RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019868
(334 letters)
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 344 bits (885), Expect = e-118
Identities = 90/273 (32%), Positives = 138/273 (50%), Gaps = 9/273 (3%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI 125
+ L L Y+P E + +LG I K+ +NENP G +V I
Sbjct: 6 WKKSLAGLSSYKPGKREEEVMAELGLT--KITKLSSNENPLGTSKKVAAIQANSSVETEI 63
Query: 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
YPD + LR +A LE + ++ G DELI+L+ R +LD V PTF Y
Sbjct: 64 YPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQ 123
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE 245
+A + GA V ++P D ++E + +A+ EK +++ +PNNP G+ I D+ L+
Sbjct: 124 NALIEGAEVREIPLLQDGEHDLEGMLNAI-DEKTTIVWICNPNNPTGNYIELADIQAFLD 182
Query: 246 -MP--ILVVLDEAYTEFSGLE--SRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLS 300
+P +LVVLDEAY E+ + + V+ + NLI+ RTFSK GLA RVGYG
Sbjct: 183 RVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKE 242
Query: 301 IIEYLWRAKQPYNVSVAAEVAACAALQNPIYLE 333
II L + P+N + + A A+++ ++
Sbjct: 243 IIRQLNIVRPPFNTTSIGQKLAIEAIKDQAFIG 275
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural
genomics, joint center for structural genomics; HET: LLP
MSE; 2.01A {Campylobacter jejuni subsp}
Length = 365
Score = 337 bits (867), Expect = e-115
Identities = 86/277 (31%), Positives = 147/277 (53%), Gaps = 13/277 (4%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI 125
L L Y+P EV++ + G K +++K+ +NENP+G PP+ E L Q ++
Sbjct: 4 FNEFLNNLSNYEPGKDIEVIAKEYGVK--EVIKLASNENPFGTPPKAIECLRQNANKAHL 61
Query: 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
YPD L++ LA+ +++++I++G G+D++I+ + L+ + + TF MYE
Sbjct: 62 YPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEI 121
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE 245
A GA K + + + + +++ K IFL PNNP G ++ + + ++
Sbjct: 122 YAKQCGAKCYKTQSITHNLDEFKKLYETH-KDEIKLIFLCLPNNPLGECLDASEATEFIK 180
Query: 246 -MP--ILVVLDEAYTEFSGLE------SRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGA 296
+ LVV+D AY EF+ + E +K+ DN++ L TFSK GL GLR+GYG
Sbjct: 181 GVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGI 240
Query: 297 FPLSIIEYLWRAKQPYNVSVAAEVAACAALQNPIYLE 333
+II ++ + P+NVS A AA AA+ + + E
Sbjct: 241 ANANIISAFYKLRAPFNVSNLALKAAVAAMDDDEFTE 277
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine
biosynthesis, pyridoxal PH montreal-kingston bacterial
structural genomics initiative; HET: PMP; 1.50A
{Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A*
1gex_A* 1gey_A* 1iji_A*
Length = 356
Score = 331 bits (850), Expect = e-113
Identities = 84/277 (30%), Positives = 135/277 (48%), Gaps = 24/277 (8%)
Query: 64 DSFIRSHLRKLKPYQPILPFEVLSIQLGRKP--EDIVKIDANENPYGPPPEVREALGQLK 121
R ++R L PYQ R+ V ++ANE P ++ +
Sbjct: 7 TDLARENVRNLTPYQS-----------ARRLGGNGDVWLNANEYPTAVEFQLTQQTLN-- 53
Query: 122 FPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTF 180
YP+ + + + A+ +G++ + +LV GADE I+L++R +PG D I+ CPPT+
Sbjct: 54 ---RYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTY 110
Query: 181 TMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDL 240
MY A G VP ++ L+++ I+D ++ K +++ SPNNP G +IN +D
Sbjct: 111 GMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDF 168
Query: 241 LKILEM---PILVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAF 297
+LE+ +VV DEAY EF S W+ ++ +L +LRT SK LAGLR G+
Sbjct: 169 RTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLA 228
Query: 298 PLSIIEYLWRAKQPYNVSVAAEVAACAALQNPIYLEV 334
+I L + PY +S A AL + +
Sbjct: 229 NEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAM 265
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.05A {Ralstonia eutropha JMP134}
Length = 367
Score = 331 bits (851), Expect = e-113
Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 24/280 (8%)
Query: 64 DSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQL--K 121
+ IR +R + Y +VK+DA ENPY PP +R L +
Sbjct: 11 ERIIRDDVRAMGAYHV------------PDSHGLVKLDAMENPYRLPPALRSELAARLGE 58
Query: 122 FPY-IYPDPESRRLRAALAKDSGLESD-HILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179
YP P S LRA L + + + +L+G G+DE+I ++ PG K++ P
Sbjct: 59 VALNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPG 118
Query: 180 FTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDED 239
F MY A G V VP ++DF+L+ + A+ +P ++L PNNP G++ + D
Sbjct: 119 FVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAAD 178
Query: 240 LLKILE------MPILVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVG 293
+ I+ LVV+DEAY F+ ES M + NL+V+RT SK GLAG+R+G
Sbjct: 179 MEAIVRAAQGSVCRSLVVVDEAYQPFAQ-ESWMSRLTDFGNLLVMRTVSKL-GLAGIRLG 236
Query: 294 YGAFPLSIIEYLWRAKQPYNVSVAAEVAACAALQNPIYLE 333
Y A +E L + + PYNV+V E A AL++ L+
Sbjct: 237 YVAGDPQWLEQLDKVRPPYNVNVLTEATALFALEHVAVLD 276
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 315 bits (809), Expect = e-106
Identities = 70/283 (24%), Positives = 133/283 (46%), Gaps = 25/283 (8%)
Query: 64 DSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ---- 119
D +R LR Y + ++++ NENPY P + L
Sbjct: 11 DLPLREELRGEHAYGA------------PQLNVDIRLNTNENPYPPSEALVADLVATVDK 58
Query: 120 -LKFPYIYPDPESRRLRAALAK------DSGLESDHILVGCGADELIDLIMRCVLDPGDK 172
YP+ ++ LR LA + D++ G++E++ +++ PG
Sbjct: 59 IATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRT 118
Query: 173 IVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+ P+++M+ A + V R +DF +++++ + + ++P +F+T+PNNP G
Sbjct: 119 ALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTG 178
Query: 233 SIINDEDLLKILE-MPILVVLDEAYTEFSGLESRMEWVKKH-DNLIVLRTFSKRAGLAGL 290
+ + +D+ +I+ P +V++DEAY EFS S ++K+ L+V RT SK AG
Sbjct: 179 DVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGG 238
Query: 291 RVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAALQNPIYLE 333
R+GY + I+ + + PY++S ++ AA AL++
Sbjct: 239 RLGYFVANPAFIDAVMLVRLPYHLSALSQAAAIVALRHSADTL 281
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis,
pyridoxal phosphate, complete proteome; HET: PMP HSA;
2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A
1h1c_A* 1uu2_A* 2f8j_A*
Length = 335
Score = 308 bits (791), Expect = e-104
Identities = 80/275 (29%), Positives = 129/275 (46%), Gaps = 30/275 (10%)
Query: 65 SFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPY 124
+ + ++ PY+ + D + NENP+ P ++ + + +
Sbjct: 2 NPLDLIAKRAYPYET-------------EKRDKTYLALNENPFPFPEDLVDEVFRRLNSD 48
Query: 125 ---IYPDPESRRLRAALAK---DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
IY D L + L +++ VG GADE+I ++M D+ V PP
Sbjct: 49 ALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLM----FDRSVFFPP 104
Query: 179 TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDE 238
T++ Y A GA ++VP D + V + +F+ +PNNP G + E
Sbjct: 105 TYSCYRIFAKAVGAKFLEVPLTKDLRI------PEVNVGEGDVVFIPNPNNPTGHVFERE 158
Query: 239 DLLKILEMPILVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFP 298
++ +IL+ V LDEAY EF G ES ++++KK++NL V+RTFSK LA RVGY
Sbjct: 159 EIERILKTGAFVALDEAYYEFHG-ESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS 217
Query: 299 LSIIEYLWRAKQPYNVSVAAEVAACAALQNPIYLE 333
I+ R + P+NVS +++ A AL + E
Sbjct: 218 EKFIDAYNRVRLPFNVSYVSQMFAKVALDHREIFE 252
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate
aminotrans structural genomics, protein structure
initiative; 1.61A {Geobacter metallireducens gs-15}
Length = 360
Score = 309 bits (793), Expect = e-104
Identities = 84/276 (30%), Positives = 137/276 (49%), Gaps = 26/276 (9%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPED---IVKIDANENPYGPPPEVREALGQLKFP 123
+R ++ +K Y P G +P D +K++ NENPY P PEV +A+ + P
Sbjct: 6 LRQNIASMKGYIP-----------GYQPPDIASWIKLNTNENPYPPSPEVVKAILEELGP 54
Query: 124 Y-----IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
IYP S++LR + G + I++ G+DE+++ ++R G++I P
Sbjct: 55 DGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHP 114
Query: 179 TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDE 238
+++ Y A V GA V DF + R + K FLT+PN P G E
Sbjct: 115 SYSYYGTLAEVQGARVRTFGLTGDFRIAGFPE-----RYEGKVFFLTTPNAPLGPSFPLE 169
Query: 239 DLLKILE-MPILVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAF 297
+ ++ ++VLDE Y EF+ + +E V++H+N++V RT SK LAG+R+G
Sbjct: 170 YIDELARRCAGMLVLDETYAEFAE-SNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIA 228
Query: 298 PLSIIEYLWRAKQPYNVSVAAEVAACAALQNPIYLE 333
+I L + + YN+ A+ A AAL++ YL
Sbjct: 229 RPEVIAALDKIRDHYNLDRLAQAACVAALRDQAYLS 264
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 307 bits (789), Expect = e-103
Identities = 67/251 (26%), Positives = 126/251 (50%), Gaps = 14/251 (5%)
Query: 91 GRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHI 149
K +++ +N NP G P + + +K +YPD RRL ++ L+ I
Sbjct: 22 VFKGRELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDVNYRRLNKSIENYLKLKDIGI 81
Query: 150 LVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVEL 209
++G GA E+I+L + +KI+ P++ YE +A +G +VV + ++ E
Sbjct: 82 VLGNGASEIIELSISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYED 137
Query: 210 IADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAYTEFSGLE-- 263
I + + + + +PNNP+G +IN E + +L++ +++DEA+ EF+G
Sbjct: 138 IISKI--DDVDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSS 195
Query: 264 SRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYG-AFPLSIIEYLWRAKQPYNVSVAAEVAA 322
S + +K + L ++R +K + G+R GYG I + + P+N++ AE+AA
Sbjct: 196 SFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNPWNINCFAEMAA 255
Query: 323 CAALQNPIYLE 333
L++ Y+E
Sbjct: 256 INCLKDTNYIE 266
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent
decarboxylase cobalamin, lyase; 1.46A {Salmonella
enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Length = 364
Score = 301 bits (774), Expect = e-101
Identities = 70/269 (26%), Positives = 120/269 (44%), Gaps = 11/269 (4%)
Query: 73 KLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREAL-GQLKFPYIYPDPES 131
L + LG P+ ++ AN NP G P V+ AL L YPD +
Sbjct: 2 ALFNTAHGGNIREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNLDCIERYPDADY 61
Query: 132 RRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNG 191
L ALA+ + + IL G G E I + + + + P F Y A +G
Sbjct: 62 FHLHQALARHHQVPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQSG 119
Query: 192 AAVVKVP-RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE----M 246
+ + R++D + I +A+ C+FL +PNNP G + L I + +
Sbjct: 120 CEIRRWSLREADGWQLTDAILEALT-PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSL 178
Query: 247 PILVVLDEAYTEFS-GLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYG-AFPLSIIEY 304
I ++LDEA+ +F + +K + ++ VLR+ +K + GLR+GY + +
Sbjct: 179 NINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMAR 238
Query: 305 LWRAKQPYNVSVAAEVAACAALQNPIYLE 333
+ R + P++V+ A +A ALQ+ + +
Sbjct: 239 MRRQQMPWSVNALAALAGEVALQDSAWQQ 267
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent
transferase-like, structural genomics, joint C
structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia
pseudomallei}
Length = 337
Score = 297 bits (763), Expect = e-100
Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 8/254 (3%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALA 139
+ R V + NENP P V+ A+ YP R+ LA
Sbjct: 2 MSVGEAMDTEVRAAAQAVCLAFNENPEAVEPRVQAAIAAAAARINRYPFDAEPRVMRKLA 61
Query: 140 KDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR 199
+ D++++ G DE D I + V P F Y AV+G ++
Sbjct: 62 EHFSCPEDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGL 119
Query: 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMPILVVLDEAYTEF 259
D L+ +A + C+ L +P+NP G ++ +L ++ + +++DE Y ++
Sbjct: 120 TDDLLLDPNDLAQV---SRDDCVVLANPSNPTGQALSAGELDQLRQRAGKLLIDETYVDY 176
Query: 260 SGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAE 319
S +R + +N +V R+FSK GLAGLR+G P +I + R + NV
Sbjct: 177 SSFRAR--GLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQWFCNVGTLDL 234
Query: 320 VAACAALQNPIYLE 333
A AAL N E
Sbjct: 235 HALEAALDNDRARE 248
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, ,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Porphyromonas gingivalis}
Length = 350
Score = 295 bits (757), Expect = 5e-99
Identities = 60/248 (24%), Positives = 103/248 (41%), Gaps = 14/248 (5%)
Query: 90 LGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDH 148
+ +IV G + + L + L YP+P++ LR LAK + ++++
Sbjct: 10 ITPLSSEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEPDAGTLRQMLAKRNSVDNNA 69
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208
ILV G I + G + + P+F YE + V P D
Sbjct: 70 ILVTNGPTAAFYQIAQAF--RGSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDI----- 122
Query: 209 LIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM--PILVVLDEAYTEFSGLE-SR 265
+ +L +PNNPDG ++ ++L++L VLD++Y F+ E R
