RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 019868
(334 letters)
>gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase;
Provisional.
Length = 380
Score = 544 bits (1403), Expect = 0.0
Identities = 231/282 (81%), Positives = 255/282 (90%)
Query: 52 QQVNEGQRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
++E ++ +GDSFIR H+ +L PYQPILPFEVLS QLGRKPEDIVK+DANENPYGPPP
Sbjct: 9 TAMSEVKQSTSGDSFIRKHILQLAPYQPILPFEVLSAQLGRKPEDIVKLDANENPYGPPP 68
Query: 112 EVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGD 171
EV EALG +KFPY+YPDPESRRLRAALA+DSGLES++ILVGCGADELIDL+MRCVLDPGD
Sbjct: 69 EVLEALGNMKFPYVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCVLDPGD 128
Query: 172 KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPD 231
KI+DCPPTF MY FDAAVNGA V+KVPR DFSL+V I +AVE KPK +FLTSPNNPD
Sbjct: 129 KIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPD 188
Query: 232 GSIINDEDLLKILEMPILVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLR 291
GSII+D+DLLKILE+PILVVLDEAY EFS ESRM+WVKK+DNLIVLRTFSKRAGLAGLR
Sbjct: 189 GSIISDDDLLKILELPILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLR 248
Query: 292 VGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAALQNPIYLE 333
VGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAAL NP YLE
Sbjct: 249 VGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAALSNPKYLE 290
>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase. Alternate
names: histidinol-phosphate transaminase; imidazole
acetol-phosphate transaminase Histidinol-phosphate
aminotransferase is a pyridoxal-phosphate dependent
enzyme [Amino acid biosynthesis, Histidine family].
Length = 346
Score = 276 bits (708), Expect = 2e-91
Identities = 115/270 (42%), Positives = 174/270 (64%), Gaps = 14/270 (5%)
Query: 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFP-YIY 126
R ++ L PYQP ++++K+++NENP+GPPP+ +EAL + Y
Sbjct: 1 RPDIKNLSPYQPARELGG---------KEVIKLNSNENPFGPPPKAKEALRAEADKLHRY 51
Query: 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD 186
PDP+ L+ ALA G++ + IL+G G+DE+I+L++R L+PGD ++ PPT++MYE
Sbjct: 52 PDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEIS 111
Query: 187 AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM 246
A ++GA VVKVP D L++E I A++ +KPK +FL SPNNP G++++ D+ +LE
Sbjct: 112 AKIHGAEVVKVPLDEDGQLDLEDILVAID-DKPKLVFLCSPNNPTGNLLSRSDIEAVLER 170
Query: 247 PI---LVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIE 303
LVV+DEAY EFSG S + + ++ NLIVLRT SK GLAGLR+GY II+
Sbjct: 171 TPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIID 230
Query: 304 YLWRAKQPYNVSVAAEVAACAALQNPIYLE 333
L + + P+N+S A+ AA AAL++ ++E
Sbjct: 231 ALNKVRAPFNLSRLAQAAAIAALRDDDFIE 260
>gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase;
Validated.
Length = 361
Score = 260 bits (666), Expect = 5e-85
Identities = 119/270 (44%), Positives = 179/270 (66%), Gaps = 5/270 (1%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI 125
IR+ ++++KPY P E ++ + G PE I+K+ +NENP GP P+ EA+ + L +
Sbjct: 6 IRAEVKEIKPYVPGKSKEEIAREYGIDPESIIKLGSNENPLGPSPKAVEAIEKELSKIHR 65
Query: 126 YPDPESRRLRAALAKDSGLESDHILV-GCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE 184
YP+P++ LR AL+K +G+ ++I+V G G DE+ID +MR +DPGD+++ PTF+ YE
Sbjct: 66 YPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYE 125
Query: 185 FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKIL 244
A +GA V R+ DFSL+V+ + +A+ EK K IFL +PNNP G++I +ED+ KIL
Sbjct: 126 ISAKAHGAKPVYAKREEDFSLDVDSVLNAIT-EKTKVIFLCTPNNPTGNLIPEEDIRKIL 184
Query: 245 E-MPILVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIE 303
E LV +DEAY EF+ + ++DNLI+ RTFSK GLAGLR+GYG P +I+
Sbjct: 185 ESTDALVFVDEAYVEFAEYDYT-PLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLID 243
Query: 304 YLWRAKQPYNVSVAAEVAACAALQNPIYLE 333
Y RAK P++++ ++ AA AAL + Y+E
Sbjct: 244 YYMRAKTPFSLTRLSQAAAIAALSDKEYIE 273
>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and
cobyric acid decarboxylase [Amino acid transport and
metabolism].
Length = 356
Score = 259 bits (665), Expect = 6e-85
Identities = 126/272 (46%), Positives = 171/272 (62%), Gaps = 16/272 (5%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI 125
+R +R L PY P I+K+ +NENPYGPPP+V EA+ L
Sbjct: 2 LRPLVRDLPPYVPG--------ARQYGLPGIIKLSSNENPYGPPPKVIEAIRAALDKLNR 53
Query: 126 YPDPESRRLRAALA-KDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE 184
YPDP+ R LRAALA ++ +++LVG G+DELI+L++R ++PGD ++ PTF+MYE
Sbjct: 54 YPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYE 113
Query: 185 FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKIL 244
A + GA VVKVP K +F L+++ I A+ R+K K +FL +PNNP G+++ E+L +L
Sbjct: 114 IAAQLAGAEVVKVPLK-EFRLDLDAILAAI-RDKTKLVFLCNPNNPTGTLLPREELRALL 171
Query: 245 EMP---ILVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSI 301
E LVV+DEAY EFS ES +E +K NLIVLRTFSK GLAGLRVGY +
Sbjct: 172 EALPEGGLVVIDEAYIEFSP-ESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPEL 230
Query: 302 IEYLWRAKQPYNVSVAAEVAACAALQNPIYLE 333
I L + + P+NVS A AA AAL++ YLE
Sbjct: 231 IAALNKVRPPFNVSSPALAAAIAALRDADYLE 262
>gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase;
Validated.
Length = 367
Score = 248 bits (635), Expect = 4e-80
Identities = 106/273 (38%), Positives = 160/273 (58%), Gaps = 11/273 (4%)
Query: 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREAL-GQLKFPYIY 126
+ + PY P P E L + G DI+K+ +NENP GP P+ EA+ + Y
Sbjct: 7 NPGILDIAPYVPGKPIEELVREYG--IADIIKLASNENPLGPSPKAIEAIRAAADELHRY 64
Query: 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD 186
PD L+AALA+ G++ + I++G G+DE+++L+ R L PGD+++ F +Y
Sbjct: 65 PDGSGFELKAALAEKFGVDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIA 124
Query: 187 AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE- 245
A GA V+VP K D+ +++ + AV + + +F+ +PNNP G+ + E++ + L
Sbjct: 125 AQAVGAKPVEVPAK-DYGHDLDAMLAAVT-PRTRLVFIANPNNPTGTYLPAEEVERFLAG 182
Query: 246 MP--ILVVLDEAYTEF---SGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLS 300
+P +LVVLDEAY E+ E +E V K N++V RTFSK GLAGLRVGYG P
Sbjct: 183 VPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPE 242
Query: 301 IIEYLWRAKQPYNVSVAAEVAACAALQNPIYLE 333
II+ L R +QP+NV+ A AA AAL + ++E
Sbjct: 243 IIDALNRVRQPFNVNSLALAAAVAALDDDAFVE 275
>gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase;
Provisional.
Length = 359
Score = 234 bits (600), Expect = 5e-75
Identities = 114/274 (41%), Positives = 169/274 (61%), Gaps = 11/274 (4%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREAL-GQLKFPYI 125
++ L +L YQP E + + G E IVK+ +NENPYGP P+V+EA+ L +
Sbjct: 3 MKEQLNQLSAYQPGKSIEEVKREYGL--EKIVKLASNENPYGPSPKVKEAIAAHLDELAL 60
Query: 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
YPD + LR +AK G++ + +L G G DE+I +I R +L+PG V PTF+ Y
Sbjct: 61 YPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRH 120
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE 245
+A + GA V +VP K D ++E + A++ E+ K +++ +PNNP G+ +N E+LL LE
Sbjct: 121 NAIIEGAEVREVPLK-DGGHDLEAMLKAID-EQTKIVWICNPNNPTGTYVNHEELLSFLE 178
Query: 246 -MP--ILVVLDEAYTEFSGLE---SRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPL 299
+P +LVVLDEAY E+ E + ++K++NLIVLRTFSK GLA LRVGYG
Sbjct: 179 SVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASE 238
Query: 300 SIIEYLWRAKQPYNVSVAAEVAACAALQNPIYLE 333
+IE L A+ P+N + A+ AA AAL++ +L+
Sbjct: 239 ELIEKLNIARPPFNTTRIAQYAAIAALEDQAFLK 272
>gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase;
Provisional.
Length = 356
Score = 198 bits (506), Expect = 5e-61
Identities = 95/241 (39%), Positives = 140/241 (58%), Gaps = 7/241 (2%)
Query: 94 PEDIVKIDANENPYGPPPEVREALGQ-LKFPYI--YPDPESRRLRAALAKDSGL-ESDHI 149
+VK+DA ENPY P E+R LG+ L + YPDP + L+AAL G+ +
Sbjct: 25 ATGMVKLDAMENPYRLPAELRAELGERLAEVALNRYPDPRAAALKAALRAAMGVPAGADV 84
Query: 150 LVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVEL 209
L+G G+DELI L+ PG ++ P F MY A + G V VP +DF+L++
Sbjct: 85 LLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPA 144
Query: 210 IADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE-MPILVVLDEAYTEFSGLESRMEW 268
+ A+ +P +FL PNNP G++ +D D+ +I+E P LVV+DEAY F+G +S +
Sbjct: 145 MLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAG-DSWLPR 203
Query: 269 VKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAALQN 328
+ + NL+V+RT SK GLAGLR+GY A + I L + + PYNV+V + A AL++
Sbjct: 204 LARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRPPYNVNVLTQATALFALEH 262
Query: 329 P 329
Sbjct: 263 V 263
>gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase;
Provisional.
Length = 337
Score = 192 bits (489), Expect = 8e-59
Identities = 103/260 (39%), Positives = 154/260 (59%), Gaps = 19/260 (7%)
Query: 79 PILPFEVLSIQLGRKPEDIVKI--DANENPYGPPPEVREALGQL-------KFPYIYPDP 129
I V S + R E +I D NENP+ P E++E + + ++P+I DP
Sbjct: 1 MIRE-LVKSFKPYRVVEGNYRIWLDKNENPFDLPEELKEEIFEELKRVPFNRYPHITSDP 59
Query: 130 ESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV 189
LR A+A+ GL++++I VG G+DELI +++ L G IV PPTF MY F A +
Sbjct: 60 ----LREAIAEFYGLDAENIAVGNGSDELISYLVK--LFEGKHIVITPPTFGMYSFYAKL 113
Query: 190 NGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMPIL 249
NG V+ VP K DF+++ E IA+ + + +F+ SPNNP G++ +E++LK+LE
Sbjct: 114 NGIPVIDVPLKEDFTIDGERIAE--KAKNASAVFICSPNNPTGNLQPEEEILKVLETGKP 171
Query: 250 VVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAK 309
VVLDEAY EFSG +S + + ++ NLI+LRTFSK GLAG+R GY II+ L+R K
Sbjct: 172 VVLDEAYAEFSG-KSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIK 230
Query: 310 QPYNVSVAAEVAACAALQNP 329
P+++++ AL +
Sbjct: 231 PPFSLNILTMKIVRLALDHY 250
>gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase;
Provisional.
Length = 351
Score = 189 bits (481), Expect = 1e-57
Identities = 94/233 (40%), Positives = 143/233 (61%), Gaps = 5/233 (2%)
Query: 99 KIDANENPYGPPPEVREALGQLKFPY---IYPDPESRRLRAALAKDSGLESDHILVGCGA 155
K+DANE P+ P EV + + ++ IYPDP + +LR LA+ + +I VG G+
Sbjct: 26 KMDANETPFELPEEVIKNIQEIVKSSQVNIYPDPTAEKLREELARYCSVVPTNIFVGNGS 85
Query: 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVE 215
DE+I LIM ++ GD ++ P+F MY + + GA + V K D++ +V +E
Sbjct: 86 DEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIE 145
Query: 216 REKPKCIFLTSPNNPDGSIINDEDLLKILEMPI-LVVLDEAYTEFSGLESRMEWVKKHDN 274
+ +PK +FL +PNNP GS+I ED++KI+E +VV+DEAY EF G + ++ + + +N
Sbjct: 146 KYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYG-NTIVDVINEFEN 204
Query: 275 LIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAALQ 327
LIVLRT SK GLAGLRVGY +I++YL K PYN++ ++V A L+
Sbjct: 205 LIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSPYNINSLSQVIALKVLR 257
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 180 bits (459), Expect = 4e-54
Identities = 82/253 (32%), Positives = 131/253 (51%), Gaps = 21/253 (8%)
Query: 98 VKIDANENPYGPPPEVREALGQL----KFPYIYPDPESRRLRAALAK------DSGLESD 147
+ + E + PPPEV EAL YPDP LR A+A+ + +
Sbjct: 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPE 60
Query: 148 HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNV 207
I+V GA E + L++R +L+PGD+++ PT+ YE A + GA VV VP + +
Sbjct: 61 EIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLL 120
Query: 208 ELIA-DAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLDEAYTEFSG- 261
+L +A + K K ++L +PNNP G+++++E+L ++ E+ IL++ DEAY E
Sbjct: 121 DLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYD 180
Query: 262 --LESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPY---NVSV 316
+ + ++ +IVLR+FSK GL GLR+GY P + + PY S
Sbjct: 181 GEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPST 240
Query: 317 AAEVAACAALQNP 329
++ AA AAL +
Sbjct: 241 LSQAAAAAALDDG 253
>gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase;
Provisional.
Length = 371
Score = 178 bits (452), Expect = 6e-53
Identities = 103/277 (37%), Positives = 158/277 (57%), Gaps = 12/277 (4%)
Query: 65 SFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQL-KFP 123
S R+ +R L PY L E + + G I K+ +NENP GP P VR A + +
Sbjct: 8 SLARAEVRPLPPYNAGLTIEEVRARYG--VPRIAKLGSNENPLGPSPAVRRAFADIAELL 65
Query: 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMY 183
+YPDP+ R LR A+A +G+ +D I++G G+++LI +I R VL PGD++V P+F ++
Sbjct: 66 RLYPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLH 125
Query: 184 EFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI 243
E + GA V +V D +++ + AV P+ + ++P+NP GS + + L ++
Sbjct: 126 EDYPTMMGARVERVTVTPDLGFDLDALCAAV-ARAPRMLMFSNPSNPVGSWLTADQLARV 184
Query: 244 LEM---PILVVLDEAYTEFS---GLESRMEWVKKHD-NLIVLRTFSKRAGLAGLRVGYG- 295
L+ L+V+DEAY E++ S + +K IVLRTFSK GLAGLRVGYG
Sbjct: 185 LDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGL 244
Query: 296 AFPLSIIEYLWRAKQPYNVSVAAEVAACAALQNPIYL 332
++ L R + P+NV+ AA+ AA AAL + +L
Sbjct: 245 VSDPELVGLLDRVRTPFNVNGAAQAAALAALDDEEHL 281
>gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional.
Length = 352
Score = 177 bits (450), Expect = 8e-53
Identities = 93/269 (34%), Positives = 148/269 (55%), Gaps = 19/269 (7%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI 125
+R L + Y P G+ +K+ +NE P+GP P VR A+ +
Sbjct: 5 LRPDLAGIPAYVP-----------GKTVPGAIKLSSNETPFGPLPSVRAAIARAAAGVNR 53
Query: 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
YPD + LRAALA+ G+ +H+ VGCG+ L +++ PGD+++ +F Y
Sbjct: 54 YPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPI 113
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE 245
V GA V+VP D + +++ +A A+ ++ + IF+ +PNNP G+++ +L + L+
Sbjct: 114 LVQVAGATPVQVPLTPDHTHDLDAMAAAIT-DRTRLIFVCNPNNPTGTVVTPAELARFLD 172
Query: 246 -MP--ILVVLDEAYTEFSGLESR---MEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPL 299
+P +LVVLDEAY E+ + +E V+ H N++VLRTFSK GLAGLRVGY
Sbjct: 173 AVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHP 232
Query: 300 SIIEYLWRAKQPYNVSVAAEVAACAALQN 328
+I L + P++V+ A+ AA A+L
Sbjct: 233 EVIAALRKVAVPFSVNSLAQAAAIASLAA 261
>gnl|CDD|235115 PRK03317, PRK03317, histidinol-phosphate aminotransferase;
Provisional.
