Query 019863
Match_columns 334
No_of_seqs 120 out of 250
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 08:14:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019863.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019863hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jvra_ a.61.1.2 (A:) HTLV-II 61.7 2.6 0.00019 33.4 3.1 32 90-121 39-74 (137)
2 d1yvoa1 d.108.1.1 (A:4-172) Hy 24.0 27 0.002 26.2 3.4 61 88-150 3-72 (169)
3 d1vhsa_ d.108.1.1 (A:) Putativ 23.1 91 0.0066 22.8 6.5 62 87-149 4-72 (165)
4 d1yr0a1 d.108.1.1 (A:4-166) Ph 22.7 55 0.004 24.0 5.0 60 88-150 5-73 (163)
5 d1s3za_ d.108.1.1 (A:) Aminogl 19.1 47 0.0034 23.8 3.8 58 86-147 4-63 (147)
6 d2ozga2 d.108.1.10 (A:8-290) P 15.7 1.8E+02 0.013 23.5 7.2 34 85-118 2-35 (283)
7 d2rnrb1 b.55.1.9 (B:1-108) TFI 14.4 37 0.0027 25.4 2.0 27 82-108 74-102 (108)
8 d1qsma_ d.108.1.1 (A:) Histone 13.2 1.8E+02 0.013 20.4 5.9 59 87-146 5-69 (150)
9 d1mk4a_ d.108.1.1 (A:) Hypothe 12.4 92 0.0067 22.8 4.0 21 88-108 5-25 (157)
10 d1i12a_ d.108.1.1 (A:) Glucosa 12.3 2.3E+02 0.017 19.8 7.2 24 85-108 5-28 (157)
No 1
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=61.74 E-value=2.6 Score=33.42 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHhhcc----cCCChhhHHHHHH
Q 019863 90 PKPDDFHGVKILLQTYLDD----AQWDLSGFVDLIL 121 (334)
Q Consensus 90 p~e~DfhgIK~LL~qlf~~----~~~dls~LaDlIl 121 (334)
|++-|||-+|++|.-.+.. +.||.|-||.+|=
T Consensus 39 PS~~DF~qLr~flklalkTpvwl~Pi~ySlla~liP 74 (137)
T d1jvra_ 39 PSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIP 74 (137)
T ss_dssp CSTTTHHHHHHHHHHHHTCTTSTTTTCTTTHHHHSC
T ss_pred CCcccHHHHHHHHHHHHhCcccccccccchhhccCC
Confidence 5567999999999887753 6899999888763
No 2
>d1yvoa1 d.108.1.1 (A:4-172) Hypothetical protein PA4866 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.99 E-value=27 Score=26.18 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=37.8
Q ss_pred cCCCCCCHHHHHHHHHHhh-------cccCCChhhHHHHHHcCCCc--ceEEEecCCCCCCceEEEEeeecc
Q 019863 88 FDPKPDDFHGVKILLQTYL-------DDAQWDLSGFVDLILAQTTV--GTVVKIEGDDDNTPFSIVTALNLR 150 (334)
Q Consensus 88 fdp~e~DfhgIK~LL~qlf-------~~~~~dls~LaDlIl~Q~~v--GTvIK~~~ded~dvyg~~SvLNL~ 150 (334)
+...+.|..+|..+++++. +....+..++...+..+..- .-+|-.+ .++.+.|++++-...
T Consensus 3 R~a~~~D~~~i~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~vG~~~~~~~~ 72 (169)
T d1yvoa1 3 RDAGVADLPGILAIYNDAVGNTTAIWNETPVDLANRQAWFDTRARQGYPILVASD--AAGEVLGYASYGDWR 72 (169)
T ss_dssp EECCGGGHHHHHHHHHHHHHHCSSSSCCSCCCHHHHHHHHHHHHHHTCCEEEEEC--TTCCEEEEEEEEESS
T ss_pred ccCcHHHHHHHHHHHHHHHhhcceecccCCCCHHHHHHHHHhhhccCCceEEEEe--cCCCEEEeecccccc
Confidence 3456789999999987754 23455667777766554332 2333333 345689998765443
No 3
>d1vhsa_ d.108.1.1 (A:) Putative phosphinothricin acetyltransferase YwnH {Bacillus subtilis [TaxId: 1423]}
Probab=23.08 E-value=91 Score=22.83 Aligned_cols=62 Identities=6% Similarity=0.059 Sum_probs=41.8
Q ss_pred ecCCCCCCHHHHHHHHHHhhc-------ccCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeec
Q 019863 87 FFDPKPDDFHGVKILLQTYLD-------DAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNL 149 (334)
Q Consensus 87 ffdp~e~DfhgIK~LL~qlf~-------~~~~dls~LaDlIl~Q~~vGTvIK~~~ded~dvyg~~SvLNL 149 (334)
++...++|...|..|..++.. ....+..++.+.+.....-+...-+.. +++.+.|++++-+.
