Query 019863
Match_columns 334
No_of_seqs 120 out of 250
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13862 BCIP: p21-C-terminal 100.0 4.3E-63 9.3E-68 449.7 19.4 191 79-282 1-194 (194)
2 KOG3034 Isoamyl acetate-hydrol 100.0 1E-57 2.3E-62 430.0 21.3 295 1-331 1-306 (308)
3 PF02228 Gag_p19: Major core p 66.5 5.9 0.00013 31.9 2.8 33 90-122 38-74 (92)
4 PF06478 Corona_RPol_N: Corona 40.1 17 0.00037 36.1 1.7 42 86-127 149-191 (355)
5 PRK11593 folB bifunctional dih 22.5 2.7E+02 0.0058 23.0 5.9 33 94-126 52-89 (119)
6 PF15405 PH_5: Pleckstrin homo 20.8 48 0.001 28.7 1.0 16 230-245 21-36 (135)
7 COG3588 Fructose-1,6-bisphosph 20.5 53 0.0012 32.6 1.4 17 12-29 280-296 (332)
8 PF00274 Glycolytic: Fructose- 17.9 49 0.0011 33.4 0.5 16 12-28 278-293 (348)
9 cd04596 CBS_pair_DRTGG_assoc T 17.9 1.7E+02 0.0037 22.3 3.6 78 111-195 11-92 (108)
10 PF06597 Clostridium_P47: Clos 16.2 2.1E+02 0.0046 29.8 4.7 28 79-106 124-153 (456)
No 1
>PF13862 BCIP: p21-C-terminal region-binding protein
Probab=100.00 E-value=4.3e-63 Score=449.67 Aligned_cols=191 Identities=47% Similarity=0.861 Sum_probs=169.5
Q ss_pred CeEEEEEeecCCCCCCHHHHHHHHHHhhcccCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeecccccCchhH
Q 019863 79 GVVQADFVFFDPKPDDFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNLRRYKDHKCI 158 (334)
Q Consensus 79 e~V~VDFeffdp~e~DfhgIK~LL~qlf~~~~~dls~LaDlIl~Q~~vGTvIK~~~ded~dvyg~~SvLNL~~~k~~~~i 158 (334)
|+|||||+||||+|.||||||+||+|||++++||+++|||+|++|++||||||++|++|++||||+|||||++|++++|+
T Consensus 1 e~V~vdFe~~dp~~~D~hgIk~LL~ql~~~~~~dl~~LadlIi~Q~~vGsvVK~~d~~e~dvyg~~Svlnl~~~k~~~~i 80 (194)
T PF13862_consen 1 EEVNVDFEFFDPNEIDFHGIKNLLQQLFLDAEIDLSELADLIIEQNNVGSVVKQADGDEDDVYGFLSVLNLTQHKDHPCI 80 (194)
T ss_pred CeEEEEEEeeCCChhhHHHHHHHHHHhccccCcCHHHHHHHHHcCCCCceEEEecCCCCCcceEEEEEEEcccccccHHH
Confidence 57999999999999999999999999999999999999999999999999999954567899999999999999999999
Q ss_pred HHHHHHHHhhcc---chhhHHHHHHHhcCCCCceEEEEecccccCCccchHHHHHHHHHHHHHhhhCCChhhhcCcccce
Q 019863 159 KELKEFLLKVCL---EKDVIKDLRLFMGEQANDVGLLVSQRVVNLPPQLLPPLYDALFDEVSWATEDEPTEELRNFFCFK 235 (334)
Q Consensus 159 ~~L~~yLlk~~~---~~~~~~~L~~lL~~~~~~vGLlinER~iN~P~ql~ppL~~~L~eEI~~A~e~~~~ee~r~~f~F~ 235 (334)
++|++||+++|+ .+++.+.|+++|++++++|||||||||+|||+||+||||++|++||+||.+++ ++|+|+
T Consensus 81 ~~l~~yl~~k~~~~~~~~~~~~l~~~l~~~~~~vGLlinER~iN~P~ql~ppl~~~L~~ei~~a~~~~------~~~~f~ 154 (194)
