RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019862
(334 letters)
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 490
Score = 191 bits (486), Expect = 2e-57
Identities = 45/267 (16%), Positives = 74/267 (27%), Gaps = 31/267 (11%)
Query: 69 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 128
+L +K+ RA + PG + + + D GP + K + + +
Sbjct: 10 FSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKD---LACLGFSADLV 66
Query: 129 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 188
+ H L DF M + GV H L
Sbjct: 67 MQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLR------------PGDGVIHSWL--N 112
Query: 189 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 248
P V G DSHT G+ F TG + L +P ++ G+M
Sbjct: 113 RMLLPDTVGTGGDSHTRFPIGIS---FPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQ 169
Query: 249 DYLLAKDLILQIIGEISVAGAT----------YKSMEFVGTTVERLSMEERMTLCNMVVE 298
+ +DL+ I G + + L +E+ L + E
Sbjct: 170 PGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAE 229
Query: 299 AGGKNGVVPA-DGTTFKYLEDKTSLPY 324
+ +YL L
Sbjct: 230 RSAAGCTIKLNKEPIIEYLNSNIVLLK 256
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos
taurus) [TaxId: 9913]}
Length = 527
Score = 139 bits (352), Expect = 4e-38
Identities = 65/253 (25%), Positives = 97/253 (38%), Gaps = 11/253 (4%)
Query: 69 MTLTEKIFSR----ASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWD 124
+TL+EKI + + + + D + D + F KV
Sbjct: 35 LTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS--SGLPKVAV 92
Query: 125 REKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIA 184
I DH I +++ +D E G P + I
Sbjct: 93 PSTIHC--DHLIEA-QLGGEKDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQII 149
Query: 185 LAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLD 244
L E + PG +L+GTDSHT G G G+G DA V+ LK P + L
Sbjct: 150 L--ENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLT 207
Query: 245 GEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNG 304
G + + KD+IL++ G ++V G T +E+ G V+ +S T+CNM E G
Sbjct: 208 GSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTS 267
Query: 305 VVPADGTTFKYLE 317
V P + KYL
Sbjct: 268 VFPYNHRMKKYLS 280
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein
1, N-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 629
Score = 126 bits (317), Expect = 7e-33
Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 14/218 (6%)
Query: 113 KKEFGENAKVWDREKIVIIPDHYI----FTSDERANRNVDI--------LRDFCMEQNIK 160
KK G+ K+ ++ DH I + +N D+
Sbjct: 104 KKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAF 163
Query: 161 YFYDIKDLGNFKANPDYKG-VCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGN 219
+ I G+ + + + Q+G+ + L+GTDSHT G G+G
Sbjct: 164 HNMRIIPPGSGIIHQVNLEYLARVVFDQDGYY-YPDSLVGTDSHTTMIDGLGILGWGVGG 222
Query: 220 TDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGT 279
+A V+ + + +P + + L G+ + + D++L I + G K +EF G
Sbjct: 223 IEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGP 282
Query: 280 TVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLE 317
V +LS+ +R T+ NM E G P D + YL
Sbjct: 283 GVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLV 320
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli
[TaxId: 562]}
Length = 620
Score = 27.2 bits (59), Expect = 3.4
Identities = 3/41 (7%), Positives = 15/41 (36%)
Query: 112 FKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRD 152
+ W+ + I+P+ + + +++++
Sbjct: 50 QPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKR 90
>d1ly2a1 g.18.1.1 (A:0-66) Complement receptor 2, cr2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 25.0 bits (54), Expect = 4.0
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 190 HCRPGEVLLGTDSHTCTAG 208
C L+G S C
Sbjct: 31 SCSGTFRLIGEKSLLCITK 49
>d3d31a1 b.40.6.3 (A:230-348) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 119
Score = 25.8 bits (56), Expect = 4.5
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 65 VKNAMTLTEKIFSRASEKPQLSPGDNVWVNVD 96
V + L I R++E+ +LSPG ++
Sbjct: 80 VDCGVPLNVLITRRSAEEMELSPGVQIYARFK 111
>d1hcca_ g.18.1.1 (A:) Factor H, 15th and 16th modules {Human (Homo
sapiens) [TaxId: 9606]}
Length = 59
Score = 24.1 bits (52), Expect = 5.5
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 190 HCRPGEVLLGTDSHTCTAG 208
C G + G C
Sbjct: 32 KCFEGFGIDGPAIAKCLGE 50
>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase
C-terminal domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 196
Score = 25.9 bits (56), Expect = 6.2
Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 14/130 (10%)
Query: 99 MTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQN 158
+H + S KK+ + V K++ + ++ R+
Sbjct: 61 WSHPILSQLSLDEAKKQITDTEDVL--TKVLGSSSKLMRPPYGAITDDI---RNSLDLSF 115
Query: 159 IKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIG 218
I + D D + + H G ++L D H+ T A + +
Sbjct: 116 IMWDVDSLDWKSKNEASILTEIQH-------QVANGSIVLMHDIHSPTVNALPRVIEYL- 167
Query: 219 NTDAGFVLGT 228
+ G+ T
Sbjct: 168 -KNQGYTFVT 176
>d1dzfa1 c.52.3.1 (A:5-143) Eukaryotic RPB5 N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 139
Score = 25.2 bits (55), Expect = 8.5
Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 108 SFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRD---FCMEQNIKYFYD 164
FK ++ ++ R+ + + ++E ++ D+ FC E ++
Sbjct: 34 PLEDFKAKYCDSMGRPQRKMMSFQANP----TEESISKFPDMGSLWVEFCDEPSVG---- 85
Query: 165 IKDLGNF 171
+K + F
Sbjct: 86 VKTMKTF 92
>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 182
Score = 25.3 bits (55), Expect = 8.8
Identities = 19/122 (15%), Positives = 34/122 (27%), Gaps = 23/122 (18%)
Query: 134 HYIFTSDER----ANRNVDILRDFCME-----QNIKYFYDIKDLGNFKA--------NPD 176
+ + A R + C + +IK F N+ NP
Sbjct: 62 KHTTLGERGALREAMRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNP- 120
Query: 177 YKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVP 236
C + C G L T+ + G QFA ++ + ++
Sbjct: 121 LGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFA-----SEVFKAMNIPQIRNPCL 175
Query: 237 PT 238
P+
Sbjct: 176 PS 177
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.398
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,248,252
Number of extensions: 59152
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 11
Length of query: 334
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,226,816
Effective search space: 304250368
Effective search space used: 304250368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)