+. +
T Consensus 2 ~~~hd~t~p~~~~-~~-~~g-~~~v~~p~~~~~~~DH~vp~~~~~~~~~~~~lr~~ak~~gi~-~~~~-----------g 66 (363)
T cd01582 2 CMTHDNSWPVALK-FM-SIG-ATKIHNPDQIVMTLDHDVQNKSEKNLKKYKNIESFAKKHGID-FYPA-----------G 66 (363)
T ss_pred eeEEeCcHHHHHH-HH-HcC-CCccCCCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhCCe-EECC-----------C
Confidence 6899999999999 64 477 479999999999999999999999999999999999999995 6764 5
Q ss_pred CeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHH
Q 019862 178 KGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLI 257 (334)
Q Consensus 178 ~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDli 257 (334)
+|||||+++|+|+++||++|+|+||||||+||||+||||||+||++.+|+||++|++|||+|+|+|+|+|++||++||||
T Consensus 67 ~GI~Hqv~~E~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vPe~i~v~l~G~l~~gV~aKDvi 146 (363)
T cd01582 67 RGIGHQIMIEEGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVI 146 (363)
T ss_pred CCEEEEeccccCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCCCEEEEEEecccCCCCCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeeecCChhHHHH
Q 019862 258 LQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKY 315 (334)
Q Consensus 258 L~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~pDe~t~~Y 315 (334)
|+|+++|+.+|++|++|||+||++++||+++|||||||++|+||++||||+|++++++
T Consensus 147 L~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D~~~~~i 204 (363)
T cd01582 147 VALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTDAKHLIL 204 (363)
T ss_pred HHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999655543
No 21
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=1.2e-68 Score=561.47 Aligned_cols=247 Identities=21% Similarity=0.264 Sum_probs=228.6
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEE
Q 019862 51 APQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVI 130 (334)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~mTl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~ 130 (334)
.|..-++.|..+.+.+|||||+||||++|+|++.|+||++|++++|.+++||.|+|++++.|++ +|. ++|||+++++
T Consensus 354 ~~~~~f~~~~~~~~~~mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~~-l~~--~vfdpd~v~~ 430 (844)
T TIGR00117 354 PHSDVFRQPKAPAESDKGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDELKE-LAC--LGFSADLVLQ 430 (844)
T ss_pred ChhhhccCCCCCCcCCCchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHHHH-hCC--ceECCCcEEE
Confidence 4455788888888889999999999999999988999999999999999999999999999965 763 8999999999
Q ss_pred EecCCCCCCcHHHHHHHHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcc
Q 019862 131 IPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAF 210 (334)
Q Consensus 131 ~~DH~vp~~~~~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAl 210 (334)
++||++|.+++..+++|+.+|+|++++|+. ||+. ++|||||+++| +++||++++|+||||||+ +
T Consensus 431 ~~DH~~p~~~~~~a~~~~~lr~Fa~~~Gi~-~~~p-----------G~GI~Hqvl~e--~~~PG~vivG~DSHT~t~--~ 494 (844)
T TIGR00117 431 SFCHTAAYPKPVDVNTHHTLPDFIMNRGGV-ALRP-----------GDGVIHSWLNR--MLLPDTVGTGGDSHTRFP--L 494 (844)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHHHcCCe-EECC-----------CCceecccchh--hccCCeeEEecccccccc--c
Confidence 999999999999999999999999999996 6764 57999999876 689999999999999998 5
Q ss_pred cceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHH----H--HHhcc------cCccceEEEEec
Q 019862 211 GQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQI----I--GEISV------AGATYKSMEFVG 278 (334)
Q Consensus 211 Ga~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~i----i--~~lg~------~G~~gk~vEF~G 278 (334)
| ||||+|++|++.+|+||++||+|||+|+|+|+|+|++||++|||||+| | +.+++ +|++|++|||.
T Consensus 495 G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~lEf~- 572 (844)
T TIGR00117 495 G-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRILEIE- 572 (844)
T ss_pred e-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEEEEC-
Confidence 6 999999999999999999999999999999999999999999999999 5 45544 67899999996
Q ss_pred ccccCCCHHhHHhhhhhhhhcCceEeeecCCh-hHHHHhhhc
Q 019862 279 TTVERLSMEERMTLCNMVVEAGGKNGVVPADG-TTFKYLEDK 319 (334)
Q Consensus 279 ~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~pDe-~t~~YL~~r 319 (334)
|+++||+++|||||||++|+||++|+|++|+ +|++||+.+
T Consensus 573 -Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~ 613 (844)
T TIGR00117 573 -GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSN 613 (844)
T ss_pred -CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhC
Confidence 5999999999999999999999999999996 589999985
No 22
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=6.6e-66 Score=540.83 Aligned_cols=247 Identities=19% Similarity=0.210 Sum_probs=224.7
Q ss_pred eCCCCCCCCCCCCCCCCCCCcHHHHHHHHhcCC-CCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccE
Q 019862 50 MAPQQSERRPATTGSVKNAMTLTEKIFSRASEK-PQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 128 (334)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~mTl~EKIla~h~~~-~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv 128 (334)
..|..-++.|..+...+|||||+||||++|+|+ +.|+||++|++++|.+++||.|+|++++.|++ +|. .+|||+++
T Consensus 425 ~~~~~~f~~p~~~~~~~mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~efke-l~~--~~~dpdkv 501 (938)
T PLN00094 425 LDASDVFRMPSVPESKPKGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDELKD-LAC--LGFSADLV 501 (938)
T ss_pred CCchhhccCCCCCCcCCCchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHHHHH-hcc--cccCcccE
Confidence 345567899999999999999999999999998 46999999999999999999999999999964 763 48899999
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccC
Q 019862 129 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAG 208 (334)
Q Consensus 129 ~~~~DH~vp~~~~~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~G 208 (334)
++++||++|.+++...++|+.+|+|++++|+. ||+. ++|||||+++| +++||++++|+|||||+.+
T Consensus 502 ~~~fDH~ap~p~~~~~~~~~~lr~Fa~~~Gi~-~~~~-----------G~GI~HqvL~e--~~lPG~vivGgDSHT~fa~ 567 (938)
T PLN00094 502 MQSFCHTAAYPKPVDVVTHHTLPDFIRNRGGV-SLRP-----------GDGVIHSWLNR--MLLPDTVGTGGDSHTRFPI 567 (938)
T ss_pred EEEccCCCCCCCHHHHHHHHHHHHHHHHcCCE-EECC-----------CCceecccccc--cccCCeEEEeecCCCCCcc
Confidence 99999999999999999999999999999996 7774 47999999865 9999999999999999776
Q ss_pred cccceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHH------HHhc------ccCccceEEEE
Q 019862 209 AFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQII------GEIS------VAGATYKSMEF 276 (334)
Q Consensus 209 AlGa~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii------~~lg------~~G~~gk~vEF 276 (334)
++ +||.|++|+|++|+||++||+|||+|+|+|+|+|++||++|||||+|+ +.|+ .++++|++|||
T Consensus 568 GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~GkilEf 644 (938)
T PLN00094 568 GI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGRILEI 644 (938)
T ss_pred cc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeEEEEe
Confidence 64 667799999999999999999999999999999999999999999996 4444 44568999999
Q ss_pred ecccccCCCHHhHHhhhhhhhhcCceEeeecCCh-hHHHHhhh
Q 019862 277 VGTTVERLSMEERMTLCNMVVEAGGKNGVVPADG-TTFKYLED 318 (334)
Q Consensus 277 ~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~pDe-~t~~YL~~ 318 (334)
+|+++||+++|||||||++|+||++|+|++|+ +|++||+.
