RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 019862
(334 letters)
>gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the
isomerization between 2-isopropylmalate and
3-isopropylmalate. Aconatase-like catalytic domain of
3-isopropylmalate dehydratase and related
uncharacterized proteins. 3-isopropylmalate dehydratase
catalyzes the isomerization between 2-isopropylmalate
and 3-isopropylmalate, via the formation of
2-isopropylmaleate 3-isopropylmalate. IPMI is involved
in fungal and bacterial leucine biosynthesis and is also
found in eukaryotes.
Length = 382
Score = 335 bits (862), Expect = e-114
Identities = 112/238 (47%), Positives = 149/238 (62%), Gaps = 13/238 (5%)
Query: 97 ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCME 156
+ + HDV P +F ++ E KVWD EKIV + DH + T D +A V LR F E
Sbjct: 1 LHLVHDVTSPQAFEGLREAGRE--KVWDPEKIVAVFDHNVPTPDIKAAEQVKTLRKFAKE 58
Query: 157 QNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATG 216
I F+D+ +G+CH+ L ++G PG ++G DSHTCT GAFG FATG
Sbjct: 59 FGIN-FFDV----------GRQGICHVILPEKGLTLPGMTIVGGDSHTCTHGAFGAFATG 107
Query: 217 IGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEF 276
IG TD VL TGK+ +VP T+R ++G++P + AKD+IL IIG+I V GATYK+MEF
Sbjct: 108 IGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEF 167
Query: 277 VGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKAR 334
G +E LSMEERMTLCNM +EAG K G+V D TTF+YL+ + ++ + SDE A
Sbjct: 168 AGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAYWKELKSDEDAE 225
>gnl|CDD|234748 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit;
Reviewed.
Length = 418
Score = 334 bits (858), Expect = e-113
Identities = 124/267 (46%), Positives = 170/267 (63%), Gaps = 14/267 (5%)
Query: 68 AMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREK 127
MTL EKI +R S + SPGD V VD++M HD+ GP + F+K G+ KV+D K
Sbjct: 2 GMTLAEKILARHSGRDV-SPGDIVEAKVDLVMAHDITGPLAIKEFEKIGGD--KVFDPSK 58
Query: 128 IVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQ 187
IVI+ DH++ D ++ ILR+F EQ I F+D+ + G+CH L +
Sbjct: 59 IVIVFDHFVPAKDIKSAEQQKILREFAKEQGIPNFFDVGE-----------GICHQVLPE 107
Query: 188 EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEM 247
+G RPG+V++G DSHTCT GA G FATG+G+TD + TGK KVP T++ VL+G++
Sbjct: 108 KGLVRPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKL 167
Query: 248 PDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVP 307
P + AKD+IL IIG+I V GATYK++EF G T+E LSM+ERMTL NM +EAG K G+
Sbjct: 168 PPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMDERMTLANMAIEAGAKAGIFA 227
Query: 308 ADGTTFKYLEDKTSLPYEPVYSDEKAR 334
D T +YL+++ Y+P SDE A
Sbjct: 228 PDEKTLEYLKERAGRDYKPWKSDEDAE 254
>gnl|CDD|223143 COG0065, LeuC, 3-isopropylmalate dehydratase large subunit [Amino
acid transport and metabolism].
Length = 423
Score = 306 bits (786), Expect = e-102
Identities = 108/270 (40%), Positives = 152/270 (56%), Gaps = 15/270 (5%)
Query: 67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDRE 126
+A TL EKI K ++ G+ V + +D+ + HDV P +F ++ KV D E
Sbjct: 1 SAKTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGLREA---GRKVRDPE 57
Query: 127 KIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALA 186
K V DH + T D +A LR+ E I FYD+ D +G+ H
Sbjct: 58 KTVATFDHNVPTPDIKAAEQQKELRENAKEFGIVNFYDVGD----------QGIVHQVGP 107
Query: 187 QEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGE 246
++G PG ++G DSHTCT GAFG FA GIG TD VL TGK+ +VP T++ ++G+
Sbjct: 108 EQGLTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGK 167
Query: 247 MPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV 306
+P + AKD+IL +IG+I V G T ++EF G + LSME RMTLCNM +EAG K G++
Sbjct: 168 LPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGII 227
Query: 307 PADGTTFKYLE--DKTSLPYEPVYSDEKAR 334
D TTF+YL+ D ++ + SDE A
Sbjct: 228 APDETTFEYLKEWDGAVAYWKTLKSDEDAV 257
>gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein. This
model represents a subfamily of proteins consisting of
aconitase, homoaconitase, 3-isopropylmalate dehydratase,
and uncharacterized proteins. The majority of the
members of this family have been designated as
3-isopropylmalate dehydratase large subunit (LeuC) in
microbial genome annotation, but the only characterized
member is Thermus thermophilus homoaconitase, an enzyme
of a non-aspartate pathway of Lys biosynthesis.
Length = 412
Score = 267 bits (684), Expect = 5e-87
Identities = 105/264 (39%), Positives = 162/264 (61%), Gaps = 14/264 (5%)
Query: 70 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIV 129
T+ EKI S+ S K ++ GD + +D M HD+ P + ++ + KV+D E+IV
Sbjct: 1 TIAEKILSKHSGK-EVYAGDLIVAEIDQAMVHDITAPLAIRRLEEYGID--KVFDPERIV 57
Query: 130 IIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEG 189
I+ DH + S +A + R+F + IK+F+D+ +G+CH L +EG
Sbjct: 58 IVVDHVVPASTIKAAEMQKLAREFVKKTGIKHFFDVG-----------EGICHQVLPEEG 106
Query: 190 HCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPD 249
+PG++++G DSHTCT GA G FATG+G+TD + + TGK +VP +++ L G++
Sbjct: 107 LVKPGDLVVGADSHTCTYGALGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNP 166
Query: 250 YLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPAD 309
+ AKD+IL++IG+I V GATY +MEF G T++ ++MEERMTL NM +EAGGK G++ D
Sbjct: 167 GVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEERMTLANMAIEAGGKTGIIEPD 226
Query: 310 GTTFKYLEDKTSLPYEPVYSDEKA 333
T YL+++ P+ SDE A
Sbjct: 227 EKTRAYLKERYKEPFRVYKSDEDA 250
>gnl|CDD|233715 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit.
