Query 019869
Match_columns 334
No_of_seqs 262 out of 1156
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:11:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1100 Predicted E3 ubiquitin 100.0 5.3E-36 1.2E-40 274.8 10.5 186 137-333 15-207 (207)
2 KOG4265 Predicted E3 ubiquitin 99.2 3E-12 6.5E-17 124.9 1.9 51 283-333 289-343 (349)
3 PF13920 zf-C3HC4_3: Zinc fing 99.0 7.4E-11 1.6E-15 84.8 1.9 45 284-328 2-50 (50)
4 KOG4172 Predicted E3 ubiquitin 99.0 2.1E-11 4.5E-16 89.9 -3.6 50 285-334 8-62 (62)
5 KOG4275 Predicted E3 ubiquitin 98.8 4.3E-10 9.3E-15 107.5 -1.4 52 283-334 299-350 (350)
6 KOG1571 Predicted E3 ubiquitin 98.8 1.2E-09 2.5E-14 107.1 0.4 53 282-334 303-355 (355)
7 KOG0978 E3 ubiquitin ligase in 98.5 5.3E-07 1.1E-11 95.5 11.9 52 281-333 640-698 (698)
8 PLN03208 E3 ubiquitin-protein 97.7 2.9E-05 6.4E-10 71.1 4.4 49 283-332 17-87 (193)
9 PF14634 zf-RING_5: zinc-RING 97.7 2.1E-05 4.6E-10 55.1 2.2 36 287-323 2-44 (44)
10 KOG1785 Tyrosine kinase negati 97.7 1.4E-05 2.9E-10 79.9 1.0 50 282-332 367-422 (563)
11 PF13923 zf-C3HC4_2: Zinc fing 97.6 2E-05 4.3E-10 53.8 1.2 34 287-321 1-39 (39)
12 KOG0823 Predicted E3 ubiquitin 97.6 3.6E-05 7.8E-10 72.0 3.2 49 283-332 46-103 (230)
13 PHA02929 N1R/p28-like protein; 97.6 5.2E-05 1.1E-09 71.7 3.9 47 284-331 174-232 (238)
14 smart00184 RING Ring finger. E 97.4 0.00011 2.4E-09 47.6 2.3 34 287-321 1-39 (39)
15 PF13639 zf-RING_2: Ring finge 97.4 6E-05 1.3E-09 52.5 1.0 36 286-322 2-44 (44)
16 KOG0317 Predicted E3 ubiquitin 97.4 9.1E-05 2E-09 71.3 2.2 48 283-331 238-289 (293)
17 cd00162 RING RING-finger (Real 97.3 0.00021 4.4E-09 48.0 2.8 39 286-325 1-45 (45)
18 KOG0320 Predicted E3 ubiquitin 97.2 0.00011 2.3E-09 66.5 1.0 49 284-333 131-187 (187)
19 TIGR00599 rad18 DNA repair pro 97.1 0.00022 4.7E-09 72.0 1.9 48 279-327 21-72 (397)
20 PF14447 Prok-RING_4: Prokaryo 97.1 0.00022 4.8E-09 52.9 1.4 44 283-327 6-51 (55)
21 PF00097 zf-C3HC4: Zinc finger 97.1 0.00022 4.8E-09 48.6 1.2 34 287-321 1-41 (41)
22 PF15227 zf-C3HC4_4: zinc fing 96.7 0.00084 1.8E-08 46.9 1.8 34 287-321 1-42 (42)
23 KOG2164 Predicted E3 ubiquitin 96.7 0.00078 1.7E-08 69.3 2.1 43 284-327 186-237 (513)
24 KOG2177 Predicted E3 ubiquitin 96.6 0.00063 1.4E-08 61.4 0.7 41 282-323 11-55 (386)
25 PHA02926 zinc finger-like prot 96.6 0.00077 1.7E-08 63.1 0.8 47 282-329 168-233 (242)
26 PF13445 zf-RING_UBOX: RING-ty 96.4 0.0012 2.5E-08 46.7 0.9 27 287-315 1-31 (43)
27 COG5574 PEX10 RING-finger-cont 96.4 0.0012 2.6E-08 63.0 1.1 42 283-325 214-261 (271)
28 smart00504 Ubox Modified RING 96.3 0.0027 5.8E-08 46.7 2.5 41 285-326 2-46 (63)
29 COG5432 RAD18 RING-finger-cont 96.3 0.0016 3.5E-08 63.1 1.4 46 280-326 21-70 (391)
30 COG5236 Uncharacterized conser 96.0 0.0049 1.1E-07 61.1 2.9 47 282-329 59-111 (493)
31 KOG0287 Postreplication repair 95.8 0.0023 5E-08 63.2 0.0 48 280-328 19-70 (442)
32 KOG4692 Predicted E3 ubiquitin 95.2 0.0067 1.4E-07 60.3 0.9 45 282-327 420-468 (489)
33 COG5540 RING-finger-containing 95.1 0.015 3.3E-07 56.8 2.8 43 283-326 322-372 (374)
34 KOG0802 E3 ubiquitin ligase [P 94.2 0.018 4E-07 60.2 1.0 43 283-326 290-341 (543)
35 PF12678 zf-rbx1: RING-H2 zinc 93.7 0.046 9.9E-07 42.4 2.2 27 295-322 43-73 (73)
36 PF14835 zf-RING_6: zf-RING of 93.7 0.019 4.1E-07 44.1 0.1 44 281-325 4-50 (65)
37 COG5243 HRD1 HRD ubiquitin lig 93.4 0.042 9.2E-07 55.1 2.0 43 282-325 285-344 (491)
38 KOG2879 Predicted E3 ubiquitin 93.0 0.085 1.9E-06 51.0 3.3 44 282-326 237-287 (298)
39 PF04641 Rtf2: Rtf2 RING-finge 92.7 0.1 2.3E-06 49.7 3.5 45 282-327 111-162 (260)
40 KOG1813 Predicted E3 ubiquitin 92.4 0.046 1E-06 53.2 0.6 46 285-331 242-291 (313)
41 KOG2113 Predicted RNA binding 92.0 0.13 2.8E-06 50.7 3.2 51 281-331 340-392 (394)
42 KOG4628 Predicted E3 ubiquitin 91.6 0.12 2.7E-06 51.5 2.5 43 285-328 230-280 (348)
43 COG5152 Uncharacterized conser 91.6 0.052 1.1E-06 50.4 -0.1 46 285-331 197-246 (259)
44 KOG3039 Uncharacterized conser 91.1 0.15 3.3E-06 48.8 2.5 44 283-327 220-271 (303)
45 KOG4159 Predicted E3 ubiquitin 90.1 0.14 3E-06 52.0 1.4 45 282-327 82-130 (398)
46 KOG1814 Predicted E3 ubiquitin 89.9 0.15 3.1E-06 51.9 1.3 42 283-325 183-239 (445)
47 KOG0825 PHD Zn-finger protein 89.3 0.11 2.3E-06 56.6 -0.2 47 284-331 123-176 (1134)
48 PF09726 Macoilin: Transmembra 89.2 15 0.00033 40.1 16.0 53 186-238 546-598 (697)
49 KOG0804 Cytoplasmic Zn-finger 88.9 20 0.00043 37.3 15.6 80 148-227 340-424 (493)
50 KOG1039 Predicted E3 ubiquitin 88.0 0.25 5.5E-06 49.3 1.6 47 282-329 159-224 (344)
51 KOG3002 Zn finger protein [Gen 86.6 0.36 7.9E-06 47.3 1.7 44 282-327 46-92 (299)
52 KOG0288 WD40 repeat protein Ti 86.2 22 0.00047 36.7 13.9 71 141-215 3-78 (459)
53 PF04564 U-box: U-box domain; 85.5 0.77 1.7E-05 35.4 2.7 44 283-327 3-51 (73)
54 KOG0828 Predicted E3 ubiquitin 84.6 0.34 7.3E-06 50.4 0.4 46 281-327 568-635 (636)
55 KOG2932 E3 ubiquitin ligase in 84.6 0.39 8.5E-06 47.4 0.8 42 284-326 90-134 (389)
56 KOG1103 Predicted coiled-coil 84.4 20 0.00044 36.3 12.6 40 134-173 136-185 (561)
57 KOG1001 Helicase-like transcri 84.3 0.38 8.2E-06 52.0 0.7 40 285-326 455-500 (674)
58 COG5220 TFB3 Cdk activating ki 84.3 0.28 6E-06 46.9 -0.3 40 283-323 9-61 (314)
59 PF15619 Lebercilin: Ciliary p 84.2 35 0.00075 31.5 14.4 93 140-238 50-150 (194)
60 PF04710 Pellino: Pellino; In 84.0 0.33 7E-06 49.2 0.0 50 284-333 328-411 (416)
61 KOG0980 Actin-binding protein 83.1 45 0.00098 37.5 15.5 49 191-239 458-506 (980)
62 KOG4657 Uncharacterized conser 83.1 44 0.00095 31.9 15.6 90 129-220 11-100 (246)
63 PF01166 TSC22: TSC-22/dip/bun 82.4 2 4.4E-05 32.4 3.7 32 192-223 14-45 (59)
64 PF12329 TMF_DNA_bd: TATA elem 82.2 14 0.00031 28.8 8.6 57 183-239 3-59 (74)
65 KOG1941 Acetylcholine receptor 82.1 7.5 0.00016 39.8 8.7 150 139-324 252-414 (518)
66 PF00038 Filament: Intermediat 81.7 50 0.0011 31.6 16.5 97 140-240 180-282 (312)
67 PF12126 DUF3583: Protein of u 81.5 52 0.0011 32.6 13.8 43 136-182 23-65 (324)
68 PF13935 Ead_Ea22: Ead/Ea22-li 80.6 15 0.00033 31.8 9.2 70 128-205 66-139 (139)
69 COG1579 Zn-ribbon protein, pos 80.3 27 0.00059 33.4 11.4 36 282-324 195-230 (239)
70 KOG0311 Predicted E3 ubiquitin 79.4 0.2 4.3E-06 50.1 -3.3 47 281-328 40-92 (381)
71 PF05290 Baculo_IE-1: Baculovi 78.9 0.89 1.9E-05 39.8 0.9 45 284-329 80-135 (140)
72 PF06785 UPF0242: Uncharacteri 78.7 41 0.0009 33.9 12.4 38 204-241 139-176 (401)
73 PF12325 TMF_TATA_bd: TATA ele 78.6 42 0.0009 28.8 14.5 94 133-240 16-109 (120)
74 PRK10884 SH3 domain-containing 76.9 61 0.0013 30.2 12.5 32 185-216 125-156 (206)
75 PF12240 Angiomotin_C: Angiomo 76.6 36 0.00078 31.9 10.7 77 150-235 71-165 (205)
76 PF06005 DUF904: Protein of un 76.3 35 0.00076 26.7 11.2 25 199-223 39-63 (72)
77 PF09755 DUF2046: Uncharacteri 75.7 89 0.0019 31.1 15.6 58 184-241 83-149 (310)
78 KOG4005 Transcription factor X 75.6 39 0.00084 32.6 10.8 35 190-224 88-122 (292)
79 PF14362 DUF4407: Domain of un 75.2 80 0.0017 30.3 13.5 50 166-215 116-165 (301)
80 TIGR02680 conserved hypothetic 74.9 96 0.0021 36.6 16.0 9 10-18 44-52 (1353)
81 KOG4571 Activating transcripti 74.8 13 0.00029 36.4 7.7 32 192-223 255-286 (294)
82 PF11559 ADIP: Afadin- and alp 74.6 31 0.00066 29.9 9.4 35 187-221 61-95 (151)
83 KOG4797 Transcriptional regula 74.4 17 0.00036 30.9 7.2 33 192-224 67-99 (123)
84 KOG3842 Adaptor protein Pellin 74.3 2.9 6.3E-05 41.6 3.1 51 283-333 340-424 (429)