T Consensus 645 --~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~ 685 (938)
T PLN00094 645 --EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNS 685 (938)
T ss_pred --CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhh
Confidence 56999999999999999999999999999995 78999986
No 23
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=1.6e-65 Score=507.68 Aligned_cols=223 Identities=33% Similarity=0.545 Sum_probs=212.6
Q ss_pred EEEecCCChHHHHHHHHHHhCCCC-cccCCccEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCcceeeeccccCCcccCC
Q 019862 97 ILMTHDVCGPGSFGIFKKEFGENA-KVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANP 175 (334)
Q Consensus 97 ~v~~hD~t~p~~i~~~~~~~G~~~-~V~dP~kv~~~~DH~vp~~~~~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~p 175 (334)
++|+||.|+|++++.|++ +|. . +||||+|+++++||++|+++.+++++++++|+|++++||+ ||+.
T Consensus 1 ~v~~hD~tgp~a~~~~~~-~~~-~~~v~~p~~v~~~~DH~~p~~~~~~~~~~~~lr~f~~~~gi~-~~~~---------- 67 (389)
T cd01351 1 RVMLQDATGPMAMKAFEI-LAA-LGKVADPSQIACVHDHAVQLEKPVNNEGHKFLSFFAALQGIA-FYRP---------- 67 (389)
T ss_pred CEEEEecchHHHHHHHHH-cCC-CCCCCCcccEEEEECCCCCCCChhHHHHHHHHHHHHHHcCCc-EECC----------
Confidence 478999999999999964 774 5 8999999999999999999999999999999999999995 6764
Q ss_pred CCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHH
Q 019862 176 DYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKD 255 (334)
Q Consensus 176 p~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKD 255 (334)
++|||||+++|+ +++||++++|+||||||+||||+||||+|+||++++|+||++|+++|++++|+|+|+|+++|++||
T Consensus 68 -g~Gi~H~~~~E~-~~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP~~~~v~l~G~l~~~V~~kD 145 (389)
T cd01351 68 -GVGIIHQIMVEN-LALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKD 145 (389)
T ss_pred -CCCeECcccccc-cCCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCCcEEEEEEecccCCCceeeH
Confidence 589999999887 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeeecCChhHHHHhhhcCCC--------CCccc
Q 019862 256 LILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSL--------PYEPV 327 (334)
Q Consensus 256 liL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~pDe~t~~YL~~r~~~--------~~~~~ 327 (334)
++|+|++.+|.+|++|+++||.|+++++||+|+|+|||||++|+||++|+||+|++|++||+.|++. +|+.+
T Consensus 146 l~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl~~~~~~~~~~~~~~~~~~l 225 (389)
T cd01351 146 VVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWLEATGRPLLKNLWLAFPEEL 225 (389)
T ss_pred HHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHHHhcCCchhhHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999998876 68889
Q ss_pred cCCCCCC
Q 019862 328 YSDEKAR 334 (334)
Q Consensus 328 ~sD~dA~ 334 (334)
.+|+||.
T Consensus 226 ~~d~~a~ 232 (389)
T cd01351 226 LADEGAE 232 (389)
T ss_pred CCCCCCC
Confidence 9999984
No 24
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=1.2e-64 Score=535.55 Aligned_cols=237 Identities=22% Similarity=0.336 Sum_probs=208.4
Q ss_pred CCCCCeEEEeeeEEEecCCChHHHHHHHHH------HhCCCCcccCCc-cEEEEecCCCCCCcH-----HHHHHHHHHHH
Q 019862 85 LSPGDNVWVNVDILMTHDVCGPGSFGIFKK------EFGENAKVWDRE-KIVIIPDHYIFTSDE-----RANRNVDILRD 152 (334)
Q Consensus 85 v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~------~~G~~~~V~dP~-kv~~~~DH~vp~~~~-----~~a~~~~~lr~ 152 (334)
-++|..|-++||++++||+|+.+++-.|.. ++|.+++.++|. ++.+++||++++... ...+..+.+++
T Consensus 74 ~~~~~ei~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~r 153 (888)
T PRK09277 74 AKPDREIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFER 153 (888)
T ss_pred CCCCceeeeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHh
Confidence 357889999999999999999666555533 247677788998 799999999987642 22233344444
Q ss_pred HHHHcCcceeeeccccCCcccCCCCCeeeeeeecc----------ee--eeeCCceEEeCCCCCcccCcccceeecCchh
Q 019862 153 FCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ----------EG--HCRPGEVLLGTDSHTCTAGAFGQFATGIGNT 220 (334)
Q Consensus 153 fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~E----------eg--~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~t 220 (334)
.++++++-. |....+.||+++||++|||||+.+| .| ++.| ++||||||||||+||||+||||||++
T Consensus 154 N~er~~fLk-w~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~P-dtlVGtDSHT~t~GalG~la~GVGg~ 231 (888)
T PRK09277 154 NEERYQFLK-WGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYP-DTLVGTDSHTTMINGLGVLGWGVGGI 231 (888)
T ss_pred CHHHHhHHH-HHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeecc-ceEEecCCCCCCCCcccccEEccCHH
Confidence 555544322 7777889999999999999999999 77 9999 69999999999999999999999999
Q ss_pred HHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcC
Q 019862 221 DAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAG 300 (334)
Q Consensus 221 d~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~G 300 (334)
|++++|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++|++|||+|||+++||+++|||||||++|+|
T Consensus 232 Eaeaam~g~~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~G 311 (888)
T PRK09277 232 EAEAAMLGQPSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYG 311 (888)
T ss_pred HHHHHHhcCcEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeecCChhHHHHhhhcCCCC
Q 019862 301 GKNGVVPADGTTFKYLEDKTSLP 323 (334)
Q Consensus 301 Ak~gi~~pDe~t~~YL~~r~~~~ 323 (334)
|++||||+|++|++||+.+++.+
T Consensus 312 At~g~fp~De~T~~YL~~tgr~~ 334 (888)
T PRK09277 312 ATCGFFPIDEETLDYLRLTGRDE 334 (888)
T ss_pred ceEEEecCChhHHHHHHhcCCCh
Confidence 99999999999999999987754
No 25
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=1.5e-64 Score=535.20 Aligned_cols=237 Identities=22% Similarity=0.311 Sum_probs=209.5
Q ss_pred CCCCCCeEEEeeeEEEecCCChHHHHHHHH------HHhCCCCcccCCc-cEEEEecCCCCCCc-----HHHHHHHHHHH
Q 019862 84 QLSPGDNVWVNVDILMTHDVCGPGSFGIFK------KEFGENAKVWDRE-KIVIIPDHYIFTSD-----ERANRNVDILR 151 (334)
Q Consensus 84 ~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~------~~~G~~~~V~dP~-kv~~~~DH~vp~~~-----~~~a~~~~~lr 151 (334)
...+|..|.++||++++||+|+.+++-.|. .+.|.++...+|. ++.+++||++++.. ....+..+.++
T Consensus 79 ~~~~~~ei~~~p~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~ 158 (898)
T PTZ00092 79 NSKKQIEIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFE 158 (898)
T ss_pred cCCCCceeeeccceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 345789999999999999999944433321 2357777777996 99999999998763 22333345566
Q ss_pred HHHHHcCcceeeeccccCCcccCCCCCeeeeeeecc---------eeeeeCCceEEeCCCCCcccCcccceeecCchhHH
Q 019862 152 DFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ---------EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDA 222 (334)
Q Consensus 152 ~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~E---------eg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~ 222 (334)
+.+++|++. .|..+.+.||+++||++|||||++.| +|++.| +++|||||||||+||||+||||||++|+
T Consensus 159 rN~ery~fl-~~~~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~P-d~lvGtDSHT~~~GalG~la~GVGg~Ea 236 (898)
T PTZ00092 159 RNLERFEFL-KWGSKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYP-DSVVGTDSHTTMINGLGVLGWGVGGIEA 236 (898)
T ss_pred hhHHHhChH-HhhhhhhcCCcccCCCCceeceechhhhccccccccCcccC-CeEEecCCCCCCCCcccccEecccHHHH
Confidence 677777764 38888899999999999999999877 899999 5599999999999999999999999999
Q ss_pred HHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCce
Q 019862 223 GFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 302 (334)
Q Consensus 223 a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk 302 (334)
+++|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++|++|||+|||+++||+++|||||||++|+||+
T Consensus 237 eaamlgq~~~~~vPevvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt 316 (898)
T PTZ00092 237 EAVMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGAT 316 (898)
T ss_pred HHHHhcCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCChhHHHHhhhcCCC
Q 019862 303 NGVVPADGTTFKYLEDKTSL 322 (334)
Q Consensus 303 ~gi~~pDe~t~~YL~~r~~~ 322 (334)
+||||+|++|++||+.+++.