Sbjct: 123 ---GEADFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIR 179
Query: 266 MEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAA 325
+K NL+++ +FS G+ GLR+GY ++ + P+ V+ A AA
Sbjct: 180 PADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFSTPWAVNALAIEAAKFI 239
Query: 326 LQNPIYLE 333
L +P
Sbjct: 240 LIHPAQFT 247
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint
center for structural genomics, JCSG; HET: MSE PLP CIT;
1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 277 bits (712), Expect = 3e-92
Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 11/264 (4%)
Query: 79 PILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAA 137
P ++ ++I+ NENP G P+ + A + Y E L
Sbjct: 2 ETQPESAAFTAPS--TDNPIRINFNENPLGMSPKAQAAARDAVVKANRYAKNEILMLGNK 59
Query: 138 LAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKV 197
LA +E+ IL+ G+ E I + ++V T+ E A + G V KV
Sbjct: 60 LAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKV 119
Query: 198 PRKSDFSLNVELIADAV-EREKPKCIFLTSPNNPDGSIINDEDLLKILE-MP--ILVVLD 253
+++ ++E + AV P ++L +PNNP G+I + + + P + ++D
Sbjct: 120 KMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVD 179
Query: 254 EAYTEF---SGLESRMEWV-KKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAK 309
EAY EF S + + +N+I+L+TFSK +AG+RVGY ++I + R
Sbjct: 180 EAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYV 239
Query: 310 QPYNVSVAAEVAACAALQNPIYLE 333
++ + AA A++ + ++
Sbjct: 240 AGEKINFSGVDAALASMNDSAFIT 263
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis,
pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP
PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Length = 391
Score = 172 bits (437), Expect = 9e-51
Identities = 41/212 (19%), Positives = 77/212 (36%), Gaps = 25/212 (11%)
Query: 126 YPDPESRRLRAALAK------DSGLESDHILVGCGADELIDLIMRCVLDPGD----KIVD 175
L A+ ++ E +I+VG G+ +L + + +V
Sbjct: 65 LCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVA 124
Query: 176 CPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSII 235
P ++ Y + + + K E A +++ P +TSPNNPDG+I
Sbjct: 125 AAPFYSTYVEETTYVRSGMYKW----------EGDAWGFDKKGPYIELVTSPNNPDGTI- 173
Query: 236 NDEDLLKILEMPILVVLDEAYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYG 295
+ + + + V+ D AY ++ D+ I+L TFSK G AG R+G+
Sbjct: 174 RETVVNRPDDDEAKVIHDFAYYWPHYTP----ITRRQDHDIMLFTFSKITGHAGSRIGWA 229
Query: 296 AFPLSIIEYLWRAKQPYNVSVAAEVAACAALQ 327
+ N ++ + +
Sbjct: 230 LVKDKEVAKKMVEYIIVNSIGVSKESQVRTAK 261
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 131 bits (333), Expect = 1e-35
Identities = 48/236 (20%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 110 PPEVREAL------GQLKFPYIYPDPESRRLRAALA-KDSGLESDHILVGCGADELIDLI 162
E +L + +I P + +++ +G++ + IL GA L+
Sbjct: 41 SGTNPEDFYKKLQGTKLNYGWIEGSPA---FKKSVSQLYTGVKPEQILQTNGATGANLLV 97
Query: 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPK 220
+ +++PGD ++ PT+ GA V ++ + ++E + + R K
Sbjct: 98 LYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLI-RPTTK 156
Query: 221 CIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAYTEFSGLESRMEWVKKHDNLI 276
I + + NNP G++++ L +++E+ ++ DE Y FS ++ +D I
Sbjct: 157 MICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSE-LDVPSIIEVYDKGI 215
Query: 277 VLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPY---NVSVAAEVAACAALQNP 329
+ + SK L G+R+G+ A + + L + Y V ++ A AL +
Sbjct: 216 AVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRD-YTMICAGVFDDLVAQLALAHY 270
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 110 bits (278), Expect = 7e-28
Identities = 49/242 (20%), Positives = 90/242 (37%), Gaps = 23/242 (9%)
Query: 109 PPPEVREALGQ-LKFP--YIYPDPE-SRRLRAALA----KDSGLESD---HILVGCGADE 157
PP +AL + L P Y Y + A G+ D L G+ E
Sbjct: 39 PPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98
Query: 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE 217
+ ++ + +P D ++ + Y A V +P + D +++ + + V
Sbjct: 99 GLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGV-WR 157
Query: 218 KPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAYTEFSGLE----SRMEWV 269
+ K + L PNNP G++ + + L + + ++ D Y + E S +
Sbjct: 158 EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQ-VYEGEAPSPLALP 216
Query: 270 KKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQP--YNVSVAAEVAACAALQ 327
+ ++ L + SK LAG R+G+ + L R K +N AL+
Sbjct: 217 GAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALK 276
Query: 328 NP 329
P
Sbjct: 277 TP 278
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 110 bits (277), Expect = 1e-27
Identities = 61/311 (19%), Positives = 112/311 (36%), Gaps = 35/311 (11%)
Query: 44 MSSTLPVEQQVNEGQRRLTGDSFIRSHLRKLKPYQPILPF-EVLSIQLGRKPEDIVKID- 101
M S+ + R G I + L + F + + ++ P + I+
Sbjct: 1 MGSSHHHHHHSSGLVPR--GSHMISNKLANIPDS----YFGKTMGRKIEHGPLPL--INM 52
Query: 102 ANENP-YGPPPEVREALGQ-LKFP--YIYPDPE-SRRLRAALA----KDSGLESD---HI 149
A P P + + + L P Y + A+ + + D +
Sbjct: 53 AVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEV 112
Query: 150 LVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP-RKSDFSLNVE 208
+ G + + CV++PGD ++ P +T Y + V + + +
Sbjct: 113 CILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWS 172
Query: 209 LIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAYTEFSGLE- 263
+ + +K K I+LT PNNP GS E + + +V D AY F G +
Sbjct: 173 KVDSQI-IDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAF-GFDA 230
Query: 264 ---SRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQP--YNVSVAA 318
S + D I + + SK ++G RVG+ +I+ L + + + A
Sbjct: 231 KNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGAL 290
Query: 319 EVAACAALQNP 329
+ AA AL +
Sbjct: 291 QDAAIYALNHY 301
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 107 bits (269), Expect = 2e-26
Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 25/241 (10%)
Query: 107 YGPPPEVREALGQ-LKFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164
PPP + EA+ + L Y P LR ALA++ +E + ++V GA E + ++++
Sbjct: 37 NPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQ 96
Query: 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP---RKSDFSLNVELIADAVEREKPKC 221
++ PGD++V P F +Y DA + GA V F L++ + A+ + +
Sbjct: 97 SLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKAL-TPRTRA 155
Query: 222 IFLTSPNNPDGSIINDEDLLKI----LEMPILVVLDEAYTE--FSGLE----SRMEWVKK 271
+ L +P NP G + + +L I + ++ DE Y E +
Sbjct: 156 LLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAP---- 211
Query: 272 HDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVA---AEVAACAALQN 328
+ + + KR G RVG+ P + L +Q + A + AL+
Sbjct: 212 -ERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQ-WTSFSAPTPLQAGVAEALKL 269
Query: 329 P 329
Sbjct: 270 A 270
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.90A {Silicibacter pomeroyi dss-3}
Length = 391
Score = 107 bits (269), Expect = 2e-26
Identities = 56/290 (19%), Positives = 98/290 (33%), Gaps = 54/290 (18%)
Query: 80 ILPFEVLSI-----QLGRKPEDIVKIDANENPYGPPPEVREAL------GQLKFPYIYPD 128
+ PF V+ + + I+ ++ + G P EAL L Y
Sbjct: 11 VDPFIVMDVMEAARRAEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALG----YTV 66
Query: 129 ----PESRRLRAALA----KDSGLE--SDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
P LR +A + G++ +++ G+ L + D GD++ P
Sbjct: 67 ALGLPA---LRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAP 123
Query: 179 TFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIIN 236
+ Y G V +P ++ + + SP NP G++++
Sbjct: 124 GYPSYRQILRALGLVPVDLPTAPENRLQPVPA----DFAGLDLAGLMVASPANPTGTMLD 179
Query: 237 DEDLLKI----LEMPILVVLDEAY-------TEFSGLESRMEWVKKHDNLIVLRTFSKRA 285
+ + + DE Y + LE D V+ +FSK
Sbjct: 180 HAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELT-------DECYVINSFSKYF 232
Query: 286 GLAGLRVGYGAFPLSIIEYLWRAKQPY--NVSVAAEVAACAALQNPIYLE 333
+ G RVG+ P + + R Q A++VAA AAL L+
Sbjct: 233 SMTGWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQ 282
>3nra_A Aspartate aminotransferase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Length = 407
Score = 107 bits (269), Expect = 2e-26
Identities = 37/224 (16%), Positives = 77/224 (34%), Gaps = 33/224 (14%)
Query: 134 LRAALA----KDSGLE---SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD 186
+R LA +G D +++ G + L + + GDK+ P +
Sbjct: 83 IRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKL 142
Query: 187 AAVNGAAVVKVPRKS------DFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDL 240
+V V L++ + +A + + ++PNNP G + + E++
Sbjct: 143 VEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF-KAGARVFLFSNPNNPAGVVYSAEEI 201
Query: 241 LKI----LEMPILVVLDEAY-------TEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAG 289
+I V+ D+ Y ++ L + +N++ + SK L+G
Sbjct: 202 GQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDA--ENVVTIMGPSKTESLSG 259
Query: 290 LRVGYGAFPLSIIEYLWRAK-QPY---NVSVAAEVAACAALQNP 329
R+G +II + K Q + ++
Sbjct: 260 YRLGVAFGSRAIIARM--EKLQAIVSLRAAGYSQAVLRGWFDEA 301
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 107 bits (269), Expect = 2e-26
Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 24/244 (9%)
Query: 109 PPPEVREALGQ-LKFP--YIYPDPE-SRRLRAALA----KDSGLESD---HILVGCGADE 157
PP + E L + + Y RLR A++ ++ D +V G+ E
Sbjct: 51 TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110
Query: 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVE 215
+ +M LD GD I+ P++ ++ + A + GA V VP DF +E
Sbjct: 111 GLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRES- 169
Query: 216 REKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAYTE--FSGLE--SRME 267
KP+ + L P+NP + + +++ + ++VV D AY + + G + S M+
Sbjct: 170 IPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQ 229
Query: 268 WVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQP--YNVSVAAEVAACAA 325
D + T SK +AG R+G+ ++ L R K Y +VAA AA
Sbjct: 230 VPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAA 289
Query: 326 LQNP 329
L+
Sbjct: 290 LEGD 293
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 107 bits (268), Expect = 2e-26
Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 35/221 (15%)
Query: 126 YPDPESRRLRAALAKDSGL---ESDHILVGCGADELIDLIMR--------CVLDPGDKIV 174
+ E + L + G + +I+ G G +LI ++ P K+V
Sbjct: 100 FISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVV 159
Query: 175 DCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSI 234
P + ++ ++ N + + +TSPNNP+G +
Sbjct: 160 AHAPFYPVFREQTKYFDKKGYV------WAGNAANYVNVS-NPEQYIEMVTSPNNPEGLL 212
Query: 235 INDEDLLKILEMPILVVLDEAY--TEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRV 292
++K + D Y ++ ++ K D I+L T SK G +G R
Sbjct: 213 --RHAVIKG----CKSIYDMVYYWPHYTPIKY------KADEDILLFTMSKFTGHSGSRF 260
Query: 293 GYGAF-PLSIIEYLWRAKQ--PYNVSVAAEVAACAALQNPI 330
G+ S+ L ++ + L+ +
Sbjct: 261 GWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVV 301
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 107 bits (268), Expect = 4e-26
Identities = 38/265 (14%), Positives = 79/265 (29%), Gaps = 50/265 (18%)
Query: 94 PEDIVK-----IDANENPYGPP----PEVREALGQLKFPYIYPDPESRRLRAALAKDSGL 144
P+ ++ + P PE+++ SR + +
Sbjct: 59 PQIGIETEIQKLREGVASIYPNLDGLPELKQEA-------------SRFAK----LFVNI 101
Query: 145 E--SDHILVGCGADELIDLIM----RCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP 198
+ + + G+ + + R + + P F + + + G
Sbjct: 102 DIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFD 161
Query: 199 --RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVL 252
L +L + + I ++PNNP + DE+L I E+ ++V+
Sbjct: 162 LFEYRGEKLREKLESYLQT-GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220
Query: 253 DEAYTEFSGLESRMEWVKKH----------DNLIVLRTFSKRAGLAGLRVGYGAFPLSII 302
D AY + DN I+ + SK AG R+G +
Sbjct: 221 DLAYFGMD-FRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLY 279
Query: 303 EYLWRAKQPYNVSVAAEVAACAALQ 327
E + + + A ++
Sbjct: 280 EREYPDLEESFGRLRFGEALSSSAL 304
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature
dependence O substrate recognition; HET: PLP; 1.80A
{Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A*
1dju_A*
Length = 389
Score = 105 bits (264), Expect = 8e-26
Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 24/217 (11%)
Query: 134 LRAA----LAKDSGLE---SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD 186
LR A L K +G+E I+V GA++ + + L G++++ P F Y
Sbjct: 68 LREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPA 127
Query: 187 AAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI- 243
+ G V+VP + +F LNV+ + V +K + + + SP NP G+++ +DL +I
Sbjct: 128 VILAGGKPVEVPTYEEDEFRLNVDELKKYVT-DKTRALIINSPCNPTGAVLTKKDLEEIA 186
Query: 244 ---LEMPILVVLDEAYTE--FSGLE--SRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGA 296
+E ++V+ DE Y + S + I + FSK + G R+G+ A
Sbjct: 187 DFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVA 246
Query: 297 FPLSIIEYLWRAK-QPYNVSVA---AEVAACAALQNP 329