This subfamily is a subset of the larger HacA family
(Homoaconitate hydratase family, TIGR01343) and is most
closely related to the 3-isopropylmalate dehydratase,
large subunits which form TIGR00170. This subfamily
includes the members of TIGR01343 which are gene
clustered with other genes of leucine biosynthesis. The
rest of the subfamily includes mainly archaeal species
which exhibit two hits to this model. In these cases it
is possible that one or the other of the hits does not
have a 3-isopropylmalate dehydratase activity but rather
one of the other related aconitase-like activities.
Length = 412
Score = 247 bits (632), Expect = 2e-79
Identities = 108/266 (40%), Positives = 151/266 (56%), Gaps = 16/266 (6%)
Query: 69 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 128
MTL EKI S +P + G+ V V VD+ M HD GP + ++ A+V D EKI
Sbjct: 1 MTLAEKILSEKVGRP-VEAGEIVEVEVDLAMAHDGTGPLAIETLREL---GARVEDPEKI 56
Query: 129 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 188
VI DH + A +R+F E I F +G+CH L +E
Sbjct: 57 VIFFDHVVPPPTVEAANRQKEIREFAKEHGIP---------VFDVG---EGICHQVLVEE 104
Query: 189 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 248
G+ PG V++G DSHTCT+GA G FATG+G TD L TGK LKVP +++ V++G+
Sbjct: 105 GYAGPGMVVVGGDSHTCTSGAVGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPE 164
Query: 249 DYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 308
+ + AKD+ L I+GE+ GATY ++EF G +E +SM+ERMTLCNM VEAG K G+V
Sbjct: 165 EGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDERMTLCNMAVEAGAKAGIVVP 224
Query: 309 DGTTFKYLEDKTSLPYEPVYSDEKAR 334
D T++YL+ + + + D A+
Sbjct: 225 DEETYEYLKKRRGYEFRILRPDPGAK 250
>gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit.
Homoaconitase, aconitase, and 3-isopropylmalate
dehydratase have similar overall structures. All are
dehydratases (EC 4.2.1.-) and bind a Fe-4S iron-sulfur
cluster. 3-isopropylmalate dehydratase is split into
large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble the leuC and
leuD pair in length and sequence but even more closely
resemble the respective domains of homoaconitase, and
their identity is uncertain. These homologs are
described by a separate model of subfamily (rather than
equivalog) homology type (TIGR01343). This model along
with TIGR00170 describe clades which consist only of
LeuC sequences. Here, the genes from Pyrococcus
furiosus, Clostridium acetobutylicum, Thermotoga
maritima and others are gene clustered with related
genes from the leucine biosynthesis pathway [Amino acid
biosynthesis, Pyruvate family].
Length = 419
Score = 229 bits (586), Expect = 2e-72
Identities = 101/266 (37%), Positives = 161/266 (60%), Gaps = 12/266 (4%)
Query: 69 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 128
MT+ EKI ++ + + PG+ + +DI++ +D+ P + FK+ G+ KV+D +++
Sbjct: 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFKEYGGK--KVFDPDRV 58
Query: 129 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 188
++PDH+ D ++ ++R+F EQ I+ F++I GN G+ H L +E
Sbjct: 59 ALVPDHFTPNKDIKSAEQCKMMREFAREQGIEKFFEI---GNM-------GIEHALLPEE 108
Query: 189 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 248
G +PG++++G DSHTCT GA G FATG+G+TD + TGK +VP ++FVL G++
Sbjct: 109 GIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLK 168
Query: 249 DYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 308
++ KDLIL IIG I V GA YKSMEF G ++ LSM++R T+ NM +EAG K G+ P
Sbjct: 169 PWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFPV 228
Query: 309 DGTTFKYLEDKTSLPYEPVYSDEKAR 334
D T +Y + + + +DE A+
Sbjct: 229 DEITIEYEKGRGKREEKIYKADEDAK 254
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit;
Provisional.
Length = 471
Score = 186 bits (474), Expect = 4e-55
Identities = 88/270 (32%), Positives = 127/270 (47%), Gaps = 37/270 (13%)
Query: 87 PGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDER---- 142
+V + +D + ++ P +F V + + + DH + T R
Sbjct: 20 DDGHVLLYIDRHLLNEYTSPQAF---SGLRARGRTVRRPDLTLAVVDHVVPTRPGRDRGI 76
Query: 143 ----ANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLL 198
VD LR+ C + I+ F D+ D P +G+ H+ + G PG V++
Sbjct: 77 TDPGGALQVDYLRENCADFGIRLF-DVDD-------PR-QGIVHVVAPELGLTLPGMVIV 127
Query: 199 GTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLIL 258
DSHT T GA G A GIG ++ VL T ++ + P T+R +DGE+P + AKDLIL
Sbjct: 128 CGDSHTTTYGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLIL 187
Query: 259 QIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLED 318
+I I GAT ++EF G + LSME RMTLCNM VEAG + G++ D TTF YL
Sbjct: 188 ALIARIGADGATGYAIEFAGEAIRALSMEGRMTLCNMAVEAGARGGLIAPDETTFDYLRG 247
Query: 319 KTSLPYEP--------------VYSDEKAR 334
+ P P + SD A
Sbjct: 248 R---PRAPKGALWDAALAYWRTLRSDADAV 274
>gnl|CDD|235490 PRK05478, PRK05478, isopropylmalate isomerase large subunit;
Validated.