T Consensus 317 ~gifp~De~T~~YL~~tgR~ 336 (898)
T PTZ00092 317 MGFFPIDEKTLDYLKQTGRS 336 (898)
T ss_pred EEEecCChhHHHHHHhcccc
Confidence 99999999999999997764
No 26
>PLN00070 aconitate hydratase
Probab=100.00 E-value=1.3e-64 Score=536.75 Aligned_cols=236 Identities=22% Similarity=0.315 Sum_probs=210.2
Q ss_pred CCCCeEEEeeeEEEecCCCh-HHHHHH--H---HHHhCCCCcccCCc-cEEEEecCCCCCCc----HHHHHH-HHHHHHH
Q 019862 86 SPGDNVWVNVDILMTHDVCG-PGSFGI--F---KKEFGENAKVWDRE-KIVIIPDHYIFTSD----ERANRN-VDILRDF 153 (334)
Q Consensus 86 ~~Gd~v~v~vD~v~~hD~t~-p~~i~~--~---~~~~G~~~~V~dP~-kv~~~~DH~vp~~~----~~~a~~-~~~lr~f 153 (334)
..+..|.++|++|++||+|+ |.++++ | .+++|.+++..||. ++.+++||++.... ....+| ...+++.
T Consensus 113 ~~~~ei~f~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN 192 (936)
T PLN00070 113 PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRN 192 (936)
T ss_pred CCCceeccCCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHh
Confidence 34668889999999999999 665555 2 23467788888997 99999999996543 223333 4556667
Q ss_pred HHHcCcceeeeccccCCcccCCCCCeeeeeeecc---------eeeeeCCceEEeCCCCCcccCcccceeecCchhHHHH
Q 019862 154 CMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ---------EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGF 224 (334)
Q Consensus 154 a~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~E---------eg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~ 224 (334)
++++++. .|+.+.+.||+++||++|||||+.+| +|++.|| ++|||||||||+||||+||||||++|+++
T Consensus 193 ~Ery~fl-kw~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~Pd-tlVGtDSHT~~~GglG~lg~GVGg~Eaea 270 (936)
T PLN00070 193 KERFAFL-KWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEA 270 (936)
T ss_pred HHHhChh-hhhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCC-eEEeCCcccCCCCcccccEecccHHHHHH
Confidence 7777764 38998899999999999999999999 8999995 59999999999999999999999999999
Q ss_pred HHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEe
Q 019862 225 VLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNG 304 (334)
Q Consensus 225 ~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~g 304 (334)
+|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++|++|||+|||+++||+++|||||||++|+||++|
T Consensus 271 aMlgqp~~~~vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g 350 (936)
T PLN00070 271 AMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMG 350 (936)
T ss_pred HHhCCeEEeeCCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHhhhcCCCC
Q 019862 305 VVPADGTTFKYLEDKTSLP 323 (334)
Q Consensus 305 i~~pDe~t~~YL~~r~~~~ 323 (334)
|||+|++|++||+.+++.+
T Consensus 351 ~FP~De~T~~YL~~tgR~~ 369 (936)
T PLN00070 351 FFPVDHVTLQYLKLTGRSD 369 (936)
T ss_pred EecCChHHHHHHHhCCCCH
Confidence 9999999999999987654
No 27
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=2e-64 Score=534.56 Aligned_cols=236 Identities=22% Similarity=0.313 Sum_probs=206.6
Q ss_pred CCCCeEEEeeeEEEecCCChHHHHHHHH------HHhCCCCcccCCc-cEEEEecCCCCCCc-----HHHHHHHHHHHHH
Q 019862 86 SPGDNVWVNVDILMTHDVCGPGSFGIFK------KEFGENAKVWDRE-KIVIIPDHYIFTSD-----ERANRNVDILRDF 153 (334)
Q Consensus 86 ~~Gd~v~v~vD~v~~hD~t~p~~i~~~~------~~~G~~~~V~dP~-kv~~~~DH~vp~~~-----~~~a~~~~~lr~f 153 (334)
..+..|.++||++++||+|+++++..|. ++.|.+.+..||. ++.+++||++++.. ....+....+++.