P IIE + K Q YN + + AA AL++
Sbjct: 247 APSWIIERM--VKFQMYNATCPVTFIQYAAAKALKDE 281
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter
pylori 26695}
Length = 376
Score = 104 bits (262), Expect = 1e-25
Identities = 65/285 (22%), Positives = 116/285 (40%), Gaps = 36/285 (12%)
Query: 73 KLKPYQPILPFEVLS--IQLGRKPEDIVKIDANE-NPYGPPPE-VREALGQ-LKFPYIYP 127
+PY PFE L ++ + +D P P+ +++AL IYP
Sbjct: 3 TFEPY----PFERLRALLKEITPKKRG--LDLGIGEPQFETPKFIQDALKNHTHSLNIYP 56
Query: 128 DPE-SRRLRAALAK------DSGLESDHILVGCGADELIDLIMRCVLD--PGDKIVDCPP 178
LRAA L+ + ++ G+ E++ VL I P
Sbjct: 57 KSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNP 116
Query: 179 TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDE 238
+ +YE A A + +P + L + E ++ + L SPNNP G ++ E
Sbjct: 117 FYQIYEGAAKFIKAKSLLMPLTKENDFTPSL--NEKELQEVDLVILNSPNNPTGRTLSLE 174
Query: 239 DLLKILEM----PILVVLDEAYTEF-------SGLESRMEWVKK-HDNLIVLRTFSKRAG 286
+L+ +++ +++ DE Y+E S LE+ M + N++V+ + SKR+
Sbjct: 175 ELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSS 234
Query: 287 LAGLRVGYGAFPLSIIEYLWRAK--QPYNVSVAAEVAACAALQNP 329
GLR G+ A ++E + Y + A + A+ AA +
Sbjct: 235 APGLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDD 279
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 103 bits (259), Expect = 3e-25
Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 25/216 (11%)
Query: 134 LRAALA----KDSGLE--SDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTFTMYEFD 186
RAA+A G +D++ + GA + + R + D+ + P F Y+
Sbjct: 81 TRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVF 140
Query: 187 AAVNGAAVVKVP-RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE 245
GA +V+VP F ++ + + + + + + + SPNNP G++ ++E + K+ +
Sbjct: 141 VNAAGARLVEVPADTEHFQIDFDALEERIN-AHTRGVIINSPNNPSGTVYSEETIKKLSD 199
Query: 246 M----------PILVVLDEAYTE--FSGLE-SRMEWVKKHDNLIVLRTFSKRAGLAGLRV 292
+ PI ++ DE Y E + G++ + DN +V ++SK L G R+
Sbjct: 200 LLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYY--DNTLVCYSYSKSLSLPGERI 257
Query: 293 GYGAFPLSIIEYLWR-AKQPYNVSVAAEVAACAALQ 327
GY P + + A V A + Q
Sbjct: 258 GYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQ 293
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 103 bits (258), Expect = 6e-25
Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 33/246 (13%)
Query: 114 REALGQLKFPYIYPDPE-SRRLRAALAK--------DSGLESDHILVGCGADELIDLIMR 164
E + K + D R A+AK + + +++ GA + I+
Sbjct: 67 SEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIF 126
Query: 165 CVLDPGDKIVDCPPTFTMYEFDAAV-NGAAVVKVPRKS--DFSLNVELIADAVERE---- 217
C+ DPGD + P + + D G ++ + +S +F + + + +A E
Sbjct: 127 CLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSN 186
Query: 218 -KPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAYTE--FSG--------- 261
K K + LT+P+NP G+ ++ + L +L I +V DE Y F
Sbjct: 187 IKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEI 246
Query: 262 LESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYG-AFPLSIIEYLWRAKQPYNVSVAAEV 320
L+ + D + ++ + SK GL G RVG +F ++ + VS +
Sbjct: 247 LDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQY 306
Query: 321 AACAAL 326
A L
Sbjct: 307 FLAAML 312
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 102 bits (257), Expect = 7e-25
Identities = 53/250 (21%), Positives = 101/250 (40%), Gaps = 38/250 (15%)
Query: 109 PPPEVREALGQ--LKFPYIY-PDPESRRLRAALA----KDSGLESD---HILVGCGADEL 158
P ++E L + Y P + LR A+A + G + D I V GA E
Sbjct: 44 GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEA 103
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP-RKSDFSLNVELIADAVERE 217
+ + ++ GD+++ P++ Y A++G V ++ + F ++ + A + E
Sbjct: 104 LYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALL-SE 162
Query: 218 KPKCIFLTSPNNPDGSIINDEDLLKI----LEMPILVVLDEAYTE--FSGLESRMEWVKK 271
+ + + L +P+NP ++ D + I V+ DE Y FS +
Sbjct: 163 RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQ--------QG 214
Query: 272 HDNLIVL-----RT-----FSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ--PYNVSVAAE 319
H +++ R F K + G +VGY P I + + Q ++V+ A+
Sbjct: 215 HASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQ 274
Query: 320 VAACAALQNP 329
+A L+
Sbjct: 275 LALADMLRAE 284
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 101 bits (255), Expect = 2e-24
Identities = 61/254 (24%), Positives = 104/254 (40%), Gaps = 40/254 (15%)
Query: 107 YGPPPEVREALGQ--LKFPYIY-PDPESRRLRAALA----KDSGLESD---HILVGCGAD 156
PP++ +A Y P P S LR A+A + G++ D +LV GA
Sbjct: 37 EDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGAT 96
Query: 157 ELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP---RKSDFSLNVELIADA 213
E I + +++PG +++ P + Y A+ GA V VP F+L+ + + A
Sbjct: 97 EAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRA 156
Query: 214 VEREKPKCIFLTSPNNPDGSIINDEDLLKI----LEMPILVVLDEAYTE--FSGLESRME 267
V + + + + SP+NP G++++ +L I + ++V+ DE Y F
Sbjct: 157 V-TPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDH------ 209
Query: 268 WVKKHDNLIVL-----RT-----FSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ--PYNVS 315
+H L RT +K G ++G+ P +I + AKQ Y
Sbjct: 210 --ARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPAELIAGVRAAKQYLSYVGG 267
Query: 316 VAAEVAACAALQNP 329
+ A AL
Sbjct: 268 APFQPAVALALDTE 281
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 101 bits (255), Expect = 2e-24
Identities = 47/248 (18%), Positives = 97/248 (39%), Gaps = 41/248 (16%)
Query: 110 PPEVREALGQLKFPYI-YPD----PESRRLRAALA----KDSGLE--SDHILVGCGADEL 158
P E + + K + Y E LR A A + ++ +++LV G E
Sbjct: 58 PEVFFERIYENKPEVVYYSHSAGIWE---LREAFASYYKRRQRVDVKPENVLVTNGGSEA 114
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVER 216
I + +PGD+I+ P + Y A + G ++ V + F++ + + +
Sbjct: 115 ILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN- 172
Query: 217 EKPKCIFLTSPNNPDGSIINDEDLLKI----LEMPILVVLDEAYTEFSGLESRMEWVKKH 272
E+ K I L++P NP G + +++ + + +++DE Y+E + +
Sbjct: 173 ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIV-------FRGEF 225
Query: 273 --------DNLIVLRTFSKRAGLAGLRVGY-GAFPLSIIEYLWRAKQPY--NVSVAAEVA 321
D ++V+ + SK+ G RVG +I + + Q + ++
Sbjct: 226 ASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQ-GRLAPPLLEQIG 284
Query: 322 ACAALQNP 329
+ L
Sbjct: 285 SVGLLNLD 292
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 99.9 bits (250), Expect = 5e-24
Identities = 47/215 (21%), Positives = 87/215 (40%), Gaps = 34/215 (15%)
Query: 134 LRAALA----KDSGLE--SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA 187
LR ++ + D+I++ G+ + + ++D GD+++ P + Y+
Sbjct: 71 LREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFI 130
Query: 188 AVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEMP 247
GA V VE + +A+ +K K I + SP+NP G +I+ E E
Sbjct: 131 RFLGAKPVFCD------FTVESLEEAL-SDKTKAIIINSPSNPLGEVIDREIYEFAYENI 183
Query: 248 ILVVLDEAYTEFSGLESRMEWVKKH----------DNLIVLRTFSKRAGLAGLRVGYGAF 297
++ DE Y + + + K + I++ FSK + G R+GY
Sbjct: 184 PYIISDEIY-------NGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVIS 236
Query: 298 PLSIIEYLWRAKQPYNVSVA---AEVAACAALQNP 329
IIE + + +Q A ++ AA A +
Sbjct: 237 NDEIIEAILKLQQ-NLFISAPTISQYAALKAFEKE 270
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 99.3 bits (248), Expect = 2e-23
Identities = 39/203 (19%), Positives = 80/203 (39%), Gaps = 34/203 (16%)
Query: 126 YPDPE-SRRLRAALAK------DSGL--ESDHILVGCGADELIDLIMRCVLDPGDKIVDC 176
+ D + A+ + + + +H+++ GA + + C+ DPG+ ++
Sbjct: 82 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIP 141
Query: 177 PPTFTMYEFDAAV-NGAAVVKVPRKS--DFSLNVELIADAVERE-----KPKCIFLTSPN 228
P + ++ D G +V + S F + + +A + + K + +T+P+
Sbjct: 142 TPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPS 201
Query: 229 NPDGSIINDEDLLKILEM----PILVVLDEAY-------------TEFSGLESRMEWVKK 271
NP G+ + +L +L I ++ DE Y E + E +
Sbjct: 202 NPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEV 261
Query: 272 HDNLIVLRTFSKRAGLAGLRVGY 294
+ V+ + SK GL G RVG
Sbjct: 262 WQRVHVVYSLSKDLGLPGFRVGA 284
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 96.1 bits (240), Expect = 1e-22
Identities = 66/297 (22%), Positives = 124/297 (41%), Gaps = 47/297 (15%)
Query: 71 LRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANE-------NPYGPPPE-VREALGQ-LK 121
L++LKPY PF +L + I + E P P P+ + +AL L
Sbjct: 6 LKQLKPY----PFA----RLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLH 57
Query: 122 FPYIYPDPE-SRRLRAALA-------KDSGLESD-HILVGCGADELIDLIMRCVLDP--- 169
YP LR A A +++D IL G+ E + ++ VL+P
Sbjct: 58 ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSD 117
Query: 170 --GDKIVDCPPTFTMYEFDAAVNGAAVVKVP-RKSDFSLNVELIADAVEREKPKCIFLTS 226
IV P + +YE + G + F+ + I++ V ++ K +F+ S
Sbjct: 118 GIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEV-WKRTKLVFVCS 176
Query: 227 PNNPDGSIINDEDLLKILEM----PILVVLDEAYTEF--------SGLESRMEWVKKHDN 274
PNNP GS+++ + ++ ++ ++ DE Y+E L++ + +
Sbjct: 177 PNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQK 236
Query: 275 LIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAK--QPYNVSVAAEVAACAALQNP 329
L++ + SKR+ + GLR G+ A +++ + +S+ + A+ AA +
Sbjct: 237 LLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDE 293
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 94.3 bits (235), Expect = 9e-22
Identities = 53/265 (20%), Positives = 92/265 (34%), Gaps = 50/265 (18%)
Query: 107 YGPPPEVREALGQ-----LKFPYIY-PDPESRRLRAALA----KDSGLESD---HILVGC 153
Y P AL Y RL AL+ + + +LV
Sbjct: 49 YHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTV 108
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP----------RKSDF 203
GA E + ++ +D GD+++ P F YE G +P +D+
Sbjct: 109 GAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADW 168
Query: 204 SLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI----LEMPILVVLDEAYTE- 258
L+ + EK K I + +P+NP G +++ +L + + +L V DE Y
Sbjct: 169 VLDNNELEALF-NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHM 227
Query: 259 -FSGLESRMEWVKKHDNLIVL-----RT-----FSKRAGLAGLRVGYGAFPLSIIEYLWR 307
F +H + L RT K L G ++G+ P ++++ L
Sbjct: 228 VFEP--------FEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQM 279
Query: 308 AKQ--PYNVSVAAEVAACAALQNPI 330
Q Y + + A + +
Sbjct: 280 VHQNCVYTCATPIQEAIAVGFETEL 304
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 93.5 bits (233), Expect = 1e-21
Identities = 58/262 (22%), Positives = 99/262 (37%), Gaps = 49/262 (18%)
Query: 107 YGPPPEVREALGQ---LKFPYIYPDPESR-RLRAALA----KDSGLESD---HILVGCGA 155
PP V+E L + + Y L AL+ K + D ILV GA
Sbjct: 35 ISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGA 94
Query: 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP-----------RKSDFS 204
+ ++ ++DPGD+++ P + YE + GA V +P SD++
Sbjct: 95 YGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWT 154
Query: 205 LNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI----LEMPILVVLDEAYTE-- 258
+ + K K I L +P+NP G + ++L I ++ L + DE Y
Sbjct: 155 FDPRELESKF-SSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLV 213
Query: 259 FSGLESRMEWVKKHDNLIVL-----RT-----FSKRAGLAGLRVGYGAFPLSIIEYLWRA 308
++G H + L RT K + G ++G+ P +I++L
Sbjct: 214 YTG--------HTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQTV 265
Query: 309 KQ--PYNVSVAAEVAACAALQN 328
+Q Y + + A A
Sbjct: 266 QQNSFYTCATPLQAALAEAFWI 287
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 93.5 bits (233), Expect = 1e-21
Identities = 52/265 (19%), Positives = 97/265 (36%), Gaps = 51/265 (19%)
Query: 107 YGPPPEVREALGQ-LKFPYIY----PDPESRRLRAALA----KDSGLESD---HILVGCG 154
+ PP EA + ++ L LA + G E D ++LV G
Sbjct: 40 FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVG 99
Query: 155 ADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP------------RKSD 202
+ + ++D GD+++ P F YE + G V V S+
Sbjct: 100 GYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSN 159
Query: 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI----LEMPILVVLDEAYTE 258
+ L+ +A + K + L +PNNP G + + E+L + + ++ + DE Y
Sbjct: 160 WQLDPMELAGKF-TSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQW 218
Query: 259 --FSGLESRMEWVKKHDNLIVL-----RT-----FSKRAGLAGLRVGYGAFPLSIIEYLW 306
+ G +H ++ L RT K G +VG+ P I+++L
Sbjct: 219 MVYDG--------HQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLR 270
Query: 307 RAKQ--PYNVSVAAEVAACAALQNP 329
Q ++ ++ A + +
Sbjct: 271 TVHQNSVFHCPTQSQAAVAESFERE 295
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 91.5 bits (228), Expect = 7e-21
Identities = 57/259 (22%), Positives = 95/259 (36%), Gaps = 51/259 (19%)
Query: 109 PPPEVREAL-------GQLKFPYIYPDPES--RRLRAALA---KDSGLESDHILVGCGAD 156
V EA Y P+ LR L+ +++ I + GA
Sbjct: 47 LNASVAEAFASSIARLSSPTTCRGYG-PDFGLPALRQKLSEDFYRGFVDAKEIFISDGAK 105
Query: 157 ELIDLI-MRCVLDPGDKIVDCPPTFTMYEFDAAVNGA-AVVKVP--RKSDFSLNVELIAD 212
DL + P + P++ Y A + GA ++ +P +++ F +
