BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019869
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 287 CRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 334
C+ C KE S++ +PC HL +CKDC + CP+C+ +V LS
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTFLS 74
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 287 CRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 334
C+ C KE SV+ +PC HL +C++C + CP+C+ + +V LS
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 277 KSISRNHQM-------ICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFV 324
K IS Q+ +C+ C + +++ +PC HL CK C V CP+C V
Sbjct: 10 KEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTV 64
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 277 KSISRNHQM-------ICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFV 324
K IS Q+ +C+ C + +++ +PC HL CK C V CP+C V
Sbjct: 10 KEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTV 64
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 277 KSISRNHQM-------ICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFV 324
K IS Q+ +C+ C + +++ +PC HL CK C V CP+C V
Sbjct: 11 KEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTV 65
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 287 CRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVC-QFVKNASVL 330
C C+ + +L+PCRH CLC C CP+C QFV+ + L
Sbjct: 18 CVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFAL 62
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 37.0 bits (84), Expect = 0.016, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 287 CRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 334
C+ C + S++ +PC HL +C +C + +CP+C+ + V LS
Sbjct: 16 CKVCLDRAVSIVFVPCGHL-VCAECAPGLQLCPICRAPVRSRVRTFLS 62
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 35.8 bits (81), Expect = 0.035, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 285 MICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQ 322
M+C C +E + PC H C+ C + CPVC+
Sbjct: 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCR 56
>pdb|2WVR|A Chain A, Human Cdt1:geminin Complex
pdb|2WVR|B Chain B, Human Cdt1:geminin Complex
Length = 209
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 15/149 (10%)
Query: 113 RNSSVTSASGSMTAAPPIILSLADNVRTELDRQKEEFDQYIKV--QEEYLAKGVQDMKQR 170
RN +TS T++P +I+ + + +E FD IK +Y K V + +++
Sbjct: 54 RNDHLTST----TSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYW-KEVAEKRRK 108
Query: 171 HMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVN 230
+ L EK L K++++KD EI + ++N+EL E A++ Y A+ E +
Sbjct: 109 ALYEALKENEK-LHKEIEQKDNEIARLKKENKELAEV-------AEHVQYMAELIERLNG 160
Query: 231 LLKSNLQQAISQGADQGKEGFGDSEVDDA 259
N + +Q D +E DS V+D+
Sbjct: 161 EPLDNFESLDNQEFDSEEETVEDSLVEDS 189
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 124 MTAAPPIILSLADNVRTELDRQKEEFDQYIKVQE----EYLAKGVQDMKQRHMASFLSAI 179
M P I +LADNV D+ E Q++K E E+ A ++D + FL +
Sbjct: 460 MPPRPHFITALADNVYQLADKWVE-MAQHLKTTEDFRSEFNAIDIKDFNSNQLVLFLETL 518
Query: 180 EKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 217
+ + KD + +R L++ + ++QN
Sbjct: 519 TQNGHSNKKPKDFDWAKFPVASRALLDIYQDNIVKSQN 556
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 124 MTAAPPIILSLADNVRTELDRQKEEFDQYIKVQE----EYLAKGVQDMKQRHMASFLSAI 179
M P I +LADNV D+ E Q++K E E+ A ++D + FL +
Sbjct: 460 MPPRPHFITALADNVYQLADKWVE-MAQHLKTTEDFRSEFNAIDIKDFNSNQLVLFLETL 518
Query: 180 EKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 217
+ + KD + +R L++ + ++QN
Sbjct: 519 TQNGHSNKKPKDFDWAKFPVASRALLDIYQDNIVKSQN 556
>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
Representative Structure At Ph 7.5, 30 C, In The
Presence Of Zinc
Length = 56
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 287 CRACKAKEASVLLMPCRHLCLCKDC-DVLVAVCPVCQ 322
C+ C+A+ L+PC H LC C + CP+CQ
Sbjct: 9 CQQCQAEAKCPKLLPCLH-TLCSGCLEASGMQCPICQ 44
>pdb|1KCR|L Chain L, Crystal Structure Of Antibody Pc283 In Complex With Ps1
Peptide
Length = 213
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 80 NSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
NS QD AD + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 NSWTAQDSADSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 211
>pdb|1EAP|A Chain A, Crystal Structure Of A Catalytic Antibody With A Serine
Protease Active Site
Length = 213
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 73 QKLQISLNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIIL 132
++ Q LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+