Length = 368
Score = 162 bits (413), Expect = 3e-47
Identities = 92/279 (32%), Positives = 144/279 (51%), Gaps = 36/279 (12%)
Query: 67 IRSHLRKLKPY-QPILPFEVLSIQLGRKPEDI-VKIDANENPYGPPPE--------VREA 116
+R LR PY P QL D+ V+++ NENPY P P V EA
Sbjct: 10 LRDDLRGKSPYGAP---------QL-----DVPVRLNTNENPYPPSPALVADIAEAVAEA 55
Query: 117 LGQLKFPYIYPDPESRRLRAALA----KDSG--LESDHILVGCGADELIDLIMRCVLDPG 170
L YPD ++ LRA LA +G L +++ G++E++ +++ PG
Sbjct: 56 AAGLNR---YPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPG 112
Query: 171 DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNP 230
+ P+++M+ A V+ PR +DF+L+V+ A+ +P +FLTSPNNP
Sbjct: 113 RTALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNP 172
Query: 231 DGSIINDEDLLKILE-MPILVVLDEAYTEF--SGLESRMEWVKKHDNLIVLRTFSKRAGL 287
G+ + +D+ IL+ P +VV+DEAY EF SG S + + ++ L+V RT SK
Sbjct: 173 TGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAF 232
Query: 288 AGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAAL 326
AG R+GY A ++++ L + PY++S + AA AAL
Sbjct: 233 AGGRLGYLAAAPAVVDALRLVRLPYHLSAVTQAAARAAL 271
>gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase;
Provisional.
Length = 351
Score = 159 bits (405), Expect = 4e-46
Identities = 90/266 (33%), Positives = 141/266 (53%), Gaps = 21/266 (7%)
Query: 64 DSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFP 123
R ++R L PYQ + +LG + V ++ANE P + L Q
Sbjct: 6 TDLARENVRALTPYQS-------ARRLGGNGD--VWLNANEYPTAVEFQ----LTQQTLN 52
Query: 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTFTM 182
YP+ + + + A +G++ + +LV GADE I+L++R +PG D I+ CPPT+ M
Sbjct: 53 R-YPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGM 111
Query: 183 YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLK 242
Y A G + VP ++ L++ IAD ++ K +++ SPNNP G++IN +DL
Sbjct: 112 YSVSAETIGVEIRTVPTLDNWQLDLPAIADNLD--GVKVVYVCSPNNPTGNLINPQDLRT 169
Query: 243 ILEMP---ILVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPL 299
+LE+ +VV DEAY EF S W+ ++ +L++LRT SK LAGLR G+
Sbjct: 170 LLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANE 229
Query: 300 SIIEYLWRAKQPYNVSV-AAEVAACA 324
+I L + PY +S A++AA A
Sbjct: 230 EVINLLLKVIAPYPLSTPVADIAAQA 255
>gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase;
Provisional.
Length = 357
Score = 156 bits (395), Expect = 1e-44
Identities = 91/264 (34%), Positives = 139/264 (52%), Gaps = 8/264 (3%)
Query: 76 PYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREAL-GQLKFPYIYPDPESRRL 134
Y+ E ++ +LG P+D+VK+ +NENP+GP P EA+ + + YP L
Sbjct: 11 AYRAGRGIEEVARELGLDPDDLVKLSSNENPHGPSPAAVEAIREAAERVHSYPKASHADL 70
Query: 135 RAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAV 194
AALA + + + + G D +D + R +LDPGD ++ P F Y A + V
Sbjct: 71 TAALADRWDVSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHGEV 130
Query: 195 VKVP--RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMP---IL 249
+ P + DF + + DA + E+ ++LTSP+NP GS I +++ + E L
Sbjct: 131 REYPVSKADDFEQTADTVLDAYDGER--IVYLTSPHNPTGSEIPLDEVEALAERTDEETL 188
Query: 250 VVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAK 309
VV+DEAY EF+ S + V++ D++ VLRTFSK GLAGLR+GY P + R
Sbjct: 189 VVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVN 248
Query: 310 QPYNVSVAAEVAACAALQNPIYLE 333
P+ S A A AAL + ++E
Sbjct: 249 TPFAASELACRAGLAALDDDEHVE 272
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 153 bits (389), Expect = 1e-43
Identities = 75/262 (28%), Positives = 122/262 (46%), Gaps = 26/262 (9%)
Query: 95 EDIVKIDANENPYG--PPPEVREALGQL-------KFPYIYPDPESRRLRAALAKDSGLE 145
D + + +NE P V +A + PE R A S +
Sbjct: 1 TDKINLGSNEYLGDSGTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRSPVL 60
Query: 146 ----SDHILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK 200
++ G GA I+ ++ + L+PGD I+ PT+ Y + G VV+ P
Sbjct: 61 KLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRYPLY 120
Query: 201 S--DFSLNVELIADAVER--EKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVL 252
S DF L+ + + A++ E K + TSP+NP G++ E+L K+L++ IL+++
Sbjct: 121 SSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLV 180
Query: 253 DEAYTEF----SGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRA 308
DEAY F + + + NL+V+ +FSK GLAG RVGY ++I L +
Sbjct: 181 DEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKL 240
Query: 309 KQPYNVSVAAEVAACAALQNPI 330
+P+ S + AA AAL +P+
Sbjct: 241 ARPFYSSTHLQAAAAAALSDPL 262
>gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase;
Provisional.
Length = 374
Score = 152 bits (387), Expect = 2e-43
Identities = 95/284 (33%), Positives = 145/284 (51%), Gaps = 27/284 (9%)
Query: 65 SFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPY 124
F+RS L +LK Y P P + + ++D NE PY PP++++ L L
Sbjct: 3 PFLRSDLAQLKAYHPH-PSGDADDAVIQLD----RLDTNEFPYDLPPDLKQKLAWLYQQG 57
Query: 125 I----YPDPESRRLRAALAK--------DSGLESDHILVGCGADELID--LIMRCVLDPG 170
I YPD L+ A+A+ S + +I VG G+DELI LI C+ G
Sbjct: 58 IESNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEG 117
Query: 171 DKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLNVELIADAVEREKP---KCIFLTS 226
+V PTF+MY A G VV+V R F +++ A+E+ + + +F+
Sbjct: 118 SILV-AEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVH 176
Query: 227 PNNPDGSIINDEDL--LKILEMPILVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKR 284
PN+P G+ + +L L+ L ILVV+DEAY EFS + + + +H N ++LRTFSK
Sbjct: 177 PNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQ-TTLVGELAQHPNWVILRTFSKA 235
Query: 285 AGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAALQN 328
LA RVGY +I L + + PYN+ +++AA AL++
Sbjct: 236 FRLAAHRVGYAIGHPELIAVLEKVRLPYNLPSFSQLAAQLALEH 279
>gnl|CDD|235440 PRK05387, PRK05387, histidinol-phosphate aminotransferase;
Provisional.
Length = 353
Score = 151 bits (384), Expect = 6e-43
Identities = 88/276 (31%), Positives = 143/276 (51%), Gaps = 34/276 (12%)
Query: 71 LRKLKPYQPILPFEVLSIQLGRKPED--IVKIDANENPYGPPPEVREAL-----GQLKFP 123
+R+L+PY P G +P+ ++K++ NENPY P P+V EA+ L+
Sbjct: 9 VRQLEPYVP-----------GEQPKLAKLIKLNTNENPYPPSPKVLEAIRAALGDDLR-- 55
Query: 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMY 183
+YPDP + LR A+A GL+ + + VG G+DE++ + ++ T++ Y
Sbjct: 56 -LYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFY 114
Query: 184 EFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKC-IFLTSPNNPDGSIINDEDLLK 242
A + G ++P DFS++VE + +P I +PN P G + ++ +
Sbjct: 115 PVYAGLYGIPYEEIPLDDDFSIDVE------DYLRPNGGIIFPNPNAPTGIALPLAEIER 168
Query: 243 ILEMPI--LVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLS 300
IL +VV+DEAY +F G ES + + ++ NL+V++TFSK LAGLRVG+
Sbjct: 169 ILAANPDSVVVIDEAYVDF-GGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPE 227
Query: 301 IIEYLWRAK---QPYNVSVAAEVAACAALQNPIYLE 333
+IE L R K Y + A+ A AA+++ Y E
Sbjct: 228 LIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFE 263
>gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase;
Validated.
Length = 366
Score = 149 bits (377), Expect = 4e-42
Identities = 93/283 (32%), Positives = 145/283 (51%), Gaps = 29/283 (10%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDI---------VKIDANENPYGPPPEVREAL 117
++ L L+PY+P G+ PE + VK+ +NENP+G P V + L
Sbjct: 3 VKDQLSSLQPYKP-----------GKSPEQMKEVYGDHSFVKLASNENPFGCSPRVLDEL 51
Query: 118 GQLKFPY-IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDC 176
+ + +YPD + LR +A ++ + +L G G DE+I +I R VL GD IV
Sbjct: 52 QKSWLDHALYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTA 111
Query: 177 PPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIIN 236
TF Y A + G V +V + +++ I+ V+ K +++ +PNNP G+ +N
Sbjct: 112 GATFPQYRHHAIIEGCEVKEVALNNGV-YDLDEISSVVD-NDTKIVWICNPNNPTGTYVN 169
Query: 237 DEDLLKILE---MPILVVLDEAYTEF---SGLESRMEWVKKHDNLIVLRTFSKRAGLAGL 290
D L + +E L+V+DEAY E+ + ++KH N++VLRTFSK GLA
Sbjct: 170 DRKLTQFIEGISENTLIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASF 229
Query: 291 RVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAALQNPIYLE 333
RVGY +IE L + P+NVS A+ AA A + ++E
Sbjct: 230 RVGYAVGHEELIEKLNVVRLPFNVSSLAQKAATIAFGDDEFIE 272
>gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase;
Provisional.
Length = 354
Score = 143 bits (363), Expect = 5e-40
Identities = 86/262 (32%), Positives = 133/262 (50%), Gaps = 20/262 (7%)
Query: 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYP 127
R L L PYQ + ++G + + + I+ANE+P+ E + L +L YP
Sbjct: 13 RPELLALTPYQS-------ARRIGGRGD--IWINANESPFNN--EYKLDLARLNR---YP 58
Query: 128 DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTFTMYEFD 186
+ + L A + +G+ + IL GADE I+L++R +PG D I PT+ MY
Sbjct: 59 ECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYAIS 118
Query: 187 AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM 246
A V +P +D+ L ++ I + K +F+ +PNNP G++I+ D+ +++EM
Sbjct: 119 AETFNVGVKALPLTADYQLPLDYIEQL---DGAKLVFICNPNNPTGTVIDRADIEQLIEM 175
Query: 247 --PILVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEY 304
+VV+DEAY EF S + + + NL+VLRT SK LAG R G+ +IE
Sbjct: 176 TPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIEI 235
Query: 305 LWRAKQPYNVSVAAEVAACAAL 326
L R PY V + A AL
Sbjct: 236 LMRVIAPYPVPLPVSEIATQAL 257
>gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase.
This family contains pyridoxal phosphate-binding class
II aminotransferases (see pfam00222) closely related to,
yet distinct from, histidinol-phosphate aminotransferase
(HisC). It is found in cobalamin biosynthesis operons in
Salmonella typhimurium and Bacillus halodurans (each of
which also has HisC) and has been shown to have
L-threonine-O-3-phosphate decarboxylase activity in
Salmonella. Although the gene symbol cobD was assigned
in Salmonella, cobD in other contexts refers to a
different cobalamin biosynthesis enzyme, modeled by
pfam03186 and called cbiB in Salmonella [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 330
Score = 140 bits (355), Expect = 4e-39
Identities = 80/245 (32%), Positives = 119/245 (48%), Gaps = 23/245 (9%)
Query: 89 QLGRKPEDIVKIDANENPYGPP-PEVR-EALGQLKFPYIYPDPESRRLRAALAKDSGLES 146
+ G PED + + NP GPP P + A + YPDPE LRAA A GL +
Sbjct: 11 RYGIPPEDWLDLSTGINPLGPPVPPIPLSAWAR------YPDPEYDELRAAAAAYYGLPA 64
Query: 147 DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLN 206
+L GA E I L+ R +L PG +V PT++ Y G VV++P +
Sbjct: 65 ASVLPVNGAQEAIYLLPR-LLAPGRVLV-LAPTYSEYARAWRAAGHEVVELP-------D 115
Query: 207 VELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE----MPILVVLDEAYTEFSGL 262
++ + A+E + + +PNNP G +I E LL + +V+DEA+ +F+
Sbjct: 116 LDRLPAALEEAD--LLVVCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD 173
Query: 263 ESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAA 322
S + L+VLR+ +K GLAGLR+G+ ++I L A P+ V+ A A
Sbjct: 174 ASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALIARLREALGPWTVNGPALAAG 233
Query: 323 CAALQ 327
AAL
Sbjct: 234 RAALA 238
>gnl|CDD|181255 PRK08153, PRK08153, histidinol-phosphate aminotransferase;
Provisional.
Length = 369
Score = 140 bits (356), Expect = 6e-39
Identities = 95/264 (35%), Positives = 140/264 (53%), Gaps = 22/264 (8%)
Query: 82 PF---EVLSIQLGRKPEDIVKIDANENPYGPPPEV----REALGQLKFPYIYPDPESRRL 134
PF E L Q GR +I ANE+ +GP P V REA ++ + Y DPE+ L
Sbjct: 18 PFVGPETLERQRGRPFR--ARIGANESGFGPSPSVIAAMREAAAEI---WKYGDPENHDL 72
Query: 135 RAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCP---PTFTMYEFDAAVNG 191
R ALA G+ ++I+VG G D L+ LI+R ++PGD +V PTF + A G
Sbjct: 73 RHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFN---YHVAGFG 129
Query: 192 AAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE-MP--I 248
+V VP + D +++ + DA RE ++L +P+NP GS D++ +E +P
Sbjct: 130 GRLVTVPYRDDRE-DLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETT 188
Query: 249 LVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRA 308
L+VLDEAY E + + N+I +RTFSK GLAG RVGY I+ +
Sbjct: 189 LLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKV 248
Query: 309 KQPYNVSVAAEVAACAALQNPIYL 332
+ + ++ A+ AA AAL++ YL
Sbjct: 249 RNHFGMNRIAQAAALAALKDQAYL 272
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 138 bits (351), Expect = 6e-38
Identities = 79/273 (28%), Positives = 121/273 (44%), Gaps = 37/273 (13%)
Query: 92 RKPEDIVKIDANENPYGPPPEVREALGQL----KFPYIYPDPESRRLRAALA----KDSG 143
+ ED++ + E + P + EA + Y P LR A+A + G
Sbjct: 25 KGKEDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHY-TPSAGIPELREAIAEKYKRRYG 83
Query: 144 LE---SDHILVGCGADELIDLIMRCVLDPGDKIVDCP-PTFTMYEFDAAVNGAAVVKVPR 199
L+ + I+V GA E + L +L+PGD+++ P P + YE + G V VP
Sbjct: 84 LDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVL-IPDPGYPSYEAAVKLAGGKPVPVPL 142
Query: 200 K---SDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVL 252
+ F ++E + A+ K K I L SPNNP G++ + E+L I+E+ I+++
Sbjct: 143 DEEENGFKPDLEDLEAAI-TPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIIS 201
Query: 253 DEAYTEF--------SGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLS-IIE 303
DE Y E S LE D I + +FSK G+ G R+G+ P +I
Sbjct: 202 DEIYEELVYDGAEHPSILELAGAR----DRTITINSFSKTYGMTGWRIGWVVGPPEELIA 257
Query: 304 YLWRAKQ--PYNVSVAAEVAACAALQNPIYLEV 334
L + K A+ AA AAL P EV
Sbjct: 258 ALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEV 290
>gnl|CDD|235311 PRK04781, PRK04781, histidinol-phosphate aminotransferase;
Provisional.
