Query 019863
Match_columns 334
No_of_seqs 120 out of 250
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 08:13:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l9b_B MRNA 3'-END-processing 50.8 9.8 0.00033 27.1 2.5 35 94-128 10-46 (53)
2 3i3g_A N-acetyltransferase; ma 50.6 56 0.0019 25.1 7.4 63 84-148 20-85 (161)
3 1jvr_A HTLV-II MA, MA, human T 49.6 12 0.0004 31.2 3.1 33 90-122 39-75 (137)
4 3t90_A Glucose-6-phosphate ace 43.8 21 0.00072 26.9 3.7 64 85-148 5-72 (149)
5 2vez_A Putative glucosamine 6- 25.1 2.3E+02 0.0078 22.5 7.4 63 85-148 48-114 (190)
6 1s6c_B Potassium voltage-gated 22.2 29 0.001 22.0 0.9 10 18-27 7-16 (30)
7 1cjw_A Protein (serotonin N-ac 21.8 1.4E+02 0.0047 22.4 5.1 61 85-149 6-70 (166)
8 4fd4_A Arylalkylamine N-acetyl 21.4 1.2E+02 0.0042 24.2 5.0 65 85-149 7-81 (217)
9 1pfj_A TFIIH basal transcripti 21.2 72 0.0025 25.8 3.3 27 81-107 73-101 (108)
10 4e0a_A BH1408 protein; structu 18.5 2E+02 0.0068 21.4 5.4 60 87-149 3-75 (164)
No 1
>2l9b_B MRNA 3'-END-processing protein RNA14; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=50.79 E-value=9.8 Score=27.15 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=27.2
Q ss_pred CHHHHHHHH--HHhhcccCCChhhHHHHHHcCCCcce
Q 019863 94 DFHGVKILL--QTYLDDAQWDLSGFVDLILAQTTVGT 128 (334)
Q Consensus 94 DfhgIK~LL--~qlf~~~~~dls~LaDlIl~Q~~vGT 128 (334)
|--.+-..| +|||....+|-+.|++.+.+|-++-+
T Consensus 10 eI~dLL~vLPKRQYFK~~~ld~~klv~~L~dqV~ip~ 46 (53)
T 2l9b_B 10 EVLDLLSVIPKRQYFNTNLLDAQKLVNFLNDQVEIPT 46 (53)
T ss_dssp HHHHHHHHSBCGGGGCSSCCCHHHHHHHHHHTCCCC-
T ss_pred HHHHHHHHcchHhhhcccccCHHHHHHHHHhccccCC
Confidence 333344444 89999999999999999999988654
No 2
>3i3g_A N-acetyltransferase; malaria, structural genomics, structural genomics consortium, SGC,; 1.86A {Trypanosoma brucei} PDB: 3fb3_A
Probab=50.57 E-value=56 Score=25.05 Aligned_cols=63 Identities=10% Similarity=0.001 Sum_probs=40.9
Q ss_pred EEeecCCCCCCHHHHHHHHHHhhcccCCChhhHHHH---HHcCCCcceEEEecCCCCCCceEEEEeee
Q 019863 84 DFVFFDPKPDDFHGVKILLQTYLDDAQWDLSGFVDL---ILAQTTVGTVVKIEGDDDNTPFSIVTALN 148 (334)
Q Consensus 84 DFeffdp~e~DfhgIK~LL~qlf~~~~~dls~LaDl---Il~Q~~vGTvIK~~~ded~dvyg~~SvLN 148 (334)
++.+....+.|+..|..|++.++....++...+.+. +..+..-..++-.. +++.+.|++.+..