Sbjct: 153 ERAQGVLNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVK 206
Query: 133 SLADN 137
S N
Sbjct: 207 SFNRN 211
>pdb|3V7A|G Chain G, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
pdb|3V7A|H Chain H, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
Length = 215
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 161 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 213
>pdb|1I8M|L Chain L, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1I8M|A Chain A, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1P7K|L Chain L, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1P7K|A Chain A, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1XF2|L Chain L, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF2|A Chain A, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF3|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF3|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF4|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|1XF4|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|2FR4|L Chain L, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
pdb|2FR4|A Chain A, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
Length = 214
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|1KB5|L Chain L, Murine T-Cell Receptor Variable DomainFAB COMPLEX
Length = 214
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|1JGL|L Chain L, Crystal Structure Of Immunoglobulin Fab Fragment Complexed
With 17-Beta-Estradiol
pdb|1JHK|L Chain L, Crystal Structure Of The Anti-Estradiol Antibody 57-2
Length = 214
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|1RU9|L Chain L, Crystal Structure (A) Of U.V.-Irradiated Cationic
Cyclization Antibody 4c6 Fab At Ph 4.6 With A Data Set
Collected In-House.
pdb|1RUA|L Chain L, Crystal Structure (b) Of U.v.-irradiated Cationic
Cyclization Antibody 4c6 Fab At Ph 4.6 With A Data Set
Collected At Ssrl Beamline 11-1.
pdb|1RUL|L Chain L, Crystal Structure (d) Of U.v.-irradiated Cationic
Cyclization Antibody 4c6 Fab At Ph 5.6 With A Data Set
Collected At Ssrl Beamline 11-1.
pdb|1RUM|L Chain L, Crystal Structure (F) Of H2o2-Soaked Cationic Cyclization
Antibody 4c6 Fab At Ph 8.5 With A Data Set Collected At
Ssrl Beamline 9-1
Length = 219
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 165 LNSXTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 217
>pdb|2J88|L Chain L, Hyaluronidase In Complex With A Monoclonal Igg Fab
Fragment
Length = 213
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 159 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 211
>pdb|1MEX|L Chain L, Antibody Catalysis Of A Bimolecular Cycloaddition Reaction
Length = 213
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|1IAI|M Chain M, Idiotype-Anti-Idiotype Fab Complex
pdb|1AIF|L Chain L, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
pdb|1AIF|A Chain A, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
Length = 215
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 161 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 213
>pdb|4AEH|L Chain L, Crystal Structure Of The Anti-Aahi Fab9c2 Antibody
Length = 214
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|2Y0H|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Opdl
Length = 391
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 214 EAQNWHYRAKYNESVVNLLKSNLQQAISQGADQGKEGFGDSEVDDAASYINTNNYLTVPS 273
+ ++W R Y+ + + L NL QG D + G DD+ NT+ + S
Sbjct: 298 QEKSWQLRYDYDFAGLGLPGLNLMTRYVQGRDIDR---GAGRADDSEWERNTDLSYVIQS 354
Query: 274 GPGKSISRNHQMIC 287
GP KS++ + I
Sbjct: 355 GPLKSVALKWRNIT 368
>pdb|2FBJ|L Chain L, Refined Crystal Structure Of The Galactan-Binding
Immunoglobulin Fab J539 At 1.95-Angstroms Resolution
Length = 213
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 159 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 211
>pdb|1WEJ|L Chain L, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
pdb|1QBL|L Chain L, Fab E8 (Fabe8a) X-Ray Structure At 2.26 Angstrom
Resolution
pdb|1QBM|L Chain L, Fab E8b Antibody, X-Ray Structure At 2.37 Angstroms
Resolution
Length = 214
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|3V6O|E Chain E, Leptin Receptor-Antibody Complex
pdb|3V6O|F Chain F, Leptin Receptor-Antibody Complex
pdb|3VG0|L Chain L, Antibody Fab Fragment
Length = 215
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 161 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 213
