Query 019865
Match_columns 334
No_of_seqs 144 out of 1581
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 08:15:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 1.9E-10 6.6E-15 91.4 4.6 70 248-317 35-105 (137)
2 3b5d_A Multidrug transporter E 98.6 2.3E-08 7.8E-13 76.6 4.8 70 248-317 35-105 (110)
3 2i68_A Protein EMRE; transmemb 98.5 3E-07 1E-11 72.9 7.3 68 74-147 34-103 (137)
4 3b5d_A Multidrug transporter E 98.5 2.3E-06 7.9E-11 65.3 11.8 67 74-146 34-102 (110)
5 2jp3_A FXYD domain-containing 5.8 5.3E+02 0.018 16.9 3.0 13 302-314 25-37 (67)
6 2h3o_A MERF; membrane protein, 5.3 2.2E+02 0.0075 18.4 1.0 27 273-299 7-33 (61)
7 3ne5_A Cation efflux system pr 4.6 7.8E+02 0.027 25.3 5.1 54 254-307 888-941 (1054)
8 4dx5_A Acriflavine resistance 4.4 1.2E+03 0.041 23.8 6.4 50 257-306 885-934 (1057)
9 2hac_A T-cell surface glycopro 4.3 3.8E+02 0.013 14.9 1.3 19 107-131 14-32 (33)
10 2r2v_A GCN4 leucine zipper; co 3.7 5.7E+02 0.019 14.3 1.7 22 312-333 13-34 (34)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.01 E-value=1.9e-10 Score=91.38 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCceEEEec-cchHHHHHHHHHHHHhCCcccchhhhhhHHHHhhHHhhhhhh
Q 019865 248 SAIFAVSVRSVFHTWALRKKGPVYVSMF-KPLGMVVALVFGIAFLGDTLYLGRCVCMILRGLQFLRINKVE 317 (334)
Q Consensus 248 ~gi~~t~~~~~l~~~al~~~~a~~~s~~-~~l~Pv~a~~~~~l~l~E~l~~~~~iG~~lIi~g~~l~~~~~ 317 (334)
.++++++++|++|.+++++.+++++.++ ..+.|+++.+++++++||++++.+++|+++|+.|+++.++.+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5567888999999999999999999998 899999999999999999999999999999999999987644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.64 E-value=2.3e-08 Score=76.58 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCceEEEec-cchHHHHHHHHHHHHhCCcccchhhhhhHHHHhhHHhhhhhh
Q 019865 248 SAIFAVSVRSVFHTWALRKKGPVYVSMF-KPLGMVVALVFGIAFLGDTLYLGRCVCMILRGLQFLRINKVE 317 (334)
Q Consensus 248 ~gi~~t~~~~~l~~~al~~~~a~~~s~~-~~l~Pv~a~~~~~l~l~E~l~~~~~iG~~lIi~g~~l~~~~~ 317 (334)
.++++.+++|.++.+++|+.+.+++.++ ..+.|+++.+++++++||++++.+++|..+|+.|+++.+..+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4556778899999999999999999888 899999999999999999999999999999999999887654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.48 E-value=3e-07 Score=72.88 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=52.1
Q ss_pred HHHHHH-HHHHHHHHHHhhccCchhhhhh-hhhhhHHHHHHHHHHhhccceeeeccccchhhHHHHHHHHHHHHHH
Q 019865 74 LLGLLS-CCGQMFHYFGIENGSPALASAM-IDLTPGFTFILAIIFRMEKLELRVQSSQAKSFGTVLLIGGALIVTL 147 (334)
Q Consensus 74 ~~g~~~-~~~~~~~~~al~~~~~~~a~~i-~~~~P~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~l~Gv~ll~~ 147 (334)
+.+.+. +++++++.+++++.|++.+..+ .++.|++++++++++++|+++.+ +++|+++.++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 456666 8999999999999999999999 89999999999999999999999 99999999999999854
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.47 E-value=2.3e-06 Score=65.31 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=61.7
Q ss_pred HHHHHH-HHHHHHHHHHhhccCchhhhhh-hhhhhHHHHHHHHHHhhccceeeeccccchhhHHHHHHHHHHHHH
Q 019865 74 LLGLLS-CCGQMFHYFGIENGSPALASAM-IDLTPGFTFILAIIFRMEKLELRVQSSQAKSFGTVLLIGGALIVT 146 (334)
Q Consensus 74 ~~g~~~-~~~~~~~~~al~~~~~~~a~~i-~~~~P~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~l~Gv~ll~ 146 (334)
+.+.+. ..++.++.+++++.|.+.+..+ ..+.|+++.+++++++||+++.+ |++|+.+.++|++++.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 455555 8899999999999999999998 79999999999999999999999 9999999999999984
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=5.82 E-value=5.3e+02 Score=16.93 Aligned_cols=13 Identities=8% Similarity=-0.350 Sum_probs=6.6
Q ss_pred hhHHHHhhHHhhh
Q 019865 302 CMILRGLQFLRIN 314 (334)
Q Consensus 302 G~~lIi~g~~l~~ 314 (334)
++++.+.|++++.
