Query 019864
Match_columns 334
No_of_seqs 244 out of 1451
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 08:14:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bei_A Prothrombin; serine pro 38.7 9.6 0.00033 25.8 0.8 9 7-15 15-23 (44)
2 1etr_L Epsilon-thrombin; serin 33.4 13 0.00045 25.7 0.8 8 8-15 21-28 (49)
3 3b9f_L Prothrombin; michaelis 33.4 13 0.00045 25.7 0.8 8 8-15 21-28 (49)
4 3rm2_L Thrombin light chain; s 23.7 24 0.00083 22.9 0.8 8 8-15 8-15 (36)
5 3cqb_A Probable protease HTPX 13.7 35 0.0012 26.6 -0.3 10 173-182 86-95 (107)
6 3plv_C 66 kDa U4/U6.U5 small n 12.3 74 0.0025 18.2 0.9 8 9-16 14-21 (21)
7 2cwq_A Hypothetical protein TT 11.4 1.4E+02 0.0049 23.9 2.8 29 211-239 4-32 (137)
8 2zyz_A Putative uncharacterize 9.3 80 0.0027 25.4 0.5 30 211-240 4-33 (116)
9 3b4r_A Putative zinc metallopr 9.0 1.9E+02 0.0065 25.5 2.9 12 173-184 51-62 (224)
10 2hwj_A AGR_C_2837P, hypothetic 8.0 2E+02 0.0067 25.4 2.5 24 116-139 122-147 (205)
No 1
>3bei_A Prothrombin; serine protease, acute phase, blood coagulation, cleavage on basic residues, disease mutation, gamma-carboxyglutamic ACI glycoprotein; HET: NAG; 1.55A {Homo sapiens} PDB: 1tq7_A* 3lu9_A* 3bef_A* 2pgq_A* 1z8j_A* 1z8i_A* 3hk3_A 2pv9_A* 3edx_A* 2pux_A 3hk6_A 3hki_A* 2ocv_A* 1avg_L 2a1d_A*
Probab=38.68 E-value=9.6 Score=25.75 Aligned_cols=9 Identities=56% Similarity=1.346 Sum_probs=7.0
Q ss_pred cccCCCCCC
Q 019864 7 SECGLKPLP 15 (334)
Q Consensus 7 ~~~~~~~~~ 15 (334)
.+||+|||=
T Consensus 15 ~dCG~RPlF 23 (44)
T 3bei_A 15 ADCGLRPLF 23 (44)
T ss_dssp TTTTCCTTT
T ss_pred cccccchhH
Confidence 369999984
No 2
>1etr_L Epsilon-thrombin; serine proteinase, hydrolase-hydrolase inhibitor complex; HET: MIT; 2.20A {Bos taurus} SCOP: b.47.1.2 PDB: 1bbr_L* 1ets_L* 1ett_L* 1hrt_L 1id5_L 1mkw_L 1mkx_L 1tbq_L 1tbr_L 1toc_A 1ucy_L* 1uvt_L* 1uvu_L* 1vit_L* 1ycp_L 2ody_A*
Probab=33.41 E-value=13 Score=25.71 Aligned_cols=8 Identities=63% Similarity=1.468 Sum_probs=6.6
Q ss_pred ccCCCCCC
Q 019864 8 ECGLKPLP 15 (334)
Q Consensus 8 ~~~~~~~~ 15 (334)
+||+|||=
T Consensus 21 dCG~RPlF 28 (49)
T 1etr_L 21 DCGLRPLF 28 (49)
T ss_dssp TTTCCTTT
T ss_pred ccccchhH
Confidence 49999984
No 3
>3b9f_L Prothrombin; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 1tb6_L* 2b5t_A* 1jou_A* 3gis_A 1jmo_L*
Probab=33.41 E-value=13 Score=25.71 Aligned_cols=8 Identities=63% Similarity=1.468 Sum_probs=6.7
Q ss_pred ccCCCCCC
Q 019864 8 ECGLKPLP 15 (334)
Q Consensus 8 ~~~~~~~~ 15 (334)
+||+|||=
T Consensus 21 dCG~RPlF 28 (49)
T 3b9f_L 21 DCGLRPLF 28 (49)
T ss_dssp TTTCCTTT
T ss_pred ccccchhH
Confidence 49999984
No 4
>3rm2_L Thrombin light chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_L* 1a3e_L* 1a46_L* 1a4w_L* 1a5g_L* 1a61_L* 1abi_L* 1abj_L* 1ad8_L* 1ae8_L* 1afe_L* 1a3b_L* 1ai8_L* 1aix_L* 1awf_L* 1awh_A* 1ay6_L* 1b5g_L* 1b7x_A 1ba8_A* ...