T Consensus 20 ~~~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~vG~~~~~~ 85 (161)
T 3i3g_A 20 DLELRVLEESDLSSHLELLGHLTEAPPLSGVELANIADMRRRAGIVTKVFCHQ--PTGRIVGSASLMI 85 (161)
T ss_dssp CEEEEECCGGGHHHHHHHHTTTSCCCCCCHHHHHHHHHHHHHTTCEEEEEEET--TTTEEEEEEEEEE
T ss_pred cEEEEECcHhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHhhcCCceEEEEEE--cCCCeEEEEEEEe
Confidence 456677788999999999999887767776666663 33333223333332 2346788777653
No 3
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=49.57 E-value=12 Score=31.16 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHhhcc----cCCChhhHHHHHHc
Q 019863 90 PKPDDFHGVKILLQTYLDD----AQWDLSGFVDLILA 122 (334)
Q Consensus 90 p~e~DfhgIK~LL~qlf~~----~~~dls~LaDlIl~ 122 (334)
|++-|||-++++|.--+.. +.||.|=||.||=+
T Consensus 39 PS~fDFhqLr~fLklAl~TPvWlnPI~YSlLA~LiPk 75 (137)
T 1jvr_A 39 PSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPK 75 (137)
T ss_dssp CSTTTHHHHHHHHHHHHTCTTSTTTTCTTTHHHHSCS
T ss_pred CCcccHHHHHHHHHHHhcCcccccchhHHHHHhhccC
Confidence 5566999999999876643 67899888888744
No 4
>3t90_A Glucose-6-phosphate acetyltransferase 1; GNAT fold, glcnac biosynthesis, alpha/beta protein; HET: EPE; 1.50A {Arabidopsis thaliana}
Probab=43.79 E-value=21 Score=26.93 Aligned_cols=64 Identities=14% Similarity=0.019 Sum_probs=42.4
Q ss_pred EeecCCCCCCHH-HHHHHHHHhhcccCCChhhHHH---HHHcCCCcceEEEecCCCCCCceEEEEeee
Q 019863 85 FVFFDPKPDDFH-GVKILLQTYLDDAQWDLSGFVD---LILAQTTVGTVVKIEGDDDNTPFSIVTALN 148 (334)
Q Consensus 85 Feffdp~e~Dfh-gIK~LL~qlf~~~~~dls~LaD---lIl~Q~~vGTvIK~~~ded~dvyg~~SvLN 148 (334)
+.+....+.|.. .|..|+.+++....++..++.. .+...+....++-..+.+++.+.|++.+..
T Consensus 5 ~~ir~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~ 72 (149)
T 3t90_A 5 FKIRKLEISDKRKGFIELLGQLTVTGSVTDEEFDRRFEEIRSYGDDHVICVIEEETSGKIAATGSVMI 72 (149)
T ss_dssp EEEEECCGGGGGTTHHHHHTTTSCCCCCCHHHHHHHHHHHHTTGGGEEEEEEEETTTTEEEEEEEEEE
T ss_pred EEEEecCchhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcEEEEEEEEe
Confidence 455667788999 9999999987766788777777 455555333333333211356889888754
No 5
>2vez_A Putative glucosamine 6-phosphate acetyltransferase; acyltransferase; HET: ACO G6P; 1.45A {Aspergillus fumigatus} PDB: 2vxk_A*
Probab=25.13 E-value=2.3e+02 Score=22.47 Aligned_cols=63 Identities=5% Similarity=-0.030 Sum_probs=39.0
Q ss_pred EeecCCCCCCHHH-HHHHHHHhhcccCCChhhHHHHH---HcCCCcceEEEecCCCCCCceEEEEeee
Q 019863 85 FVFFDPKPDDFHG-VKILLQTYLDDAQWDLSGFVDLI---LAQTTVGTVVKIEGDDDNTPFSIVTALN 148 (334)
Q Consensus 85 Feffdp~e~Dfhg-IK~LL~qlf~~~~~dls~LaDlI---l~Q~~vGTvIK~~~ded~dvyg~~SvLN 148 (334)
+.+....+.|+.. |..|+++.+....++...+.+.+ .....-+.++-..+ +++.+.|++.+..
T Consensus 48 ~~iR~~~~~D~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~g~ivG~~~~~~ 114 (190)
T 2vez_A 48 YTIRPLCRSDYKRGYLDVLRVLTTVGDINEEQWNSRYEWIRARSDEYYLLVVCD-GEGRIVGTGSLVV 114 (190)
T ss_dssp CEEEECCGGGGGGTHHHHHTTTSCCCCCCHHHHHHHHHHHHTTTTTEEEEEEEC-TTSCEEEEEEEEE
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCCcEEEEEEc-CCCcEEEEEEEEe
Confidence 3455667789999 99999888765566666665543 33333334433332 2356889888654
No 6
>1s6c_B Potassium voltage-gated channel subfamily D membe; EF-hand, transport protein; 2.00A {Rattus norvegicus}
Probab=22.16 E-value=29 Score=21.99 Aligned_cols=10 Identities=50% Similarity=0.913 Sum_probs=8.8
Q ss_pred ccchhHHHHH
Q 019863 18 TFSPFARSVA 27 (334)
Q Consensus 18 ~~~~~~~~~~ 27 (334)
+||||+|..+
T Consensus 7 ~w~~far~a~ 16 (30)
T 1s6c_B 7 AWLPFARAAA 16 (30)
T ss_dssp TTHHHHHHHH
T ss_pred hhcccchhhc
Confidence 6899999987
No 7
>1cjw_A Protein (serotonin N-acetyltransferase); HET: COT; 1.80A {Ovis aries} SCOP: d.108.1.1 PDB: 1b6b_A
Probab=21.78 E-value=1.4e+02 Score=22.37 Aligned_cols=61 Identities=10% Similarity=0.052 Sum_probs=41.0
Q ss_pred EeecCCCCCCHHHHHHHHHHhhcc----cCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeec
Q 019863 85 FVFFDPKPDDFHGVKILLQTYLDD----AQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNL 149 (334)
Q Consensus 85 Feffdp~e~DfhgIK~LL~qlf~~----~~~dls~LaDlIl~Q~~vGTvIK~~~ded~dvyg~~SvLNL 149 (334)
+.+....+.|+..|..|....+.. ..++...+.+.+...+.. ..|-.+ ++.+.|++.+...
