Query 019867
Match_columns 334
No_of_seqs 147 out of 1534
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:10:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12852 groEL chaperonin GroE 100.0 7E-74 1.5E-78 583.7 34.0 333 2-334 146-518 (545)
2 PRK14104 chaperonin GroEL; Pro 100.0 1.9E-73 4.1E-78 579.7 32.5 333 2-334 146-518 (546)
3 PTZ00114 Heat shock protein 60 100.0 8.2E-73 1.8E-77 576.7 32.8 333 2-334 157-533 (555)
4 PRK00013 groEL chaperonin GroE 100.0 1.5E-72 3.2E-77 572.7 34.0 333 2-334 145-517 (542)
5 KOG0356 Mitochondrial chaperon 100.0 2.2E-73 4.8E-78 555.4 21.7 330 1-333 158-529 (550)
6 PLN03167 Chaperonin-60 beta su 100.0 3E-72 6.5E-77 574.9 30.9 333 2-334 200-574 (600)
7 PRK12851 groEL chaperonin GroE 100.0 7E-72 1.5E-76 568.0 32.9 332 2-334 146-517 (541)
8 PRK12850 groEL chaperonin GroE 100.0 7.1E-72 1.5E-76 568.3 32.4 332 2-334 146-517 (544)
9 PRK12849 groEL chaperonin GroE 100.0 9.4E-72 2E-76 566.9 32.8 332 2-334 145-516 (542)
10 TIGR02348 GroEL chaperonin Gro 100.0 1.1E-71 2.4E-76 565.1 32.8 332 2-334 144-515 (524)
11 cd03344 GroEL GroEL_like type 100.0 4.6E-71 9.9E-76 560.0 34.0 332 2-334 143-514 (520)
12 CHL00093 groEL chaperonin GroE 100.0 2.3E-71 5.1E-76 563.4 31.6 331 2-334 145-518 (529)
13 COG0459 GroL Chaperonin GroEL 100.0 2E-57 4.4E-62 458.0 16.3 315 2-334 147-507 (524)
14 cd03343 cpn60 cpn60 chaperonin 100.0 5.2E-55 1.1E-59 443.5 26.8 286 2-334 148-510 (517)
15 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.7E-55 3.7E-60 443.4 22.5 280 2-334 146-476 (484)
16 TIGR02339 thermosome_arch ther 100.0 1.2E-54 2.6E-59 440.9 26.7 286 2-334 149-513 (519)
17 cd03338 TCP1_delta TCP-1 (CTT 100.0 6.2E-54 1.3E-58 435.4 24.7 292 2-334 141-509 (515)
18 TIGR02347 chap_CCT_zeta T-comp 100.0 1.3E-53 2.8E-58 433.7 26.6 286 2-334 150-519 (531)
19 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.6E-53 3.6E-58 433.3 26.2 282 11-334 157-519 (527)
20 TIGR02340 chap_CCT_alpha T-com 100.0 5E-53 1.1E-57 430.4 26.1 291 2-334 146-523 (536)
21 cd03336 TCP1_beta TCP-1 (CTT o 100.0 3.7E-53 8E-58 429.7 24.8 282 6-334 157-507 (517)
22 cd03339 TCP1_epsilon TCP-1 (CT 100.0 6.5E-53 1.4E-57 428.8 25.8 263 25-334 218-521 (526)
23 TIGR02342 chap_CCT_delta T-com 100.0 7.7E-53 1.7E-57 427.4 25.7 269 25-334 203-510 (517)
24 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.3E-52 5E-57 419.7 27.4 269 6-334 152-465 (472)
25 TIGR02343 chap_CCT_epsi T-comp 100.0 4.1E-52 8.9E-57 423.1 25.5 263 25-334 222-525 (532)
26 TIGR02346 chap_CCT_theta T-com 100.0 6.4E-52 1.4E-56 421.7 26.8 280 9-334 165-513 (531)
27 TIGR02344 chap_CCT_gamma T-com 100.0 2.2E-51 4.7E-56 417.6 26.6 256 32-334 225-515 (525)
28 PTZ00212 T-complex protein 1 s 100.0 6.9E-51 1.5E-55 414.4 28.4 256 32-334 230-519 (533)
29 cd03340 TCP1_eta TCP-1 (CTT or 100.0 6.2E-51 1.4E-55 414.0 26.5 280 8-334 165-513 (522)
30 TIGR02345 chap_CCT_eta T-compl 100.0 5.2E-51 1.1E-55 414.4 23.7 286 2-334 153-513 (522)
31 TIGR02341 chap_CCT_beta T-comp 100.0 8.4E-51 1.8E-55 412.4 24.5 256 32-334 219-508 (519)
32 cd00309 chaperonin_type_I_II c 100.0 1.6E-49 3.5E-54 398.4 27.0 269 2-334 141-459 (464)
33 cd03337 TCP1_gamma TCP-1 (CTT 100.0 4E-50 8.7E-55 404.2 22.6 239 32-334 225-474 (480)
34 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 7E-48 1.5E-52 387.1 22.4 288 2-334 121-477 (485)
35 KOG0361 Chaperonin complex com 100.0 2.7E-44 6E-49 338.2 17.3 262 25-334 213-516 (543)
36 KOG0357 Chaperonin complex com 100.0 1.7E-42 3.7E-47 321.3 13.8 240 48-334 138-389 (400)
37 KOG0358 Chaperonin complex com 100.0 6.9E-40 1.5E-44 308.0 16.2 262 32-334 232-527 (534)
38 KOG0363 Chaperonin complex com 100.0 1E-38 2.2E-43 298.9 19.9 256 32-334 223-512 (527)
39 KOG0364 Chaperonin complex com 100.0 2E-38 4.4E-43 302.4 12.4 256 32-334 225-514 (527)
40 KOG0360 Chaperonin complex com 100.0 2.8E-36 6E-41 290.1 16.5 283 9-334 166-529 (545)
41 KOG0359 Chaperonin complex com 100.0 8.9E-33 1.9E-37 263.5 18.4 255 32-333 218-507 (520)
42 KOG0362 Chaperonin complex com 100.0 9.3E-32 2E-36 260.3 22.2 278 10-334 171-514 (537)
43 cd03333 chaperonin_like chaper 99.9 3.5E-23 7.5E-28 186.9 12.6 161 2-226 6-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 4.4E-21 9.5E-26 179.2 14.7 155 25-226 68-253 (261)
45 KOG0230 Phosphatidylinositol-4 98.1 7.4E-06 1.6E-10 89.8 8.1 159 32-237 394-578 (1598)
46 COG0459 GroL Chaperonin GroEL 97.4 0.00022 4.7E-09 73.1 5.1 109 32-157 226-353 (524)
47 TIGR02345 chap_CCT_eta T-compl 74.0 0.97 2.1E-05 46.5 -0.2 61 64-125 246-315 (522)
48 CHL00073 chlN photochlorophyll 62.8 1.8E+02 0.004 29.6 16.2 59 181-248 278-338 (457)
49 cd01461 vWA_interalpha_trypsin 53.4 42 0.00091 28.0 6.2 18 107-124 142-159 (171)
50 PRK13600 putative ribosomal pr 42.7 48 0.001 25.6 4.3 54 57-120 21-74 (84)
51 TIGR01166 cbiO cobalt transpor 42.1 34 0.00074 29.7 3.9 45 32-76 139-188 (190)
52 PLN02512 acetylglutamate kinas 41.6 1.3E+02 0.0027 28.9 8.0 49 184-234 40-90 (309)
53 PF01985 CRS1_YhbY: CRS1 / Yhb 41.4 47 0.001 25.4 4.1 67 56-124 7-75 (84)
54 smart00574 POX domain associat 38.0 58 0.0013 27.7 4.4 43 204-246 84-127 (140)
55 COG3962 Acetolactate synthase 37.5 19 0.00041 36.7 1.6 39 210-248 216-254 (617)
56 COG4148 ModC ABC-type molybdat 35.1 31 0.00067 33.2 2.6 48 32-79 140-193 (352)
57 PF01113 DapB_N: Dihydrodipico 34.3 77 0.0017 25.8 4.6 78 2-84 2-110 (124)
58 COG1534 Predicted RNA-binding 33.2 1.6E+02 0.0035 23.5 5.9 68 55-124 7-76 (97)
59 cd01453 vWA_transcription_fact 33.0 1.3E+02 0.0028 26.2 6.1 18 107-124 148-165 (183)
60 COG1121 ZnuC ABC-type Mn/Zn tr 32.9 56 0.0012 30.6 3.9 47 32-78 151-202 (254)
61 cd03232 ABC_PDR_domain2 The pl 32.8 58 0.0012 28.4 3.8 45 33-77 121-170 (192)
62 PRK10343 RNA-binding protein Y 31.9 1.2E+02 0.0025 24.2 5.0 68 55-124 8-77 (97)
63 PF02601 Exonuc_VII_L: Exonucl 31.8 1.7E+02 0.0036 27.9 7.1 65 1-76 15-87 (319)
64 cd03216 ABC_Carb_Monos_I This 31.4 53 0.0012 27.9 3.3 45 32-76 94-143 (163)
65 PRK13538 cytochrome c biogenes 31.2 63 0.0014 28.4 3.8 46 32-77 141-191 (204)
66 PF03102 NeuB: NeuB family; I 30.6 56 0.0012 30.3 3.5 64 52-124 56-119 (241)
67 TIGR00960 3a0501s02 Type II (G 30.2 59 0.0013 28.7 3.5 45 32-76 150-199 (216)
68 TIGR02673 FtsE cell division A 30.2 56 0.0012 28.8 3.4 45 32-76 149-198 (214)
69 PF07526 POX: Associated with 29.1 77 0.0017 26.9 3.8 42 205-246 85-127 (140)
70 COG1129 MglA ABC-type sugar tr 29.0 67 0.0015 33.1 4.0 47 32-78 413-464 (500)
71 PF00205 TPP_enzyme_M: Thiamin 28.9 90 0.002 25.5 4.2 62 55-142 2-64 (137)
72 cd03213 ABCG_EPDR ABCG transpo 28.7 71 0.0015 27.9 3.7 46 33-78 124-174 (194)
73 cd03218 ABC_YhbG The ABC trans 28.6 62 0.0013 28.9 3.4 45 32-76 145-194 (232)
74 cd03226 ABC_cobalt_CbiO_domain 28.5 60 0.0013 28.5 3.3 45 32-76 138-187 (205)
75 PRK13539 cytochrome c biogenes 28.2 74 0.0016 28.1 3.8 45 33-77 140-189 (207)
76 PRK02955 small acid-soluble sp 28.0 99 0.0022 23.0 3.7 32 198-236 13-44 (68)
77 TIGR00253 RNA_bind_YhbY putati 27.6 1.8E+02 0.004 22.9 5.5 68 55-124 6-75 (95)
78 cd03219 ABC_Mj1267_LivG_branch 27.4 65 0.0014 28.8 3.4 45 33-77 156-205 (236)
79 CHL00200 trpA tryptophan synth 27.3 1.5E+02 0.0032 27.8 5.8 104 15-122 59-172 (263)
80 cd03262 ABC_HisP_GlnQ_permease 27.3 69 0.0015 28.2 3.4 45 32-76 147-196 (213)
81 PRK09580 sufC cysteine desulfu 27.1 67 0.0015 29.0 3.4 45 32-76 157-206 (248)
82 TIGR03771 anch_rpt_ABC anchore 27.1 66 0.0014 28.8 3.3 45 32-76 125-174 (223)
83 TIGR01978 sufC FeS assembly AT 27.0 69 0.0015 28.8 3.4 44 33-76 157-205 (243)
84 cd03235 ABC_Metallic_Cations A 26.8 68 0.0015 28.3 3.3 44 33-76 145-193 (213)
85 cd03215 ABC_Carb_Monos_II This 26.6 79 0.0017 27.3 3.6 43 33-75 117-164 (182)
86 TIGR03740 galliderm_ABC gallid 26.3 70 0.0015 28.4 3.3 45 32-76 136-185 (223)
87 cd03217 ABC_FeS_Assembly ABC-t 26.0 78 0.0017 27.8 3.5 44 33-76 117-165 (200)
88 cd03246 ABCC_Protease_Secretio 26.0 80 0.0017 27.0 3.5 43 34-76 110-157 (173)
89 PRK13543 cytochrome c biogenes 25.8 81 0.0018 28.0 3.6 45 32-76 149-198 (214)
90 KOG1200 Mitochondrial/plastidi 25.5 3.4E+02 0.0073 24.9 7.3 76 2-80 15-105 (256)
91 PRK11614 livF leucine/isoleuci 25.4 71 0.0015 28.7 3.2 45 32-76 149-198 (237)
92 cd03225 ABC_cobalt_CbiO_domain 25.4 74 0.0016 28.0 3.2 45 32-76 146-195 (211)
93 PRK09493 glnQ glutamine ABC tr 25.4 76 0.0017 28.6 3.4 46 32-77 148-198 (240)
94 PRK10908 cell division protein 25.0 78 0.0017 28.1 3.4 45 32-76 149-198 (222)
95 CHL00131 ycf16 sulfate ABC tra 24.6 82 0.0018 28.6 3.5 44 33-76 164-212 (252)
96 cd03269 ABC_putative_ATPase Th 24.6 75 0.0016 27.9 3.1 44 33-76 141-189 (210)
97 PRK11264 putative amino-acid A 24.5 77 0.0017 28.7 3.3 44 33-76 157-205 (250)
98 cd03265 ABC_DrrA DrrA is the A 24.5 83 0.0018 27.9 3.4 45 32-76 143-193 (220)
99 PF03135 CagE_TrbE_VirB: CagE, 24.5 3.7E+02 0.008 23.6 7.6 27 193-219 150-176 (205)
100 cd03266 ABC_NatA_sodium_export 24.4 82 0.0018 27.8 3.4 45 32-76 148-197 (218)
101 cd03268 ABC_BcrA_bacitracin_re 24.4 69 0.0015 28.1 2.9 45 32-76 138-187 (208)
102 cd03231 ABC_CcmA_heme_exporter 24.3 99 0.0021 27.1 3.9 44 32-75 137-185 (201)
103 cd03234 ABCG_White The White s 24.3 95 0.0021 27.7 3.8 48 32-79 155-207 (226)
104 PRK00129 upp uracil phosphorib 24.3 2.1E+02 0.0046 25.6 6.0 53 35-87 121-174 (209)
105 cd03214 ABC_Iron-Siderophores_ 24.3 72 0.0016 27.4 2.9 45 32-76 109-159 (180)
106 cd03255 ABC_MJ0796_Lo1CDE_FtsE 24.2 93 0.002 27.5 3.7 46 32-77 152-203 (218)
107 PRK10619 histidine/lysine/argi 24.1 78 0.0017 28.9 3.3 45 32-76 164-213 (257)
108 TIGR03608 L_ocin_972_ABC putat 24.1 89 0.0019 27.3 3.5 45 32-76 146-195 (206)
109 PLN02825 amino-acid N-acetyltr 24.0 6.7E+02 0.014 26.0 10.2 18 185-202 11-28 (515)
110 CHL00202 argB acetylglutamate 24.0 1.4E+02 0.003 28.1 5.0 52 184-236 16-68 (284)
111 KOG3083 Prohibitin [Posttransl 24.0 55 0.0012 30.2 2.1 24 1-24 207-230 (271)
112 PRK11124 artP arginine transpo 23.7 83 0.0018 28.4 3.3 45 32-76 153-202 (242)
113 PRK15056 manganese/iron transp 23.7 81 0.0017 29.2 3.3 45 32-76 154-203 (272)
114 cd03297 ABC_ModC_molybdenum_tr 23.6 86 0.0019 27.7 3.3 45 32-76 143-193 (214)
115 COG1116 TauB ABC-type nitrate/ 23.5 95 0.0021 29.0 3.6 47 33-79 143-195 (248)
116 TIGR02324 CP_lyasePhnL phospho 23.5 1E+02 0.0023 27.3 3.9 43 32-74 161-208 (224)
117 cd03224 ABC_TM1139_LivF_branch 23.4 87 0.0019 27.7 3.3 45 32-76 144-193 (222)
118 PRK13601 putative L7Ae-like ri 23.4 1.4E+02 0.0031 22.8 4.0 27 58-84 17-43 (82)
119 PF14681 UPRTase: Uracil phosp 23.2 1.3E+02 0.0028 27.0 4.3 75 32-106 115-201 (207)
120 TIGR01091 upp uracil phosphori 23.1 2.3E+02 0.0049 25.4 6.0 54 34-87 118-172 (207)
121 cd03261 ABC_Org_Solvent_Resist 22.9 88 0.0019 28.1 3.3 45 32-76 148-198 (235)
122 PRK10895 lipopolysaccharide AB 22.9 89 0.0019 28.2 3.3 43 33-75 150-197 (241)
123 TIGR02770 nickel_nikD nickel i 22.7 89 0.0019 28.0 3.3 45 32-76 137-187 (230)
124 TIGR03873 F420-0_ABC_ATP propo 22.5 92 0.002 28.4 3.4 46 32-77 149-199 (256)
125 cd03292 ABC_FtsE_transporter F 22.3 93 0.002 27.3 3.3 44 32-75 148-196 (214)
126 cd03257 ABC_NikE_OppD_transpor 22.2 1E+02 0.0022 27.4 3.5 45 32-76 157-207 (228)
127 cd03256 ABC_PhnC_transporter A 22.0 96 0.0021 27.8 3.4 46 32-77 156-207 (241)
128 TIGR03258 PhnT 2-aminoethylpho 21.9 86 0.0019 30.7 3.2 46 32-77 149-201 (362)
129 PRK13540 cytochrome c biogenes 21.9 1.2E+02 0.0026 26.5 3.9 43 32-74 139-186 (200)
130 PF13607 Succ_CoA_lig: Succiny 21.8 1.3E+02 0.0028 25.3 3.8 75 2-79 3-95 (138)
131 cd03230 ABC_DR_subfamily_A Thi 21.7 1E+02 0.0022 26.3 3.3 41 35-75 110-155 (173)
132 PF13768 VWA_3: von Willebrand 21.6 3.2E+02 0.007 22.4 6.4 65 53-121 79-153 (155)
133 cd03296 ABC_CysA_sulfate_impor 21.5 99 0.0021 27.9 3.3 45 32-76 148-198 (239)
134 PRK11629 lolD lipoprotein tran 21.5 1E+02 0.0022 27.6 3.4 46 32-77 157-208 (233)
135 cd03229 ABC_Class3 This class 21.4 1E+02 0.0022 26.4 3.3 43 33-75 113-161 (178)
136 PRK13638 cbiO cobalt transport 21.4 95 0.0021 28.7 3.3 45 32-76 148-197 (271)
137 cd01451 vWA_Magnesium_chelatas 21.4 3.3E+02 0.0071 23.2 6.5 18 106-123 146-163 (178)
138 cd04250 AAK_NAGK-C AAK_NAGK-C: 21.4 4.6E+02 0.01 24.4 8.0 49 185-235 8-58 (279)
139 PRK11650 ugpC glycerol-3-phosp 21.2 1E+02 0.0022 30.2 3.5 46 32-77 146-197 (356)
140 cd03238 ABC_UvrA The excision 21.2 1.1E+02 0.0024 26.7 3.4 44 33-76 100-150 (176)
141 TIGR01189 ccmA heme ABC export 21.1 1.3E+02 0.0029 26.1 4.0 44 32-75 139-187 (198)
142 TIGR02315 ABC_phnC phosphonate 21.0 1.1E+02 0.0023 27.6 3.5 45 32-76 157-207 (243)
143 PF14098 SSPI: Small, acid-sol 20.7 1.1E+02 0.0025 22.5 2.8 32 198-236 11-42 (65)
144 PRK11231 fecE iron-dicitrate t 20.6 1E+02 0.0023 28.0 3.3 45 32-76 150-199 (255)
145 COG0430 RCL1 RNA 3'-terminal p 20.5 2.6E+02 0.0057 27.3 6.0 36 92-127 31-70 (341)
146 COG0028 IlvB Thiamine pyrophos 20.2 4.9E+02 0.011 27.1 8.5 66 12-77 133-213 (550)
147 PRK10247 putative ABC transpor 20.1 1.1E+02 0.0023 27.5 3.2 45 32-76 149-199 (225)
148 TIGR02769 nickel_nikE nickel i 20.1 1.1E+02 0.0023 28.2 3.3 46 32-77 162-213 (265)
149 PF01256 Carb_kinase: Carbohyd 20.0 1.9E+02 0.0042 26.6 5.0 77 39-122 68-157 (242)
150 cd03301 ABC_MalK_N The N-termi 20.0 1.1E+02 0.0025 26.8 3.3 45 32-76 142-192 (213)
No 1
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7e-74 Score=583.70 Aligned_cols=333 Identities=40% Similarity=0.629 Sum_probs=319.3
Q ss_pred cEEEeecCCChhHhHHHHHHHhh-----------------------cceee-------ee-----eEEeecCeEEEeecc
Q 019867 2 KVGTTAANGDGEIGELIAKVFEK-----------------------GWEND-------LI-----TIFVLDGALVLIYDT 46 (334)
Q Consensus 2 ~va~isan~d~~~g~lia~a~~~-----------------------G~~~~-------~~-----~~~~l~~p~Ill~d~ 46 (334)
+||++|+|+|+.+|++|++|+.+ ||.|+ |+ |+.+++||+||++|+
T Consensus 146 ~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~ 225 (545)
T PRK12852 146 QVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEK 225 (545)
T ss_pred HHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecC
Confidence 57889999999999999999988 66676 33 789999999999999
Q ss_pred CCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCC
Q 019867 47 KISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGS 126 (334)
Q Consensus 47 ~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~ 126 (334)
+|++++++.|+|+.+.++|+||||++++|+++||++|+.|+++|.++|++||+|+||++|+++|+|||++|||++++++.
T Consensus 226 ~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~ 305 (545)
T PRK12852 226 KLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDL 305 (545)
T ss_pred ccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccch----hHHHHHhhhcCCeEEEEEccCC
Q 019867 127 GMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLKVCGHG 202 (334)
Q Consensus 127 ~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~----~l~eR~~~lsg~~~tI~vgG~t 202 (334)
|.+++++++++||+|++|++++++++++++++++++++.|+++|+.++++++++ +|+||+++|+|+++||+|||+|
T Consensus 306 ~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t 385 (545)
T PRK12852 306 GIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGAT 385 (545)
T ss_pred CCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 888999999999999999999999999999999999999999999999998766 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-
Q 019867 203 KAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSV- 281 (334)
Q Consensus 203 ~~~~~E~~~~i~DAl~~~r~a~~~gvVpGGGaael~~s~~L~~~~~~~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~- 281 (334)
+.+++|+||+++||+|++|+++++|||||||++|++++..|.++...++++|+|+++|++||+.||++||+|||+|+.+
T Consensus 386 ~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~v 465 (545)
T PRK12852 386 EVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIV 465 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999989999999999999999999876678899999999999999999999999999999
Q ss_pred HHHHHhcCCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 282 IDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 282 ~~kl~~~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
+++|++..++++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 466 l~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i 518 (545)
T PRK12852 466 VGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTT 518 (545)
T ss_pred HHHHHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhH
Confidence 99998766678999999999999999999999999999999999999999986
No 2
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.9e-73 Score=579.74 Aligned_cols=333 Identities=41% Similarity=0.634 Sum_probs=319.3
Q ss_pred cEEEeecCCChhHhHHHHHHHhh-----------------------cceee-------ee-----eEEeecCeEEEeecc
Q 019867 2 KVGTTAANGDGEIGELIAKVFEK-----------------------GWEND-------LI-----TIFVLDGALVLIYDT 46 (334)
Q Consensus 2 ~va~isan~d~~~g~lia~a~~~-----------------------G~~~~-------~~-----~~~~l~~p~Ill~d~ 46 (334)
+||++|+|+|+.+|+++++|+.+ ||.|+ |+ |+.++++|+||++|.
T Consensus 146 ~va~~s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~ 225 (546)
T PRK14104 146 QVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEK 225 (546)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehh
Confidence 57889999999999999999988 66776 33 588999999999999
Q ss_pred CCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCC
Q 019867 47 KISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGS 126 (334)
Q Consensus 47 ~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~ 126 (334)
+++++++++|+|+.+.++|+||||++++|+++||++|..|++++.++|+|||+|+||++|+++|+|||++|||++++++.
T Consensus 226 ~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~ 305 (546)
T PRK14104 226 KLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDL 305 (546)
T ss_pred hhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccch----hHHHHHhhhcCCeEEEEEccCC
Q 019867 127 GMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLKVCGHG 202 (334)
Q Consensus 127 ~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~----~l~eR~~~lsg~~~tI~vgG~t 202 (334)
++.++++++++||+|++|++++++++++++|++++++..|+++|++++++++++ +|+||+++|+|+++||+|||+|
T Consensus 306 ~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t 385 (546)
T PRK14104 306 GIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGAT 385 (546)
T ss_pred CCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999877 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-
Q 019867 203 KAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSV- 281 (334)
Q Consensus 203 ~~~~~E~~~~i~DAl~~~r~a~~~gvVpGGGaael~~s~~L~~~~~~~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~- 281 (334)
+.+++|++|+++||+|++++++++|||||||++|++++..|+++...++++++|+++|++||+.||++||+|||+|+.+
T Consensus 386 ~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v 465 (546)
T PRK14104 386 EVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVI 465 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999999999999999998855588999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 282 IDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 282 ~~kl~~~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
+.+|++.+++++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 466 ~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~i 518 (546)
T PRK14104 466 VGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITT 518 (546)
T ss_pred HHHHHhcCCCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 99998766678999999999999999999999999999999999999999985
No 3
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=8.2e-73 Score=576.67 Aligned_cols=333 Identities=46% Similarity=0.688 Sum_probs=317.2
Q ss_pred cEEEeecCCChhHhHHHHHHHhh-----------------------cceee-------ee-----eEEeecCeEEEeecc
Q 019867 2 KVGTTAANGDGEIGELIAKVFEK-----------------------GWEND-------LI-----TIFVLDGALVLIYDT 46 (334)
Q Consensus 2 ~va~isan~d~~~g~lia~a~~~-----------------------G~~~~-------~~-----~~~~l~~p~Ill~d~ 46 (334)
+||.+|+|+|+.+|+++++|+.+ ||.|+ |+ |+.+++||+||++|+
T Consensus 157 ~va~ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~ 236 (555)
T PTZ00114 157 NVATISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDK 236 (555)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcC
Confidence 67889999999999999999987 67776 33 689999999999999
Q ss_pred CCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCC-
Q 019867 47 KISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGG- 125 (334)
Q Consensus 47 ~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~- 125 (334)
+|++++++.|+|+++.++|+||||++++|+++||++|+.|+++|+++|++||+|++|+.++++|+|||.+|||+++++.
T Consensus 237 ~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~ 316 (555)
T PTZ00114 237 KISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDN 316 (555)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCcccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccch----hHHHHHhhhcCCeEEEEEccC
Q 019867 126 SGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLKVCGH 201 (334)
Q Consensus 126 ~~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~----~l~eR~~~lsg~~~tI~vgG~ 201 (334)
.++.++++++++||+|++|++++++++++++++++++|++|+++|+.+++..+++ +|+||+++|+|+++||+|||+
T Consensus 317 ~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~ 396 (555)
T PTZ00114 317 VGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGA 396 (555)
T ss_pred cccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 7788899999999999999999999999999999999999999999999987755 999999999999999999999
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHcC--C-ChhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019867 202 GKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT--T-NSDQKIGVQIVQNALKMAAYLIASNAGVD 278 (334)
Q Consensus 202 t~~~~~E~~~~i~DAl~~~r~a~~~gvVpGGGaael~~s~~L~~~~~--~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d 278 (334)
|+.+++|++|+++||+|++|+++++|||||||++|+++|..|++++. . ++++|+|+++|++||+.||++||+|||+|
T Consensus 397 t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d 476 (555)
T PTZ00114 397 SEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVE 476 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999998864 3 68999999999999999999999999999
Q ss_pred HHH-HHHHHhcCCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 279 GSV-IDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 279 ~~~-~~kl~~~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
+.+ +++|++.+++++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 477 ~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~i 533 (555)
T PTZ00114 477 GAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTT 533 (555)
T ss_pred HHHHHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhH
Confidence 999 99998756678999999999999999999999999999999999999999985
No 4
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.5e-72 Score=572.73 Aligned_cols=333 Identities=42% Similarity=0.623 Sum_probs=317.5
Q ss_pred cEEEeecCCChhHhHHHHHHHhh-----------------------cceee-------ee-----eEEeecCeEEEeecc
Q 019867 2 KVGTTAANGDGEIGELIAKVFEK-----------------------GWEND-------LI-----TIFVLDGALVLIYDT 46 (334)
Q Consensus 2 ~va~isan~d~~~g~lia~a~~~-----------------------G~~~~-------~~-----~~~~l~~p~Ill~d~ 46 (334)
+||++|+|+|+.+++++++|+.+ |+.|+ |+ |+.+++||+||++|+
T Consensus 145 ~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~ 224 (542)
T PRK00013 145 QVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDK 224 (542)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcC
Confidence 57889999999999999999977 66666 32 589999999999999
Q ss_pred CCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCC
Q 019867 47 KISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGS 126 (334)
Q Consensus 47 ~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~ 126 (334)
+|++++++.|+++++.++|+||||++++|+++||++|+.|+++|+++|++||+|+||++|+++|+|||.+|||++++++.