85 PRK10884 SH3 domain-containing 74.2 50 0.0011 30.7 11.2 39 186-224 119-157 (206)
86 PF04799 Fzo_mitofusin: fzo-li 73.9 29 0.00063 31.6 9.2 79 150-239 78-163 (171)
87 PF15254 CCDC14: Coiled-coil d 73.8 38 0.00082 37.5 11.5 27 187-213 531-557 (861)
88 PF07888 CALCOCO1: Calcium bin 72.6 1.4E+02 0.003 32.0 15.1 46 186-231 200-245 (546)
89 PF10272 Tmpp129: Putative tra 72.1 3.2 6.9E-05 41.8 2.9 34 281-325 300-350 (358)
90 PF08614 ATG16: Autophagy prot 72.1 21 0.00046 32.3 8.1 19 138-156 72-90 (194)
91 COG3074 Uncharacterized protei 71.9 31 0.00066 27.2 7.6 32 193-224 40-71 (79)
92 PF11544 Spc42p: Spindle pole 71.3 36 0.00078 27.1 8.0 38 183-220 10-47 (76)
93 COG4985 ABC-type phosphate tra 71.1 27 0.00058 33.6 8.6 20 135-154 159-178 (289)
94 PF13747 DUF4164: Domain of un 70.8 55 0.0012 26.5 11.4 49 188-236 35-83 (89)
95 KOG1002 Nucleotide excision re 70.3 1.2 2.6E-05 46.9 -0.5 42 283-325 535-585 (791)
96 PF13815 Dzip-like_N: Iguana/D 70.1 20 0.00044 30.1 7.0 40 176-215 78-117 (118)
97 KOG2113 Predicted RNA binding 70.1 1.7 3.7E-05 43.1 0.5 48 283-330 135-187 (394)
98 PF07111 HCR: Alpha helical co 69.6 1.7E+02 0.0036 32.4 15.0 24 190-213 160-183 (739)
99 PRK09039 hypothetical protein; 69.4 1.3E+02 0.0027 30.1 14.6 55 188-242 133-187 (343)
100 PF04216 FdhE: Protein involve 69.4 2.8 6E-05 40.4 1.8 48 284-332 172-228 (290)
101 KOG0612 Rho-associated, coiled 69.2 85 0.0018 36.6 13.3 88 148-240 465-552 (1317)
102 TIGR01837 PHA_granule_1 poly(h 69.0 65 0.0014 27.2 9.9 64 149-212 46-116 (118)
103 PRK00888 ftsB cell division pr 68.8 17 0.00036 30.3 6.1 37 185-221 27-63 (105)
104 KOG4673 Transcription factor T 68.7 84 0.0018 34.7 12.5 55 180-237 472-526 (961)
105 PF00170 bZIP_1: bZIP transcri 68.5 46 0.001 24.7 8.2 19 202-220 29-47 (64)
106 smart00744 RINGv The RING-vari 67.6 4.5 9.7E-05 29.1 2.1 36 286-322 1-49 (49)
107 PRK11637 AmiB activator; Provi 67.6 1.5E+02 0.0031 30.2 13.8 27 187-213 91-117 (428)
108 COG3937 Uncharacterized conser 67.6 19 0.00041 30.4 6.1 42 164-207 62-105 (108)
109 PF14775 NYD-SP28_assoc: Sperm 67.2 42 0.00091 25.3 7.4 48 154-210 11-58 (60)
110 PF14570 zf-RING_4: RING/Ubox 67.2 2.4 5.3E-05 30.8 0.7 25 300-325 18-47 (48)
111 KOG0977 Nuclear envelope prote 67.0 1.3E+02 0.0029 32.2 13.6 60 157-216 115-179 (546)
112 COG2433 Uncharacterized conser 66.7 50 0.0011 35.7 10.4 12 102-113 332-343 (652)
113 KOG0297 TNF receptor-associate 66.7 2.8 6E-05 42.5 1.2 49 281-330 18-71 (391)
114 PF09726 Macoilin: Transmembra 66.2 1.8E+02 0.0039 32.0 14.9 34 204-237 543-576 (697)
115 KOG3091 Nuclear pore complex, 65.7 64 0.0014 34.0 10.7 50 192-243 376-427 (508)
116 smart00338 BRLZ basic region l 65.4 53 0.0011 24.4 7.7 28 190-217 31-58 (65)
117 PRK02119 hypothetical protein; 64.9 50 0.0011 25.7 7.7 49 194-242 4-52 (73)
118 PF10367 Vps39_2: Vacuolar sor 64.6 3.5 7.7E-05 32.9 1.3 30 283-313 77-108 (109)
119 PF10234 Cluap1: Clusterin-ass 64.3 1.5E+02 0.0032 29.0 14.2 57 147-205 161-217 (267)
120 PF10205 KLRAQ: Predicted coil 64.2 86 0.0019 26.3 9.4 51 153-212 10-60 (102)
121 PF06156 DUF972: Protein of un 63.4 78 0.0017 26.5 9.1 37 186-222 16-52 (107)
122 PRK04863 mukB cell division pr 63.1 2.5E+02 0.0053 33.8 16.0 29 191-219 368-396 (1486)
123 PF00804 Syntaxin: Syntaxin; 62.2 72 0.0016 24.7 9.7 59 156-216 15-73 (103)
124 PF15290 Syntaphilin: Golgi-lo 61.9 77 0.0017 31.2 9.9 35 170-208 71-105 (305)
125 smart00338 BRLZ basic region l 60.7 67 0.0014 23.8 9.1 37 200-236 27-63 (65)
126 PF05121 GvpK: Gas vesicle pro 60.5 42 0.00091 27.4 6.7 38 177-214 27-67 (88)
127 TIGR03752 conj_TIGR03752 integ 60.0 97 0.0021 32.5 10.9 33 138-171 64-96 (472)
128 PF04111 APG6: Autophagy prote 59.9 1.8E+02 0.0039 28.6 12.4 47 176-222 55-102 (314)
129 PRK04406 hypothetical protein; 58.9 85 0.0018 24.6 8.1 47 196-242 8-54 (75)
130 PF12761 End3: Actin cytoskele 58.7 24 0.00052 32.8 5.7 24 193-216 97-120 (195)
131 KOG0994 Extracellular matrix g 58.7 3E+02 0.0065 32.5 14.9 19 195-213 1615-1633(1758)
132 PRK15422 septal ring assembly 58.6 83 0.0018 25.2 7.9 32 193-224 40-71 (79)
133 PF15397 DUF4618: Domain of un 58.6 1.8E+02 0.0039 28.2 13.2 29 192-220 193-221 (258)
134 PRK11637 AmiB activator; Provi 58.5 1.5E+02 0.0033 30.0 12.1 27 187-213 98-124 (428)
135 PF12861 zf-Apc11: Anaphase-pr 58.0 8.7 0.00019 31.2 2.4 41 285-326 33-82 (85)
136 PF07412 Geminin: Geminin; In 57.1 49 0.0011 30.9 7.4 48 158-206 106-153 (200)
137 smart00787 Spc7 Spc7 kinetocho 57.0 1.4E+02 0.003 29.6 11.1 96 139-242 188-286 (312)
138 PF03854 zf-P11: P-11 zinc fin 56.6 4.3 9.4E-05 29.6 0.4 41 286-329 4-49 (50)
139 KOG2008 BTK-associated SH3-dom 55.2 2.4E+02 0.0052 28.5 14.9 34 183-216 132-172 (426)
140 PF10174 Cast: RIM-binding pro 55.0 3.5E+02 0.0075 30.3 15.2 85 154-240 321-405 (775)
141 COG4942 Membrane-bound metallo 54.7 1.4E+02 0.0031 30.9 11.0 73 166-242 37-109 (420)
142 PF06657 Cep57_MT_bd: Centroso 54.6 1E+02 0.0022 24.3 8.0 22 132-153 9-30 (79)
143 PF15066 CAGE1: Cancer-associa 54.4 2.9E+02 0.0063 29.2 13.2 59 185-243 453-526 (527)
144 KOG0971 Microtubule-associated 54.1 2.2E+02 0.0048 32.6 12.7 50 191-240 447-503 (1243)
145 KOG3859 Septins (P-loop GTPase 54.0 2.4E+02 0.0053 28.3 12.4 51 164-214 324-377 (406)
146 PF14282 FlxA: FlxA-like prote 53.9 62 0.0014 26.8 7.0 52 191-242 18-73 (106)
147 KOG0163 Myosin class VI heavy 53.8 3.7E+02 0.0081 30.4 14.2 24 193-216 957-980 (1259)
148 PF00038 Filament: Intermediat 53.5 2.1E+02 0.0045 27.3 15.9 64 173-236 243-306 (312)
149 PF09730 BicD: Microtubule-ass 53.2 3.6E+02 0.0077 30.0 14.3 40 139-178 47-99 (717)
150 TIGR03319 YmdA_YtgF conserved 52.9 3E+02 0.0066 29.1 15.4 9 295-303 244-252 (514)
151 PRK12704 phosphodiesterase; Pr 52.9 3.1E+02 0.0066 29.1 15.5 8 295-302 250-257 (520)
152 PF04380 BMFP: Membrane fusoge 52.4 1.1E+02 0.0025 24.0 8.1 17 143-159 23-39 (79)
153 PRK13169 DNA replication intia 52.3 1.1E+02 0.0025 25.8 8.3 37 187-223 17-53 (110)
154 PF14193 DUF4315: Domain of un 52.0 72 0.0016 25.7 6.7 28 187-214 3-30 (83)
155 PF11932 DUF3450: Protein of u 51.4 1.7E+02 0.0037 27.4 10.4 18 193-210 64-81 (251)
156 KOG1029 Endocytic adaptor prot 51.4 2.3E+02 0.0051 31.9 12.3 8 193-200 404-411 (1118)
157 PRK09039 hypothetical protein; 50.6 2.7E+02 0.0058 27.8 15.7 42 187-228 139-180 (343)
158 PF13874 Nup54: Nucleoporin co 50.4 1.7E+02 0.0036 25.3 9.4 88 136-242 33-122 (141)
159 PF05600 DUF773: Protein of un 50.4 3.3E+02 0.0072 28.8 13.5 56 185-240 439-494 (507)
160 KOG2660 Locus-specific chromos 50.3 4 8.6E-05 40.6 -0.9 47 282-329 13-64 (331)
161 COG4372 Uncharacterized protei 50.2 3.1E+02 0.0068 28.4 15.6 79 136-216 77-161 (499)
162 PF04859 DUF641: Plant protein 50.2 65 0.0014 28.1 6.7 39 174-212 87-128 (131)
163 PF12718 Tropomyosin_1: Tropom 50.1 1.8E+02 0.0038 25.5 13.1 62 177-239 73-134 (143)
164 COG5175 MOT2 Transcriptional r 50.0 6.3 0.00014 39.6 0.5 41 286-327 16-65 (480)
165 KOG4445 Uncharacterized conser 50.0 4.3 9.3E-05 40.1 -0.7 42 284-326 115-186 (368)
166 KOG1734 Predicted RING-contain 49.6 6.9 0.00015 38.2 0.6 43 283-326 223-281 (328)
167 PF07888 CALCOCO1: Calcium bin 49.3 3.7E+02 0.0079 28.9 15.4 18 184-201 219-236 (546)
168 PRK00888 ftsB cell division pr 49.1 57 0.0012 27.1 6.0 27 187-213 36-62 (105)
169 TIGR01562 FdhE formate dehydro 49.0 60 0.0013 32.1 7.1 41 284-325 184-234 (305)