Length = 364
Score = 137 bits (347), Expect = 1e-37
Identities = 88/239 (36%), Positives = 123/239 (51%), Gaps = 13/239 (5%)
Query: 98 VKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADE 157
V ++ANE+ + P + + + YPDP+ LR+ALA G + +L+G G+DE
Sbjct: 34 VWLNANESAWANPADPDASTRR------YPDPQPPGLRSALAALYGCAPEQLLIGRGSDE 87
Query: 158 LIDLIMRCVLDPG-DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD---FSLNVELIADA 213
IDL++R + PG D ++ PP F MY A + A +V+VP F +V I A
Sbjct: 88 AIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAA 147
Query: 214 VEREKPKCIFLTSPNNPDGSII---NDEDLLKILEMPILVVLDEAYTEFSGLESRMEWVK 270
K +FL SP+NP GS I E L+ L+ LVV+DEAY EFS + S + +
Sbjct: 148 ALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLA 207
Query: 271 KHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAALQNP 329
++DNL VLRT SK LA R+G +I L R + PY V A AL P
Sbjct: 208 RYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQAPYPVPTPCAALAEQALSAP 266
>gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional.
Length = 354
Score = 133 bits (337), Expect = 3e-36
Identities = 75/259 (28%), Positives = 141/259 (54%), Gaps = 21/259 (8%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPEVREA----LGQLKFPYIYPDPESRRLRAALAKDSGL 144
+ G I+ AN NP G P +++A L +L YPDP+ LR +A L
Sbjct: 13 EKGLTKNMILDFSANINPLGVPESLKQAITENLDKLVE---YPDPDYLELRKRIASFEQL 69
Query: 145 ESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVV--KVPRKSD 202
+ +++++G GA ELI I++ V P K++ PTF YE A + ++ +++
Sbjct: 70 DLENVILGNGATELIFNIVK-VTKP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETN 127
Query: 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKIL----EMPILVVLDEAYTE 258
F+ N ++ + +E+ +FL +PNNP G +I+ E++ KIL + I +++DEA+ +
Sbjct: 128 FAANEIVLEE--IKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMD 185
Query: 259 F---SGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYG-AFPLSIIEYLWRAKQPYNV 314
F + S + +++ NLI++R F+K + GLR+GYG ++ E L + ++P+++
Sbjct: 186 FLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPWSI 245
Query: 315 SVAAEVAACAALQNPIYLE 333
+ A++A L + Y++
Sbjct: 246 NTFADLAGQTLLDDKEYIK 264
>gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional.
Length = 370
Score = 128 bits (324), Expect = 3e-34
Identities = 79/247 (31%), Positives = 121/247 (48%), Gaps = 21/247 (8%)
Query: 94 PEDIVKIDANENPYGPPPEVREALGQL-----KFPYIYPDPESRRLRAALAKDSGLESDH 148
E V ++ANE P GP P R+A + ++ D LR A GL +DH
Sbjct: 42 AEGAVFLNANECPLGPSPAARDAAARSAALSGRYDLELED----DLRTLFAAQEGLPADH 97
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208
++ G+ E ++ + P +V PT+ A GA V KVP ++D + +V+
Sbjct: 98 VMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVK 157
Query: 209 --LIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE-MP---ILVVLDEAYTEFSGL 262
L AD I++ +PNNP G++ D+ +L P +L+V DEAY FS
Sbjct: 158 AMLAADP----NAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLV-DEAYIHFSDA 212
Query: 263 ESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAA 322
S ++ V + +LIVLRTFSK G+AG+R+G A ++ L R + V A A
Sbjct: 213 PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARFGHN-PLPVPAAAAG 271
Query: 323 CAALQNP 329
A+L++P
Sbjct: 272 LASLRDP 278
>gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated.
Length = 360
Score = 118 bits (297), Expect = 1e-30
Identities = 80/244 (32%), Positives = 116/244 (47%), Gaps = 14/244 (5%)
Query: 94 PEDIVKIDANENPYGPPPEVREALGQLKFPYI--YPDPESRRLRAALAKDSGLESDHILV 151
P+ I+ A+ NP GPP V A+ + YPDP+ R LR ALA+ L + IL
Sbjct: 21 PDAILDFSASINPLGPPESVIAAIQS-ALSALRHYPDPDYRELRLALAQHHQLPPEWILP 79
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIA 211
G GA EL+ R L + P F Y GA V ++P D +
Sbjct: 80 GNGAAELLTWAGR-ELAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLR 138
Query: 212 DAVER--EKPKC-IFLTSPNNPDGSIINDEDLLKILEMPILVVLDEAYTEF---SGLESR 265
P + L +P+NP G + + E +L +LE LVV+DEA+ +F +S
Sbjct: 139 LQTLPPQLTPNDGLLLNNPHNPTGKLWSREAILPLLEQFALVVVDEAFMDFLPPDAEQSL 198
Query: 266 MEWVKKHDNLIVLRTFSKRAGLAGLRVGYG-AFPLSIIEY-LWRAKQPYNVSVAAEVAAC 323
+ + ++ NLI+LR+ +K L GLR+GY A P + + WR P+ V+ A AA
Sbjct: 199 IPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQWR--DPWPVNGLAAAAAI 256
Query: 324 AALQ 327
AAL
Sbjct: 257 AALA 260
>gnl|CDD|173269 PRK14808, PRK14808, histidinol-phosphate aminotransferase;
Provisional.
Length = 335
Score = 110 bits (276), Expect = 7e-28
Identities = 79/240 (32%), Positives = 124/240 (51%), Gaps = 19/240 (7%)
Query: 96 DIVKIDANENPYGPPPEVREAL------GQLKFPYIYPDPE-SRRLRAALAKDSGLESDH 148
D + NENP+ P ++ + + L+ Y PD E ++ + L D L ++
Sbjct: 20 DRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIYYDSPDEELIEKILSYLDTDF-LSKNN 78
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208
+ VG GADE+I ++M D+ V PPT++ Y A GA ++VP D +
Sbjct: 79 VSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRI--- 131
Query: 209 LIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMPILVVLDEAYTEFSGLESRMEW 268
V + +F+ +PNNP G + E++ +IL+ V LDEAY EF G ES ++
Sbjct: 132 ---PEVNVGEGDVVFIPNPNNPTGHVFEREEIERILKTGAFVALDEAYYEFHG-ESYVDL 187
Query: 269 VKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAALQN 328
+KK++NL V+RTFSK LA R+GY I+ R + P+NVS +++ A AL +
Sbjct: 188 LKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRLPFNVSYVSQMFAKVALDH 247
>gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional.
Length = 380
Score = 97.9 bits (244), Expect = 6e-23
Identities = 76/255 (29%), Positives = 124/255 (48%), Gaps = 30/255 (11%)
Query: 93 KPEDIVKIDANENPYGPPPEVREAL--GQLKFPY-IYPDPES-RRLRAALAKDSGLESDH 148
K ++++ + N N GP EVREA+ + Y YP PE LR + KD GL+ D
Sbjct: 26 KDKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLGLDDDE 85
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS---DFSL 205
L+ GA E + L+MR L PGD V P + + + A+ GA V++VP S ++ L
Sbjct: 86 ALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKL 145
Query: 206 NVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLDEAYTEFSG 261
EL+ + ++ E + I+L P NP GS +E++ + E+ ++ D Y +F+
Sbjct: 146 TPELVKENMD-ENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFA- 203
Query: 262 LESRMEWVKKH--------DNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAK-QPY 312
++H ++ + +FSK G+AGLR+G +IE +
Sbjct: 204 --------REHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVINDL 255
Query: 313 NVSVAAEVAACAALQ 327
+V A+ AA A L+
Sbjct: 256 GTNVIAQEAAIAGLK 270
>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional.
Length = 394
Score = 98.0 bits (245), Expect = 6e-23
Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 40/226 (17%)
Query: 105 NPYGPPPE-VREALGQL-------KFPYI----YPDPESRRLRAALAK------DSGLES 146
NP PPP V+EAL +L Y+ YP+ +R A+A+ + L +
Sbjct: 42 NPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPE-----VREAIAESLNRRFGTPLTA 96
Query: 147 DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP-RKSDFSL 205
DHI++ CGA +++ ++ +L+PGD+++ P F Y F +G +V VP F
Sbjct: 97 DHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQP 156
Query: 206 NVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----------PILVVLDEA 255
+++ + A+ K K + + SPNNP G + ++E L + + PI ++ DE
Sbjct: 157 DLDALEAAIT-PKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEP 215
Query: 256 YTE--FSGLESRMEWVKKH-DNLIVLRTFSKRAGLAGLRVGYGAFP 298
Y E + G E + ++ K+ DN IV+ +FSK L G R+GY A
Sbjct: 216 YREIVYDGAE--VPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVN 259
>gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated.
Length = 387
Score = 94.8 bits (236), Expect = 8e-22
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 10/187 (5%)
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKV-PRKSDFSLNV 207
I+V GA E ID+ R +L+PG +++ P + YE + GA V + R + F L
Sbjct: 92 IIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTA 151
Query: 208 ELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAYTEF---S 260
E + +A+ EK +C+ L P+NP G ++ E+L I ++ I V+ DE Y+E
Sbjct: 152 EALENAIT-EKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQ 210
Query: 261 GLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEV 320
S + + + IV+ SK + G R+G+ P + +++ + Q YNV+ A+ +
Sbjct: 211 PHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVHQ-YNVTCASSI 269
Query: 321 AACAALQ 327
+ AAL+
Sbjct: 270 SQYAALE 276
>gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional.
Length = 356
Score = 90.9 bits (226), Expect = 1e-20
Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 15/253 (5%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPEVREAL-GQLKFPYIYPDPESRRLRAALAKDSGLESD 147
LG P+ ++ AN NP G P ++ A+ L YPD E R L ALA+ + +
Sbjct: 14 VLGISPDQLLDFSANINPLGMPVSLKRAIIDNLDCAERYPDVEYRHLHQALARHHQVPAS 73
Query: 148 HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD--FSL 205
IL G G E I ++ L P ++ P F Y G + + + + L
Sbjct: 74 WILAGNGETESIFAVVS-GLKPRRAMI-VTPGFAEYRRALQQVGCEIRRYSLREADGWQL 131
Query: 206 NVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKIL-----EMPILVVLDEAYTEFS 260
+ I +A+ + C+FL +PNNP G ++ + LL+ + + I ++LDEA+ +F
Sbjct: 132 T-DAILEALTPD-LDCLFLCTPNNPTG-LLPERQLLQAIAERCKSLNIALILDEAFIDFI 188
Query: 261 GLESRM-EWVKKHDNLIVLRTFSKRAGLAGLRVGY-GAFPLSIIEYLWRAKQPYNVSVAA 318
E+ + + +L VLR+ +K + GLR+GY + + + R + P++++ A
Sbjct: 189 PDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQMPWSINAFA 248
Query: 319 EVAACAALQNPIY 331
+A LQ+ Y
Sbjct: 249 ALAGEVILQDRAY 261
>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional.
Length = 393
Score = 90.2 bits (225), Expect = 3e-20
Identities = 75/261 (28%), Positives = 117/261 (44%), Gaps = 45/261 (17%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
PE I + +D + Y P PE+REA+ A L +D+GL+
Sbjct: 46 PEHIKEAAIEALDDGKTKYTPAAGIPELREAI-----------------AAKLKRDNGLD 88
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD- 202
++V GA + + +LDPGD+++ P + Y + G V VP +
Sbjct: 89 YDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEEN 148
Query: 203 -FSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI----LEMPILVVLDEAY- 256
F L VE + A+ K K + L SP+NP G++ + E+L I +E I V+ DE Y
Sbjct: 149 GFKLTVEQLEAAIT-PKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYE 207
Query: 257 ------TEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWR-AK 309
EF+ + S + + D I + FSK + G R+GY A P +I+ + +
Sbjct: 208 KLVYDGAEFTSIAS-LSP-ELRDRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMSKLQS 265
Query: 310 QPY-NVSVAAEVAACAALQNP 329
N + A+ AA AAL P
Sbjct: 266 HSTSNPTSIAQYAAVAALNGP 286
>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated.
Length = 378
Score = 88.6 bits (220), Expect = 8e-20
Identities = 59/198 (29%), Positives = 103/198 (52%), Gaps = 22/198 (11%)
Query: 147 DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP----RKSD 202
D I+V GA + +D+ MR +++PGD+++ P+F Y V A V VP +++
Sbjct: 82 DEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYA--PLVTLAGGVPVPVATTLENE 139
Query: 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLDEAYTE 258
F + I +A K K I L SPNNP G+++N +L +I + ++V+ DE Y E
Sbjct: 140 FKVQPAQI-EAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAE 198
Query: 259 FSGLE-----SRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYN 313
+ E + ++ +++ I++ FSK + G R+G+ A P+ E + + Q Y+
Sbjct: 199 LTYDEAYTSFASIKGMRERT--ILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQ-YS 255
Query: 314 VSVA---AEVAACAALQN 328
+ A A+ AA AL+
Sbjct: 256 MMCAPTMAQFAALEALRA 273
>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino
acid transport and metabolism].
Length = 459
Score = 87.0 bits (216), Expect = 5e-19
Identities = 67/223 (30%), Positives = 106/223 (47%), Gaps = 42/223 (18%)
Query: 106 PYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162
YGP PE+REA+ + L A E + I++ GA + +DL+
Sbjct: 127 QYGPTAGLPELREAI-------------AAYLLARRG--ISCEPEQIVITSGAQQALDLL 171
Query: 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVERE 217
+R +LDPGD ++ PT + A+ GA V+ VP + ++ E + +A+ +
Sbjct: 172 LRLLLDPGDTVLVEDPT-----YPGALQALEALGARVIPVPV-DEDGIDPEALEEALAQW 225
Query: 218 KPKCIFLTSPN--NPDGSIINDEDLLKILEM----PILVVLDEAYTEFSGLESRMEWVKK 271
KPK +++T P NP G ++ E +L + +L++ D+ Y E +K
Sbjct: 226 KPKAVYVT-PTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKA 284
Query: 272 HD---NLIVLRTFSKRAGLA-GLRVGYGAFPLSIIEYLWRAKQ 310
D +I L +FSK LA GLR+GY P +IE L R KQ
Sbjct: 285 LDAPGRVIYLGSFSK--TLAPGLRLGYVVAPPELIEKLLRLKQ 325
>gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional.
Length = 311
Score = 79.0 bits (195), Expect = 1e-16
Identities = 65/214 (30%), Positives = 97/214 (45%), Gaps = 34/214 (15%)
Query: 91 GRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHIL 150
G + E ++ A+ NPY PP + E + K L +K G + I+
Sbjct: 4 GIREEGLIDFSASVNPY-PPEWLDEMFERAK-EISGRYTYYEWLEEEFSKLFG---EPIV 58
Query: 151 VGCGADELIDLIMRCVLDPGDKIVDCP-PTFTMYEFDAAVNGAAVVKVPRKSDFSLNVEL 209
+ G E + LI L D+ V P T+ YE A A ++K +D EL
Sbjct: 59 ITAGITEALYLIGILALR--DRKVIIPRHTYGEYERVARFFAARIIK--GPNDPEKLEEL 114
Query: 210 IADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMPI----LVVLDEAYTEFSGLESR 265
+ E+ +F +PNNPDG N ++L +L+ L++LDEA+ +F
Sbjct: 115 V------ERNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDF------ 162
Query: 266 MEWVKKHD-----NLIVLRTFSKRAGLAGLRVGY 294
VKK + N+I LRTF+K GL G+RVGY
Sbjct: 163 ---VKKPESPEGENIIKLRTFTKSYGLPGIRVGY 193
>gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase;
Validated.
Length = 391
Score = 77.5 bits (191), Expect = 7e-16
Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 37/245 (15%)
Query: 100 IDANENPYGPP---PEVREALGQL---KFPYIYPDPESRRLRAALAKDSGLESDHILVGC 153
IDAN++ Y E+R+A K+ Y PE + ILV
Sbjct: 56 IDANQSHYTGMAGLLELRQAAADFVKEKYNLDY-APE----------------NEILVTI 98
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKV-PRKSDFSLNVELIAD 212
GA E + + +L+PGDK++ P + YE + GA +V++ ++DF L E++
Sbjct: 99 GATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEK 158
Query: 213 AV--EREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAYTEFSGLE--- 263
A+ + +K K + L P NP G + E + + ++ I V+ DE Y+E +
Sbjct: 159 AILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPH 218
Query: 264 -SRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAA 322
S E++ D I++ SK + G R+G P L ++ Q Y V+ A +A
Sbjct: 219 VSIAEYLP--DQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQ-YLVTAATTMAQ 275
Query: 323 CAALQ 327
AA++
Sbjct: 276 FAAVE 280
>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional.