Sbjct: 106 V--DLFRLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAF------FPE 157
Query: 213 AVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAYTEF--------S 260
E + L SPNNP G+++N + L I+ IL++ D AY+ F S
Sbjct: 158 FPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKS 217
Query: 261 GLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGY--------GAFPLSIIEYLWRAKQP- 311
E + + I + +FSK G AG+R+G+ A +I+ R
Sbjct: 218 IFE--IPDAR--FCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTT 273
Query: 312 -YNVSVAAEVAACAALQNP 329
S+ A+ A A L
Sbjct: 274 FNGASIPAQEAGVAGLSIL 292
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: LLP; 2.15A {Lactobacillus acidophilus
ncfm}
Length = 533
Score = 91.0 bits (226), Expect = 2e-20
Identities = 50/267 (18%), Positives = 84/267 (31%), Gaps = 30/267 (11%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPE-VREA-LGQLKFPYIYPDPESRRLRAALAK------ 140
+ D V E + V E G + Y PD +
Sbjct: 97 DEDKFLIDAVNYCHTE-LGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELS 155
Query: 141 --DSGLESDH-ILVGCGADELI-----DLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGA 192
D+ L + G I L +L GDKI P FT Y +
Sbjct: 156 YKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDY 215
Query: 193 AVVKVP----RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM-- 246
+V+V K+D+ + I + K + + +P NP + L I +
Sbjct: 216 ELVEVDLHSYEKNDWEIEPNEIEKLKD-PSIKALIVVNPTNPTSKEFDTNALNAIKQAVE 274
Query: 247 ---PILVVLDEAYTEFS-GLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSII 302
++++ DE Y F +S V N +++ ++SK G G R+G A +
Sbjct: 275 KNPKLMIISDEVYGAFVPNFKSIYSVVP--YNTMLVYSYSKLFGCTGWRLGVIALNEKNV 332
Query: 303 EYLWRAKQPYNVSVAAEVAACAALQNP 329
A + + +P
Sbjct: 333 FDDNIAHLDKVELRQLHKRYSSVVLDP 359
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 89.6 bits (223), Expect = 3e-20
Identities = 42/230 (18%), Positives = 74/230 (32%), Gaps = 38/230 (16%)
Query: 134 LRAALA----KDSGLE--SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMY-EFD 186
L ALA + G + +I + G+ + F + E+
Sbjct: 80 LLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYI 139
Query: 187 AAVN-----------GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSII 235
+ + +P + F +V+ + E+ I ++ P NP G++I
Sbjct: 140 GYADSGLEDDLFVSARPNIELLP-EGQFKYHVDFEHLHI-GEETGMICVSRPTNPTGNVI 197
Query: 236 NDEDLLKILEM----PILVVLDEAY------TEFSGLESRMEWVKKHDNLIVLRTFSKRA 285
DE+L+K+ + I +V+D AY FS N+I+ + SK
Sbjct: 198 TDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWN-----PNIILCMSLSK-L 251
Query: 286 GLAGLRVGYGAFPLSIIEYLWRAKQP--YNVSVAAEVAACAALQNPIYLE 333
GL G R G I + C ++ L
Sbjct: 252 GLPGSRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLR 301
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS
protein structure initiative, joint center for
structural G transferase; HET: PLP; 1.90A {Thermotoga
maritima} SCOP: c.67.1.1
Length = 389
Score = 89.5 bits (223), Expect = 3e-20
Identities = 54/267 (20%), Positives = 98/267 (36%), Gaps = 57/267 (21%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
PE +V+ + E Y P E+RE + + + +
Sbjct: 56 PEPVVEEAVRFLQKGEVKYTDPRGIYELREGI-----------------AKRIGERYKKD 98
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKS 201
D ++V GA + + +LDPGD+++ P + Y + G V V
Sbjct: 99 ISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSK 158
Query: 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI----LEMPILVVLDEAYT 257
+F ++E + + K K + + SPNNP G + E L + + ++ DE Y
Sbjct: 159 NFQPSLEEVEGLL-VGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYD 217
Query: 258 EFSGLESRMEWVKKH----------DNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWR 307
+ + D ++ + FSK + G RVGY + +
Sbjct: 218 SLV-------YTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAV-- 268
Query: 308 AK-QPY---NVSVAAEVAACAALQNPI 330
+K Q + ++ A+ AA AL+
Sbjct: 269 SKIQSHTTSCINTVAQYAALKALEVDN 295
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 89.5 bits (223), Expect = 3e-20
Identities = 62/269 (23%), Positives = 109/269 (40%), Gaps = 57/269 (21%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
PE + + I N YG PE+R+A+ + + +G++
Sbjct: 56 PEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVE-----------------REKRKNGVD 98
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKS 201
D + V E + LI +LDPGD+I+ P++ Y G V+ +
Sbjct: 99 ITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEE 158
Query: 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAYT 257
D+ +++ I + ++ K I + +PNNP G++ + + L +IL + I V+ DE Y
Sbjct: 159 DWQPDIDDIRKKIT-DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIY- 216
Query: 258 EFSGLESRMEWVKKH---------DNLIVLRTFSKRAGLAGLRVGYGAF--PLSIIEYLW 306
M + +H +IV+ SK G R+GY F P + + +
Sbjct: 217 ------DLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVR 270
Query: 307 RA--KQPY---NVSVAAEVAACAALQNPI 330
A + + A+ AA A L P+
Sbjct: 271 EAIDRLARIRLCPNTPAQFAAIAGLTGPM 299
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 89.6 bits (223), Expect = 3e-20
Identities = 60/325 (18%), Positives = 121/325 (37%), Gaps = 57/325 (17%)
Query: 45 SSTLPVEQQVNEGQRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANE 104
SS + + + Q S S + K PI + ++ + +
Sbjct: 8 SSGVDLGTENLYFQSMW---SVRPSDMAKKTFN-PIRAIVDNMKVKPNPNKTMISLSIGD 63
Query: 105 -NPYG---PPPEVREAL------GQLKFPYIYPD----PESRRLRAALA-----KDSGLE 145
+G PEV +A+ G+ Y R +A ++ LE
Sbjct: 64 PTVFGNLPTDPEVTQAMKDALDSGKYNG---YAPSIGFLS---SREEIASYYHCPEAPLE 117
Query: 146 SDHILVGCGADELIDLIMRCVLDPGDKIVDCP-PTFTMYEFDAAVNGAAVVKVP--RKSD 202
+ +++ G + IDL + + +PG I+ P P F++Y+ A G V +
Sbjct: 118 AKDVILTSGCSQAIDLCLAVLANPGQNIL-VPRPGFSLYKTLAESMGIEVKLYNLLPEKS 176
Query: 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAY-- 256
+ ++++ + ++ EK C+ + +P+NP GS+ + L KIL + + ++ DE Y
Sbjct: 177 WEIDLKQLEYLID-EKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGD 235
Query: 257 -----TEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGY-------GAFPLSIIEY 304
++ L + + ++ +KR + G R+G+ F I +
Sbjct: 236 MVFSDCKYEPLAT----LSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDG 291
Query: 305 LWRAKQP-YNVSVAAEVAACAALQN 328
L + Q + A + L
Sbjct: 292 LVKLSQRILGPCTIVQGALKSILCR 316
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 89.2 bits (222), Expect = 5e-20
Identities = 49/251 (19%), Positives = 92/251 (36%), Gaps = 33/251 (13%)
Query: 101 DANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADE 157
N Y P PE REA+ + S + D++++ G
Sbjct: 65 SQECNGYFPTVGSPEAREAVAT-WW--------RNSFVHKEELKSTIVKDNVVLCSGGSH 115
Query: 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVE 215
I + + + D GD + P F YE G + ++D+ +++ I +
Sbjct: 116 GILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD 175
Query: 216 REKPKCIFLTSPNNPDGSIINDEDLLKILEMP----ILVVLDEAYTE--FSGLESRMEWV 269
+K K + +T+P+NP GS + + + I+ + + + DE Y F G + +
Sbjct: 176 -DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFT 234
Query: 270 -----KKHDNLIVLRTFSKRAGLAGLRVGYGAFPL------SIIEYLWRAKQP-YNVSVA 317
+ ++L +K + G R+G+ + S +E L R
Sbjct: 235 SVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTV 294
Query: 318 AEVAACAALQN 328
+ A AL N
Sbjct: 295 VQAALGEALLN 305
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 88.1 bits (219), Expect = 1e-19
Identities = 47/263 (17%), Positives = 86/263 (32%), Gaps = 49/263 (18%)
Query: 109 PPPEVREAL-------GQLKFPYIYPDPES--RRLRAALA----KDSGLESDHILVGCGA 155
P + +A+ + Y E LR A+A +G +D I + G+
Sbjct: 83 LPKYIADAMAKAAAGLATREGYSGYG-AEQGQGALREAVASTFYGHAGRAADEIFISDGS 141
Query: 156 DELIDLI-MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIA--- 211
D+ ++ + + P++ +Y + + G D +
Sbjct: 142 KC--DIARIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNH 199
Query: 212 ---DAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAYTEF----- 259
D + ++ IF SPNNP G+ L +++ ++V D AY +
Sbjct: 200 FFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD 259
Query: 260 ---SGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGY--------GAFPLSIIEYLWRA 308
+ E + + I +FSK AG G+R+G+ A + R
Sbjct: 260 CPKTIYE--IPGAD--EVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRV 315
Query: 309 KQP--YNVSVAAEVAACAALQNP 329
S + A LQ
Sbjct: 316 MTTCFNGASNIVQAGGLACLQPE 338
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 88.1 bits (219), Expect = 1e-19
Identities = 49/260 (18%), Positives = 86/260 (33%), Gaps = 48/260 (18%)
Query: 109 PPPEVREAL-------GQLKFPYIYPDPES--RRLRAALA----KDSGLESDHILVGCGA 155
P + A+ ++ Y E + LRAA+A G+ D + V GA
Sbjct: 70 IPEVITSAMAKKAHELSTIEGYSGYG-AEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGA 128
Query: 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVEL------ 209
I + + + I P++ Y + + G + +
Sbjct: 129 KCDISRL-QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPEN 187
Query: 210 --IADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAYTEF---- 259
D + IF SPNNP G+ E L +++E ++V D AY +
Sbjct: 188 GFFPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDD 247
Query: 260 ---SGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQP----- 311
S E + + + + +FS AG G+R+G+ P ++
Sbjct: 248 NPRSIFE--IPGAE--EVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRI 303
Query: 312 -----YNVSVAAEVAACAAL 326
S ++ A A L
Sbjct: 304 ICTCFNGASNISQAGALACL 323
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET:
DCS; 2.71A {Hordeum vulgare}
Length = 500
Score = 87.5 bits (217), Expect = 2e-19
Identities = 40/224 (17%), Positives = 89/224 (39%), Gaps = 30/224 (13%)
Query: 134 LRAALA----KDSGLESD--HILVGCGADELIDLIMRCVL-DPGDKIVDCPPTFTMYEFD 186
LR A+A G ++ I + GA + L+M+ ++ + D I+ P + +Y
Sbjct: 139 LRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSAS 198
Query: 187 AAVNGAAVVKVPRK--SDFSLNVELIADAVERE-----KPKCIFLTSPNNPDGSIINDED 239
A++G A+V + + L + +E + + + +P NP G ++ +E+
Sbjct: 199 IALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEEN 258
Query: 240 LLKILEM----PILVVLDEAYTE-----------FSGLESRMEWVKKHDNLIVLRTFSK- 283
I++ ++++ DE Y E F + + + ++ L+ ++ SK
Sbjct: 259 QYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKG 318
Query: 284 RAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAALQ 327
G G R GY + + +V++ + +
Sbjct: 319 YYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILAS 362
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 87.6 bits (217), Expect = 3e-19
Identities = 46/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 92 RKPEDIVKIDANENPYGPPPEVREA-LGQLKFPYIYPD--PESRR--LRAALAKDSGL-- 144
R + ++ P + E G L Y P +R + ++ G
Sbjct: 101 RFLGKSLSYVRDQLGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADA 160
Query: 145 ---ESDHILVGCGADELI-----DLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVK 196
ES ++ G + L + +L GDK+ P FT Y + A+ +
Sbjct: 161 IPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEE 220
Query: 197 VPRKSDFSLNVELIADAVER---EKPKCIFLTSPNNPDGSIINDEDLLKILEM------P 247
V +D SLN + +++ K F +P+NP ++ L ++ +
Sbjct: 221 VAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPD 280
Query: 248 ILVVLDEAYTEFS-GLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSII 302
++++ D+ Y F+ +S +N +++ +FSK G G R+G A +
Sbjct: 281 LMILTDDVYGTFADDFQSLFAICP--ENTLLVYSFSKYFGATGWRLGVVAAHQQNV 334
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 86.6 bits (215), Expect = 5e-19
Identities = 47/266 (17%), Positives = 94/266 (35%), Gaps = 54/266 (20%)
Query: 107 YGPPPEVREALGQ---LKFPYIY-PDPESRRLRAALA----KDSGLESD--HILVGCGAD 156
Y PP + + + Y P L +L E ++ V GA+
Sbjct: 69 YSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGAN 128
Query: 157 ELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP------------RKSDFS 204
E I + +L+ GD+++ P F Y + + G VV VP R +++
Sbjct: 129 EGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWT 188
Query: 205 LNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI----LEMPILVVLDEAYTEFS 260
++ E A+ K K + + +P+NP G + E+L + ++ ++++ DE Y
Sbjct: 189 IDFEQFEKAI-TSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVY---- 243
Query: 261 GLESRMEWV----KKHDNLIVL-----RT-----FSKRAGLAGLRVGYG-AFPLSIIEYL 305
E + + T K G R+G+ + ++ Y
Sbjct: 244 ------EHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYA 297
Query: 306 WRAKQ--PYNVSVAAEVAACAALQNP 329
+A + + A ++ +
Sbjct: 298 AKAHTRICFASPSPLQEACANSINDA 323
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 85.7 bits (213), Expect = 6e-19
Identities = 50/206 (24%), Positives = 98/206 (47%), Gaps = 32/206 (15%)
Query: 126 YPDPE-SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE 184
Y E LRA +A+ G+ + +L+ G+ + +DL+ + LD G ++ P++
Sbjct: 70 YSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYM--- 126
Query: 185 FDAAVN-----GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPN--NPDGSIIND 237
A+ G + VP + +++ + + ++RE+P+ ++ P+ NP G +