T Consensus 225 ~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~ 304 (542)
T PRK00013 225 KISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEEL 304 (542)
T ss_pred ccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccch----hHHHHHhhhcCCeEEEEEccCC
Q 019867 127 GMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLKVCGHG 202 (334)
Q Consensus 127 ~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~----~l~eR~~~lsg~~~tI~vgG~t 202 (334)
|.+++++++++||+|+.|+++++++++++++++++.+..|+++|++++++++++ +|+||+++|+|+++||+|||+|
T Consensus 305 ~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t 384 (542)
T PRK00013 305 GLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAAT 384 (542)
T ss_pred cCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 888999999999999999999999999999999999999999999999998777 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-
Q 019867 203 KAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSV- 281 (334)
Q Consensus 203 ~~~~~E~~~~i~DAl~~~r~a~~~gvVpGGGaael~~s~~L~~~~~~~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~- 281 (334)
+.+++|++|+++||+|++|+++++|||||||++|++++..|.++...++++|+|+++|++||+.|||+||+|||+|+.+
T Consensus 385 ~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v 464 (542)
T PRK00013 385 EVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEALKGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVV 464 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999989999999999999999999833388999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 282 IDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 282 ~~kl~~~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
+.+|++..++++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 465 l~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (542)
T PRK00013 465 VEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTT 517 (542)
T ss_pred HHHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHH
Confidence 99998755678999999999999999999999999999999999999999986
No 5
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-73 Score=555.45 Aligned_cols=330 Identities=42% Similarity=0.641 Sum_probs=319.5
Q ss_pred CcEEEeecCCChhHhHHHHHHHhh-----------------------cceee-------ee-----eEEeecCeEEEeec
Q 019867 1 MKVGTTAANGDGEIGELIAKVFEK-----------------------GWEND-------LI-----TIFVLDGALVLIYD 45 (334)
Q Consensus 1 ~~va~isan~d~~~g~lia~a~~~-----------------------G~~~~-------~~-----~~~~l~~p~Ill~d 45 (334)
.|||+||||||..+|++|++||++ ||+|| |+ +.++|++|++|+++
T Consensus 158 aqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~ 237 (550)
T KOG0356|consen 158 AQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSE 237 (550)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhh
Confidence 479999999999999999999999 99999 66 78999999999999
Q ss_pred cCCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCC
Q 019867 46 TKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGG 125 (334)
Q Consensus 46 ~~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~ 125 (334)
+||+++++|.|.||...+..+||+||++||+.++|++|+.|++++.+++||||+|+||+.|++.+.|||.+||++++..+
T Consensus 238 kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e 317 (550)
T KOG0356|consen 238 KKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEE 317 (550)
T ss_pred hhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CcccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccch----hHHHHHhhhcCCeEEEEEcc
Q 019867 126 SG-MNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLKVCG 200 (334)
Q Consensus 126 ~~-~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~----~l~eR~~~lsg~~~tI~vgG 200 (334)
.+ ++++++++++||.+++|.++++.++++.+.+++++++.||+|++..++.++++ +|+||+++|+|++++|+|||
T Consensus 318 ~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg 397 (550)
T KOG0356|consen 318 LSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGG 397 (550)
T ss_pred hhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecC
Confidence 88 79999999999999999999999999999999999999999999999988666 89999999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 019867 201 HGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDG 279 (334)
Q Consensus 201 ~t~~~~~E~~~~i~DAl~~~r~a~~~gvVpGGGaael~~s~~L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~ 279 (334)
.|+.|++|+++|++||||++|+|+++|+|||||+++++|+..|+++... +.+++.|++++++||..|.++||+|||.|+
T Consensus 398 ~se~Ev~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg 477 (550)
T KOG0356|consen 398 HSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDG 477 (550)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCch
Confidence 9999999999999999999999999999999999999999999998874 789999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhc
Q 019867 280 SV-IDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNA 333 (334)
Q Consensus 280 ~~-~~kl~~~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~ 333 (334)
.. +.|++. ..+|||+.+|+|+||++.||+||++|.+++|..|.++|+++++
T Consensus 478 ~~vv~Kv~~---~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~t 529 (550)
T KOG0356|consen 478 SVVVEKVLN---DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTT 529 (550)
T ss_pred HHHHHHHHh---hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhh
Confidence 99 999984 3899999999999999999999999999999999999999986
No 6
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=3e-72 Score=574.90 Aligned_cols=333 Identities=35% Similarity=0.556 Sum_probs=316.3
Q ss_pred cEEEeecCCChhHhHHHHHHHhh-----------------------cceee-------ee-----eEEeecCeEEEeecc
Q 019867 2 KVGTTAANGDGEIGELIAKVFEK-----------------------GWEND-------LI-----TIFVLDGALVLIYDT 46 (334)
Q Consensus 2 ~va~isan~d~~~g~lia~a~~~-----------------------G~~~~-------~~-----~~~~l~~p~Ill~d~ 46 (334)
+||++|+|+|+.+|+||++|+.+ ||.|| |+ |+.+++||+||++|+
T Consensus 200 ~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~ 279 (600)
T PLN03167 200 DVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDK 279 (600)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEcc
Confidence 68899999999999999999988 77777 54 799999999999999
Q ss_pred CCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCC
Q 019867 47 KISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGS 126 (334)
Q Consensus 47 ~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~ 126 (334)
+|++++++.|+++.+.++|+||||++++|++++|++|+.|+++|.+++++||+|+||+.++++|+|||++|||++++++.
T Consensus 280 ~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~ 359 (600)
T PLN03167 280 KITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEV 359 (600)
T ss_pred ccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccch----hHHHHHhhhcCCeEEEEEccCC
Q 019867 127 GMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLKVCGHG 202 (334)
Q Consensus 127 ~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~----~l~eR~~~lsg~~~tI~vgG~t 202 (334)
|+.++++++++||+|++|++++|+|+++++.++++.+++|+.+++.++++++++ +|++|+++|+|++++|+|||+|
T Consensus 360 ~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t 439 (600)
T PLN03167 360 GLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQT 439 (600)
T ss_pred cCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCc
Confidence 888999999999999999999999999999999999999999999999887665 8999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 019867 203 KAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT--NSDQKIGVQIVQNALKMAAYLIASNAGVDGS 280 (334)
Q Consensus 203 ~~~~~E~~~~i~DAl~~~r~a~~~gvVpGGGaael~~s~~L~~~~~~--~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~ 280 (334)
+.+++|+||+++||||++|+|+++|+|||||++|++++..|+++... ..++..|++++++||+.|||+||+|||+|+.
T Consensus 440 ~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~ 519 (600)
T PLN03167 440 ETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGS 519 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHH
Confidence 99999999999999999999999999999999999999999988654 3455578999999999999999999999999
Q ss_pred H-HHHHHhcCCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 281 V-IDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 281 ~-~~kl~~~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
+ +.+|+.++++++|||+.+|+++||++.|||||++||+++|++|+++|++||+|
T Consensus 520 ~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~i 574 (600)
T PLN03167 520 VVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTS 574 (600)
T ss_pred HHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99998666778999999999999999999999999999999999999999986
No 7
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7e-72 Score=568.03 Aligned_cols=332 Identities=43% Similarity=0.642 Sum_probs=317.0
Q ss_pred cEEEeecCCChhHhHHHHHHHhh-----------------------cceee-------ee-----eEEeecCeEEEeecc
Q 019867 2 KVGTTAANGDGEIGELIAKVFEK-----------------------GWEND-------LI-----TIFVLDGALVLIYDT 46 (334)
Q Consensus 2 ~va~isan~d~~~g~lia~a~~~-----------------------G~~~~-------~~-----~~~~l~~p~Ill~d~ 46 (334)
+||++|+++|+.+++++++|+.+ |+.|+ |+ |+.+++||+||++|+
T Consensus 146 ~va~~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~ 225 (541)
T PRK12851 146 QVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEK 225 (541)
T ss_pred HHHHHhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcC
Confidence 57788999999999999999877 67776 33 789999999999999
Q ss_pred CCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCC
Q 019867 47 KISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGS 126 (334)
Q Consensus 47 ~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~ 126 (334)
++++.+++.|+++.+.++|+||||++++|+++|+++|+.|+++|.++|+|||+|+||+.|+++|+|||++|||++++++.
T Consensus 226 ~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~ 305 (541)
T PRK12851 226 KISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDL 305 (541)
T ss_pred CcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCcccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccch----hHHHHHhhhcCCeEEEEEccCC
Q 019867 127 GMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLKVCGHG 202 (334)
Q Consensus 127 ~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~----~l~eR~~~lsg~~~tI~vgG~t 202 (334)
+++++++++++||+|+.|++++++|++++++++++++..|+++|++++++++++ +|+||+++|+|+++||+|||+|
T Consensus 306 ~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t 385 (541)
T PRK12851 306 GIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGAST 385 (541)
T ss_pred CCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 778999999999999999999999999999999999999999999999998766 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-
Q 019867 203 KAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSV- 281 (334)
Q Consensus 203 ~~~~~E~~~~i~DAl~~~r~a~~~gvVpGGGaael~~s~~L~~~~~~~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~- 281 (334)
+.+++|++|+++||||++|+++++|||||||++|+++|..|+++...++++++|+++|++||+.||++||+|||+|+.+
T Consensus 386 ~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v 465 (541)
T PRK12851 386 EVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVV 465 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 9999999999999999999999989999999999999999998876688999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 282 IDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 282 ~~kl~~~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
+.+|++.. .++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 466 l~~l~~~~-~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~i 517 (541)
T PRK12851 466 VGKLREKP-GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTT 517 (541)
T ss_pred HHHHHhhC-CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhH
Confidence 99998764 47999999999999999999999999999999999999999986
No 8
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.1e-72 Score=568.30 Aligned_cols=332 Identities=41% Similarity=0.619 Sum_probs=316.1
Q ss_pred cEEEeecCCChhHhHHHHHHHhh-----------------------cceee-------ee-----eEEeecCeEEEeecc
Q 019867 2 KVGTTAANGDGEIGELIAKVFEK-----------------------GWEND-------LI-----TIFVLDGALVLIYDT 46 (334)
Q Consensus 2 ~va~isan~d~~~g~lia~a~~~-----------------------G~~~~-------~~-----~~~~l~~p~Ill~d~ 46 (334)
+||.+|+++|+.+++++++|+.+ ||.|+ |+ |+.+++||+||++|+
T Consensus 146 ~va~~s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~ 225 (544)
T PRK12850 146 QVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEK 225 (544)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEec
Confidence 57788999999999999999976 66776 33 589999999999999
Q ss_pred CCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCC
Q 019867 47 KISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGS 126 (334)
Q Consensus 47 ~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~ 126 (334)
+|++.+++.|++++++++|+||||++++|+++||++|+.|+++|++++++||+|+||+.|+++|+|||++|||++++++.
T Consensus 226 ~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~ 305 (544)
T PRK12850 226 KISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDL 305 (544)
T ss_pred ccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccch----hHHHHHhhhcCCeEEEEEccCC
Q 019867 127 GMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLKVCGHG 202 (334)
Q Consensus 127 ~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~----~l~eR~~~lsg~~~tI~vgG~t 202 (334)
+++++++++++||+|++|+++++++++++++++++++..|++++++++++++++ +|+||+++|+|+++||+|||+|
T Consensus 306 ~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t 385 (544)
T PRK12850 306 GIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGAT 385 (544)
T ss_pred CCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCc
Confidence 888999999999999999999999999999999999999999999999998777 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-
Q 019867 203 KAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSV- 281 (334)
Q Consensus 203 ~~~~~E~~~~i~DAl~~~r~a~~~gvVpGGGaael~~s~~L~~~~~~~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~- 281 (334)
+.+++|++|+++||+|++|+++++|||||||++|++++..|+++...++++|+|+++|++||+.||++||+|||+|+.+
T Consensus 386 ~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v 465 (544)
T PRK12850 386 EVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEPLRQIATNAGFEGSVV 465 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 9999999999999999999999889999999999999999999843488999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 282 IDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 282 ~~kl~~~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
+.+|++.. .++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 466 ~~~l~~~~-~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (544)
T PRK12850 466 VGKVAELP-GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITT 517 (544)
T ss_pred HHHHHhhC-CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhH
Confidence 99998753 57999999999999999999999999999999999999999986
No 9
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9.4e-72 Score=566.88 Aligned_cols=332 Identities=44% Similarity=0.635 Sum_probs=316.8
Q ss_pred cEEEeecCCChhHhHHHHHHHhh-----------------------cceee-------ee-----eEEeecCeEEEeecc
Q 019867 2 KVGTTAANGDGEIGELIAKVFEK-----------------------GWEND-------LI-----TIFVLDGALVLIYDT 46 (334)
Q Consensus 2 ~va~isan~d~~~g~lia~a~~~-----------------------G~~~~-------~~-----~~~~l~~p~Ill~d~ 46 (334)
+||.+|+|+|+.+++++++|+.+ |+.|+ |+ |+.+++||+||++|+
T Consensus 145 ~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~ 224 (542)
T PRK12849 145 QVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDK 224 (542)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecC
Confidence 57788999999999999999987 55665 32 589999999999999
Q ss_pred CCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCC
Q 019867 47 KISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGS 126 (334)
Q Consensus 47 ~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~ 126 (334)
+|++++++.|+++++.++|+||||++++|+++|+++|..|+++|.++|++||.|+++++|+++|+|||.+|||++++++.
T Consensus 225 ~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~ 304 (542)
T PRK12849 225 KISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDL 304 (542)
T ss_pred CcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccch----hHHHHHhhhcCCeEEEEEccCC
Q 019867 127 GMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLKVCGHG 202 (334)
Q Consensus 127 ~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~----~l~eR~~~lsg~~~tI~vgG~t 202 (334)
+..++++++++||+|++|+++++++++++++++++++..|+++|++++++++++ +|+||+++|+|+++||+|||+|
T Consensus 305 ~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t 384 (542)
T PRK12849 305 GLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAAT 384 (542)
T ss_pred cCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 888999999999999999999999999999999999999999999999998777 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-
Q 019867 203 KAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSV- 281 (334)
Q Consensus 203 ~~~~~E~~~~i~DAl~~~r~a~~~gvVpGGGaael~~s~~L~~~~~~~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~- 281 (334)
+.+++|++|+++||+|++|+++++|||||||++|+++|..|.+++..++++|+|+++|++||+.||++||+|||+|+.+
T Consensus 385 ~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v 464 (542)
T PRK12849 385 EVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVV 464 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999989999999999999999999884488999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 282 IDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 282 ~~kl~~~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
+.+|++.. +++|||+.+|+++||++.|||||+.||.++|++|+++|++||+|
T Consensus 465 i~~L~~~~-~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~i 516 (542)
T PRK12849 465 VAKVLELE-DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTT 516 (542)
T ss_pred HHHHHhhC-CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhH
Confidence 99998764 67999999999999999999999999999999999999999986
No 10
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.1e-71 Score=565.14 Aligned_cols=332 Identities=42% Similarity=0.630 Sum_probs=314.9
Q ss_pred cEEEeecCCChhHhHHHHHHHhh-----------------------cceee-------ee-----eEEeecCeEEEeecc
Q 019867 2 KVGTTAANGDGEIGELIAKVFEK-----------------------GWEND-------LI-----TIFVLDGALVLIYDT 46 (334)
Q Consensus 2 ~va~isan~d~~~g~lia~a~~~-----------------------G~~~~-------~~-----~~~~l~~p~Ill~d~ 46 (334)
+||.+|+|+|+.+++++++|+.+ ||.|+ |+ |+.+++||+||++|+
T Consensus 144 ~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~ 223 (524)
T TIGR02348 144 QVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDK 223 (524)
T ss_pred HHHHHhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccC
Confidence 57788999999999999999987 66665 22 489999999999999
Q ss_pred CCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCC
Q 019867 47 KISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGS 126 (334)
Q Consensus 47 ~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~ 126 (334)
+|++++++.|+|+++.++|+||||++++|+++||++|+.|+++|++++++||+|++|++|+++|+|||++|||++++++.
T Consensus 224 ~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~ 303 (524)
T TIGR02348 224 KISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEEL 303 (524)
T ss_pred CcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccch----hHHHHHhhhcCCeEEEEEccCC
Q 019867 127 GMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLKVCGHG 202 (334)
Q Consensus 127 ~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~----~l~eR~~~lsg~~~tI~vgG~t 202 (334)
|++++++++++||+|+.|+++++++++++++++++.+..|+++|++++++++++ +|+||+++|+|+++||+|||+|
T Consensus 304 ~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t 383 (524)
T TIGR02348 304 GLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAAT 383 (524)
T ss_pred cCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 888999999999999999999999999999999999999999999999998777 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-
Q 019867 203 KAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSV- 281 (334)
Q Consensus 203 ~~~~~E~~~~i~DAl~~~r~a~~~gvVpGGGaael~~s~~L~~~~~~~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~- 281 (334)
+.+++|++|+++||+|++|+++++|||||||++|++++..|.+....++++++|+++|++||+.||++||+|||+|+.+
T Consensus 384 ~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v 463 (524)
T TIGR02348 384 ETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEGLKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVV 463 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999989999999999999999998433388999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 282 IDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 282 ~~kl~~~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
+++|++. +.++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 464 ~~~l~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 515 (524)
T TIGR02348 464 AEKVKES-KGNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTT 515 (524)
T ss_pred HHHHHhc-CCCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 9999876 345999999999999999999999999999999999999999986
No 11
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.6e-71 Score=560.00 Aligned_cols=332 Identities=46% Similarity=0.680 Sum_probs=316.3
Q ss_pred cEEEeecCCChhHhHHHHHHHhh-----------------------cceee-------ee-----eEEeecCeEEEeecc
Q 019867 2 KVGTTAANGDGEIGELIAKVFEK-----------------------GWEND-------LI-----TIFVLDGALVLIYDT 46 (334)
Q Consensus 2 ~va~isan~d~~~g~lia~a~~~-----------------------G~~~~-------~~-----~~~~l~~p~Ill~d~ 46 (334)
+||.+|+|+|+.+++++++|+.+ |+.|+ |. |+.+++||+||++|+
T Consensus 143 ~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~ 222 (520)
T cd03344 143 QVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDK 222 (520)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECC
Confidence 57889999999999999999977 56665 22 447899999999999
Q ss_pred CCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCC
Q 019867 47 KISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGS 126 (334)
Q Consensus 47 ~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~ 126 (334)
++++++++.|+|+.+.++|+||||++++|+++||++|..|++++.+++++||+|++|+.++++|+|||.+|||+++++++
T Consensus 223 ~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~ 302 (520)
T cd03344 223 KISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEL 302 (520)
T ss_pred CCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccch----hHHHHHhhhcCCeEEEEEccCC
Q 019867 127 GMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLKVCGHG 202 (334)
Q Consensus 127 ~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~----~l~eR~~~lsg~~~tI~vgG~t 202 (334)
+..++++++++||+|++|++++++++++++++++++++.|+++|++++++++++ +|+||+++|+|+++||+|||+|
T Consensus 303 ~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t 382 (520)
T cd03344 303 GLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGAT 382 (520)
T ss_pred cCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCc
Confidence 888999999999999999999999999999999999999999999999998777 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-
Q 019867 203 KAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSV- 281 (334)
Q Consensus 203 ~~~~~E~~~~i~DAl~~~r~a~~~gvVpGGGaael~~s~~L~~~~~~~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~- 281 (334)
+.+++|++|+++||+|++|+++++|||||||++|+++++.|.+++..++++|+|+++|++||+.||++||+|||+|+.+
T Consensus 383 ~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~v 462 (520)
T cd03344 383 EVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVV 462 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 9999999999999999999999989999999999999999999876788999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 282 IDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 282 ~~kl~~~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
+++|++... ++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus 463 i~~l~~~~~-~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~i 514 (520)
T cd03344 463 VEKVLESPD-GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTT 514 (520)
T ss_pred HHHHHhhcC-CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhh
Confidence 999987644 8999999999999999999999999999999999999999986
No 12
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2.3e-71 Score=563.40 Aligned_cols=331 Identities=37% Similarity=0.582 Sum_probs=313.8
Q ss_pred cEEEeecCCChhHhHHHHHHHhh-----------------------cceee-------ee-----eEEeecCeEEEeecc
Q 019867 2 KVGTTAANGDGEIGELIAKVFEK-----------------------GWEND-------LI-----TIFVLDGALVLIYDT 46 (334)
Q Consensus 2 ~va~isan~d~~~g~lia~a~~~-----------------------G~~~~-------~~-----~~~~l~~p~Ill~d~ 46 (334)
+||++|+|+|+.+|+|+++|+.+ |+.|+ |+ |+.+++||+||++|+
T Consensus 145 ~VA~ts~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~ 224 (529)
T CHL00093 145 QVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDK 224 (529)
T ss_pred HHHHHhccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcC
Confidence 68899999999999999999988 66666 43 566899999999999
Q ss_pred CCCCh-HHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCC
Q 019867 47 KISNS-NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGG 125 (334)
Q Consensus 47 ~i~~~-~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~ 125 (334)
+|... .++.|+|+.+.++|+||||++++|++++|++|+.|+.+|.++|++||+|++|++|+++|+|||++|||++++++
T Consensus 225 ~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~ 304 (529)
T CHL00093 225 KITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITED 304 (529)
T ss_pred CCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEeccc
Confidence 99987 88999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccch----hHHHHHhhhcCCeEEEEEccC
Q 019867 126 SGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KLKDRLAKLSGGYAVLKVCGH 201 (334)
Q Consensus 126 ~~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~----~l~eR~~~lsg~~~tI~vgG~ 201 (334)
.|.+++++++++||+|++|+++++++++++ .++++++..|+.+++++++.++++ +|+||+++|+|+++||+|||+
T Consensus 305 ~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~ 383 (529)
T CHL00093 305 AGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAA 383 (529)
T ss_pred ccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 888899999999999999999999999998 678999999999999999998777 999999999999999999999
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHcC-C-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 019867 202 GKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT-T-NSDQKIGVQIVQNALKMAAYLIASNAGVDG 279 (334)
Q Consensus 202 t~~~~~E~~~~i~DAl~~~r~a~~~gvVpGGGaael~~s~~L~~~~~-~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~ 279 (334)
|+.+++|++|+++||+|++|+++++|+|||||++|+++|..|++++. . ++++|+|+++|++||+.||++||+|||+|+
T Consensus 384 t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~ 463 (529)
T CHL00093 384 TETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNG 463 (529)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999865 3 889999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 280 SV-IDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 280 ~~-~~kl~~~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
.+ +++++.. +.++|||+.+|+++||++.|||||+.||+++|++|+++|++||||
T Consensus 464 ~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i 518 (529)
T CHL00093 464 SVIIEKVQEQ-DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTT 518 (529)
T ss_pred HHHHHHHHcc-CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 99 9999765 468999999999999999999999999999999999999999986
No 13
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-57 Score=458.02 Aligned_cols=315 Identities=35% Similarity=0.485 Sum_probs=283.8
Q ss_pred cEEEeecCCChhHhHHHHHHHhh----------------------------cceee---ee---eE-EeecCeEEEeecc
Q 019867 2 KVGTTAANGDGEIGELIAKVFEK----------------------------GWEND---LI---TI-FVLDGALVLIYDT 46 (334)
Q Consensus 2 ~va~isan~d~~~g~lia~a~~~----------------------------G~~~~---~~---~~-~~l~~p~Ill~d~ 46 (334)
+|+++++++|+.+|+++++||.+ ||.|| +. || .+++|||||++|+
T Consensus 147 ~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~ 226 (524)
T COG0459 147 SVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDK 226 (524)
T ss_pred eeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEcc
Confidence 68899999999999999999998 88888 22 88 8999999999999
Q ss_pred CCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCC
Q 019867 47 KISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGS 126 (334)
Q Consensus 47 ~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~ 126 (334)
+|+..+..+| ++...+.+.||+++++++.+++|..++.|.+++..++++|+.|+|++.++.+|+|++++||.++.+++.
T Consensus 227 ~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl 305 (524)
T COG0459 227 KLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDL 305 (524)
T ss_pred ccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhh
Confidence 9999999999 999889999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCcccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhc-cch----hHHHHHhhhcCCeEEEEEccC
Q 019867 127 GMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLS-TSD----KLKDRLAKLSGGYAVLKVCGH 201 (334)
Q Consensus 127 ~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~-~~~----~l~eR~~~lsg~~~tI~vgG~ 201 (334)
+ + ....+|.|..|.+.++.+....|.+ .+.++++. .++ ++++|.++ .|++|||+|||+
T Consensus 306 ~---~--~l~~~~ga~~v~~~~d~t~~~~G~~-----------~~~~ve~~~~~~~~~~~~~~~~~~-~~~~~tI~vrga 368 (524)
T COG0459 306 G---E--RLAKLGGAKIVSVLKDLTTIVLGEG-----------AAGLVEETKTGDYDMEKLQERKAK-AGGVATILVRGA 368 (524)
T ss_pred H---H--HHHHccCceEEeecccCceeecCcc-----------ccceEEEeeccchhhhhhhhhhhc-CCCeEEEEECCc
Confidence 4 1 5567888888888888777666643 02334443 222 88899888 899999999999
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHhhcC-ccccccHHHHHHHHHHHHHc-CCCh-hHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019867 202 GKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQ-TTNS-DQKIGVQIVQNALKMAAYLIASNAGVD 278 (334)
Q Consensus 202 t~~~~~E~~~~i~DAl~~~r~a~~~g-vVpGGGaael~~s~~L~~~~-~~~~-~~~~g~~~~~~AL~~p~~~La~NaG~d 278 (334)
|+.+++|++|+++||||++|+++++| +|||||++|++++..|++++ ..++ ++|+|+++|++||+.||++||+|||+|
T Consensus 369 te~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d 448 (524)
T COG0459 369 TEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLD 448 (524)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999988 99999999999999999983 3344 999999999999999999999999999
Q ss_pred HHH-HHHHHhcCC-CCeeEecCCCce-eccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 279 GSV-IDKLLEQDS-SDLGYNPARGNY-VDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 279 ~~~-~~kl~~~~~-~~~G~d~~~g~~-~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
|.+ +.+|++... +++|||+.+|++ .||++.|||||++||+++|++|+++|+++|||
T Consensus 449 ~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~ 507 (524)
T COG0459 449 PIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTI 507 (524)
T ss_pred HHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 999 999998754 559999999999 78999999999999999999999999999985
No 14
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.2e-55 Score=443.48 Aligned_cols=286 Identities=21% Similarity=0.323 Sum_probs=255.9
Q ss_pred cEEEeecCCC------hhHhHHHHHHHhh---------------------------------cceee--ee---eEEeec
Q 019867 2 KVGTTAANGD------GEIGELIAKVFEK---------------------------------GWEND--LI---TIFVLD 37 (334)
Q Consensus 2 ~va~isan~d------~~~g~lia~a~~~---------------------------------G~~~~--~~---~~~~l~ 37 (334)
+||++|.|++ +.+++++++|+.+ |+.|+ |. |+..++
T Consensus 148 ~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~ 227 (517)
T cd03343 148 KIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVE 227 (517)
T ss_pred HHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccC
Confidence 5788888876 8899999999966 33333 32 788999
Q ss_pred CeEEEeeccC-------------CCChHHHHHHhh-----------HHHHhCCcEEEEeccccccchhhhhhcccCCcce
Q 019867 38 GALVLIYDTK-------------ISNSNVIRQASL-----------PCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 93 (334)
Q Consensus 38 ~p~Ill~d~~-------------i~~~~~i~~~le-----------~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~ 93 (334)
||+|+++|++ +++++++.++++ .+.+.|.||||++++|++.|+++|..+ +
T Consensus 228 n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~------g 301 (517)
T cd03343 228 NAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKA------G 301 (517)
T ss_pred CCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------C
Confidence 9999999998 588888888655 788999999999999999999999854 4
Q ss_pred EEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHH
Q 019867 94 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQL 170 (334)
Q Consensus 94 v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~v~---~~~~~~i~~~~~~~~i~~ri~~l 170 (334)
+.+|+ +.++++|+|||.+|||+++++ ++++++++||+|++|++. +++++++++|+++
T Consensus 302 I~~v~-----~v~~~~l~~Ia~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~---------- 361 (517)
T cd03343 302 ILAVR-----RVKKSDMEKLARATGAKIVTN-----IDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP---------- 361 (517)
T ss_pred cEEEE-----eCCHHHHHHHHHHhCCEEecc-----hhhCChhhCCccceEEEEEECCeEEEEEEcCCCC----------
Confidence 55777 456899999999999999998 899999999999999876 7788999887643
Q ss_pred HHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhcC-ccccccHHHHHHHHHHHHHcCC
Q 019867 171 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 249 (334)
Q Consensus 171 ~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g-vVpGGGaael~~s~~L~~~~~~ 249 (334)
..+||+|||+|+.+++|.+|+++|||+++|+++++| +|||||++|++++..|++++..