Length = 466
Score = 153 bits (390), Expect = 6e-43
Identities = 79/213 (37%), Positives = 114/213 (53%), Gaps = 19/213 (8%)
Query: 121 KVWDREKIVIIPDHYIFT-------SDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKA 173
KV + DH + T +D + V+ L C E I +D+ D
Sbjct: 50 KVRRPDLTFATMDHNVPTTDRDLPIADPVSRIQVETLEKNCKEFGIT-LFDLGD------ 102
Query: 174 NPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLL 233
+G+ H+ ++G PG ++ DSHT T GAFG A GIG ++ VL T +L
Sbjct: 103 --PRQGIVHVVGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQ 160
Query: 234 KVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLC 293
K P T++ +DG++P + AKD+IL IIG+I AG T +EF G + LSME RMT+C
Sbjct: 161 KKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSMEGRMTIC 220
Query: 294 NMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEP 326
NM +EAG + G+V D TTF+YL+ + P+ P
Sbjct: 221 NMSIEAGARAGLVAPDETTFEYLKGR---PFAP 250
>gnl|CDD|215861 pfam00330, Aconitase, Aconitase family (aconitate hydratase).
Length = 464
Score = 150 bits (380), Expect = 1e-41
Identities = 81/250 (32%), Positives = 123/250 (49%), Gaps = 5/250 (2%)
Query: 70 TLTEKIF-SRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 128
TL EKI + + +++ D ++ DV P +F + G + I
Sbjct: 1 TLYEKILDAHVDDPANERGTPYLYIRPDRVLMQDVTSPQAFLGLR-AAGRPVRRVPGTTI 59
Query: 129 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 188
DH I + + ++++I + EQ ++K G P G+ H +
Sbjct: 60 TC--DHNI-PTQDGGEKDLNIAIERNKEQYDFLEKNVKAFGVGFWGPGSTGIVHQIGLEN 116
Query: 189 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 248
G PG L+GTDSHT T G G A G+G ++A VL K P + L G++
Sbjct: 117 GFTLPGLTLVGTDSHTPTHGGLGALAFGVGGSEAEHVLAGQPWEQKKPKVMGIKLTGKLN 176
Query: 249 DYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 308
+ AKD+IL++IG+++V G T K +EF G ++ LSME RMT+CNM +E G G+ P
Sbjct: 177 GGITAKDVILKVIGKLTVKGGTGKIVEFFGEGIDDLSMEGRMTICNMAIEIGATTGLFPP 236
Query: 309 DGTTFKYLED 318
D TTFKYL+
Sbjct: 237 DETTFKYLKG 246
>gnl|CDD|153129 cd01351, Aconitase, Aconitase catalytic domain; Aconitase catalyzes
the reversible isomerization of citrate and isocitrate
as part of the TCA cycle. Aconitase catalytic domain.
Aconitase (aconitate hydratase) catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Cis-aconitate is formed as an intermediate
product during the course of the reaction. In eukaryotes
two isozymes of aconitase are known to exist: one found
in the mitochondrial matrix and the other found in the
cytoplasm. Aconitase, in its active form, contains a
4Fe-4S iron-sulfur cluster; three cysteine residues
have been shown to be ligands of the 4Fe-4S cluster.
This is the Aconitase core domain, including structural
domains 1, 2 and 3, which binds the Fe-S cluster. The
aconitase family also contains the following proteins: -
Iron-responsive element binding protein (IRE-BP), a
cytosolic protein that binds to iron-responsive elements
(IREs). IREs are stem-loop structures found in the
5'UTR of ferritin, and delta aminolevulinic acid
synthase mRNAs, and in the 3'UTR of transferrin
receptor mRNA. IRE-BP also express aconitase activity. -
3-isopropylmalate dehydratase (isopropylmalate
isomerase), the enzyme that catalyzes the second step in
the biosynthesis of leucine. - Homoaconitase
(homoaconitate hydratase), an enzyme that participates
in the alpha-aminoadipate pathway of lysine
biosynthesis and that converts cis-homoaconitate into
homoisocitric acid.
Length = 389
Score = 146 bits (371), Expect = 5e-41
Identities = 71/221 (32%), Positives = 104/221 (47%), Gaps = 14/221 (6%)
Query: 98 LMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQ 157
+M D GP + F+ KV D +I + DH + N L F Q
Sbjct: 2 VMLQDATGPMAMKAFE-ILAALGKVADPSQIACVHDHAVQLEKPVNNEGHKFLSFFAALQ 60
Query: 158 NIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGI 217
I FY G+ H + E PG++L+G+DSHT + G G +TG
Sbjct: 61 GI-AFYRPGV-----------GIIH-QIMVENLALPGDLLVGSDSHTTSYGGLGAISTGA 107
Query: 218 GNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFV 277
G D FV+ G LK P + L G++ + KD++L++ G + V G + +EF
Sbjct: 108 GGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFY 167
Query: 278 GTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLED 318
G V LS+E+R+T+CNM+ E G G+ P D TT K+LE
Sbjct: 168 GEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWLEA 208
>gnl|CDD|232854 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit.