T PF13862_consen 81 KQLRKYLLSKCSKSADKEVKKKLEKLLSSSNKNVGLLINERFINIPPQLAPPLYKMLLEEIEWAQEDE------KPFKFT 154 (194)
T ss_pred HHHHHHHHHHhhhccChhHHHHHHHHHhccCCCeEEEEehhhhcCCHHHHHHHHHHHHHHHHHHHhcC------CCCCCe
Confidence 999999999886 57788999999998889999999999999999999999999999999999875 679999
Q ss_pred EEEEEEeEEeeccccchhhhhhhhhccCCCCCCCcccccCchhhHHh
Q 019863 236 CYLLVSKIYKLKHKNANQKNKRNLKRRSASDSGDEIVYIKPEDEIFH 282 (334)
Q Consensus 236 hyL~isK~y~~~~~~~~~k~~k~kKk~~~~~~~~ei~y~~pEDEi~~ 282 (334)
|||+|||+|+.... ++++++++ ....++++|+|||||+|+
T Consensus 155 ~yL~isk~y~~~~~--~~~~~~~~-----~~~~~~~~~~~~Ede~~~ 194 (194)
T PF13862_consen 155 HYLIISKVYKEKKK--KKRKKKKK-----KKKKDEIIYFNPEDEIFH 194 (194)
T ss_pred EEEEEEEEEeeccc--cccccccc-----cCCcccceeCChhhhhcC
Confidence 99999999985222 11111111 123478999999999985
No 2
>KOG3034 consensus Isoamyl acetate-hydrolyzing esterase and related enzymes [General function prediction only]
Probab=100.00 E-value=1e-57 Score=429.96 Aligned_cols=295 Identities=31% Similarity=0.509 Sum_probs=233.1
Q ss_pred CCCCcccccCCCCCCccccchhHHHHHHHhhhcccccccccccCCCCCCCCccccccccccccCCCCCCCCcccCCCCCe
Q 019863 1 MPRRPTRRRRMLNPQPLTFSPFARSVAQIASIHVDRCQTHKSKDQKGSPLNSKDKGIWKHTLEGKNDLSESSEEEGSGGV 80 (334)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~e~ 80 (334)
||+|++||++.+++.++.++||-|..+. ++........+ .++. .++ .++++.++++
T Consensus 1 m~~~~~~~~~~s~~k~~~l~~~~r~~~e-~~~v~~~~edd---------------------dD~d-~~~-eeek~~e~e~ 56 (308)
T KOG3034|consen 1 MASRSKRRAVESKYKQLPLPPFQRDEEE-EEDVEDESEDD---------------------DDED-KEN-EEEKEVEDEE 56 (308)
T ss_pred CCCcccchhhhhcCCCCCCcchhccccc-cccccccccCc---------------------cccc-ccc-hhhhccccce
Confidence 8999999999999999999999998875 22111111000 0111 011 2223335679
Q ss_pred EEEEEeecCCCCCCHHHHHHHHHHhhcccCCChhhHHHHHHcCCCcceEEEecCCC-------CCCceEEEEeeeccccc
Q 019863 81 VQADFVFFDPKPDDFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGTVVKIEGDD-------DNTPFSIVTALNLRRYK 153 (334)
Q Consensus 81 V~VDFeffdp~e~DfhgIK~LL~qlf~~~~~dls~LaDlIl~Q~~vGTvIK~~~de-------d~dvyg~~SvLNL~~~k 153 (334)
||+|||||+|+|.||||||+||+|+|.+++||+++|||+||+|+.+|+|||+++++ ++|+||++|+||++..+
T Consensus 57 vnidFE~~~p~d~D~~giknLL~Qlfl~~~Vnla~laDlii~q~~~gsvikq~~~~e~~~d~m~~D~~~~~s~lnl~~~~ 136 (308)
T KOG3034|consen 57 VNIDFEAYSPSDVDADGIKNLLQQLFLRAHVNLAALADLIIAQNHIGSVIKQDDDSETENDDMDEDPFGFLSFLNLTARK 136 (308)