T Consensus 74 ~~~~ei~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN 153 (889)
T PRK12881 74 KSDDEIPFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRN 153 (889)
T ss_pred CCCceeccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhh
Confidence 4567899999999999999988887772 2357655555665 57799999998763 2222334444555
Q ss_pred HHHcCcceeeeccccCCcccCCCCCeeeeeeecce-------------eeeeCCceEEeCCCCCcccCcccceeecCchh
Q 019862 154 CMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE-------------GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNT 220 (334)
Q Consensus 154 a~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Ee-------------g~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~t 220 (334)
+++|++-+ |.+..+.||+++||++|||||+.+|. |++.| +++|||||||||+||||+||||||++
T Consensus 154 ~ery~fLk-w~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~P-dtlVGtDSHT~~~galG~lg~GVGg~ 231 (889)
T PRK12881 154 AERYQFLK-WGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYP-DTLVGTDSHTTMINGIGVLGWGVGGI 231 (889)
T ss_pred HHHhChHH-HHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecC-CeEEecCCCCCCCccccceEecccHH
Confidence 55555422 77888899999999999999999996 89999 69999999999999999999999999
Q ss_pred HHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcC
Q 019862 221 DAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAG 300 (334)
Q Consensus 221 d~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~G 300 (334)
|++++|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++|++|||+||||++||+++|||||||++|+|
T Consensus 232 Eaeaamlgq~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~G 311 (889)
T PRK12881 232 EAEAVMLGQPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYG 311 (889)
T ss_pred HHHHHHhCCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeecCChhHHHHhhhcCCCC
Q 019862 301 GKNGVVPADGTTFKYLEDKTSLP 323 (334)
Q Consensus 301 Ak~gi~~pDe~t~~YL~~r~~~~ 323 (334)
|++||||+|++|++||+.+++.+
T Consensus 312 At~g~fp~De~T~~YL~~tgr~~ 334 (889)
T PRK12881 312 ATMGFFPVDEQTLDYLRLTGRTE 334 (889)
T ss_pred ceEEEecCChhHHHHHHhcccch
Confidence 99999999999999999987643
No 28
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=6.2e-64 Score=529.56 Aligned_cols=237 Identities=22% Similarity=0.290 Sum_probs=206.0
Q ss_pred CCCCCeEEEeeeEEEecCCChHHHHHHHHH------HhCCCCcccCCc-cEEEEecCCCCCCc-----HHHHHHHHHHHH
Q 019862 85 LSPGDNVWVNVDILMTHDVCGPGSFGIFKK------EFGENAKVWDRE-KIVIIPDHYIFTSD-----ERANRNVDILRD 152 (334)
Q Consensus 85 v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~------~~G~~~~V~dP~-kv~~~~DH~vp~~~-----~~~a~~~~~lr~ 152 (334)
...+..|.++||++++||+|+.+++-.|.. +.|.++...+|. ++.+++||++++.. ....+..+.+++
T Consensus 56 ~~~~~ei~f~p~RvllQD~TGvpa~vdlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~r 135 (876)
T TIGR01341 56 EVADTEIAFKPARVVMQDFTGVPAVVDLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFER 135 (876)
T ss_pred CCCCceeccCchhheeccccCchHHHHHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHh
Confidence 345778999999999999999554444422 258777788996 89999999998763 222233344444
Q ss_pred HHHHcCcceeeeccccCCcccCCCCCeeeeeeecce-------------eeeeCCceEEeCCCCCcccCcccceeecCch
Q 019862 153 FCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE-------------GHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 219 (334)
Q Consensus 153 fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Ee-------------g~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~ 219 (334)
.+++|++-. |.+..++||+++||++|||||+.+|. |++.| +++|||||||||+||||+||||||+
T Consensus 136 N~ery~fLk-w~~~~f~~~~v~ppg~GI~HqV~lE~la~~v~~~~~~g~g~a~P-dtlVGtDSHT~t~GalG~la~GVGg 213 (876)
T TIGR01341 136 NLERYQFLK-WAQKAFRNFRVVPPGTGIIHQVNLEYLATVVFKAEVDGELTAYP-DSLVGTDSHTTMINGLGVLGWGVGG 213 (876)
T ss_pred CHHHHhHHH-HHHHHcccCCCCCCCCCeeceechhhcccceeecccCCcceecc-ceeeecCCCCCCCCeecceEecccH
Confidence 444444321 77778899999999999999999996 79999 5899999999999999999999999
Q ss_pred hHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhc
Q 019862 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEA 299 (334)
Q Consensus 220 td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~ 299 (334)
+|++++|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++|++|||+|||+++||+++|||||||++|+
T Consensus 214 ~Eaeavmlgq~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~ 293 (876)
T TIGR01341 214 IEAEAAMLGQPYYMNVPEVIGVKLTGKLQEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEY 293 (876)
T ss_pred HHHHHHHhCCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEeeecCChhHHHHhhhcCCCC
Q 019862 300 GGKNGVVPADGTTFKYLEDKTSLP 323 (334)
Q Consensus 300 GAk~gi~~pDe~t~~YL~~r~~~~ 323 (334)
||++||||+|++|++||+.+++.+
T Consensus 294 GAt~g~fp~De~T~~YL~~tgr~~ 317 (876)
T TIGR01341 294 GATCGFFPIDDVTLQYLRLTGRDG 317 (876)
T ss_pred CceEEEEcCChhHHHHHHhCCCCH
Confidence 999999999999999999988754
No 29
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=9.9e-64 Score=526.48 Aligned_cols=250 Identities=21% Similarity=0.285 Sum_probs=216.1
Q ss_pred CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHH-HHHHH-----HHHhCCCCcccCCc-cEEEEecCCCCCC
Q 019862 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPG-SFGIF-----KKEFGENAKVWDRE-KIVIIPDHYIFTS 139 (334)
Q Consensus 67 ~~mTl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~-~i~~~-----~~~~G~~~~V~dP~-kv~~~~DH~vp~~ 139 (334)
.+..+.|+|.+-... ..+..|-.+|++|++||+|+.. ++++. ..+.|.+++..||. ++.+++||++...
T Consensus 49 d~~~~~~~~~~~~~w----~~~~ei~f~P~RV~mqD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd 124 (858)
T TIGR02333 49 DPETLSASLLQIIER----KRDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVE 124 (858)
T ss_pred CChhhHHHHHHHHcC----CCCCeeccCcceeeeccccCcchhhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceec
Confidence 356666664333222 3467888999999999999944 44332 12467788889997 9999999999654
Q ss_pred cH-----HHHHHHHHHHHHHHHcCccee--eeccccCCcccCCCCCeeeeeeecce---------eeeeCCceEEeCCCC
Q 019862 140 DE-----RANRNVDILRDFCMEQNIKYF--YDIKDLGNFKANPDYKGVCHIALAQE---------GHCRPGEVLLGTDSH 203 (334)
Q Consensus 140 ~~-----~~a~~~~~lr~fa~~~gi~~f--~d~~~~~~~~v~pp~~GI~Hqvl~Ee---------g~~~PG~vvvGtDSH 203 (334)
.. ....|.+. ||.++..++.| |....+.||+++||++|||||++.|. |++.| +++||||||
T Consensus 125 ~~g~~~da~~~n~~~--e~~rN~Ery~FLkwa~~af~~~~~~ppG~GI~HQV~lE~la~vv~~~~G~a~P-d~ivGTDSH 201 (858)
T TIGR02333 125 YGGFDPDAFEKNRAI--EDRRNEDRFHFINWTKTAFKNVDVIPAGNGIMHQINLEKMSPVIQVKNGVAFP-DTCVGTDSH 201 (858)
T ss_pred cCCCCcchhHHHHHH--HHhhhHHHHHHHHHHHHHhCCcEEeCCCCCEeeeEchhhccccccccCCcccC-CeEEecCCC
Confidence 32 22334443 78888888777 66777899999999999999999995 89999 689999999
Q ss_pred CcccCcccceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccC
Q 019862 204 TCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVER 283 (334)
Q Consensus 204 T~t~GAlGa~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~ 283 (334)
|||+||||+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+|||+++
T Consensus 202 T~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~ 281 (858)
T TIGR02333 202 TPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQPGITATDIVLALTEFLRKERVVSAYLEFFGEGARA 281 (858)
T ss_pred CCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecCCCCCHhHHHHHHHHHHhhcCccceEEEEeCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHhHHhhhhhhhhcCceEeeecCChhHHHHhhhcCCCC
Q 019862 284 LSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP 323 (334)
Q Consensus 284 Ls~~eR~Tl~NMa~E~GAk~gi~~pDe~t~~YL~~r~~~~ 323 (334)
||+++|||||||++|+||++||||+|++|++||+.+++.+
T Consensus 282 LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~ 321 (858)
T TIGR02333 282 LTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREP 321 (858)
T ss_pred CCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCch
Confidence 9999999999999999999999999999999999877644
No 30
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=2.8e-63 Score=489.92 Aligned_cols=217 Identities=24% Similarity=0.367 Sum_probs=195.8
Q ss_pred EEEecCCCh-HHHHHHH-----HHHhCCCCcccCCc-cEEEEecCCCCCC-----cHHHHHHHHHHHHHHHHcCcceeee
Q 019862 97 ILMTHDVCG-PGSFGIF-----KKEFGENAKVWDRE-KIVIIPDHYIFTS-----DERANRNVDILRDFCMEQNIKYFYD 164 (334)
Q Consensus 97 ~v~~hD~t~-p~~i~~~-----~~~~G~~~~V~dP~-kv~~~~DH~vp~~-----~~~~a~~~~~lr~fa~~~gi~~f~d 164 (334)
++++||+|+ |.++++. ..+.|.+++..||. ++.+++||++++. +....++.+.+++.+++|++.+ |.