Sbjct: 127 --GAIQAFRLQGPRFLTVPAGEE-GPDLDALEEVLKRERPRFLY-LIPSFQNPTGGLTPL 182
Query: 238 EDLLKILEM----PILVVLDEAYTE--FSGLESRMEWVKKHD------NLIVLRTFSKRA 285
++L+M ++VV D+AY E F +R+ + + +I L +FSK
Sbjct: 183 PARKRLLQMVMERGLVVVEDDAYRELYFGE--ARLPSLFELAREAGYPGVIYLGSFSKV- 239
Query: 286 GLA-GLRVGYGAFPLSIIEYLWRAKQ 310
L+ GLRV + ++ L +AKQ
Sbjct: 240 -LSPGLRVAFAVAHPEALQKLVQAKQ 264
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural
genomics consortium, pyridoxal phosphate; HET: PLP;
2.30A {Homo sapiens}
Length = 498
Score = 83.3 bits (206), Expect = 7e-18
Identities = 45/233 (19%), Positives = 84/233 (36%), Gaps = 37/233 (15%)
Query: 134 LRAALA-----KDSGLESD--HILVGCGADELIDLIMRCVLDPGDKIVD---CP-PTFTM 182
+R +A +D G+ +D +I + GA + I I++ ++ G K P P + +
Sbjct: 134 IREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPL 193
Query: 183 YEFDAAVNGAAVVKVPRK--SDFSLNVE----LIADAVEREKPKCIFLTSPNNPDGSIIN 236
Y + A V + ++LNV + +A + PK + + +P NP G + +
Sbjct: 194 YSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQS 253
Query: 237 DEDLLKILEM----PILVVLDEAYTEF------------SGLESRMEWVKKHDNLIVLRT 280
+ + ++ + ++ DE Y + L + L +
Sbjct: 254 RKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHS 313
Query: 281 FSKR-AGLAGLRVGYGA---FPLSIIEYLWRAKQPYNVSVAAEVAACAALQNP 329
SK G G R GY I L + + AA + NP
Sbjct: 314 TSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNP 366
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 82.1 bits (203), Expect = 1e-17
Identities = 37/236 (15%), Positives = 76/236 (32%), Gaps = 42/236 (17%)
Query: 134 LRAALA----KDSGLE--SDHILVGCGA----DELIDLIMRCVLDPGDKIVDCP------ 177
AL + S++I + G+ L +L ++ + +
Sbjct: 88 FIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSI 147
Query: 178 -----PTFTMYEFDAAVNGAAVVKVPR-----------KSDFSLNVELIADAVE--REKP 219
P + Y +P + ++ E + + +
Sbjct: 148 LLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRI 207
Query: 220 KCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAYTE-FSGLESRMEWVKKHDN 274
I + P NP G+++ DE++ + E+ I +++D AY F + + +N
Sbjct: 208 GAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNN 267
Query: 275 LIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQP--YNVSVAAEVAACAALQN 328
I+ + SK GL G+R G +IE + + A + N
Sbjct: 268 TILCFSLSK-IGLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVAN 322
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP;
1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A*
1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Length = 385
Score = 79.5 bits (197), Expect = 8e-17
Identities = 59/264 (22%), Positives = 107/264 (40%), Gaps = 55/264 (20%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
PE + + + + Y PP PE+REAL + KF +++GL
Sbjct: 46 PEHVKEAARRALAQGKTKYAPPAGIPELREALAE-KF----------------RRENGLS 88
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKS 201
+ +V G + + + + +LDPGD+++ P + Y G VV+V +
Sbjct: 89 VTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEE 148
Query: 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI----LEMPILVVLDEAYT 257
F + E + A+ + K + + SPNNP G++ E L + +E +V DE Y
Sbjct: 149 GFVPDPERVRRAI-TPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIY- 206
Query: 258 EFSGLESRMEWVKKH--------DNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAK 309
+ + +H ++ + + +K + G R+GY P +I+ + A
Sbjct: 207 ------EHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAM--AS 258
Query: 310 -QPY---NVSVAAEVAACAALQNP 329
+ A+ A AL N
Sbjct: 259 VSRQSTTSPDTIAQWATLEALTNQ 282
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
SCOP: c.67.1.1
Length = 388
Score = 77.5 bits (192), Expect = 3e-16
Identities = 61/265 (23%), Positives = 113/265 (42%), Gaps = 53/265 (20%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
P+ IV+ ++ + YGP P +REA+ Q K +D+GL
Sbjct: 45 PKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQ-KL----------------QRDNGLC 87
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKS 201
+D+ILV G + I +M +++PGD+++ P + Y + V +P ++
Sbjct: 88 YGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVET 147
Query: 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDEAY- 256
F ++ E I A+ K K + +P+NP G + +++ I ++ + V+ DE Y
Sbjct: 148 QFKVSPEQIRQAI-TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYE 206
Query: 257 ------TEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ 310
+ + + + +V F+K + G RVG+ A P+ ++ +A
Sbjct: 207 KILYDDAQHLSIGAASPEAY--ERSVVCSGFAKTYAMTGWRVGFLAGPVPLV----KAAT 260
Query: 311 PY------NVSVAAEVAACAALQNP 329
NV A+ A AA +N
Sbjct: 261 KIQGHSTSNVCTFAQYGAIAAYENS 285
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint
center for structural genomics, JCSG; 2.60A {Deinococcus
geothermalis dsm 11300}
Length = 423
Score = 77.8 bits (192), Expect = 4e-16
Identities = 33/193 (17%), Positives = 60/193 (31%), Gaps = 33/193 (17%)
Query: 142 SGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCP-PTFTMYEFDAAVN-----GAAVV 195
S LE +++ + L K++ P +D G ++
Sbjct: 96 SSLELQGLVLTFALLHGVRGSTGPWLSQTPKMI-VTVPG-----YDRHFLLLQTLGFELL 149
Query: 196 KVPRKSDFSLNVELIADAV-EREKPKCIFLTSPN--NPDGSIINDEDLLKILEMP----- 247
V +SD +V+ + K I P NP G I+ E ++ +
Sbjct: 150 TVDMQSD-GPDVDAVERLAGTDPSVKGIL-FVPTYSNPGGETISLEKARRLAGLQAAAPD 207
Query: 248 ILVVLDEAYTE--FSG-----LESRMEWVKKH---DNLIVLRTFSKRAGLAGLRVGYGAF 297
+ D+AY + + + D V + SK AG +G+ A
Sbjct: 208 FTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKIT-FAGAGLGFVAS 266
Query: 298 PLSIIEYLWRAKQ 310
I +L +
Sbjct: 267 SEDNIRWLSKYLG 279
>1vp4_A Aminotransferase, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 425
Score = 76.9 bits (190), Expect = 8e-16
Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 43/217 (19%)
Query: 126 YPDPE-SRRLRAALAK-------DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCP 177
Y E L+ + K +GL+ D+++ G+ + +DLI + LD V
Sbjct: 81 YSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDD 140
Query: 178 PTFTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVER-------EKPKCIFLT 225
P + A+N A V VP + D +++ ++ + ++ K I+
Sbjct: 141 PAYL-----GAINAFRQYLANFVVVPLEDD-GMDLNVLERKLSEFDKNGKIKQVKFIY-V 193
Query: 226 SPN--NPDGSIINDEDLLKILEM----PILVVLDEAYTE--FSGLESRMEWVK---KHDN 274
N NP G + E ++E+ + +V D+ Y + G ++ + +
Sbjct: 194 VSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEG--ETVDPIFKIGGPER 251
Query: 275 LIVLRTFSKRAGLA-GLRVGYGAFPLSIIEYLWRAKQ 310
+++L TFSK LA GLR+G A I + +AKQ
Sbjct: 252 VVLLNTFSKV--LAPGLRIGMVAGSKEFIRKIVQAKQ 286
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe
structural genomics, PSI-2, protein structure
initiative; 2.00A {Corynebacterium diphtheriae}
Length = 422
Score = 76.6 bits (189), Expect = 8e-16
Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 45/213 (21%)
Query: 134 LRAALAKDSGLESDHILVGCGADELI--DLIMRCVL------------DPGDKIVDCP-P 178
+R A+ GL +D ++ G+ I DLI + K + CP P
Sbjct: 81 IRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWL-CPVP 139
Query: 179 TFTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPN--NPD 231
+ D G ++ VP + ++ ++ + V+ + K ++ T P NP
Sbjct: 140 GY-----DRHFTITEHFGFEMINVPMTDE-GPDMGVVRELVKDPQVKGMW-TVPVFGNPT 192
Query: 232 GSIINDEDLLKILEMP-----ILVVLDEAYTE--FSG----LESRMEWVKKHDN---LIV 277
G +++ ++ EM +V D AY S + + +E+ + N
Sbjct: 193 GVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWF 252
Query: 278 LRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ 310
+ + SK AG V + A IE+
Sbjct: 253 MSSTSK-ITHAGSGVSFFASSKENIEWYASHAN 284
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 76.2 bits (188), Expect = 1e-15
Identities = 47/269 (17%), Positives = 84/269 (31%), Gaps = 43/269 (15%)
Query: 103 NENPYGPPPEVREALGQLK----FPYIYPD--PESRRLRAALAK--DSGLESDH---ILV 151
N++ + L FPY P E R L + L D+ +V
Sbjct: 59 NKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIV 118
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVEL 209
+ L+ ++ D I+ + Y+ A ++ D +
Sbjct: 119 TNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDS 178
Query: 210 IADAVEREKPKC---IFLTSPNNPDGSIINDEDLLKILEM---------PILVVLDEAYT 257
+ +A++ K + L PNNP G +++ I+E ++ V+D+AY
Sbjct: 179 LVEALQ-SYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYY 237
Query: 258 EF--------SGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAK 309
S + I L +K G RVG+ F S +
Sbjct: 238 GLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLE 297
Query: 310 QP------YNVS---VAAEVAACAALQNP 329
N+S + + A L+N
Sbjct: 298 AKVKGLIRSNISSGPLPTQSAVKHVLKNN 326
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate
aminotransferase, archaea, thermococcus L transferase;
HET: PMP; 2.30A {Thermococcus litoralis}
Length = 407
Score = 76.1 bits (188), Expect = 1e-15
Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 40/214 (18%)
Query: 126 YPDPE-SRRLRAALA----KDSGLE--SDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
Y LR LA K LE ++I++ G +DL+ R ++DPGD ++ P
Sbjct: 71 YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENP 130
Query: 179 TFTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVER-----EKPKCIFLTSPN 228
++ + GA + VP +D + V+L+ + ++ +K K I+ T P
Sbjct: 131 SYI-----NTLLAFEQLGAKIEGVPVDND-GMRVDLLEEKIKELKAKGQKVKLIY-TIPT 183
Query: 229 --NPDGSIINDEDLLKILEM----PILVVLDEAYTE--FSGLESRMEWVKKHD---NLIV 277
NP G ++ E +LE+ +L++ D AY + G + +K D +IV
Sbjct: 184 GQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEG--GDIVPLKALDNEGRVIV 241
Query: 278 LRTFSKRAGLA-GLRVGYGAFPLSIIEYLWRAKQ 310
T SK L G R+G+ I++ + KQ
Sbjct: 242 AGTLSKV--LGTGFRIGWIIAEGEILKKVLMQKQ 273
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple
complex, schiff-base linkage, kynuren aminotransferase;
HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A*
3ath_A* 3av7_A* 1x0m_A 1wst_A*
Length = 448
Score = 76.1 bits (188), Expect = 1e-15
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 39/213 (18%)
Query: 126 YPDPE-SRRLRAALA---KDSGL--ESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179
Y + LR L + + I++ G+ + +DLI R L+PGD +V PT
Sbjct: 114 YGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPT 173
Query: 180 FTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVER-----EKPKCIFLTSPN- 228
+ AA+ +++P + + VE++ + ++ +K K ++ T P
Sbjct: 174 YL-----AALQAFNFYEPQYIQIPLDDE-GMKVEILEEKLKELKSQGKKVKVVY-TVPTF 226
Query: 229 -NPDGSIINDEDLLKILEM----PILVVLDEAYTE--FSGLESRMEWVK---KHDNLIVL 278
NP G +N++ +LE+ +VV D+ Y E +SG + + +K +I L
Sbjct: 227 QNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSG--NPEKKIKALDNEGRVIYL 284
Query: 279 RTFSKRAGLA-GLRVGYGAFPLSIIEYLWRAKQ 310
TFSK LA G R+G+ II + AKQ
Sbjct: 285 GTFSKI--LAPGFRIGWMVGDPGIIRKMEIAKQ 315
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like
fold structural genomics, joint center for structural
genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium
glutamicum}
Length = 427
Score = 72.8 bits (179), Expect = 2e-14
Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 45/213 (21%)
Query: 134 LRAALAKDSGLESDHILVGCGADELI--------------DLIMRCVLDPGDKIVDCP-P 178
+R A G+ + +L G + I D + + K + CP P
Sbjct: 83 IRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWI-CPVP 141
Query: 179 TFTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPN--NPD 231
+ D + G ++ VP D +++ + + V+ + K ++ P NP
Sbjct: 142 GY-----DRHFSITERFGFEMISVPMNED-GPDMDAVEELVKNPQVKGMW-VVPVFSNPT 194
Query: 232 GSIINDEDLLKILEMP-----ILVVLDEAYTE--FSG-------LESRMEWVKKHDNLIV 277
G + ++ ++ M VV D AY + + E +
Sbjct: 195 GFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWA 254
Query: 278 LRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ 310
+ SK LAG V + ++
Sbjct: 255 FTSTSK-ITLAGAGVSFFLTSAENRKWYTGHAG 286
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha
& beta protein, PLP-dependent transferase, aminotransf
mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB:
2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 71.9 bits (177), Expect = 3e-14
Identities = 53/287 (18%), Positives = 99/287 (34%), Gaps = 55/287 (19%)
Query: 65 SFIRSHLRKLKPYQP-------------ILPFEVLSIQLGRKPEDIVKIDANENP--YGP 109
S IR+ L + PF+ I + + + Y P
Sbjct: 17 SPIRTMTDILSRGPKSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMMKRALQYSP 76
Query: 110 P---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166
PE+ L QL+ + + V G+ + + + +
Sbjct: 77 SAGIPELLSWLKQLQ--------IKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI 128
Query: 167 LDPGDKIVDCPPTF--TMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER-------- 216
++PGD ++ P + T+ G ++ V + + + D + R
Sbjct: 129 INPGDNVLLDEPAYSGTLQSLHPL--GCNIINVASDES-GIVPDSLRDILSRWKPEDAKN 185
Query: 217 ---EKPKCIFLTSPN--NPDGSIINDEDLLKILEM----PILVVLDEAYTEFSGLESRME 267
PK ++ T PN NP G+ + E +I E+ L++ D+ Y + R+
Sbjct: 186 PQKNTPKFLY-TVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVP 244