T ss_pred EeccccccCCCCcchHHHHHHHHHHhccccccHHHhHHHHhhcccccceeEecccccccccccccCCceEEEEeehhhhc
Confidence 99999999999999999999999999999999999999999999999999999754 26889999999999999
Q ss_pred CchhHHHHHHHHHhhcc---chhhHHHHHHHhcCCCCceEEEEecccccCCccchHHHHHHHHHHHHHhhhCCChhhhcC
Q 019863 154 DHKCIKELKEFLLKVCL---EKDVIKDLRLFMGEQANDVGLLVSQRVVNLPPQLLPPLYDALFDEVSWATEDEPTEELRN 230 (334)
Q Consensus 154 ~~~~i~~L~~yLlk~~~---~~~~~~~L~~lL~~~~~~vGLlinER~iN~P~ql~ppL~~~L~eEI~~A~e~~~~ee~r~ 230 (334)
+.+||++|.+|+++.|. ++.+.++|+.+|.+++++|||||||||||||+||+||||++|++||+||..++ +
T Consensus 137 ~~~~ikqL~~yvL~r~~k~~~k~v~~~lk~ll~s~~k~vgLlvsERliN~P~qv~pPly~~l~eEla~A~~~~------k 210 (308)
T KOG3034|consen 137 DTKCIKQLQEYVLRRCKKNAEKEVVEQLKLLLDSGTKPVGLLVSERLINMPPQVVPPLYQSLQEELAGAHREN------K 210 (308)
T ss_pred cchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhcCCCceeEEeehhhhcCCchhhhHHHHHHHHHHHHHhccC------C
Confidence 99999999999999887 57799999999999999999999999999999999999999999999998553 5
Q ss_pred cccceEEEEEEeEEeeccccchhhhhhhhhcc-CCCCCCCcccccCchhhHHhhcceeEEEEecccccccccccccccee
Q 019863 231 FFCFKCYLLVSKIYKLKHKNANQKNKRNLKRR-SASDSGDEIVYIKPEDEIFHKLSLWSFSFPMQTQQVETQELKNYRLM 309 (334)
Q Consensus 231 ~f~F~hyL~isK~y~~~~~~~~~k~~k~kKk~-~~~~~~~ei~y~~pEDEi~~k~A~~sf~y~~~~~~~~~~e~~~~~~~ 309 (334)
+|.|.||+++.+.|....+.....++..+|++ ...-..+++.|+|+||+++.-.+...+.|... +.+..+.+ +
T Consensus 211 p~~f~~~lll~~~y~~eakk~~~s~~~~kk~~~a~~~~~aE~~ff~eed~~~e~~~~i~~~~~~~---~d~~~~~~---~ 284 (308)
T KOG3034|consen 211 PYDFCYFLLLVKTYFVEAKKGKSSEKPSKKKKAALLVANAEVEFFYEEDRFFELKSLIEEDTDAG---VDPGVIFH---F 284 (308)
T ss_pred ccceEEEEEEEEEeeehhccCCCcccccccHHHHhhhccchhhccchHhhhhhhhhccccccccC---CCCccccc---c
Confidence 69999999999999853322111111111111 12234788999999999555556666666554 22223333 6
Q ss_pred eEEEEEeCCCHHHHHHHHHhhh
Q 019863 310 GLVMAVEAAKIPTFRQELQSLI 331 (334)
Q Consensus 310 g~vmli~a~k~~~~~~~l~~~~ 331 (334)
|.+||++.++|.+++.+++.-+
T Consensus 285 r~l~il~~~~~~~~i~kl~~~i 306 (308)
T KOG3034|consen 285 RRLLILDDEKFDALIDKLQDEI 306 (308)
T ss_pred ceEEEeeccchHHHHHHHHhhh
Confidence 7899999999999999998654
No 3
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=66.47 E-value=5.9 Score=31.87 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHHHhhcc----cCCChhhHHHHHHc
Q 019863 90 PKPDDFHGVKILLQTYLDD----AQWDLSGFVDLILA 122 (334)
Q Consensus 90 p~e~DfhgIK~LL~qlf~~----~~~dls~LaDlIl~ 122 (334)
|++-|||-+|++|.-.+.. +.||.|-||.+|-.