T Consensus 4 iR~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~ivG~~~~~~~ 72 (165)
T d1vhsa_ 4 LRLAEHRDLEAVVAIYNSTIASRMVTADTEPVTPEDRMEWFSGHTESRPLYVAED-ENGNVAAWISFETF 72 (165)
T ss_dssp EEECCGGGHHHHHHHHHHHHTTTSSCSCSSCCCGGGGHHHHHTCCSSSCEEEEEC-TTSCEEEEEEEEES
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhccccCCeEEEEe-cCCceEeeeeeeec
Confidence 455677899999999877542 235667778888777666555554442 44578998876543
No 4
>d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase {Agrobacterium tumefaciens [TaxId: 358]}
Probab=22.68 E-value=55 Score=24.02 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=36.7
Q ss_pred cCCCCCCHHHHHHHHHHhh-------cccCCChhhHHHHHHcCCC--cceEEEecCCCCCCceEEEEeeecc
Q 019863 88 FDPKPDDFHGVKILLQTYL-------DDAQWDLSGFVDLILAQTT--VGTVVKIEGDDDNTPFSIVTALNLR 150 (334)
Q Consensus 88 fdp~e~DfhgIK~LL~qlf-------~~~~~dls~LaDlIl~Q~~--vGTvIK~~~ded~dvyg~~SvLNL~ 150 (334)
+...++|..+|..++.++. +....+..+..+.+..... ...+|-.. ++.+.|++++....
T Consensus 5 R~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~---~~~ivG~~~~~~~~ 73 (163)
T d1yr0a1 5 RDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAIL---DGKVAGYASYGDWR 73 (163)
T ss_dssp EECCGGGHHHHHHHHHHHHHHCSSSSSCCCCCHHHHHHHHHHHHHHTCCEEEEEE---TTEEEEEEEEEESS
T ss_pred EeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhhccCCCcEEEEEE---CCeEEEeecceeec
Confidence 4556789999999987753 2345666666666655432 22333322 34688888766554
No 5
>d1s3za_ d.108.1.1 (A:) Aminoglycoside N-acetyltransferase AAC(6')-IY {Salmonella enteritidis [TaxId: 149539]}
Probab=19.13 E-value=47 Score=23.82 Aligned_cols=58 Identities=7% Similarity=0.060 Sum_probs=36.4
Q ss_pred eecCCCCCCHHHHHHHHHHhhccc--CCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEee
Q 019863 86 VFFDPKPDDFHGVKILLQTYLDDA--QWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTAL 147 (334)
Q Consensus 86 effdp~e~DfhgIK~LL~qlf~~~--~~dls~LaDlIl~Q~~vGTvIK~~~ded~dvyg~~SvL 147 (334)
+....++.|..++..|.++++... ......+.+.+... ....+|..++ +.+.|++++-
T Consensus 4 ~Ir~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~va~~~---~~~vG~~~~~ 63 (147)
T d1s3za_ 4 DIRQMNKTHLEHWRGLRKQLWPGHPDDAHLADGEEILQAD-HLASFIAMAD---GVAIGFADAS 63 (147)
T ss_dssp EEEECCGGGHHHHHHHHHHHSTTSCHHHHHHHHHHHHHCS-SEEEEEEEET---TEEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhCC-CcEEEEEEEC---CEEEEEEEEE
Confidence 346678889999999999988542 33445566655543 4344444432 3577777653
No 6
>d2ozga2 d.108.1.10 (A:8-290) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]}
Probab=15.74 E-value=1.8e+02 Score=23.51 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=25.4
Q ss_pred EeecCCCCCCHHHHHHHHHHhhcccCCChhhHHH
Q 019863 85 FVFFDPKPDDFHGVKILLQTYLDDAQWDLSGFVD 118 (334)
Q Consensus 85 Feffdp~e~DfhgIK~LL~qlf~~~~~dls~LaD 118 (334)
|.+...+++|+..|..|+.+.|.....+..-.-+
T Consensus 2 ~~~~ka~~~d~~~l~~l~~~~F~~~~~~~~~~~~ 35 (283)
T d2ozga2 2 FKYTKASQENIQQLGNILEQCFVMSFGDSEIYVK 35 (283)
T ss_dssp EEEEECCTTTHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred eEEEECCHHHHHHHHHHHHHHcCCCcCcHHHHHH
Confidence 6777889999999999999999664444333333
No 7
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.42 E-value=37 Score=25.45 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=21.8
Q ss_pred EEEEeecCCCCC--CHHHHHHHHHHhhcc
Q 019863 82 QADFVFFDPKPD--DFHGVKILLQTYLDD 108 (334)
Q Consensus 82 ~VDFeffdp~e~--DfhgIK~LL~qlf~~ 108 (334)
..-|.|-++..- |.+.||.+|+|++..