T Consensus 362 ---------------------~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~ 420 (517)
T cd03343 362 ---------------------KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARS 420 (517)
T ss_pred ---------------------ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhc
Confidence 368999999999999999999999999999999887 9999999999999999988665
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHh---cCCCCeeEecCCCceeccccCCcccccccHHHHHHHH
Q 019867 250 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLE---QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKA 324 (334)
Q Consensus 250 -~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~---~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A 324 (334)
++++++++++|++||+.||++|++|||+|+.+ +.+|++ .++.++|||+.+|+++||++.|||||+.||+++|+.|
T Consensus 421 ~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A 500 (517)
T cd03343 421 VGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSA 500 (517)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHH
Confidence 88999999999999999999999999999999 999984 2567899999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 019867 325 TSMISLKNAI 334 (334)
Q Consensus 325 ~~~a~~iL~i 334 (334)
+++|++||||
T Consensus 501 ~e~a~~iL~i 510 (517)
T cd03343 501 TEAATMILRI 510 (517)
T ss_pred HHHHHHHHhh
Confidence 9999999986
No 15
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-55 Score=443.43 Aligned_cols=280 Identities=19% Similarity=0.248 Sum_probs=250.6
Q ss_pred cEEEeecCCC------hhHhHHHHHHHhh------------------------------cceee--ee---eEEeecCeE
Q 019867 2 KVGTTAANGD------GEIGELIAKVFEK------------------------------GWEND--LI---TIFVLDGAL 40 (334)
Q Consensus 2 ~va~isan~d------~~~g~lia~a~~~------------------------------G~~~~--~~---~~~~l~~p~ 40 (334)
+||++|+|++ +.+++++++|+.+ |+.|+ |. |+.+++||+
T Consensus 146 ~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~ 225 (484)
T cd03342 146 SVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAY 225 (484)
T ss_pred HHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCce
Confidence 6788889875 8899999999966 55565 43 789999999
Q ss_pred EEeeccCCCChHH-HHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCc
Q 019867 41 VLIYDTKISNSNV-IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGG 119 (334)
Q Consensus 41 Ill~d~~i~~~~~-i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~ 119 (334)
|+++|+++...+. +...+. .||||++++|++.++++|..|+ |++|+. .++++|+|||++|||
T Consensus 226 Ill~~~~le~~~~~~~~~~~------~~lvi~~~~I~~~al~~l~~~~------I~av~~-----~~~~~l~~ia~~tGa 288 (484)
T cd03342 226 ILTCNVSLEYEKTEVNSGFF------YSVVINQKGIDPPSLDMLAKEG------ILALRR-----AKRRNMERLTLACGG 288 (484)
T ss_pred EEEEeCCCCCCccccCcEEE------EEEEEeCCCccHHHHHHHHHCC------CeEEEe-----CCHHHHHHHHHHhCC
Confidence 9999999987654 222121 4799999999999999999873 888884 457899999999999
Q ss_pred EEeeCCCCCcccCCCCCCceeeeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHhhhccchhHHHHHhhhcCCeEEE
Q 019867 120 QVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVL 196 (334)
Q Consensus 120 ~ii~~~~~~~l~~~~~~~LG~a~~v---~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI 196 (334)
+++++ ++++++++||+|++| ++++++++++++|+++ +++||
T Consensus 289 ~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-------------------------------~~~tI 332 (484)
T cd03342 289 VAMNS-----VDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP-------------------------------KSCTI 332 (484)
T ss_pred EEecc-----cccCChhhCcccceEEEEEECCeEEEEEECCCCC-------------------------------cEEEE
Confidence 99998 999999999999999 5778889999987642 48999
Q ss_pred EEccCCHhHHHHHHHHHHHHHHHHHHHhhcC-ccccccHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHh
Q 019867 197 KVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASN 274 (334)
Q Consensus 197 ~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~N 274 (334)
+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++..|++++.. ++++|+++++|++||+.||++||+|
T Consensus 333 ~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~N 412 (484)
T cd03342 333 LIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAEN 412 (484)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887 9999999999999999998665 8899999999999999999999999
Q ss_pred cCCCHHH-HHHHHhc---CCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 275 AGVDGSV-IDKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 275 aG~d~~~-~~kl~~~---~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
||+|+.+ +.+|++. ++.++|||+.+|+++||++.|||||+.||+++|++|+++|++||||
T Consensus 413 aG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~I 476 (484)
T cd03342 413 SGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLV 476 (484)
T ss_pred cCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999 9999753 5667999999999999999999999999999999999999999997
No 16
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.2e-54 Score=440.91 Aligned_cols=286 Identities=20% Similarity=0.307 Sum_probs=255.7
Q ss_pred cEEEeecCCC-------hhHhHHHHHHHhh----------------------------------cceee--ee---eEEe
Q 019867 2 KVGTTAANGD-------GEIGELIAKVFEK----------------------------------GWEND--LI---TIFV 35 (334)
Q Consensus 2 ~va~isan~d-------~~~g~lia~a~~~----------------------------------G~~~~--~~---~~~~ 35 (334)
+||.+|.|++ +.+++++++|+.+ |+.|+ |. |+.+
T Consensus 149 ~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~ 228 (519)
T TIGR02339 149 KVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKR 228 (519)
T ss_pred HHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccc
Confidence 4677777765 7799999999954 44444 33 7899
Q ss_pred ecCeEEEeeccC-------------CCChHHHHHHhh-----------HHHHhCCcEEEEeccccccchhhhhhcccCCc
Q 019867 36 LDGALVLIYDTK-------------ISNSNVIRQASL-----------PCMMQGQSLLVVAEDVENEVLGDIATDFTCTT 91 (334)
Q Consensus 36 l~~p~Ill~d~~-------------i~~~~~i~~~le-----------~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~ 91 (334)
++||+|+++|++ |++++++.++++ .+++.|.||||++++|++.++++|..+
T Consensus 229 i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~----- 303 (519)
T TIGR02339 229 VKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA----- 303 (519)
T ss_pred cCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC-----
Confidence 999999999998 788999999887 799999999999999999999999754
Q ss_pred ceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEEEec---ceEEEEcCCCChhhHHHHHH
Q 019867 92 EKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATM---DNVVIIGGSGELVDIQERCE 168 (334)
Q Consensus 92 ~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~v~~---~~~~~i~~~~~~~~i~~ri~ 168 (334)
++.+|+ +.++++|+|||++|||+++++ ++++++++||+|++|++.+ ++++++++|+++
T Consensus 304 -gI~~v~-----~v~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-------- 364 (519)
T TIGR02339 304 -GILAVR-----RVKKSDIEKLARATGAKIVSS-----IKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP-------- 364 (519)
T ss_pred -CCEEEe-----cCCHHHHHHHHHHhCCEEeCc-----hhhCChhhccCCceEEEEEECCeEEEEEEcCCCC--------
Confidence 455566 556899999999999999998 8899999999999999776 788999887532
Q ss_pred HHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhcC-ccccccHHHHHHHHHHHHHc
Q 019867 169 QLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQ 247 (334)
Q Consensus 169 ~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g-vVpGGGaael~~s~~L~~~~ 247 (334)
..+||+|||+|+.+++|.+|+++||+|++|+++++| +|||||++|+++|..|++++
T Consensus 365 -----------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~ 421 (519)
T TIGR02339 365 -----------------------KAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYA 421 (519)
T ss_pred -----------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHh
Confidence 378999999999999999999999999999999887 99999999999999999986
Q ss_pred CC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHh---cCCCCeeEecCCCceeccccCCcccccccHHHHHH
Q 019867 248 TT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLE---QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFA 322 (334)
Q Consensus 248 ~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~---~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~ 322 (334)
.. ++++++++++|++||+.||++||+|||+|+.+ +.+|+. .++.++|||+.+|+++||++.|||||+.||+++|+
T Consensus 422 ~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~ 501 (519)
T TIGR02339 422 RKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIK 501 (519)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHH
Confidence 65 78999999999999999999999999999999 999974 25578999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 019867 323 KATSMISLKNAI 334 (334)
Q Consensus 323 ~A~~~a~~iL~i 334 (334)
.|+++|++||||
T Consensus 502 ~A~e~a~~iL~i 513 (519)
T TIGR02339 502 SATEAATMILRI 513 (519)
T ss_pred HHHHHHHHHHhH
Confidence 999999999986
No 17
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.2e-54 Score=435.40 Aligned_cols=292 Identities=20% Similarity=0.270 Sum_probs=256.6
Q ss_pred cEEEeecC------CChhHhHHHHHHHhh--------------------------------cceee--ee----eEEeec
Q 019867 2 KVGTTAAN------GDGEIGELIAKVFEK--------------------------------GWEND--LI----TIFVLD 37 (334)
Q Consensus 2 ~va~isan------~d~~~g~lia~a~~~--------------------------------G~~~~--~~----~~~~l~ 37 (334)
+||++|.| +++.+|+++++|+.+ |+.|+ |. ||..+.
T Consensus 141 ~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~ 220 (515)
T cd03338 141 KSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIE 220 (515)
T ss_pred HHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCcccc
Confidence 57788888 678899999999976 44454 33 277899
Q ss_pred CeEEEeeccCC-------------CCh-----------HHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcce
Q 019867 38 GALVLIYDTKI-------------SNS-----------NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 93 (334)
Q Consensus 38 ~p~Ill~d~~i-------------~~~-----------~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~ 93 (334)
||+|+++++++ +++ +++.++++.+++.|.||||++++|++++++.++.|.+++ .+
T Consensus 221 n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~ 299 (515)
T cd03338 221 KAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK-LK 299 (515)
T ss_pred CCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHH-CC
Confidence 99999987753 333 456777899999999999999999888888777777775 88
Q ss_pred EEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEEEec---ceEEEEcCCCChhhHHHHHHHH
Q 019867 94 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATM---DNVVIIGGSGELVDIQERCEQL 170 (334)
Q Consensus 94 v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~v~~---~~~~~i~~~~~~~~i~~ri~~l 170 (334)
|++|+ +.++++|+|||++|||+++++ ++++++++||+|+.|++.+ ++++++.++..
T Consensus 300 I~av~-----~~~~~~LerIa~~tGa~ii~s-----l~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~----------- 358 (515)
T cd03338 300 IMVVK-----DIEREEIEFICKTIGCKPVAS-----IDHFTEDKLGSADLVEEVSLGDGKIVKITGVKN----------- 358 (515)
T ss_pred ceEEe-----cCCHHHHHHHHHHHCCEEecc-----cccCCHhhCCCCceEEEEEECCeEEEEEEecCC-----------
Confidence 99999 567899999999999999998 8999999999999998754 35677776531
Q ss_pred HHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhcC-ccccccHHHHHHHHHHHHHcCC
Q 019867 171 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 249 (334)
Q Consensus 171 ~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g-vVpGGGaael~~s~~L~~~~~~ 249 (334)
++++|||+|||+|+.+++|++|+++||+|++|+++++| +|||||++|++++..|++++..
T Consensus 359 -------------------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~ 419 (515)
T cd03338 359 -------------------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWART 419 (515)
T ss_pred -------------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhcc
Confidence 25789999999999999999999999999999999887 9999999999999999998665
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHhc---CCCCeeEecCCCceeccccCCcccccccHHHHHHHH
Q 019867 250 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKA 324 (334)
Q Consensus 250 -~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~~---~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A 324 (334)
++++|+|+++|++||+.||++||+|||+|+.+ +.+|++. ++.++|||+.+|+++||++.|||||+.||+++|++|
T Consensus 420 ~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A 499 (515)
T cd03338 420 LTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLA 499 (515)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHH
Confidence 78999999999999999999999999999999 9999763 566899999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 019867 325 TSMISLKNAI 334 (334)
Q Consensus 325 ~~~a~~iL~i 334 (334)
+++|++||||
T Consensus 500 ~~~a~~iL~I 509 (515)
T cd03338 500 TETVRMILKI 509 (515)
T ss_pred HHHHHHHhcc
Confidence 9999999997
No 18
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-53 Score=433.74 Aligned_cols=286 Identities=19% Similarity=0.239 Sum_probs=247.6
Q ss_pred cEEEeecC------CChhHhHHHHHHHhh------------------------------cceee--ee---eEEeecCeE
Q 019867 2 KVGTTAAN------GDGEIGELIAKVFEK------------------------------GWEND--LI---TIFVLDGAL 40 (334)
Q Consensus 2 ~va~isan------~d~~~g~lia~a~~~------------------------------G~~~~--~~---~~~~l~~p~ 40 (334)
+||.+|.| +++.+++++++|+.+ |+.|+ |. |+.+++||+
T Consensus 150 ~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~ 229 (531)
T TIGR02347 150 NVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAY 229 (531)
T ss_pred HHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCce
Confidence 34555554 488999999999977 44444 33 789999999
Q ss_pred EEeeccCCCCh-------------HH-----------HHHHhhHHHHhCC-------c---EEEEeccccccchhhhhhc
Q 019867 41 VLIYDTKISNS-------------NV-----------IRQASLPCMMQGQ-------S---LLVVAEDVENEVLGDIATD 86 (334)
Q Consensus 41 Ill~d~~i~~~-------------~~-----------i~~~le~i~~~~~-------~---llIia~~i~~~aL~~L~~n 86 (334)
|+++|+++... ++ +..+++.+.+.|+ + ||+++++|++.++++|..+
T Consensus 230 Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~ 309 (531)
T TIGR02347 230 ILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKE 309 (531)
T ss_pred EEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHC
Confidence 99999986533 22 2334566666541 3 8888999999999999975
Q ss_pred ccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEE---EEecceEEEEcCCCChhhH
Q 019867 87 FTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVIIGGSGELVDI 163 (334)
Q Consensus 87 ~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v---~v~~~~~~~i~~~~~~~~i 163 (334)
+|++++. .++++|+|||++|||+++++ ++++++++||+|++| ++++++++++++|+++
T Consensus 310 ------~I~~i~r-----v~~~~le~ia~~tGa~~i~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~--- 370 (531)
T TIGR02347 310 ------GIMALRR-----AKRRNMERLTLACGGEALNS-----VEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP--- 370 (531)
T ss_pred ------CceEEcc-----CCHHHHHHHHHHhCCEEecc-----cccCCccccccceEEEEEEECCeEEEEEEcCCCC---
Confidence 5677773 34789999999999999998 999999999999999 6778889999887643
Q ss_pred HHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhcC-ccccccHHHHHHHHH
Q 019867 164 QERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKE 242 (334)
Q Consensus 164 ~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g-vVpGGGaael~~s~~ 242 (334)
++|||+|||+|+.+++|++|+++||+|++|+++++| +|||||++|++++..
T Consensus 371 ----------------------------~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~ 422 (531)
T TIGR02347 371 ----------------------------KSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCH 422 (531)
T ss_pred ----------------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHH
Confidence 379999999999999999999999999999999876 999999999999999
Q ss_pred HHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHhc---CCCCeeEecCCCceeccccCCcccccccH
Q 019867 243 LDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHV 317 (334)
Q Consensus 243 L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~~---~~~~~G~d~~~g~~~dm~~~GIiDp~~v~ 317 (334)
|++++.. ++++++|+++|++||+.||++||+|||+|+.+ +.+|++. ++.++|||+.+|+++||++.|||||+.||
T Consensus 423 l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk 502 (531)
T TIGR02347 423 LKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVK 502 (531)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHH
Confidence 9998665 88999999999999999999999999999999 9999764 44679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 019867 318 PSEFAKATSMISLKNAI 334 (334)
Q Consensus 318 ~~al~~A~~~a~~iL~i 334 (334)
+++|++|+++|++||||
T Consensus 503 ~~al~~A~e~a~~iLrI 519 (531)
T TIGR02347 503 KQLIQSATVIASQLLLV 519 (531)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 99999999999999997
No 19
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-53 Score=433.29 Aligned_cols=282 Identities=17% Similarity=0.236 Sum_probs=246.4
Q ss_pred ChhHhHHHHHHHhh----------------------------------cceee--ee---eEEeecCeEEEeeccCCCC-
Q 019867 11 DGEIGELIAKVFEK----------------------------------GWEND--LI---TIFVLDGALVLIYDTKISN- 50 (334)
Q Consensus 11 d~~~g~lia~a~~~----------------------------------G~~~~--~~---~~~~l~~p~Ill~d~~i~~- 50 (334)
++.+++++++|+.+ |+.|+ |. |+.+++||+|+++|+++..
T Consensus 157 ~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~ 236 (527)
T cd03335 157 SDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKT 236 (527)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCC
Confidence 48899999999855 44444 33 8899999999999998754
Q ss_pred ------------hHH-----------HHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchh
Q 019867 51 ------------SNV-----------IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 107 (334)
Q Consensus 51 ------------~~~-----------i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~ 107 (334)
+++ +.++++.+.+.|.||||++++|++.|+++|..+ ++.+++ +.++
T Consensus 237 ~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~------~I~~v~-----~v~~ 305 (527)
T cd03335 237 KMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEA------GAMAVR-----RVKK 305 (527)
T ss_pred ccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEE-----eCCH
Confidence 222 335677888999999999999999999999975 567777 5568
Q ss_pred hHHHHHHhHcCcEEeeCCCCC-cccCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhccchhHH
Q 019867 108 AIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLK 183 (334)
Q Consensus 108 ~~Ledia~~tG~~ii~~~~~~-~l~~~~~~~LG~a~~v~---v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~l~ 183 (334)
++|+|||.+|||+++++..++ ..+++++++||+|++|+ +++++++++++|++
T Consensus 306 ~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~------------------------ 361 (527)
T cd03335 306 EDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKK------------------------ 361 (527)
T ss_pred HHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCC------------------------
Confidence 899999999999999984443 22445667899999998 77888999988753
Q ss_pred HHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhcC-ccccccHHHHHHHHHHHHHcCC-ChhHHHHHHHHH
Q 019867 184 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQ 261 (334)
Q Consensus 184 eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~~~~g~~~~~ 261 (334)
+++|||+|||+|+.+++|.+|+++||+|++++++++| +|||||++|++++..|++++.. ++++++++++|+
T Consensus 362 -------~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a 434 (527)
T cd03335 362 -------RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFA 434 (527)
T ss_pred -------CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4589999999999999999999999999999999887 9999999999999999998665 889999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHH-HHHHHhc---C--------CCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHH
Q 019867 262 NALKMAAYLIASNAGVDGSV-IDKLLEQ---D--------SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMIS 329 (334)
Q Consensus 262 ~AL~~p~~~La~NaG~d~~~-~~kl~~~---~--------~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~ 329 (334)
+||+.||++||+|||+|+.+ +.+|++. + ++++|||+.+|+++||++.|||||+.||+++|+.|+++|+
T Consensus 435 ~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~ 514 (527)
T cd03335 435 EALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAI 514 (527)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 9999763 2 4579999999999999999999999999999999999999
Q ss_pred HHhcC
Q 019867 330 LKNAI 334 (334)
Q Consensus 330 ~iL~i 334 (334)
+||||
T Consensus 515 ~iLrI 519 (527)
T cd03335 515 TILRI 519 (527)
T ss_pred HHHhh
Confidence 99997
No 20
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5e-53 Score=430.42 Aligned_cols=291 Identities=18% Similarity=0.231 Sum_probs=251.5
Q ss_pred cEEEeecC------CChhHhHHHHHHHhh----------------------------------cceee--ee---eEEee
Q 019867 2 KVGTTAAN------GDGEIGELIAKVFEK----------------------------------GWEND--LI---TIFVL 36 (334)
Q Consensus 2 ~va~isan------~d~~~g~lia~a~~~----------------------------------G~~~~--~~---~~~~l 36 (334)
+||.+|.| +|+.+++++++|+.+ |+.|+ |. |+.++
T Consensus 146 ~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~ 225 (536)
T TIGR02340 146 NVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRI 225 (536)
T ss_pred HHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCccee
Confidence 45556655 789999999999965 34443 33 88999
Q ss_pred cCeEEEeeccCCCChH------------------------HHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcc
Q 019867 37 DGALVLIYDTKISNSN------------------------VIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTE 92 (334)
Q Consensus 37 ~~p~Ill~d~~i~~~~------------------------~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~ 92 (334)
+||+|+++|+++...+ .+.+.++.+++.|.+|||++++|++.++++|..+
T Consensus 226 ~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~------ 299 (536)
T TIGR02340 226 KKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEA------ 299 (536)
T ss_pred cCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------
Confidence 9999999999875443 2335677788899999999999999999999976
Q ss_pred eEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCC-cccCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHH
Q 019867 93 KVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDIQERCE 168 (334)
Q Consensus 93 ~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~-~l~~~~~~~LG~a~~v~---v~~~~~~~i~~~~~~~~i~~ri~ 168 (334)
++.+++ +.++++|+|||++|||+++++..++ ..+++++++||+|++|+ +++++++++++++++
T Consensus 300 ~I~~i~-----rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-------- 366 (536)
T TIGR02340 300 GAMGVR-----RCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR-------- 366 (536)
T ss_pred CcEEEe-----cCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC--------
Confidence 466666 4458899999999999999985444 33556778899999999 788899999887542
Q ss_pred HHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhcC-ccccccHHHHHHHHHHHHHc
Q 019867 169 QLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQ 247 (334)
Q Consensus 169 ~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g-vVpGGGaael~~s~~L~~~~ 247 (334)
++|||+|||+|+.+++|++|+++||+|++|+++++| +|||||++|++++..|+++.
T Consensus 367 -----------------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~ 423 (536)
T TIGR02340 367 -----------------------KSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFA 423 (536)
T ss_pred -----------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHh
Confidence 389999999999999999999999999999999887 99999999999999999886
Q ss_pred CC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHhc---C--------CCCeeEecCCCceeccccCCccccc
Q 019867 248 TT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLEQ---D--------SSDLGYNPARGNYVDMFKCGDVDPL 314 (334)
Q Consensus 248 ~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~~---~--------~~~~G~d~~~g~~~dm~~~GIiDp~ 314 (334)
.. ++++++|+++|++||+.||++||+|||+|+.+ +.+|++. + +.++|||+.+|+++||++.|||||+
T Consensus 424 ~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~ 503 (536)
T TIGR02340 424 TTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPA 503 (536)
T ss_pred hhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecH
Confidence 65 78999999999999999999999999999999 9999762 1 3479999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcC
Q 019867 315 KHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 315 ~v~~~al~~A~~~a~~iL~i 334 (334)
.||.++|+.|+++|++||+|
T Consensus 504 ~~k~~~l~~A~e~a~~iL~I 523 (536)
T TIGR02340 504 VSKVKSLKFATEAAITILRI 523 (536)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999997
No 21
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.7e-53 Score=429.73 Aligned_cols=282 Identities=18% Similarity=0.271 Sum_probs=246.7
Q ss_pred eecC----CChhHhHHHHHHHhh----------------cceee-------ee--------eEEeecCeEEEeeccCCC-
Q 019867 6 TAAN----GDGEIGELIAKVFEK----------------GWEND-------LI--------TIFVLDGALVLIYDTKIS- 49 (334)
Q Consensus 6 isan----~d~~~g~lia~a~~~----------------G~~~~-------~~--------~~~~l~~p~Ill~d~~i~- 49 (334)
++++ +++.+++++++|+.+ |..++ |+ |+.+++||+|+++|+++.
T Consensus 157 lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le~ 236 (517)
T cd03336 157 LSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDT 236 (517)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccceEEEeeEEEecccCCCCCCeeccccEEEEecCCCc
Confidence 6666 789999999999977 33333 22 588999999999999764
Q ss_pred -------------ChHHHHH-----------HhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccc
Q 019867 50 -------------NSNVIRQ-----------ASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAED 105 (334)
Q Consensus 50 -------------~~~~i~~-----------~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~ 105 (334)
+++++.+ .++.+.+.|.+++++++.|++.++++|..+ +|++|+.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~------~I~av~~v~---- 306 (517)
T cd03336 237 DKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA------GIMAIEHAD---- 306 (517)
T ss_pred ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CcEEEecCC----
Confidence 5665533 356788899999999999999999999864 688999886
Q ss_pred hhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHhhhccchhH
Q 019867 106 RKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKL 182 (334)
Q Consensus 106 r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~v---~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~l 182 (334)
+++|+|||.+|||+++++ ++++++++||+|+.|+. ++++++++.+|.
T Consensus 307 -~~~L~rIa~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~------------------------ 356 (517)
T cd03336 307 -FDGVERLALVTGGEIAST-----FDHPELVKLGTCKLIEEIMIGEDKLIRFSGVA------------------------ 356 (517)
T ss_pred -HHHHHHHHHHhCCEEecc-----cCCCCcccccccceEEEEEECCeEEEEEEccC------------------------
Confidence 567999999999999998 89999999999999973 234555555543
Q ss_pred HHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhcC-ccccccHHHHHHHHHHHHHcCC-ChhHHHHHHHH
Q 019867 183 KDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIV 260 (334)
Q Consensus 183 ~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~~~~g~~~~ 260 (334)
.+++|||+|||+|+.+++|.+|+++||+|++|+++++| +|||||++|++++..|++++.. ++++++++++|
T Consensus 357 -------~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~ 429 (517)
T cd03336 357 -------AGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAF 429 (517)
T ss_pred -------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHH
Confidence 14689999999999999999999999999999999875 9999999999999999998665 88999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHH-HHHHHhc---CCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 261 QNALKMAAYLIASNAGVDGSV-IDKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 261 ~~AL~~p~~~La~NaG~d~~~-~~kl~~~---~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
++||+.||++||+|||+|+.+ +.+|++. ++.++|||+.+|+++||++.|||||+.||+++|+.|+++|++||+|
T Consensus 430 a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 507 (517)
T cd03336 430 AKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRV 507 (517)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999 9999863 5678999999999999999999999999999999999999999986
No 22
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.5e-53 Score=428.83 Aligned_cols=263 Identities=20% Similarity=0.236 Sum_probs=233.9
Q ss_pred cceee--ee---eEEeecCeEEEeeccC-------------CCChHH-----------HHHHhhHHHHhCCcEEEEeccc
Q 019867 25 GWEND--LI---TIFVLDGALVLIYDTK-------------ISNSNV-----------IRQASLPCMMQGQSLLVVAEDV 75 (334)
Q Consensus 25 G~~~~--~~---~~~~l~~p~Ill~d~~-------------i~~~~~-----------i~~~le~i~~~~~~llIia~~i 75 (334)
|+.|+ |. |+..++||+|++++++ ++++++ +.++++.+.+.|+||||++++|
T Consensus 218 Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I 297 (526)
T cd03339 218 GIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGF 297 (526)
T ss_pred eEEEecccCCCCCCceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence 55555 44 7889999999999963 566666 7778899999999999999999
Q ss_pred cccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEEE-----ecce
Q 019867 76 ENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA-----TMDN 150 (334)
Q Consensus 76 ~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~v-----~~~~ 150 (334)
++.|+++|..|+ +.+|+.++ +++|+|||++|||+++++ ++++++++||+|+.|+. +++.