Length = 382
Score = 76.5 bits (189), Expect = 1e-15
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 23/215 (10%)
Query: 134 LRAALAKDSG------LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA 187
LR ALA+ + I V + + L + ++ PGD++V P +
Sbjct: 66 LREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAP 125
Query: 188 AVNGAAVVKVP---RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKIL 244
+ GA VV VP ++L+++ + A+ + + +F+ SPNNP G + +DL IL
Sbjct: 126 KILGARVVCVPLDFGGGGWTLDLDRLLAAIT-PRTRALFINSPNNPTGWTASRDDLRAIL 184
Query: 245 EMP----ILVVLDEAYTEFS-GLESR----MEWVKKHDNLIVLRTFSKRAGLAGLRVGYG 295
+ +V DE Y R ++ + D +I + +FSK + G R+G+
Sbjct: 185 AHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWL 244
Query: 296 AFPLSIIEYLWRAKQPYNVSVAAEV---AACAALQ 327
P ++ + L + + YN S A+ AA AAL
Sbjct: 245 VAPPALGQVLEKLIE-YNTSCVAQFVQRAAVAALD 278
>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional.
Length = 397
Score = 72.2 bits (178), Expect = 4e-14
Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Query: 134 LRAALAK-----DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAA 188
LR A AK +E D IL+ G E I M + DPGD+I+ P + Y A
Sbjct: 71 LREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFAT 130
Query: 189 VNGAAVVKVPRKSD--FSL-NVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE 245
G +V V K + F L + E I + K K I +++P NP G + E+L + E
Sbjct: 131 SAGVKIVPVTTKIEEGFHLPSKEEIEKLIT-PKTKAILISNPGNPTGVVYTKEELEMLAE 189
Query: 246 MP----ILVVLDEAYTEF--SGLE--SRMEWVKKHDNLIVLRTFSKRAGLAGLRVG 293
+ + ++ DE Y EF GL+ S + D +I++ + SKR G R+G
Sbjct: 190 IAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIG 245
>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional.
Length = 384
Score = 71.7 bits (176), Expect = 5e-14
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 17/190 (8%)
Query: 128 DPESRR-LRAALAKDSGL--ESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE 184
D E + +K+ L + + I+ GA + L ++ +LDPGD+++ P FT Y+
Sbjct: 68 DVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYK 127
Query: 185 FDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLK 242
+ G + + + F +NV+ + + K K I L SPNNP G++ + E L +
Sbjct: 128 DQIEMVGGKPIILETYEEDGFQINVKKLEALIT-SKTKAIILNSPNNPTGAVFSKETLEE 186
Query: 243 ILEMPI----LVVLDEAYTEFSGLE-----SRMEWVKKHDNLIVLRTFSKRAGLAGLRVG 293
I ++ I ++ DE Y FS E + + + + I +FSK + G R+G
Sbjct: 187 IAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMP--ERTITFGSFSKDFAMTGWRIG 244
Query: 294 YGAFPLSIIE 303
Y P IIE
Sbjct: 245 YVIAPDYIIE 254
>gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional.
Length = 389
Score = 70.1 bits (172), Expect = 2e-13
Identities = 69/250 (27%), Positives = 109/250 (43%), Gaps = 38/250 (15%)
Query: 107 YGPPPEVREALGQLKFPYIYPDPESRRLRAA-------------LAKDSGLE---SDHIL 150
Y PPPE EAL +PE+ + +A L +D+G+E I+
Sbjct: 39 YPPPPEAIEALNNF-----LANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIV 93
Query: 151 VGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELI 210
V G++ + + DPGD+I+ P + +E + G + VP ++ L E I
Sbjct: 94 VTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAI 153
Query: 211 ADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI----LEMPILVVLDEAYTEFS--GLE- 263
A+ K + I SPNNP G + + L + E I + DEAY F+ G++
Sbjct: 154 EQAIT-PKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKH 212
Query: 264 -SRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ-----PYNVSVA 317
S ++ I L + SK G A R+GY P+ ++E + + + P VS
Sbjct: 213 FSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQDTILICPPVVS-- 270
Query: 318 AEVAACAALQ 327
+ AA ALQ
Sbjct: 271 -QYAALGALQ 279
>gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional.
Length = 391
Score = 69.9 bits (171), Expect = 2e-13
Identities = 59/256 (23%), Positives = 123/256 (48%), Gaps = 20/256 (7%)
Query: 92 RKPEDIVKIDANENPYGPPPEVREALGQL---KFPYIYPDPESRRLRAALAK------DS 142
K E+++ + E + P ++EA + + + P+ LR A+A+
Sbjct: 30 SKMENVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGV 89
Query: 143 GLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-- 200
++ D+++V GA E L +L+ GD+++ P F Y DA + A +++P +
Sbjct: 90 DVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREE 149
Query: 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLDEAY 256
++F + + + + + + + + I + PNNP G+ ++ E I ++ I ++ DE Y
Sbjct: 150 NEFQPDPDELLELITK-RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPY 208
Query: 257 TEFSGLESRMEWVKKH--DNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWR--AKQPY 312
F ++ + K+ DN I+ +FSK + G R+G+ P +I+ + + A
Sbjct: 209 EHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLHAYIIG 268
Query: 313 NVSVAAEVAACAALQN 328
NV+ ++A AL++
Sbjct: 269 NVASFVQIAGIEALRS 284
>gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase. This
family of actinobacterial succinyldiaminopimelate
transaminase enzymes (DapC) are members of the pfam00155
superfamily. Many of these genes appear adjacent to
other genes encoding enzymes of the lysine biosynthesis
via diaminopimelate pathway (GenProp0125).
Length = 357
Score = 68.6 bits (168), Expect = 6e-13
Identities = 66/244 (27%), Positives = 99/244 (40%), Gaps = 45/244 (18%)
Query: 110 PPEVREALGQLK----FPYIYPDPESRRLRAALA-------KDSGLESDHILVGCGADEL 158
PP +R AL +P + PE LR A+ GL+ +L G EL
Sbjct: 36 PPLIRAALAAAADAPGYPQTWGTPE---LREAIVDWLERRRGVPGLDPTAVLPVIGTKEL 92
Query: 159 IDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE 217
+ + + L PGD +V + YE A + GA V ++
Sbjct: 93 VAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAADD-----------PTELDPV 141
Query: 218 KPKCIFLTSPNNPDGSIINDEDLLKIL----EMPILVVLDEAYTEFSGLESRMEWV---- 269
P I+L SP NP G +++ ++L I+ E +V DE Y E G E R +
Sbjct: 142 GPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLEL-GWEGRPVSILDPR 200
Query: 270 ---KKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ------PYNVSVAAEV 320
H L+ + + SKR+ LAG R G+ A +++ L ++ P V AA V
Sbjct: 201 VCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLTVRKHAGLMVPAPV-QAAMV 259
Query: 321 AACA 324
AA
Sbjct: 260 AALG 263
>gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase. This
family of succinyldiaminopimelate transaminases (DapC)
includes the experimentally characterized enzyme from
Bordatella pertussis. The majority of genes in this
family are proximal to genes encoding components of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125).
Length = 393
Score = 65.9 bits (161), Expect = 5e-12
Identities = 74/292 (25%), Positives = 130/292 (44%), Gaps = 44/292 (15%)
Query: 71 LRKLKPYQPILPFEVLSIQL-GRKP---EDIVKIDANENPYGPPPEV-----REALGQL- 120
L +L+PY PFE L+ L G P + + + E P P P RE L L
Sbjct: 4 LSRLQPY----PFEKLAALLAGVTPPASKPPIALSIGE-PKHPTPAFVLEALRENLHGLS 58
Query: 121 KFPYIYPDPESRRLRAALAK-----DSGLESD-HILVGCGADELIDLIMRCVLDPGDK-I 173
+P PE R+ A + +G++ + H+L G E + + V++PG +
Sbjct: 59 TYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPL 118
Query: 174 VDCP-PTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE---KPKCIFLTSPNN 229
V P P + +YE A + GA + ++ + DAV + + +F+ SP N
Sbjct: 119 VVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDF--DAVPESVWRRCQLLFVCSPGN 176
Query: 230 PDGSIINDEDLLKILEMP----ILVVLDEAYTEF--------SGLESRMEWVKKHD--NL 275
P G++++ + L K++E+ ++ DE Y+E +GL + + D
Sbjct: 177 PTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRC 236
Query: 276 IVLRTFSKRAGLAGLRVGYGAFPLSIIE--YLWRAKQPYNVSVAAEVAACAA 325
+V + SKR+ L GLR G+ A I++ +R + + ++A+ AA
Sbjct: 237 LVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAA 288
>gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional.
Length = 413
Score = 64.5 bits (157), Expect = 1e-11
Identities = 55/216 (25%), Positives = 98/216 (45%), Gaps = 24/216 (11%)
Query: 134 LRAALA----KDSGLESD---HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD 186
L +A+A KD+GL D + V G E I + +++PGD+++ P + YE
Sbjct: 96 LNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT 155
Query: 187 AAVNGAAVVKVP-RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI-- 243
++ GA + V R DF++ + + A K + I + +P+NP G + E+L I
Sbjct: 156 LSMAGAKIKTVTLRPPDFAVPEDELKAAFTS-KTRAILINTPHNPTGKMFTREELELIAS 214
Query: 244 --LEMPILVVLDEAYTE--FSGLESRMEWVK-KHDNLIVLRTFSKRAGLAGLRVGYGAFP 298
E +L DE Y + F G M + ++ + + + K L G ++G+ P
Sbjct: 215 LCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP 274
Query: 299 LSIIEYLWRAKQPYN-----VSVAAEVAACAALQNP 329
+ W +Q ++ + + AA AAL+ P
Sbjct: 275 PHLT---WGVRQAHSFLTFATATPMQWAAVAALRAP 307
>gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase. This
clade of the pfam00155 superfamily of aminotransferases
includes several which are adjacent to elements of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125). Every member of this clade is from a
genome which possesses most of the lysine biosynthesis
pathway but lacks any of the known aminotransferases,
succinylases, desuccinylases, acetylases or deacetylases
typical of the acylated versions of this pathway nor do
they have the direct, NADPH-dependent enzyme (ddh).
Although there is no experimental characterization of
any of the sequences in this clade, a direct pathway is
known in plants and Chlamydia and the clade containing
the Chlamydia gene is a neighboring one in the same
pfam00155 superfamily so it seems quite reasonable that
these enzymes catalyze the same transformation.
Length = 383
Score = 61.3 bits (149), Expect = 2e-10
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 13/188 (6%)
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIA 211
G+ E I I ++PGD ++ P + +Y G ++P K + F + + I
Sbjct: 99 GSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIP 158
Query: 212 DAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLDEAYTE--FSGLE-- 263
+ + + K K +F+ PNNP G++ + +++E I+V D AY+E F G +
Sbjct: 159 EDIAK-KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAP 217
Query: 264 SRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSV--AAEVA 321
S +E D I + SK + G R+G +I L + K + V A + A
Sbjct: 218 SFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYA 277
Query: 322 ACAALQNP 329
A AAL P
Sbjct: 278 AIAALNGP 285
>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated.
Length = 387
Score = 61.2 bits (149), Expect = 2e-10
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 24/167 (14%)
Query: 110 PPEVREAL------GQLKFPYIYPDPESRRLRAALAKDS----GLESD---HILVGCGAD 156
PPE+ EA G ++P P P LRAA+A GLE D +LV GA
Sbjct: 39 PPEMLEAAQEAIAGGVNQYP---PGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGAT 95
Query: 157 ELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD---FSLNVELIADA 213
E I + +++PGD+++ P + Y A+ GA V VP D F+L+++ + A
Sbjct: 96 EAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAA 155
Query: 214 VEREKPKCIFLTSPNNPDGSIINDEDLLKILEMPI----LVVLDEAY 256
V + + + + SP+NP G+++ +L I E+ + LV+ DE Y
Sbjct: 156 VT-PRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVY 201
>gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase;
Reviewed.
Length = 364
Score = 60.3 bits (147), Expect = 3e-10
Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 32/207 (15%)
Query: 110 PPEVREALGQLKFPYIYPDPE-SRRLRAALAKD-------SGLESDHILVGCGADELIDL 161
PP ++EAL YP + LR A+ +GL+ +L G+ EL+
Sbjct: 42 PPVIQEALAAAADAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAW 101
Query: 162 IMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPK 220
+ + L PGD +V + YE A + GA VV+ SL + ++P
Sbjct: 102 LPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRAD-----SL------TELGPQRPA 150
Query: 221 CIFLTSPNNPDGSIINDEDLLKIL----EMPILVVLDEAYTEFSGLESRMEWV------- 269
I+L SP+NP G ++ + L K++ E +V DE Y E G ++ +
Sbjct: 151 LIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLEL-GWDAEPVSILDPRVCG 209
Query: 270 KKHDNLIVLRTFSKRAGLAGLRVGYGA 296
H L+ + + SK++ LAG R G+ A
Sbjct: 210 GDHTGLLAVHSLSKQSNLAGYRAGFVA 236
>gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional.
Length = 399
Score = 59.0 bits (143), Expect = 9e-10
Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADA 213
D L+ L M +PGD I+ P +T YE + GA +P K +DF ++ELI +
Sbjct: 104 DGLVHLPM-VYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEE 162
Query: 214 VEREKPKCIFLTSPNNPDGSIINDEDLLKIL-----EMPILVVLDEAYTE--FSGLE--S 264
+ +K K + L P NP ++ ED K + + I+VV D AY E F G + S
Sbjct: 163 I-ADKAKMMILNFPGNPVPAMA-HEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPIS 220
Query: 265 RMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ--PYNVSVAAEVAA 322
+ + + + + SK LAG R+GY I+ L + K Y V + + AA
Sbjct: 221 FLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAA 280
Query: 323 CAALQN 328
CAAL+N
Sbjct: 281 CAALRN 286
>gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with
beta-cystathionase and maltose regulon repressor
activities [Amino acid transport and metabolism].
Length = 388
Score = 58.8 bits (143), Expect = 1e-09
Identities = 61/218 (27%), Positives = 92/218 (42%), Gaps = 39/218 (17%)
Query: 110 PPEVREALGQ----LKFPYIYPDPESRRLRAALAK------DSGLESDHILVGCGADELI 159
PPE+ EAL + F Y Y E L AA+A ++ + I+ G I
Sbjct: 40 PPEIIEALRERVDHGVFGYPYGSDE---LYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGI 96
Query: 160 DLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADAV 214
L +R + PGD +V P + F A+ NG V++ P D + ++ + + A
Sbjct: 97 SLAIRALTKPGDGVVIQTPVY--PPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAF 154
Query: 215 EREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDE----------AYTEFS 260
E+ K L +P+NP G + E+L KI E+ + V+ DE + F+
Sbjct: 155 VDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFA 214
Query: 261 GLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFP 298
L R DN I L + SK LAGL+ Y
Sbjct: 215 SLSER-----FADNSITLTSASKTFNLAGLKCAYIIIS 247
>gnl|CDD|236128 PRK07908, PRK07908, hypothetical protein; Provisional.
Length = 349
Score = 58.1 bits (141), Expect = 1e-09
Identities = 71/230 (30%), Positives = 100/230 (43%), Gaps = 28/230 (12%)
Query: 108 GPPPEVRE----ALGQLKFPYIYPDPE-SRRLRAALAKDSGLESDHILVGCGADELIDLI 162
PP +RE LG L YP E RR RAA+A G D +L+ GA E L+
Sbjct: 35 TPPEWLRERLAARLGDLA---AYPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALL 91
Query: 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGA--AVVKVPRKSDFSLNVELI---ADAVERE 217
R L P V P+FT E +AA+ A V +V F L+ + AD V
Sbjct: 92 AR--LRPRRAAV-VHPSFT--EPEAALRAAGIPVHRVVLDPPFRLDPAAVPDDADLV--- 143
Query: 218 KPKCIFLTSPNNPDGSIINDEDLLKILEMPILVVLDEAYTEFSGLESRMEWVKKHDNLIV 277
+ +P NP + E LL + ++V+DEA+ + E ++V
Sbjct: 144 -----VIGNPTNPTSVLHPAEQLLALRRPGRILVVDEAFADAVPGEPESLAGDDLPGVLV 198
Query: 278 LRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAA--EVAACAA 325
LR+ +K LAGLRVGY ++ L R + + V +AAC A
Sbjct: 199 LRSLTKTWSLAGLRVGYALGAPDVLARLTRGRAHWPVGTLQLEAIAACCA 248
>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase. Members of this
family are the enzyme capreomycidine synthase, which
performs the second of two steps in the biosynthesis of
2S,3R-capreomycidine from arginine. Capreomycidine is an
unusual amino acid used by non-ribosomal peptide
synthases (NRPS) to make the tuberactinomycin class of
peptide antibiotic. The best characterized member is
VioD from the biosynthetic pathway for viomycin
[Cellular processes, Biosynthesis of natural products].