Members of this family are 3-isopropylmalate
dehydratase, large subunit, or the large subunit domain
of single-chain forms. Homoaconitase, aconitase, and
3-isopropylmalate dehydratase have similar overall
structures. All are dehydratases (EC 4.2.1.-) and bind a
Fe-4S iron-sulfur cluster. 3-isopropylmalate dehydratase
is split into large (leuC) and small (leuD) chains in
eubacteria. Several pairs of archaeal proteins resemble
the leuC and leuD pair in length and sequence but even
more closely resemble the respective domains of
homoaconitase, and their identity is uncertain. These
homologs are now described by a separate model of
subfamily (rather than equivalog) homology type, and the
priors and cutoffs for this model have been changed to
focus this equivalog family more narrowly [Amino acid
biosynthesis, Pyruvate family].
Length = 465
Score = 140 bits (355), Expect = 4e-38
Identities = 88/271 (32%), Positives = 131/271 (48%), Gaps = 34/271 (12%)
Query: 68 AMTLTEKIFS-----RASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKV 122
TL EK+F A + L + +D + H+V P +F ++ KV
Sbjct: 2 PRTLYEKLFDAHIVYEAEGETPL-------LYIDRHLIHEVTSPQAFEGLRQA---GRKV 51
Query: 123 WDREKIVIIPDHYIFTS-------DERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANP 175
+K DH I T DE A V L C E ++ F D+ +
Sbjct: 52 RRPQKTFATMDHNIPTQNRDFNIKDEVAKIQVTELEKNCKEFGVRLF-DLHSV------- 103
Query: 176 DYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKV 235
+G+ H+ ++G PG ++ DSHT T GAFG A GIG ++ VL T +
Sbjct: 104 -DQGIVHVMGPEQGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQAR 162
Query: 236 PPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNM 295
T++ +DG++ + AKD+IL IIG+ VAG T +EF G + LSME RMT+CNM
Sbjct: 163 AKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNM 222
Query: 296 VVEAGGKNGVVPADGTTFKYLEDKTSLPYEP 326
+EAG + G++ D TTF+Y + + P+ P
Sbjct: 223 AIEAGARAGLIAPDETTFEYCKGR---PHAP 250
>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex
type. This model represents a small family of proteins
homologous (and likely functionally equivalent to)
aconitase 1. Members are found, so far in the anaerobe
Clostridium acetobutylicum, in the microaerophilic,
early-branching bacterium Aquifex aeolicus, and in the
halophilic archaeon Halobacterium sp. NRC-1. No member
is experimentally characterized [Energy metabolism, TCA
cycle].
Length = 658
Score = 120 bits (302), Expect = 4e-30
Identities = 77/247 (31%), Positives = 116/247 (46%), Gaps = 16/247 (6%)
Query: 70 TLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIV 129
TL EKI + L PG+ + + +D ++ D G + F+ + K E
Sbjct: 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEALEMDEVKT---ELAA 57
Query: 130 IIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEG 189
DH + D +N D + F M K+ GN G+CH + +E
Sbjct: 58 QYCDHNMLQFD---FKNADDHK-FLMSAAGKFGAWFSKPGN--------GICH-NVHKEN 104
Query: 190 HCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPD 249
PG+ LLG+DSHT TAG G A G G D + L++P + L+GE+P+
Sbjct: 105 FAAPGKTLLGSDSHTPTAGGLGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPE 164
Query: 250 YLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPAD 309
+ AKD+IL+++ +SV G K E+ G VE LS+ ER T+ NM E G + + P+D
Sbjct: 165 WATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSD 224
Query: 310 GTTFKYL 316
T +L
Sbjct: 225 DITEAWL 231
>gnl|CDD|153135 cd01585, AcnA_Bact, Aconitase catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Bacterial Aconitase-like catalytic domain.
Aconitase (aconitate hydratase or citrate hydrolyase)
catalyzes the reversible isomerization of citrate and
isocitrate as part of the TCA cycle. Cis-aconitate is
formed as an intermediate product during the course of
the reaction. This distinct subfamily is found only in
bacteria and Archaea. Its exact characteristics are not
known.
Length = 380
Score = 114 bits (286), Expect = 8e-29
Identities = 50/139 (35%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Query: 179 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPT 238
G+CH + E PG+ LLG+DSHT TAG G A G G D + + +P
Sbjct: 69 GICH-QVHLERFAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKV 127
Query: 239 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298
+ L GE+P ++ AKD+IL+++ ++V G K E+ G V LS+ ER T+ NM E
Sbjct: 128 VGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAE 187
Query: 299 AGGKNGVVPADGTTFKYLE 317
G + P+D T ++L
Sbjct: 188 LGATTSIFPSDERTREFLA 206
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion].
Length = 861
Score = 114 bits (288), Expect = 3e-28
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 8/156 (5%)
Query: 170 NFKANPDYKGVCHIA----LAQEGHCRPG----EVLLGTDSHTCTAGAFGQFATGIGNTD 221
NF+ P G+ H LA+ +PG + L+GTDSHT G G G+G +
Sbjct: 161 NFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIE 220
Query: 222 AGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTV 281
A + + +P + L G++P+ + A DL+L + G + G K +EF G V
Sbjct: 221 AEAAMLGQPWYMLIPEVVGVKLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGV 280
Query: 282 ERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLE 317
LS+ +R T+ NM E G +G P D T YL
Sbjct: 281 ASLSLADRATIANMGPEYGATSGFFPIDEETLDYLR 316
>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated.