>pdb|3HZK|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.4)kdo
pdb|3HZM|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo
pdb|3HZV|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.8) Kdo(2.4)kdo
Length = 219
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD+ D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 165 LNSWTDQDKKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 217
>pdb|1FPT|L Chain L, Three-Dimensional Structure Of The Complex Between The Fab
Fragment Of An Neutralizing Antibody For Type 1
Poliovirus And Its Viral Epitope
Length = 219
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 165 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 217
>pdb|3RVT|C Chain C, Structure Of 4c1 Fab In P212121 Space Group
pdb|3RVU|C Chain C, Structure Of 4c1 Fab In C2221 Space Group
pdb|3RVV|C Chain C, Crystal Structure Of Der F 1 Complexed With Fab 4c1
pdb|3RVX|C Chain C, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 213
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|3O0R|L Chain L, Crystal Structure Of Nitric Oxide Reductase From
Pseudomonas Aeruginosa In Complex With Antibody Fragment
Length = 213
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|1CT8|A Chain A, Catalytic Antibody 7c8 Complex
pdb|1CT8|C Chain C, Catalytic Antibody 7c8 Complex
Length = 214
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|3RKD|L Chain L, Hepatitis E Virus E2s Domain (Genotype I) In Complex With
A Neutralizing Antibody
pdb|3RKD|C Chain C, Hepatitis E Virus E2s Domain (Genotype I) In Complex With
A Neutralizing Antibody
Length = 214
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|1IGY|A Chain A, Structure Of Immunoglobulin
pdb|1IGY|C Chain C, Structure Of Immunoglobulin
Length = 213
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 159 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 211
>pdb|1IAI|L Chain L, Idiotype-Anti-Idiotype Fab Complex
Length = 214
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|1IL1|B Chain B, Crystal Structure Of G3-519, An Anti-Hiv Monoclonal
Antibody
Length = 219
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 165 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 217
>pdb|3T0S|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Occk4 (Opdl)
Length = 399
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 214 EAQNWHYRAKYNESVVNLLKSNLQQAISQGADQGKEGFGDSEVDDAASYINTNNYLTVPS 273
+ ++W R Y+ + + L NL QG D + G DD+ NT+ + S
Sbjct: 298 QEKSWQLRYDYDFAGLGLPGLNLMTRYVQGRDIDR---GAGRADDSEWERNTDLSYVIQS 354
Query: 274 GPGKSISRNHQMIC 287
GP KS++ + I
Sbjct: 355 GPLKSVALKWRNIT 368
>pdb|1FDL|L Chain L, Crystallographic Refinement Of The Three-Dimensional
Structure Of The Fab D1.3-Lysozyme Complex At 2.5-
Angstroms Resolution
Length = 214
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|4AL8|L Chain L, Structure Of Dengue Virus Diii In Complex With Fab 2h12
Length = 213
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|3RVW|C Chain C, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 212
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|3V6F|B Chain B, Crystal Structure Of An Anti-hbv E-antigen Monoclonal Fab
Fragment (e6), Unbound
pdb|3V6F|D Chain D, Crystal Structure Of An Anti-hbv E-antigen Monoclonal Fab
Fragment (e6), Unbound
pdb|3V6F|F Chain F, Crystal Structure Of An Anti-hbv E-antigen Monoclonal Fab
Fragment (e6), Unbound
pdb|3V6F|L Chain L, Crystal Structure Of An Anti-hbv E-antigen Monoclonal Fab
Fragment (e6), Unbound
pdb|3V6Z|B Chain B, Crystal Structure Of Hepatitis B Virus E-antigen
pdb|3V6Z|D Chain D, Crystal Structure Of Hepatitis B Virus E-antigen
Length = 219
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 167 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 219
>pdb|2BRR|L Chain L, Complex Of The Neisserial Pora P1.4 Epitope Peptide And
Two Fab-Fragments (Antibody Mn20b9.34)
pdb|2BRR|X Chain X, Complex Of The Neisserial Pora P1.4 Epitope Peptide And
Two Fab-Fragments (Antibody Mn20b9.34)
Length = 215
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 161 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 213
>pdb|3MBX|L Chain L, Crystal Structure Of Chimeric Antibody X836
Length = 220
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 166 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 218
>pdb|2AEP|L Chain L, An Epidemiologically Significant Epitope Of A 1998
Influenza Virus Neuraminidase Forms A Highly Hydrated