T Consensus 25 A~vLfi~GI~iil 37 (67)
T 2jp3_A 25 GGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555655544
No 6
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=5.34 E-value=2.2e+02 Score=18.41 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=10.6
Q ss_pred EeccchHHHHHHHHHHHHhCCcccchh
Q 019865 273 SMFKPLGMVVALVFGIAFLGDTLYLGR 299 (334)
Q Consensus 273 s~~~~l~Pv~a~~~~~l~l~E~l~~~~ 299 (334)
+.+-...|+.+++.|..=+....++..
T Consensus 7 aaLCC~tPvLvil~G~~Glsa~~~wLd 33 (61)
T 2h3o_A 7 VALSSFTPVLVILLGVVGLSALTGYLD 33 (61)
T ss_dssp ---------CHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344556788877777655554444443
No 7
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=4.61 E-value=7.8e+02 Score=25.29 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhccCCceEEEeccchHHHHHHHHHHHHhCCcccchhhhhhHHHH
Q 019865 254 SVRSVFHTWALRKKGPVYVSMFKPLGMVVALVFGIAFLGDTLYLGRCVCMILRG 307 (334)
Q Consensus 254 ~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~~~~~l~l~E~l~~~~~iG~~lIi 307 (334)
++-|.+.....+........++....-+.+.+.+..++|.+++...++|.++++
T Consensus 888 ~li~l~L~~~f~S~~~~l~il~~ip~~~~g~~~~l~l~g~~l~~~~~~g~i~l~ 941 (1054)
T 3ne5_A 888 MIIFVLLYLAFRRVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALA 941 (1054)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTTSHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 334444444444444444444455555566677777889999999999876543
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=4.36 E-value=1.2e+03 Score=23.82 Aligned_cols=50 Identities=12% Similarity=-0.047 Sum_probs=31.3
Q ss_pred HHHHHHHhccCCceEEEeccchHHHHHHHHHHHHhCCcccchhhhhhHHH
Q 019865 257 SVFHTWALRKKGPVYVSMFKPLGMVVALVFGIAFLGDTLYLGRCVCMILR 306 (334)
Q Consensus 257 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~~~~~l~l~E~l~~~~~iG~~lI 306 (334)
|.+.....+........++....-+.+.+.+..++|.+++...++|.+++
T Consensus 885 ~l~L~~~f~s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l 934 (1057)
T 4dx5_A 885 FLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTT 934 (1057)
T ss_dssp HHHHHHHHTCSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHH
Confidence 44444445544444444444444455566667788999999999887654
No 9
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=4.33 E-value=3.8e+02 Score=14.94 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccceeeeccccch
Q 019865 107 GFTFILAIIFRMEKLELRVQSSQAK 131 (334)
Q Consensus 107 ~~~~lla~~~~~e~~~~~~~~~~~~ 131 (334)
+...++..++.+||+++. +
T Consensus 14 iYgii~T~Ly~R~K~~~~------~ 32 (33)
T 2hac_A 14 IYGVILTALFLRVKFSRS------A 32 (33)
T ss_dssp HHHHHHHHHHHHHHSTTC------C
T ss_pred HHHHHHHHHHHHHHhhcc------C
No 10
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=3.69 E-value=5.7e+02 Score=14.30 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=0.0
Q ss_pred hhhhhhHHhhhhhhhhhhhccC
Q 019865 312 RINKVEIMMNFVCACAVLLGQR 333 (334)
Q Consensus 312 l~~~~~~~~~~~~~~~~~~~~~ 333 (334)
+..++.+..+++..-+.++|-|
T Consensus 13 l~~~~~~l~nEv~Rl~~lLg~r 34 (34)
T 2r2v_A 13 VASKLYHNANELARVAKLLGER 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhHHHHHHHHHHHHHhcCC
Done!