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~-~~ 79 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLK-WG 79 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHH-HH
Confidence 468899998 6555543 23478788889996 9999999999886 3444566788899999999864 77
Q ss_pred ccccCCcccCCCCCeeeeeeecc-------------eeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHHhcceE
Q 019862 165 IKDLGNFKANPDYKGVCHIALAQ-------------EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKV 231 (334)
Q Consensus 165 ~~~~~~~~v~pp~~GI~Hqvl~E-------------eg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tG~~ 231 (334)
...++|++++||++|||||++.| +|+++| ++|||+||||||+||||+||||||++|++++|++|++
T Consensus 80 ~~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P-~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~ 158 (404)
T cd01586 80 QKAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYP-DSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPI 158 (404)
T ss_pred HHHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEee-eeEeecCCCCccCCcccceEecccHHHHHHHHhCCcc
Confidence 77888999999999999999966 899999 5999999999999999999999999999999999999
Q ss_pred EeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeeecCChh
Q 019862 232 LLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGT 311 (334)
Q Consensus 232 wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~pDe~ 311 (334)
||++||+|+|+|+|+|++||++|||||+||++|+.+|++|++|||+||++++||+++|||||||++|+||++||||||++
T Consensus 159 ~~~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~Dd~ 238 (404)
T cd01586 159 SMLLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVDTQ 238 (404)
T ss_pred ccCCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred HHHH
Q 019862 312 TFKY 315 (334)
Q Consensus 312 t~~Y 315 (334)
++++
T Consensus 239 ~i~i 242 (404)
T cd01586 239 VVEL 242 (404)
T ss_pred EEEE
Confidence 5543
No 31
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=2.4e-58 Score=481.76 Aligned_cols=253 Identities=25% Similarity=0.398 Sum_probs=213.7
Q ss_pred CCCcHHHHHHHHhcCCC---------CC-------CCCCeEEEeeeEEEecCCChHH-HH------HHHHHHhCCCCccc
Q 019862 67 NAMTLTEKIFSRASEKP---------QL-------SPGDNVWVNVDILMTHDVCGPG-SF------GIFKKEFGENAKVW 123 (334)
Q Consensus 67 ~~mTl~EKIla~h~~~~---------~v-------~~Gd~v~v~vD~v~~hD~t~p~-~i------~~~~~~~G~~~~V~ 123 (334)
+..+..+|||.+|..+. .+ ++...+..++++|++||+|+.. ++ +.+. +.|.++...
T Consensus 31 ~~Lp~s~kiL~e~l~r~~d~~~~~i~~~~~w~~~~~~~~ei~~~p~RVvmQD~tgvpa~vdla~mr~a~~-~~g~dp~~i 109 (861)
T COG1048 31 SKLPYSLKILLENLLRGEDGTEEHIEALARWLPSGKPEKEIAFRPARVVMQDFTGVPAVVDLAAMRDAMV-ELGGDPAKI 109 (861)
T ss_pred ccCChhHHHHHHHhccccccchhHHHHHhccccccCcccccccccceeeeecccCCCeeEEhhhHHHHHH-HhcCChhhc
Confidence 35688899999997543 11 1235688899999999999832 22 2333 466555556
Q ss_pred CC-ccEEEEecCCCCCCc----HHHHHHHHHHHHHHHHcCccee--eeccccCCcccCCCCCeeeeeeeccee----eee
Q 019862 124 DR-EKIVIIPDHYIFTSD----ERANRNVDILRDFCMEQNIKYF--YDIKDLGNFKANPDYKGVCHIALAQEG----HCR 192 (334)
Q Consensus 124 dP-~kv~~~~DH~vp~~~----~~~a~~~~~lr~fa~~~gi~~f--~d~~~~~~~~v~pp~~GI~Hqvl~Eeg----~~~ 192 (334)
|| -++.+++||++.... ...+.|.+. +|.|+...+.| |....+.||+++|||.|||||+..|.. ++.
T Consensus 110 nP~~pvdLviDHsv~vd~~g~~~a~~~n~~~--e~~rN~ery~FL~w~~kaf~n~~vvPPGtGIiHQVnLE~la~vv~~~ 187 (861)
T COG1048 110 NPVVPVDLVIDHSVQVDVGGDPDAFEKNVEL--EFERNGERYKFLKWAAKAFYNFRVVPPGTGIIHQVNLEYLAKVVWAK 187 (861)
T ss_pred CCCCcceeeecceeeeecCCChhhhhhhhhh--HhhhhhHHHHHHHHHHHhcCCcEEECCCCceeeeehHhhhccceecc
Confidence 66 499999999996443 222333333 67777776666 556667899999999999999987752 445
Q ss_pred CC----ceEEeCCCCCcccCcccceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccC
Q 019862 193 PG----EVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAG 268 (334)
Q Consensus 193 PG----~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G 268 (334)
|| |++|||||||+|+|+||+||||||+.|++++|+++++||++|++|+|+|+|+||+||+||||||+|++.|+.+|
T Consensus 188 ~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGVkLtGkl~~gvTatDlvL~vt~~Lr~~g 267 (861)
T COG1048 188 PGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGVKLTGKLPEGVTATDLVLTVTGMLRKKG 267 (861)
T ss_pred CcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEEEEeccCCCCCCHHHHHHHHHHHHHhcC
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeeecCChhHHHHhhhcCCC
Q 019862 269 ATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSL 322 (334)
Q Consensus 269 ~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~pDe~t~~YL~~r~~~ 322 (334)
.+||+|||+|||+++||+++|+|||||++|+||++|+||.|++|++||+.++|.