Query: 268 WVKKHD---NLIVLRTFSKRAGLA-GLRVGYGAFPLSIIEYLWRAKQ 310
D +I +FSK ++ GLR+G+ P +IE + Q
Sbjct: 245 TFLSMDVDGRVIRADSFSKI--ISSGLRIGFLTGPKPLIERVILHIQ 289
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain,
small C-TER domain, open alpha-beta structure.,
transferase; HET: PLP; 2.50A {Escherichia coli} SCOP:
c.67.1.3
Length = 390
Score = 49.4 bits (119), Expect = 7e-07
Identities = 39/217 (17%), Positives = 83/217 (38%), Gaps = 37/217 (17%)
Query: 109 PPPEVREALGQ-LKFP-YIYPDPESRRLRAALAK------DSGLESDHILVGCGADELID 160
P + EAL Q L + Y ++ AA+A + ++S ++ G ++
Sbjct: 42 TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVS 101
Query: 161 LIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADAVE 215
++R + G+ +V P + F A+ N V+ V + + ++ + +
Sbjct: 102 ELIRQWSETGEGVVIHTPAY--DAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLA 159
Query: 216 REKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDE----------AYTEFSG 261
+ + K + L SP NP G + ++L + ++ + V+ DE + +S
Sbjct: 160 KPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSN 219
Query: 262 LESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFP 298
+ + +L + SK + L YG
Sbjct: 220 V--------ARGDWALLTSGSKSFNIPALTGAYGIIE 248
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 48.3 bits (116), Expect = 2e-06
Identities = 51/250 (20%), Positives = 99/250 (39%), Gaps = 43/250 (17%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
P PE++EA+ + Y Y + + L A+ D + + IL G
Sbjct: 75 PVPEIKEAIINYGREHIFGYNYFNDD---LYQAVIDWERKEHDYAVVKEDILFIDGVVPA 131
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADA 213
I + ++ + GD ++ P + Y F + N +V+ + F ++ E +
Sbjct: 132 ISIALQAFSEKGDAVLINSPVY--YPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKD 189
Query: 214 VEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDE----------AYTEF 259
+ K L SP+NP G + +++DL+KI E+ +++V DE +
Sbjct: 190 IIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSL 249
Query: 260 SGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFP----LSIIEYLWRAKQPYNVS 315
+ L++ + D I+L + +K +AG + + +Y A + V
Sbjct: 250 NTLDASYK-----DFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVP 304
Query: 316 VAAEVAACAA 325
+A AA
Sbjct: 305 TVGMIATQAA 314
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus}
PDB: 3b1c_A* 3b1e_A*
Length = 392
Score = 48.3 bits (116), Expect = 2e-06
Identities = 45/250 (18%), Positives = 89/250 (35%), Gaps = 43/250 (17%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
PEV++A+ + Y Y E L A+ + + I+ G
Sbjct: 45 VMPEVKQAIHDYAEQLVYGYTYASDE---LLQAVLDWEKSEHQYSFDKEDIVFVEGVVPA 101
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADA 213
I + ++ G+ ++ P + F +V N +V K + F ++ E + +
Sbjct: 102 ISIAIQAFTKEGEAVLINSPVY--PPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLEND 159
Query: 214 VEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDE----------AYTEF 259
+ K L +P+NP G + E L +I + +++V DE + F
Sbjct: 160 IVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSF 219
Query: 260 SGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFP----LSIIEYLWRAKQPYNVS 315
+ + D +VL + +K +AG + Y + ++ + VS
Sbjct: 220 NTVSPDF-----KDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVS 274
Query: 316 VAAEVAACAA 325
+A A
Sbjct: 275 SLGYIATETA 284
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 2e-06
Identities = 44/275 (16%), Positives = 80/275 (29%), Gaps = 106/275 (38%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAK 140
+ FE Q K DI+ + E+ + V + D ++ L+K
Sbjct: 7 MDFETGEHQYQYK--DILSV--FEDAF-----VDN----FDCKDV-QD----MPKSILSK 48
Query: 141 DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTF------TMYEF--------- 185
+ E DHI++ A + +L +++V F Y+F
Sbjct: 49 E---EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ---KFVEEVLRINYKFLMSPIKTEQ 102
Query: 186 --------------DAAVNGAAVVK---VPRKSDF--------SLNVE------------ 208
D N V V R + L
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 209 ---LIADAVEREKPKC-----IF-LTSPNNPDGSIINDEDLLKILEMPILVVLDEAYTE- 258
+ D K +C IF L + + E +L++L+ +L +D +T
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNL-----KNCNSPETVLEMLQK-LLYQIDPNWTSR 216
Query: 259 ---FSGLESRMEWVKKHDN-----------LIVLR 279
S ++ R+ ++ L+VL
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Score = 46.4 bits (109), Expect = 1e-05
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 22/120 (18%)
Query: 65 SFIRSHLRKLKPYQPILPFEVLSIQLG--RKPEDIVKIDANENPYGPPPEVREALGQLKF 122
S I HL+ ++ + + F ++ + + KI + + + L QLKF
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ-----KIRHDSTAWNASGSILNTLQQLKF 529
Query: 123 --PYIYP-DPESRRLRAALAKDSGLESDHILVGCGADELI----DLIMRCVLDPGDKIVD 175
PYI DP+ RL A+ L + + DL+ ++ + I +
Sbjct: 530 YKPYICDNDPKYERLVNAIL--------DFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 45.2 bits (106), Expect = 2e-05
Identities = 46/337 (13%), Positives = 97/337 (28%), Gaps = 110/337 (32%)
Query: 67 IRSHLRKLKPYQPI--------------------------LPFEVLSIQLGR--KPEDIV 98
+R L +L+P + + + F++ + L PE ++
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 99 KIDAN-----ENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGC 153
++ + + + + R+ + A+ L C
Sbjct: 200 EMLQKLLYQIDPNWTSRSD-------------HSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 154 GADELIDLIMRCVLDPGDKIVD-----CPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208
L L++ V + K + C T V + + SL +
Sbjct: 247 ----L--LVLLNVQNA--KAWNAFNLSCKILLTTR--FKQV--TDFLSAATTTHISL--D 292
Query: 209 LIADAVEREKPKCIFLTSPNNPDGSIINDEDL----LKILEMPILV-VLDEAYTEFSGLE 263
+ + ++ K + L + +DL L P + ++ E+ +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLD------CRPQDLPREVLTT--NPRRLSIIAESIRDGL--- 341
Query: 264 SRME-WVKKHDNLIVLRTFSKRAGLAGL-----RVGYGAF---------PLSIIEYLWRA 308
+ + W KH N L T + + L L R + P ++ +W
Sbjct: 342 ATWDNW--KHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 309 KQPYNV-SVAAE-VAACAALQNP---------IYLEV 334
+V V + + P IYLE+
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative
PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A
{Lactobacillus delbrueckii subsp}
Length = 391
Score = 47.5 bits (114), Expect = 3e-06
Identities = 41/219 (18%), Positives = 83/219 (37%), Gaps = 39/219 (17%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
PE+ ++ + LK Y E A+A + + D + G
Sbjct: 41 IAPEIMASMEEKLKVAAFGYESVPAE---YYKAVADWEEIEHRARPKEDWCVFASGVVPA 97
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADA 213
I ++R PGD+I+ P + F + + NG V+ + +S+N + +
Sbjct: 98 ISAMVRQFTSPGDQILVQEPVY--NMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEK 155
Query: 214 VEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDE----------AYTEF 259
+ + + +P+NP G ++E++ +I E+ +L++ DE T
Sbjct: 156 LATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPA 215
Query: 260 SGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFP 298
++ + + ++ L + SK LA L P
Sbjct: 216 FTVDWDAK-----NWVVSLISPSKTFNLAALHAACAIIP 249
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate;
HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3
PDB: 1c7o_A*
Length = 399
Score = 47.1 bits (113), Expect = 4e-06
Identities = 42/250 (16%), Positives = 86/250 (34%), Gaps = 43/250 (17%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
PPE+ E L + L Y P E + + K +++D I+ G
Sbjct: 45 NPPELIEGLKKYLDETVLGYTGPTEE---YKKTVKKWMKDRHQWDIQTDWIINTAGVVPA 101
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADA 213
+ +R PGD ++ P + Y F A+ +++ ++++ + +
Sbjct: 102 VFNAVREFTKPGDGVIIITPVY--YPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKL 159
Query: 214 VEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDE----------AYTEF 259
+ + K + SP+NP G + ++L KI ++ +++ DE +T F
Sbjct: 160 SKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVF 219
Query: 260 SGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFP----LSIIEYLWRAKQPYNVS 315
++ ++ D I SK +AG+ + A +
Sbjct: 220 QSIDEQL-----ADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFT 274
Query: 316 VAAEVAACAA 325
A
Sbjct: 275 TLGYKACEIC 284
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase;
PLP-dependent transferase-like fold, structural
genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Length = 377
Score = 46.7 bits (112), Expect = 5e-06
Identities = 39/245 (15%), Positives = 75/245 (30%), Gaps = 41/245 (16%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
P V +A+ ++ Y L A A+ + I
Sbjct: 37 TCPAVLQAITDAVQREAFGYQPDGSL---LSQATAEFYADRYGYQARPEWIFPIPDVVRG 93
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSDFSLNVELIADAVER 216
+ + + K++ P + F + + + +N+ + +
Sbjct: 94 LYIAIDHFTPAQSKVIVPTPAY--PPFFHLLSATQREGIFIDAT--GGINLHDVEKGF-Q 148
Query: 217 EKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDE---------AYTEFSGLE 263
+ I L +P NP G + E L ++ ++ V++DE +T +G+
Sbjct: 149 AGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVS 208
Query: 264 SRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQP---YNVSVAAEV 320
I + SK +AGL+ F W+ P S +
Sbjct: 209 DTAA-----SVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLI 263
Query: 321 AACAA 325
AA AA
Sbjct: 264 AAEAA 268
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus
anthracis str} PDB: 3t32_A*
Length = 383
Score = 44.4 bits (106), Expect = 3e-05
Identities = 39/219 (17%), Positives = 80/219 (36%), Gaps = 40/219 (18%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
P ++ AL + ++ P Y P + + + ++ + I+ G
Sbjct: 38 VPQPIQTALKKRIEHPIFGYTLPPEN---IGDIICNWTKKQYNWDIQKEWIVFSAGIVPA 94
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADA 213
+ ++ + ++ PP + F V N + P + ++++ E +
Sbjct: 95 LSTSIQAFTKENESVLVQPPIY--PPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQ 152
Query: 214 VEREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDE----------AYTEF 259
++ K + L SP+NP G + E+L K+ + ++VV DE +T F
Sbjct: 153 F-QQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPF 211
Query: 260 SGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFP 298
+ L + I SK +AGL+ P
Sbjct: 212 ASLSEEL-----AARTITCMAPSKTFNIAGLQASIIIIP 245
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 5e-05
Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 70/184 (38%)
Query: 38 QRRVIAMSSTLPVEQQV-----NEGQRR--LTGDSFIRS------HLRKLK----PYQPI 80
Q V +S LP +QV N G + ++G +S LRK K Q
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSG--PPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 81 LPFEVLSIQLGRKPEDIVK---IDANENPY------GPPPEVREALG---------QLKF 122
+PF RK + + + + P+ + + L ++
Sbjct: 407 IPFS------ERKLKFSNRFLPVAS---PFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 123 PYIYPDPES-RRLRAALAKDSGLESDHILVGCGADELIDLIMR-------CVLDPGDKIV 174
P +Y D LR S I + ++D I+R I+
Sbjct: 458 P-VY-DTFDGSDLRV--------LSGSIS-----ERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 175 DCPP 178
D P
Sbjct: 503 DFGP 506
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: PLP; 1.50A {Clostridium
difficile} PDB: 4dgt_A*
Length = 391
Score = 42.5 bits (101), Expect = 1e-04
Identities = 36/226 (15%), Positives = 79/226 (34%), Gaps = 54/226 (23%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
P + ++L L+ Y ++ + ++S+ ++ G
Sbjct: 46 AAPCIIDSLKNRLEQEIYGYTTRPDS---YNESIVNWLYRRHNWKIKSEWLIYSPGVIPA 102
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKS--------DFSLNVE 208
I L++ + DKI+ P + F++ V N ++ P + D+
Sbjct: 103 ISLLINELTKANDKIMIQEPVY--SPFNSVVKNNNRELIISPLQKLENGNYIMDY----- 155
Query: 209 LIADAVER--EKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLDE-------- 254
+ +E + K L +P+NP G + ++L K+ ++ + ++ DE
Sbjct: 156 ---EDIENKIKDVKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILK 212
Query: 255 --AYTEFSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFP 298
+ + + N I +K +AGL+ Y P
Sbjct: 213 KHKHIPMASISKEF-----EKNTITCMAPTKTFNIAGLQSSYVVLP 253
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance;
putative cystathionine beta-lyase involved in aluminum
resis structural genomics; HET: LLP; 1.91A {Listeria
monocytogenes str} PDB: 3fd0_A*
Length = 409
Score = 38.2 bits (89), Expect = 0.003
Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 26/159 (16%)
Query: 123 PYIYPD---PESRRLRAALAK-DSGLESDHILVGCGADELIDLIMRCVLDPGDKIV--DC 176
Y Y D R+ A + K ++ L I+ G A I ++ +L P D+++
Sbjct: 53 GYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHA---ISTVLFGILRPDDELLYITG 109
Query: 177 PPTFTMYEFDAAVN---------GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSP 227
P T+ E VP + ++ IA + K K I +
Sbjct: 110 QPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKM-TPKTKMIGIQRS 168
Query: 228 ----NNPDGSIINDEDLLKILEM---PILVVLDEAYTEF 259
+ P +I ++++ ++ ++V +D Y EF
Sbjct: 169 RGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEF 207
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 36.2 bits (84), Expect = 0.013
Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 42/196 (21%)
Query: 92 RKPEDIVKIDANENPYGPPPEVREA------------------LGQLKFPYIYPDPESRR 133
R+ +D + ID + E R+A L ++K P I+ +
Sbjct: 4 RETKDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIH---DFIH 60
Query: 134 LRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE----FDAAV 189
+ L D V GA E +M + +V + AA
Sbjct: 61 NQLPKF----LGCDVARVTNGAREAKFAVMHSLAKKDAWVV-----MDENCHYSSYVAAE 111
Query: 190 -NGAAVVKVP--RKSDFSLNVE----LIADAVEREKPKCIFLTSPNNPDGSIINDEDLLK 242
G + VP D+++ E I + +R + +T P+ G++ + + + K
Sbjct: 112 RAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAK 171
Query: 243 IL-EMPILVVLDEAYT 257
+ E + ++++ AY
Sbjct: 172 VCSEYDVPLLVNGAYA 187
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A
{Mycobacterium ulcerans} PDB: 3qi6_A*
Length = 392
Score = 35.6 bits (83), Expect = 0.019
Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 36/144 (25%)
Query: 113 VREALGQLKFPYIYPDPESRRL---RAALAKD-SGLES-DHILV---GCGADELIDLIMR 164
++ +G L+ Y Y +R R AL + +E G A D +R
Sbjct: 47 AQDGVGGLRGGYEY----ARTGNPTRTALEAALAAVEDAAFGRAFSSGMAA---ADCALR 99
Query: 165 CVLDPGDKIVDCPP-----TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKP 219
+L PGD +V P TF + + V + +++ + A+ R
Sbjct: 100 AMLRPGDHVV-IPDDAYGGTFRLIDKVFTGWNVEYTPV----ALA-DLDAVRAAI-RPTT 152
Query: 220 KCIFLTSPNNPDGSIINDEDLLKI 243
+ I++ +P NP LL I
Sbjct: 153 RLIWVETPTNP---------LLSI 167
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 34.8 bits (80), Expect = 0.032
Identities = 30/173 (17%), Positives = 55/173 (31%), Gaps = 29/173 (16%)
Query: 112 EVREALGQLKFPYIYPD---PESRRLRAALAK-DSGLESDHILVGCGADELIDLIMRCVL 167
+ EA Y Y D + A + +S L H + G A + + L
Sbjct: 56 RISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHA---LGAALFGNL 112
Query: 168 DPGDKIV--DCPPTFTMYE--------FDAAVN--GAAVVKVPRKSDFSLNVELIADAVE 215
PG+ ++ P T+++ ++ G +V K D N+E I +
Sbjct: 113 RPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVL- 171
Query: 216 REKPKCIFLTSPNNPDGSIINDEDLLKILEM---------PILVVLDEAYTEF 259
+E + + + I + I+ +D Y EF
Sbjct: 172 KEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEF 224
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 33.9 bits (78), Expect = 0.061
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 194 VVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKILE 245
+ P K D++++ + + DAVE I + G+I N E+L KI +
Sbjct: 147 YIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAK 198
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent
enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A
{Escherichia coli} SCOP: c.67.1.3
Length = 386
Score = 32.5 bits (75), Expect = 0.16
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 24/97 (24%)
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPP-----TFTMYEFDAAVNGAAVVKVPRKSDFSLN 206
G A I L+ L PGD +V P ++ +++ A V+ V D +
Sbjct: 76 GMSA---IHLVTTVFLKPGDLLV-APHDCYGGSYRLFDSLAKRGCYRVLFV----DQG-D 126
Query: 207 VELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI 243
+ + A+ EKPK + + SP+NP LL++
Sbjct: 127 EQALRAAL-AEKPKLVLVESPSNP---------LLRV 153
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.9 bits (75), Expect = 0.18
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 148 HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS 201
H GA + + +L+ G I+ P D + V P K+
Sbjct: 1384 HPKGAAGAWMMNGALQ--ILNSG--II--PGNRNADNVDKILEQFEYVLYPSKT 1431
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
structure, cytosol; HET: AKG GOL; 2.20A {Veillonella
parvula}
Length = 418
Score = 32.3 bits (74), Expect = 0.22
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 17/83 (20%)
Query: 228 NNPDGSIINDEDLLKILEM----------PILVVLDEAYTEFS-GLESRMEWVKKHDNL- 275
NNP G I D+D IL +++ +D AY ++S + + K +L
Sbjct: 190 NNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLP 249
Query: 276 -----IVLRTFSKRAGLAGLRVG 293
V + SK + G RVG
Sbjct: 250 KEILTCVCYSLSKGFTMYGQRVG 272
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia
coli} SCOP: d.151.1.1
Length = 268
Score = 31.7 bits (73), Expect = 0.27
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 23/94 (24%)
Query: 94 PEDIVKIDANENPYGPP------PEVREALGQLK-------FPYIYPDPESR------RL 134
DI + N + PE RE + +L F + P R R
Sbjct: 158 DLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYR- 216
Query: 135 RAALAKDSGLESDHILVGCGADELIDLIMRCVLD 168
+ GL D +L + L + + +D
Sbjct: 217 SKGFDDNRGLRIDLLLA---SQPLAECCVETGID 247
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease,
lyase; 1.7A {Archaeoglobus fulgidus}
Length = 257
Score = 30.9 bits (71), Expect = 0.40
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 15/70 (21%)
Query: 111 PEVREALGQLK-------FPYIYPDPESR-----RLRAALAKDSGLESDHILVGCGADEL 158
+ R A ++ I+P+ R++ A+ + G D IL L
Sbjct: 170 EDARRAYKKILELGFVDVLRKIHPNERIYTFYDYRVKGAIERGLGWRGDAILAT---PPL 226
Query: 159 IDLIMRCVLD 168
+ + C D
Sbjct: 227 AERCVDCYAD 236
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent
enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas
vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Length = 404
Score = 31.4 bits (72), Expect = 0.46
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPP----TFTMYEFDAAVNGAAVVKVPRKSDFSLNV 207
G GA I + +L GD ++ T ++E G V + + +
Sbjct: 86 GMGA---IAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFI----NTA-IP 137
Query: 208 ELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKIL--EMPILVVLD 253
+ + + K ++ +P NP II+ E + K + +LV+ D
Sbjct: 138 GEVKKHM-KPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIAD 184
>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1;
glutathione-S-tranferase superfamily, chloride ION
channel, metal transport; 1.40A {Homo sapiens} SCOP:
a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A
3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A
Length = 241
Score = 30.7 bits (69), Expect = 0.48
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
+ F V ++ R+ E + K+ P G P
Sbjct: 39 VTFNVTTVDTKRRTETVQKL----CPGGELP 65
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis}
SCOP: c.67.1.3
Length = 331
Score = 30.9 bits (71), Expect = 0.51
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 15/108 (13%)
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPP----TFTMYEFDAAVNGAAVVKVPRKSDFSLNV 207
G GA I + L GD ++ T ++E G V + D +
Sbjct: 22 GMGA---IAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFI----DMA-VP 73
Query: 208 ELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKIL--EMPILVVLD 253
I + + + ++ +P NP +I+ ED +K + ILV++D
Sbjct: 74 GNIEKHL-KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD 120
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis,
pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A
{Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A*
1i43_A*
Length = 445
Score = 30.7 bits (70), Expect = 0.63
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 159 IDLIMRCVLDPGDKIVDCPP----TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAV 214
+++ ++ G IV T E G + D + +V + A+
Sbjct: 142 STVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVI----DPA-DVGALELAL 196
Query: 215 EREKPKCIFLTSPNNP 230
++K F SP NP
Sbjct: 197 NQKKVNLFFTESPTNP 212
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center
for structural genomics, P 5'-phosphate binding; HET:
PLP; 2.86A {Anaerococcus prevotii}
Length = 413
Score = 30.7 bits (70), Expect = 0.64
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 18/110 (16%)
Query: 202 DFSLNVELIADAVEREKPKCIFLTSP-NNPDGSIINDEDLLKILEM----------PILV 250
+ + E I + + + SP NNP G ++DE+ +++ I +
Sbjct: 162 NIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITL 221
Query: 251 VLDEAYTEFSG-LES------RMEWVKKHDNLIVLRTFSKRAGLAGLRVG 293
++D AY EF+G + + + ++ ++V + SK GLR G
Sbjct: 222 IVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHTAYGLRSG 271
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 30.3 bits (69), Expect = 0.83
Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 21/151 (13%)
Query: 108 GPPPEVREALGQLKFPYIYP---DPESRRLRAALAKDSGLESDHILV---GCGADELIDL 161
G P++ + + + D + + + + G + +
Sbjct: 25 GMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNL---I 81
Query: 162 IMRCVLDPGDKIVDCPPT--FTMYEFDA-AVNGAAVVKVPRKSDFSLNVELIADAVERE- 217
L P + ++ + +E A G VV P D L V I A+
Sbjct: 82 ACSLALRPWEAVI-ATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHENR 139
Query: 218 -----KPKCIFLTSPNNPDGSIINDEDLLKI 243
PK +++++ G+ ++L I
Sbjct: 140 SEHMVIPKLVYISNTTE-VGTQYTKQELEDI 169
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease; HET:
LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Length = 420
Score = 30.3 bits (69), Expect = 1.00
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 229 NPDGSIINDEDLLKILEM----PILVVLDEAYTEF-SGLES-----RMEWVKKHDNLIVL 278
NP G +ND +++E+ ++ LD AY F +E+ R+ + + N+ V
Sbjct: 206 NPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRL-FAAANLNVFVS 264
Query: 279 RTFSKRAGLAGLRVG 293
+FSK L G RVG
Sbjct: 265 SSFSKSFSLYGERVG 279
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.0
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 16/40 (40%)
Query: 51 EQQVNEGQRRLTGDSFIRSHLRKLKPYQP-ILPFEVLSIQ 89
+Q + ++L LK Y P L+I+
Sbjct: 19 KQAL----KKLQA---------SLKLYADDSAP--ALAIK 43
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A*
1ukj_A* 2o7c_A*
Length = 398
Score = 30.2 bits (69), Expect = 1.0
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPP----TFTMYEFDAAVNGAAVVKVPRKSDFSLNV 207
G GA I + +L PGD+++ TF G + V D + ++
Sbjct: 89 GMGA---ITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHV----DMA-DL 140
Query: 208 ELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKIL-EMPILVVLD 253
+ + A+ + I+ SP NP+ + + + KI + VV+D
Sbjct: 141 QALEAAM-TPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVD 186
>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase
superfamily, CLIC4, NCC27, chloride ION channel, metal
transport; 1.80A {Homo sapiens} PDB: 2d2z_A
Length = 267
Score = 30.0 bits (67), Expect = 1.0
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
+ F V ++ L RKP D+ + P PP
Sbjct: 50 VVFSVTTVDLKRKPADLQNL----APGTHPP 76
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 30.1 bits (68), Expect = 1.1
Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 26/158 (16%)
Query: 124 YIYPD---PESRRLRAALAK-DSGLESDHILVGCGADELIDLIMRCVLDPGDKIV--DCP 177
Y Y D ++ A + ++GL I+ G A I + +L PGD+++
Sbjct: 60 YGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHA---ISTALFGILRPGDELLYITGK 116
Query: 178 PTFTMYEFDAAVN---------GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSP- 227
P T+ E VP ++ E +A A+ K I +
Sbjct: 117 PYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAI-HSNTKMIGIQRSK 175
Query: 228 ---NNPDGSIINDEDLLKILEMP---ILVVLDEAYTEF 259
P +I ++++ ++ ++V +D Y EF
Sbjct: 176 GYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEF 213
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase,
pyridoxal phosphate, internal ALD schiff base,
amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia
coli k-12} PDB: 3tat_A*
Length = 397
Score = 29.9 bits (68), Expect = 1.1
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 204 SLNVELIADAVEREKPKCIFLTSP--NNPDGSIINDEDLLKILEM----PILVVLDEAYT 257
+ + ++ + I L P +NP G+ + ++ ++E+ ++ LD AY
Sbjct: 157 GVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQ 216
Query: 258 EF-SGLES-----RMEWVKKHDNLIVLRTFSKRAGLAGLRVG 293
F +G+E R +V +FSK L G RVG
Sbjct: 217 GFGAGMEEDAYAIRA-IASAGLPALVSNSFSKIFSLYGERVG 257
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 483
Score = 30.2 bits (68), Expect = 1.1
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 24/118 (20%)
Query: 148 HIL---VGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFS 204
HI+ + C R G + T + E D + G A ++
Sbjct: 62 HIVHGPIACAGS---SWDNRGTRSSGPDLYRIGMTTDLTENDV-IMGRAEKRL------- 110
Query: 205 LNVELIADAVEREKPKCIFLTSPNNPDGSIIND------EDLLKILEMPILVVLDEAY 256
I AVE P +F+ + P +I D + + P++ V +
Sbjct: 111 --FHAIRQAVESYSPPAVFVYNTCVPA--LIGDDVDAVCKAAAERFGTPVIPVDSAGF 164
>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC,
chloride channel, ION transport, ionic channel, nucleus,
transport, gated channel; 1.95A {Homo sapiens} PDB:
3kjy_A
Length = 250
Score = 29.6 bits (66), Expect = 1.2
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
+PF + ++ R P+ + P P
Sbjct: 57 VPFTLTTVDTRRSPDVLKDF----APGSQLP 83
>2r4v_A XAP121, chloride intracellular channel protein 2; chloride
intracellular channels, CLIC2, pore-forming protein
ryanodine receptor, chloride channel; HET: GSH; 1.85A
{Homo sapiens} PDB: 2r5g_A 2per_A*
Length = 247
Score = 29.5 bits (66), Expect = 1.3
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
