Query 019865
Match_columns 334
No_of_seqs 144 out of 1581
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 08:15:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019865.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019865hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 13.9 75 0.0055 15.2 2.9 18 175-192 2-19 (27)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 13.6 2.9E+02 0.021 21.8 22.9 14 32-45 115-128 (447)
3 d1iwga8 f.35.1.1 (A:513-566,A: 9.1 3.5E+02 0.026 19.9 8.9 26 282-307 96-121 (222)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 7.2 5.6E+02 0.041 20.8 19.8 27 72-98 198-225 (383)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 5.7 3.2E+02 0.023 19.8 4.5 15 290-304 86-100 (199)
6 d1pv7a_ f.38.1.2 (A:) Lactose 4.2 7E+02 0.051 18.5 9.2 10 30-39 39-48 (417)
7 d1eysh2 f.23.10.1 (H:7-43) Pho 2.1 3.5E+02 0.026 14.0 1.0 19 305-323 15-33 (37)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 1.7 6.5E+02 0.047 12.7 3.0 19 174-192 17-35 (37)
9 d2p7tc1 f.14.1.1 (C:86-119) Po 1.7 6.1E+02 0.045 12.3 2.0 12 108-119 22-33 (34)
10 d1q90a3 f.23.23.1 (A:248-292) 1.6 7.8E+02 0.057 13.2 4.1 29 174-202 4-32 (45)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.89 E-value=75 Score=15.17 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 019865 175 TIGGIFLAAHSVILAIYY 192 (334)
Q Consensus 175 ~~G~~~~l~aa~~~a~~~ 192 (334)
.+|.++.-++++.|+.|.
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 367788888888888875
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=13.55 E-value=2.9e+02 Score=21.80 Aligned_cols=14 Identities=14% Similarity=-0.050 Sum_probs=8.2
Q ss_pred ChHHHHHHHHHHHH
Q 019865 32 SHFILVVYSNTLAI 45 (334)
Q Consensus 32 ~p~~~~~~R~~~a~ 45 (334)
+...+...|.+.+.
T Consensus 115 ~~~~~~~~~~~~g~ 128 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGW 128 (447)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34456666766654
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.06 E-value=3.5e+02 Score=19.95 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCcccchhhhhhHHHH
Q 019865 282 VALVFGIAFLGDTLYLGRCVCMILRG 307 (334)
Q Consensus 282 ~a~~~~~l~l~E~l~~~~~iG~~lIi 307 (334)
.+.+.+..+.+.+++....+|.++.+
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~ 121 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTI 121 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchh
Confidence 34455666789999988888866543
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=7.17 E-value=5.6e+02 Score=20.77 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=17.3
Q ss_pred HHHHHHHH-HHHHHHHHHHhhccCchhh
Q 019865 72 IFLLGLLS-CCGQMFHYFGIENGSPALA 98 (334)
Q Consensus 72 ~~~~g~~~-~~~~~~~~~al~~~~~~~a 98 (334)
...+|.+. ..++..++-+-+......+
T Consensus 198 ~~~lG~~iLw~gW~gFN~gs~~~~~~~~ 225 (383)
T d1u7ga_ 198 MVFTGTAILYIGWFGFNAGSAGTANEIA 225 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSSSSHHH
T ss_pred hhhHHHHHHHHHHHHhccccccccchHH
Confidence 44556666 7788888877766544443
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.68 E-value=3.2e+02 Score=19.81 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=7.8
Q ss_pred HhCCcccchhhhhhH
Q 019865 290 FLGDTLYLGRCVCMI 304 (334)
Q Consensus 290 ~l~E~l~~~~~iG~~ 304 (334)
++|.+++.....+..
T Consensus 86 ~~g~~l~~~s~~~~~ 100 (199)
T d1iwga7 86 AFGFSINTLTMFGMV 100 (199)
T ss_dssp TTTCCSCHHHHHHHH
T ss_pred cCCCchHHHHHHHHH
Confidence 455555555544444
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.16 E-value=7e+02 Score=18.47 Aligned_cols=10 Identities=10% Similarity=-0.270 Sum_probs=6.5
Q ss_pred CCChHHHHHH
Q 019865 30 GASHFILVVY 39 (334)
Q Consensus 30 ~~~p~~~~~~ 39 (334)
+.++.++...
T Consensus 39 g~s~~~~g~i 48 (417)
T d1pv7a_ 39 HISKSDTGII 48 (417)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 6787776544
No 7
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=2.11 E-value=3.5e+02 Score=14.04 Aligned_cols=19 Identities=11% Similarity=-0.220 Sum_probs=12.0
Q ss_pred HHHhhHHhhhhhhHHhhhh
Q 019865 305 LRGLQFLRINKVEIMMNFV 323 (334)
Q Consensus 305 lIi~g~~l~~~~~~~~~~~ 323 (334)
+-++|++...++|+..|..
T Consensus 15 ~FFagLi~YL~rE~~REGy 33 (37)
T d1eysh2 15 LFFFGLIIYLRREDKREGY 33 (37)
T ss_dssp HHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHhcccccCC
Confidence 4456777777777665543
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.72 E-value=6.5e+02 Score=12.74 Aligned_cols=19 Identities=11% Similarity=0.473 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 019865 174 WTIGGIFLAAHSVILAIYY 192 (334)
Q Consensus 174 ~~~G~~~~l~aa~~~a~~~ 192 (334)
.-+|.++.+.-++.++-|.
T Consensus 17 Ly~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4578888888888887764
No 9
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=1.69 E-value=6.1e+02 Score=12.30 Aligned_cols=12 Identities=8% Similarity=-0.039 Sum_probs=5.2
Q ss_pred HHHHHHHHHhhc
Q 019865 108 FTFILAIIFRME 119 (334)
Q Consensus 108 ~~~lla~~~~~e 119 (334)
+.++..|+..+|
T Consensus 22 ~aa~atwfvgre 33 (34)
T d2p7tc1 22 TAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhccc
Confidence 333444444444
No 10
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.58 E-value=7.8e+02 Score=13.17 Aligned_cols=29 Identities=3% Similarity=0.087 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 019865 174 WTIGGIFLAAHSVILAIYYIVQAWIVRDY 202 (334)
Q Consensus 174 ~~~G~~~~l~aa~~~a~~~v~~~~~~~~~ 202 (334)
...|.+..+.+.+.--+..++-|+--++.
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777655543
Done!