T Consensus 268 vVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR~ 321 (861)
T COG1048 268 VVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGRS 321 (861)
T ss_pred ccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999999999998874
No 32
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=4e-55 Score=442.37 Aligned_cols=257 Identities=28% Similarity=0.410 Sum_probs=224.3
Q ss_pred CCCCCCC-CCcHHHHHHHHhcCCC----CCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCC
Q 019862 61 TTGSVKN-AMTLTEKIFSRASEKP----QLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHY 135 (334)
Q Consensus 61 ~~~~~~~-~mTl~EKIla~h~~~~----~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~ 135 (334)
...+..+ ++|++||||..|.... .++.++++.++||+|++||.|..+++-.|.. .| ..+|.+|..| .+||.
T Consensus 50 v~k~l~~~p~tl~EKIlyshl~~p~~~~i~Rg~~Yl~lrPdrva~qDasaqma~LqFms-~G-l~kvavPstI--hCdhl 125 (778)
T KOG0453|consen 50 VKKRLNKPPLTLTEKILYSHLDNPPEQKIVRGGSYLKLRPDRVAMQDASAQMALLQFMS-SG-LKKVAVPSTI--HCDHL 125 (778)
T ss_pred HHHHhcCCCchhhHHHHHhhccCCcccceecccceEEEcccceecccchhhHHHHHHHh-cC-cccccCCceE--Eecce
Confidence 3445555 6999999999998643 4677899999999999999996555544432 67 4899999765 67875
Q ss_pred CC----------CCcHHHHHHHHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCc
Q 019862 136 IF----------TSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTC 205 (334)
Q Consensus 136 vp----------~~~~~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~ 205 (334)
+. .....+.+.+++|..||++|||. || |||.||+||++.|+ |+.||-++|||||||+
T Consensus 126 i~a~~gg~~Dl~~a~~~Nkevydfl~saakkygi~-Fw-----------~pGsGIiHQIvlEn-YAfPG~m~igTDSHTp 192 (778)
T KOG0453|consen 126 IEAQVGGDKDLQRASDLNKEVYDFLESAAKKYGIG-FW-----------KPGSGIIHQIVLEN-YAFPGLMMIGTDSHTP 192 (778)
T ss_pred eeeccCCcchhhhhhhhhHHHHHHHHHHHHhcCCC-cc-----------CCCCceeeeeeeec-ccCCcceEEeccCCCC
Confidence 53 33455677789999999999996 67 57789999999887 9999999999999999
Q ss_pred ccCcccceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCC
Q 019862 206 TAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLS 285 (334)
Q Consensus 206 t~GAlGa~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls 285 (334)
++|+||+|++|||++|++.+|++.++.++.|++++|+|+|+|+.|+++|||||++.+.|..+|++|++|||+||||++||
T Consensus 193 n~GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~slS 272 (778)
T KOG0453|consen 193 NAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLS 272 (778)
T ss_pred CCCccceeeeccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccceec
Confidence 99999999999999999999999555599999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHhhhhhhhhcCceEeeecCChhHHHHhhhcCCCC--------Cc-cccCCCCCC
Q 019862 286 MEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP--------YE-PVYSDEKAR 334 (334)
Q Consensus 286 ~~eR~Tl~NMa~E~GAk~gi~~pDe~t~~YL~~r~~~~--------~~-~~~sD~dA~ 334 (334)
++.|.|||||.+|.||++++||.|+.+.+||+..++.+ .. .+.+|+||.
T Consensus 273 ctgm~TIcNMgaEiGAtTs~FP~n~~m~~yL~atgr~~ia~~a~~~~~~~l~AD~~a~ 330 (778)
T KOG0453|consen 273 CTGMATICNMGAEIGATTSLFPYNERMIDYLQATGRNEIAREARETLDAILAADKGAH 330 (778)
T ss_pred cccceeeccccccccccccccCCCHHHHHHHHHhCcccchhhhHHhhhhcccCCCCCC
Confidence 99999999999999999999999999999999876642 22 488999884
No 33
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-47 Score=381.07 Aligned_cols=248 Identities=23% Similarity=0.386 Sum_probs=209.1
Q ss_pred cHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCCh-HHHHHHH-----HHHhCCCCcccCCc-cEEEEecCCCCCCcHH
Q 019862 70 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCG-PGSFGIF-----KKEFGENAKVWDRE-KIVIIPDHYIFTSDER 142 (334)
Q Consensus 70 Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~-p~~i~~~-----~~~~G~~~~V~dP~-kv~~~~DH~vp~~~~~ 142 (334)
-=+||||....... ..-.|-.++-+|++||+|| |.++++. .+++|.++...||- ++.+++||++...-.+
T Consensus 61 ~DVe~IldW~~t~~---k~vEvpFkPARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r 137 (892)
T KOG0452|consen 61 KDVENILDWKNTQK---KQVEVPFKPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFAR 137 (892)
T ss_pred HHHHHHhCccccCc---cceeeccccceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeecc
Confidence 34788887653221 1225677899999999999 5544432 23477778888995 9999999999665433
Q ss_pred H----HHHHHHHHHHHHHcCccee--eeccccCCcccCCCCCeeeeee---------ecceeeeeCCceEEeCCCCCccc
Q 019862 143 A----NRNVDILRDFCMEQNIKYF--YDIKDLGNFKANPDYKGVCHIA---------LAQEGHCRPGEVLLGTDSHTCTA 207 (334)
Q Consensus 143 ~----a~~~~~lr~fa~~~gi~~f--~d~~~~~~~~v~pp~~GI~Hqv---------l~Eeg~~~PG~vvvGtDSHT~t~ 207 (334)
+ ++|+.. ||.|+.....| |....+.|+.|+|||.||+||+ +.+..+..| |.||||||||+|.
T Consensus 138 ~~~alqkN~~l--EF~RNkERf~FlKWgs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyP-DSvVGTDSHtTMi 214 (892)
T KOG0452|consen 138 SADALQKNQEL--EFERNKERFTFLKWGSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYP-DSVVGTDSHTTMI 214 (892)
T ss_pred CHHHHhhccee--eeecchhhhhhhhhhhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecc-cccccccCcceee
Confidence 3 333333 67777666556 4455689999999999999995 334567888 9999999999999
Q ss_pred CcccceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHH
Q 019862 208 GAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSME 287 (334)
Q Consensus 208 GAlGa~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~ 287 (334)
.+||.+|||||+.|++++|+++++.|-+|++|+++|+|+|.++|++.||+|.|.+.|+.-|..||+|||+|+|+.+||+.