T Consensus 298 ~~~al~~L~~~~------I~av~~v~-----~~~LerIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig~~~~~ 361 (526)
T cd03339 298 DDEANHLLLQNG------LPAVRWVG-----GVEIELIAIATGGRIVPR-----FEDLSPEKLGKAGLVREISFGTTKDK 361 (526)
T ss_pred CHHHHHHHHHCC------CEEEEeCC-----HHHHHHHHHHhCCEEecc-----hhhCChhhcccCceEEEEEecCCCcE
Confidence 999999999875 44788653 677999999999999998 99999999999999973 2457
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhcC-cc
Q 019867 151 VVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IV 229 (334)
Q Consensus 151 ~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g-vV 229 (334)
++++++|++ .+++||+|||+|+.+++|.||+++|||+++|+++++| +|
T Consensus 362 ~~~i~g~~~-------------------------------~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vv 410 (526)
T cd03339 362 MLVIEGCPN-------------------------------SKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIV 410 (526)
T ss_pred EEEEECCCC-------------------------------CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 888888753 2489999999999999999999999999999999875 99
Q ss_pred ccccHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHhc----CCCCeeEecCCCcee
Q 019867 230 PGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLEQ----DSSDLGYNPARGNYV 303 (334)
Q Consensus 230 pGGGaael~~s~~L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~~----~~~~~G~d~~~g~~~ 303 (334)
||||++|++++..|++++.. ++++++|+++|++||+.||++||+|||+|+.+ +.+|+.. ++.++|||+.+|+++
T Consensus 411 pGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~ 490 (526)
T cd03339 411 YGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTN 490 (526)
T ss_pred eCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccC
Confidence 99999999999999998665 78999999999999999999999999999999 9999732 356799999999999
Q ss_pred ccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 304 DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 304 dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
||++.|||||+.||+++|+.|+++|++||||
T Consensus 491 d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 521 (526)
T cd03339 491 DMKEQKVFETLISKKQQILLATQVVKMILKI 521 (526)
T ss_pred chhhcCceecHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999997
No 23
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.7e-53 Score=427.40 Aligned_cols=269 Identities=20% Similarity=0.291 Sum_probs=237.0
Q ss_pred cceee--ee----eEEeecCeEEEeeccCC-------------CCh-----------HHHHHHhhHHHHhCCcEEEEecc
Q 019867 25 GWEND--LI----TIFVLDGALVLIYDTKI-------------SNS-----------NVIRQASLPCMMQGQSLLVVAED 74 (334)
Q Consensus 25 G~~~~--~~----~~~~l~~p~Ill~d~~i-------------~~~-----------~~i~~~le~i~~~~~~llIia~~ 74 (334)
|+.|+ |. ||..++||+|+++++++ +++ +++.++++.+++.|+||||++++
T Consensus 203 Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~ 282 (517)
T TIGR02342 203 GLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKS 282 (517)
T ss_pred eEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 55665 33 58999999999998854 232 34677888999999999999999
Q ss_pred ccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEE-Ee--cceE
Q 019867 75 VENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI-AT--MDNV 151 (334)
Q Consensus 75 i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~-v~--~~~~ 151 (334)
|++++++.++.|.+.+ .+|++|+ +.++++|+|||.+|||+++++ ++++++++||+|+.|+ ++ ++.+
T Consensus 283 I~~~~l~~l~~~~l~~-~~I~av~-----~v~~~~LerIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~~~~~~~ 351 (517)
T TIGR02342 283 ILRDAVNDLALHFLAK-MKIMVVK-----DIEREEVEFICKTIGCKPIAS-----IDHFTADKLGSAELVEEVTTDGGKI 351 (517)
T ss_pred cccccccHHHHHHHhh-CCceEEe-----cCCHHHHHHHHHHHCCEEEcc-----hhhcCcccCcCCceEEEEEECCeEE
Confidence 9888888777777776 8899999 556899999999999999998 8999999999999998 44 3345
Q ss_pred EEEcCCCChhhHHHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhc-Cccc
Q 019867 152 VIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVP 230 (334)
Q Consensus 152 ~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~-gvVp 230 (334)
+++.++.. +++++||+|||+|+.+++|.+|+++||++++|+++++ |+||
T Consensus 352 ~~i~~~~~------------------------------~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~Vp 401 (517)
T TIGR02342 352 IKITGIQN------------------------------AGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIP 401 (517)
T ss_pred EEEEccCC------------------------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 56666531 3579999999999999999999999999999999975 8999
Q ss_pred cccHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHhc---CCCCeeEecCCCceecc
Q 019867 231 GSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLEQ---DSSDLGYNPARGNYVDM 305 (334)
Q Consensus 231 GGGaael~~s~~L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~~---~~~~~G~d~~~g~~~dm 305 (334)
|||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.+ +.+|++. ++.++|||+.+|+++||
T Consensus 402 GGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~ 481 (517)
T TIGR02342 402 GGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDM 481 (517)
T ss_pred CcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccch
Confidence 9999999999999998665 88999999999999999999999999999999 9999863 56689999999999999
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 306 FKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 306 ~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
++.|||||+.||+++|++|+++|++||||
T Consensus 482 ~~~gI~dp~~vk~~ai~~A~e~a~~iL~i 510 (517)
T TIGR02342 482 LEEEVLQPLLVTTSAVTLASETVRMILKI 510 (517)
T ss_pred hhccceEcHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999997
No 24
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.3e-52 Score=419.66 Aligned_cols=269 Identities=17% Similarity=0.239 Sum_probs=241.7
Q ss_pred eecCCChhHhHHHHHHHhh-------------------------------cceee--ee-eEEeecCeEEEeeccCCCCh
Q 019867 6 TAANGDGEIGELIAKVFEK-------------------------------GWEND--LI-TIFVLDGALVLIYDTKISNS 51 (334)
Q Consensus 6 isan~d~~~g~lia~a~~~-------------------------------G~~~~--~~-~~~~l~~p~Ill~d~~i~~~ 51 (334)
.++++++.+++++++|+.+ |+.|+ +. ++.+++||+|+++|+++..
T Consensus 152 k~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~~~~~~~~n~~Ili~~~~Le~- 230 (472)
T cd03341 152 KQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPEGSVKRVKKAKVAVFSCPFDI- 230 (472)
T ss_pred cccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccCCCceeccCCcEEEEeccccC-
Confidence 3445789999999999976 33333 22 5689999999999999887
Q ss_pred HHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCccc
Q 019867 52 NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNST 131 (334)
Q Consensus 52 ~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~ 131 (334)
|+||||++++|++.++++|.. .+|++|++|+ +++|+|||.+|||+++++ ++
T Consensus 231 -------------g~~lvi~~~~I~d~al~~l~~------~~I~av~~~~-----~~~Le~Ia~~tGa~ii~~-----~~ 281 (472)
T cd03341 231 -------------GVNVIVAGGSVGDLALHYCNK------YGIMVIKINS-----KFELRRLCRTVGATPLPR-----LG 281 (472)
T ss_pred -------------CCeEEEECCCCCHHHHHHHHH------CCeEEEEeCC-----HHHHHHHHHHhCCEEecc-----cc
Confidence 889999999999999999764 5799999887 678999999999999999 88
Q ss_pred CCCCCCceeeeEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHH
Q 019867 132 YFVPLKLGSCKRVIATM---DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVRE 208 (334)
Q Consensus 132 ~~~~~~LG~a~~v~v~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E 208 (334)
++++++||+|++|++.+ ++++++.++++ .++++||+|||+|+.+++|
T Consensus 282 ~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------------~~~~~TI~lrG~t~~~l~E 331 (472)
T cd03341 282 APTPEEIGYCDSVYVEEIGDTKVVVFRQNKE------------------------------DSKIATIVLRGATQNILDD 331 (472)
T ss_pred cCCHhHCCCceEEEEEEECCeeEEEEEccCC------------------------------CCCeEEEEEECCCHHHHHH
Confidence 89999999999999776 78888887642 1468999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcC-ccccccHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHH
Q 019867 209 KKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKL 285 (334)
Q Consensus 209 ~~~~i~DAl~~~r~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl 285 (334)
.||+++||++++|+++++| +|||||++|++++..|++++.. ++++++|+++|++||+.||++|++|||+||.+ +.+|
T Consensus 332 ~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l 411 (472)
T cd03341 332 VERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSEL 411 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 9999999999999999887 9999999999999999988655 78999999999999999999999999999999 9999
Q ss_pred Hh---cCCCCeeEecCCC--ceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 286 LE---QDSSDLGYNPARG--NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 286 ~~---~~~~~~G~d~~~g--~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
+. +++.++|||+.+| +++||++.|||||+.||+++|++|+++|++||||
T Consensus 412 ~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 465 (472)
T cd03341 412 YAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRV 465 (472)
T ss_pred HHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhhh
Confidence 75 3456899999999 9999999999999999999999999999999996
No 25
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.1e-52 Score=423.13 Aligned_cols=263 Identities=19% Similarity=0.201 Sum_probs=234.0
Q ss_pred cceee--ee---eEEeecCeEEEeeccC-------------CCChHHH-----------HHHhhHHHHhCCcEEEEeccc
Q 019867 25 GWEND--LI---TIFVLDGALVLIYDTK-------------ISNSNVI-----------RQASLPCMMQGQSLLVVAEDV 75 (334)
Q Consensus 25 G~~~~--~~---~~~~l~~p~Ill~d~~-------------i~~~~~i-----------~~~le~i~~~~~~llIia~~i 75 (334)
|+.|+ |. |+..++||+|++++++ +++++++ .++++.+.+.|+||||++++|
T Consensus 222 Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I 301 (532)
T TIGR02343 222 GIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGF 301 (532)
T ss_pred eEEEecCcCCCCCCeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 55555 33 7889999999999962 6677766 778999999999999999999
Q ss_pred cccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEEEe-----cce
Q 019867 76 ENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT-----MDN 150 (334)
Q Consensus 76 ~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~v~-----~~~ 150 (334)
++.++++|..|+ +.+|+.++ +++|+|||++|||+++++ ++++++++||+|++|+.. .++
T Consensus 302 ~~~al~~L~~~~------i~~v~~~~-----~~~l~~Ia~~tGa~~i~~-----l~~~~~~~LG~a~~v~~~~ig~~~~~ 365 (532)
T TIGR02343 302 DDEANHLLLQND------LPAVRWVG-----GHELELIAIATGGRIVPR-----FEELSEDKLGKAGLVREISFGTTKDR 365 (532)
T ss_pred cHHHHHHHHHCC------cEEEEcCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCcccceEEEEEecCCcce
Confidence 999999999875 44677543 677999999999999998 999999999999999832 247
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhc-Ccc
Q 019867 151 VVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIV 229 (334)
Q Consensus 151 ~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~-gvV 229 (334)
++++++|+++ +++||+|||+|+.+++|.||+++||++++|+++++ ++|
T Consensus 366 ~~~i~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vv 414 (532)
T TIGR02343 366 MLVIEQCKNS-------------------------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIV 414 (532)
T ss_pred EEEEECCCCC-------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 8888887643 37999999999999999999999999999999975 899
Q ss_pred ccccHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHhc----CCCCeeEecCCCcee
Q 019867 230 PGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLEQ----DSSDLGYNPARGNYV 303 (334)
Q Consensus 230 pGGGaael~~s~~L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~~----~~~~~G~d~~~g~~~ 303 (334)
||||++|++++..|++++.. ++++++++++|++||+.||++||+|||+|+.+ +.+|++. ++.++|||+.+|+++
T Consensus 415 pGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~ 494 (532)
T TIGR02343 415 YGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTN 494 (532)
T ss_pred eCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccc
Confidence 99999999999999998665 78899999999999999999999999999999 9999752 356799999999999
Q ss_pred ccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 304 DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 304 dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
||++.|||||+.||+++|+.|+++|++||||
T Consensus 495 d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~i 525 (532)
T TIGR02343 495 DMKEQGVFETLIGKKQQIQLATQLVRMILKI 525 (532)
T ss_pred cchhccCeecHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999986
No 26
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.4e-52 Score=421.66 Aligned_cols=280 Identities=16% Similarity=0.202 Sum_probs=246.5
Q ss_pred CCChhHhHHHHHHHhh-------------------------------cceee--ee-eEEeecCeEEEeeccC-------
Q 019867 9 NGDGEIGELIAKVFEK-------------------------------GWEND--LI-TIFVLDGALVLIYDTK------- 47 (334)
Q Consensus 9 n~d~~~g~lia~a~~~-------------------------------G~~~~--~~-~~~~l~~p~Ill~d~~------- 47 (334)
++|+.+++++++|+.+ |+.|+ +. |+..++||+|++++++
T Consensus 165 ~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~~~~k~i~n~kI~l~~~~l~~~~~~ 244 (531)
T TIGR02346 165 GNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAEGSVKRVKNAKVAVFSCPLDTATTE 244 (531)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCCCCceeccCCCEEEEecCcCCCccc
Confidence 4589999999999975 44444 33 7889999999999985
Q ss_pred ------CCCh-----------HHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHH
Q 019867 48 ------ISNS-----------NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM 110 (334)
Q Consensus 48 ------i~~~-----------~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~L 110 (334)
++++ +++.++++.+.+.|+||||++++|++.++++|.. .+|++|++|++ .+|
T Consensus 245 ~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~------~~I~av~~~~~-----~~l 313 (531)
T TIGR02346 245 TKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEK------YNIMVLKIPSK-----FEL 313 (531)
T ss_pred CceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHH------CCcEEEecCCH-----HHH
Confidence 3333 2467788999999999999999999999998874 57899999874 478
Q ss_pred HHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHhhhccchhHHHHHh
Q 019867 111 EDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATM---DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLA 187 (334)
Q Consensus 111 edia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~v~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~l~eR~~ 187 (334)
+|||.+|||+++++ ++++++++||+|++|++.+ +++.++.++.
T Consensus 314 ~~Ia~~tGa~ii~~-----l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~----------------------------- 359 (531)
T TIGR02346 314 RRLCKTVGATPLAR-----LGAPQPEEIGYVDSVYVSEIGGQKVTVFKQEN----------------------------- 359 (531)
T ss_pred HHHHHHHCCEEecc-----cccCCHhHccccceEEEEEECCEEEEEEEccC-----------------------------
Confidence 99999999999998 8999999999999998653 4567776542
Q ss_pred hhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhcC-ccccccHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHH
Q 019867 188 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALK 265 (334)
Q Consensus 188 ~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~~~~g~~~~~~AL~ 265 (334)
..++++||+|||+|+.+++|++|+++||||++|+++++| +|||||++|++++..|++++.. ++++++|+++|++||+
T Consensus 360 -~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~ 438 (531)
T TIGR02346 360 -GDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFE 438 (531)
T ss_pred -CCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 136799999999999999999999999999999999887 9999999999999999998665 7899999999999999
Q ss_pred HHHHHHHHhcCCCHHH-HHHHHhc---CCCCeeEecCCCc--eeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 266 MAAYLIASNAGVDGSV-IDKLLEQ---DSSDLGYNPARGN--YVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 266 ~p~~~La~NaG~d~~~-~~kl~~~---~~~~~G~d~~~g~--~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
.||++|++|||+||.+ +.+|+.. ++.++|||+.+|+ ++||++.|||||+.||+++|++|+++|++||||
T Consensus 439 ~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (531)
T TIGR02346 439 IIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRV 513 (531)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999 9999764 5567999999999 599999999999999999999999999999986
No 27
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.2e-51 Score=417.63 Aligned_cols=256 Identities=16% Similarity=0.205 Sum_probs=229.1
Q ss_pred eEEeecCeEEEeeccCCCC-------------hHHHHHHhh-----------HHHHhCCcEEEEeccccccchhhhhhcc
Q 019867 32 TIFVLDGALVLIYDTKISN-------------SNVIRQASL-----------PCMMQGQSLLVVAEDVENEVLGDIATDF 87 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~-------------~~~i~~~le-----------~i~~~~~~llIia~~i~~~aL~~L~~n~ 87 (334)
|+.+++||+|+++|+++.. ++++.++++ ++.+.|..++|+.+.|++.++++|..+
T Consensus 225 m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~- 303 (525)
T TIGR02344 225 MRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKA- 303 (525)
T ss_pred CccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC-
Confidence 7899999999999998754 477777765 677777667777789999999998863
Q ss_pred cCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCcee-eeEEEE---ecceEEEEcCCCChhhH
Q 019867 88 TCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVIA---TMDNVVIIGGSGELVDI 163 (334)
Q Consensus 88 ~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~-a~~v~v---~~~~~~~i~~~~~~~~i 163 (334)
+|++++ +.++++|+|||++|||+++++ ++++++++||+ |+.|++ ++++++++++|+++
T Consensus 304 -----~I~av~-----~v~~~~LerIa~~tGa~ii~~-----l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~--- 365 (525)
T TIGR02344 304 -----NISAIR-----RVRKTDNNRIARACGATIVNR-----PEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP--- 365 (525)
T ss_pred -----CceEEe-----cCCHHHHHHHHHHhCCeEecc-----hhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC---
Confidence 567766 667899999999999999998 89999999999 998887 45778899887542
Q ss_pred HHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhc-CccccccHHHHHHHHH
Q 019867 164 QERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKE 242 (334)
Q Consensus 164 ~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~-gvVpGGGaael~~s~~ 242 (334)
.+|||++||+|+.+++|.||+++||++++++++++ ++|||||++|+++|..
T Consensus 366 ----------------------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~ 417 (525)
T TIGR02344 366 ----------------------------KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVY 417 (525)
T ss_pred ----------------------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHH
Confidence 38999999999999999999999999999999965 8999999999999999
Q ss_pred HHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHhc---C-CCCeeEecCCCceeccccCCccccccc
Q 019867 243 LDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLEQ---D-SSDLGYNPARGNYVDMFKCGDVDPLKH 316 (334)
Q Consensus 243 L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~~---~-~~~~G~d~~~g~~~dm~~~GIiDp~~v 316 (334)
|++++.. ++++|+++++|++||+.||++||+|||+|+.+ +.+|++. + +.++|||+.+|+++||++.|||||+.|
T Consensus 418 l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~v 497 (525)
T TIGR02344 418 LAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAV 497 (525)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHH
Confidence 9998665 88999999999999999999999999999999 9999863 3 567999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 019867 317 VPSEFAKATSMISLKNAI 334 (334)
Q Consensus 317 ~~~al~~A~~~a~~iL~i 334 (334)
|+++|+.|+++|++||||
T Consensus 498 k~~~l~~A~e~a~~iL~i 515 (525)
T TIGR02344 498 KLQTYKTAIESACMLLRI 515 (525)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999986
No 28
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=6.9e-51 Score=414.36 Aligned_cols=256 Identities=18% Similarity=0.262 Sum_probs=231.6
Q ss_pred eEEeecCeEEEeeccCC--------------CChHHHHH-----------HhhHHHHhCCcEEEEeccccccchhhhhhc
Q 019867 32 TIFVLDGALVLIYDTKI--------------SNSNVIRQ-----------ASLPCMMQGQSLLVVAEDVENEVLGDIATD 86 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i--------------~~~~~i~~-----------~le~i~~~~~~llIia~~i~~~aL~~L~~n 86 (334)
|+.+++||+|+++|+++ ++++++.. .++.+.+.|..++++.++|++.++++|..+
T Consensus 230 ~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~ 309 (533)
T PTZ00212 230 QPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEA 309 (533)
T ss_pred CCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC
Confidence 78999999999999986 66666533 355788899999999999999999999875
Q ss_pred ccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEE---EecceEEEEcCCCChhhH
Q 019867 87 FTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDI 163 (334)
Q Consensus 87 ~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---v~~~~~~~i~~~~~~~~i 163 (334)
+|++|+.+ ++++++|||++|||+++++ ++++++++||+|+.|+ +++++++++.+|.
T Consensus 310 ------~I~avr~v-----~~~~l~rIa~~tGa~iis~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~----- 368 (533)
T PTZ00212 310 ------GIMAIEHA-----DFDGMERLAAALGAEIVST-----FDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCA----- 368 (533)
T ss_pred ------CCEEEecC-----CHHHHHHHHHHhCCEEeec-----CCCCCHHHccCCceEEEEEECCeEEEEEEccC-----
Confidence 57888843 3678999999999999998 8999999999999998 6778899998864
Q ss_pred HHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhcC-ccccccHHHHHHHHH
Q 019867 164 QERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKE 242 (334)
Q Consensus 164 ~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g-vVpGGGaael~~s~~ 242 (334)
.+++|||+|||+|+.+++|.||+++||||++|+++++| +|||||++|++++..
T Consensus 369 --------------------------~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~ 422 (533)
T PTZ00212 369 --------------------------KGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANA 422 (533)
T ss_pred --------------------------CCCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHH
Confidence 35689999999999999999999999999999999875 999999999999999
Q ss_pred HHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHh---cCCCCeeEecCCCceeccccCCcccccccH
Q 019867 243 LDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLE---QDSSDLGYNPARGNYVDMFKCGDVDPLKHV 317 (334)
Q Consensus 243 L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~---~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~ 317 (334)
|++++.. ++++++|+++|++||+.||++||+|||+|+.+ +.+|++ +++.++|||+.+|+++||++.|||||+.||
T Consensus 423 L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk 502 (533)
T PTZ00212 423 VEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVK 502 (533)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceecHHHH
Confidence 9998665 88999999999999999999999999999999 999985 356789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 019867 318 PSEFAKATSMISLKNAI 334 (334)
Q Consensus 318 ~~al~~A~~~a~~iL~i 334 (334)
+++|+.|+++|++||||
T Consensus 503 ~~al~~A~e~a~~iL~i 519 (533)
T PTZ00212 503 LSQLCSATEAAEMILRV 519 (533)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999996
No 29
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.2e-51 Score=414.01 Aligned_cols=280 Identities=16% Similarity=0.188 Sum_probs=248.0
Q ss_pred cCCChhHhHHHHHHHhh---------------------------cceee--ee------eEEeecCeEEEeeccC-----
Q 019867 8 ANGDGEIGELIAKVFEK---------------------------GWEND--LI------TIFVLDGALVLIYDTK----- 47 (334)
Q Consensus 8 an~d~~~g~lia~a~~~---------------------------G~~~~--~~------~~~~l~~p~Ill~d~~----- 47 (334)
+++++.+++++++|+.+ |+.|+ |. |+..++||+||++|++
T Consensus 165 ~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~~ 244 (522)
T cd03340 165 ASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELKA 244 (522)
T ss_pred hhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCCc
Confidence 44789999999999977 77776 33 6899999999999997
Q ss_pred --------CCChHH-----------HHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhh
Q 019867 48 --------ISNSNV-----------IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKA 108 (334)
Q Consensus 48 --------i~~~~~-----------i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~ 108 (334)
++++++ +.+.++.+.+.|.++|+++++|++.++++|..++ +.+++ +.+++
T Consensus 245 ~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~------I~~~~-----~v~~~ 313 (522)
T cd03340 245 EKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRD------IFCAG-----RVPEE 313 (522)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCC------cEEEE-----eCCHH
Confidence 455544 5666778889999999999999999999999764 45555 34578
Q ss_pred HHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhccchhHHHH
Q 019867 109 IMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDR 185 (334)
Q Consensus 109 ~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~l~eR 185 (334)
+|+|||++|||+++++ ++++++++||+|++|+ +++++++++.+|..
T Consensus 314 ~l~rIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-------------------------- 362 (522)
T cd03340 314 DLKRVAQATGGSIQTT-----VSNITDDVLGTCGLFEERQVGGERYNIFTGCPK-------------------------- 362 (522)
T ss_pred HHHHHHHHHCCEEeec-----cccCCccccccceEEEEEEECCEEEEEEECCCC--------------------------
Confidence 8999999999999999 8999999999999998 55667888877642
Q ss_pred HhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHH
Q 019867 186 LAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNA 263 (334)
Q Consensus 186 ~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~-gvVpGGGaael~~s~~L~~~~~~-~~~~~~g~~~~~~A 263 (334)
.+.+||++||+|+..++|.+|+++||++++|+++++ ++|||||++|++++..|++++.. ++++++++++|++|
T Consensus 363 -----~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~a 437 (522)
T cd03340 363 -----AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKA 437 (522)
T ss_pred -----CceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 247999999999999999999999999999999977 59999999999999999998665 88999999999999
Q ss_pred HHHHHHHHHHhcCCCHHH-HHHHHhc---CC-CCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 264 LKMAAYLIASNAGVDGSV-IDKLLEQ---DS-SDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 264 L~~p~~~La~NaG~d~~~-~~kl~~~---~~-~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
|+.||++||+|||+|+.+ +.+|++. ++ .++|||+.+|+++||++.|||||+.||+++++.|+++|++||||
T Consensus 438 L~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~i 513 (522)
T cd03340 438 LEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSV 513 (522)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999 9999864 34 57999999999999999999999999999999999999999986
No 30
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.2e-51 Score=414.43 Aligned_cols=286 Identities=15% Similarity=0.168 Sum_probs=244.3
Q ss_pred cEEEeecC------CChhHhHHHHHHHhh----------------------------cceee--ee------eEEeecCe
Q 019867 2 KVGTTAAN------GDGEIGELIAKVFEK----------------------------GWEND--LI------TIFVLDGA 39 (334)
Q Consensus 2 ~va~isan------~d~~~g~lia~a~~~----------------------------G~~~~--~~------~~~~l~~p 39 (334)
+||.+|.+ +|+.+++++++|+.+ |+.|+ |. |+.+++||
T Consensus 153 ~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~ 232 (522)
T TIGR02345 153 KCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANP 232 (522)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccc
Confidence 35555544 789999999999965 77777 32 68999999
Q ss_pred EEEeeccCCC-------------ChHHH-----------HHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEE
Q 019867 40 LVLIYDTKIS-------------NSNVI-----------RQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVC 95 (334)
Q Consensus 40 ~Ill~d~~i~-------------~~~~i-----------~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~ 95 (334)
+|+++|+++. +++++ ...++.+.+.|.+++++.++|++.++++|..+ ++.
T Consensus 233 kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~------~I~ 306 (522)
T TIGR02345 233 KILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADH------NIF 306 (522)
T ss_pred eEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHC------CcE
Confidence 9999999763 33332 33455677789899999999999999999875 456
Q ss_pred EEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHH
Q 019867 96 IIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRS 172 (334)
Q Consensus 96 aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~v~---~~~~~~i~~~~~~~~i~~ri~~l~~ 172 (334)
+++ +..++++++||.+|||+++++ ++++++++||+|+.|+.. +++++++.+|..