T Consensus 6 ~~ir~~~~~D~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~~~ivG~~~~~~~ 70 (166)
T 1cjw_A 6 NEFRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLTLCPEL-SLGWFV---EGRLVAFIIGSLW 70 (166)
T ss_dssp SEEECCCGGGHHHHHHHHHHHTHHHHSCCSCCHHHHHHHHHHCGGG-EEEEEE---TTEEEEEEEEEEE
T ss_pred eeeecCCHHHHHHHHHHHHHhCCCCcccCccCHHHHHHHHhcCCCc-EEEEEE---CCeEEEEEEeeee
Confidence 345677788999999999887643 367778888887654333 333332 2468888877644
No 8
>4fd4_A Arylalkylamine N-acetyltransferase like 5B; GNAT; 1.95A {Aedes aegypti}
Probab=21.40 E-value=1.2e+02 Score=24.24 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=38.3
Q ss_pred EeecCCCCCCHHHHHHHHHHhhcc-cC---------CChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeec
Q 019863 85 FVFFDPKPDDFHGVKILLQTYLDD-AQ---------WDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNL 149 (334)
Q Consensus 85 Feffdp~e~DfhgIK~LL~qlf~~-~~---------~dls~LaDlIl~Q~~vGTvIK~~~ded~dvyg~~SvLNL 149 (334)
+.+....+.|+..|..|+.+.|.. .. ....++...+.....-|.++-..+.+++.+.|++.+...
T Consensus 7 i~iR~~~~~D~~~i~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~g~ivG~~~~~~~ 81 (217)
T 4fd4_A 7 IVLRVARLDELEQVREILHRIYYPEEGITISYVHGKSHTLDDERFSLSFVEQGTVVVAEDSAAKKFIGVSIAGPI 81 (217)
T ss_dssp EEEEECCGGGHHHHHHHHHHHTTTTCHHHHHBTTCSSCCHHHHHHHHTTTTTTCEEEEEETTTTEEEEEEEEEEE
T ss_pred eEEEEcCHHHHHHHHHHHHHhcCCccchhhhccCCCccHHHHHHHHHHHHHCCCeEEEEECCCCCEEEEEEeecc
Confidence 456677889999999999887632 11 112334444444433344433332234579999876554
No 9
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=21.19 E-value=72 Score=25.81 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.0
Q ss_pred EEEEEeecCCCC--CCHHHHHHHHHHhhc
Q 019863 81 VQADFVFFDPKP--DDFHGVKILLQTYLD 107 (334)
Q Consensus 81 V~VDFeffdp~e--~DfhgIK~LL~qlf~ 107 (334)
-+.-|-|.+|.+ .|.++||.+|++++.
T Consensus 73 ~~~~F~Ftn~~~a~~erd~VKd~L~~~l~ 101 (108)
T 1pfj_A 73 DTTNFHFSNESTAVKERDAVKDLLQQLLP 101 (108)
T ss_dssp CEEEEECCCSSCTTHHHHHHHHHHHHHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHHHHH
Confidence 457999999975 399999999999874
No 10
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Probab=18.55 E-value=2e+02 Score=21.43 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=36.9
Q ss_pred ecCCCCCCHHHHHHHHHHhhc-------------ccCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeec
Q 019863 87 FFDPKPDDFHGVKILLQTYLD-------------DAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNL 149 (334)
Q Consensus 87 ffdp~e~DfhgIK~LL~qlf~-------------~~~~dls~LaDlIl~Q~~vGTvIK~~~ded~dvyg~~SvLNL 149 (334)
+....+.|...|..|+...+. ...+....+...+-......-|+..+ ++.+.|++.+...
T Consensus 3 ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~g~~vG~~~~~~~ 75 (164)
T 4e0a_A 3 IREATVQDYEEVARLHTQVHEAHVKERGDIFRSNEPTLNPSRFQAAVQGEKSTVLVFVDE---REKIGAYSVIHLV 75 (164)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHHHHHCTTTBCCCSSSSCHHHHHHHHHCSSEEEEEEEEE---TTEEEEEEEEEEE
T ss_pred EEEcCccCHHHHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHhcCCceEEEEEECC---CCcEEEEEEEEec
Confidence 445677899999999988652 23455666777765543322333222 1258888877544
Done!