Length = 359
Score = 57.5 bits (139), Expect = 2e-09
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 7/173 (4%)
Query: 133 RLRAALAKDSGLESDH-ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNG 191
LRAA+A H ++ G+ E I L++ +L PGD++V P + A G
Sbjct: 55 GLRAAIADRWRGGDAHVVMTTHGSSEAIYLVLTALLRPGDEVVVVDPAYHSLSHLAVATG 114
Query: 192 AAVVKVPRKSDFSLNVELIA-DAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMP--- 247
V P + +L A A+ + + + + P+NP G+ + +L ++LE
Sbjct: 115 CEVRPWPLLAVRGFRPDLDALRALLTPRTRAVVVNFPHNPTGASVTPRELDELLERAARS 174
Query: 248 -ILVVLDEAYTEFS-GLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFP 298
+++ D A+ + + +D +I T SK GL GLRVG+ P
Sbjct: 175 GAVLLWDNAFADLVHDAPPLPDPSALYDRVISFGTLSKAFGLPGLRVGWCVGP 227
>gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated.
Length = 395
Score = 57.4 bits (139), Expect = 3e-09
Identities = 74/262 (28%), Positives = 119/262 (45%), Gaps = 26/262 (9%)
Query: 92 RKPEDIVKIDANENPYGP-PPEVREALGQL-KFPYIYPDPESR---RLRAALAK------ 140
R+ EDI+ NP GP PP + E L ++ + P + SR RLR A+++
Sbjct: 26 RRGEDIIDFSMG-NPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRY 84
Query: 141 DSGLESD-HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR 199
D ++ + +V G+ E + +M LD GD ++ P++ ++ + A + GA V VP
Sbjct: 85 DVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPL 144
Query: 200 KSDFSLNVELIADAVERE--KPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLD 253
EL A+ KPK + L P+NP + E K++ + +LVV D
Sbjct: 145 VEGVDFFNEL-ERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHD 203
Query: 254 EAYTE--FSGLE--SRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAK 309
AY + + G + S M+ D + T SK +AG R+G+ ++ L R K
Sbjct: 204 LAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIK 263
Query: 310 Q--PYNVSVAAEVAACAALQNP 329
Y +VAA AAL+
Sbjct: 264 SYHDYGTFTPLQVAAIAALEGD 285
>gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional.
Length = 386
Score = 57.3 bits (139), Expect = 4e-09
Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 33/214 (15%)
Query: 106 PYGPPPEVREALGQL-------KFPYIYPDPESRRLRAALAKDSG------LESDHILVG 152
Y PPPE+ AL + + + PE LR A A + + + +
Sbjct: 40 GYPPPPELLRALAEAAADPAAHLYGPVEGLPE---LREAYAAHYSRLYGAAISPEQVHIT 96
Query: 153 CGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSL--NVELI 210
G ++ M + GD+++ P + ++ + G V +P L +
Sbjct: 97 SGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAA 156
Query: 211 ADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLDEAYTEFS------ 260
+ + + I L +PNNP G + E L ++ ++ I ++LDE Y +F
Sbjct: 157 EALI-TPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAP 215
Query: 261 -GLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVG 293
L + +W D L+ L +FSK L G RVG
Sbjct: 216 HDLFADPDW---DDTLVHLYSFSKSYALTGHRVG 246
>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated.
Length = 398
Score = 56.7 bits (137), Expect = 5e-09
Identities = 61/225 (27%), Positives = 90/225 (40%), Gaps = 35/225 (15%)
Query: 96 DIVKIDANENPYGPPPEVREALG---QLKFPYIYPDPESRRLRAALAK------DSGLES 146
D VK D + PP ++EA + Y P LR A+ K +
Sbjct: 39 DPVKFD-----FQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITP 93
Query: 147 DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLN 206
D + V E + LI +LDPGD+I+ P++ Y G VP
Sbjct: 94 DDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGG----VPV---EYRT 146
Query: 207 VEL------IADAVER--EKPKCIFLTSPNNPDGSIINDEDLLKIL----EMPILVVLDE 254
+E I D ++ EK K I + +PNNP G++ + L +IL E + V+ DE
Sbjct: 147 IEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDE 206
Query: 255 AYTE--FSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAF 297
Y + G + K +IV+ SK G R+GY F
Sbjct: 207 IYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYF 251
>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional.
Length = 402
Score = 56.3 bits (136), Expect = 7e-09
Identities = 63/265 (23%), Positives = 114/265 (43%), Gaps = 27/265 (10%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPEVREAL------GQLKFPYIYPDPESRR-LRAALAKD 141
+L IV + E + P +++A G+ K+ + P R+ + A L +
Sbjct: 27 ELRAAGRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERR 86
Query: 142 SGLE--SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGA--AVVKV 197
+GL + I VG GA + I L + L+ GD+++ P + Y N +V
Sbjct: 87 NGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVAC 146
Query: 198 PRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI----LEMP-ILVVL 252
P + F L E + A+ + + + L +P+NP G++ + +L + L P +LV+
Sbjct: 147 PEEQGFKLTPEALEAAIT-PRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLT 205
Query: 253 DEAYTEFSGLESRMEWV-----KKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWR 307
D+ Y + + + D ++V SK + G R+GY A P +I + +
Sbjct: 206 DDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINK 265
Query: 308 -----AKQPYNVSVAAEVAACAALQ 327
+ P ++S AA AA Q
Sbjct: 266 LQSQSSSCPSSISQAAAAAALNGDQ 290
>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated.
Length = 386
Score = 56.1 bits (136), Expect = 9e-09
Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 39/212 (18%)
Query: 105 NPYGPP----PEVREALGQLKFPYIY---PDPESRRLRAALAKDSGLESDHILVGCGADE 157
N Y PP +REA+ K +Y D +S I V GA E
Sbjct: 61 NQY-PPMTGVAALREAIAA-KTARLYGRQYDADSE----------------ITVTAGATE 102
Query: 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP-RKSDFSLNVELIADAVER 216
+ + ++ PGD+++ P++ Y + G V+V + DF ++ + A A+
Sbjct: 103 ALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAIS- 161
Query: 217 EKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAYTE--FSGLESRMEWVK 270
+ + I L +P+NP G++ + D+ + ++ I V+ DE Y F G + V
Sbjct: 162 PRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDG--AGHASVL 219
Query: 271 KHDNL----IVLRTFSKRAGLAGLRVGYGAFP 298
+H L V+ +F K + G +VGY P
Sbjct: 220 RHPELRERAFVVSSFGKTYHVTGWKVGYCVAP 251
>gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase.
Length = 496
Score = 55.1 bits (132), Expect = 2e-08
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 35/195 (17%)
Query: 132 RRLRAALAKDSG--------LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMY 183
++ R A+A G + + +++ GA + IM C+ DPGD + P + +
Sbjct: 97 KKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAF 156
Query: 184 EFDAA-VNGAAVVKVPRKSDFSLNVELIADAVE---------REKPKCIFLTSPNNPDGS 233
+ D G ++ VP S S N +L DA + +K K + LT+P+NP G+
Sbjct: 157 DRDLRWRTGVEIIPVPCSS--SDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGT 214
Query: 234 IINDEDLLKILEM----PILVVLDEAY--TEFSG--LESRMEWVKKHD------NLI-VL 278
+++ + L ++ I +V+DE Y T F+G S E V D +LI ++
Sbjct: 215 MLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIV 274
Query: 279 RTFSKRAGLAGLRVG 293
+ SK GL G RVG
Sbjct: 275 YSLSKDMGLPGFRVG 289
>gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase. The four
sequences which make up the seed for this model are not
closely related, although they are all members of the
pfam00155 family of aminotransferases and are more
closely related to each other than to anything else.
Additionally, all of them are found in the vicinity of
genes involved in the biosynthesis of lysine via the
diaminopimelate pathway (GenProp0125), although this
amount to a separation of 12 genes in the case of
Sulfurihydrogenibium azorense Az-Fu1. None of these
genomes contain another strong candidate for this role
in the pathway. Note: the detailed information included
in the EC:2.6.1.17 record includes the assertions that
the enzyme uses the pyridoxal pyrophosphate cofactor,
which is consistent with the pfam00155 family, and the
assertion that the amino group donor is L-glutamate,
which is undetermined for the sequences in this clade.
Length = 350
Score = 53.7 bits (129), Expect = 4e-08
Identities = 61/242 (25%), Positives = 106/242 (43%), Gaps = 34/242 (14%)
Query: 110 PPEVREALGQLKFPYI--YPDPESRR-LRAALA----KDSGLESD---HILVGCGADELI 159
PP +R+AL P + YP + LR A++ + G++ D +L G+ E I
Sbjct: 15 PPFIRKALID-AVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAI 73
Query: 160 DLIMRCVLDPGD---KIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAV 214
+DP + +++ P + +YE A G V ++ F L +E + ++
Sbjct: 74 FHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSI 133
Query: 215 EREKPKCIFLTSPNNPDGSIINDEDLLKI----LEMPILVVLDEAYTEF-------SGLE 263
E K +++ P+NP G+ L + E I++ DE YTE S LE
Sbjct: 134 LEET-KIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALE 192
Query: 264 SRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAAC 323
+E N++ + SKR+G+ G R G+ A +I +L + + + V+ V A
Sbjct: 193 VGIE------NVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVASPDFVQAA 246
Query: 324 AA 325
A
Sbjct: 247 AK 248
>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated.
Length = 373
Score = 53.4 bits (129), Expect = 6e-08
Identities = 57/228 (25%), Positives = 108/228 (47%), Gaps = 21/228 (9%)
Query: 115 EALGQLKFPY--IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDK 172
+ LGQ K Y I PE + A+L + ++ ++IL GA L++ +++PGD
Sbjct: 49 QELGQKKLTYGWIEGSPEFKEAVASLYQ--NVKPENILQTNGATGANFLVLYALVEPGDH 106
Query: 173 IVDCPPTFT-MYEFDAAVNGAAV--VKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNN 229
++ PT+ +Y+ ++ GA V ++ ++ + +++ + V R K I + + NN
Sbjct: 107 VISVYPTYQQLYDIPESL-GAEVDYWQLKEENGWLPDLDELRRLV-RPNTKLICINNANN 164
Query: 230 PDGSIINDEDLLKILEMP------ILVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSK 283
P G++++ L +I+E+ +L DE Y S ++ I + SK
Sbjct: 165 PTGALMDRAYLEEIVEIARSVDAYVLS--DEVYRPLDEDGSTPSIADLYEKGISTNSMSK 222
Query: 284 RAGLAGLRVGYGAFPLSIIEYLWRAKQPYN---VSVAAEVAACAALQN 328
L G+RVG+ A +I+ L R + Y V ++ A AL++
Sbjct: 223 TYSLPGIRVGWIAANEEVIDIL-RKYRDYTMICAGVFDDMLASLALEH 269
>gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase;
Provisional.
Length = 385
Score = 52.2 bits (126), Expect = 1e-07
Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 17/190 (8%)
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIA 211
G+ E I I ++PGD ++ P + +Y+ G +P K + F +++ I
Sbjct: 101 GSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIP 160
Query: 212 DAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLDEAYTE--FSGLE-- 263
+ V + K K +F+ PNNP G++ + E ++++ I+V D AY+E + G +
Sbjct: 161 EDVAK-KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPP 219
Query: 264 SRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSV----AAE 319
S +E D I + SK + G R+G+ +I L + K NV A +
Sbjct: 220 SFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVKS--NVDSGVFQAIQ 277
Query: 320 VAACAALQNP 329
A AAL P
Sbjct: 278 EAGIAALNGP 287
>gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed.
Length = 389
Score = 51.5 bits (124), Expect = 2e-07
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 13/177 (7%)
Query: 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPKCI 222
C+++PGD I+ P + Y A+ A +P +++F + I + V EK K +
Sbjct: 113 CLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEV-AEKAKLM 171
Query: 223 FLTSPNNPDGSIINDEDLLKIL----EMPILVVLDEAY--TEFSGLE--SRMEWVKKHDN 274
+L PNNP G++ + + + I VV D AY F G + S ++ D
Sbjct: 172 YLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDV 231
Query: 275 LIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSV--AAEVAACAALQNP 329
I L T SK +AG RV + S+IE + + VS+ A + AA AL +
Sbjct: 232 GIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLSD 288
>gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated.
Length = 388
Score = 50.4 bits (121), Expect = 6e-07
Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 38/277 (13%)
Query: 78 QPILPFEVLSI-----QLGRKPEDIVKIDANENPYGPPPEVREAL------------GQL 120
I PF V+ + L R DI+ + E + P V EA L
Sbjct: 8 DAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSAL 67
Query: 121 KFPYIYPDPESRRLRAALAKDSGLESD--HILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
P + A A+ GL+ I+V GA + L +++ GD+++ P
Sbjct: 68 GLA-----PLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDP 122
Query: 179 TFTM-YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER---EKPKCIFLTSPNNPDGSI 234
++ F AA G V+ VP S + +L A VE E+ + + L SP+NP G+
Sbjct: 123 SYPCNRHFVAAAEGRPVL-VP--SGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTS 179
Query: 235 INDEDLLKILEMPI----LVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGL 290
I ++L +I+E ++DE Y S + + + D++I + +FSK + G
Sbjct: 180 IAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGW 239
Query: 291 RVGYGAFPLSIIEYLWRAKQPYNVSV-AAEVAACAAL 326
R+G+ P +++ + Q N+ + A+ +A AAL
Sbjct: 240 RLGWLVVPEALVGTFEKLAQ--NLFICASALAQHAAL 274
>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family
aminotransferase. This subfamily of pyridoxal
phosphate-dependent enzymes includes known examples of
both tyrosine aminotransferase from animals and
nicotianamine aminotransferase from barley.
Length = 403
Score = 50.4 bits (121), Expect = 6e-07
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 15/126 (11%)
Query: 144 LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVK---VPRK 200
L +D +++ G + I++ + + +PG I+ P F +Y+ AA +G V +P K
Sbjct: 94 LTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEK 153
Query: 201 S---DFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLD 253
D +E +AD EK I + +P+NP GS+ + + L KI E+ I ++ D
Sbjct: 154 DWEIDLD-GLESLAD----EKTVAIVVINPSNPCGSVFSRDHLQKIAEVAEKLGIPIIAD 208
Query: 254 EAYTEF 259
E Y
Sbjct: 209 EIYGHM 214
>gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional.
Length = 416
Score = 49.1 bits (118), Expect = 2e-06
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 12/81 (14%)
Query: 221 CIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLDEAY-TEFSGL---ESRMEWVKKH 272
I ++ P NP G+++ DE+L K+ + I +++D AY F G+ E+ W +
Sbjct: 182 AICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLW---N 238
Query: 273 DNLIVLRTFSKRAGLAGLRVG 293
N+I+ + SK GL G+R G
Sbjct: 239 PNIILCMSLSK-LGLPGVRCG 258
>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase.
Length = 409
Score = 48.4 bits (115), Expect = 2e-06
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 12/138 (8%)
Query: 129 PESRRLRAA-LAKD--SGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
P++RR A L++D L D + + G + ID+ + + PG I+ P F +YE
Sbjct: 76 PQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYEL 135
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVER---EKPKCIFLTSPNNPDGSIINDEDLLK 242
AA V V + V+L DAVE + + + +P NP G++ + + L K
Sbjct: 136 CAAFRHLEVRYVDLLPEKGWEVDL--DAVEALADQNTVALVIINPGNPCGNVYSYQHLKK 193
Query: 243 ILE----MPILVVLDEAY 256
I E + ILV+ DE Y
Sbjct: 194 IAETAEKLKILVIADEVY 211
>gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase;
Provisional.
Length = 430
Score = 47.5 bits (113), Expect = 5e-06
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 129 PESRRLRAALAKD--SGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD 186
P R + L++D L +D I + G + I++IM + PG I+ P + +YE
Sbjct: 98 PARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEAR 157
Query: 187 AAVNGAAVVK---VPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI 243
A +G V +P + + +++E + +A+ E + + +PNNP GS+ + E L KI
Sbjct: 158 AVFSGLEVRHFDLLPER-GWEVDLEGV-EALADENTVAMVIINPNNPCGSVYSYEHLAKI 215
Query: 244 LE----MPILVVLDEAY 256
E + ILV+ DE Y
Sbjct: 216 AETARKLGILVIADEVY 232
>gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional.