T Consensus 307 ~~~-----~v~~~dl~ria~~tga~ii~~-----~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~------------- 363 (522)
T TIGR02345 307 CAG-----RVSDEDLKRVVKACGGSIQST-----TSDLEADVLGTCALFEERQIGSERYNYFTGCPH------------- 363 (522)
T ss_pred EEe-----cCCHHHHHHHHHHhCCeEEcc-----hhhCChhhccCCceEEEEEECCeEEEEEEcCCC-------------
Confidence 665 444788999999999999999 899999999999999843 234444444321
Q ss_pred HhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHHHHcCC-C
Q 019867 173 TIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-N 250 (334)
Q Consensus 173 ~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~-gvVpGGGaael~~s~~L~~~~~~-~ 250 (334)
.++|||+|||+|+.+++|++|+++||+|++|+++++ |+|||||++|++++..|++++.. +
T Consensus 364 ------------------~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~ 425 (522)
T TIGR02345 364 ------------------AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKID 425 (522)
T ss_pred ------------------CceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCC
Confidence 128999999999999999999999999999999975 89999999999999999988655 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHhc---CCCCeeEecCCCceeccccCCcccccccHHHHHHHHHH
Q 019867 251 SDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATS 326 (334)
Q Consensus 251 ~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~~---~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~ 326 (334)
+++++|+++|++||+.||++||+|||+|+.+ +.+|++. ++.++|||+.+|+++||++.|||||+.||+++|++|++
T Consensus 426 ~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e 505 (522)
T TIGR02345 426 GKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFE 505 (522)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999 9999863 55679999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 019867 327 MISLKNAI 334 (334)
Q Consensus 327 ~a~~iL~i 334 (334)
+|++||+|
T Consensus 506 ~a~~iL~i 513 (522)
T TIGR02345 506 AACTILSI 513 (522)
T ss_pred HHHHHHhH
Confidence 99999986
No 31
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.4e-51 Score=412.43 Aligned_cols=256 Identities=20% Similarity=0.254 Sum_probs=226.0
Q ss_pred eEEeecCeEEEeeccCCCC--------------hHHHHH-----------HhhHHHHhCCcEEEEeccccccchhhhhhc
Q 019867 32 TIFVLDGALVLIYDTKISN--------------SNVIRQ-----------ASLPCMMQGQSLLVVAEDVENEVLGDIATD 86 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~--------------~~~i~~-----------~le~i~~~~~~llIia~~i~~~aL~~L~~n 86 (334)
|+.+++||+|+++|+++.. ++++.. +++.+.+.|..++++++.|++.++++|..+
T Consensus 219 ~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~ 298 (519)
T TIGR02341 219 QPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADA 298 (519)
T ss_pred CceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHC
Confidence 6889999999999997753 323322 256788899999999999999999998864
Q ss_pred ccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEEE---ecceEEEEcCCCChhhH
Q 019867 87 FTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TMDNVVIIGGSGELVDI 163 (334)
Q Consensus 87 ~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~v---~~~~~~~i~~~~~~~~i 163 (334)
+|++|+.|+ +.+|+|||++|||+++++ ++++++++||+|+.|+. ++++++++.+|..
T Consensus 299 ------~I~~v~~~~-----~~~l~~ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~---- 358 (519)
T TIGR02341 299 ------GVMAIEHAD-----FEGIERLALVTGGEIVST-----FDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKL---- 358 (519)
T ss_pred ------CcEEEecCC-----HHHHHHHHHHhCCEEecc-----cccCCccccccCceEEEEEECCEEEEEEEcCCC----
Confidence 688999886 568999999999999998 89999999999999973 2344555555431
Q ss_pred HHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhc-CccccccHHHHHHHHH
Q 019867 164 QERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKE 242 (334)
Q Consensus 164 ~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~-gvVpGGGaael~~s~~ 242 (334)
+++|||++||+|+.+++|.+|+++||++++|+++++ |+|||||++|++++..
T Consensus 359 ---------------------------~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~ 411 (519)
T TIGR02341 359 ---------------------------GEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKA 411 (519)
T ss_pred ---------------------------CCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHH
Confidence 468999999999999999999999999999999965 8999999999999999
Q ss_pred HHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHhc---CCCCeeEecCCCceeccccCCcccccccH
Q 019867 243 LDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHV 317 (334)
Q Consensus 243 L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~~---~~~~~G~d~~~g~~~dm~~~GIiDp~~v~ 317 (334)
|+++... ++++++++++|++||+.||++||+|||+|+.+ +.+|++. ++.++|||+.+|+++||++.|||||+.||
T Consensus 412 l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk 491 (519)
T TIGR02341 412 VAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVK 491 (519)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHH
Confidence 9988665 88999999999999999999999999999999 9999863 45679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 019867 318 PSEFAKATSMISLKNAI 334 (334)
Q Consensus 318 ~~al~~A~~~a~~iL~i 334 (334)
+++|+.|+++|++||+|
T Consensus 492 ~~~l~~A~e~a~~iL~i 508 (519)
T TIGR02341 492 RAVVSSAAEAAEVILRV 508 (519)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 99999999999999986
No 32
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.6e-49 Score=398.44 Aligned_cols=269 Identities=31% Similarity=0.441 Sum_probs=238.6
Q ss_pred cEEEeecC------CChhHhHHHHHHHhh------------------------------cceee--ee---eEEeecCeE
Q 019867 2 KVGTTAAN------GDGEIGELIAKVFEK------------------------------GWEND--LI---TIFVLDGAL 40 (334)
Q Consensus 2 ~va~isan------~d~~~g~lia~a~~~------------------------------G~~~~--~~---~~~~l~~p~ 40 (334)
+||.+|.| +|+.+++++++|+.+ |+.|+ |. |+.+++||+
T Consensus 141 ~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~ 220 (464)
T cd00309 141 KVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAK 220 (464)
T ss_pred HHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCce
Confidence 56777777 899999999999977 45555 33 789999999
Q ss_pred EEeeccCCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcE
Q 019867 41 VLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 120 (334)
Q Consensus 41 Ill~d~~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ 120 (334)
|+++|++++. ++|+.++|++.++++|.. .+|++|+. .++++|+|||.+|||+
T Consensus 221 Ili~~~~Le~-----------------lIi~~~~I~~~al~~L~~------~~I~~v~~-----~~~~~L~~Ia~~tGa~ 272 (464)
T cd00309 221 ILLLDCKLEY-----------------VVIAEKGIDDEALHYLAK------LGIMAVRR-----VRKEDLERIAKATGAT 272 (464)
T ss_pred EEEEecCcce-----------------EEecCCCcCHHHHHHHHH------CCeEEEEe-----CCHHHHHHHHHHhCCE
Confidence 9999999987 555555799999999986 57888885 4588999999999999
Q ss_pred EeeCCCCCcccCCCCCCceeeeEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEE
Q 019867 121 VLTGGSGMNSTYFVPLKLGSCKRVIATM---DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLK 197 (334)
Q Consensus 121 ii~~~~~~~l~~~~~~~LG~a~~v~v~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~ 197 (334)
++++ ++++++++||+|+.|++.+ .+++++.++.. ++.|||+
T Consensus 273 ii~~-----~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-------------------------------~~~~TIl 316 (464)
T cd00309 273 IVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG-------------------------------GKVATIL 316 (464)
T ss_pred Eecc-----cccCCcccCccccEEEEEEEcCeeEEEEEecCC-------------------------------CCEEEEE
Confidence 9998 8889999999999998764 34566665431 4589999
Q ss_pred EccCCHhHHHHHHHHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhc
Q 019867 198 VCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNA 275 (334)
Q Consensus 198 vgG~t~~~~~E~~~~i~DAl~~~r~a~~~-gvVpGGGaael~~s~~L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~Na 275 (334)
+||+|+.+++|+||+++||++++++++++ ++|||||++|++++..|.++... ++++++++++|++||+.||++|++||
T Consensus 317 lrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~Na 396 (464)
T cd00309 317 LRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENA 396 (464)
T ss_pred EeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999976 89999999999999999998775 88999999999999999999999999
Q ss_pred CCCHHH-HHHHHhc---CCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 276 GVDGSV-IDKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 276 G~d~~~-~~kl~~~---~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
|+|+.+ +.+|++. +..++|+|..+|++.||++.|||||+.||+++|+.|+++|++||||
T Consensus 397 G~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 459 (464)
T cd00309 397 GLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTI 459 (464)
T ss_pred CCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhH
Confidence 999999 9999864 3457899999999999999999999999999999999999999986
No 33
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4e-50 Score=404.19 Aligned_cols=239 Identities=16% Similarity=0.220 Sum_probs=217.2
Q ss_pred eEEeecCeEEEeeccCCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHH
Q 019867 32 TIFVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 111 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Le 111 (334)
|+.+++||+||++|+++.. |||++++|++.++++|..| +|++|+ +.++++|+
T Consensus 225 m~~~~~n~kIlll~~~Le~-----------------lvi~~k~I~d~al~~L~~~------~I~~v~-----~v~~~~L~ 276 (480)
T cd03337 225 MRRRIENPRIVLLDCPLEY-----------------LVITEKGVSDLAQHYLVKA------GITALR-----RVRKTDNN 276 (480)
T ss_pred CCcEecCCCEEEEecCcce-----------------EEEeCCCccHHHHHHHHHC------CcEEEE-----eCCHHHHH
Confidence 8999999999999998876 9999999999999999986 678888 45688999
Q ss_pred HHHhHcCcEEeeCCCCCcccCCCCCCceee-eEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHhhhccchhHHHHHh
Q 019867 112 DLAILTGGQVLTGGSGMNSTYFVPLKLGSC-KRVIA---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLA 187 (334)
Q Consensus 112 dia~~tG~~ii~~~~~~~l~~~~~~~LG~a-~~v~v---~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~l~eR~~ 187 (334)
|||++|||+++++ ++++++++||+| +.++. +++.++++++|+++
T Consensus 277 rIa~~tGa~ii~~-----~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~--------------------------- 324 (480)
T cd03337 277 RIARACGATIVNR-----PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP--------------------------- 324 (480)
T ss_pred HHHHHHCCEEecc-----hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC---------------------------
Confidence 9999999999999 899999999995 45443 44678888887532
Q ss_pred hhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHH
Q 019867 188 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALK 265 (334)
Q Consensus 188 ~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~-gvVpGGGaael~~s~~L~~~~~~-~~~~~~g~~~~~~AL~ 265 (334)
+.+||++||+|+.+++|.||+++||++++++++++ ++|||||++|+++|..|+++... ++++++++++|++||+
T Consensus 325 ----~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~ 400 (480)
T cd03337 325 ----KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALE 400 (480)
T ss_pred ----CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999976 89999999999999999988665 8899999999999999
Q ss_pred HHHHHHHHhcCCCHHH-HHHHHhc---C-CCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 266 MAAYLIASNAGVDGSV-IDKLLEQ---D-SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 266 ~p~~~La~NaG~d~~~-~~kl~~~---~-~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
.||++||+|||+|+.+ +.+|++. + +.++|+|+.+|+++||++.|||||+.||+++|++|+++|++||||
T Consensus 401 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 474 (480)
T cd03337 401 VIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRI 474 (480)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999 9999863 3 567999999999999999999999999999999999999999996
No 34
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=7e-48 Score=387.12 Aligned_cols=288 Identities=24% Similarity=0.364 Sum_probs=256.9
Q ss_pred cEEEeecCCC------hhHhHHHHHHH------hh---------------------cceee--ee---eEEeecCeEEEe
Q 019867 2 KVGTTAANGD------GEIGELIAKVF------EK---------------------GWEND--LI---TIFVLDGALVLI 43 (334)
Q Consensus 2 ~va~isan~d------~~~g~lia~a~------~~---------------------G~~~~--~~---~~~~l~~p~Ill 43 (334)
+||.++.+++ ..+++++.+|+ .. |+.|+ |. |+..+++|+|++
T Consensus 121 ~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill 200 (485)
T PF00118_consen 121 NIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILL 200 (485)
T ss_dssp HHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEE
T ss_pred hhhcccccccccccchhhhhhhHHHHHHhhcccccccchhhhhhccccccccccccceeeeccccccccccccccceEEe
Confidence 4556677776 78999999999 22 66666 44 788999999999
Q ss_pred eccCCCChHH-----------------------HHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEecc
Q 019867 44 YDTKISNSNV-----------------------IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAA 100 (334)
Q Consensus 44 ~d~~i~~~~~-----------------------i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p 100 (334)
++++++.... +.++++.+.+.|.|+||++++|++.++++|..|++. +++
T Consensus 201 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~------~i~-- 272 (485)
T PF00118_consen 201 LNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGIL------VIR-- 272 (485)
T ss_dssp ESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHE------EES--
T ss_pred eecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhhh------ccc--
Confidence 9999988877 999999999999999999999999999999987643 333
Q ss_pred CcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHhhhc
Q 019867 101 GLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVIIGGSGELVDIQERCEQLRSTIKLS 177 (334)
Q Consensus 101 ~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v---~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~ 177 (334)
+.++++|++|+.+||++++++ +++++++++|+|+.| ++++++++++++.+
T Consensus 273 ---~v~~~~l~~i~~~tg~~ii~~-----~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~------------------- 325 (485)
T PF00118_consen 273 ---RVSKEDLERIARATGASIISS-----LDDLSDEDLGFCKSVEEREIGNKKYIFIEGIG------------------- 325 (485)
T ss_dssp ---SEHHHHHHHHHHHHTSBEBSS-----CGGSTGGGSEEEEEEEEEEETSSEEEEEEEHS-------------------
T ss_pred ---cchHHHHHhhhcccCCcEecc-----cccccchhhhhhhhhhhccccccccccccccc-------------------
Confidence 456889999999999999999 888888889999999 67788888888300
Q ss_pred cchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhh-cCccccccHHHHHHHHHHHHHcCC-ChhHHH
Q 019867 178 TSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE-EGIVPGSGVALLYASKELDKLQTT-NSDQKI 255 (334)
Q Consensus 178 ~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~-~gvVpGGGaael~~s~~L~~~~~~-~~~~~~ 255 (334)
...++.+||+|||+|+.+++|++++++||+++++++++ +++|||||++|++|+..|+++... ++++++
T Consensus 326 ----------~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~ 395 (485)
T PF00118_consen 326 ----------CLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQL 395 (485)
T ss_dssp ----------ESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHH
T ss_pred ----------ccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhh
Confidence 23467999999999999999999999999999999997 689999999999999999887766 889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHh--cCCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHh
Q 019867 256 GVQIVQNALKMAAYLIASNAGVDGSV-IDKLLE--QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKN 332 (334)
Q Consensus 256 g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~--~~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL 332 (334)
++++|++||+.||++|++|||+|+.+ +.+|+. .++.++|||..+|+++||++.|||||+.+|+++++.|+++|+++|
T Consensus 396 ~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL 475 (485)
T PF00118_consen 396 AIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLIL 475 (485)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 999987 355699999999999999999999999999999999999999999
Q ss_pred cC
Q 019867 333 AI 334 (334)
Q Consensus 333 ~i 334 (334)
+|
T Consensus 476 ~i 477 (485)
T PF00118_consen 476 RI 477 (485)
T ss_dssp TE
T ss_pred HH
Confidence 86
No 35
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-44 Score=338.20 Aligned_cols=262 Identities=17% Similarity=0.186 Sum_probs=232.5
Q ss_pred cceee--ee------eEEeecCeEEEeeccC-------------CCChHHHHH-----------HhhHHHHhCCcEEEEe
Q 019867 25 GWEND--LI------TIFVLDGALVLIYDTK-------------ISNSNVIRQ-----------ASLPCMMQGQSLLVVA 72 (334)
Q Consensus 25 G~~~~--~~------~~~~l~~p~Ill~d~~-------------i~~~~~i~~-----------~le~i~~~~~~llIia 72 (334)
|+.|+ |. +|..|.||+||+++-+ ++++++++. .|+++..+|.++|+..
T Consensus 213 GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSk 292 (543)
T KOG0361|consen 213 GVAFKKTFSYAGFEQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSK 292 (543)
T ss_pred ceeeeehccccchhhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEec
Confidence 77787 55 8999999999999973 566666544 4778999999999988
Q ss_pred ccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEEEecceEE
Q 019867 73 EDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVV 152 (334)
Q Consensus 73 ~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~v~~~~~~ 152 (334)
-.|.|.|.+||+.+.+ . +-|+...++|.|...+|||++.++ ..++.++.||.|..++- .
T Consensus 293 LpIGD~ATQyFAdrdi------F-----CAGRV~~eDl~Rv~~acGGsi~tt-----~~~i~~~~LG~C~~FeE-----~ 351 (543)
T KOG0361|consen 293 LPIGDLATQYFADRDI------F-----CAGRVPEEDLNRVMQACGGSIQTT-----VSDIKEEVLGTCALFEE-----R 351 (543)
T ss_pred ccchHHHHHHhhccCc------e-----ecCcCCHHHHHHHHHhcCcchhhh-----hhhcchhhcchhhhHHH-----H
Confidence 8999999999997542 2 245777899999999999999998 88999999999999872 2
Q ss_pred EEcCCCChhhHHHHHHHHHHHhhhccchhHHHHHhhhcC----CeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhh-cC
Q 019867 153 IIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSG----GYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE-EG 227 (334)
Q Consensus 153 ~i~~~~~~~~i~~ri~~l~~~~~~~~~~~l~eR~~~lsg----~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~-~g 227 (334)
.+|+ |||+.|.| ++||+++||+-+..++|.+|++|||++++|.|++ +.
T Consensus 352 QvG~---------------------------eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~ 404 (543)
T KOG0361|consen 352 QVGG---------------------------ERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDS 404 (543)
T ss_pred hhcc---------------------------hhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCc
Confidence 2343 55555554 5899999999999999999999999999999996 47
Q ss_pred ccccccHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHhc---CCCCeeEecCCCce
Q 019867 228 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLEQ---DSSDLGYNPARGNY 302 (334)
Q Consensus 228 vVpGGGaael~~s~~L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~~---~~~~~G~d~~~g~~ 302 (334)
+|+|||+.||.+|+.|++++.. .+++|+-+.+|++|||.+||||++|||+|... +.|||.. +..|+|+|..+..+
T Consensus 405 vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i 484 (543)
T KOG0361|consen 405 VVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGI 484 (543)
T ss_pred EeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccch
Confidence 9999999999999999999988 89999999999999999999999999999999 9999864 78999999999999
Q ss_pred eccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 303 VDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 303 ~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
.|+++.+||+|..||++++..|+|+|++||.|
T Consensus 485 ~dn~~~~VwEP~~VK~Nai~aateAa~lIlsv 516 (543)
T KOG0361|consen 485 ADNFEKFVWEPSIVKINAITAATEAACLILSV 516 (543)
T ss_pred hhHHHhhccChHHHHHHHHHHHHHhhhheEeh
Confidence 99999999999999999999999999999875
No 36
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-42 Score=321.32 Aligned_cols=240 Identities=19% Similarity=0.206 Sum_probs=217.7
Q ss_pred CCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCC
Q 019867 48 ISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSG 127 (334)
Q Consensus 48 i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~ 127 (334)
|.++-++..+++.++++|.+|+||+|+|||+|-|+|..|++. |||+.| -.++|-||++|||+++.+
T Consensus 138 i~~~~ef~emi~~vK~~ga~l~icqwgfddeanhll~~n~lp------avrwVG-----GpEiEliAiaT~grIVpr--- 203 (400)
T KOG0357|consen 138 ISDPFEFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLP------AVRWVG-----GPEIELIAIATGGRIVPR--- 203 (400)
T ss_pred hcccccHHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCC------ceeecC-----CcceEEEEeecCCeeecc---
Confidence 444445788899999999999999999999999999999764 556554 346899999999999999
Q ss_pred CcccCCCCCCceeeeEEE-E----ecceEEEEcCCCChhhHHHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEEEccCC
Q 019867 128 MNSTYFVPLKLGSCKRVI-A----TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHG 202 (334)
Q Consensus 128 ~~l~~~~~~~LG~a~~v~-v----~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t 202 (334)
|++++++.||+|+.|. + ++|++.+++.|++. +++||.|||++
T Consensus 204 --F~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~ns-------------------------------kaVTifvRg~N 250 (400)
T KOG0357|consen 204 --FSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNS-------------------------------KAVTIFVRGGN 250 (400)
T ss_pred --HhhhCHhhccccceEEEEecccccceEEEEEecCCC-------------------------------ceEEEEEecCc
Confidence 9999999999999996 2 58899999999753 48999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhh-cCccccccHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 019867 203 KAEVREKKLKITNALHAVQAAKE-EGIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGS 280 (334)
Q Consensus 203 ~~~~~E~~~~i~DAl~~~r~a~~-~gvVpGGGaael~~s~~L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~ 280 (334)
+.+++|.||++|||||++||.++ +.+|.|||++|+.||-.+.+-+.. ++.+||++++|++||+.+|..||+|+|++|+
T Consensus 251 kmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi 330 (400)
T KOG0357|consen 251 KMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPI 330 (400)
T ss_pred ceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCch
Confidence 99999999999999999999995 689999999999999999887766 8999999999999999999999999999999
Q ss_pred H-HHHHHhc----CCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 281 V-IDKLLEQ----DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 281 ~-~~kl~~~----~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
+ ++++++. .++++|+|+....-.||.+.+++||+.-|++.+..||.++.|+|+|
T Consensus 331 ~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKi 389 (400)
T KOG0357|consen 331 ETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKI 389 (400)
T ss_pred hhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhc
Confidence 9 9999764 6789999998888899999999999999999999999999999986
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-40 Score=308.04 Aligned_cols=262 Identities=20% Similarity=0.266 Sum_probs=231.1
Q ss_pred eEEeecCeEEEeeccCC-------------CChHH-----------HHHHhhHHHHhCCcEEEEeccccccchhhhhhcc
Q 019867 32 TIFVLDGALVLIYDTKI-------------SNSNV-----------IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDF 87 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i-------------~~~~~-----------i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~ 87 (334)
.|.++++++|-+..+.| ++..+ ++.++++++++|+++++|+++|-.++++-|+.|.
T Consensus 232 gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHf 311 (534)
T KOG0358|consen 232 GPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHF 311 (534)
T ss_pred CcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHH
Confidence 67888999999988854 33333 5667789999999999999999888888887776
Q ss_pred cCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEEEe----cceEEEEcCCCChhhH
Q 019867 88 TCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT----MDNVVIIGGSGELVDI 163 (334)
Q Consensus 88 ~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~v~----~~~~~~i~~~~~~~~i 163 (334)
+. .+++.+|| +..++++|.++..+|++++++ ++.++++.||+++.++-. +++.+-+.|..
T Consensus 312 L~-klkimvik-----dieRediefick~l~c~Pia~-----id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~----- 375 (534)
T KOG0358|consen 312 LA-KLKIMVIK-----DIEREDIEFICKTLGCKPIAD-----IDHFTADKLGSADLVEETDSSGEGKIVKITGIQ----- 375 (534)
T ss_pred HH-hCcEEEEc-----cccHhhHHHHHhhcCCeecch-----hhhcChhhcCcchhhhhcccCCCccEEEEEEee-----
Confidence 55 58999999 455789999999999999999 999999999999998743 33455555531
Q ss_pred HHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhh-cCccccccHHHHHHHHH
Q 019867 164 QERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE-EGIVPGSGVALLYASKE 242 (334)
Q Consensus 164 ~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~-~gvVpGGGaael~~s~~ 242 (334)
--|..++|++||+++..++|.+|++|||||++|+.++ .+.+||||+.|+.++..
T Consensus 376 -------------------------n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~ 430 (534)
T KOG0358|consen 376 -------------------------NAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALR 430 (534)
T ss_pred -------------------------cCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHH
Confidence 1367899999999999999999999999999999996 57999999999999999
Q ss_pred HHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHhc---CCCCeeEecCCCceeccccCCcccccccH
Q 019867 243 LDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHV 317 (334)
Q Consensus 243 L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~~---~~~~~G~d~~~g~~~dm~~~GIiDp~~v~ 317 (334)
|..++.. .|.+.|++++|++|||.+|.+||+|||++|.. +++||+. +..+.|+|+++|.+.||++..|+.|+.|.
T Consensus 431 L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs 510 (534)
T KOG0358|consen 431 LSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVS 510 (534)
T ss_pred HHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeee
Confidence 9999877 88899999999999999999999999999999 9999975 67899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 019867 318 PSEFAKATSMISLKNAI 334 (334)
Q Consensus 318 ~~al~~A~~~a~~iL~i 334 (334)
.++++.|+|.+.+||+|
T Consensus 511 ~SaitlA~Etvr~ILKI 527 (534)
T KOG0358|consen 511 ISAITLATETVRSILKI 527 (534)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999999987
No 38
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-38 Score=298.94 Aligned_cols=256 Identities=20% Similarity=0.286 Sum_probs=224.6
Q ss_pred eEEeecCeEEEeeccCC--------------CCh-----------HHHHHHhhHHHHhCCcEEEEeccccccchhhhhhc
Q 019867 32 TIFVLDGALVLIYDTKI--------------SNS-----------NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATD 86 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i--------------~~~-----------~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n 86 (334)
+|.+++||+||+.+.++ ++. +.|...+++|.++|.+++|-.+-|.+...+.|..-
T Consensus 223 qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~da 302 (527)
T KOG0363|consen 223 QPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADA 302 (527)
T ss_pred CcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhc
Confidence 89999999999998843 222 13556688999999999999999999999988753
Q ss_pred ccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEE---EecceEEEEcCCCChhhH
Q 019867 87 FTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDI 163 (334)
Q Consensus 87 ~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---v~~~~~~~i~~~~~~~~i 163 (334)
.|.++- +...+-+|||+..|||.++|. |++++...||+|+.++ +++|++.-|.|+.
T Consensus 303 ------gi~aIE-----HADFdGiERLalvtGGeI~ST-----Fd~p~~~klG~C~~IeeimiGed~li~FSGv~----- 361 (527)
T KOG0363|consen 303 ------GIMAIE-----HADFDGIERLALVTGGEIVST-----FDNPELVKLGECDLIEEIMIGEDKLIKFSGVK----- 361 (527)
T ss_pred ------Ccceee-----cccchhHHHHhhcccceeeec-----cCCcchhccccchhhHHHhcCccceeeecccc-----
Confidence 344444 334577999999999999999 9999999999999886 5565555555542
Q ss_pred HHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHh-hcCccccccHHHHHHHHH
Q 019867 164 QERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAK-EEGIVPGSGVALLYASKE 242 (334)
Q Consensus 164 ~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~-~~gvVpGGGaael~~s~~ 242 (334)
.|..|||++||+|++.++|.+|++|||||+..... ++.+|.|||++||.++..
T Consensus 362 --------------------------~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~a 415 (527)
T KOG0363|consen 362 --------------------------LGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKA 415 (527)
T ss_pred --------------------------cccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHH
Confidence 24699999999999999999999999999998887 568999999999999999
Q ss_pred HHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHhc---CCCCeeEecCCCceeccccCCcccccccH
Q 019867 243 LDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHV 317 (334)
Q Consensus 243 L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~~---~~~~~G~d~~~g~~~dm~~~GIiDp~~v~ 317 (334)
+.+++.. ++++..++++|++||..+|.+||.|||+|+.+ +++|+.. +..++|+|+++|++.||.+.||+|+++||
T Consensus 416 v~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK 495 (527)
T KOG0363|consen 416 VDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLKVK 495 (527)
T ss_pred HHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHHHH
Confidence 9999887 89999999999999999999999999999999 9999975 77899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 019867 318 PSEFAKATSMISLKNAI 334 (334)
Q Consensus 318 ~~al~~A~~~a~~iL~i 334 (334)
+..+.+|.|+|.+|||+
T Consensus 496 ~~vv~sasEaae~ilrv 512 (527)
T KOG0363|consen 496 QAVVSSASEAAEMILRV 512 (527)
T ss_pred HHHHhhhHHHHHHHHhh
Confidence 99999999999999985
No 39
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-38 Score=302.42 Aligned_cols=256 Identities=14% Similarity=0.154 Sum_probs=224.9
Q ss_pred eEEeecCeEEEeeccCC-------------CCh-----------HHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcc
Q 019867 32 TIFVLDGALVLIYDTKI-------------SNS-----------NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDF 87 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i-------------~~~-----------~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~ 87 (334)
|+..++||+|+++|+++ ... +++..+++.+....-.+||+.+++++.|.|||.+++
T Consensus 225 mrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~ 304 (527)
T KOG0364|consen 225 MRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKAN 304 (527)
T ss_pred HHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcC
Confidence 78899999999999953 112 234556667776664466666799999999999876
Q ss_pred cCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCce-eeeEEEEe---cceEEEEcCCCChhhH
Q 019867 88 TCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLG-SCKRVIAT---MDNVVIIGGSGELVDI 163 (334)
Q Consensus 88 ~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG-~a~~v~v~---~~~~~~i~~~~~~~~i 163 (334)
+. +.++.||++..+||.+||++++++ ++|+...+.| .|+.+++. ++.|+|++.|.+|+
T Consensus 305 iT-----------~~rr~rKtDn~ria~acga~iv~r-----pedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pk-- 366 (527)
T KOG0364|consen 305 IT-----------AIRRLRKTDNNRIARACGARIVNR-----PEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPK-- 366 (527)
T ss_pred ch-----------hhhhhhccccchhhhhcCceeccC-----hhhCchhccCcccceeeeeccCchhhhhhhhcCCCc--
Confidence 54 456889999999999999999999 9999999999 57788754 45678888887665
Q ss_pred HHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHh-hcCccccccHHHHHHHHH
Q 019867 164 QERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAK-EEGIVPGSGVALLYASKE 242 (334)
Q Consensus 164 ~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~-~~gvVpGGGaael~~s~~ 242 (334)
+|||++||+|...++|.+|.+.||+.+.|+.+ ++.+|||||++||..|..