T Consensus 38 PS~~DF~qLr~flk~alkTpvwl~pi~yslla~lipk 74 (92)
T PF02228_consen 38 PSSFDFHQLRNFLKLALKTPVWLNPINYSLLASLIPK 74 (92)
T ss_dssp -STTTHHHHHHHHHHHHT-TTSTTTT-TTTHHHHS-S
T ss_pred CCcccHHHHHHHHHHHHcCCeeeccccHHHHHHHccC
Confidence 5567999999999877754 68999999998744
No 4
>PF06478 Corona_RPol_N: Coronavirus RPol N-terminus; InterPro: IPR009469 This domain represents the N-terminal region of the coronavirus RNA-directed RNA Polymerase.; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0005524 ATP binding, 0006351 transcription, DNA-dependent
Probab=40.14 E-value=17 Score=36.11 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=39.0
Q ss_pred eecCCCCC-CHHHHHHHHHHhhcccCCChhhHHHHHHcCCCcc
Q 019863 86 VFFDPKPD-DFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVG 127 (334)
Q Consensus 86 effdp~e~-DfhgIK~LL~qlf~~~~~dls~LaDlIl~Q~~vG 127 (334)
.||||-|+ |+|.+=+-|...+.++-++.-+++|.+++++-||
T Consensus 149 ~WyDpVEN~di~~vy~kLG~iv~~a~L~~v~f~d~mv~~G~VG 191 (355)
T PF06478_consen 149 DWYDPVENPDIHRVYAKLGPIVNRAMLKAVKFCDAMVEKGLVG 191 (355)
T ss_pred cCcCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeE
Confidence 58999998 9999999999999999999999999999988887
No 5
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=22.46 E-value=2.7e+02 Score=23.05 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHhhcccCCCh-----hhHHHHHHcCCCc
Q 019863 94 DFHGVKILLQTYLDDAQWDL-----SGFVDLILAQTTV 126 (334)
Q Consensus 94 DfhgIK~LL~qlf~~~~~dl-----s~LaDlIl~Q~~v 126 (334)
||..|-..+..+.....|+| .++++.|+.+-.+
T Consensus 52 dY~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~~~ 89 (119)
T PRK11593 52 SYADIAETVISHVEGARFALVERVAEEVAELLLARFNS 89 (119)
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhCCC
Confidence 89999999999998878885 4577888777543
No 6
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=20.75 E-value=48 Score=28.70 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=13.3
Q ss_pred CcccceEEEEEEeEEe
Q 019863 230 NFFCFKCYLLVSKIYK 245 (334)
Q Consensus 230 ~~f~F~hyL~isK~y~ 245 (334)
..|=|||||+++|.-.
T Consensus 21 ~~~LFDh~Lll~K~k~ 36 (135)
T PF15405_consen 21 HVYLFDHYLLLTKPKK 36 (135)
T ss_dssp EEEEESSEEEEEEEEE
T ss_pred EEEeeccEEEEEEEEe
Confidence 4578999999999744
No 7
>COG3588 Fructose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=20.49 E-value=53 Score=32.57 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=14.7
Q ss_pred CCCCccccchhHHHHHHH
Q 019863 12 LNPQPLTFSPFARSVAQI 29 (334)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (334)
..+|+|+|| |+|+|.+=
T Consensus 280 ~~pw~L~fS-f~RAL~~~ 296 (332)
T COG3588 280 PLPWSLIFS-FSRALQEG 296 (332)
T ss_pred CCCceeeee-HHHHhhhh
Confidence 568999998 99999873
No 8
>PF00274 Glycolytic: Fructose-bisphosphate aldolase class-I; InterPro: IPR000741 Fructose-bisphosphate aldolase (4.1.2.13 from EC) [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms: class I enzymes [] do not require a metal ion, and are characterised by the formation of a Schiff base intermediate between a highly conserved active site lysine and a substrate carbonyl group, while the class II enzymes require an active-site divalent metal ion. This entry represents the class I enzymes. In vertebrates, three forms of this enzyme are found: aldolase A is expressed in muscle, aldolase B in liver, kidney, stomach and intestine, and aldolase C in brain, heart and ovary. The different isozymes have different catalytic functions: aldolases A and C are mainly involved in glycolysis, while aldolase B is involved in both glycolysis and gluconeogenesis. Defects in aldolase B result in hereditary fructose intolerance.; GO: 0004332 fructose-bisphosphate aldolase activity, 0006096 glycolysis; PDB: 1EX5_B 6ALD_D 2QUU_B 3DFN_B 1ADO_B 3DFO_A 1ZAL_A 1J4E_C 3DFP_A 1ZAJ_B ....