T Consensus 74 s~~F~Ftn~~~~~~~Rd~iK~~Lq~~i~~ 102 (108)
T d2rnrb1 74 TTNFHFSNESTAVKERDAVKDLLQQLLPK 102 (108)
T ss_dssp EEEEEECCTTTHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECChHHHHHHHHHHHHHHHHHHHH
Confidence 378999887653 889999999998843
No 8
>d1qsma_ d.108.1.1 (A:) Histone acetyltransferase HPA2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.19 E-value=1.8e+02 Score=20.42 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=32.0
Q ss_pred ecCCCCCCHHHHHHHHHHhhc--ccCCCh---hhHHHHHHcCCCcceE-EEecCCCCCCceEEEEe
Q 019863 87 FFDPKPDDFHGVKILLQTYLD--DAQWDL---SGFVDLILAQTTVGTV-VKIEGDDDNTPFSIVTA 146 (334)
Q Consensus 87 ffdp~e~DfhgIK~LL~qlf~--~~~~dl---s~LaDlIl~Q~~vGTv-IK~~~ded~dvyg~~Sv 146 (334)
.....++|++.+..|.+.|.. .....- ..+..-+.++..-+.. +-++ ++++.+.|++.+
T Consensus 5 IR~~~~~D~e~~~~L~~~y~~fy~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivg~~~~ 69 (150)
T d1qsma_ 5 VRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIKMWAAVAVE-SSSEKIIGMINF 69 (150)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCEEEEEEEE-SSSCCEEEEEEE
T ss_pred EEECCHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhCCCcccceeeeeh-hhcCcEEEEEEE
Confidence 345667899999999887653 223332 2233334554443322 2233 244567777665
No 9
>d1mk4a_ d.108.1.1 (A:) Hypothetical protein YqiY {Bacillus subtilis [TaxId: 1423]}
Probab=12.44 E-value=92 Score=22.75 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=17.3
Q ss_pred cCCCCCCHHHHHHHHHHhhcc
Q 019863 88 FDPKPDDFHGVKILLQTYLDD 108 (334)
Q Consensus 88 fdp~e~DfhgIK~LL~qlf~~ 108 (334)
....++|++.|-.|+++++..
T Consensus 5 R~~~~~D~~~i~~l~~~~~~~ 25 (157)
T d1mk4a_ 5 RTITSSDYEMVTSVLNEWWGG 25 (157)
T ss_dssp EECCGGGHHHHHHHTTTSSTT
T ss_pred EeCCHHHHHHHHHHHHHHhcC
Confidence 456778999999999998854
No 10
>d1i12a_ d.108.1.1 (A:) Glucosamine-phosphate N-acetyltransferase GNA1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.27 E-value=2.3e+02 Score=19.84 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=18.9
Q ss_pred EeecCCCCCCHHHHHHHHHHhhcc
Q 019863 85 FVFFDPKPDDFHGVKILLQTYLDD 108 (334)
Q Consensus 85 Feffdp~e~DfhgIK~LL~qlf~~ 108 (334)
|..+-..+.|+.+|..++..+...
T Consensus 5 ~~IR~~~~~D~~~i~~~~~~~~~~ 28 (157)
T d1i12a_ 5 FYIRRMEEGDLEQVTETLKVLTTV 28 (157)
T ss_dssp EEEEECCGGGHHHHHHHHTTTSCC
T ss_pred cEEEeCCHHHHHHHHHHHHHHhhc
Confidence 566777888999999999776543
Done!