T Consensus 367 -----------------------------aCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~ 417 (527)
T KOG0364|consen 367 -----------------------------ACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHE 417 (527)
T ss_pred -----------------------------ceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHH
Confidence 79999999999999999999999999999999 689999999999999999
Q ss_pred HHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHhc---CCCCeeEecCCCceeccccCCcccccccH
Q 019867 243 LDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHV 317 (334)
Q Consensus 243 L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~~---~~~~~G~d~~~g~~~dm~~~GIiDp~~v~ 317 (334)
|.+.+.. ++-+++.|.+++.||+.+||+|++|+|.++.. ++.++.. +...+|+|..+|.++||.+.|+|+|..||
T Consensus 418 L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~vK 497 (527)
T KOG0364|consen 418 LRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAVK 497 (527)
T ss_pred HHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhhh
Confidence 9987666 88999999999999999999999999999999 8888764 55678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 019867 318 PSEFAKATSMISLKNAI 334 (334)
Q Consensus 318 ~~al~~A~~~a~~iL~i 334 (334)
.+..++|.+.++++|||
T Consensus 498 ~Q~~ktavesa~~LLRI 514 (527)
T KOG0364|consen 498 LQTGKTAVESACLLLRI 514 (527)
T ss_pred hhhhhHHHHHHHHHHhh
Confidence 99999999999999997
No 40
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-36 Score=290.10 Aligned_cols=283 Identities=18% Similarity=0.241 Sum_probs=242.9
Q ss_pred CCChhHhHHHHHHHhh----------------------------------cceeeee-----eEEeecCeEEEeeccC--
Q 019867 9 NGDGEIGELIAKVFEK----------------------------------GWENDLI-----TIFVLDGALVLIYDTK-- 47 (334)
Q Consensus 9 n~d~~~g~lia~a~~~----------------------------------G~~~~~~-----~~~~l~~p~Ill~d~~-- 47 (334)
+.-+.-++++++|+.. |+.++.. |+.++.+|+|++.|+.
T Consensus 166 ~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lq 245 (545)
T KOG0360|consen 166 MDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQ 245 (545)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEecccc
Confidence 3345678889988877 5566621 8999999999999994
Q ss_pred -----------CCChHHHHHH-----------hhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccc
Q 019867 48 -----------ISNSNVIRQA-----------SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAED 105 (334)
Q Consensus 48 -----------i~~~~~i~~~-----------le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~ 105 (334)
|++++++..+ ++++...|.++++++++|||.++++|+.. .++||+ +.
T Consensus 246 k~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~vea------gamAVr-----R~ 314 (545)
T KOG0360|consen 246 KTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEA------GAMAVR-----RC 314 (545)
T ss_pred cccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHc------chhhhH-----HH
Confidence 5566554433 45788899999999999999999999974 344444 77
Q ss_pred hhhHHHHHHhHcCcEEeeCCCCCc-ccCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhccchh
Q 019867 106 RKAIMEDLAILTGGQVLTGGSGMN-STYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDK 181 (334)
Q Consensus 106 r~~~Ledia~~tG~~ii~~~~~~~-l~~~~~~~LG~a~~v~---v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~ 181 (334)
+|++|++||++||++++++-.++. -+.+++..+|+|+.|. +.+|+.+++.+..
T Consensus 315 ~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~k----------------------- 371 (545)
T KOG0360|consen 315 KKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTK----------------------- 371 (545)
T ss_pred HHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCc-----------------------
Confidence 799999999999999999944332 2456788999999985 6788888888742
Q ss_pred HHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhcC-ccccccHHHHHHHHHHHHHcCC-ChhHHHHHHH
Q 019867 182 LKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQI 259 (334)
Q Consensus 182 l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~~~~g~~~ 259 (334)
...|.|++||+++..++|.+|+++||||++|..++++ +|||||++|.+++-.|+.+... .++|+..+.-
T Consensus 372 ---------a~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiae 442 (545)
T KOG0360|consen 372 ---------ATSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAE 442 (545)
T ss_pred ---------cceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHH
Confidence 1268999999999999999999999999999999875 9999999999999999999888 6899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHH-HHHHHhc-----------CCCCeeEecCCCceeccccCCcccccccHHHHHHHHHHH
Q 019867 260 VQNALKMAAYLIASNAGVDGSV-IDKLLEQ-----------DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSM 327 (334)
Q Consensus 260 ~~~AL~~p~~~La~NaG~d~~~-~~kl~~~-----------~~~~~G~d~~~g~~~dm~~~GIiDp~~v~~~al~~A~~~ 327 (334)
|++||..+|++|+-|++.|+.+ +++++.. ...++|.|..+|++.|.++.|+++|.-+|...|+.|++.
T Consensus 443 fa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~atea 522 (545)
T KOG0360|consen 443 FAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEA 522 (545)
T ss_pred HHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhhhHHHHHh
Confidence 9999999999999999999999 9999852 235789999999999999999999999999999999999
Q ss_pred HHHHhcC
Q 019867 328 ISLKNAI 334 (334)
Q Consensus 328 a~~iL~i 334 (334)
+..+|||
T Consensus 523 aitiLri 529 (545)
T KOG0360|consen 523 AITILRI 529 (545)
T ss_pred hhhhcch
Confidence 9999997
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-33 Score=263.53 Aligned_cols=255 Identities=18% Similarity=0.244 Sum_probs=218.2
Q ss_pred eEEeecCeEEEeeccCC-------CC------hHH-----------HHHHhhHHHHhCC---cEEEE-eccccccchhhh
Q 019867 32 TIFVLDGALVLIYDTKI-------SN------SNV-----------IRQASLPCMMQGQ---SLLVV-AEDVENEVLGDI 83 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i-------~~------~~~-----------i~~~le~i~~~~~---~llIi-a~~i~~~aL~~L 83 (334)
||.+++|+|||+++-.+ ++ ..| +..-+.+|.+.++ .+|+| +++||+..|..|
T Consensus 218 mp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~ 297 (520)
T KOG0359|consen 218 MPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSL 297 (520)
T ss_pred cccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhh
Confidence 99999999999999743 22 111 1122344554442 35666 679999999999
Q ss_pred hhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEE---EecceEEEEcCCCCh
Q 019867 84 ATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGEL 160 (334)
Q Consensus 84 ~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---v~~~~~~~i~~~~~~ 160 (334)
+.++ |.|.+ +.++..+|||..+|||..+++ ++|++++.||+|+.|. +++++++|+++|.+|
T Consensus 298 a~~g------IlaLR-----RAKRRNmERL~lacGG~a~ns-----vddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p 361 (520)
T KOG0359|consen 298 AKSG------ILALR-----RAKRRNMERLVLACGGEAVNS-----VDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP 361 (520)
T ss_pred hhcc------hHHHH-----HHhhhhHHHHHHhhccceecc-----cccCChhhccccceeEEeeccceeeEeeecCCCC
Confidence 8764 34433 556678999999999999999 9999999999999996 578899999999876
Q ss_pred hhHHHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhcC-ccccccHHHHHH
Q 019867 161 VDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYA 239 (334)
Q Consensus 161 ~~i~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g-vVpGGGaael~~ 239 (334)
. +|||+++||+++.+-+.|+.++|+|++++++++++ ++||+|+.+.++
T Consensus 362 ~-------------------------------S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~ 410 (520)
T KOG0359|consen 362 S-------------------------------SVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVAL 410 (520)
T ss_pred c-------------------------------ceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHH
Confidence 5 79999999999999999999999999999999875 999999999999
Q ss_pred HHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHhc-CCCCeeEecCCCceeccccCCccccccc
Q 019867 240 SKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLEQ-DSSDLGYNPARGNYVDMFKCGDVDPLKH 316 (334)
Q Consensus 240 s~~L~~~~~~-~~~~~~g~~~~~~AL~~p~~~La~NaG~d~~~-~~kl~~~-~~~~~G~d~~~g~~~dm~~~GIiDp~~v 316 (334)
+..|+..... .++.++|+++|++||..+|++|++|+|+|+.+ +.+|..+ .....|+|..+|+..|....||||.+.|
T Consensus 411 ~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~~~~~~gi~Dny~v 490 (520)
T KOG0359|consen 411 GRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEECDPSRKGIYDNYSV 490 (520)
T ss_pred HHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCccchhhccccchHHH
Confidence 9999987776 88999999999999999999999999999999 8888765 2235699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 019867 317 VPSEFAKATSMISLKNA 333 (334)
Q Consensus 317 ~~~al~~A~~~a~~iL~ 333 (334)
+++.|.+++-+|+.+|-
T Consensus 491 ~~~~l~s~~via~nlLl 507 (520)
T KOG0359|consen 491 KKQLLRSEAVIATNLLL 507 (520)
T ss_pred HHHHhhhhHHHHHHHHH
Confidence 99999999999998874
No 42
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-32 Score=260.31 Aligned_cols=278 Identities=18% Similarity=0.199 Sum_probs=234.3
Q ss_pred CChhHhHHHHHHHhh-----------------------------cceee-ee--eEEeecCeEEEeeccC----------
Q 019867 10 GDGEIGELIAKVFEK-----------------------------GWEND-LI--TIFVLDGALVLIYDTK---------- 47 (334)
Q Consensus 10 ~d~~~g~lia~a~~~-----------------------------G~~~~-~~--~~~~l~~p~Ill~d~~---------- 47 (334)
++..+-++|++|-.. ||.|+ .. ....-++.+|.++.|+
T Consensus 171 ~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG~v~~ak~arvAvf~cP~d~~~TEtkg 250 (537)
T KOG0362|consen 171 NEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEGEVKSAKDARVAVFACPFDIAQTETKG 250 (537)
T ss_pred hHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcccceeeEEEEeccccCCcccccccceeEEEecCCCcccccCcc
Confidence 356677788887665 55555 22 2356667889999887
Q ss_pred ---CCChHHHHH-----------HhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHH
Q 019867 48 ---ISNSNVIRQ-----------ASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDL 113 (334)
Q Consensus 48 ---i~~~~~i~~-----------~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledi 113 (334)
|++++++.. .++.+..+|..+++....+++.+|+++- + +++++++.++ |.+|.+|
T Consensus 251 TvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhfln--k----y~ImVlqi~S-----k~eLrrl 319 (537)
T KOG0362|consen 251 TVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLN--K----YKIMVLQINS-----KFDLRRL 319 (537)
T ss_pred eeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhc--c----ccEEEEEecc-----HhhHHHH
Confidence 777776544 3556778899999999999999999854 2 7899999886 8899999
Q ss_pred HhHcCcEEeeCCCCCcccCCCCCCceeeeEEE---EecceEEEEcC-CCChhhHHHHHHHHHHHhhhccchhHHHHHhhh
Q 019867 114 AILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGG-SGELVDIQERCEQLRSTIKLSTSDKLKDRLAKL 189 (334)
Q Consensus 114 a~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---v~~~~~~~i~~-~~~~~~i~~ri~~l~~~~~~~~~~~l~eR~~~l 189 (334)
+...||++.++ +..+.++.+|+|++|. ++.+..+++.. ++
T Consensus 320 crtvGA~~l~r-----l~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~------------------------------- 363 (537)
T KOG0362|consen 320 CRTVGATALPR-----LFPPAPEELGYCDSVSTQEIGDTLVVVFRWEST------------------------------- 363 (537)
T ss_pred HHHcCCccchh-----ccCCCCccccccceeeeeecCCceEEEEeeccC-------------------------------
Confidence 99999999999 8888889999999986 44555554443 32
Q ss_pred cCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhh-cCccccccHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHH
Q 019867 190 SGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE-EGIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMA 267 (334)
Q Consensus 190 sg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~-~gvVpGGGaael~~s~~L~~~~~~-~~~~~~g~~~~~~AL~~p 267 (334)
.++++||++||+|+..+|+.||.++|++++.+..++ ++++||+|++|+++++.|.++... +|..|+++..|++||+..
T Consensus 364 ~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~ 443 (537)
T KOG0362|consen 364 GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVL 443 (537)
T ss_pred CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccc
Confidence 235899999999999999999999999999999996 479999999999999999999887 899999999999999999
Q ss_pred HHHHHHhcCCCHHH-HHHHHhc--CCCCeeEecCCC-ceeccccCCcccccccHHHHHHHHHHHHHHHhcC
Q 019867 268 AYLIASNAGVDGSV-IDKLLEQ--DSSDLGYNPARG-NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 334 (334)
Q Consensus 268 ~~~La~NaG~d~~~-~~kl~~~--~~~~~G~d~~~g-~~~dm~~~GIiDp~~v~~~al~~A~~~a~~iL~i 334 (334)
|++||+|||+++.+ ++++... +..+.|+|..-. ...|+.++||||-+.+|.++++.|+++|.++|++
T Consensus 444 PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~v 514 (537)
T KOG0362|consen 444 PKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTV 514 (537)
T ss_pred cHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeeh
Confidence 99999999999999 9998754 345678887655 4889999999999999999999999999999985
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.90 E-value=3.5e-23 Score=186.92 Aligned_cols=161 Identities=26% Similarity=0.343 Sum_probs=135.7
Q ss_pred cEEEeecC-----CChhHhHHHHHHHhh------------------------------cceee--ee---eEEeecCeEE
Q 019867 2 KVGTTAAN-----GDGEIGELIAKVFEK------------------------------GWEND--LI---TIFVLDGALV 41 (334)
Q Consensus 2 ~va~isan-----~d~~~g~lia~a~~~------------------------------G~~~~--~~---~~~~l~~p~I 41 (334)
+||.+|.+ +++.+++++++|+.. |+.|+ |. |+..++||+|
T Consensus 6 ~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~~n~~I 85 (209)
T cd03333 6 QVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRLENAKI 85 (209)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeEcCCCcE
Confidence 45556666 788999999999966 56665 44 8899999999
Q ss_pred EeeccCCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEE
Q 019867 42 LIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQV 121 (334)
Q Consensus 42 ll~d~~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~i 121 (334)
+++++++.. ++++.++|++.|+++|.. .+|++|+. .++.+|+|||.+|||++
T Consensus 86 ll~~~~le~-----------------vii~~~~I~~~al~~l~~------~~I~~v~~-----~~~~~l~~ia~~tga~i 137 (209)
T cd03333 86 LLLDCPLEY-----------------VVIAEKGIDDLALHYLAK------AGIMAVRR-----VKKEDLERIARATGATI 137 (209)
T ss_pred EEEeCCeeE-----------------EEEecCcccHHHHHHHHH------CCCEEEEe-----CCHHHHHHHHHHHCCEE
Confidence 999999887 666667799999999987 46788885 45789999999999999
Q ss_pred eeCCCCCcccCCCCCCceeeeEEEEecc---eEEEEcCCCChhhHHHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEEE
Q 019867 122 LTGGSGMNSTYFVPLKLGSCKRVIATMD---NVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKV 198 (334)
Q Consensus 122 i~~~~~~~l~~~~~~~LG~a~~v~v~~~---~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~v 198 (334)
+++ ++++++++||+|++|++.+. .++++.++.. ++.|||++
T Consensus 138 i~~-----~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~-------------------------------~~~~tIll 181 (209)
T cd03333 138 VSS-----LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKG-------------------------------GKAATILL 181 (209)
T ss_pred ecc-----cccCChhhceeeeEEEEEEECCeEEEEEEcCCC-------------------------------CCEEEEEE
Confidence 999 88899999999999997653 3667766532 35899999
Q ss_pred ccCCHhHHHHHHHHHHHHHHHHHHHhhc
Q 019867 199 CGHGKAEVREKKLKITNALHAVQAAKEE 226 (334)
Q Consensus 199 gG~t~~~~~E~~~~i~DAl~~~r~a~~~ 226 (334)
||+|+.+++|.||+++||++++++++++
T Consensus 182 rG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 182 RGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred ECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999753
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.86 E-value=4.4e-21 Score=179.22 Aligned_cols=155 Identities=12% Similarity=0.173 Sum_probs=128.3
Q ss_pred cceee--ee---eEEeecCeEEEeeccCCCC------hHH-----------HHHHhhHHHHhCCcEEEEeccccccchhh
Q 019867 25 GWEND--LI---TIFVLDGALVLIYDTKISN------SNV-----------IRQASLPCMMQGQSLLVVAEDVENEVLGD 82 (334)
Q Consensus 25 G~~~~--~~---~~~~l~~p~Ill~d~~i~~------~~~-----------i~~~le~i~~~~~~llIia~~i~~~aL~~ 82 (334)
|+.|+ +. ||..++||+|+++++++.. +++ +..++++++..|.++||+.++|++.|+++
T Consensus 68 Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~ 147 (261)
T cd03334 68 GVVFTKNVAHKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDL 147 (261)
T ss_pred eEEEeCCCCCccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHH
Confidence 56665 33 8999999999999997633 222 44567789999999999999999999999
Q ss_pred hhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCccc-CCCCCCceeeeEEEEec--------ceEEE
Q 019867 83 IATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNST-YFVPLKLGSCKRVIATM--------DNVVI 153 (334)
Q Consensus 83 L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~-~~~~~~LG~a~~v~v~~--------~~~~~ 153 (334)
|..+ +|.+|+. .++.+|++||.+|||+++++ +. ++++++||+|+.|++.+ +++++
T Consensus 148 l~k~------gI~~v~~-----v~~~dl~rIa~~tGa~ii~~-----i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~ 211 (261)
T cd03334 148 LLEA------GITLVLN-----VKPSVLERISRCTGADIISS-----MDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMF 211 (261)
T ss_pred HHHC------CCEEEEe-----cCHHHHHHHHHHhCCEEecC-----hhhhcCcccCcCcceEEEEEecCcCCCceeEEE
Confidence 9975 4667774 45789999999999999998 43 67888999999998643 46888
Q ss_pred EcCCCChhhHHHHHHHHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhc
Q 019867 154 IGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 226 (334)
Q Consensus 154 i~~~~~~~~i~~ri~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~ 226 (334)
+.+|.. .+++||++||+|+..++|.||.++||+++++++..+
T Consensus 212 ~~~~~~-------------------------------~~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le 253 (261)
T cd03334 212 FEGCPK-------------------------------ELGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLE 253 (261)
T ss_pred EecCCC-------------------------------CceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888753 247999999999999999999999999999999854
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.10 E-value=7.4e-06 Score=89.77 Aligned_cols=159 Identities=14% Similarity=0.187 Sum_probs=115.5
Q ss_pred eEEeecCeEEEeeccC---------CCChHHH--------HHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceE
Q 019867 32 TIFVLDGALVLIYDTK---------ISNSNVI--------RQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKV 94 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~---------i~~~~~i--------~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v 94 (334)
|...+++|+|+++-+. +.+++.+ ...+..+....-+++.+.++|++.|+.+|.. +++.-+
T Consensus 394 M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~---k~I~lv 470 (1598)
T KOG0230|consen 394 MATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLD---KGISLV 470 (1598)
T ss_pred hhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhc---cCeEEE
Confidence 8999999999999883 3444332 2234444444445888899999999999875 344444
Q ss_pred EEEeccCcccchhhHHHHHHhHcCcEEeeCCCCCcccCCCCCCceeeeEEEEecc--------eEEEEcCCCChhhHHHH
Q 019867 95 CIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMD--------NVVIIGGSGELVDIQER 166 (334)
Q Consensus 95 ~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~v~~~--------~~~~i~~~~~~~~i~~r 166 (334)
+-|| ...|+||++.||+.|+.+ ++.++...||+|..+++.+- ...|+.+|..+
T Consensus 471 lnvK--------~s~leRIsR~tga~I~~s-----iDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~------ 531 (1598)
T KOG0230|consen 471 LNVK--------RSLLERISRCTGADIVPS-----VDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKP------ 531 (1598)
T ss_pred Eecc--------HHHHHHHHHHhcCceecc-----hhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCC------
Confidence 4344 678999999999999988 88888899999999986431 12344554321
Q ss_pred HHHHHHHhhhccchhHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHH-HHhhcCccccccHHHH
Q 019867 167 CEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQ-AAKEEGIVPGSGVALL 237 (334)
Q Consensus 167 i~~l~~~~~~~~~~~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r-~a~~~gvVpGGGaael 237 (334)
..|||+++|.+..++++.|+-+.=.+-++- .+++.-|+.--|+...
T Consensus 532 -------------------------lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 532 -------------------------LGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred -------------------------CCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 258999999999999999999988887774 3446666666665443
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00022 Score=73.13 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=78.1
Q ss_pred eEEeecCeEEEeeccCCCChHHHHHH------------hhHHHHhCCc-EEEEeccccccchhhhhhcccCCcceEEEEe
Q 019867 32 TIFVLDGALVLIYDTKISNSNVIRQA------------SLPCMMQGQS-LLVVAEDVENEVLGDIATDFTCTTEKVCIIK 98 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~~i~~~------------le~i~~~~~~-llIia~~i~~~aL~~L~~n~~~g~~~v~aVk 98 (334)
.+.++.+|.+- +...+++.++++.+ ++.+.+.|.+ ++|++++|+|.++++|..+ .|.+++
T Consensus 226 ~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~ 298 (524)
T COG0459 226 KKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGR 298 (524)
T ss_pred cccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceecc
Confidence 34444445444 55556666555444 4467788899 7888899999999999975 345555
Q ss_pred ccCcccchhhHH-HHHHhHcCcEEeeCCCCCcccCCCCCCcee--eeEEEEe---cceEEEEcCC
Q 019867 99 AAGLAEDRKAIM-EDLAILTGGQVLTGGSGMNSTYFVPLKLGS--CKRVIAT---MDNVVIIGGS 157 (334)
Q Consensus 99 ~p~~g~~r~~~L-edia~~tG~~ii~~~~~~~l~~~~~~~LG~--a~~v~v~---~~~~~~i~~~ 157 (334)
+..++++ ++|+.+|||++++. +++.++..+|. |+.|+.+ +++++++.++
T Consensus 299 -----~v~~~dl~~~l~~~~ga~~v~~-----~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~ 353 (524)
T COG0459 299 -----RVKKEDLGERLAKLGGAKIVSV-----LKDLTTIVLGEGAAGLVEETKTGDYDMEKLQER 353 (524)
T ss_pred -----eecchhhHHHHHHccCceEEee-----cccCceeecCccccceEEEeeccchhhhhhhhh
Confidence 3346778 79999999999999 99999999999 9999753 3334444443
No 47
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=74.00 E-value=0.97 Score=46.52 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=51.9
Q ss_pred hCCcEEEEeccccc-----cchhhhhhcccCCcc----eEEEEeccCcccchhhHHHHHHhHcCcEEeeCC
Q 019867 64 QGQSLLVVAEDVEN-----EVLGDIATDFTCTTE----KVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGG 125 (334)
Q Consensus 64 ~~~~llIia~~i~~-----~aL~~L~~n~~~g~~----~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~ 125 (334)
...|+.|+.+++++ +++..++.|++++.. ++++++.| +++.+.+.|+|..++++.++...+
T Consensus 246 ~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~d 315 (522)
T TIGR02345 246 EKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDED 315 (522)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHHH
Confidence 34578888999998 888888888888744 89999999 999999999999999999876653
No 48
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=62.81 E-value=1.8e+02 Score=29.61 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=44.7
Q ss_pred hHHHHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhcC--ccccccHHHHHHHHHHHHHcC
Q 019867 181 KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG--IVPGSGVALLYASKELDKLQT 248 (334)
Q Consensus 181 ~l~eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g--vVpGGGaael~~s~~L~~~~~ 248 (334)
+.-+.++++.|.. ..++.+.+.++.|++.-.+.-+..+ ++.|+..-++.+++.|.+...
T Consensus 278 ~fLr~Ia~~~G~~---------pe~l~~Er~rl~dal~d~~~~L~GKrvai~Gdp~~~i~LarfL~elGm 338 (457)
T CHL00073 278 AWIEKICSVFGIE---------PQGLEEREEQIWESLKDYLDLVRGKSVFFMGDNLLEISLARFLIRCGM 338 (457)
T ss_pred HHHHHHHHHhCcC---------HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHHCCC
Confidence 4556678887721 3456888888889999999988653 677887899999999998643
No 49
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=53.43 E-value=42 Score=28.03 Aligned_cols=18 Identities=22% Similarity=0.073 Sum_probs=14.9
Q ss_pred hhHHHHHHhHcCcEEeeC
Q 019867 107 KAIMEDLAILTGGQVLTG 124 (334)
Q Consensus 107 ~~~Ledia~~tG~~ii~~ 124 (334)
...|++||..+||+.+.-
T Consensus 142 ~~~l~~ia~~~gG~~~~~ 159 (171)
T cd01461 142 TYLLERLAREGRGIARRI 159 (171)
T ss_pred HHHHHHHHHcCCCeEEEe
Confidence 568999999999987643
No 50
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=42.73 E-value=48 Score=25.62 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=33.3
Q ss_pred HhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcE
Q 019867 57 ASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 120 (334)
Q Consensus 57 ~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ 120 (334)
.++.+.+...-+|++++|+++.....|..--.+..++++=|. . .++|-.+||-.
T Consensus 21 t~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~--s--------~~~LGkAcgi~ 74 (84)
T PRK13600 21 TLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFK--S--------KHALGKHVGIN 74 (84)
T ss_pred HHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEC--C--------HHHHHHHhCCC
Confidence 344554555679999999999987765532223335554332 2 45677777643
No 51
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=42.10 E-value=34 Score=29.66 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=33.0
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.+.. +.+..+|....+.|..++++.-+.+
T Consensus 139 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 139 AGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 34566799999999986654 3566777777677888888876553
No 52
>PLN02512 acetylglutamate kinase
Probab=41.57 E-value=1.3e+02 Score=28.87 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=28.9
Q ss_pred HHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhcC--ccccccH
Q 019867 184 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG--IVPGSGV 234 (334)
Q Consensus 184 eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g--vVpGGGa 234 (334)
-.+.+|.|++.+|++||+.-.. ++...++.+.+...+. .... +|.|||.
T Consensus 40 pyi~~~~~~tiVIKlGGs~i~d-~~~~~~~~~di~~l~~-~g~~iVlVHGgG~ 90 (309)
T PLN02512 40 PFIQRFRGKTVVVKYGGAAMKD-PELKAGVIRDLVLLSC-VGLRPVLVHGGGP 90 (309)
T ss_pred HHHHHHCCCeEEEEECCeeccC-hhHHHHHHHHHHHHHH-CCCCEEEEECCcH
Confidence 4677888999999999977322 2223333333332221 1112 6899988
No 53
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=41.42 E-value=47 Score=25.40 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=40.1
Q ss_pred HHhhHHHHhCCcEEEEec-cccccchhhhhhcccCCcceEEEEeccC-cccchhhHHHHHHhHcCcEEeeC
Q 019867 56 QASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAAG-LAEDRKAIMEDLAILTGGQVLTG 124 (334)
Q Consensus 56 ~~le~i~~~~~~llIia~-~i~~~aL~~L~~n~~~g~~~v~aVk~p~-~g~~r~~~Ledia~~tG~~ii~~ 124 (334)
..|......-.|++.+.+ ++++..+..+-.. ++. -..+=||... ..+.+++..+.|+..||+.++..
T Consensus 7 ~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~-l~~-~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~ 75 (84)
T PF01985_consen 7 KFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDA-LEK-HELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQV 75 (84)
T ss_dssp HHHHHHHTTC--SEEE-TTSS-HHHHHHHHHH-HHH-HSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHhcCCCCeEEECCCCCCHHHHHHHHHH-HHh-CCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 345555555579999976 8988888764321 111 2344455444 33446788899999999999865
No 54
>smart00574 POX domain associated with HOX domains.