170 KOG3564 GTPase-activating prot 49.0 2.2E+02 0.0048 30.3 11.3 47 155-210 28-74 (604)
171 KOG0249 LAR-interacting protei 48.6 1.5E+02 0.0033 32.9 10.4 84 153-240 168-257 (916)
172 PF11180 DUF2968: Protein of u 48.4 2.3E+02 0.005 26.4 12.3 77 160-240 105-181 (192)
173 PF12329 TMF_DNA_bd: TATA elem 47.9 81 0.0018 24.6 6.3 43 197-239 3-45 (74)
174 PF08614 ATG16: Autophagy prot 47.6 1.8E+02 0.0038 26.4 9.5 16 201-216 160-175 (194)
175 PF04102 SlyX: SlyX; InterPro 47.4 1.3E+02 0.0027 23.0 7.3 24 220-243 25-48 (69)
176 KOG0241 Kinesin-like protein [ 47.3 93 0.002 35.8 8.7 44 176-219 380-424 (1714)
177 PRK00286 xseA exodeoxyribonucl 47.1 3.2E+02 0.007 27.7 14.7 32 169-200 311-342 (438)
178 cd00729 rubredoxin_SM Rubredox 46.3 6.7 0.00014 26.2 0.0 16 315-330 18-33 (34)
179 PF12128 DUF3584: Protein of u 46.3 4.2E+02 0.0091 30.9 14.3 66 147-213 724-792 (1201)
180 PF10198 Ada3: Histone acetylt 46.0 1.7E+02 0.0037 25.4 8.6 58 180-241 35-92 (131)
181 PF11500 Cut12: Spindle pole b 45.8 2E+02 0.0043 25.8 9.2 26 188-213 101-126 (152)
182 KOG3161 Predicted E3 ubiquitin 45.8 6.4 0.00014 42.6 -0.2 42 283-326 10-57 (861)
183 PF04977 DivIC: Septum formati 45.7 76 0.0017 23.8 5.9 32 187-218 19-50 (80)
184 PF11944 DUF3461: Protein of u 45.7 65 0.0014 27.9 5.9 54 137-196 71-124 (125)
185 KOG4023 Uncharacterized conser 45.6 12 0.00025 31.5 1.3 33 4-36 60-98 (108)
186 PF14662 CCDC155: Coiled-coil 45.2 2.6E+02 0.0057 26.0 12.5 46 189-234 64-109 (193)
187 PRK00409 recombination and DNA 45.2 3.9E+02 0.0085 29.8 13.3 13 142-154 511-523 (782)
188 PF15070 GOLGA2L5: Putative go 45.1 4.4E+02 0.0096 28.7 14.2 80 132-213 157-244 (617)
189 PF10217 DUF2039: Uncharacteri 45.0 5.9 0.00013 32.6 -0.5 42 278-324 49-90 (92)
190 PF10083 DUF2321: Uncharacteri 44.8 8.4 0.00018 34.6 0.4 25 307-331 30-55 (158)
191 COG1592 Rubrerythrin [Energy p 44.8 8.4 0.00018 34.9 0.4 30 284-329 134-163 (166)
192 KOG3976 Mitochondrial F1F0-ATP 44.6 3E+02 0.0065 26.6 12.8 89 142-230 112-207 (247)
193 PF04849 HAP1_N: HAP1 N-termin 44.5 3.3E+02 0.0072 27.1 16.4 94 147-240 173-282 (306)
194 PF12718 Tropomyosin_1: Tropom 44.4 2.2E+02 0.0047 24.9 11.8 53 170-226 17-69 (143)
195 cd07665 BAR_SNX1 The Bin/Amphi 44.4 2.9E+02 0.0062 26.3 13.5 80 145-227 88-180 (234)
196 COG4306 Uncharacterized protei 44.2 9.4 0.0002 33.4 0.6 25 307-331 30-55 (160)
197 KOG2391 Vacuolar sorting prote 44.2 2.2E+02 0.0049 28.8 10.1 29 19-47 41-70 (365)
198 PF08700 Vps51: Vps51/Vps67; 44.1 1.5E+02 0.0032 22.8 10.1 36 146-181 24-59 (87)
199 KOG3119 Basic region leucine z 43.7 1.2E+02 0.0027 29.1 8.3 33 202-234 218-250 (269)
200 PLN02189 cellulose synthase 43.7 15 0.00033 41.7 2.2 44 283-326 33-87 (1040)
201 PF08317 Spc7: Spc7 kinetochor 43.2 3.3E+02 0.0072 26.7 13.2 54 187-240 211-264 (325)
202 PHA03415 putative internal vir 42.9 82 0.0018 35.3 7.5 86 136-221 299-397 (1019)
203 PRK10920 putative uroporphyrin 42.6 3.9E+02 0.0085 27.4 13.4 40 181-220 95-135 (390)
204 PHA02562 46 endonuclease subun 42.6 4E+02 0.0087 27.5 15.1 34 185-218 213-246 (562)
205 KOG2817 Predicted E3 ubiquitin 42.4 11 0.00023 38.5 0.8 41 283-325 333-384 (394)
206 COG2433 Uncharacterized conser 41.9 1E+02 0.0023 33.4 7.9 16 225-240 479-494 (652)
207 KOG4796 RNA polymerase II elon 41.2 83 0.0018 33.6 7.0 86 151-243 493-590 (604)
208 KOG0977 Nuclear envelope prote 41.2 4.9E+02 0.011 28.0 14.3 47 170-216 144-193 (546)
209 PF03980 Nnf1: Nnf1 ; InterPr 41.0 60 0.0013 26.6 4.9 41 176-216 64-104 (109)
210 PF10226 DUF2216: Uncharacteri 40.8 3.1E+02 0.0066 25.6 12.4 68 150-227 23-104 (195)
211 PRK13677 hypothetical protein; 40.3 84 0.0018 27.2 5.7 54 138-197 72-125 (125)
212 PRK13729 conjugal transfer pil 40.3 85 0.0018 33.0 6.9 26 192-217 90-115 (475)
213 PF15070 GOLGA2L5: Putative go 40.3 5.2E+02 0.011 28.1 14.0 16 146-161 110-125 (617)
214 PF12999 PRKCSH-like: Glucosid 40.1 2.2E+02 0.0048 26.1 8.8 18 197-214 151-168 (176)
215 PF04156 IncA: IncA protein; 39.8 2.7E+02 0.0058 24.6 14.8 21 192-212 130-150 (191)
216 KOG4466 Component of histone d 39.7 3.7E+02 0.0081 26.5 10.7 18 200-217 117-134 (291)
217 PF08702 Fib_alpha: Fibrinogen 39.7 2.6E+02 0.0057 24.5 11.3 49 137-189 22-72 (146)
218 PRK11448 hsdR type I restricti 39.3 1E+02 0.0023 35.7 8.0 21 196-216 188-208 (1123)
219 PF10186 Atg14: UV radiation r 39.3 3.2E+02 0.007 25.4 16.4 11 144-154 38-48 (302)
220 KOG1029 Endocytic adaptor prot 39.1 6.3E+02 0.014 28.7 14.4 23 193-216 394-416 (1118)
221 PF10158 LOH1CR12: Tumour supp 38.7 2.6E+02 0.0057 24.2 10.7 77 160-241 32-108 (131)
222 TIGR03752 conj_TIGR03752 integ 38.6 1.7E+02 0.0038 30.7 8.8 11 155-165 66-76 (472)
223 PRK14140 heat shock protein Gr 38.3 1E+02 0.0023 28.4 6.5 20 146-166 36-55 (191)
224 PF07716 bZIP_2: Basic region 38.3 1.5E+02 0.0032 21.3 8.2 23 191-213 31-53 (54)
225 PF05278 PEARLI-4: Arabidopsis 38.1 4E+02 0.0086 26.1 13.9 21 202-222 210-230 (269)
226 smart00503 SynN Syntaxin N-ter 38.1 2.1E+02 0.0045 22.9 11.1 49 192-240 50-102 (117)
227 KOG4552 Vitamin-D-receptor int 38.0 3.7E+02 0.0079 25.7 10.7 10 296-305 240-249 (272)
228 PF05911 DUF869: Plant protein 37.9 5.4E+02 0.012 28.9 12.9 35 203-237 124-158 (769)
229 PHA02562 46 endonuclease subun 37.8 4.8E+02 0.01 26.9 13.4 77 137-214 306-387 (562)
230 KOG3113 Uncharacterized conser 37.5 27 0.00059 33.9 2.6 47 283-330 110-162 (293)
231 COG1196 Smc Chromosome segrega 37.3 7.2E+02 0.016 28.9 15.9 33 185-217 260-292 (1163)
232 PF10168 Nup88: Nuclear pore c 37.3 6.1E+02 0.013 28.1 15.5 50 193-242 601-661 (717)
233 KOG0250 DNA repair protein RAD 37.2 7.3E+02 0.016 28.9 15.3 56 185-240 394-456 (1074)
234 PF11471 Sugarporin_N: Maltopo 37.0 72 0.0016 24.1 4.3 27 197-223 30-56 (60)
235 PRK04863 mukB cell division pr 36.8 8.4E+02 0.018 29.5 16.5 51 188-238 351-401 (1486)
236 PF05266 DUF724: Protein of un 36.2 3.5E+02 0.0075 24.9 13.9 46 187-239 126-171 (190)
237 KOG2129 Uncharacterized conser 35.9 3.9E+02 0.0084 28.1 10.5 30 152-181 257-286 (552)
238 KOG1916 Nuclear protein, conta 35.8 7.6E+02 0.016 28.7 14.0 23 136-158 879-901 (1283)
239 PF03194 LUC7: LUC7 N_terminus 35.7 3E+02 0.0064 26.4 9.4 91 134-241 80-170 (254)
240 PF15290 Syntaphilin: Golgi-lo 35.5 4.5E+02 0.0098 26.0 10.6 24 157-180 91-114 (305)
241 PF05008 V-SNARE: Vesicle tran 35.0 2E+02 0.0043 21.8 9.9 30 189-218 22-51 (79)
242 PF12999 PRKCSH-like: Glucosid 34.9 2.2E+02 0.0049 26.0 8.0 19 196-214 157-175 (176)
243 PF10458 Val_tRNA-synt_C: Valy 34.8 2E+02 0.0042 21.6 7.9 23 191-213 3-25 (66)
244 PRK13729 conjugal transfer pil 34.7 2.1E+02 0.0045 30.2 8.6 19 219-237 103-121 (475)
245 TIGR03185 DNA_S_dndD DNA sulfu 34.5 3.5E+02 0.0075 29.1 10.7 11 29-39 49-59 (650)
246 smart00502 BBC B-Box C-termina 34.5 2.4E+02 0.0051 22.4 11.9 28 139-166 30-57 (127)
247 KOG1853 LIS1-interacting prote 34.4 4.6E+02 0.0099 25.8 12.7 64 144-219 16-79 (333)
248 COG4026 Uncharacterized protei 34.2 4.4E+02 0.0095 25.5 12.7 47 194-240 158-204 (290)
249 TIGR02209 ftsL_broad cell divi 34.1 1.1E+02 0.0024 23.5 5.2 35 186-220 25-59 (85)
250 PF09731 Mitofilin: Mitochondr 34.1 5.8E+02 0.013 26.8 15.8 27 199-225 378-404 (582)
251 PRK00295 hypothetical protein; 33.8 2.2E+02 0.0047 21.8 7.0 41 194-241 7-47 (68)
252 KOG0982 Centrosomal protein Nu 33.7 5.9E+02 0.013 26.8 12.9 28 188-215 293-320 (502)
253 PF04977 DivIC: Septum formati 33.7 1E+02 0.0022 23.1 4.9 25 187-211 26-50 (80)