Length = 646
Score = 106 bits (267), Expect = 2e-25
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 179 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPT 238
G+CH + E PG+ LLG+DSHT TAG G A G G D + G LK+P
Sbjct: 98 GICH-QVHLERFAFPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGGPYYLKMPKV 156
Query: 239 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298
+ L G++P ++ AKD+IL+++ ++V G K +E+ G V LS+ ER T+ NM E
Sbjct: 157 VGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNMGAE 216
Query: 299 AGGKNGVVPADGTTFKYL------EDKTSLPYEPVYSDEKA 333
G + P+D T ++L +D + + +D A
Sbjct: 217 LGATTSIFPSDERTREFLKAQGREDD-----WVELLADPDA 252
>gnl|CDD|153132 cd01582, Homoaconitase, Homoaconitase and other uncharacterized
proteins of the Aconitase family. Homoaconitase
catalytic domain. Homoaconitase and other
uncharacterized proteins of the Aconitase family.
Homoaconitase is part of an unusual lysine biosynthesis
pathway found only in filamentous fungi, in which lysine
is synthesized via the alpha-aminoadipate pathway. In
this pathway, homoaconitase catalyzes the conversion of
cis-homoaconitic acid into homoisocitric acid. The
reaction mechanism is believed to be similar to that of
other aconitases.
Length = 363
Score = 98.5 bits (245), Expect = 3e-23
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 17/212 (8%)
Query: 99 MTHDVCGPGSFGIFKKEFGENA-KVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQ 157
MTHD P + K A K+ + ++IV+ DH + E+ + + F +
Sbjct: 3 MTHDNSWP----VALKFMSIGATKIHNPDQIVMTLDHDVQNKSEKNLKKYKNIESFAKKH 58
Query: 158 NIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGI 217
I ++ P +G+ H + +EG+ PG + + +DSH+ G G T I
Sbjct: 59 GIDFY------------PAGRGIGHQIMIEEGYAFPGTLAVASDSHSNMYGGVGCLGTPI 106
Query: 218 GNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFV 277
TDA + TG+ ++PP + L G++P + KD+I+ + G + ++EF
Sbjct: 107 VRTDAAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFT 166
Query: 278 GTTVERLSMEERMTLCNMVVEAGGKNGVVPAD 309
G+ + LS++ R+T+ NM E G +G+ P D
Sbjct: 167 GSGLNSLSVDTRLTIANMTTEWGALSGLFPTD 198
>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase. Homoaconitase is known only
as a fungal enzyme from two species, where it is part of
an unusual lysine biosynthesis pathway. Because This
model is based on just two sequences from a narrow
taxonomic range, it may not recognize distant orthologs,
should any exist. Homoaconitase, aconitase, and
3-isopropylmalate dehydratase have similar overall
structures, but 3-isopropylmalate dehydratase is split
into large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble leuC and
leuD over their lengths but are even closer to the
respective domains of homoaconitase, and their identity
is uncertain [Amino acid biosynthesis, Aspartate
family].
Length = 712
Score = 98.6 bits (245), Expect = 1e-22
Identities = 70/260 (26%), Positives = 121/260 (46%), Gaps = 23/260 (8%)
Query: 70 TLTEKIF-SRASEKPQ---LSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENA-KVWD 124
LTEKI A P+ + GD V + M+HD P + K G A K+ +
Sbjct: 3 NLTEKIVQKYAVGLPEGKFVHSGDYVSIKPAHCMSHDNSWPCAL----KFMGIGASKIHN 58
Query: 125 REKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIA 184
++IV+ DH I ++ + + +F + I ++ P +G+ H
Sbjct: 59 PDQIVMTLDHDIQNKSDKNLKKYKNIEEFAKKHGIDFY------------PAGRGIGHQI 106
Query: 185 LAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLD 244
+ +EG PG + + +DSH+ G G T I TDA + TGK ++PP +
Sbjct: 107 MIEEGFAFPGNLAVASDSHSNMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFK 166
Query: 245 GEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGT--TVERLSMEERMTLCNMVVEAGGK 302
G++P + KD+I+ + G + ++EF G+ ++ L ++ R+T+ NM E G
Sbjct: 167 GQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLNALPIDHRLTIANMTTEWGAL 226
Query: 303 NGVVPADGTTFKYLEDKTSL 322
+G+ P D T +L+ K +L
Sbjct: 227 SGLFPIDKTLIDWLKGKATL 246
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Mitochondrial aconitase A catalytic domain.
Aconitase (also known as aconitate hydratase and citrate
hydro-lyase) catalyzes the reversible isomerization of
citrate and isocitrate as part of the TCA cycle.
Cis-aconitate is formed as an intermediary product
during the course of the reaction. In eukaryotes two
isozymes of aconitase are known to exist: one found in
the mitochondrial matrix and the other found in the
cytoplasm. This is the mitochondrial form. The
mitochondrial product is coded by a nuclear gene. Most
members of this subfamily are mitochondrial but there
are some bacterial members.
Length = 412
Score = 86.3 bits (214), Expect = 7e-19
Identities = 47/130 (36%), Positives = 68/130 (52%)
Query: 188 EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEM 247
E + PG +++GTDSHT AG G A G+G DA V+ LK P + L G++
Sbjct: 85 ENYAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGKL 144
Query: 248 PDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVP 307
+ KD+IL++ G ++V G T +E+ G V+ LS T+CNM E G V P
Sbjct: 145 SGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFP 204
Query: 308 ADGTTFKYLE 317
+ KYL+
Sbjct: 205 YNERMKKYLK 214
>gnl|CDD|233362 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial.
This model represents mitochondrial forms of the TCA
cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydro-lyase [Energy metabolism,
TCA cycle].