T Consensus 215 dGlGvlGWGVGGIEaEAvMLGqpiSmvlP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSia 294 (892)
T KOG0452|consen 215 DGLGVLGWGVGGIEAEAVMLGQPISMVLPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIA 294 (892)
T ss_pred cccceeeccccceehhhhhhcCchheecccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhhhhcCceEeeecCChhHHHHhhhcCCCC
Q 019862 288 ERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLP 323 (334)
Q Consensus 288 eR~Tl~NMa~E~GAk~gi~~pDe~t~~YL~~r~~~~ 323 (334)
+|+||+||++|+||+.|+||.|+.|++||+..++.+
T Consensus 295 DRaTIaNMcPEYGAt~gfFPvD~vtl~yl~~Tgrs~ 330 (892)
T KOG0452|consen 295 DRATIANMCPEYGATMGFFPVDEVTLQYLKQTGRSE 330 (892)
T ss_pred hhhhhhhcCccccceeeeeccchhHHHHHHHcCCcH
Confidence 999999999999999999999999999999887643
No 34
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-41 Score=333.08 Aligned_cols=329 Identities=31% Similarity=0.308 Sum_probs=299.7
Q ss_pred CCCcCCCCCCCCcccccccccCcccccCCcccccchhhcccccceEEEeeCCCCCCCCCCCCCCCCCCCcHHHHHHHHhc
Q 019862 1 MASSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFSRAS 80 (334)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mTl~EKIla~h~ 80 (334)
|++....+|..+.+.+ +-++....++..|+-+-..|.+.++..++.++++||++ |+|..+|+++.|||++|||+++.+
T Consensus 1 y~k~rplaPkg~~we~-avaywktl~~de~ak~dhe~~i~aidv~pt~twgtspq-d~~pitGsvpdp~~vtd~i~a~~~ 78 (502)
T KOG0454|consen 1 YAKVRPLAPKGCKWES-AVAYWKTLFPDESAKSDHECQIKAIDVKPTSTWGTSPQ-DSPPITGSVPDPMTVTDKILARAS 78 (502)
T ss_pred CCCcccCCccccchhh-hhhhhhcccCcccccceeeeeccccceeeeeeecCCcc-cCCCcCCcCCCCcccchHHHHhhh
Confidence 4555556666666655 67788888888888888888888899999999999955 999999999999999999999999
Q ss_pred CCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCcc
Q 019862 81 EKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIK 160 (334)
Q Consensus 81 ~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~~~a~~~~~lr~fa~~~gi~ 160 (334)
.+.-+.+|+..|+++|.+|+||+..+.....+.++++...+||||+|+++.+||.+..++....+++.++|+.+|++++.
T Consensus 79 ersL~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~ea 158 (502)
T KOG0454|consen 79 ERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVVDGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNEA 158 (502)
T ss_pred hhceeeccCCCCcccceeeecceeccccccccHHHHhhhhhccccceeEecccceEEecCchhhHhHHHHHhhHHHHHhh
Confidence 88878899999999999999999999999999888988889999999999999999999999999999999999999999
Q ss_pred eeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHHhcceEEeecCCeEE
Q 019862 161 YFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLR 240 (334)
Q Consensus 161 ~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tG~~wlkvPetvr 240 (334)
.||+..+..+|...|..+|+||.-...++..+|++...|+|||||+.++.++||.|++++++.....+++..+++|++++
T Consensus 159 gF~wreagcs~clgmnpd~l~~yercastsnRnfEgrqGa~srThlma~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~ 238 (502)
T KOG0454|consen 159 GFYWREAGCSFCLGMNPDGLCHYERCASTSNRNFEGRQGADSRTHLMAASMQFAAGIGGHDLGFREFTGKDSLKVSPSPF 238 (502)
T ss_pred ceehhhccccccccCCchhccHHHHhhhccCCCccccccccccchhhhhhHHhhccccccccccccccccccccCCCCce
Confidence 99888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeeecCChhHHHHhhhcC
Q 019862 241 FVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKT 320 (334)
Q Consensus 241 V~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~pDe~t~~YL~~r~ 320 (334)
+.++|+.++...++|+++.++...-.++..++.+||.+-.. +|+|+.|+|||||..|.+-+.+|+|+|-.|+-|-....
T Consensus 239 l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~ 317 (502)
T KOG0454|consen 239 LTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGMETFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLI 317 (502)
T ss_pred EEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCcceeeeehhhhhhCCcCcccChhhhcccccchhh
Confidence 99999999999999999999999999999999999998877 99999999999999999999999999998887766544
Q ss_pred CCCCccccCCCC
Q 019862 321 SLPYEPVYSDEK 332 (334)
Q Consensus 321 ~~~~~~~~sD~d 332 (334)
+..+-+++.|.+
T Consensus 318 ~~~f~~~~~dg~ 329 (502)
T KOG0454|consen 318 LSCFYEVALDGL 329 (502)
T ss_pred hhhhhhheecCC
Confidence 444444555543
No 35
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=99.94 E-value=6.5e-27 Score=237.82 Aligned_cols=247 Identities=20% Similarity=0.246 Sum_probs=215.6
Q ss_pred eCCCCCCCCCCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEE
Q 019862 50 MAPQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIV 129 (334)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~mTl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~ 129 (334)
..+.+-+|.|..+.+.++|.|++|||+.|++|.+.++||.++..++-.|-+||.|||++-+.+++ +- .-.|+-|-+.
T Consensus 354 l~~s~~F~~p~~p~~sgkG~TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMTrdElk~-lA--clgfsaD~vm 430 (852)
T COG1049 354 LEASDVFRKPKAPAESGKGFTLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMTRDELKD-LA--CLGFSADLVM 430 (852)
T ss_pred CChhhhccCCCCccccCCcccHHHHHhhhccCCccccCCCcccceeeeeccccCCCCccHHHHHH-HH--hhcccchhhh
Confidence 34566899999999999999999999999999999999999999999999999999999999975 32 2467888999
Q ss_pred EEecCCCCCCcHHHHHHHHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCc
Q 019862 130 IIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGA 209 (334)
Q Consensus 130 ~~~DH~vp~~~~~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GA 209 (334)
.+++|..--+.+...++|..|-+|.-+.|.-.. -|+.||+|.++. .+.+|-.+..|+||||...=+
T Consensus 431 QSfCHTAaypkpvdv~th~~Lp~Fi~~rGgVsl------------rpgdGVIHswLN--rmllpDtvgtGGDSHTRfpiG 496 (852)
T COG1049 431 QSFCHTAAYPKPVDVKTHHTLPDFIMNRGGVSL------------RPGDGVIHSWLN--RMLLPDTVGTGGDSHTRFPIG 496 (852)
T ss_pred hhcccccccCCccchhccccchHHHhhcCceec------------CCCCccHHHHHH--hccCCcceecCCccccccccc
Confidence 999998866777788899999999888886442 257899999984 689999999999999998877
Q ss_pred ccceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHH----H--Hhc------ccCccceEEEEe
Q 019862 210 FGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQII----G--EIS------VAGATYKSMEFV 277 (334)
Q Consensus 210 lGa~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii----~--~lg------~~G~~gk~vEF~ 277 (334)
++|+.|+--+|++.+||...+.+||+|.|+++|+|+||++-+||+..|- + .|. .+-+.|+++|..
T Consensus 497 ---isFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIlEie 573 (852)
T COG1049 497 ---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIE 573 (852)
T ss_pred ---ceecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeEEec
Confidence 5999999999999999999999999999999999999999999998653 2 233 233689999996
Q ss_pred cccccCCCHHhHHhhhhhhhhcCceEeeecCC-hhHHHHhhh
Q 019862 278 GTTVERLSMEERMTLCNMVVEAGGKNGVVPAD-GTTFKYLED 318 (334)
Q Consensus 278 G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~~pD-e~t~~YL~~ 318 (334)
|+..|-+|+-++|+..+.|..|+.+.+-.+ |...+||+.