Length = 374
Score = 47.0 bits (112), Expect = 7e-06
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 24/143 (16%)
Query: 178 PTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPKC--IFLTSPNNPDGS 233
P + +YE A + A V+ +P +++DF+ ++ E+E + + L SPNNP G
Sbjct: 117 PFYQIYEGAAIASRAKVLLMPLTKENDFTPSLN------EKELQEVDLVILNSPNNPTGR 170
Query: 234 IINDEDLL----KILEMPILVVLDEAYTEF-------SGLESRMEWVKKHD--NLIVLRT 280
++ E+L+ L+ +++ DE Y+E S LE+ + V N++V+ +
Sbjct: 171 TLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASIL-VGNESFKNVLVINS 229
Query: 281 FSKRAGLAGLRVGYGAFPLSIIE 303
SKR+ GLR G+ A SI++
Sbjct: 230 ISKRSSAPGLRSGFIAGDASILK 252
>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional.
Length = 387
Score = 46.6 bits (111), Expect = 1e-05
Identities = 57/212 (26%), Positives = 94/212 (44%), Gaps = 23/212 (10%)
Query: 134 LRAALA----KDSGLESD--HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE-FD 186
LR A+A + G++ D ILV G + L ++DPG + P + F
Sbjct: 74 LREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFL 133
Query: 187 AAVNGAAV-VKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE 245
V GAA V V S + L L+ + + SP NP G++++ ++L + +
Sbjct: 134 RLVEGAAQLVPVGPDSRYQLTPALV-ERHWNADTVGALVASPANPTGTLLSRDELAALSQ 192
Query: 246 -----MPILVVLDEAYTEFSGLESRMEW---VKKHDNLIVLRTFSKRAGLAGLRVGYGAF 297
LVV DE Y GL ++ ++ D+ VL +FSK G+ G R+G+
Sbjct: 193 ALRARGGHLVV-DEIY---HGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVA 248
Query: 298 PLSIIEYLWRAKQPYNVSVA--AEVAACAALQ 327
P + + L + Q +S + A+ AA A +
Sbjct: 249 PPAAVPELEKLAQNLYISASTPAQHAALACFE 280
>gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase. This
clade of the pfam00155 superfamily of aminotransferases
includes several which are adjacent to elements of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125). This clade includes characterized species
in plants and Chlamydia. Every member of this clade is
from a genome which possesses most of the lysine
biosynthesis pathway but lacks any of the known
succinylases, desuccinylases, acetylases or deacetylases
typical of the acylated versions of this pathway nor do
they have the direct, NADPH-dependent enzyme (ddh).
Length = 402
Score = 45.9 bits (109), Expect = 2e-05
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 222 IFLTSPNNPDGSIINDEDLLKI----LEMPILVVLDEAYTEF---SGL-ESRMEWVKKHD 273
I+L SPNNP G+++ E L ++ E L++ D AY+ F L S E
Sbjct: 177 IYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGARF 236
Query: 274 NLIVLRTFSKRAGLAGLRVGYGAFP 298
I R+FSK AG G+R+G+ P
Sbjct: 237 CAIEFRSFSKTAGFTGVRLGWTVVP 261
>gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional.
Length = 384
Score = 45.5 bits (108), Expect = 2e-05
Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 12/172 (6%)
Query: 169 PGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLNVELIADAVEREKPKCIFLTSP 227
PGD+++ P+F Y + GA V + DF +N + +A A+ + + I + +P
Sbjct: 113 PGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAIT-PRTRMIIVNTP 171
Query: 228 NNPDGSIINDEDLLKILEMP----ILVVLDEAYTEFSGLESRMEWVKKHDNL----IVLR 279
+NP ++ + DL ++ ++ I+++ DE Y +R + +H L +++
Sbjct: 172 HNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVS 231
Query: 280 TFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ--PYNVSVAAEVAACAALQNP 329
+F K + G RVGY P +++ + + Q ++ + A AL P
Sbjct: 232 SFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEP 283
>gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase;
Validated.
Length = 332
Score = 45.6 bits (108), Expect = 2e-05
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 172 KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNV-ELIADAVEREKPKCIFLTSPNNP 230
I+ P F Y+ A +G R S N+ + + IF+ SP+NP
Sbjct: 81 NIIIVEPNFNEYKGYAFTHGI------RISALPFNLINNNPEILNNYNFDLIFIVSPDNP 134
Query: 231 DGSIINDEDLLKILE----MPILVVLDEAYTEF--SGLESRMEWVKKHDNLIVLRTFSKR 284
G++I+ + LL I E L+ +DEA+ +F + E + + + N+I+ R+ +K
Sbjct: 135 LGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKI 194
Query: 285 AGLAGLRVGY 294
G+ LR+GY
Sbjct: 195 LGIPSLRIGY 204
>gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase. Members of this
subfamily are probable C-S lyases from a family of
pyridoxal phosphate-dependent enzymes that tend to be
(mis)annotated as probable aminotransferases. One member
is PatB of Bacillus subtilis, a proven C-S-lyase.
Another is the virulence factor cystalysin from
Treponema denticola, whose hemolysin activity may stem
from H2S production. Members of the seed alignment occur
next to examples of the enzyme 5-histidylcysteine
sulfoxide synthase, from ovothiol A biosynthesis, and
would be expected to perform a C-S cleavage of
5-histidylcysteine sulfoxide to leave
1-methyl-4-mercaptohistidine (ovothiol A).
Length = 384
Score = 45.4 bits (108), Expect = 2e-05
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 28/212 (13%)
Query: 110 PPEVREALGQ-LKFP-YIYPDPESRRLRAA---LAK--DSGLESDHILVGCGADELIDLI 162
PP V EAL Q L+ P + Y P A LA+ ++ + I+ G +
Sbjct: 40 PPAVLEALKQRLEHPVFGYTLPPDSLYAAVINWLAQRHGWQIDPEWIVFLPGVVPSLFAA 99
Query: 163 MRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADAVERE 217
+R + PG+ ++ P + F +AV NG +V P K D + ++E + DA+ E
Sbjct: 100 VRALTAPGEGVIVQTPVY--PPFLSAVKSNGRELVLNPLKLDPGRYRFDLEDLEDAI-TE 156
Query: 218 KPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAYTEFSGLE-------SRM 266
K + + L SP+NP G + E+L ++ E+ ++VV DE + + S
Sbjct: 157 KARLLLLCSPHNPVGRVWTREELTRLAELCLRHNVVVVSDEIHADLVYPPNKHIPLASLS 216
Query: 267 EWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFP 298
+ + + L + K +AGL + + P
Sbjct: 217 PEIAE--RTVTLLSPGKTFNIAGLNISFAIIP 246
>gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or
valine-pyruvate) aminotransferase [Amino acid transport
and metabolism].
Length = 417
Score = 44.8 bits (106), Expect = 4e-05
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 217 EKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLDEAY-TEFSGL---ESRMEW 268
E I ++ P NP G+++ DE+L K+ + I +++D AY F G+ ++ W
Sbjct: 178 ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLW 237
Query: 269 VKKHDNLIVLRTFSKRAGLAGLRVG 293
++N+I+ + SK GL G R G
Sbjct: 238 ---NENIILCMSLSK-LGLPGSRCG 258
>gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase;
Validated.
Length = 409
Score = 43.7 bits (104), Expect = 8e-05
Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 217 EKPKCIFLTSPNNPDGSIINDEDLLKI----LEMPILVVLDEAYTEF---SGL-ESRMEW 268
EK I+L PNNP G+++ E L E L++ D AY F L S E
Sbjct: 175 EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEI 234
Query: 269 VKKHDNLIVLRTFSKRAGLAGLRVGY 294
+ I R+FSK AG G R Y
Sbjct: 235 EGARECAIEFRSFSKTAGFTGTRCAY 260
>gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1.
Length = 462
Score = 43.9 bits (103), Expect = 8e-05
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 9/120 (7%)
Query: 144 LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVK---VPRK 200
L + I + G ++ I+++ + P I+ P F Y+ AA +G V K +P K
Sbjct: 129 LTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEK 188
Query: 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE----MPILVVLDEAY 256
++ +++E I +A+ E + + +PNNP G++ + + L K+ E + I+V+ DE Y
Sbjct: 189 -EWEIDLEGI-EAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVY 246
>gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing
protein/aminotransferase; Provisional.
Length = 517
Score = 44.0 bits (104), Expect = 9e-05
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 18/166 (10%)
Query: 142 SGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVN---GAAVVKV- 197
++ D I G G ELI+L M +LD GD+++ P + ++ A VN G AV
Sbjct: 204 PNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWT--ACVNLAGGTAVHYRC 261
Query: 198 PRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLD 253
+S++ +++ I + + K I + +PNNP G++ E L +I+++ +++ D
Sbjct: 262 DEQSEWYPDIDDIRSKIT-SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSD 320
Query: 254 EAYTE--FSGLESRMEWVKKHDNLIVLRTF---SKRAGLAGLRVGY 294
E Y GLE D V TF SK +AG R+G+
Sbjct: 321 EIYDRLVMDGLEHTSIASLAPDLFCV--TFSGLSKSHMIAGYRIGW 364
>gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase;
Provisional.
Length = 396
Score = 42.6 bits (101), Expect = 2e-04
Identities = 68/266 (25%), Positives = 116/266 (43%), Gaps = 50/266 (18%)
Query: 70 HLRKLKPYQPILPFEVLSIQL--GRKPE---DIVKIDANENPYGPPPE-VREA----LGQ 119
L +L+PY PFE L L G P + + E P P P +++A L
Sbjct: 4 RLDRLQPY----PFEKLR-ALFAGVTPPADLPPISLSIGE-PKHPTPAFIKDALAANLDG 57
Query: 120 L-KFPYIYPDPESRRLRAALA----KDSGLES----DHILVGCGADELIDLIMRCVLDPG 170
L +P P LR A+A + GL + +L G+ E + + V+D
Sbjct: 58 LASYPTTAGLPA---LREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRD 114
Query: 171 DK--IVDCP-PTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVEREKPKCIFLT 225
+V CP P + +YE A + GA + ++F+ + + + V + + +F+
Sbjct: 115 GPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWA-RTQLLFVC 173
Query: 226 SPNNPDGSIINDEDLLKILEMP----ILVVLDEAYTEF---------SGLESRMEWVKKH 272
SP NP G+++ +D K+ + ++ DE Y+E LE+ E + +
Sbjct: 174 SPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAE-LGRD 232
Query: 273 D--NLIVLRTFSKRAGLAGLRVGYGA 296
D L+V + SKR+ + GLR G+ A
Sbjct: 233 DFKRLVVFHSLSKRSNVPGLRSGFVA 258
>gnl|CDD|180188 PRK05664, PRK05664, threonine-phosphate decarboxylase; Reviewed.
Length = 330
Score = 42.3 bits (100), Expect = 2e-04
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 207 VELIADAVEREKPKC--IFLTSPNNPDGSIINDEDLL----KILEMPILVVLDEAYTEFS 260
EL VE + + +PNNP G + LL ++ +V+DEA+ + +
Sbjct: 111 RELDEAEVEAALDSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT 170
Query: 261 GLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEV 320
S + LIVLR+F K GLAG R+G+ +++ L P+ VS
Sbjct: 171 PQHS-LAACAHRPGLIVLRSFGKFFGLAGARLGFVLAEPALLRALAELLGPWTVSGPTRW 229
Query: 321 AACAALQN 328
A AAL +
Sbjct: 230 LAQAALAD 237
>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated.
Length = 404
Score = 42.5 bits (101), Expect = 2e-04
Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 17/125 (13%)
Query: 143 GLESDHILVGCGADELIDLIMRCVLDPGDKI-VDCP--PTFTMYEFDAAVN---GAAV-V 195
++ D I +G G ELI + M+ +L+ GD++ V P P +T AAV+ G V
Sbjct: 92 DVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWT-----AAVSLSGGKPVHY 146
Query: 196 KVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVV 251
++ + +++ I + + K I + +PNNP G++ + E L +I+E+ +++
Sbjct: 147 LCDEEAGWFPDLDDIRSKIT-PRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIF 205
Query: 252 LDEAY 256
DE Y
Sbjct: 206 ADEIY 210
>gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase;
Provisional.
Length = 409
Score = 41.5 bits (97), Expect = 4e-04
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 8/159 (5%)
Query: 144 LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDF 203
L D + + G ++I++ + P I+ P F E A + + +
Sbjct: 95 LSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEK 154
Query: 204 SLNVELIA-DAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE----MPILVVLDEAYTE 258
V+L A +A+ E + + +P NP GS+ + E L KI E + ILV+ DE Y
Sbjct: 155 GWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGH 214
Query: 259 F---SGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGY 294
S M +I L + SKR + G +G+
Sbjct: 215 IVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGW 253
>gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase.
Length = 447
Score = 41.4 bits (97), Expect = 5e-04
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 133 RLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGA 192
++R A+ + D I++ GA +L+ + DPGD ++ PT FD +
Sbjct: 110 QIRGGKAR---FDPDRIVLTAGATAANELLTFILADPGDALL--VPTPYYPGFDRDLRWR 164
Query: 193 AVVK-VPRKSDFSLNVELIADAVERE---------KPKCIFLTSPNNPDGSIINDEDLLK 242
VK VP D S N ++ A+E + + + +T+P+NP G+ + L
Sbjct: 165 TGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLED 224
Query: 243 ILEMP----ILVVLDEAYT-------EFSG----LESRMEWVKKHDNLIVLRTFSKRAGL 287
IL+ I +V DE Y+ EF +E+R + + + ++ + SK GL
Sbjct: 225 ILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEAR-GYKGVAERVHIVYSLSKDLGL 283
Query: 288 AGLRVG 293
G RVG
Sbjct: 284 PGFRVG 289
>gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional.
Length = 387
Score = 40.3 bits (95), Expect = 8e-04
Identities = 54/199 (27%), Positives = 81/199 (40%), Gaps = 38/199 (19%)
Query: 83 FEVLSIQLGRKPEDIVKIDANEN-----PYGP-PPEVREALGQ--LKFPYIYPD----PE 130
FEV+S QL R+ I N P P P +VR A L YP PE
Sbjct: 16 FEVMS-QLAREHGAI-------NLGQGFPDDPGPEDVRRAAADALLDGSNQYPPMMGLPE 67
Query: 131 SRRLRAALAKDS----GLESD---HILVGCGADE-LIDLIMRCVLDPGDKIVDCPPTFTM 182
LR A+A GL+ D ++V GA E L ++ +++PGD++V P +
Sbjct: 68 ---LRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALL-ALVEPGDEVVLFQPLYDA 123
Query: 183 YEFDAAVNGAAVVKVPRKS-DFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLL 241
Y G V + + L +A A + K + L +P NP G + E+L
Sbjct: 124 YLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFS-PRTKAVLLNNPLNPAGKVFPREELA 182
Query: 242 KILEMPI----LVVLDEAY 256
+ E + + DE +
Sbjct: 183 LLAEFCQRHDAVAICDEVW 201
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown [Unknown function, Enzymes of
unknown specificity].
Length = 376
Score = 40.4 bits (95), Expect = 0.001
Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 29/174 (16%)
Query: 107 YGPPPEVREALGQ-LKFPYIYPDPESRRL-----------RAALAKDSGL-ESDHILVGC 153
Y P EV EA+ K P RL R LAK S H++
Sbjct: 10 YPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTN 69
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV---------NGAAVVKVPRKSDFS 204
A +++ ++ +L GD ++ T E ++ G + V ++
Sbjct: 70 NATTALNIALKGLLKEGDHVIT-----TPMEHNSVARPLECLKEQIGVEITIVKCDNEGL 124
Query: 205 LNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKIL-EMPILVVLDEAYT 257
++ E I A+ + K I ++ +N G+I+ E++ ++ E I +LD A T
Sbjct: 125 ISPERIKRAI-KTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQT 177
>gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional.
Length = 394
Score = 40.5 bits (95), Expect = 0.001
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 167 LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS--DFSLNVELIADAVEREKPKCIFL 224
++PGD ++ P + + + GA + + K D+ +++ I + V + + K ++
Sbjct: 118 VNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQ-QAKILYF 176
Query: 225 TSPNNPDGSIINDEDLLKILEMP----ILVVLDEAYTE--FSGLE--SRMEWVKKHDNLI 276
P+NP + E +I+ I++V D Y E F G + S +E D +
Sbjct: 177 NYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGV 236
Query: 277 VLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ--PYNVSVAAEVAACAALQNP-IYLE 333
T SK +AG RVG+ II+ L K Y + A + AA ALQ P YL+
Sbjct: 237 EFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQ 296
>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional.