254 COG4357 Zinc finger domain con 33.4 24 0.00053 29.4 1.4 44 285-328 36-93 (105)
255 KOG0976 Rho/Rac1-interacting s 33.3 7.9E+02 0.017 28.2 13.2 47 191-237 378-424 (1265)
256 TIGR00414 serS seryl-tRNA synt 33.3 5.3E+02 0.012 26.3 11.4 61 149-214 29-91 (418)
257 COG2960 Uncharacterized protei 33.3 3E+02 0.0064 23.2 8.0 14 198-211 72-85 (103)
258 TIGR02680 conserved hypothetic 33.0 7.4E+02 0.016 29.5 13.7 73 135-208 218-292 (1353)
259 PF05565 Sipho_Gp157: Siphovir 32.7 2.7E+02 0.0058 24.6 8.1 52 191-242 39-90 (162)
260 KOG1940 Zn-finger protein [Gen 32.6 8.2 0.00018 37.6 -1.7 42 286-329 160-209 (276)
261 PF14712 Snapin_Pallidin: Snap 32.6 2.4E+02 0.0053 22.0 10.8 53 157-211 37-90 (92)
262 PF10805 DUF2730: Protein of u 32.1 2.9E+02 0.0063 22.8 9.1 29 188-216 31-59 (106)
263 PRK13922 rod shape-determining 31.8 4.2E+02 0.0092 25.0 9.8 32 194-225 71-102 (276)
264 PF14916 CCDC92: Coiled-coil d 31.7 1.3E+02 0.0028 22.9 5.0 23 186-208 22-44 (60)
265 PF10764 Gin: Inhibitor of sig 31.4 27 0.00059 25.0 1.2 28 286-315 1-28 (46)
266 PF15272 BBP1_C: Spindle pole 31.3 4.4E+02 0.0095 24.6 14.5 101 132-237 47-149 (196)
267 KOG0288 WD40 repeat protein Ti 31.3 2.8E+02 0.006 28.9 8.7 27 192-218 41-67 (459)
268 PF05010 TACC: Transforming ac 31.1 4.4E+02 0.0096 24.6 14.0 93 137-240 94-188 (207)
269 PF05667 DUF812: Protein of un 31.1 6.8E+02 0.015 27.1 12.1 14 137-150 353-366 (594)
270 KOG4403 Cell surface glycoprot 31.1 2.5E+02 0.0055 29.5 8.4 11 170-180 242-252 (575)
271 PF09744 Jnk-SapK_ap_N: JNK_SA 31.1 3.9E+02 0.0084 23.9 12.8 29 136-165 39-67 (158)
272 PF04423 Rad50_zn_hook: Rad50 30.8 18 0.00039 26.1 0.2 10 317-326 22-31 (54)
273 PRK14714 DNA polymerase II lar 30.8 34 0.00074 39.8 2.4 46 284-330 667-724 (1337)
274 PF07975 C1_4: TFIIH C1-like d 30.7 33 0.00071 25.2 1.6 20 302-322 27-50 (51)
275 COG5484 Uncharacterized conser 30.7 3.1E+02 0.0067 26.8 8.5 23 89-111 86-108 (279)
276 PRK05431 seryl-tRNA synthetase 30.5 5.9E+02 0.013 26.1 11.2 12 148-159 26-37 (425)
277 KOG0709 CREB/ATF family transc 30.1 1.5E+02 0.0033 31.0 6.8 38 204-241 277-314 (472)
278 KOG4218 Nuclear hormone recept 29.9 24 0.00052 35.7 0.9 38 284-325 15-77 (475)
279 PRK13182 racA polar chromosome 29.7 4.1E+02 0.0089 24.1 8.8 25 186-210 119-143 (175)
280 TIGR01069 mutS2 MutS2 family p 29.6 8.2E+02 0.018 27.2 14.5 11 144-154 508-518 (771)
281 cd00730 rubredoxin Rubredoxin; 29.6 22 0.00047 25.9 0.5 12 317-328 36-47 (50)
282 PRK06975 bifunctional uroporph 29.4 7.7E+02 0.017 26.8 13.7 77 142-220 344-420 (656)
283 KOG2169 Zn-finger transcriptio 29.3 24 0.00053 38.1 1.0 41 281-326 303-356 (636)
284 TIGR01010 BexC_CtrB_KpsE polys 28.9 5.6E+02 0.012 25.1 12.4 16 10-25 26-41 (362)
285 cd00350 rubredoxin_like Rubred 28.7 23 0.00051 23.2 0.4 16 315-330 17-32 (33)
286 PF04111 APG6: Autophagy prote 28.6 5.8E+02 0.012 25.1 13.6 19 287-305 186-204 (314)
287 PRK02793 phi X174 lysis protei 28.5 2.8E+02 0.0061 21.4 7.7 43 199-241 8-50 (72)
288 KOG1937 Uncharacterized conser 28.4 7.4E+02 0.016 26.3 12.0 19 221-239 360-378 (521)
289 PRK14127 cell division protein 28.3 1.7E+02 0.0037 24.7 5.7 11 146-156 25-35 (109)
290 PRK14139 heat shock protein Gr 28.2 1.9E+02 0.0042 26.5 6.5 27 144-171 29-55 (185)
291 PF10211 Ax_dynein_light: Axon 28.2 4.6E+02 0.01 23.9 13.1 82 159-241 88-169 (189)
292 PF08317 Spc7: Spc7 kinetochor 28.0 5.8E+02 0.013 25.0 16.5 32 134-165 112-143 (325)
293 TIGR02169 SMC_prok_A chromosom 27.8 9E+02 0.02 27.1 15.9 46 190-235 873-918 (1164)
294 TIGR01069 mutS2 MutS2 family p 27.8 8.8E+02 0.019 27.0 14.5 9 157-165 513-521 (771)
295 KOG0298 DEAD box-containing he 27.7 4E+02 0.0086 31.7 9.9 44 282-326 1151-1199(1394)
296 PF07227 DUF1423: Protein of u 27.7 2.1E+02 0.0046 29.9 7.3 32 202-233 353-384 (446)
297 KOG0717 Molecular chaperone (D 27.6 7.7E+02 0.017 26.2 13.4 12 285-296 293-304 (508)
298 TIGR03185 DNA_S_dndD DNA sulfu 27.5 8E+02 0.017 26.4 14.4 21 192-212 449-469 (650)
299 PRK05892 nucleoside diphosphat 27.4 2.4E+02 0.0051 25.1 6.8 13 196-208 58-70 (158)
300 KOG2412 Nuclear-export-signal 27.4 5.1E+02 0.011 28.0 10.0 10 29-38 39-48 (591)
301 PF06005 DUF904: Protein of un 27.2 3E+02 0.0066 21.4 9.1 45 189-236 22-66 (72)
302 PRK02224 chromosome segregatio 27.0 8.8E+02 0.019 26.7 16.3 45 187-231 525-569 (880)
303 KOG0804 Cytoplasmic Zn-finger 26.9 7.7E+02 0.017 26.1 14.8 29 189-217 372-400 (493)
304 PF07106 TBPIP: Tat binding pr 26.8 3E+02 0.0064 24.2 7.3 10 156-165 80-89 (169)
305 KOG4279 Serine/threonine prote 26.7 3E+02 0.0066 31.1 8.5 71 143-213 956-1026(1226)
306 KOG4484 Uncharacterized conser 26.7 5.1E+02 0.011 23.9 10.7 70 140-209 27-103 (199)
307 PF14738 PaaSYMP: Solute carri 26.7 4.6E+02 0.01 23.4 9.1 54 147-200 94-147 (154)
308 TIGR01005 eps_transp_fam exopo 26.6 8.6E+02 0.019 26.5 13.9 43 198-240 358-403 (754)
309 PLN03188 kinesin-12 family pro 26.5 1.2E+03 0.025 28.0 14.5 25 189-213 1170-1194(1320)
310 PF12180 EABR: TSG101 and ALIX 26.5 2.2E+02 0.0047 19.5 5.6 34 206-239 2-35 (35)
311 KOG4055 Uncharacterized conser 26.5 4.2E+02 0.009 24.8 8.2 45 140-184 82-128 (213)
312 COG5222 Uncharacterized conser 26.4 31 0.00067 34.3 1.0 38 285-323 275-318 (427)
313 PF04340 DUF484: Protein of un 26.2 2.9E+02 0.0064 25.4 7.5 21 193-213 48-68 (225)
314 PF11932 DUF3450: Protein of u 26.1 5.5E+02 0.012 24.0 14.3 23 190-212 75-97 (251)
315 PF10571 UPF0547: Uncharacteri 25.9 36 0.00078 21.5 0.9 18 308-325 3-24 (26)
316 KOG0006 E3 ubiquitin-protein l 25.8 39 0.00085 33.9 1.6 30 283-313 220-251 (446)
317 PLN03188 kinesin-12 family pro 25.6 9E+02 0.02 28.8 12.3 37 184-220 1203-1239(1320)
318 PF09755 DUF2046: Uncharacteri 25.2 7E+02 0.015 24.9 17.6 33 207-239 85-118 (310)
319 KOG2068 MOT2 transcription fac 25.2 42 0.00091 33.5 1.7 45 283-328 248-300 (327)
320 PF09789 DUF2353: Uncharacteri 25.1 7E+02 0.015 25.0 12.4 53 188-240 126-181 (319)
321 PF15556 Zwint: ZW10 interacto 25.1 6E+02 0.013 24.2 15.3 67 138-206 60-132 (252)
322 PF05529 Bap31: B-cell recepto 25.1 4.8E+02 0.01 23.3 8.5 61 182-242 122-190 (192)
323 cd00179 SynN Syntaxin N-termin 25.0 4.1E+02 0.009 22.2 11.8 16 136-151 9-24 (151)
324 PRK14157 heat shock protein Gr 25.0 2.1E+02 0.0045 27.3 6.2 20 153-172 82-101 (227)
325 PRK03564 formate dehydrogenase 24.8 43 0.00094 33.2 1.7 41 283-324 186-235 (309)
326 TIGR03007 pepcterm_ChnLen poly 24.8 7.6E+02 0.016 25.2 11.0 37 206-242 254-290 (498)
327 PF13118 DUF3972: Protein of u 24.8 3.4E+02 0.0075 23.6 7.0 47 185-238 78-124 (126)
328 PRK04023 DNA polymerase II lar 24.8 53 0.0011 37.6 2.5 48 283-331 625-679 (1121)
329 KOG0980 Actin-binding protein 24.8 1.1E+03 0.024 27.1 13.7 33 186-218 495-527 (980)
330 PF14265 DUF4355: Domain of un 24.7 4E+02 0.0088 22.0 9.8 18 147-164 11-28 (125)
331 PRK14155 heat shock protein Gr 24.7 2.1E+02 0.0046 26.7 6.2 19 192-210 41-59 (208)
332 PF14645 Chibby: Chibby family 24.7 2.5E+02 0.0055 23.8 6.2 44 191-234 70-113 (116)
333 KOG2391 Vacuolar sorting prote 24.5 7.5E+02 0.016 25.2 10.2 8 38-45 85-92 (365)
334 KOG4343 bZIP transcription fac 24.5 1.9E+02 0.0041 31.1 6.3 52 160-218 291-342 (655)
335 PF06246 Isy1: Isy1-like splic 24.5 2.9E+02 0.0063 26.7 7.2 30 186-215 72-101 (255)
336 PF06364 DUF1068: Protein of u 24.4 5.6E+02 0.012 23.5 10.7 47 137-187 77-123 (176)
337 PRK04325 hypothetical protein; 24.3 3.4E+02 0.0074 21.1 7.4 41 194-241 11-51 (74)