T Consensus 574 --glp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~s 613 (852)
T COG1049 574 --GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKS 613 (852)
T ss_pred --cCcccchhhheeccchhhhhhhccceEecCchhHHHHHHH
Confidence 699999999999999999999999988755 566789864
No 36
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=26.51 E-value=45 Score=31.98 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeee
Q 019862 145 RNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIA 184 (334)
Q Consensus 145 ~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqv 184 (334)
+..+.+++.++++|+-+||..+ .++||+.
T Consensus 133 ~~~~~i~~la~~~GL~fFy~s~-----------Cp~C~~~ 161 (248)
T PRK13703 133 QQRQAIAKLAEHYGLMFFYRGQ-----------DPIDGQL 161 (248)
T ss_pred HHHHHHHHHHhcceEEEEECCC-----------CchhHHH
Confidence 3456689999999998888743 6899993
No 37
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=26.03 E-value=1.9e+02 Score=28.45 Aligned_cols=70 Identities=19% Similarity=0.334 Sum_probs=47.0
Q ss_pred CCCCCCCC-cHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCC-hHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCC
Q 019862 62 TGSVKNAM-TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVC-GPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS 139 (334)
Q Consensus 62 ~~~~~~~m-Tl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t-~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~ 139 (334)
-|+.++|+ +++--+++...... . . .|.||. +|.. -|-+++.++. .|+|+++++|-..+-.
T Consensus 91 wGaRGtGKSSLVKA~~~e~~~~g-l---r--LVEV~k---~dl~~Lp~l~~~Lr~---------~~~kFIlFcDDLSFe~ 152 (287)
T COG2607 91 WGARGTGKSSLVKALLNEYADEG-L---R--LVEVDK---EDLATLPDLVELLRA---------RPEKFILFCDDLSFEE 152 (287)
T ss_pred ecCCCCChHHHHHHHHHHHHhcC-C---e--EEEEcH---HHHhhHHHHHHHHhc---------CCceEEEEecCCCCCC
Confidence 67788887 77777777765432 2 2 455655 4553 4777777742 5789999999998877
Q ss_pred cHHHHHHHHH
Q 019862 140 DERANRNVDI 149 (334)
Q Consensus 140 ~~~~a~~~~~ 149 (334)
+..+.+..|.
T Consensus 153 gd~~yK~LKs 162 (287)
T COG2607 153 GDDAYKALKS 162 (287)
T ss_pred CchHHHHHHH
Confidence 7655555443
No 38
>PF15647 Tox-REase-3: Restriction endonuclease fold toxin 3
Probab=24.97 E-value=61 Score=27.32 Aligned_cols=82 Identities=15% Similarity=0.280 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCCcccCCccEEEEecCCC-CCC-------------cHHHHHHHHHHHHHHHHcCcceeeeccccCCccc
Q 019862 108 SFGIFKKEFGENAKVWDREKIVIIPDHYI-FTS-------------DERANRNVDILRDFCMEQNIKYFYDIKDLGNFKA 173 (334)
Q Consensus 108 ~i~~~~~~~G~~~~V~dP~kv~~~~DH~v-p~~-------------~~~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v 173 (334)
+-+.+++++|...++..-.-+..+.|-++ .++ +.+..++.+...+.|+++|.+-+|-.
T Consensus 13 yed~lr~k~gG~S~~~~~RE~D~Vtd~~i~Q~K~~~s~i~~pkn~lnk~~R~QiK~TieaA~q~gkka~f~F-------- 84 (109)
T PF15647_consen 13 YEDLLREKLGGQSRIKFGREFDVVTDQYIAQAKPTLSAIDKPKNFLNKKTRNQIKATIEAAEQQGKKAYFWF-------- 84 (109)
T ss_pred HHHHHHHHhCCchhhhcccchhhhhHHHHHHhCCccccccchHHHhhHHHHHHHHHHHHHHHHhCCeEEEEe--------
Confidence 33445555554445444444555555544 111 12334556777889999998754321
Q ss_pred CCCCCeeeeeeecceeeeeCCceEEeCC
Q 019862 174 NPDYKGVCHIALAQEGHCRPGEVLLGTD 201 (334)
Q Consensus 174 ~pp~~GI~Hqvl~Eeg~~~PG~vvvGtD 201 (334)
.|..|+-+.|----.-|.++++++
T Consensus 85 ----~~~v~~kv~eY~e~~G~~Vii~t~ 108 (109)
T PF15647_consen 85 ----KGEVHDKVKEYIERYGGKVIIDTK 108 (109)
T ss_pred ----cccccHHHHHHHHHcCcEEEecCC
Confidence 355776544321112467777764
No 39
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=23.65 E-value=1e+02 Score=27.21 Aligned_cols=35 Identities=14% Similarity=0.368 Sum_probs=24.7
Q ss_pred CccEEEEecCCCCCCcHHHHHHHHHHHHHHHHcCccee
Q 019862 125 REKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYF 162 (334)
Q Consensus 125 P~kv~~~~DH~vp~~~~~~a~~~~~lr~fa~~~gi~~f 162 (334)
.+-.++.+||.....+ .+..+.++++|+++||+++
T Consensus 28 ~~~~~~~vdh~~~~~s---~~~~~~v~~~~~~~~i~~~ 62 (182)
T PF01171_consen 28 IKLIAVHVDHGLREES---DEEAEFVEEICEQLGIPLY 62 (182)
T ss_dssp TEEEEEEEE-STSCCH---HHHHHHHHHHHHHTT-EEE
T ss_pred CCeEEEEEecCCCccc---chhHHHHHHHHHhcCCceE
Confidence 3678999999987433 3445667789999999865
No 40
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=21.75 E-value=40 Score=35.92 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=46.8
Q ss_pred eeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhccc
Q 019862 188 EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVA 267 (334)
Q Consensus 188 eg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~ 267 (334)
.++++|||+|+ +|.=|+-+|+.- +.+.-|.+=+ .-.+.|.+=+.+|..++ -.+-++|
T Consensus 373 ~~fl~p~dvii-aetGtS~FG~~~-~~lP~~~~~i-~Q~lWGSIG~t~pAalG--------a~~A~~d------------ 429 (557)
T COG3961 373 QNFLKPGDVII-AETGTSFFGALD-IRLPKGATFI-SQPLWGSIGYTLPAALG--------AALAAPD------------ 429 (557)
T ss_pred HhhCCCCCEEE-Ecccccccccee-eecCCCCeEE-cccchhhcccccHhhhh--------hhhcCCC------------
Confidence 57999999887 477777776642 2222221111 01122222244444433 2233333
Q ss_pred CccceEEEEecccccCCCHHhHHhh
Q 019862 268 GATYKSMEFVGTTVERLSMEERMTL 292 (334)
Q Consensus 268 G~~gk~vEF~G~gv~~Ls~~eR~Tl 292 (334)
-++|=|.|+|--+|++.|.-|+
T Consensus 430 ---rR~IL~iGDGs~QlTvQEiStm 451 (557)
T COG3961 430 ---RRVILFIGDGSLQLTVQEISTM 451 (557)
T ss_pred ---ccEEEEEcCchhhhhHHHHHHH
Confidence 6889999999999999998776
Done!