+ F V ++ + RKPE++ + P PP
Sbjct: 45 VKFNVTTVDMTRKPEELKDL----APGTNPP 71
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A
{Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A*
1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A*
2ay7_A* 2ay8_A* 2ay9_A*
Length = 394
Score = 29.5 bits (67), Expect = 1.5
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 229 NPDGSIINDEDLLKILEM----PILVVLDEAYTEF-SGLES-----RMEWVKKHDNLIVL 278
NP G+ + + +I + L ++D AY F GLE R+ + +++
Sbjct: 180 NPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRL-IASRIPEVLIA 238
Query: 279 RTFSKRAGLAGLRVG 293
+ SK G+ R G
Sbjct: 239 ASCSKNFGIYRERTG 253
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 29.5 bits (67), Expect = 1.6
Identities = 10/96 (10%), Positives = 31/96 (32%), Gaps = 29/96 (30%)
Query: 208 ELIADAVEREKPKCIFLTSPNNPDGS-------IINDEDLLKILEMPI------------ 248
+ + + K + ++ DG+ E+++ + ++ +
Sbjct: 227 GISKELAKTTKATIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDDIGVPGSHNVENALAT 286
Query: 249 ----------LVVLDEAYTEFSGLESRMEWVKKHDN 274
V+ E + F G++ R++ + K
Sbjct: 287 IAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHG 322
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA
repair, exonuclease, endonuclease; HET: 1PE; 1.90A
{Neisseria meningitidis}
Length = 256
Score = 29.4 bits (67), Expect = 1.6
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 18/71 (25%)
Query: 111 PEVREALGQLK-------FPYIYPDPES------RRLRAALAKDSGLESDHILVGCGADE 157
R+ L ++P+ R + GL DHILV
Sbjct: 170 SVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGA--MFQRKLGLRIDHILVS---PA 224
Query: 158 LIDLIMRCVLD 168
+ + +D
Sbjct: 225 MAAALKDVRVD 235
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent
enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB:
1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Length = 398
Score = 29.4 bits (67), Expect = 1.8
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 23/124 (18%)
Query: 135 RAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP----TFTMYEFDAAVN 190
A LA SG+ A I + + GD IV T
Sbjct: 80 EAGLATASGI---------SA---ITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 191 GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKIL-EMPIL 249
G V V D + E I A+ R + K +++ +P NP S+++ E + I + L
Sbjct: 128 GINVRFV----DAA-KPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGAL 181
Query: 250 VVLD 253
+V+D
Sbjct: 182 LVVD 185
>2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST fold,
metal transport; 1.70A {Drosophila melanogaster}
Length = 260
Score = 28.9 bits (64), Expect = 1.9
Identities = 5/31 (16%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
+ +V ++ + + P D PP
Sbjct: 59 ISLKVTTVDMQKPPPDFRTN----FEATHPP 85
>3ue3_A Septum formation, penicillin binding protein 3, peptidoglycan
synthetase; transpeptidase, transferase; 2.30A
{Acinetobacter}
Length = 554
Score = 29.5 bits (67), Expect = 1.9
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 110 PPEVREALGQLKFPYIYPDPESRR 133
PP+ + + Q F +Y + +R
Sbjct: 116 PPQQADLILQHNFQGVYTEKSYKR 139
>3pbt_A Penicillin-binding protein 3; PBP3, hydrolase-antibiotic complex;
HET: UE1; 1.64A {Pseudomonas aeruginosa} PDB: 3pbn_A*
3pbo_A* 3pbr_A* 3pbs_A* 3pbq_A* 3oc2_A 3ocl_A* 3ocn_A*
Length = 538
Score = 29.1 bits (66), Expect = 2.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 110 PPEVREALGQLKFPYIYPDPESRR 133
PE E + LK P +Y E RR
Sbjct: 89 TPEQGEGVIALKVPGVYSIEEFRR 112
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 28.5 bits (64), Expect = 2.1
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 173 IVDCPPTFTMYEFDAAVNGAAVVKVP-RKSDFSL--NVELIADAVEREKPKCIFLTSPNN 229
++D + +A +G ++ +P +L + I + + L +
Sbjct: 72 VIDTQARPEDEDLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIP 131
Query: 230 PDGSIINDE--DLLKILEMPIL 249
P S DE LL +P+
Sbjct: 132 PYPSKDGDEARQLLTTAGLPLF 153
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta,
PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia
coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A*
2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A*
1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A*
1asn_A* 1c9c_A* 1cq6_A* ...
Length = 396
Score = 29.1 bits (66), Expect = 2.1
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 229 NPDGSIINDEDLLKILEM----PILVVLDEAYTEF-SGLES-----RMEWVKKHDNLIVL 278
NP G E + ++ L + D AY F GLE R + H LIV
Sbjct: 183 NPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRA-FAAMHKELIVA 241
Query: 279 RTFSKRAGLAGLRVG 293
++S GL RVG
Sbjct: 242 SSYSXNFGLYNERVG 256
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 28.9 bits (65), Expect = 2.2
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 10/68 (14%)
Query: 105 NPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164
G E+ E L P I D + + L +D + D +I+
Sbjct: 138 GSAGLVVEIHEDL----RPIINYDFTREGMVHLVKA---LTNDGFKID---DAMINSRYT 187
Query: 165 CVLDPGDK 172
D +
Sbjct: 188 YATDEATR 195
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine
biosynthesis, transsulfurat lyase; HET: PLP; 2.30A
{Arabidopsis thaliana} SCOP: c.67.1.3
Length = 464
Score = 29.2 bits (66), Expect = 2.3
Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 25/97 (25%)
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPP-----TFTMYEFDAAVNGAAVVKVPRKSDFSLN 206
G A + + ++ G++IV + + +G V +V + +
Sbjct: 157 GMAA---LSAVTH-LIKNGEEIV-AGDDVYGGSDRLLSQVVPRSGVVVKRV----NTT-K 206
Query: 207 VELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI 243
++ +A A+ + K ++L SP NP +I
Sbjct: 207 LDEVAAAI-GPQTKLVWLESPTNP---------RQQI 233
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics
center for infectious disease, S mycobacterium, PLP,
schiff base; HET: LLP; 1.85A {Mycobacterium
tuberculosis}
Length = 414
Score = 28.7 bits (65), Expect = 3.0
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 17/103 (16%)
Query: 159 IDLIMRCVLDPGDKIVDCPPTF--TMYEFDAAVN--GAAVVKVPRKSDFSLNVELIADAV 214
+ + +L GD++V F + G V V D ++ A+
Sbjct: 109 VFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFV----DGD-DLSQWERAL 163
Query: 215 EREKPKCIFLTSPNNPDGSIINDEDLLKILEM----PILVVLD 253
+ +F +P+NP S++ D+ + E+ VVLD
Sbjct: 164 -SVPTQAVFFETPSNPMQSLV---DIAAVTELAHAAGAKVVLD 202
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell
DIV cell inner membrane, cell membrane, cell shape; HET:
SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Length = 542
Score = 28.3 bits (64), Expect = 3.6
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 110 PPEVREALGQLKFPYIYPDPESRR 133
P+V E + L + E +R
Sbjct: 105 DPKVAEEVKALGLENFVFEKELKR 128
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog;
NP_348457.1, putative cystathionine beta-lyase involved
in A resistance; HET: LLP MSE; 2.00A {Clostridium
acetobutylicum}
Length = 427
Score = 28.2 bits (63), Expect = 4.0
Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 30/162 (18%)
Query: 123 PYIYPD---PESRRLRAALAK-DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
Y Y D R+ A + +S H + G A I + L P D ++
Sbjct: 68 GYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHA---IGAALFGNLRPNDTMMS--I 122
Query: 179 TFTMYEFDAAV---NGAAVVKVPRK----------SDFSLNVELIADAVEREKP-KCIFL 224
Y+ + + + V R+ D +++ + + ++++ K I +
Sbjct: 123 CGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHI 182
Query: 225 TSPNN----PDGSIINDEDLLKILEMP---ILVVLDEAYTEF 259
I +++K + ++V +D Y EF
Sbjct: 183 QRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEF 224
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT
structure initiative; HET: MSE; 1.80A {Pseudomonas
aeruginosa PAO1} SCOP: c.1.15.7
Length = 264
Score = 27.7 bits (61), Expect = 5.0
Identities = 13/72 (18%), Positives = 18/72 (25%), Gaps = 8/72 (11%)
Query: 259 FSGLESRMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAA 318
+E R E + L L GL + S LWR N +
Sbjct: 37 AQRVELREELFAGPPDTEALT---AAIQLQGLECVF-----SSPLELWREDGQLNPELEP 88
Query: 319 EVAACAALQNPI 330
+ A
Sbjct: 89 TLRRAEACGAGW 100
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC,
inhibitor, structural genom stockholm, structural
genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB:
2nmp_A* 3elp_B
Length = 403
Score = 27.9 bits (63), Expect = 5.2
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 25/97 (25%)
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPP-----TFTMYEFDAAVNGAAVVKVPRKSDFSLN 206
G A I +L GD+I+ C T + A+ G + V D S
Sbjct: 91 GLAA---TVTITH-LLKAGDQII-CMDDVYGGTNRYFRQVASEFGLKISFV----DCS-K 140
Query: 207 VELIADAVEREKPKCIFLTSPNNPDGSIINDEDLLKI 243
++L+ A+ + K +++ +P NP K+
Sbjct: 141 IKLLEAAI-TPETKLVWIETPTNP---------TQKV 167
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 27.5 bits (61), Expect = 7.3
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 25/92 (27%)
Query: 236 NDEDLLKILE-----MP----ILVVLDEAYTEFSGLESRMEWVKKHDNLIVL-------- 278
+D+ +L+ +P +++V + + + H ++I+L
Sbjct: 273 SDQHCATLLKNCYDALPAHGKVVLV--QCILPVNPEANPSSQGVFHVDMIMLAHNPGGRE 330
Query: 279 RTFS------KRAGLAGLRVGYGAFPLSIIEY 304
R + AG G++ Y IE+
Sbjct: 331 RYEREFQALARGAGFTGVKSTYIYANAWAIEF 362
>1qh4_A Creatine kinase; cancer, cellular energy metabolism, guanidino
kinase, neurodegenerative disorders, transferase; 1.41A
{Gallus gallus} SCOP: a.83.1.1 d.128.1.2 PDB: 3b6r_A*
3drb_A* 3dre_A 1g0w_A 1i0e_A 1u6r_A* 1vrp_A* 2crk_A
Length = 380
Score = 27.5 bits (60), Expect = 7.4
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 208 ELIADAVEREKPKCIFLTSPNNPDGSI-INDEDLLKILEMPILVVLDEAYTEFSGLESRM 266
L+A + R+ P + +N + IN+ED L+++ M + E +T F +++
Sbjct: 200 LLLASGMARDWPDARGIWHNDNKTFLVWINEEDHLRVISMQKGGNMKEVFTRFCTGLTQI 259
Query: 267 EWVKKHDNL 275
E + K N
Sbjct: 260 ETLFKSKNY 268
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural
genomics, seattle structural genomi for infectious
disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Length = 448
Score = 27.3 bits (61), Expect = 7.9
Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 200 KSDFSLNVELIADAVEREKPKCIFLTSP--NNPDGSIINDEDLLKILEM----PILVVLD 253
+ ++ ++ K IFL +NP G + ++L + + D
Sbjct: 182 DGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFD 241
Query: 254 EAYTEF-SG-LES-----RMEWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLW 306
AY F +G E+ RM +V ++V ++FSK GL G R+G L ++
Sbjct: 242 SAYQGFATGSFEADAFAVRM-FVDAGVEVLVAQSFSKNFGLYGERIGC----LHVVHAGV 296
Query: 307 RAKQPYNVSVAAEV 320
N +++A +
Sbjct: 297 EGSVEKNKALSAAM 310
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 27.2 bits (61), Expect = 8.2
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 29/72 (40%)
Query: 269 VKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNV------------SV 316
V++ D +++ AG AG+R ++ +V
Sbjct: 5 VREFDAVVIG------AGGAGMRAALQI-----------SQSGQTCALLSKVFPTRSHTV 47
Query: 317 AAEVAACAALQN 328
+A+ AL N
Sbjct: 48 SAQGGITVALGN 59
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 27.2 bits (61), Expect = 8.8
Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 20/136 (14%)
Query: 108 GPPPEVREALGQ--LKFPYIY-PDPESRRLRAALAKDSGLESDHILV--GCGADELIDLI 162
G PEV +AL + Y D + +++ + + + LV G A+ L
Sbjct: 19 GASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANA---LC 75
Query: 163 MRCVLDPGDKIVDCPPT--FTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVERE- 217
+ + P I C P E A + K+ L++ + + +
Sbjct: 76 LSAMTPPWGNIY-CHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKV 134
Query: 218 ------KPKCIFLTSP 227
+P C+ +T
Sbjct: 135 GDVHTTQPACVSITQA 150
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase,
signal peptid processing, protein translocation; HET:
1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB:
3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Length = 248
Score = 26.8 bits (59), Expect = 9.7
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 155 ADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNG 191
D +D I R V PGDK+ P + + +G
Sbjct: 62 EDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSG 98
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 27.1 bits (61), Expect = 9.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 254 EAYTEFSGLESRMEWVKKHDN 274
+A T F+GL R E V +H+
Sbjct: 291 KALTTFTGLPHRFEVVLEHNG 311
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.406
Gapped
Lambda K H
0.267 0.0773 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,317,696
Number of extensions: 341164
Number of successful extensions: 1154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 949
Number of HSP's successfully gapped: 140
Length of query: 334
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 240
Effective length of database: 4,077,219
Effective search space: 978532560
Effective search space used: 978532560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)