Probab=23.72 E-value=24 Score=22.89 Aligned_cols=8 Identities=63% Similarity=1.468 Sum_probs=6.6
Q ss_pred ccCCCCCC
Q 019864 8 ECGLKPLP 15 (334)
Q Consensus 8 ~~~~~~~~ 15 (334)
.||++|+-
T Consensus 8 ~CG~rPlf 15 (36)
T 3rm2_L 8 DCGLRPLF 15 (36)
T ss_dssp TTTCCTTT
T ss_pred ccccCchh
Confidence 59999985
No 5
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=13.74 E-value=35 Score=26.61 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=8.4
Q ss_pred hhhhcccCCC
Q 019864 173 VLGHDCGHGS 182 (334)
Q Consensus 173 vl~HDc~Hgs 182 (334)
+++||.||..
T Consensus 86 VlaHElgH~~ 95 (107)
T 3cqb_A 86 VLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7899999964
No 6
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=12.32 E-value=74 Score=18.16 Aligned_cols=8 Identities=50% Similarity=0.804 Sum_probs=6.6
Q ss_pred cCCCCCCC.....
Q 019864 9 CGLKPLPH..... 16 (334)
Q Consensus 9 ~~~~~~~~..... 16 (334)
-||+|+|+
T Consensus 14 lGLkplp~..... 21 (21)
T 3plv_C 14 LGLKLIPPxxxxx 26 (26)
T ss_dssp TTCCCCCC.....
T ss_pred cCCCCCCC.....
Confidence 69999983
No 7
>2cwq_A Hypothetical protein TTHA0727; conserved hypothetical protein, all alpha, structural genomi NPPSFA; 1.90A {Thermus thermophilus} SCOP: a.152.1.4
Probab=11.35 E-value=1.4e+02 Score=23.95 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=11.3
Q ss_pred HHHhhccCCCCCCCCCccccCcHHHHHhh
Q 019864 211 SHRTHHQNHGHVENDESWHPLSEKIYRTL 239 (334)
Q Consensus 211 ~H~~HH~~tn~~~~D~~~~p~t~~~y~~l 239 (334)
+|..||...+....|++-.+..++.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 32 (137)
T 2cwq_A 4 SHHHHHHSSGLVPRGSHMDRTHERVLQAM 32 (137)
T ss_dssp --------CCSSCTTGGGSSSSHHHHHHH
T ss_pred ccccccccccCCCCcccCCHHHHHHHHHH
Confidence 56666666665455555555555555543
No 8
>2zyz_A Putative uncharacterized protein PAE0789; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}
Probab=9.32 E-value=80 Score=25.44 Aligned_cols=30 Identities=30% Similarity=0.586 Sum_probs=7.3
Q ss_pred HHHhhccCCCCCCCCCccccCcHHHHHhhh
Q 019864 211 SHRTHHQNHGHVENDESWHPLSEKIYRTLD 240 (334)
Q Consensus 211 ~H~~HH~~tn~~~~D~~~~p~t~~~y~~l~ 240 (334)
+|..||...+...+|++-.-+....|++|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~y~VYkDLR 33 (116)
T 2zyz_A 4 SHHHHHHSSGLVPRGSHMDVLQEQVFKDLK 33 (116)
T ss_dssp -----------------CCHHHHHHHHHHH
T ss_pred ccccccccCccccccccccceeeHHHHHHH
Confidence 577777777777777665444446677664
No 9
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=8.98 E-value=1.9e+02 Score=25.48 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=9.6
Q ss_pred hhhhcccCCCCC
Q 019864 173 VLGHDCGHGSFS 184 (334)
Q Consensus 173 vl~HDc~Hgs~f 184 (334)
++.||.||.-..
T Consensus 51 v~~HElgH~~~A 62 (224)
T 3b4r_A 51 VVLHELGHSYVA 62 (224)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 678999998654
No 10
>2hwj_A AGR_C_2837P, hypothetical protein ATU1540; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.61A {Agrobacterium tumefaciens str} SCOP: d.268.1.3
Probab=7.97 E-value=2e+02 Score=25.44 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.2
Q ss_pred Hhccccc--cccCchhHHHHHHHHHH
Q 019864 116 AAIPKHC--WVKDPWKSMSYVVRDVV 139 (334)
Q Consensus 116 ~aiPk~~--f~~~~~rsl~~l~~d~~ 139 (334)
+.||+++ ++.|+.||+.+.+++.+
T Consensus 122 ~~LP~~l~~l~DDpyRSLa~~~R~~G 147 (205)
T 2hwj_A 122 GDIPKNIHDLEDDPFRSLAGALRMAG 147 (205)
T ss_dssp GGSCSSGGGCEECHHHHHHHHHHHHT
T ss_pred HHcchhHHhCCCCchHHHHHHHHHcC
Confidence 6777755 78999999999999985
Done!