338 PF13600 DUF4140: N-terminal d 24.1 1.6E+02 0.0035 23.6 4.8 29 190-218 75-103 (104)
339 PF08606 Prp19: Prp19/Pso4-lik 23.9 3.6E+02 0.0078 21.2 9.3 57 138-198 9-67 (70)
340 KOG1428 Inhibitor of type V ad 23.9 33 0.00072 40.9 0.8 45 283-328 3485-3546(3738)
341 PF07334 IFP_35_N: Interferon- 23.9 1.5E+02 0.0034 23.5 4.3 22 195-216 3-24 (76)
342 PF07716 bZIP_2: Basic region 23.8 2.8E+02 0.0061 19.8 6.7 35 182-216 14-49 (54)
343 KOG4807 F-actin binding protei 23.5 8.6E+02 0.019 25.4 14.3 74 145-218 368-447 (593)
344 PRK14143 heat shock protein Gr 23.5 2.8E+02 0.0062 26.4 6.9 23 147-170 67-89 (238)
345 PF14662 CCDC155: Coiled-coil 23.5 6.1E+02 0.013 23.7 12.1 64 173-236 73-139 (193)
346 PRK14158 heat shock protein Gr 23.1 3.1E+02 0.0068 25.4 6.9 21 192-212 68-88 (194)
347 PF06156 DUF972: Protein of un 23.1 4.5E+02 0.0097 22.0 8.1 51 183-240 6-56 (107)
348 COG1196 Smc Chromosome segrega 23.0 1.2E+03 0.027 27.0 16.1 30 193-222 794-823 (1163)
349 PF10073 DUF2312: Uncharacteri 23.0 2.6E+02 0.0056 22.2 5.4 34 184-217 3-36 (74)
350 PF13863 DUF4200: Domain of un 23.0 4.3E+02 0.0092 21.7 10.9 68 140-213 42-109 (126)
351 PF10886 DUF2685: Protein of u 22.9 42 0.0009 25.1 0.9 17 315-331 1-17 (54)
352 TIGR02449 conserved hypothetic 22.8 3.6E+02 0.0078 20.8 8.5 29 191-219 6-34 (65)
353 PRK14161 heat shock protein Gr 22.7 4.4E+02 0.0096 24.0 7.7 25 189-213 44-68 (178)
354 PF15035 Rootletin: Ciliary ro 22.6 5.8E+02 0.013 23.2 8.5 11 151-161 65-75 (182)
355 PF10481 CENP-F_N: Cenp-F N-te 22.6 3.7E+02 0.0081 26.5 7.5 60 182-241 15-74 (307)
356 cd08313 Death_TNFR1 Death doma 22.5 1.5E+02 0.0033 23.5 4.1 53 183-238 17-69 (80)
357 PF07889 DUF1664: Protein of u 22.5 5.1E+02 0.011 22.4 10.5 83 138-225 33-115 (126)
358 PF07926 TPR_MLP1_2: TPR/MLP1/ 22.4 4.8E+02 0.01 22.1 13.9 85 153-239 29-117 (132)
359 PF09403 FadA: Adhesion protei 22.4 5.1E+02 0.011 22.4 13.1 61 136-216 23-83 (126)
360 PF08549 SWI-SNF_Ssr4: Fungal 22.4 1.7E+02 0.0037 32.1 5.7 58 149-209 365-429 (669)
361 PF05266 DUF724: Protein of un 22.4 6.1E+02 0.013 23.3 12.2 26 187-212 119-144 (190)
362 PF13240 zinc_ribbon_2: zinc-r 22.3 31 0.00067 21.1 0.1 9 316-324 14-22 (23)
363 COG3883 Uncharacterized protei 22.3 7.4E+02 0.016 24.2 12.3 22 134-155 24-46 (265)
364 PF08549 SWI-SNF_Ssr4: Fungal 22.3 60 0.0013 35.4 2.3 24 185-208 371-394 (669)
365 PF08202 MIS13: Mis12-Mtw1 pro 22.2 1.2E+02 0.0025 29.7 4.2 27 198-224 163-189 (301)
366 cd07667 BAR_SNX30 The Bin/Amph 22.2 7E+02 0.015 23.9 12.7 80 136-221 117-207 (240)
367 PRK14159 heat shock protein Gr 22.2 2.6E+02 0.0056 25.5 6.1 13 154-166 29-41 (176)
368 PF04380 BMFP: Membrane fusoge 22.1 3.7E+02 0.008 21.1 6.3 20 193-212 58-77 (79)
369 PF15456 Uds1: Up-regulated Du 22.0 5.1E+02 0.011 22.2 10.5 44 186-229 75-118 (124)
370 TIGR02231 conserved hypothetic 22.0 9.1E+02 0.02 25.1 11.7 46 195-240 127-172 (525)
371 COG5219 Uncharacterized conser 21.8 43 0.00094 38.2 1.2 45 282-327 1467-1524(1525)
372 PF13166 AAA_13: AAA domain 21.8 1E+03 0.022 25.5 15.9 55 185-239 417-471 (712)
373 PRK14148 heat shock protein Gr 21.8 3.2E+02 0.007 25.3 6.7 20 148-168 41-60 (195)
374 PF14931 IFT20: Intraflagellar 21.8 5.1E+02 0.011 22.1 13.2 40 191-230 79-118 (120)
375 PRK14162 heat shock protein Gr 21.7 3.3E+02 0.0072 25.2 6.8 21 147-168 39-59 (194)
376 COG5481 Uncharacterized conser 21.7 3.8E+02 0.0082 20.6 6.5 48 160-212 9-58 (67)
377 PF12128 DUF3584: Protein of u 21.6 1.3E+03 0.029 26.9 16.3 29 190-218 676-704 (1201)
378 PF06657 Cep57_MT_bd: Centroso 21.6 4.1E+02 0.0088 20.9 7.7 59 182-240 14-74 (79)
379 PF10226 DUF2216: Uncharacteri 21.6 6.7E+02 0.015 23.4 10.6 32 193-224 109-140 (195)
380 PF09789 DUF2353: Uncharacteri 21.6 8.2E+02 0.018 24.5 9.9 24 138-162 14-37 (319)
381 PLN02678 seryl-tRNA synthetase 21.5 8E+02 0.017 25.6 10.2 11 149-159 32-42 (448)
382 KOG0837 Transcriptional activa 21.5 3.8E+02 0.0083 26.2 7.3 38 198-242 226-263 (279)
383 PRK09413 IS2 repressor TnpA; R 21.5 2.2E+02 0.0048 23.7 5.2 29 196-224 75-103 (121)
384 PRK14154 heat shock protein Gr 21.3 2.9E+02 0.0062 25.9 6.3 24 191-214 79-102 (208)
385 PF08654 DASH_Dad2: DASH compl 21.2 4.9E+02 0.011 21.7 7.5 16 184-199 3-18 (103)
386 KOG1150 Predicted molecular ch 21.2 7.2E+02 0.016 23.7 9.5 64 149-221 155-223 (250)
387 PRK02224 chromosome segregatio 21.1 1.1E+03 0.025 25.9 15.9 12 316-327 452-463 (880)
388 PF05660 DUF807: Coxiella burn 21.0 44 0.00096 29.1 0.8 23 30-53 6-28 (142)
389 PF05883 Baculo_RING: Baculovi 21.0 53 0.0011 28.9 1.3 33 283-315 25-65 (134)
390 COG1422 Predicted membrane pro 21.0 3.8E+02 0.0081 25.2 6.9 22 181-202 97-118 (201)
391 PRK01343 zinc-binding protein; 20.9 43 0.00094 25.2 0.7 10 316-325 10-19 (57)
392 KOG0971 Microtubule-associated 20.9 1.4E+03 0.029 26.7 13.7 20 19-38 57-81 (1243)
393 PHA02610 uvsY.-2 hypothetical 20.9 48 0.001 24.6 0.9 16 316-331 2-17 (53)
394 KOG4191 Histone acetyltransfer 20.8 4.8E+02 0.01 27.6 8.2 58 180-241 403-460 (516)
395 KOG1962 B-cell receptor-associ 20.8 7.3E+02 0.016 23.5 11.9 8 229-236 181-188 (216)
396 PRK00409 recombination and DNA 20.8 1.2E+03 0.026 26.0 12.6 10 157-166 518-527 (782)
397 TIGR02977 phageshock_pspA phag 20.7 6.7E+02 0.014 23.1 14.1 93 149-241 29-134 (219)
398 PF08826 DMPK_coil: DMPK coile 20.7 3.8E+02 0.0083 20.3 6.2 17 198-214 38-54 (61)
399 PRK10963 hypothetical protein; 20.7 3.5E+02 0.0076 25.1 6.8 20 194-213 46-65 (223)
400 PLN02436 cellulose synthase A 20.6 66 0.0014 37.0 2.3 44 283-326 35-89 (1094)
401 PF07889 DUF1664: Protein of u 20.6 5.6E+02 0.012 22.1 13.5 61 177-237 60-120 (126)
402 KOG3612 PHD Zn-finger protein 20.5 5.6E+02 0.012 27.6 8.8 32 153-184 458-492 (588)
403 PRK14151 heat shock protein Gr 20.4 3.3E+02 0.0073 24.7 6.4 17 192-208 48-64 (176)
404 PF10146 zf-C4H2: Zinc finger- 20.4 7.4E+02 0.016 23.5 13.1 45 198-242 59-103 (230)
405 PRK14153 heat shock protein Gr 20.3 3.7E+02 0.0081 24.9 6.8 32 138-171 25-56 (194)
406 PHA00727 hypothetical protein 20.3 7E+02 0.015 23.6 8.5 62 154-215 8-77 (278)
407 KOG4421 Uncharacterized conser 20.1 9E+02 0.019 25.2 9.9 102 100-214 87-188 (637)
408 TIGR02231 conserved hypothetic 20.1 9.4E+02 0.02 25.0 10.6 29 185-213 138-166 (525)
No 1
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-36 Score=274.83 Aligned_cols=186 Identities=41% Similarity=0.759 Sum_probs=161.7
Q ss_pred HHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 137 NVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 137 ~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q 216 (334)
++++++++|..|||+|++.++++||..+.+.+++|++.++.++|..+.++||+|++||+++++++++|+++++++.+|++
T Consensus 15 ~~~~~~~~q~~~id~f~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~ 94 (207)
T KOG1100|consen 15 DLASDIQRQSDEIDRFLKIQGEQLRRELEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQ 94 (207)
T ss_pred cceeecccccchhhHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHH
Confidence 68888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcC----c--ccCCCCCCCCcccchhh-hhcccCCCCCCCCCCCcccccccccccc
Q 019869 217 NWHYRAKYNESVVNLLKSNLQQAISQG----A--DQGKEGFGDSEVDDAAS-YINTNNYLTVPSGPGKSISRNHQMICRA 289 (334)
Q Consensus 217 ~Wq~~A~~nEa~a~~Lr~~LqQ~~~~~----~--~~~~eG~gdsE~dDa~S-~cd~~~~~~~~~~~~~~~~~~~~~~C~i 289 (334)
.|+++|++||++++.|+.+|+|+..+. . ..+...+|+.+.+|+.| +.++.. ..+.....|+.