Interface In The Na-Antibody Complex
Length = 214
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|2AEQ|L Chain L, An Epidemiologically Significant Epitope Of A 1998
Influenza Virus Neuraminidase Forms A Highly Hydrated
Interface In The Na-Antibody Complex
Length = 214
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|3Q3G|C Chain C, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3Q3G|A Chain A, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3Q3G|F Chain F, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3Q3G|J Chain J, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|C Chain C, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|A Chain A, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|F Chain F, Crystal Structure Of A-Domain In Complex With Antibody
pdb|3QA3|J Chain J, Crystal Structure Of A-Domain In Complex With Antibody
Length = 220
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 166 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 218
>pdb|4A05|A Chain A, Structure Of The Catalytic Core Domain Of The
Cellobiohydrolase, Cel6a, From Chaetomium Thermophilum
Length = 364
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 90 RSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADNVRTELDRQKEEF 149
R+A+ NP G+ + YD +R+ + +++G + I + A+N + +DR +E
Sbjct: 70 RAANQRGANPPYAGIFVVYDLPDRDCAAAASNGEWS----IANNGANNYKRYIDRIRELL 125
Query: 150 DQY------IKVQEEYLAKGVQDM 167
QY + ++ + LA V +M
Sbjct: 126 IQYSDIRTILVIEPDSLANMVTNM 149
>pdb|3S88|L Chain L, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Gulu) Bound To 16f6
pdb|3VE0|B Chain B, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Boniface) Bound To 16f6
Length = 212
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|1LO0|X Chain X, Catalytic Retro-Diels-Alderase Transition State Analogue
Complex
pdb|1LO0|L Chain L, Catalytic Retro-Diels-Alderase Transition State Analogue
Complex
pdb|1LO2|X Chain X, Retro-Diels-Alderase Catalytic Antibody
pdb|1LO2|L Chain L, Retro-Diels-Alderase Catalytic Antibody
pdb|1LO3|X Chain X, Retro-Diels-Alderase Catalytic Antibody: Product Analogue
pdb|1LO3|L Chain L, Retro-Diels-Alderase Catalytic Antibody: Product Analogue
Length = 219
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 165 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 217
>pdb|3IXX|H Chain H, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXX|J Chain J, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXY|H Chain H, The Pseudo-Atomic Structure Of Dengue Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXY|J Chain J, The Pseudo-Atomic Structure Of Dengue Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
Length = 215
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 161 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 213
>pdb|1CLZ|L Chain L, Igg Fab (Igg3, Kappa) Fragment (Mbr96) Complexed With
Lewis Y Nonoate Methyl Ester
Length = 219
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 165 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 217
>pdb|4DVB|B Chain B, The Crystal Structure Of The Fab Fragment Of Pro-upa
Antibody Mab-112
pdb|4DVB|L Chain L, The Crystal Structure Of The Fab Fragment Of Pro-upa
Antibody Mab-112
pdb|4DW2|L Chain L, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 215
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 161 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 213
>pdb|1A0Q|L Chain L, 29g11 Complexed With Phenyl [1-(1-N-Succinylamino)pentyl]
Phosphonate
Length = 212
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 159 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 211
>pdb|3IFO|L Chain L, X-Ray Structure Of Amyloid Beta Peptide:antibody (Abeta1-
7:10d5) Complex
pdb|3IFO|B Chain B, X-Ray Structure Of Amyloid Beta Peptide:antibody (Abeta1-
7:10d5) Complex
Length = 219
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 79 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 137
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 165 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,513,344
Number of Sequences: 62578
Number of extensions: 375689
Number of successful extensions: 1439
Number of sequences better than 100.0: 298
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 284
Number of HSP's that attempted gapping in prelim test: 1422
Number of HSP's gapped (non-prelim): 298
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)