Length = 745
Score = 84.2 bits (208), Expect = 7e-18
Identities = 48/130 (36%), Positives = 67/130 (51%)
Query: 188 EGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEM 247
E + PG ++LGTDSHT AG G A G+G DA L LK P L L G++
Sbjct: 142 ENYAFPGLMMLGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKL 201
Query: 248 PDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVP 307
+ KD+IL++ G ++V G T +E+ G VE LS T+CNM E G + P
Sbjct: 202 NGWTSPKDIILKLAGLLTVRGGTGYIVEYFGPGVESLSCTGMATICNMGAEIGATTSIFP 261
Query: 308 ADGTTFKYLE 317
+ +YL+
Sbjct: 262 FNEAMSRYLK 271
>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1. This model
represents one form of the TCA cycle enzyme aconitate
hydratase, also known as aconitase and citrate
hydro-lyase. It is found in bacteria, archaea, and
eukaryotic cytosol. It has been shown to act also as an
iron-responsive element binding protein in animals and
may have the same role in other eukaryotes [Energy
metabolism, TCA cycle].
Length = 876
Score = 73.3 bits (180), Expect = 3e-14
Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 14/161 (8%)
Query: 170 NFKANPDYKGVCH-------------IALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATG 216
NF+ P G+ H + E P + L+GTDSHT G G
Sbjct: 152 NFRVVPPGTGIIHQVNLEYLATVVFKAEVDGELTAYP-DSLVGTDSHTTMINGLGVLGWG 210
Query: 217 IGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEF 276
+G +A + + VP + L G++ + + A DL+L + + G K +EF
Sbjct: 211 VGGIEAEAAMLGQPYYMNVPEVIGVKLTGKLQEGVTATDLVLTVTQMLRKKGVVGKFVEF 270
Query: 277 VGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLE 317
G + LS+ +R T+ NM E G G P D T +YL
Sbjct: 271 FGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLR 311
>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional.
Length = 898
Score = 71.6 bits (176), Expect = 1e-13
Identities = 39/120 (32%), Positives = 61/120 (50%)
Query: 197 LLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDL 256
++GTDSHT G G+G +A V+ + + +P + F L G++ +++ A DL
Sbjct: 211 VVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATDL 270
Query: 257 ILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYL 316
+L + + G K +EF G V+ LS+ +R T+ NM E G G P D T YL
Sbjct: 271 VLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMGFFPIDEKTLDYL 330
>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain. Aconitase A
catalytic domain. This is the major form of the TCA
cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydrolyase. It includes bacterial
and archaeal aconitase A, and the eukaryotic cytosolic
form of aconitase. This group also includes sequences
that have been shown to act as an iron-responsive
element (IRE) binding protein in animals and may have
the same role in other eukaryotes.
Length = 404
Score = 63.1 bits (154), Expect = 5e-11
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 14/160 (8%)
Query: 166 KDLGNFKANPDYKGVCH-------------IALAQEGHCRPGEVLLGTDSHTCTAGAFGQ 212
K N + P G+ H +G P + ++GTDSHT G
Sbjct: 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYP-DSVVGTDSHTTMINGLGV 139
Query: 213 FATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYK 272
G+G +A V+ + + +P + L G++ + A DL+L + + G K
Sbjct: 140 LGWGVGGIEAEAVMLGQPISMLLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGK 199
Query: 273 SMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTT 312
+EF G V +LS+ +R T+ NM E G G P D
Sbjct: 200 FVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVDTQV 239
>gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional.
Length = 889
Score = 61.5 bits (150), Expect = 2e-10
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 170 NFKANPDYKGVCH---------IALAQEGHCRPGEV---LLGTDSHTCTAGAFGQFATGI 217
NF+ P G+ H + +E L+GTDSHT G G+
Sbjct: 169 NFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGV 228
Query: 218 GNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLIL---QIIGEISVAGATYKSM 274
G +A V+ V + +P + L G++ + + A DL+L +++ + V G K +
Sbjct: 229 GGIEAEAVMLGQPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVG---KFV 285
Query: 275 EFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLE 317
EF G V L++ +R T+ NM E G G P D T YL
Sbjct: 286 EFFGEGVASLTLGDRATIANMAPEYGATMGFFPVDEQTLDYLR 328
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase.
Length = 936
Score = 61.4 bits (149), Expect = 3e-10
Identities = 38/120 (31%), Positives = 59/120 (49%)
Query: 197 LLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDL 256
++GTDSHT G G+G +A + + + +P + F L G++ D + A DL
Sbjct: 243 VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDL 302
Query: 257 ILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYL 316
+L + + G K +EF G + LS+ +R T+ NM E G G P D T +YL
Sbjct: 303 VLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 362
>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase,
Fe/S-dependent. Members of this family appear in an
operon for the degradation of propionyl-CoA via
2-methylcitrate. This family is homologous to aconitases
A and B and appears to act the part as
2-methylisocitrate dehydratase, the enzyme after PrpD
and before PrpB. In Escherichia coli, which lacks a
member of this family, 2-methylisocitrate dehydratase
activity was traced to aconitase B (TIGR00117)
(PMID:12473114).
Length = 858
Score = 54.6 bits (131), Expect = 3e-08
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 1/131 (0%)
Query: 186 AQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDG 245
+ G P + +GTDSHT A G A G+G +A V+ ++++P + L G
Sbjct: 185 VKNGVAFP-DTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTG 243
Query: 246 EMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGV 305
+ + A D++L + + +EF G L++ +R T+ NM E G +
Sbjct: 244 KRQPGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAM 303
Query: 306 VPADGTTFKYL 316
D T YL
Sbjct: 304 FYIDEQTIDYL 314
>gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated.