Probab=37.99 E-value=58 Score=27.66 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHHHH
Q 019867 204 AEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKL 246 (334)
Q Consensus 204 ~~~~E~~~~i~DAl~~~r~a~~~-gvVpGGGaael~~s~~L~~~ 246 (334)
..++|.++|++-...-++..+.. ..|+|+|++-.+.+.+|...
T Consensus 84 ~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~ 127 (140)
T smart00574 84 SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTI 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 36778888888888878777765 57899999999988777643
No 55
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=37.50 E-value=19 Score=36.72 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHcC
Q 019867 210 KLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT 248 (334)
Q Consensus 210 ~~~i~DAl~~~r~a~~~gvVpGGGaael~~s~~L~~~~~ 248 (334)
++.+.+|+..+|++.++=+|.|||+-+-.+...|..+..
T Consensus 216 ~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E 254 (617)
T COG3962 216 ERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAE 254 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHH
Confidence 356788999999999999999999988888888877654
No 56
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=35.11 E-value=31 Score=33.17 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=38.6
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHH-hCCcEEEEeccccccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMM-QGQSLLVVAEDVENEV 79 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~-~~~~llIia~~i~~~a 79 (334)
.+.-+..|.+|+.|.++.+. .+++|+||.+.+ .+.|.|-+.-++++-+
T Consensus 140 GRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~ 193 (352)
T COG4148 140 GRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVL 193 (352)
T ss_pred HHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHH
Confidence 35567889999999998776 479999998774 5789999988776644
No 57
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=34.28 E-value=77 Score=25.80 Aligned_cols=78 Identities=21% Similarity=0.349 Sum_probs=47.1
Q ss_pred cEEEeecCCChhHhHHHHHHHhh--cceee-ee----------------------------eEEeecCeEEEeeccCCCC
Q 019867 2 KVGTTAANGDGEIGELIAKVFEK--GWEND-LI----------------------------TIFVLDGALVLIYDTKISN 50 (334)
Q Consensus 2 ~va~isan~d~~~g~lia~a~~~--G~~~~-~~----------------------------~~~~l~~p~Ill~d~~i~~ 50 (334)
+|+.+=++ -.+|+.|++++.+ |+++- .+ ....+++|- .+.|++ .
T Consensus 2 rV~i~G~~--GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~D-VvIDfT--~ 76 (124)
T PF01113_consen 2 RVGIVGAS--GRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEAD-VVIDFT--N 76 (124)
T ss_dssp EEEEETTT--SHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-S-EEEEES---
T ss_pred EEEEECCC--CHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCC-EEEEcC--C
Confidence 56655554 4799999999887 44433 11 011222222 344453 6
Q ss_pred hHHHHHHhhHHHHhCCcEEEEeccccccchhhhh
Q 019867 51 SNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIA 84 (334)
Q Consensus 51 ~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~ 84 (334)
++.....++.+.++|.|+|+-.-+++++-+..|-
T Consensus 77 p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~ 110 (124)
T PF01113_consen 77 PDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELE 110 (124)
T ss_dssp HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHH
T ss_pred hHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHH
Confidence 7778888888899999999988888776655544
No 58
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=33.21 E-value=1.6e+02 Score=23.47 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=46.7
Q ss_pred HHHhhHHHHhCCcEEEEec-cccccchhhhhh-cccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeC
Q 019867 55 RQASLPCMMQGQSLLVVAE-DVENEVLGDIAT-DFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 124 (334)
Q Consensus 55 ~~~le~i~~~~~~llIia~-~i~~~aL~~L~~-n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~ 124 (334)
..+|..-..+-.|+|.|.+ ++++.++.-+-. -.-++.++|-..+.- .+.+++..+.||..||+.++..
T Consensus 7 ~~~Lrs~Ah~l~piv~IGk~Glte~vi~Ei~~aL~~reLIKVkvl~~~--~edr~eia~~l~~~~~a~lVqv 76 (97)
T COG1534 7 KRFLRSKAHHLKPIVQIGKNGLTEGVIKEIDRALEARELIKVKVLQNA--REDKKEIAEALAEETGAELVQV 76 (97)
T ss_pred HHHHHHhhccCCceEEecCCccCHHHHHHHHHHHHhCCcEEEEeeccc--hhhHHHHHHHHHHHhCCEEeee
Confidence 4456655556689999976 889988876431 112345666666632 3567888999999999988743
No 59
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=32.96 E-value=1.3e+02 Score=26.24 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=15.3
Q ss_pred hhHHHHHHhHcCcEEeeC
Q 019867 107 KAIMEDLAILTGGQVLTG 124 (334)
Q Consensus 107 ~~~Ledia~~tG~~ii~~ 124 (334)
...|+.||..|||+.+..
T Consensus 148 ~~~L~~ia~~tgG~~~~~ 165 (183)
T cd01453 148 MHICKEICKATNGTYKVI 165 (183)
T ss_pred HHHHHHHHHHhCCeeEee
Confidence 357999999999998865
No 60
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=32.87 E-value=56 Score=30.59 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=38.2
Q ss_pred eEEeecCeEEEeeccCCCChH-----HHHHHhhHHHHhCCcEEEEecccccc
Q 019867 32 TIFVLDGALVLIYDTKISNSN-----VIRQASLPCMMQGQSLLVVAEDVENE 78 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~-----~i~~~le~i~~~~~~llIia~~i~~~ 78 (334)
.++-..+|.+|++|.+...++ ++..+|...++.|+.++++.-|+..-
T Consensus 151 ARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v 202 (254)
T COG1121 151 ARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLV 202 (254)
T ss_pred HHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHh
Confidence 566778999999999977654 68888999998899999998776543
No 61
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.76 E-value=58 Score=28.43 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=32.3
Q ss_pred EEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEeccccc
Q 019867 33 IFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVEN 77 (334)
Q Consensus 33 ~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~~ 77 (334)
..-+.+|.+++.|.+.+.. ..+..+++...+.|+.++++.-+.+.
T Consensus 121 ~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 121 VELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred HHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChH
Confidence 3455689999999986654 34666777766667888888777653
No 62
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=31.92 E-value=1.2e+02 Score=24.22 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=45.0
Q ss_pred HHHhhHHHHhCCcEEEEec-cccccchhhhhhc-ccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeC
Q 019867 55 RQASLPCMMQGQSLLVVAE-DVENEVLGDIATD-FTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 124 (334)
Q Consensus 55 ~~~le~i~~~~~~llIia~-~i~~~aL~~L~~n-~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~ 124 (334)
..+|.....+=.|+|.|.+ ++++.++..+-.. .-+..++|-..+ ..++.+++..+.||..||+.++..
T Consensus 8 r~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~--~~~~~~~e~~~~i~~~~~ae~Vq~ 77 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIAT--EDRETKTLIVEAIVRETGACNVQV 77 (97)
T ss_pred HHHHHHhcCCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecC--CChhHHHHHHHHHHHHHCCEEEee
Confidence 4556665555579999976 9999888764311 112234444332 234557888899999999998854
No 63
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=31.83 E-value=1.7e+02 Score=27.86 Aligned_cols=65 Identities=8% Similarity=0.158 Sum_probs=46.3
Q ss_pred CcEEEeecCCChhHhHHHHHHHhhcceeeeeeEEeecCeEEEeeccCC---CChHHHHHHhhHHHHhC----CcEEEEe-
Q 019867 1 MKVGTTAANGDGEIGELIAKVFEKGWENDLITIFVLDGALVLIYDTKI---SNSNVIRQASLPCMMQG----QSLLVVA- 72 (334)
Q Consensus 1 ~~va~isan~d~~~g~lia~a~~~G~~~~~~~~~~l~~p~Ill~d~~i---~~~~~i~~~le~i~~~~----~~llIia- 72 (334)
.+||.|||-+-..++..+..+-.+ +-...|.++...+ ..+.+|...|+.+.+.+ ..++|++
T Consensus 15 ~~I~vITs~~gAa~~D~~~~~~~r-----------~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~R 83 (319)
T PF02601_consen 15 KRIAVITSPTGAAIQDFLRTLKRR-----------NPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIR 83 (319)
T ss_pred CEEEEEeCCchHHHHHHHHHHHHh-----------CCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEec
Confidence 478999998888888877766653 3335566777766 66788999999987765 5666665
Q ss_pred cccc
Q 019867 73 EDVE 76 (334)
Q Consensus 73 ~~i~ 76 (334)
+|-+
T Consensus 84 GGGs 87 (319)
T PF02601_consen 84 GGGS 87 (319)
T ss_pred CCCC
Confidence 3443
No 64
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=31.41 E-value=53 Score=27.89 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=31.0
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
.+.-+.+|.++++|.+.+.. +.+..++....+.+..++++.-+.+
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 34466789999999986554 3466667666666777777766544
No 65
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=31.20 E-value=63 Score=28.42 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=32.3
Q ss_pred eEEeecCeEEEeeccCCCChH-----HHHHHhhHHHHhCCcEEEEeccccc
Q 019867 32 TIFVLDGALVLIYDTKISNSN-----VIRQASLPCMMQGQSLLVVAEDVEN 77 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~-----~i~~~le~i~~~~~~llIia~~i~~ 77 (334)
...-+.+|.+++.|.+-+..+ .+..+|+...+.+..++++.-+.+.
T Consensus 141 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 191 (204)
T PRK13538 141 ARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP 191 (204)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh
Confidence 455677999999999866543 4666666666667778887665443
No 66
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=30.58 E-value=56 Score=30.29 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=43.0
Q ss_pred HHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeC
Q 019867 52 NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 124 (334)
Q Consensus 52 ~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~ 124 (334)
+++.++.+.+.+.| +.+++--+|.+++..|.. +++-++|.++.--.-...|+.+|. ||-.++-+
T Consensus 56 e~~~~L~~~~~~~g--i~f~stpfd~~s~d~l~~------~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlS 119 (241)
T PF03102_consen 56 EQHKELFEYCKELG--IDFFSTPFDEESVDFLEE------LGVPAYKIASGDLTNLPLLEYIAK-TGKPVILS 119 (241)
T ss_dssp HHHHHHHHHHHHTT---EEEEEE-SHHHHHHHHH------HT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE
T ss_pred HHHHHHHHHHHHcC--CEEEECCCCHHHHHHHHH------cCCCEEEeccccccCHHHHHHHHH-hCCcEEEE
Confidence 46677777777766 777888889999999864 457788887755555678888888 88777765
No 67
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=30.24 E-value=59 Score=28.74 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=32.6
Q ss_pred eEEeecCeEEEeeccCCCChH-----HHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNSN-----VIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~-----~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.+..+ .+..++....+.|..++++.-+.+
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~ 199 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN 199 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 455677999999999876543 466677776666778888876654
No 68
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=30.18 E-value=56 Score=28.80 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=32.4
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.+.. ..+..+++...+.|+.+++++-+.+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 198 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 34567799999999986655 3566777776666778888766543
No 69
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=29.06 E-value=77 Score=26.87 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHHHH
Q 019867 205 EVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKL 246 (334)
Q Consensus 205 ~~~E~~~~i~DAl~~~r~a~~~-gvVpGGGaael~~s~~L~~~ 246 (334)
.++|.++|++-...=++..+.. ..|.|.|++-.+.+.+|+..
T Consensus 85 mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqam 127 (140)
T PF07526_consen 85 MLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAM 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 5677777777777777666655 36899999999988877654
No 70
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=29.04 E-value=67 Score=33.10 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=37.8
Q ss_pred eEEeecCeEEEeeccCCCC-----hHHHHHHhhHHHHhCCcEEEEecccccc
Q 019867 32 TIFVLDGALVLIYDTKISN-----SNVIRQASLPCMMQGQSLLVVAEDVENE 78 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~-----~~~i~~~le~i~~~~~~llIia~~i~~~ 78 (334)
.++-..+|+||++|.+-.- -.+|..++....+.|+.+|+++.+..+.
T Consensus 413 arwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEl 464 (500)
T COG1129 413 ARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPEL 464 (500)
T ss_pred HHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence 4556678999999998544 4689999999999999999988766543
No 71
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=28.92 E-value=90 Score=25.49 Aligned_cols=62 Identities=18% Similarity=0.065 Sum_probs=37.5
Q ss_pred HHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeCCCCC-cccCC
Q 019867 55 RQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYF 133 (334)
Q Consensus 55 ~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~~~~~-~l~~~ 133 (334)
..+.+.+.++++|++++..++...- -.+.+..++..+|+.++..-.+. .+.+-
T Consensus 2 ~~~~~~L~~A~rP~il~G~g~~~~~--------------------------a~~~l~~lae~~~~Pv~~t~~~kg~i~~~ 55 (137)
T PF00205_consen 2 DEAADLLSSAKRPVILAGRGARRSG--------------------------AAEELRELAEKLGIPVATTPMGKGVIPED 55 (137)
T ss_dssp HHHHHHHHH-SSEEEEE-HHHHHTT--------------------------CHHHHHHHHHHHTSEEEEEGGGTTSSTTT
T ss_pred HHHHHHHHhCCCEEEEEcCCcChhh--------------------------HHHHHHHHHHHHCCCEEecCccccccCCC
Confidence 3456677788999999865433110 13568899999999998775333 23333
Q ss_pred CCCCceeee
Q 019867 134 VPLKLGSCK 142 (334)
Q Consensus 134 ~~~~LG~a~ 142 (334)
.+.++|..+
T Consensus 56 hp~~~G~~g 64 (137)
T PF00205_consen 56 HPLFLGYLG 64 (137)
T ss_dssp STTEEEESC
T ss_pred CchhcccCC
Confidence 455566433
No 72
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=28.70 E-value=71 Score=27.94 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=32.5
Q ss_pred EEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccccc
Q 019867 33 IFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVENE 78 (334)
Q Consensus 33 ~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~~~ 78 (334)
..-+.+|.+++.|.+.+.. +.+..+++...+.++.++++.-+...+
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 174 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSE 174 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHH
Confidence 3455689999999986554 346667777666677888887776533
No 73
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=28.56 E-value=62 Score=28.93 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=32.7
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.+.. +.+..+|..+.+.+..++++.-+.+
T Consensus 145 a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 194 (232)
T cd03218 145 ARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR 194 (232)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45566799999999986654 3567777777767778888766544
No 74
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=28.51 E-value=60 Score=28.47 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=32.4
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.+.. +.+..+|....+.|..++++.-+.+
T Consensus 138 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 187 (205)
T cd03226 138 AAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE 187 (205)
T ss_pred HHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 34566799999999987664 3566677776666778888776554
No 75
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=28.24 E-value=74 Score=28.07 Aligned_cols=45 Identities=9% Similarity=0.102 Sum_probs=32.9
Q ss_pred EEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEeccccc
Q 019867 33 IFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVEN 77 (334)
Q Consensus 33 ~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~~ 77 (334)
..-+.+|.+++.|.+.+.. +++..+|....+.|..++++.-+.+.
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 189 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG 189 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 4466789999999986654 45677777766668888888766543
No 76
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=27.97 E-value=99 Score=22.95 Aligned_cols=32 Identities=38% Similarity=0.594 Sum_probs=22.9
Q ss_pred EccCCHhHHHHHHHHHHHHHHHHHHHhhcCccccccHHH
Q 019867 198 VCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVAL 236 (334)
Q Consensus 198 vgG~t~~~~~E~~~~i~DAl~~~r~a~~~gvVpGGGaae 236 (334)
|.|.|+. |.|.-|.||+..- ++..+||=|+-.
T Consensus 13 v~g~s~e---el~~~I~daIqsg----EEk~LPGLGVlF 44 (68)
T PRK02955 13 VSGNSKE---ELEGTIVDAIQSG----EEKMLPGLGVLF 44 (68)
T ss_pred ccCCCHH---HHHHHHHHHHhcc----chhcCCcchhHH
Confidence 4566654 5566788887644 788999999844
No 77
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=27.62 E-value=1.8e+02 Score=22.90 Aligned_cols=68 Identities=18% Similarity=0.124 Sum_probs=44.8
Q ss_pred HHHhhHHHHhCCcEEEEec-cccccchhhhhhc-ccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEeeC
Q 019867 55 RQASLPCMMQGQSLLVVAE-DVENEVLGDIATD-FTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 124 (334)
Q Consensus 55 ~~~le~i~~~~~~llIia~-~i~~~aL~~L~~n-~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii~~ 124 (334)
..+|......=.|++.|.+ ++++.++..+-.. .-+..++|-..+ ...+.+++..+.||..||+.++..
T Consensus 6 r~~Lr~~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~--~~~~~~~e~a~~i~~~~~a~~Vq~ 75 (95)
T TIGR00253 6 KRHLRGKAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVAT--EDREDKTLIAEALVKETGACNVQV 75 (95)
T ss_pred HHHHHHHhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecC--CChhHHHHHHHHHHHHHCCEEEEE
Confidence 3455555555579999976 9999888764321 122345555433 223556788999999999998865
No 78
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=27.43 E-value=65 Score=28.85 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=32.7
Q ss_pred EEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEeccccc
Q 019867 33 IFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVEN 77 (334)
Q Consensus 33 ~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~~ 77 (334)
..-+.+|.+++.|.+.+.. ..+..+|....+.|+.+++++-+.+.
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 205 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV 205 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 4456799999999986654 35666777776677888888766553
No 79
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=27.26 E-value=1.5e+02 Score=27.80 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=58.0
Q ss_pred hHHHHHHHhh----cceee----ee--eEEeecCeEEEeeccCCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhh
Q 019867 15 GELIAKVFEK----GWEND----LI--TIFVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIA 84 (334)
Q Consensus 15 g~lia~a~~~----G~~~~----~~--~~~~l~~p~Ill~d~~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~ 84 (334)
|-.|-+|.++ |+.++ ++ -+.+.+-|.||++=...=----+.++++.+++.|..=||+-.---+++-.++-
T Consensus 59 GpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~ 138 (263)
T CHL00200 59 GPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLIS 138 (263)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHH
Confidence 4444444444 66655 22 22345568888775521101135668889999998877776532344444433
Q ss_pred hcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEEe
Q 019867 85 TDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVL 122 (334)
Q Consensus 85 ~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~ii 122 (334)
.-+..|.-.+..|. |. ...+.++.|+....+=++
T Consensus 139 ~~~~~gi~~I~lv~-Pt---T~~eri~~i~~~a~gFIY 172 (263)
T CHL00200 139 VCNLYNIELILLIA-PT---SSKSRIQKIARAAPGCIY 172 (263)
T ss_pred HHHHcCCCEEEEEC-CC---CCHHHHHHHHHhCCCcEE
Confidence 33334444555554 43 234568888888876555
No 80
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=27.26 E-value=69 Score=28.15 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=32.0
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+-... +.+..++..+.+.|..++++.-+.+
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~ 196 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG 196 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45567799999999986554 3466777777666777777765543
No 81
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=27.15 E-value=67 Score=29.01 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=32.1
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.|++.|.+.+.. +.+..++..+.+.++.++++.-+.+
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45567799999999986665 3466666666666777888766543
No 82
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=27.11 E-value=66 Score=28.78 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=33.1
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.+++.|.+.+.. +.+..++....+.|..++++.-+.+
T Consensus 125 aral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~ 174 (223)
T TIGR03771 125 ARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174 (223)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45577899999999986654 3567777777666777888766554
No 83
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=27.02 E-value=69 Score=28.81 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=31.7
Q ss_pred EEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 33 IFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 33 ~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
..-+.+|.++++|.+.+.. +.+..+|....+.|..++++.-+.+
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~ 205 (243)
T TIGR01978 157 QMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205 (243)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH
Confidence 4456789999999986654 3566777777666777888766554
No 84
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=26.83 E-value=68 Score=28.28 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=31.5
Q ss_pred EEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 33 IFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 33 ~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
..-+.+|.+++.|.+-+.. ..+..++....+.|..++++.-+.+
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~ 193 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG 193 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4456799999999986654 3466677776666777888776654
No 85
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=26.64 E-value=79 Score=27.26 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=29.5
Q ss_pred EEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEeccc
Q 019867 33 IFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDV 75 (334)
Q Consensus 33 ~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i 75 (334)
..-+.+|.++++|.+.... +.+..++....+.+..++++.-+.
T Consensus 117 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 117 RWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred HHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3456789999999986554 346666776666677777776554
No 86
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=26.30 E-value=70 Score=28.45 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=32.3
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.+++.|.+.+.. +.+..+|....+.|..++++.-+.+
T Consensus 136 aral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~ 185 (223)
T TIGR03740 136 AIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS 185 (223)
T ss_pred HHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 34567799999999986654 3566777776666777888766544
No 87
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=26.02 E-value=78 Score=27.80 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=30.6
Q ss_pred EEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 33 IFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 33 ~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
..-+.+|.|+++|.+.+.. +.+..+|..+.+.++.+++++-+.+
T Consensus 117 ral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~ 165 (200)
T cd03217 117 QLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR 165 (200)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 3455689999999986554 3466667666666777888776654
No 88
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=25.96 E-value=80 Score=26.98 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=29.1
Q ss_pred EeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 34 FVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 34 ~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
.-+.+|.++++|.+.... +.+..++....+.|..++++.-+.+
T Consensus 110 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 110 ALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred HHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 355688899999876554 3466667666666777777766654
No 89
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=25.84 E-value=81 Score=27.98 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=31.7
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+-+.. +.+..+++...+.|..+++++-+.+
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 149 ARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 35567799999999986665 3466667666667777777765443
No 90
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=25.47 E-value=3.4e+02 Score=24.93 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=46.4
Q ss_pred cEEEeecCCChhHhHHHHHHHhh-cceeeee------------eEEeecCeEEEeeccCCCChHHHHHHhhHH-HHhCCc
Q 019867 2 KVGTTAANGDGEIGELIAKVFEK-GWENDLI------------TIFVLDGALVLIYDTKISNSNVIRQASLPC-MMQGQS 67 (334)
Q Consensus 2 ~va~isan~d~~~g~lia~a~~~-G~~~~~~------------~~~~l~~p~Ill~d~~i~~~~~i~~~le~i-~~~~~~ 67 (334)
.|+.++.. .+.||+-|++.+.+ |...-.. ..-.+.+..-+ .+-+++..+....|+.. +..|.|
T Consensus 15 k~~~vtGg-~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF--~~DVS~a~~v~~~l~e~~k~~g~p 91 (256)
T KOG1200|consen 15 KVAAVTGG-SSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAF--SCDVSKAHDVQNTLEEMEKSLGTP 91 (256)
T ss_pred ceeEEecC-CchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCcccee--eeccCcHHHHHHHHHHHHHhcCCC
Confidence 46777764 68899999999998 6443200 00011111122 23467788888866654 456766
Q ss_pred -EEEEeccccccch
Q 019867 68 -LLVVAEDVENEVL 80 (334)
Q Consensus 68 -llIia~~i~~~aL 80 (334)
+|+-|-+|..+.+
T Consensus 92 svlVncAGItrD~~ 105 (256)
T KOG1200|consen 92 SVLVNCAGITRDGL 105 (256)
T ss_pred cEEEEcCccccccc
Confidence 5555779988864
No 91
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=25.43 E-value=71 Score=28.71 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=31.2
Q ss_pred eEEeecCeEEEeeccCCCChH-----HHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNSN-----VIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~-----~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.|++.|.+.+..+ .+..++....+.|+.++++.-+.+
T Consensus 149 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (237)
T PRK11614 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN 198 (237)
T ss_pred HHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 344667999999999866543 466667766666777777765543
No 92
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=25.40 E-value=74 Score=27.96 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=32.3
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.+.. +.+..+|....+.|+.++++.-+.+
T Consensus 146 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~ 195 (211)
T cd03225 146 AGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD 195 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 34567799999999986654 3566677766666778888776544
No 93
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=25.35 E-value=76 Score=28.58 Aligned_cols=46 Identities=9% Similarity=0.169 Sum_probs=33.1
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEeccccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVEN 77 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~~ 77 (334)
...-+.+|.++++|.+.+.. ..+..++....+.|+.+++++-+.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 198 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGF 198 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 34567799999999986654 35667777766667788888766543
No 94
>PRK10908 cell division protein FtsE; Provisional
Probab=25.03 E-value=78 Score=28.14 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=32.2
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.+.. +.+..+|..+.+.+..+++++-+.+
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG 198 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 34566799999999986654 3466777777666777888876544
No 95
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=24.63 E-value=82 Score=28.57 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=31.2
Q ss_pred EEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 33 IFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 33 ~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
..-+.+|.++++|.+.+.. ..+..+|....+.|..+++++-+.+
T Consensus 164 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~ 212 (252)
T CHL00131 164 QMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212 (252)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 4456789999999987665 3466666666666777888776544
No 96
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.56 E-value=75 Score=27.93 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=31.0
Q ss_pred EEeecCeEEEeeccCCCChH-----HHHHHhhHHHHhCCcEEEEecccc
Q 019867 33 IFVLDGALVLIYDTKISNSN-----VIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 33 ~~~l~~p~Ill~d~~i~~~~-----~i~~~le~i~~~~~~llIia~~i~ 76 (334)
..-+.+|++++.|.+-+..+ .+..+++...+.++.++++.-+.+
T Consensus 141 ~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 189 (210)
T cd03269 141 AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME 189 (210)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 44567999999999866543 466667766666777777766544
No 97
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=24.48 E-value=77 Score=28.72 Aligned_cols=44 Identities=9% Similarity=0.155 Sum_probs=31.4
Q ss_pred EEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 33 IFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 33 ~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
..-+.+|.++++|.+-+.. ..+..+|+.+.+.|..++++.-+.+
T Consensus 157 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~ 205 (250)
T PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS 205 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4456789999999986554 3566777777666777777766554
No 98
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.47 E-value=83 Score=27.91 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=32.2
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHh-CCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQ-GQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~-~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.+.. +.+..+|....+. |..++++.-+.+
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~ 193 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME 193 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45567799999999987654 3466667666665 778888776654
No 99
>PF03135 CagE_TrbE_VirB: CagE, TrbE, VirB family, component of type IV transporter system; InterPro: IPR018145 This domain is found in (amongst others): the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration []. Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro []. Similar type IV transport systems are also found in other bacteria. This domain is also found in proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding
Probab=24.47 E-value=3.7e+02 Score=23.61 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=21.3
Q ss_pred eEEEEEccCCHhHHHHHHHHHHHHHHH
Q 019867 193 YAVLKVCGHGKAEVREKKLKITNALHA 219 (334)
Q Consensus 193 ~~tI~vgG~t~~~~~E~~~~i~DAl~~ 219 (334)
..+|.|.|.|+.++++.-+.+..+|+.
T Consensus 150 ~~~i~v~~~~~~~l~~~~~~v~~~l~~ 176 (205)
T PF03135_consen 150 HFTIVVFADDPEELDDKVAEVSSALNN 176 (205)
T ss_pred EEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 789999999998888877666665553
No 100
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=24.43 E-value=82 Score=27.82 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=32.5
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.+.. +.+..+|....+.|..+++++-+.+
T Consensus 148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 197 (218)
T cd03266 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ 197 (218)
T ss_pred HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 34567799999999986665 3466677776666778888776554
No 101
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=24.43 E-value=69 Score=28.13 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=31.5
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+-+.. +.+..+|....+.|..++++.-+.+
T Consensus 138 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 187 (208)
T cd03268 138 ALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS 187 (208)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 34466789999999986554 3566677776666777777765544
No 102
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=24.34 E-value=99 Score=27.10 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=30.5
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEeccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDV 75 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i 75 (334)
...-+.+|.+++.|.+.+.. +++..++...++.|..++++.-+.
T Consensus 137 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 185 (201)
T cd03231 137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185 (201)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 34566799999999986654 356666666666677777775543
No 103
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=24.32 E-value=95 Score=27.70 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=33.1
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEeccccccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVENEV 79 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~~~a 79 (334)
...-+.+|.+++.|.+.+.. ..+..++....+.+..++++.-+..+++
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~ 207 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDL 207 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHH
Confidence 34456689999999986554 3566677766666777888776664333
No 104
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=24.29 E-value=2.1e+02 Score=25.57 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=33.8
Q ss_pred eecCeEEEeeccCCCChHHHHHHhhHHHHhCC-cEEEEeccccccchhhhhhcc
Q 019867 35 VLDGALVLIYDTKISNSNVIRQASLPCMMQGQ-SLLVVAEDVENEVLGDIATDF 87 (334)
Q Consensus 35 ~l~~p~Ill~d~~i~~~~~i~~~le~i~~~~~-~llIia~~i~~~aL~~L~~n~ 87 (334)
.+++-.|++.|--+.+=..+..+++.+.+.|. .+.+++==..+.++..+..+.