T Consensus 95 ~w~~~a~~ne~~~~~l~~nl~q~~~~~~~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~-----------~~~~~~~~Cr~ 163 (207)
T KOG1100|consen 95 IWRDRAQTNEATVNSLRTNLDQVLAQCPASAPAEERGQKSCGDREADDGKSSYVDPSV-----------DNFKRMRSCRK 163 (207)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHhcccccCchhhhccccCccccccccccccchhh-----------hhhhcccccee
Confidence 999999999999999999999999874 1 11223355556666654 222211 11112223999
Q ss_pred ccccccceEEecCCCcccchhhHhhCCCCCCCcccccceEEEEe
Q 019869 290 CKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHL 333 (334)
Q Consensus 290 C~~~~~~vlllPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~ 333 (334)
|+.++++|+|+||+|+|+|..|...+..||+|+.++.++|+||+
T Consensus 164 C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 164 CGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVNF 207 (207)
T ss_pred cCcCCceEEeecccceEecccccccCccCCCCcChhhceeeccC
Confidence 99999999999999999999999989999999999999999986
No 2
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3e-12 Score=124.93 Aligned_cols=51 Identities=27% Similarity=0.774 Sum_probs=47.1
Q ss_pred cccccccccccccceEEecCCCcccchhhHhhC----CCCCCCcccccceEEEEe
Q 019869 283 HQMICRACKAKEASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNASVLVHL 333 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l----~~CPvCr~~i~~~v~v~~ 333 (334)
+...|+||++..+++++|||||+|+|..|++.+ ..||+||.+|...++|++
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 467899999999999999999999999999975 579999999999999875
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.04 E-value=7.4e-11 Score=84.81 Aligned_cols=45 Identities=31% Similarity=0.888 Sum_probs=39.5
Q ss_pred ccccccccccccceEEecCCCcccchhhHhhC----CCCCCCcccccce
Q 019869 284 QMICRACKAKEASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNAS 328 (334)
Q Consensus 284 ~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l----~~CPvCr~~i~~~ 328 (334)
...|.+|++...+++++||||+++|..|...+ .+||+||++|+.+
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 35799999999999999999999999999986 9999999999753
No 4
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.1e-11 Score=89.88 Aligned_cols=50 Identities=24% Similarity=0.687 Sum_probs=45.9
Q ss_pred cccccccccccceEEecCCCcccchhhHhhC-----CCCCCCcccccceEEEEeC
Q 019869 285 MICRACKAKEASVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKNASVLVHLS 334 (334)
Q Consensus 285 ~~C~iC~~~~~~vlllPC~HlclC~~C~~~l-----~~CPvCr~~i~~~v~v~~S 334 (334)
.+|.||++.+.+.||..|||+|+|.+|.-++ ..||+||++|.++|+.|-|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 5899999999999999999999999999865 6799999999999988765
No 5
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.3e-10 Score=107.51 Aligned_cols=52 Identities=19% Similarity=0.584 Sum_probs=49.3
Q ss_pred cccccccccccccceEEecCCCcccchhhHhhCCCCCCCcccccceEEEEeC
Q 019869 283 HQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 334 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~S 334 (334)
....|+||++.+.+.+||+|||++.|..|..+|..|||||..|...++||-+
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence 3789999999999999999999999999999999999999999999999853
No 6
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.2e-09 Score=107.09 Aligned_cols=53 Identities=26% Similarity=0.615 Sum_probs=49.4
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhhCCCCCCCcccccceEEEEeC
Q 019869 282 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 334 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~S 334 (334)
.....|+||.+.+.+++|+||||+|+|..|...+..||+||..|...+++|.|
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence 34568999999999999999999999999999999999999999999998865
No 7
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=5.3e-07 Score=95.52 Aligned_cols=52 Identities=21% Similarity=0.607 Sum_probs=44.1
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhh-----CCCCCCCccccc--ceEEEEe
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKN--ASVLVHL 333 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~-----l~~CPvCr~~i~--~~v~v~~ 333 (334)
.+....|.+|.++++++|+.-|+|+ ||..|... .++||.|.++|. .+..||+
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Confidence 4567899999999999999999999 99999874 699999999994 4555553
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.75 E-value=2.9e-05 Score=71.11 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=40.1
Q ss_pred cccccccccccccceEEecCCCcccchhhHhh--------------------CCCCCCCcccccc--eEEEE
Q 019869 283 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL--------------------VAVCPVCQFVKNA--SVLVH 332 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~--------------------l~~CPvCr~~i~~--~v~v~ 332 (334)
....|.||++...+.++.||+|+ +|..|... ...||+|+.++.. .+.||
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 45789999999999999999998 99999852 1489999999954 44444
No 9
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.70 E-value=2.1e-05 Score=55.14 Aligned_cols=36 Identities=31% Similarity=0.819 Sum_probs=30.9
Q ss_pred cccccccc---cceEEecCCCcccchhhHhhCC----CCCCCcc
Q 019869 287 CRACKAKE---ASVLLMPCRHLCLCKDCDVLVA----VCPVCQF 323 (334)
Q Consensus 287 C~iC~~~~---~~vlllPC~HlclC~~C~~~l~----~CPvCr~ 323 (334)
|.+|+... ...+|++|+|. +|..|...+. .||+|++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 77888766 46889999999 9999999876 9999984
No 10
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.66 E-value=1.4e-05 Score=79.92 Aligned_cols=50 Identities=28% Similarity=0.689 Sum_probs=43.1
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhh------CCCCCCCcccccceEEEE
Q 019869 282 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVL------VAVCPVCQFVKNASVLVH 332 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~------l~~CPvCr~~i~~~v~v~ 332 (334)
.....|+||-++.++|-+-||||+ +|..|-.. -..||.||..|.+.-.|.
T Consensus 367 sTFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 367 STFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred chHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence 345689999999999999999999 99999753 479999999998876554
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.64 E-value=2e-05 Score=53.75 Aligned_cols=34 Identities=35% Similarity=0.920 Sum_probs=28.1
Q ss_pred cccccccccce-EEecCCCcccchhhHhh----CCCCCCC
Q 019869 287 CRACKAKEASV-LLMPCRHLCLCKDCDVL----VAVCPVC 321 (334)
Q Consensus 287 C~iC~~~~~~v-lllPC~HlclC~~C~~~----l~~CPvC 321 (334)
|.||++...+. +++||||. +|.+|... ..+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 78999998887 79999999 99999875 4899988
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=3.6e-05 Score=72.01 Aligned_cols=49 Identities=24% Similarity=0.487 Sum_probs=40.9
Q ss_pred cccccccccccccceEEecCCCcccchhhHhh-------CCCCCCCcccccc--eEEEE
Q 019869 283 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL-------VAVCPVCQFVKNA--SVLVH 332 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~-------l~~CPvCr~~i~~--~v~v~ 332 (334)
..-.|-||++...+-|+-+|||| +|-.|.-+ ...||||+..|.. +|-||
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 46789999999999999999999 99999764 3788999998854 44444
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.60 E-value=5.2e-05 Score=71.67 Aligned_cols=47 Identities=26% Similarity=0.586 Sum_probs=37.6
Q ss_pred ccccccccccccc--------eEEecCCCcccchhhHhh----CCCCCCCcccccceEEE
Q 019869 284 QMICRACKAKEAS--------VLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASVLV 331 (334)
Q Consensus 284 ~~~C~iC~~~~~~--------vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~v 331 (334)
...|.||++.... .++.||+|. +|..|... ...||+||.++...+..
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 4689999986332 467789998 99999853 47999999999887765
No 14
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.40 E-value=0.00011 Score=47.58 Aligned_cols=34 Identities=29% Similarity=0.946 Sum_probs=29.9
Q ss_pred cccccccccceEEecCCCcccchhhHhh-----CCCCCCC
Q 019869 287 CRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVC 321 (334)
Q Consensus 287 C~iC~~~~~~vlllPC~HlclC~~C~~~-----l~~CPvC 321 (334)
|.+|++.....+++||+|. +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 99999873 3679987
No 15
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.39 E-value=6e-05 Score=52.48 Aligned_cols=36 Identities=31% Similarity=0.785 Sum_probs=29.5
Q ss_pred ccccccccc---cceEEecCCCcccchhhHhh----CCCCCCCc
Q 019869 286 ICRACKAKE---ASVLLMPCRHLCLCKDCDVL----VAVCPVCQ 322 (334)
Q Consensus 286 ~C~iC~~~~---~~vlllPC~HlclC~~C~~~----l~~CPvCr 322 (334)
.|.||++.. ..++.+||+|. +|..|... -.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 588998865 57888999998 99999875 48999997
No 16
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=9.1e-05 Score=71.32 Aligned_cols=48 Identities=25% Similarity=0.603 Sum_probs=39.9
Q ss_pred cccccccccccccceEEecCCCcccchhhHhh----CCCCCCCcccccceEEE
Q 019869 283 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASVLV 331 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~v 331 (334)
..+.|.+|++...+--..||||+ ||-.|-.. -..||+||....-+-.|
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCccee
Confidence 45899999999999888999999 99999653 47899999988654443
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.30 E-value=0.00021 Score=47.99 Aligned_cols=39 Identities=31% Similarity=0.831 Sum_probs=30.5
Q ss_pred ccccccccc-cceEEecCCCcccchhhHhh-----CCCCCCCcccc
Q 019869 286 ICRACKAKE-ASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVK 325 (334)
Q Consensus 286 ~C~iC~~~~-~~vlllPC~HlclC~~C~~~-----l~~CPvCr~~i 325 (334)
.|.+|++.. ..+.+.||+|. +|..|... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 488999987 44555569999 99999863 46799999763
No 18
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00011 Score=66.52 Aligned_cols=49 Identities=20% Similarity=0.472 Sum_probs=37.6
Q ss_pred ccccccccccccceE--EecCCCcccchhhHhh----CCCCCCCcccc--cceEEEEe
Q 019869 284 QMICRACKAKEASVL--LMPCRHLCLCKDCDVL----VAVCPVCQFVK--NASVLVHL 333 (334)
Q Consensus 284 ~~~C~iC~~~~~~vl--llPC~HlclC~~C~~~----l~~CPvCr~~i--~~~v~v~~ 333 (334)
...|.||++...--+ ---|||+ ||..|.+. ..+||+|++.| .....||+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 478999998655443 3689999 99999986 38999999766 44566664
No 19
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.10 E-value=0.00022 Score=72.01 Aligned_cols=48 Identities=23% Similarity=0.543 Sum_probs=40.8
Q ss_pred cccccccccccccccccceEEecCCCcccchhhHhh----CCCCCCCcccccc
Q 019869 279 ISRNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 279 ~~~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
..+.....|.||.+....-+++||+|. +|..|... ...||+|+..+..