Length = 888
Score = 45.9 bits (110), Expect = 2e-05
Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 19/163 (11%)
Query: 170 NFKANPDYKGVCHIA----LAQEGHCRPG-------EVLLGTDSHTCTAGAFGQFATGIG 218
NF+ P G+CH LA R + L+GTDSHT G G+G
Sbjct: 170 NFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVG 229
Query: 219 NTDAGFV-LGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLIL---QIIGEISVAGATYKSM 274
+A LG + +P + L G++P+ + A DL+L +++ + V G K +
Sbjct: 230 GIEAEAAMLGQ-PSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVG---KFV 285
Query: 275 EFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLE 317
EF G + LS+ +R T+ NM E G G P D T YL
Sbjct: 286 EFFGEGLASLSLADRATIANMAPEYGATCGFFPIDEETLDYLR 328
>gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional.
Length = 751
Score = 42.3 bits (100), Expect = 3e-04
Identities = 44/132 (33%), Positives = 55/132 (41%), Gaps = 35/132 (26%)
Query: 182 HIAL----AQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPP 237
HIA+ +E G+++LG+DSHT GA G A G G G L+K
Sbjct: 126 HIAVIHQYMREMMAGGGKMILGSDSHT-RYGALGTMAVGEG----------GGELVK--Q 172
Query: 238 TLRFVLDGEMPD----YLLAK--------DLILQIIGEISVAGATY-KSMEFVGTTVERL 284
L D + P YL K D+ L IIG + G K MEFVG V L
Sbjct: 173 LLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSAL 232
Query: 285 SMEER-----MT 291
S + R MT
Sbjct: 233 STDFRNGVDVMT 244
>gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system
protein KefC; Provisional.
Length = 621
Score = 32.3 bits (74), Expect = 0.35
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 197 LLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDL 256
LL + T GAF A + A VLG G+ + + P LRFV + + A L
Sbjct: 169 LLAASGASTTLGAFALSALKVAGALALVVLG-GRYVTR--PALRFVARSGLREVFTAVAL 225
Query: 257 IL 258
L
Sbjct: 226 FL 227
>gnl|CDD|223978 COG1049, AcnB, Aconitase B [Energy production and conversion].
Length = 852
Score = 31.6 bits (72), Expect = 0.62
Identities = 61/301 (20%), Positives = 103/301 (34%), Gaps = 65/301 (21%)
Query: 50 MAPQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSF 109
+ R+P TL +K+ RA P + PG + + + D GP
Sbjct: 354 LEASDVFRKPKAPAESGKGFTLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGP--- 410
Query: 110 GIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLG 169
+ + E + A + F++D +++ FC + + D+
Sbjct: 411 -MTRDELKDLACL-------------GFSADL-------VMQSFC---HTAAYPKPVDVK 446
Query: 170 NFKANPDY------------KGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGI 217
PD+ GV H L + P V G DSHT +F GI
Sbjct: 447 THHTLPDFIMNRGGVSLRPGDGVIHSWLNRML--LPDTVGTGGDSHT-------RFPIGI 497
Query: 218 ----GNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLI----LQII--GEISVA 267
G+ F TG + L +P ++ GEM + +DL+ I G ++V
Sbjct: 498 SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVE 557
Query: 268 GATYKSMEFVGTTVE-----RLSMEERMTLCNMVVEAGGKNGVVP-ADGTTFKYLEDKTS 321
K++ F G +E L +E+ L + E + +YL+
Sbjct: 558 KKGKKNI-FSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIV 616
Query: 322 L 322
L
Sbjct: 617 L 617
>gnl|CDD|233923 TIGR02551, SpaO_YscQ, type III secretion system apparatus protein
YscQ/HrcQ. Genes in this family are found in type III
secretion operons. The gene (YscQ) in Yersinia is
essential for YOPs secretion , while SpaO in Shigella is
involved in the Surface Presentation of Antigens
apparatus found on the virulence plasmid , and HrcQ is
involved in the Harpin secretory system in organisms
like Pseudomonas syringae [Protein fate, Protein and
peptide secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 298
Score = 30.5 bits (69), Expect = 1.2
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 179 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATG 216
G +AL + G+VLL + AG G
Sbjct: 146 GSSRLALDELRSLEVGDVLLLDNPSAARAGLGALLLWG 183
>gnl|CDD|216387 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45
family. This family includes: Ribosomal L7A from
metazoa, Ribosomal L8-A and L8-B from fungi, 30S
ribosomal protein HS6 from archaebacteria, 40S ribosomal
protein S12 from eukaryotes, Ribosomal protein L30 from
eukaryotes and archaebacteria. Gadd45 and MyD118.
Length = 95
Score = 28.7 bits (65), Expect = 1.2
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 127 KIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFY--DIKDLG 169
K+VII D V +L C E+N+ Y Y K+LG
Sbjct: 33 KLVII------AEDCDPEEKVKLLPALCKEKNVPYVYVPSKKELG 71
>gnl|CDD|235169 PRK03879, PRK03879, ribonuclease P protein component 1; Validated.
Length = 96
Score = 28.4 bits (64), Expect = 1.5
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 261 IG-EISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKY 315
IG ++ V +T S+ VG R+ E R TL V+E GK +VP DG TF++
Sbjct: 14 IGLKVEVVDSTNPSL--VGIK-GRVVDETRNTL---VIETDGKEWMVPKDGATFEF 63
>gnl|CDD|181735 PRK09262, PRK09262, hypothetical protein; Provisional.