T Consensus 121 ~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~ll~~~~gl~~l~~~~ 174 (209)
T PRK00129 121 DIDERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCLVAAPEGIKALEEAH 174 (209)
T ss_pred cCCCCEEEEECCcccchHHHHHHHHHHHHcCCCEEEEEEEecCHHHHHHHHHHC
Confidence 45566688888888887888888888887773 333333333455555555443
No 105
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=24.26 E-value=72 Score=27.44 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=31.3
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHh-CCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQ-GQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~-~~~llIia~~i~ 76 (334)
.+.-+.+|.+++.|.+.... +.+..+++...+. +..++++.-+.+
T Consensus 109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 34567799999999986554 3566677776665 667777765544
No 106
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=24.15 E-value=93 Score=27.45 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=33.3
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHH-hCCcEEEEeccccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMM-QGQSLLVVAEDVEN 77 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~-~~~~llIia~~i~~ 77 (334)
...-+.+|.++++|.+.+.. +.+..++....+ .|+.++++.-+.+.
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred HHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 35567799999999987664 356667777665 47788888776553
No 107
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=24.15 E-value=78 Score=28.92 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=32.6
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.... +.+..+|..+.+.|+.++++.-+.+
T Consensus 164 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~ 213 (257)
T PRK10619 164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 213 (257)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45567799999999986654 3466677777666888888766544
No 108
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=24.05 E-value=89 Score=27.26 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=32.2
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.+++.|.+.+.. +.+..++....+.|..++++.-+.+
T Consensus 146 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 146 ARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred HHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 34566799999999986654 3566677766666778888876653
No 109
>PLN02825 amino-acid N-acetyltransferase
Probab=24.03 E-value=6.7e+02 Score=26.02 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=15.5
Q ss_pred HHhhhcCCeEEEEEccCC
Q 019867 185 RLAKLSGGYAVLKVCGHG 202 (334)
Q Consensus 185 R~~~lsg~~~tI~vgG~t 202 (334)
.+.++.|++-+|++||..
T Consensus 11 YI~~~rgktfVIk~gG~~ 28 (515)
T PLN02825 11 YIQGHRGSTFVVVISGEV 28 (515)
T ss_pred HHHHHCCCEEEEEECchh
Confidence 567889999999999965
No 110
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=23.98 E-value=1.4e+02 Score=28.14 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=30.8
Q ss_pred HHHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHH-hhcCccccccHHH
Q 019867 184 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA-KEEGIVPGSGVAL 236 (334)
Q Consensus 184 eR~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a-~~~gvVpGGGaae 236 (334)
-.+.+|+|+..+|++||..- .-++....+-+-+...+.. ++-=+|.|||..-
T Consensus 16 pyi~~~~~~~~VIk~gG~~~-~~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i 68 (284)
T CHL00202 16 PYIQKFRGRIMVIKYGGAAM-KNLILKADIIKDILFLSCIGLKIVVVHGGGPEI 68 (284)
T ss_pred HHHHHHcCCeEEEEEChHHh-cCcchHHHHHHHHHHHHHCCCcEEEEeCCcHHH
Confidence 46778999999999999652 1112233444444444331 1122789999843
No 111
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=23.95 E-value=55 Score=30.19 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=22.0
Q ss_pred CcEEEeecCCChhHhHHHHHHHhh
Q 019867 1 MKVGTTAANGDGEIGELIAKVFEK 24 (334)
Q Consensus 1 ~~va~isan~d~~~g~lia~a~~~ 24 (334)
++.|.|||-||.+-.+||++++.+
T Consensus 207 k~aavIsAEGds~aA~li~~sla~ 230 (271)
T KOG3083|consen 207 KKAAVISAEGDSKAAELIANSLAT 230 (271)
T ss_pred hhhheeecccchHHHHHHHHHHhh
Confidence 357899999999999999999997
No 112
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=23.68 E-value=83 Score=28.36 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=32.3
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
.+.-+.+|.++++|.+.+.. +.+..+++.+.+.|..++++.-+.+
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45567799999999987654 3466667776666777888776554
No 113
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=23.68 E-value=81 Score=29.22 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=32.6
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.+.. +.+..+|...++.|..++++.-+.+
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 34566799999999987664 3566777777666777888876554
No 114
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.57 E-value=86 Score=27.66 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=31.7
Q ss_pred eEEeecCeEEEeeccCCCChH-----HHHHHhhHHHHh-CCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNSN-----VIRQASLPCMMQ-GQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~-----~i~~~le~i~~~-~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+-+..+ .+..++....+. |..++++.-+.+
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 193 (214)
T cd03297 143 ARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193 (214)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH
Confidence 355677999999999866543 456666666554 778888876554
No 115
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.48 E-value=95 Score=29.01 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=34.8
Q ss_pred EEeecCeEEEeeccCCCChHHH-----HHH-hhHHHHhCCcEEEEeccccccc
Q 019867 33 IFVLDGALVLIYDTKISNSNVI-----RQA-SLPCMMQGQSLLVVAEDVENEV 79 (334)
Q Consensus 33 ~~~l~~p~Ill~d~~i~~~~~i-----~~~-le~i~~~~~~llIia~~i~~~a 79 (334)
+.-..+|.||+.|.+....+.+ ... ++...+.++.+|+++-||++.+
T Consensus 143 RAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv 195 (248)
T COG1116 143 RALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAV 195 (248)
T ss_pred HHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence 4456789999999998877643 333 4445567788999999998765
No 116
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=23.47 E-value=1e+02 Score=27.30 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=31.0
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAED 74 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~ 74 (334)
...-+.+|.+++.|.+.+.. +.+..+|..+.+.|..++++.-+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~ 208 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 34466799999999986554 35666777776667788887655
No 117
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=23.44 E-value=87 Score=27.69 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=31.8
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.+++.|.+.+.. +.+..+|....+.+..++++.-+.+
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 193 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR 193 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 34456799999999986554 3566777776666777888766544
No 118
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=23.36 E-value=1.4e+02 Score=22.79 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=19.3
Q ss_pred hhHHHHhCCcEEEEeccccccchhhhh
Q 019867 58 SLPCMMQGQSLLVVAEDVENEVLGDIA 84 (334)
Q Consensus 58 le~i~~~~~~llIia~~i~~~aL~~L~ 84 (334)
++.+.+....|||++.|.++.....|.
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~ 43 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIK 43 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHH
Confidence 445545556799999999987766554
No 119
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=23.20 E-value=1.3e+02 Score=27.01 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=52.0
Q ss_pred eEEeecCeEEEeeccCCCChHHHHHHhhHHHHhCC---cEEEEeccccccchhhhhhcccCCcceEEEEe---------c
Q 019867 32 TIFVLDGALVLIYDTKISNSNVIRQASLPCMMQGQ---SLLVVAEDVENEVLGDIATDFTCTTEKVCIIK---------A 99 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~~i~~~le~i~~~~~---~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk---------~ 99 (334)
.|..+++..++++|--+.+-..+..+++.+++.|. .+++++==.+++.+..+...+-.-.+-+++|. .
T Consensus 115 LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias~~Gl~~l~~~~P~v~I~ta~iD~~L~~~~~i~ 194 (207)
T PF14681_consen 115 LPEDIENRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSVIASPEGLERLLKAFPDVRIYTAAIDPELNENGYIV 194 (207)
T ss_dssp --TTGTTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEEHHHHHHHHHHSTTSEEEEEEEESEEETTSEEE
T ss_pred CCCCccCCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEEEecHHHHHHHHHhCCCeEEEEEEEccccCCCCCcc
Confidence 45556788899999999999999999999999884 35555555567788877766655445555553 5
Q ss_pred cCcccch
Q 019867 100 AGLAEDR 106 (334)
Q Consensus 100 p~~g~~r 106 (334)
||+||.-
T Consensus 195 PGlGD~G 201 (207)
T PF14681_consen 195 PGLGDAG 201 (207)
T ss_dssp SS-S-HH
T ss_pred CCCCChH
Confidence 7777753
No 120
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=23.07 E-value=2.3e+02 Score=25.36 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=37.0
Q ss_pred EeecCeEEEeeccCCCChHHHHHHhhHHHHhCCcEEEE-eccccccchhhhhhcc
Q 019867 34 FVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVV-AEDVENEVLGDIATDF 87 (334)
Q Consensus 34 ~~l~~p~Ill~d~~i~~~~~i~~~le~i~~~~~~llIi-a~~i~~~aL~~L~~n~ 87 (334)
..+++-.|++.|--+.+=..+..+++.+.+.|.+=+++ +-=..++.+..+...+
T Consensus 118 ~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~~ll~~~~gl~~l~~~~ 172 (207)
T TIGR01091 118 EDIDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSIVAAPEGIEAVEKAH 172 (207)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEEEEecCHHHHHHHHHHC
Confidence 34566678888888888888888899888888543333 3333556666655443
No 121
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.95 E-value=88 Score=28.06 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=32.4
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHH-hCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMM-QGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~-~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.+.. ..+..+|....+ .|..++++.-+.+
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 35566799999999986654 356667777665 3778888876654
No 122
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=22.88 E-value=89 Score=28.16 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=30.7
Q ss_pred EEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEeccc
Q 019867 33 IFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDV 75 (334)
Q Consensus 33 ~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i 75 (334)
..-+.+|.++++|.+-+.. +.+..+++.+.+.|..+++++-+.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 197 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence 4456799999999986554 345666777666677777776654
No 123
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=22.73 E-value=89 Score=28.02 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=31.3
Q ss_pred eEEeecCeEEEeeccCCCChH-----HHHHHhhHHHHh-CCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNSN-----VIRQASLPCMMQ-GQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~-----~i~~~le~i~~~-~~~llIia~~i~ 76 (334)
...-+.+|.|+++|.+.+..+ .+..++....+. |+.++++.-+.+
T Consensus 137 aral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 187 (230)
T TIGR02770 137 ALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG 187 (230)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 355667999999999876653 456667666654 677777766554
No 124
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=22.47 E-value=92 Score=28.44 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=33.1
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEeccccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVEN 77 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~~ 77 (334)
...-+.+|.++++|.+.+.. +.+..+|..+.+.|..++++.-+.+.
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNL 199 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 34466789999999986544 45677777776667788888765553
No 125
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=22.30 E-value=93 Score=27.31 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=31.2
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEeccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDV 75 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i 75 (334)
...-+.+|+++++|.+.+.. +.+..+++...+.|..+++++-+.
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~ 196 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK 196 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45567799999999986654 346666666666677777776654
No 126
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=22.19 E-value=1e+02 Score=27.39 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=31.8
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHh-CCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQ-GQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~-~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.+.. +.+..++....+. |..+++++-+.+
T Consensus 157 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 207 (228)
T cd03257 157 ARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG 207 (228)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 34567799999999987654 3466666666655 777888776654
No 127
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.02 E-value=96 Score=27.79 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=32.0
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHH-hCCcEEEEeccccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMM-QGQSLLVVAEDVEN 77 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~-~~~~llIia~~i~~ 77 (334)
...-+.+|.++++|.+.+.. ..+..+|....+ .|+.++++.-+.+.
T Consensus 156 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~ 207 (241)
T cd03256 156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL 207 (241)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 34566799999999986654 346666766655 37788888766543
No 128
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=21.94 E-value=86 Score=30.75 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=34.9
Q ss_pred eEEeecCeEEEeeccCCCChH-----HHHHHhhHHHHh--CCcEEEEeccccc
Q 019867 32 TIFVLDGALVLIYDTKISNSN-----VIRQASLPCMMQ--GQSLLVVAEDVEN 77 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~-----~i~~~le~i~~~--~~~llIia~~i~~ 77 (334)
.+.-..+|.++++|.+.+..+ ++...|..+.+. |.++|++.-+.++
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~e 201 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDD 201 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 355677999999999987764 567777777665 7889988877655
No 129
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.86 E-value=1.2e+02 Score=26.47 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=30.4
Q ss_pred eEEeecCeEEEeeccCCCChH-----HHHHHhhHHHHhCCcEEEEecc
Q 019867 32 TIFVLDGALVLIYDTKISNSN-----VIRQASLPCMMQGQSLLVVAED 74 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~-----~i~~~le~i~~~~~~llIia~~ 74 (334)
...-+.+|.+++.|.+.+..+ .+..+|....+.|..+++++-+
T Consensus 139 aral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 186 (200)
T PRK13540 139 LRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ 186 (200)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 355677999999999866643 4666677666667777777543
No 130
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=21.85 E-value=1.3e+02 Score=25.33 Aligned_cols=75 Identities=11% Similarity=0.235 Sum_probs=37.9
Q ss_pred cEEEeecCCChhHhH-HHHHHHhhcceee-ee-------------eEEeecCeE---EEeeccCCCChHHHHHHhhHHHH
Q 019867 2 KVGTTAANGDGEIGE-LIAKVFEKGWEND-LI-------------TIFVLDGAL---VLIYDTKISNSNVIRQASLPCMM 63 (334)
Q Consensus 2 ~va~isan~d~~~g~-lia~a~~~G~~~~-~~-------------~~~~l~~p~---Ill~d~~i~~~~~i~~~le~i~~ 63 (334)
+||.+|-- ..+|. ++..+.++|+.|- |+ +..-.++|. |+++=..+.+...+...+..+.+
T Consensus 3 ~valisQS--G~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f~~~~~~a~~ 80 (138)
T PF13607_consen 3 GVALISQS--GALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGDGRRFLEAARRAAR 80 (138)
T ss_dssp SEEEEES---HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-HHHHHHHHHHHCC
T ss_pred CEEEEECC--HHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence 47777653 44555 4455555566665 22 222334443 66666678888888887777766
Q ss_pred hCCcEEEEeccccccc
Q 019867 64 QGQSLLVVAEDVENEV 79 (334)
Q Consensus 64 ~~~~llIia~~i~~~a 79 (334)
. +|+|+.-.+-++..
T Consensus 81 ~-KPVv~lk~Grt~~g 95 (138)
T PF13607_consen 81 R-KPVVVLKAGRTEAG 95 (138)
T ss_dssp C-S-EEEEE-------
T ss_pred C-CCEEEEeCCCchhh
Confidence 6 89998876654443
No 131
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.66 E-value=1e+02 Score=26.32 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=28.1
Q ss_pred eecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEeccc
Q 019867 35 VLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDV 75 (334)
Q Consensus 35 ~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i 75 (334)
-..+|.+++.|.+-... ..+..+++...+.|..++++.-+.
T Consensus 110 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~ 155 (173)
T cd03230 110 LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155 (173)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 45689999999976554 356677777666666677765543
No 132
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=21.57 E-value=3.2e+02 Score=22.37 Aligned_cols=65 Identities=14% Similarity=0.270 Sum_probs=37.8
Q ss_pred HHHHHhhHHHHh----C--CcEEEEecccc----ccchhhhhhcccCCcceEEEEeccCcccchhhHHHHHHhHcCcEE
Q 019867 53 VIRQASLPCMMQ----G--QSLLVVAEDVE----NEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQV 121 (334)
Q Consensus 53 ~i~~~le~i~~~----~--~~llIia~~i~----~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r~~~Ledia~~tG~~i 121 (334)
++.+.|+.+.+. + +.++++.++.. ++.+..+- + ..+.+++.++-... +.....|+.||..+||+.
T Consensus 79 ~l~~aL~~a~~~~~~~~~~~~IilltDG~~~~~~~~i~~~v~-~-~~~~~~i~~~~~g~--~~~~~~L~~LA~~~~G~~ 153 (155)
T PF13768_consen 79 DLLAALRAALALLQRPGCVRAIILLTDGQPVSGEEEILDLVR-R-ARGHIRIFTFGIGS--DADADFLRELARATGGSF 153 (155)
T ss_pred cHHHHHHHHHHhcccCCCccEEEEEEeccCCCCHHHHHHHHH-h-cCCCceEEEEEECC--hhHHHHHHHHHHcCCCEE
Confidence 455566666554 1 34666776552 23343332 2 22456666665322 245689999999999974
No 133
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.52 E-value=99 Score=27.85 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=31.9
Q ss_pred eEEeecCeEEEeeccCCCChH-----HHHHHhhHHHHh-CCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNSN-----VIRQASLPCMMQ-GQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~-----~i~~~le~i~~~-~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.+..+ .+..+|....+. |+.++++.-+.+
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 198 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE 198 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 345667999999999876653 456666666654 778888876654
No 134
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=21.50 E-value=1e+02 Score=27.63 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=32.3
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHH-hCCcEEEEeccccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMM-QGQSLLVVAEDVEN 77 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~-~~~~llIia~~i~~ 77 (334)
...-+.+|.|+++|.+.+.. +.+..++..+.+ .|..++++.-+.+.
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 34566799999999986654 356667777655 47778888766543
No 135
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.43 E-value=1e+02 Score=26.43 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=28.3
Q ss_pred EEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHh-CCcEEEEeccc
Q 019867 33 IFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQ-GQSLLVVAEDV 75 (334)
Q Consensus 33 ~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~-~~~llIia~~i 75 (334)
..-+.+|.+++.|.+.... +.+..++....+. +..++++.-+.
T Consensus 113 ~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 161 (178)
T cd03229 113 RALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161 (178)
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3355688899999876554 3456666666665 66777776543
No 136
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.41 E-value=95 Score=28.67 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=31.7
Q ss_pred eEEeecCeEEEeeccCCCChH-----HHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNSN-----VIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~-----~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.+..+ .+..+|..+.+.|..++++.-+.+
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~ 197 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID 197 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 345667899999999866543 466677776666777777766544
No 137
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=21.39 E-value=3.3e+02 Score=23.21 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=15.1
Q ss_pred hhhHHHHHHhHcCcEEee
Q 019867 106 RKAIMEDLAILTGGQVLT 123 (334)
Q Consensus 106 r~~~Ledia~~tG~~ii~ 123 (334)
....|++||..|||+.+.
T Consensus 146 ~~~~l~~iA~~tgG~~~~ 163 (178)
T cd01451 146 RRGLAKDLARALGGQYVR 163 (178)
T ss_pred CccHHHHHHHHcCCeEEE
Confidence 356799999999999874
No 138
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=21.36 E-value=4.6e+02 Score=24.38 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=27.8
Q ss_pred HHhhhcCCeEEEEEccCCHhHHHHHHHHHHHHHHHHHHHhhcC--ccccccHH
Q 019867 185 RLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG--IVPGSGVA 235 (334)
Q Consensus 185 R~~~lsg~~~tI~vgG~t~~~~~E~~~~i~DAl~~~r~a~~~g--vVpGGGaa 235 (334)
.+.+|.++..+|++||++-.. ++..+++.+-+...+. .... +|.|||..
T Consensus 8 yi~~~~~~~~ViKlGGs~i~~-~~~~~~~~~~i~~l~~-~g~~~ViVhG~g~~ 58 (279)
T cd04250 8 YIQKFRGKTVVIKYGGNAMKD-EELKESFARDIVLLKY-VGINPVVVHGGGPE 58 (279)
T ss_pred HHHHHcCCEEEEEEChHHhcC-ccHHHHHHHHHHHHHH-CCCCEEEEcCCcHH
Confidence 456778889999999976321 1222334433332222 2223 77888883
No 139
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=21.20 E-value=1e+02 Score=30.16 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=34.4
Q ss_pred eEEeecCeEEEeeccCCCChH-----HHHHHhhHHHHh-CCcEEEEeccccc
Q 019867 32 TIFVLDGALVLIYDTKISNSN-----VIRQASLPCMMQ-GQSLLVVAEDVEN 77 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~-----~i~~~le~i~~~-~~~llIia~~i~~ 77 (334)
.+.-+.+|.++++|.+.+..+ ++...+..+.+. |.+++++.-+.++
T Consensus 146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e 197 (356)
T PRK11650 146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVE 197 (356)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 455678999999999987764 466667766654 8888888776643
No 140
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=21.17 E-value=1.1e+02 Score=26.68 Aligned_cols=44 Identities=9% Similarity=0.212 Sum_probs=31.2
Q ss_pred EEeecC--eEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 33 IFVLDG--ALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 33 ~~~l~~--p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
..-+.+ |.+++.|.+.+.. +.+...+....+.|+.++++.-+.+
T Consensus 100 ral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 100 SELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred HHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 445678 9999999986654 3466666666666788888776654
No 141
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=21.14 E-value=1.3e+02 Score=26.12 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=31.1
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEeccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDV 75 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i 75 (334)
...-+.+|.+++.|.+.+.. +.+..++....+.|..++++.-+.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 45577799999999986654 346666666656677777776544
No 142
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=20.98 E-value=1.1e+02 Score=27.56 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=31.5
Q ss_pred eEEeecCeEEEeeccCCCChH-----HHHHHhhHHHHh-CCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNSN-----VIRQASLPCMMQ-GQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~-----~i~~~le~i~~~-~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+-+..+ .+..+|+...+. |+.++++.-+.+
T Consensus 157 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~ 207 (243)
T TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD 207 (243)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 455677999999999866543 466667666554 777888766554
No 143
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=20.68 E-value=1.1e+02 Score=22.49 Aligned_cols=32 Identities=41% Similarity=0.543 Sum_probs=22.5
Q ss_pred EccCCHhHHHHHHHHHHHHHHHHHHHhhcCccccccHHH
Q 019867 198 VCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVAL 236 (334)
Q Consensus 198 vgG~t~~~~~E~~~~i~DAl~~~r~a~~~gvVpGGGaae 236 (334)
|.|.|+ +|.+.-|+||+..- ++..+||=|+-.
T Consensus 11 v~g~s~---~el~~~I~daI~sg----EE~~LPGLGVlF 42 (65)
T PF14098_consen 11 VKGSSK---EELKDTIEDAIQSG----EEKALPGLGVLF 42 (65)
T ss_pred ccCCCH---HHHHHHHHHHHhcc----chhcCCchHHHH
Confidence 345554 45666788887644 788999999844
No 144
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=20.62 E-value=1e+02 Score=28.03 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=32.2
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+-+.. +.+..+|....+.|..++++.-+.+
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~ 199 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN 199 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 35567799999999986654 3456666666656778888876655
No 145
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=20.47 E-value=2.6e+02 Score=27.32 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=28.1
Q ss_pred ceEEEEec----cCcccchhhHHHHHHhHcCcEEeeCCCC
Q 019867 92 EKVCIIKA----AGLAEDRKAIMEDLAILTGGQVLTGGSG 127 (334)
Q Consensus 92 ~~v~aVk~----p~~g~~r~~~Ledia~~tG~~ii~~~~~ 127 (334)
++|.-+++ ||+-+.-.+.++-++..|+|++..-+.|
T Consensus 31 vrI~nIRa~R~~PGL~~QHltaVra~~~i~~a~v~G~e~G 70 (341)
T COG0430 31 VRIENIRAGRANPGLKRQHLTAVRAAAEICNAEVEGAELG 70 (341)
T ss_pred eEEEEEccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecc
Confidence 55666664 7877777788999999999999877544
No 146
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=20.23 E-value=4.9e+02 Score=27.15 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=40.2
Q ss_pred hhHhHHHHHHHhh------ccee-e----ee-eEEeecCe--EEEeeccCCCCh-HHHHHHhhHHHHhCCcEEEEecccc
Q 019867 12 GEIGELIAKVFEK------GWEN-D----LI-TIFVLDGA--LVLIYDTKISNS-NVIRQASLPCMMQGQSLLVVAEDVE 76 (334)
Q Consensus 12 ~~~g~lia~a~~~------G~~~-~----~~-~~~~l~~p--~Ill~d~~i~~~-~~i~~~le~i~~~~~~llIia~~i~ 76 (334)
+.+.++|.+||+. |-.+ + +. +......| ...-.-.+-... +++..+.+.+.++.+|++++..++.
T Consensus 133 ~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~aa~~L~~AkrPvIl~G~G~~ 212 (550)
T COG0028 133 EDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGPEPAILPPYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVR 212 (550)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEcChhHhhcccccccccccccccCCCCCCcHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 5688999999987 4322 2 21 33233221 112222222222 7889999999999999999976654
Q ss_pred c
Q 019867 77 N 77 (334)
Q Consensus 77 ~ 77 (334)
.
T Consensus 213 ~ 213 (550)
T COG0028 213 R 213 (550)
T ss_pred c
Confidence 3
No 147
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=20.13 E-value=1.1e+02 Score=27.46 Aligned_cols=45 Identities=18% Similarity=0.076 Sum_probs=32.0
Q ss_pred eEEeecCeEEEeeccCCCCh-----HHHHHHhhHHHH-hCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNS-----NVIRQASLPCMM-QGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~-----~~i~~~le~i~~-~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.... +.+..+++...+ .|..++++.-+.+
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 149 IRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 45567899999999986554 346666776655 4778888876654
No 148
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=20.11 E-value=1.1e+02 Score=28.24 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=32.4
Q ss_pred eEEeecCeEEEeeccCCCChH-----HHHHHhhHHHHh-CCcEEEEeccccc
Q 019867 32 TIFVLDGALVLIYDTKISNSN-----VIRQASLPCMMQ-GQSLLVVAEDVEN 77 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~-----~i~~~le~i~~~-~~~llIia~~i~~ 77 (334)
...-+.+|.++++|.+.+..+ .+..+|+...+. |..++++.-+.+.
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~ 213 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRL 213 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 355677999999999876653 466677766654 7777777766543
No 149
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=20.03 E-value=1.9e+02 Score=26.60 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=43.7
Q ss_pred eEEEeeccCCCChHHHHHHhhHHHHhCCcEEEEeccccccchhhhhhcccCCcceEEEEeccCcccch------------
Q 019867 39 ALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDR------------ 106 (334)
Q Consensus 39 p~Ill~d~~i~~~~~i~~~le~i~~~~~~llIia~~i~~~aL~~L~~n~~~g~~~v~aVk~p~~g~~r------------ 106 (334)
+..++.-.-+...+.-..+++.+.+...|+|| |-++|..+..+.....-+ .|=+|..|+.+
T Consensus 68 ~~av~iGPGlg~~~~~~~~~~~~~~~~~p~Vl-----DADaL~~l~~~~~~~~~~--~IlTPH~gE~~rL~~~~~~~~~~ 140 (242)
T PF01256_consen 68 ADAVVIGPGLGRDEETEELLEELLESDKPLVL-----DADALNLLAENPKKRNAP--VILTPHPGEFARLLGKSVEIQED 140 (242)
T ss_dssp -SEEEE-TT-SSSHHHHHHHHHHHHHCSTEEE-----ECHHHHCHHHCCCCSSSC--EEEE-BHHHHHHHHTTTCHHCCS
T ss_pred CCEEEeecCCCCchhhHHHHHHHHhhcceEEE-----ehHHHHHHHhccccCCCC--EEECCCHHHHHHHhCCcccchhh
Confidence 44455554555555666678888888999776 888999888764221122 23346544432
Q ss_pred -hhHHHHHHhHcCcEEe
Q 019867 107 -KAIMEDLAILTGGQVL 122 (334)
Q Consensus 107 -~~~Ledia~~tG~~ii 122 (334)
.+..++++..+|+.++
T Consensus 141 ~~~~a~~~a~~~~~~vv 157 (242)
T PF01256_consen 141 RIEAAREFAKEYGAVVV 157 (242)
T ss_dssp HHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHhhcCcEEE
Confidence 2334555555666555
No 150
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=20.01 E-value=1.1e+02 Score=26.78 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=31.5
Q ss_pred eEEeecCeEEEeeccCCCChH-----HHHHHhhHHHH-hCCcEEEEecccc
Q 019867 32 TIFVLDGALVLIYDTKISNSN-----VIRQASLPCMM-QGQSLLVVAEDVE 76 (334)
Q Consensus 32 ~~~~l~~p~Ill~d~~i~~~~-----~i~~~le~i~~-~~~~llIia~~i~ 76 (334)
...-+.+|.++++|.+.+..+ .+..++....+ .|..+++++-+.+
T Consensus 142 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 142 GRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 345677999999999876653 45666666655 3777888876653
Done!