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 446677899999999988889999999 99999874 3689999998754
No 20
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.10 E-value=0.00022 Score=52.91 Aligned_cols=44 Identities=25% Similarity=0.568 Sum_probs=37.9
Q ss_pred cccccccccccccceEEecCCCcccchhhHh--hCCCCCCCcccccc
Q 019869 283 HQMICRACKAKEASVLLMPCRHLCLCKDCDV--LVAVCPVCQFVKNA 327 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~HlclC~~C~~--~l~~CPvCr~~i~~ 327 (334)
....|..|......-+++||+|+ +|..|.. +...||+|..+|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 35679999999888999999999 8999976 56899999998853
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.08 E-value=0.00022 Score=48.60 Aligned_cols=34 Identities=35% Similarity=0.961 Sum_probs=29.4
Q ss_pred cccccccccceE-EecCCCcccchhhHhh------CCCCCCC
Q 019869 287 CRACKAKEASVL-LMPCRHLCLCKDCDVL------VAVCPVC 321 (334)
Q Consensus 287 C~iC~~~~~~vl-llPC~HlclC~~C~~~------l~~CPvC 321 (334)
|.||.+.....+ ++||+|. +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 789999888877 9999999 99999875 3679987
No 22
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.72 E-value=0.00084 Score=46.91 Aligned_cols=34 Identities=29% Similarity=0.813 Sum_probs=25.9
Q ss_pred cccccccccceEEecCCCcccchhhHhhC--------CCCCCC
Q 019869 287 CRACKAKEASVLLMPCRHLCLCKDCDVLV--------AVCPVC 321 (334)
Q Consensus 287 C~iC~~~~~~vlllPC~HlclC~~C~~~l--------~~CPvC 321 (334)
|.||++-..+=+.++|||. +|..|.... ..||+|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 7899999999999999999 999998752 369987
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00078 Score=69.29 Aligned_cols=43 Identities=23% Similarity=0.651 Sum_probs=38.5
Q ss_pred ccccccccccccceEEecCCCcccchhhHhh---------CCCCCCCcccccc
Q 019869 284 QMICRACKAKEASVLLMPCRHLCLCKDCDVL---------VAVCPVCQFVKNA 327 (334)
Q Consensus 284 ~~~C~iC~~~~~~vlllPC~HlclC~~C~~~---------l~~CPvCr~~i~~ 327 (334)
...|+||++.+...++.-|||. +|-.|--. ...||+|+..|.-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7899999999999999999999 99999653 3899999999866
No 24
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.00063 Score=61.37 Aligned_cols=41 Identities=29% Similarity=0.775 Sum_probs=35.9
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhhC----CCCCCCcc
Q 019869 282 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV----AVCPVCQF 323 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l----~~CPvCr~ 323 (334)
.....|.||++....-.++||+|. +|..|.... -.||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 456799999998888899999999 999999874 59999993
No 25
>PHA02926 zinc finger-like protein; Provisional
Probab=96.56 E-value=0.00077 Score=63.14 Aligned_cols=47 Identities=23% Similarity=0.517 Sum_probs=35.7
Q ss_pred ccccccccccccc---------cceEEecCCCcccchhhHhhC----------CCCCCCcccccceE
Q 019869 282 NHQMICRACKAKE---------ASVLLMPCRHLCLCKDCDVLV----------AVCPVCQFVKNASV 329 (334)
Q Consensus 282 ~~~~~C~iC~~~~---------~~vlllPC~HlclC~~C~~~l----------~~CPvCr~~i~~~v 329 (334)
+....|.||++.. .--+|.||+|. +|..|-..- ..||+||..+...+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 3457899999862 12578899999 999997631 34999999987544
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.44 E-value=0.0012 Score=46.72 Aligned_cols=27 Identities=37% Similarity=1.009 Sum_probs=16.9
Q ss_pred cccccccccc----eEEecCCCcccchhhHhhC
Q 019869 287 CRACKAKEAS----VLLMPCRHLCLCKDCDVLV 315 (334)
Q Consensus 287 C~iC~~~~~~----vlllPC~HlclC~~C~~~l 315 (334)
|.||++ ..+ -++|||||. +|..|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 788988 666 577899999 999998864
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0012 Score=63.02 Aligned_cols=42 Identities=26% Similarity=0.693 Sum_probs=36.5
Q ss_pred cccccccccccccceEEecCCCcccchhhHhh------CCCCCCCcccc
Q 019869 283 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL------VAVCPVCQFVK 325 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~------l~~CPvCr~~i 325 (334)
....|.+|.+..-+-+-.||||+ ||-.|--. ...||+||+..
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred cccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhc
Confidence 36789999999999999999999 99999654 36799999865
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.34 E-value=0.0027 Score=46.72 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=35.0
Q ss_pred cccccccccccceEEecCCCcccchhhHhh----CCCCCCCccccc
Q 019869 285 MICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKN 326 (334)
Q Consensus 285 ~~C~iC~~~~~~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~ 326 (334)
..|.+|++-..+-++.||||. +|..|... -.+||+|+.++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCC
Confidence 369999998888888999998 89999875 368999999874
No 29
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=96.30 E-value=0.0016 Score=63.12 Aligned_cols=46 Identities=24% Similarity=0.535 Sum_probs=40.2
Q ss_pred ccccccccccccccccceEEecCCCcccchhhHhh----CCCCCCCccccc
Q 019869 280 SRNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKN 326 (334)
Q Consensus 280 ~~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~ 326 (334)
.+.....|.||....+.-++.||||. ||.-|... ...||+||.+.-
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred cchhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHH
Confidence 45567799999999999999999999 99999985 489999998764
No 30
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.98 E-value=0.0049 Score=61.14 Aligned_cols=47 Identities=30% Similarity=0.742 Sum_probs=40.5
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhhC------CCCCCCcccccceE
Q 019869 282 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV------AVCPVCQFVKNASV 329 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l------~~CPvCr~~i~~~v 329 (334)
.+.+.|.||-..-.-+.++||+|. +|..|+-++ ..||+||..-..+|
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 467899999999999999999999 999999864 89999998755443
No 31
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=95.83 E-value=0.0023 Score=63.20 Aligned_cols=48 Identities=23% Similarity=0.547 Sum_probs=41.3
Q ss_pred ccccccccccccccccceEEecCCCcccchhhHhhC----CCCCCCcccccce
Q 019869 280 SRNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNAS 328 (334)
Q Consensus 280 ~~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l----~~CPvCr~~i~~~ 328 (334)
.+.....|-||++-...-+|.||+|. +|.-|.... ..||.|+.++..+
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccchh
Confidence 34567799999999999999999999 999998763 8999999987653
No 32
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.0067 Score=60.33 Aligned_cols=45 Identities=22% Similarity=0.547 Sum_probs=37.9
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhh----CCCCCCCcccccc
Q 019869 282 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
.+...|+||+..+.+.+|-||+|. .|..|..+ .+.|=.|.+.+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeee
Confidence 356799999999999999999999 79999875 3778888776653
No 33
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.015 Score=56.79 Aligned_cols=43 Identities=23% Similarity=0.563 Sum_probs=34.8
Q ss_pred ccccccccccccc---ceEEecCCCcccchhhHhh-----CCCCCCCccccc
Q 019869 283 HQMICRACKAKEA---SVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKN 326 (334)
Q Consensus 283 ~~~~C~iC~~~~~---~vlllPC~HlclC~~C~~~-----l~~CPvCr~~i~ 326 (334)
.+..|.||++... -++.+||.|. +=..|.++ -.+||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 4578999998532 3788999999 88899875 379999999874
No 34
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.018 Score=60.21 Aligned_cols=43 Identities=26% Similarity=0.588 Sum_probs=36.8
Q ss_pred cccccccccccccc-----eEEecCCCcccchhhHhh----CCCCCCCccccc
Q 019869 283 HQMICRACKAKEAS-----VLLMPCRHLCLCKDCDVL----VAVCPVCQFVKN 326 (334)
Q Consensus 283 ~~~~C~iC~~~~~~-----vlllPC~HlclC~~C~~~----l~~CPvCr~~i~ 326 (334)
....|.||.+.-.. ...+||+|. ++..|-.. ...||+||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhhh
Confidence 45689999998887 799999999 99999764 699999999543
No 35
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=93.73 E-value=0.046 Score=42.45 Aligned_cols=27 Identities=26% Similarity=0.775 Sum_probs=20.8
Q ss_pred cceEEecCCCcccchhhHhh----CCCCCCCc
Q 019869 295 ASVLLMPCRHLCLCKDCDVL----VAVCPVCQ 322 (334)
Q Consensus 295 ~~vlllPC~HlclC~~C~~~----l~~CPvCr 322 (334)
..+++.+|+|. +-..|... ...||+||
T Consensus 43 ~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 43 CPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp S-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 45677899999 99999874 47999997
No 36
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=93.73 E-value=0.019 Score=44.13 Aligned_cols=44 Identities=25% Similarity=0.556 Sum_probs=23.4
Q ss_pred cccccccccccccccce-EEecCCCcccchhhHhhC--CCCCCCcccc
Q 019869 281 RNHQMICRACKAKEASV-LLMPCRHLCLCKDCDVLV--AVCPVCQFVK 325 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~v-lllPC~HlclC~~C~~~l--~~CPvCr~~i 325 (334)
+.....|.+|.+--..- .+--|-|. +|..|...- ..||+|+.|-
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred HHHhcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 34567899999876654 57899999 999999763 7899999875
No 37
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.042 Score=55.13 Aligned_cols=43 Identities=26% Similarity=0.601 Sum_probs=31.6
Q ss_pred ccccccccccccc-------------cceEEecCCCcccchhhHh----hCCCCCCCcccc
Q 019869 282 NHQMICRACKAKE-------------ASVLLMPCRHLCLCKDCDV----LVAVCPVCQFVK 325 (334)
Q Consensus 282 ~~~~~C~iC~~~~-------------~~vlllPC~HlclC~~C~~----~l~~CPvCr~~i 325 (334)
.++..|.||++.- +.--=+||||. +=-.|-+ +..+||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 4568999999961 11134799997 6777765 468999999994
No 38
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.085 Score=51.00 Aligned_cols=44 Identities=20% Similarity=0.522 Sum_probs=36.6
Q ss_pred ccccccccccccccc-eEEecCCCcccchhhHhhC------CCCCCCccccc
Q 019869 282 NHQMICRACKAKEAS-VLLMPCRHLCLCKDCDVLV------AVCPVCQFVKN 326 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~-vlllPC~HlclC~~C~~~l------~~CPvCr~~i~ 326 (334)
+...+|++|.+.+.. .++.||+|. .|-.|.... -.||.|..+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 467899999998875 677889998 899998752 48999998765
No 39
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.74 E-value=0.1 Score=49.65 Aligned_cols=45 Identities=22% Similarity=0.435 Sum_probs=37.1
Q ss_pred cccccccccccc----ccceEEecCCCcccchhhHhhCC---CCCCCcccccc
Q 019869 282 NHQMICRACKAK----EASVLLMPCRHLCLCKDCDVLVA---VCPVCQFVKNA 327 (334)
Q Consensus 282 ~~~~~C~iC~~~----~~~vlllPC~HlclC~~C~~~l~---~CPvCr~~i~~ 327 (334)
.....|+|.+.. ..-|+|.||||+ ++..+...+. .||+|..++..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCcccc
Confidence 456789998764 457889999998 8999998876 89999999854
No 40
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=0.046 Score=53.25 Aligned_cols=46 Identities=24% Similarity=0.516 Sum_probs=39.8
Q ss_pred cccccccccccceEEecCCCcccchhhHhh----CCCCCCCcccccceEEE
Q 019869 285 MICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASVLV 331 (334)
Q Consensus 285 ~~C~iC~~~~~~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~v 331 (334)
-.|-||+.-..+=|.--|+|. +|..|+.. -..|++|...+.++..+
T Consensus 242 f~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFNV 291 (313)
T ss_pred ccccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccch
Confidence 469999999999888999999 99999975 37899999999876543
No 41
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=92.02 E-value=0.13 Score=50.66 Aligned_cols=51 Identities=6% Similarity=-0.092 Sum_probs=43.6
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhh--CCCCCCCcccccceEEE
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL--VAVCPVCQFVKNASVLV 331 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~--l~~CPvCr~~i~~~v~v 331 (334)
+-....|.+|...-.+.++.||+|.-+|.+|+.. -..||+|.......|.|
T Consensus 340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred chhhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 3456799999999999999999999999999975 38999998877666655
No 42
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.56 E-value=0.12 Score=51.49 Aligned_cols=43 Identities=23% Similarity=0.579 Sum_probs=32.2