Length = 225
Score = 29.5 bits (67), Expect = 2.1
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 182 HIALAQEGHCRPGEVLLGTDSHTCTAGAFGQ-FAT 215
H+A+ Q C+PG+VL+ + CT G FG AT
Sbjct: 69 HVAVEQ---CQPGDVLVVAPTSPCTDGFFGDLLAT 100
>gnl|CDD|215806 pfam00229, TNF, TNF(Tumour Necrosis Factor) family.
Length = 127
Score = 28.5 bits (64), Expect = 2.5
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 84 QLSPGDNVWVNVDILMTHDVCGPGS--FGIFK 113
QL GD + VNV L D+ PG FG F
Sbjct: 95 QLRAGDRLSVNVSNLSLVDLSEPGKTFFGAFL 126
>gnl|CDD|153131 cd01581, AcnB, Aconitate hydratase B catalyses the formation of
cis-aconitate from citrate as part of the TCA cycle.
Aconitase B catalytic domain. Aconitate hydratase B
catalyses the formation of cis-aconitate from citrate as
part of the TCA cycle. Aconitase has an active (4FE-4S)
and an inactive (3FE-4S) form. The active cluster is
part of the catalytic site that interconverts citrate,
cis-aconitase and isocitrate. The domain architecture of
aconitase B is different from other aconitases in that
the catalytic domain is normally found at C-terminus for
other aconitases, but it is at N-terminus for B family.
It also has a HEAT domain before domain 4 which plays a
role in protein-protein interaction. This alignment is
the core domain including domains 1,2 and 3.
Length = 436
Score = 29.8 bits (67), Expect = 2.5
Identities = 61/280 (21%), Positives = 99/280 (35%), Gaps = 65/280 (23%)
Query: 71 LTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVI 130
L +KI RA + PG + + + D GP + + E E A +
Sbjct: 1 LAQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGP----MTRDELKELACL-------- 48
Query: 131 IPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDY------------K 178
F++D +++ FC + + D+ + PD+
Sbjct: 49 -----GFSADL-------VMQSFC---HTAAYPKPVDVKTHRTLPDFISNRGGVALRPGD 93
Query: 179 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGI----GNTDAGFVLGTGKVLLK 234
GV H L + P V G DSHT +F GI G+ F TG + L
Sbjct: 94 GVIHSWLNRML--LPDTVGTGGDSHT-------RFPIGISFPAGSGLVAFAAATGVMPLD 144
Query: 235 VPPTLRFVLDGEMPDYLLAKDLI----LQII--GEISVAGATYKSMEFVGTTVE-----R 283
+P ++ G+M + +DL+ I G ++V K++ F G +E
Sbjct: 145 MPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNV-FNGRILEIEGLPD 203
Query: 284 LSMEERMTLCNMVVEAGGKNGVVPADGTTF-KYLEDKTSL 322
L +E+ L + E V D +YLE L
Sbjct: 204 LKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVL 243
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins with an N-terminal kinase catalytic domain and
a C-terminal actin-binding motor domain. Class III
myosins are present in the photoreceptors of
invertebrates and vertebrates and in the auditory hair
cells of mammals. The kinase domain of myosin III can
phosphorylate several cytoskeletal proteins,
conventional myosin regulatory light chains, and can
autophosphorylate the C-terminal motor domain. Myosin
III may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
It may also function as a cargo carrier during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated protein
kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or
MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in
some MAPK signaling pathways by activating a MAPK kinase
kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Length = 275
Score = 29.2 bits (66), Expect = 2.5
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 102 DVCGPGSFG-IFK---KEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQ 157
+V G G++G ++K K+ G+ + KI+ I +E +ILR +
Sbjct: 12 EVIGEGTYGKVYKARHKKTGQLVAI----KIM----DIIEDEEEEIKEEYNILRKYSNHP 63
Query: 158 NIKYFY 163
NI FY
Sbjct: 64 NIATFY 69
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy
production and conversion].
Length = 588
Score = 29.2 bits (66), Expect = 3.7
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 104 CGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDF 153
PG FG K IVI ER N ++L++F
Sbjct: 228 AVPGPFGSGKTVSQHTLSKLADGDIVIYVGCG-----ERGNEMTEVLQEF 272
>gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed.
Length = 425
Score = 28.7 bits (65), Expect = 4.1
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 14/54 (25%)
Query: 59 PATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNV------DILMTHDVCGP 106
G VK+ E++ PQ PGDN+ NV DI DVCG
Sbjct: 263 AGVVGEVKSIEMHHEEL-------PQAEPGDNIGFNVRGVGKKDI-KRGDVCGH 308
>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal. This
domain is often found in association with the kinase
domains pfam00069 or pfam07714. In many proteins it is
duplicated. It contains six conserved cysteines which
are involved in disulphide bridges. It has a role in
salt stress response and has antifungal activity.
Length = 106
Score = 27.4 bits (61), Expect = 5.1
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 184 ALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTG 229
LAQ CR L +D +C A A + N G +
Sbjct: 56 GLAQ---CRGD--LSASDCRSCLATAVSELRRCCPNKKGGRIWYDS 96
>gnl|CDD|223781 COG0709, SelD, Selenophosphate synthase [Amino acid transport and
metabolism].
Length = 346
Score = 28.5 bits (64), Expect = 5.8
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 96 DILMTHDVCGPGSFGIFKKEFGENAKV 122
+ DV G G G KE E A V
Sbjct: 221 GVAAMTDVTGFGLLGHL-KEMAEGAGV 246
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.398
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,959,476
Number of extensions: 1645994
Number of successful extensions: 1264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1234
Number of HSP's successfully gapped: 42
Length of query: 334
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 237
Effective length of database: 6,635,264
Effective search space: 1572557568
Effective search space used: 1572557568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)