Length = 412
Score = 40.2 bits (94), Expect = 0.001
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 27/210 (12%)
Query: 100 IDANE-NPYGP---PPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGA 155
+D+ E N Y P PE REA+ L++ + KD ++++ G
Sbjct: 63 VDSQECNGYPPTVGSPEAREAVATYWRNSFVHKES---LKSTIKKD------NVVLCSGV 113
Query: 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEF--DAAVNGAAVVKVPRKSDFSLNVELIADA 213
I + + + D GD I+ P F YE A + D+ +++ I
Sbjct: 114 SHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRL 173
Query: 214 VEREKPKCIFLTSPNNPDGSIIND---EDLLKILE-MPILVVLDEAYTE--FSGLESRME 267
V+ ++ K + +T+P+NP GS + ED++++ E + + ++ DE Y F+G +
Sbjct: 174 VD-DRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNG--ATFT 230
Query: 268 WVKKHDN---LIVLRTFSKRAGLAGLRVGY 294
V D ++L +K + G R+G+
Sbjct: 231 SVADFDTTVPRVILGGTAKNLVVPGWRLGW 260
>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic.
This model describes tyrosine aminotransferase as found
in animals and Trypanosoma cruzi. It is the first enzyme
of a pathway of tyrosine degradation via homogentisate.
Several plant enzyme designated as probable tyrosine
aminotransferases are very closely related to an
experimentally demonstrated nicotianamine
aminotransferase, an enzyme in a siderophore (iron
uptake chelator) biosynthesis pathway. These plant
sequences are excluded from the model seed and score
between the trusted an noise cutoffs [Energy metabolism,
Amino acids and amines].
Length = 401
Score = 40.2 bits (94), Expect = 0.001
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 135 RAALAK-----DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV 189
R A+A D +E+D +++ G I++ + + + G I+ P F +Y A
Sbjct: 79 REAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYRTLAES 138
Query: 190 NGAAVVKVPRKSDFSLNVELIA-DAVEREKPKCIFLTSPNNPDGSIINDEDLLKIL---- 244
G V D S ++L +++ EK + + +P+NP GS+ + + L +IL
Sbjct: 139 MGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALVVNNPSNPCGSVFSRQHLEEILAVAE 198
Query: 245 EMPILVVLDEAYTEF 259
+ ++ DE Y +
Sbjct: 199 RQCLPIIADEIYGDM 213
>gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated.
Length = 405
Score = 39.7 bits (93), Expect = 0.002
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 25/179 (13%)
Query: 169 PGDKIVDCP-PTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE------KPKC 221
PGD I+ CP P++ ++ F + G + VP + D E A+ER KP
Sbjct: 115 PGDVIL-CPNPSYPIHAFGFIMAGGVIRSVPAEPD-----EEFFPALERAVRHSIPKPIA 168
Query: 222 IFLTSPNNPDGSIINDEDLLKIL-----EMPILVVLDEAYTE--FSGL--ESRMEWVKKH 272
+ + P+NP + D D K + + I+++ D AY+E F G S ++
Sbjct: 169 LIVNYPSNPTAYVA-DLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAK 227
Query: 273 DNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ--PYNVSVAAEVAACAALQNP 329
D + + SK +AG R+G+ +I L R K Y +VAA AAL P
Sbjct: 228 DVTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNGP 286
>gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional.
Length = 527
Score = 38.7 bits (91), Expect = 0.003
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 34/149 (22%)
Query: 166 VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLN-VELIADAV--------ER 216
+L GDKI P FT Y +++P + L V + AD E
Sbjct: 186 LLKAGDKIALMTPIFTPY-----------LEIPELPRYDLEVVHINADEENEWQYPDSEL 234
Query: 217 EK---P--KCIFLTSPNNPDGSIINDEDLLKILEM-----PILVVL-DEAYTEFS-GLES 264
EK P K +FL +P+NP ++DE L KI ++ P L+++ D+ Y F S
Sbjct: 235 EKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRS 294
Query: 265 RMEWVKKHDNLIVLRTFSKRAGLAGLRVG 293
+ N I++ +FSK G G R+G
Sbjct: 295 LFAVLPY--NTILVYSFSKYFGATGWRLG 321
>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine
gamma-synthases [Amino acid transport and metabolism].
Length = 396
Score = 38.3 bits (90), Expect = 0.004
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 159 IDLIMRCVLDPGDKIV---DC-PPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAV 214
I + +L GD ++ D T+ ++E G V V D + L A A+
Sbjct: 91 ISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFV----DPGDDEALEA-AI 145
Query: 215 EREKPKCIFLTSPNNPDGSIINDEDLLKIL----EMPILVVLDE 254
+ K +FL +P+NP + D+ I LVV+D
Sbjct: 146 KEPNTKLVFLETPSNPLLEVP---DIPAIARLAKAYGALVVVDN 186
>gnl|CDD|218297 pfam04864, Alliinase_C, Allinase. Allicin is a thiosulphinate that
gives rise to dithiines, allyl sulphides and ajoenes,
the three groups of active compounds in Allium species.
Allicin is synthesised from sulfoxide cysteine
derivatives by alliinase (EC:4.4.1.4), whose C-S lyase
activity cleaves C(beta)-S(gamma) bonds. It is thought
that this enzyme forms part of a primitive plant defence
system.
Length = 362
Score = 38.1 bits (89), Expect = 0.005
Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 55/170 (32%)
Query: 148 HILVGCGADELIDLIM------RCVLDPGDKIVDCPPTFTMYE-----FDAAV-----NG 191
+I+ G G+ +L+ + P K+V P +++Y+ FD+ N
Sbjct: 68 YIVFGTGSTQLLQAAVYALSPNATPTSPPVKVVAAAPYYSVYKEQTSYFDSKGYKWEGNA 127
Query: 192 AAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMPIL-- 249
AA V F +EL+ TSPNNPDG L ++
Sbjct: 128 AAYVNTDNPGPF---IELV--------------TSPNNPDG----------TLREAVIDG 160
Query: 250 --VVLDEAY--TEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYG 295
+ D AY ++ + + D I+L T SK G AG R G+
Sbjct: 161 SKAIHDLAYYWPHYTPITYPAD----ED--IMLFTMSKYTGHAGSRFGWA 204
>gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase.
Length = 468
Score = 37.8 bits (88), Expect = 0.006
Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 24/173 (13%)
Query: 145 ESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAA-VNGAAVVKVPRKS-- 201
+ + +++ GA + +M C+ +PGD + P + ++ D G +V + S
Sbjct: 110 DPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSN 169
Query: 202 DFSLNVELIADAVERE-----KPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVL 252
F + + +A ++ K K + +T+P+NP G+ +L +++ I ++
Sbjct: 170 GFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLIS 229
Query: 253 DEAYT----EFSGLESRMEWVKKH--------DNLIVLRTFSKRAGLAGLRVG 293
DE Y+ + G S ME +K + + ++ + SK GL G RVG
Sbjct: 230 DEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVG 282
>gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase. This enzyme,
aspartate 4-decarboxylase (EC 4.1.1.12), removes the
side-chain carboxylate from L-aspartate, converting it
to L-alanine plus carbon dioxide. It is a PLP-dependent
enzyme, homologous to aspartate aminotransferase (EC
2.6.1.1) [Energy metabolism, Amino acids and amines].
Length = 521
Score = 36.9 bits (86), Expect = 0.014
Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 39/153 (25%)
Query: 167 LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELI-ADAVERE-------- 217
L GDKI P FT Y +++P + V I AD + +
Sbjct: 181 LKKGDKIALMTPIFTPY-----------LEIPELPRYDFEVVRIKADEMTEDGTHTWQYP 229
Query: 218 ----------KPKCIFLTSPNNPDGSIINDEDLLKILEM-----PILVVL-DEAYTEFS- 260
K +F+ +P+NP ++DE + KI+++ P L++L D+ Y F
Sbjct: 230 DKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD 289
Query: 261 GLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVG 293
S + N I + +FSK G G R+G
Sbjct: 290 DFRSLFAELPY--NTIGVYSFSKYFGATGWRLG 320
>gnl|CDD|150189 pfam09432, THP2, Tho complex subunit THP2. The THO complex plays a
role in coupling transcription elongation to mRNA
export. It is composed of subunits THP2, HPR1, THO2 and
MFT1.
Length = 132
Score = 34.8 bits (80), Expect = 0.020
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 86 LSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAK 140
L+ QL R + N+ PPPE++ L Q Y P+ LRA L K
Sbjct: 15 LAKQLERSDFSSEVVLVNKWG--PPPELQAILKQ----YDAEAPDIEVLRAELLK 63
>gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional.
Length = 403
Score = 35.8 bits (83), Expect = 0.024
Identities = 42/184 (22%), Positives = 79/184 (42%), Gaps = 18/184 (9%)
Query: 164 RCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVERE---- 217
+ + +PGD + P + ++ + G V K+P + DF L+ + + +E+
Sbjct: 113 QAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRES 172
Query: 218 --KPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLDEAYTE--FSGLE--SRME 267
KPK + + P+NP + + +++ + ++ D AY + F G + S +E
Sbjct: 173 SPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILE 232
Query: 268 WVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ--PYNVSVAAEVAACAA 325
D + T SK +AG RVG+ ++ L + K Y + +VAA A
Sbjct: 233 VEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIA 292
Query: 326 LQNP 329
L
Sbjct: 293 LDGD 296
>gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional.
Length = 481
Score = 34.9 bits (81), Expect = 0.055
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 154 GADELIDLIMRCVL-DPGDKIVDCP-PTFTMYEFDAAVNGAAVVKVPRKSD--FSLNVEL 209
GA I L+++ ++ DP D ++ P P + +Y + G V + +SL+ E
Sbjct: 146 GASSGIKLLLQLLIGDPSDGVM-IPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEE 204
Query: 210 IADAVEREK-----PKCIFLTSPNNPDGSIINDEDLLKIL----EMPILVVLDEAYTE 258
+ +A E+ P+ + + +P NP G ++ + + +I+ E I+++ DE Y E
Sbjct: 205 LEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQE 262
>gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino
acid transport and metabolism].
Length = 396
Score = 33.4 bits (77), Expect = 0.15
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 229 NPDGSIINDEDLLKILEM----PILVVLDEAYTEF-SGLES-----RMEWVKKHDNLIVL 278
NP G +E ++ ++ ++ D AY F GLE R + + L+V
Sbjct: 183 NPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALR-LFAEVGPELLVA 241
Query: 279 RTFSKRAGLAGLRVGY 294
+FSK GL G RVG
Sbjct: 242 SSFSKNFGLYGERVGA 257
>gnl|CDD|223780 COG0708, XthA, Exonuclease III [DNA replication, recombination, and
repair].
Length = 261
Score = 33.0 bits (76), Expect = 0.17
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 21/93 (22%)
Query: 94 PEDI-----VKIDANENPYGPPPEVREALGQLK-------FPYIYPDPE-----SRRLRA 136
PE+I K NE G PE R +L F +P+PE R A
Sbjct: 153 PEEIDVANPKKRWLNEGNSGFLPEERAWFRRLLNAGFVDTFRLFHPEPEKYTWWDYRANA 212
Query: 137 ALAKDSGLESDHILVGCGADELIDLIMRCVLDP 169
A ++ G D+ILV + L D + +D
Sbjct: 213 A-RRNRGWRIDYILV---SPALADRLKDAGIDR 241
>gnl|CDD|235897 PRK06959, PRK06959, putative threonine-phosphate decarboxylase;
Provisional.
Length = 339
Score = 33.1 bits (76), Expect = 0.19
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 226 SPNNPDGSIINDEDLL----KILEMPILVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTF 281
+PNNP + LL ++ +++DEA+ + S + L+VLR+
Sbjct: 138 NPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDR-PGLVVLRSV 196
Query: 282 SKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAAL 326
K GLAG+R G+ +++ L A + VS A A AA
Sbjct: 197 GKFFGLAGVRAGFVLAAPALLAALRDALGAWTVSGPARHAVRAAF 241
>gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase.
Length = 534
Score = 33.0 bits (75), Expect = 0.21
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 34/193 (17%)
Query: 134 LRAALAKDSGLES--------DHILVGCGADELIDLIMRCVLDPGDKIVDCP-PTFTMYE 184
LR A+A +G+E+ + I + GA + ++M+ ++ + CP P + +Y
Sbjct: 173 LRDAIA--AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYS 230
Query: 185 FDAAVNGAAVVK--VPRKSDFSLNVELIADAVEREK-----PKCIFLTSPNNPDGSII-- 235
A++G +V + + + L + + +E + + + + +P NP G ++
Sbjct: 231 ASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAE 290
Query: 236 -NDEDLLKILEMPILVVL-DEAYTE-----------FSGLESRMEWVKKHDNLIVLRTFS 282
N D+++ + LV+L DE Y E F + M + +K +L+ ++ S
Sbjct: 291 ENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVS 350
Query: 283 K-RAGLAGLRVGY 294
K G G R GY
Sbjct: 351 KGYYGECGKRGGY 363
>gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional.
Length = 405
Score = 32.8 bits (75), Expect = 0.22
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 222 IFLTS-PNNPDGSIINDEDLLKILEMP----ILVVLDEAYTE--FSGLES---RMEWVKK 271
+FL S PNNP G + + E++ +I + V++D+ Y+ + G R +
Sbjct: 181 VFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDP 240
Query: 272 HDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIE 303
+N+I + SK L+G R+G +II+
Sbjct: 241 -ENVITIMGPSKTESLSGYRLGVAFGSPAIID 271
>gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional.
Length = 410
Score = 32.7 bits (75), Expect = 0.29
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPKCI 222
C ++PGD + P + + G V +P +++F +++ I + +EK K +
Sbjct: 125 CFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDI-KEKAKLL 183
Query: 223 FLTSPNNPDGSIINDEDLLKILEMP----ILVVLDEAY 256
+L PNNP G++ E ++++ I+VV D AY
Sbjct: 184 YLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAY 221
>gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase.
Length = 407
Score = 32.1 bits (73), Expect = 0.35
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 25/173 (14%)
Query: 147 DHILVGCGADELIDLIMRCVL-DPGDKIVDCPPTFTMYEFDAAVNGAAVVK--VPRKSDF 203
+ I + GA + + I+ V+ D ++ P + +Y ++ G +V + ++
Sbjct: 131 ELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLLGGTLVPYYLEESENW 190
Query: 204 SLNVELIADAVE--REK---PKCIFLTSPNNPDGSIINDEDLLKILEMPI---LVVL-DE 254
L+V + +V R K + + + +P NP G +++ +L +IL+ LV+L DE
Sbjct: 191 GLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDE 250
Query: 255 AYTE---------FSGLESRMEW---VKKHDNLIVLRTFSK-RAGLAGLRVGY 294
Y + S + M+ + K L+ T SK G G R GY
Sbjct: 251 VYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGY 303
>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
family. This family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The major groups in this CD correspond to
alanine-glyoxylate aminotransferase (AGAT),
serine-glyoxylate aminotransferase (SGAT), and
3-hydroxykynurenine transaminase (HKT). AGAT is a
homodimeric protein, which catalyses the transamination
of glyoxylate to glycine, and SGAT converts serine and
glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
the PLP-dependent transamination of 3-hydroxykynurenine,
a potentially toxic metabolite of the kynurenine
pathway.
Length = 356
Score = 30.7 bits (70), Expect = 0.90
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 187 AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKIL-E 245
A GA V V + +++ E IA+A+E+ K + LT G + E + + +
Sbjct: 93 AERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKK 152
Query: 246 MPILVVLDEAYTEFSGLESRM-EW 268
L+++D A + G RM EW
Sbjct: 153 HDALLIVD-AVSSLGGEPFRMDEW 175
>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
enzyme. This family includes enzymes involved in
cysteine and methionine metabolism. The following are
members: Cystathionine gamma-lyase, Cystathionine
gamma-synthase, Cystathionine beta-lyase, Methionine
gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
sulfhydrylase All of these members participate is
slightly different reactions. All these enzymes use PLP
(pyridoxal-5'-phosphate) as a cofactor.
Length = 382
Score = 31.0 bits (71), Expect = 0.91
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 23/106 (21%)
Query: 159 IDLIMRCVLDPGDKIV---DC-PPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAV 214
I + +L GD +V D T+ ++E G V V D S DA+
Sbjct: 80 IFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFGIEVTFV----DPS-----DLDAL 130
Query: 215 E---REKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLD 253
E + K +FL +P NP ++ D+ I ++ LVV+D
Sbjct: 131 EAAIKPNTKAVFLETPTNPLLKVV---DIEAIAKIAKKHGALVVVD 173
>gnl|CDD|217689 pfam03717, PBP_dimer, Penicillin-binding Protein dimerisation
domain. This domain is found at the N terminus of Class
B High Molecular Weight Penicillin-Binding Proteins. Its
function has not been precisely defined, but is strongly
implicated in PBP polymerisation. The domain forms a
largely disordered 'sugar tongs' structure.