Probab=17.92 E-value=49 Score=33.39 Aligned_cols=16 Identities=44% Similarity=0.866 Sum_probs=12.9
Q ss_pred CCCCccccchhHHHHHH
Q 019863 12 LNPQPLTFSPFARSVAQ 28 (334)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ 28 (334)
.+||||+|| |.|+|.+
T Consensus 278 ~~PW~lsFS-fgRALq~ 293 (348)
T PF00274_consen 278 NKPWPLSFS-FGRALQE 293 (348)
T ss_dssp --SSEEEEE-ESHHHHH
T ss_pred CCChheeEE-echhhhH
Confidence 679999998 9999975
No 9
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=17.88 E-value=1.7e+02 Score=22.31 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=39.3
Q ss_pred CChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeecccccCchhHHHHHHHHHh---hcc-chhhHHHHHHHhcCCC
Q 019863 111 WDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNLRRYKDHKCIKELKEFLLK---VCL-EKDVIKDLRLFMGEQA 186 (334)
Q Consensus 111 ~dls~LaDlIl~Q~~vGTvIK~~~ded~dvyg~~SvLNL~~~k~~~~i~~L~~yLlk---~~~-~~~~~~~L~~lL~~~~ 186 (334)
..++++.+.+. +...+.+.-++ +++.+.|+++.-+|....... .+.+++.. .+. +..+.+.++.+... .
T Consensus 11 ~~~~~a~~~~~-~~~~~~~~V~d--~~~~~~G~v~~~~l~~~~~~~---~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~ 83 (108)
T cd04596 11 DTVKDWHELNK-ETGHSRFPVVD--EKNKVVGIVTSKDVAGKDPDT---TIEKVMTKNPITVNPKTSVASVAHMMIWE-G 83 (108)
T ss_pred CCHHHHHHHHH-HcCCCceeEEC--CCCeEEEEecHHHHhcccccc---cHHHHhcCCCeEECCCCCHHHHHHHHHHc-C
Confidence 34556666664 44556665454 345699999876654322222 23344432 222 23345555555432 3
Q ss_pred CceEEEEec
Q 019863 187 NDVGLLVSQ 195 (334)
Q Consensus 187 ~~vGLlinE 195 (334)
.....+++|
T Consensus 84 ~~~~~Vv~~ 92 (108)
T cd04596 84 IEMLPVVDD 92 (108)
T ss_pred CCeeeEEcC
Confidence 345556654
No 10
>PF06597 Clostridium_P47: Clostridium P-47 protein; InterPro: IPR010567 This family consists of several P-47 proteins from various Clostridium species [] as well as related sequences from other bacteria. The function of this family is unknown.
Probab=16.17 E-value=2.1e+02 Score=29.77 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=16.3
Q ss_pred CeEEE--EEeecCCCCCCHHHHHHHHHHhh
Q 019863 79 GVVQA--DFVFFDPKPDDFHGVKILLQTYL 106 (334)
Q Consensus 79 e~V~V--DFeffdp~e~DfhgIK~LL~qlf 106 (334)
-.|.+ .+.|-+|...+-..++.+|.++|
T Consensus 124 ~vi~i~~~~~~~~~~~~~~~~~~~~~~~ll 153 (456)
T PF06597_consen 124 AVIIILEGINFTDPDGDNDSIAKALFSALL 153 (456)
T ss_pred ceEEeeccccccCCccchhHHHHHHHHHHH
Confidence 35555 57777877755555555444443
Done!