Length = 167
Score = 30.0 bits (68), Expect = 1.0
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 90 LGRKPEDIVKI--DANENPYGP-------PPEVREALGQLKFPYIYPDPESRR 133
LG PE+I+K + + Y P PE + +LK P + + E +R
Sbjct: 47 LGLDPEEILKKLKEKDAKSYEPVVLKRNLSPEEAARIKELKLPGVSIEEEPKR 99
>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.
Length = 385
Score = 30.5 bits (70), Expect = 1.3
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 27/96 (28%)
Query: 248 ILVVLDEAY------------TEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYG 295
L+V DEA+ +GL ++I++ T K G +G
Sbjct: 200 WLLV-DEAHGTGVLGPQGRGLAAEAGLAGE-------PDVILVGTLGKALGSSG---AAV 248
Query: 296 AFPLSIIEYLWRAKQPY----NVSVAAEVAACAALQ 327
++I+YL +P+ + A AA AAL+
Sbjct: 249 LGSETLIDYLINRARPFIFTTALPPAQAAAARAALR 284
>gnl|CDD|235160 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 448
Score = 30.3 bits (69), Expect = 1.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 254 EAYTEFSGLESRMEWVKKHD 273
E F+GL R EWV++
Sbjct: 297 EVLRTFTGLPHRCEWVREVA 316
>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent
acyltransferase, putative. This model represents an
enzyme subfamily related to three known enzymes; it
appears closest to glycine C-acteyltransferase, shows no
overlap with it in species distribution, and may share
that function. The three closely related enzymes are
glycine C-acetyltransferase (2-amino-3-ketobutyrate
coenzyme A ligase), 5-aminolevulinic acid synthase, and
8-amino-7-oxononanoate synthase. All transfer the
R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from
coenzyme A to an amino acid (Gly, Gly, Ala,
respectively), with release of CO2 for the latter two
reactions.
Length = 385
Score = 30.2 bits (68), Expect = 1.8
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 280 TFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVA---AEVAACAA 325
T SK G+ G GY A +IEYL +P+ S A A VAA AA
Sbjct: 230 TLSKAIGVVG---GYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAA 275
>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General
function prediction only].
Length = 158
Score = 29.2 bits (66), Expect = 1.9
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 15/62 (24%)
Query: 61 LTGDSFIRSHLRKLKPYQPILPFEV----LSIQLGRKPED---IVKIDANENPYGPPPEV 113
LT D +K K I P+EV L L D IV ID +PYGP E
Sbjct: 39 LTSDEL----AKKKKKE-KIEPYEVRLRNLRNFLESIKADYEEIVPID---DPYGPTVED 90
Query: 114 RE 115
+
Sbjct: 91 PD 92
>gnl|CDD|224424 COG1507, COG1507, Uncharacterized conserved protein [Function
unknown].
Length = 167
Score = 29.0 bits (65), Expect = 2.0
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 84 EVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLK----FPYIY--PDPESRRLRAA 137
+ + QLGR P ++KI PYG P V+ A +L FP +Y P L A
Sbjct: 8 KAVGRQLGRAPRGVLKIAYRC-PYGEPGVVKTA-PKLDDGTPFPTLYYLTHPV---LTKA 62
Query: 138 LAKDSGLES 146
++ LES
Sbjct: 63 ASR---LES 68
>gnl|CDD|188032 TIGR00195, exoDNase_III, exodeoxyribonuclease III. The model
brings in reverse transcriptases at scores below 50,
model also contains eukaryotic apurinic/apyrimidinic
endonucleases which group in the same family [DNA
metabolism, DNA replication, recombination, and repair].
Length = 254
Score = 29.7 bits (67), Expect = 2.1
Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 21/99 (21%)
Query: 96 DIVKIDANENPYGPPPEVREALGQL-------KFPYIYPDPE-----SRRLRAALAKDSG 143
D+ D N N G PE RE L +L F PD R + A ++ G
Sbjct: 155 DLHIPDENRNHTGFLPEEREWLDRLLEAGLVDTFRKFNPDEGAYSWWDYRTK-ARDRNRG 213
Query: 144 LESDHILV-----GCGADELIDLIMRCVLDPGDKIVDCP 177
D+ LV D ID +R + P D CP
Sbjct: 214 WRIDYFLVSEPLKERCVDCGIDYDIRGMEKPSDH---CP 249
>gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic.
This model represents cystathionine beta-lyase
(alternate name: beta-cystathionase), one of several
pyridoxal-dependent enzymes of cysteine, methionine, and
homocysteine metabolism. This enzyme is involved in the
biosynthesis of Met from Cys.
Length = 378
Score = 29.8 bits (67), Expect = 2.2
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 20/115 (17%)
Query: 159 IDLIMRCVLDPGDKIVDCPPTF----TMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAV 214
+D+I R +L+ GD+I+ + + +G VV V +D +
Sbjct: 75 LDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVD-TTDLDKVKAALGPKT 132
Query: 215 EREKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLDEAYTEFSGLESR 265
K + L SP NP I+ D+ KI EM LVV+D T S L
Sbjct: 133 -----KLVLLESPTNPLQKIV---DIRKISEMAHAQNALVVVDN--TMMSPLLCN 177
>gnl|CDD|166635 PLN02994, PLN02994, 1-aminocyclopropane-1-carboxylate synthase.
Length = 153
Score = 28.4 bits (63), Expect = 3.0
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 12/119 (10%)
Query: 74 LKPYQPIL-PFEVLSIQLGRKP--EDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPE 130
L P+ + P ++ + L D+++ ENP+ + K ++ D
Sbjct: 33 LNPFDLLHNPQGIIQMGLAENQLCSDLIEEWIEENPHADICTAEGTIDSFKDIALFQDYH 92
Query: 131 S-RRLRAALA--------KDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTF 180
R A+A ++D I++ GA ++IM C+ DPGD + P +
Sbjct: 93 GLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYY 151
>gnl|CDD|218046 pfam04366, DUF500, Family of unknown function (DUF500). Proteins
in this family often also contain an SH3 domain
(pfam00018), or a FYVE zinc finger (pfam01363).
Length = 125
Score = 28.3 bits (64), Expect = 3.0
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 101 DANENPYGPPPEVREAL-GQLKFPYIYPDPESRRLRAALAK 140
DAN YG R+ L G + P P +R L ALAK
Sbjct: 89 DANRAFYGRGVTARDILAGSVPPP-----PAARPLMEALAK 124
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 29.4 bits (67), Expect = 3.2
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 183 YEFDAAV--------NGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSP 227
FDA+ NG +V + + + L+ + +A + + ++LT+
Sbjct: 176 LSFDASTFEIWGALLNGGRLVLIDK--ETLLDPDRLARLIAEQGVTVLWLTAA 226
>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like
domain. DDI1_N DDI1 (DNA damage inducible protein 1)
has an amino-terminal ubiquitin-like domain, an
retroviral protease-like (RVP-like) domain, and a UBA
(ubiquitin-associated) domain. This CD represents the
amino-terminal ubiquitin-like domain of DDI1.
Length = 71
Score = 26.6 bits (59), Expect = 4.8
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 127 PDPESRRLRAALAKDSGLESDHILVGCGADELID---LIMRCVLDPGDKIV 174
PD E +A +SG+ + + EL+D L+ + GD +V
Sbjct: 18 PDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVV 68
>gnl|CDD|223842 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell
envelope biogenesis, outer membrane].
Length = 448
Score = 28.4 bits (64), Expect = 5.2
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 240 LLKILEMPILVVLDEAYTEFSGLESRMEWVKKHDNL 275
L + L +P + EA + F+GL R+E+V + D +
Sbjct: 287 LARALGVP-PEAILEALSSFTGLPHRLEFVGEKDGV 321
>gnl|CDD|225516 COG2968, COG2968, Uncharacterized conserved protein [Function
unknown].
Length = 243
Score = 28.1 bits (63), Expect = 5.8
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 90 LGRKPEDIVKIDANENPYGPPPEVREA 116
LG K ++ I N + P P R A
Sbjct: 185 LGVKLGRVISISENSSNPQPMPIARAA 211
>gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional.
Length = 657
Score = 28.4 bits (64), Expect = 5.9
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 30/95 (31%)
Query: 110 PPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDP 169
P V L RRLR A+A G+ + VLD
Sbjct: 280 PGFVAAPLLA-------ALGPVRRLRNAVATQLGIPPE------------------VLD- 313
Query: 170 GDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFS 204
V+ P TF E AA+ G+ ++VPR + ++
Sbjct: 314 ---FVNYPTTFDSRETRAALKGSG-IEVPRLASYA 344
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8). HDAC8 is a
Zn-dependent class I histone deacetylase that catalyzes
hydrolysis of an N(6)-acetyl-lysine residue of a histone
to yield a deacetylated histone (EC 3.5.1.98). Histone
acetylation/deacetylation process is important for
mediation of transcriptional regulation of many genes.
Histone deacetylases usually act via association with
DNA binding proteins to target specific chromatin
regions. HDAC8 is found in human cytoskeleton-bound
protein fraction and insoluble cell pellets. It plays a
crucial role in intramembraneous bone formation;
germline deletion of HDAC8 is detrimental to skull bone
formation. HDAC8 is possibly associated with the smooth
muscle actin cytockeleton and may regulate the
contractive capacity of smooth muscle cells. HDAC8 is
also involved in the metabolic control of the estrogen
receptor related receptor (ERR)-alpha/peroxisome
proliferator activated receptor (PPAR) gamma coactivator
1 alpha (PGC1-alpha) transcriptional complex as well as
in the development of neuroblastoma and T-cell lymphoma.
HDAC8-selective small-molecule inhibitors could be a
therapeutic drug option for these diseases.
Length = 364
Score = 28.1 bits (63), Expect = 6.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 175 DCPPTFTMYEFDAAVNGAAV 194
DCP +Y++ AAV GA +
Sbjct: 88 DCPIFEGIYDYAAAVAGATL 107
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 28.4 bits (64), Expect = 6.6
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 235 INDEDLLKILEMPILVVL----DEAYTEFSGLESRMEWVKKH-DNLI 276
+ ++D++++ E+ I + D+A + LE+ + VK H +L
Sbjct: 406 VTEDDIVRLTEIKIKRISKFDSDKADELIARLEAEIAEVKHHLAHLT 452
>gnl|CDD|220887 pfam10844, DUF2577, Protein of unknown function (DUF2577). This
family of proteins has no known function.
Length = 101
Score = 26.8 bits (60), Expect = 6.8
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 208 ELIADAVEREKPKCIFL---TSPNNP-----DGSIINDEDLLKILEM 246
+L AVE P I + S +P D +I D+D L I E+
Sbjct: 5 KLAEGAVEASNPVDIVIGEVVSV-SPLKIKIDQKLILDKDFLIITEL 50
>gnl|CDD|185177 PRK15274, PRK15274, putative periplasmic fimbrial chaperone
protein SteC; Provisional.
Length = 257
Score = 27.8 bits (61), Expect = 6.8
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 14 LLKSNFSSHPFVVPNRTVCPFQGNQRRVIAM----SSTLPVEQQVNEGQRRLTGDSFIRS 69
LL + SH +VP+RT F GN+ + ++TLP Q L D F +
Sbjct: 17 LLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQA-----WLEDDKFAKD 71
Query: 70 --HLRKLKPYQPILP 82
+ L P Q I P
Sbjct: 72 TRYFTALPPLQRIEP 86
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 27.9 bits (63), Expect = 6.9
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 22/134 (16%)
Query: 208 ELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLDEA-----YTE 258
+L+ +A K I + DG I L +++++ ++ +DEA Y
Sbjct: 122 KLLREARRPYGKKLIVTEGVYSMDGDIA---PLPELVDLAKKYGAILFVDEAHSVGVYGP 178
Query: 259 F-SGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVA 317
G+E D I++ T K G G GY A +I+YL + + S +
Sbjct: 179 HGRGVEEF--GGLTDDVDIIMGTLGKAFGAVG---GYIAGSKELIDYLRSYARGFIFSTS 233
Query: 318 ---AEVAAC-AALQ 327
A AA AAL+
Sbjct: 234 LPPAVAAAALAALE 247
>gnl|CDD|201596 pfam01099, Uteroglobin, Uteroglobin family. Uteroglobin is a
homodimer of two identical 70 amino acid polypeptides
linked by two disulphide bridges. The precise role of
uteroglobin has still to be elucidated.
Length = 67
Score = 25.7 bits (57), Expect = 7.4
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 106 PYGPPPEVREALGQLK 121
Y PE EA +LK
Sbjct: 25 KYNADPEAVEAKMELK 40
>gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional.
Length = 404
Score = 28.0 bits (63), Expect = 8.1
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 204 SLNVELIADAVEREKPKCIFL--TSPNNPDGSIINDEDLLKILEM----PILVVLDEAYT 257
L+ + + + + + L +NP G +E +I ++ ++ D AY
Sbjct: 160 GLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQ 219
Query: 258 EF-SG-LE-----SRMEWVKKHDNLIVLRTFSKRAGLAGLRVG 293
F SG L+ R+ + ++ +V ++FSK GL G R+G
Sbjct: 220 GFASGDLDKDAYAIRL-FAERGVEFLVAQSFSKNMGLYGERIG 261
>gnl|CDD|239357 cd03059, GST_N_SspA, GST_N family, Stringent starvation protein A
(SspA) subfamily; SspA is a RNA polymerase
(RNAP)-associated protein required for the lytic
development of phage P1 and for stationary phase-induced
acid tolerance of E. coli. It is implicated in survival
during nutrient starvation. SspA adopts the GST fold
with an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, but it does not bind glutathione
(GSH) and lacks GST activity. SspA is highly conserved
among gram-negative bacteria. Related proteins found in
Neisseria (called RegF), Francisella and Vibrio regulate
the expression of virulence factors necessary for
pathogenesis.
Length = 73
Score = 25.8 bits (57), Expect = 8.2
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
+ SH ++ + + E++ + PED+ ++ NPYG P
Sbjct: 10 VYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAEL----NPYGTVP 50
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 28.1 bits (63), Expect = 9.0
Identities = 30/124 (24%), Positives = 43/124 (34%), Gaps = 27/124 (21%)
Query: 33 PFQGNQRRVIAMSSTLPVEQQVNEGQRRL----TGDSFIRSHLRKLKPYQPILPFEVLSI 88
F+G + V+ LP V RRL TG R+ L + EVLS
Sbjct: 509 TFRGEEAEVL-----LPPTSSVELAARRLEELPTGG---RTPL----AAGLLKAAEVLSN 556
Query: 89 QLGRKPEDIVKI-----------DANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAA 137
+L R + + D E P + L ++ D ES +R
Sbjct: 557 ELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESGFVRLG 616
Query: 138 LAKD 141
LA+D
Sbjct: 617 LAED 620
>gnl|CDD|234543 TIGR04324, SpoChoClust_2, sporadic carbohydrate cluster 2OG-Fe(II)
oxygenase. This family, related to streptomycin
biosynthesis protein StrG and to phytanoyl-CoA
dioxygenase, belongs to the 2-oxoglutarate and
Fe(II)-dependent oxygenase superfamily, which includes
not just dioxygenases, but also some chlorinating
enzymes involved in natural product biosynthesis. Most
members of this family are adjacent to a member of
TIGR04323, and occur in a larger carbohydrate
biosynthesis cluster found sporadically in genera
Bradyrhizobium, Leptospira, Magnetospirillum,
Oscillatoria, Prochlorococcus, etc.
Length = 248
Score = 27.3 bits (61), Expect = 9.9
Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 14/76 (18%)
Query: 173 IVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLT------- 225
+V+ T +MY + ++ + ++ + + D ++ K K ++
Sbjct: 132 LVNVYKTKSMYILNPEISKEMLSRMKKLKCIG-----MEDLFKKYKKKAHWIEINYGEAL 186
Query: 226 --SPNNPDGSIINDED 239
SP G+++N+ED
Sbjct: 187 LFSPTLLHGNVVNEED 202
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.406
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,625,895
Number of extensions: 1771547
Number of successful extensions: 2012
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1795
Number of HSP's successfully gapped: 146
Length of query: 334
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 237
Effective length of database: 6,635,264
Effective search space: 1572557568
Effective search space used: 1572557568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)