Q ss_pred cccccccccc---cceEEecCCCcccchhhHhh----C-CCCCCCcccccce
Q 019869 285 MICRACKAKE---ASVLLMPCRHLCLCKDCDVL----V-AVCPVCQFVKNAS 328 (334)
Q Consensus 285 ~~C~iC~~~~---~~vlllPC~HlclC~~C~~~----l-~~CPvCr~~i~~~ 328 (334)
-.|.||.+.- -.+.+|||.|- +=..|.+. - ..||+|+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCC
Confidence 5899999853 34677999998 66678653 2 4599999987543
No 43
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=91.56 E-value=0.052 Score=50.38 Aligned_cols=46 Identities=26% Similarity=0.595 Sum_probs=39.4
Q ss_pred cccccccccccceEEecCCCcccchhhHhh----CCCCCCCcccccceEEE
Q 019869 285 MICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASVLV 331 (334)
Q Consensus 285 ~~C~iC~~~~~~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~v 331 (334)
..|.||...-.+-|+..|||. +|..|+.. -..|-+|.+...+...|
T Consensus 197 F~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred eeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 489999999999899999999 99999975 38999999887765543
No 44
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.12 E-value=0.15 Score=48.77 Aligned_cols=44 Identities=23% Similarity=0.421 Sum_probs=37.0
Q ss_pred ccccccccccc----ccceEEecCCCcccchhhHhhC----CCCCCCcccccc
Q 019869 283 HQMICRACKAK----EASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNA 327 (334)
Q Consensus 283 ~~~~C~iC~~~----~~~vlllPC~HlclC~~C~~~l----~~CPvCr~~i~~ 327 (334)
....|.+|++. ..+++|-||||+ +|.+|..++ ..||||..+...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcc
Confidence 45689999984 457899999999 899999975 799999988754
No 45
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=0.14 Score=52.02 Aligned_cols=45 Identities=22% Similarity=0.562 Sum_probs=37.5
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhh----CCCCCCCcccccc
Q 019869 282 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
...-.|.||....-.-+..||||. +|..|..+ -..||.||.++..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 567899999998777777799999 99999543 4899999998764
No 46
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=0.15 Score=51.87 Aligned_cols=42 Identities=24% Similarity=0.566 Sum_probs=32.7
Q ss_pred ccccccccccccc---ceEEecCCCcccchhhHhh------------CCCCCCCcccc
Q 019869 283 HQMICRACKAKEA---SVLLMPCRHLCLCKDCDVL------------VAVCPVCQFVK 325 (334)
Q Consensus 283 ~~~~C~iC~~~~~---~vlllPC~HlclC~~C~~~------------l~~CPvCr~~i 325 (334)
....|.||++... +++++||+|+ +|+.|... .-+||-|...-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~ 239 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKCGS 239 (445)
T ss_pred hcccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCCcc
Confidence 4568999999765 5899999999 99999874 15777765543
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=89.31 E-value=0.11 Score=56.56 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=36.7
Q ss_pred ccccccccccccceEE---ecCCCcccchhhHhh----CCCCCCCcccccceEEE
Q 019869 284 QMICRACKAKEASVLL---MPCRHLCLCKDCDVL----VAVCPVCQFVKNASVLV 331 (334)
Q Consensus 284 ~~~C~iC~~~~~~vll---lPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~v 331 (334)
...|.+|.....+-++ .+|.|. ||..|... ..+||+||..+..++..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeeee
Confidence 4578888876655444 699999 99999875 48999999988776653
No 48
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.20 E-value=15 Score=40.12 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=37.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQ 238 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ 238 (334)
|.++.|.|+.++++.....||++..++.|.+..+..-++++.-+..|...|.-
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~a 598 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSA 598 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 56777888889999999999999999998877666534444444445544443
No 49
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.89 E-value=20 Score=37.28 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=64.4
Q ss_pred HHHHHHHHhHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 148 EFDQYIKVQEEYLAKGVQ----DMKQ-RHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRA 222 (334)
Q Consensus 148 EiD~~ir~q~erlR~~le----e~rq-rh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A 222 (334)
.+-.+.+.|.+.+|..++ |.+. .|-...+.++...+-+||.+-..-+.+..++..+++|-.+.|...-+.|+..+
T Consensus 340 ~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl 419 (493)
T KOG0804|consen 340 IMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKL 419 (493)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444445556666666555 5555 67778888999999999999999999999999999999999999999999988
Q ss_pred hhhHH
Q 019869 223 KYNES 227 (334)
Q Consensus 223 ~~nEa 227 (334)
+..+.
T Consensus 420 ~~~~e 424 (493)
T KOG0804|consen 420 KELEE 424 (493)
T ss_pred HHHHH
Confidence 76554
No 50
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.05 E-value=0.25 Score=49.30 Aligned_cols=47 Identities=19% Similarity=0.481 Sum_probs=37.1
Q ss_pred ccccccccccccccceE-----E---ecCCCcccchhhHhh-----------CCCCCCCcccccceE
Q 019869 282 NHQMICRACKAKEASVL-----L---MPCRHLCLCKDCDVL-----------VAVCPVCQFVKNASV 329 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~vl-----l---lPC~HlclC~~C~~~-----------l~~CPvCr~~i~~~v 329 (334)
.....|-||++.-.... | .+|.|. +|..|... .+.||.||.....++
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 34679999999766665 4 679998 99999753 389999999876554
No 51
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.62 E-value=0.36 Score=47.31 Aligned_cols=44 Identities=23% Similarity=0.639 Sum_probs=34.5
Q ss_pred ccccccccccccccceEEecC--CCcccchhhH-hhCCCCCCCcccccc
Q 019869 282 NHQMICRACKAKEASVLLMPC--RHLCLCKDCD-VLVAVCPVCQFVKNA 327 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~vlllPC--~HlclC~~C~-~~l~~CPvCr~~i~~ 327 (334)
.+...|++|+..-.-=++ -| ||+ +|..|. .....||.||-+|..
T Consensus 46 ~~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCcccce-ecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 456799999987554433 45 799 899999 556999999999873
No 52
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=86.17 E-value=22 Score=36.68 Aligned_cols=71 Identities=27% Similarity=0.317 Sum_probs=45.9
Q ss_pred HHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 141 ELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHM-----ASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEA 215 (334)
Q Consensus 141 ~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~-----r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~ 215 (334)
++|++..|.|+=+ ++++..|++.=+++. +.++.+.-+++-.+|.+||.||.++.+.|..|.|+.-+..++.
T Consensus 3 ~~~s~~s~~dqr~----~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~ 78 (459)
T KOG0288|consen 3 PLYSQKSENDQRL----IDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATE 78 (459)
T ss_pred hhhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777533 333444443333222 3445555666677899999999999999998887776655544
No 53
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=85.53 E-value=0.77 Score=35.36 Aligned_cols=44 Identities=9% Similarity=0.134 Sum_probs=32.8
Q ss_pred cccccccccccccceEEecCCCcccchhhHhh-----CCCCCCCcccccc
Q 019869 283 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNA 327 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 327 (334)
....|.+|++-..+=|++||||. +++.|-.. -..||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 45689999999999999999987 89999764 3789999988764
No 54
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.60 E-value=0.34 Score=50.41 Aligned_cols=46 Identities=24% Similarity=0.665 Sum_probs=34.3
Q ss_pred ccccccccccccc-----------------ccceEEecCCCcccchhhHhh-C----CCCCCCcccccc
Q 019869 281 RNHQMICRACKAK-----------------EASVLLMPCRHLCLCKDCDVL-V----AVCPVCQFVKNA 327 (334)
Q Consensus 281 ~~~~~~C~iC~~~-----------------~~~vlllPC~HlclC~~C~~~-l----~~CPvCr~~i~~ 327 (334)
++....|+||+.. .++.++.||.|+ +=..|-.. | -.||+||.++..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4566789999972 224667799998 78888764 3 289999998753
No 55
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=84.58 E-value=0.39 Score=47.36 Aligned_cols=42 Identities=26% Similarity=0.730 Sum_probs=31.4
Q ss_pred ccccccccccccc-eEEecCCCcccchhhHhh--CCCCCCCccccc
Q 019869 284 QMICRACKAKEAS-VLLMPCRHLCLCKDCDVL--VAVCPVCQFVKN 326 (334)
Q Consensus 284 ~~~C~iC~~~~~~-vlllPC~HlclC~~C~~~--l~~CPvCr~~i~ 326 (334)
...|.-|-.--+. --++||.|. ||-+|+.. .+.||.|-..|.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcceeeecccccchh-hhhhhhhcCccccCcCcccHHH
Confidence 4578888654332 246899999 99999976 469999987653
No 56
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=84.43 E-value=20 Score=36.35 Aligned_cols=40 Identities=23% Similarity=0.452 Sum_probs=29.1
Q ss_pred hhhHHHHHHhHhhHHHHHHHHHhH----------HHHHHHHHHHHHHHHH
Q 019869 134 LADNVRTELDRQKEEFDQYIKVQE----------EYLAKGVQDMKQRHMA 173 (334)
Q Consensus 134 l~~~l~~~l~rq~~EiD~~ir~q~----------erlR~~lee~rqrh~r 173 (334)
-|||+.++|++.+..+-+-|..+. ++|-+.|++.|+||-.
T Consensus 136 eGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeq 185 (561)
T KOG1103|consen 136 EGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQ 185 (561)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888877776666665554 4567788899999963
No 57
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=84.29 E-value=0.38 Score=52.03 Aligned_cols=40 Identities=30% Similarity=0.686 Sum_probs=34.9
Q ss_pred cccccccccccceEEecCCCcccchhhHhhC------CCCCCCccccc
Q 019869 285 MICRACKAKEASVLLMPCRHLCLCKDCDVLV------AVCPVCQFVKN 326 (334)
Q Consensus 285 ~~C~iC~~~~~~vlllPC~HlclC~~C~~~l------~~CPvCr~~i~ 326 (334)
..|.+|.+ ..+.++.+|+|. +|.+|-... ..||+|+..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 79999999 888999999999 999998752 57999998764
No 58
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=84.25 E-value=0.28 Score=46.89 Aligned_cols=40 Identities=33% Similarity=0.845 Sum_probs=30.7
Q ss_pred ccccccccccc-----ccceEEec-CCCcccchhhHhhC-----CCCC--CCcc
Q 019869 283 HQMICRACKAK-----EASVLLMP-CRHLCLCKDCDVLV-----AVCP--VCQF 323 (334)
Q Consensus 283 ~~~~C~iC~~~-----~~~vlllP-C~HlclC~~C~~~l-----~~CP--vCr~ 323 (334)
....|++|..- ..-+++-| |.|. +|..|..++ ..|| .|..
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 45689999863 34456678 9999 999999874 7899 7754
No 59
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.17 E-value=35 Score=31.49 Aligned_cols=93 Identities=15% Similarity=0.251 Sum_probs=54.1
Q ss_pred HHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--------HH
Q 019869 140 TELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIK--------QM 211 (334)
Q Consensus 140 ~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~--------ql 211 (334)
..++....|+.++|.-|.+-+|.-=+..|+- ..-+..+-++|+++++||.++...+..|+.-+. .|
T Consensus 50 ~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~------q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL 123 (194)
T PF15619_consen 50 QKYEDTEAELPQLLQRHNEEVRVLRERLRKS------QEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREEL 123 (194)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH
Confidence 3345556677777877777777444443332 234555668899999999988777665544222 22
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 019869 212 AAEAQNWHYRAKYNESVVNLLKSNLQQ 238 (334)
Q Consensus 212 ~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ 238 (334)
..+-..-......++..+..|..+|+-
T Consensus 124 ~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 124 QRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333344455555566666666553
No 60
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=83.96 E-value=0.33 Score=49.23 Aligned_cols=50 Identities=24% Similarity=0.525 Sum_probs=0.0
Q ss_pred ccccccccc-------------------cccceEEecCCCcccch----hhHhh--------CCCCCCCcccccc---eE
Q 019869 284 QMICRACKA-------------------KEASVLLMPCRHLCLCK----DCDVL--------VAVCPVCQFVKNA---SV 329 (334)
Q Consensus 284 ~~~C~iC~~-------------------~~~~vlllPC~HlclC~----~C~~~--------l~~CPvCr~~i~~---~v 329 (334)
.+.|.+|+. .+...+|-||||+|.=+ .+... -..||.|-.++.+ .|
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~v 407 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYV 407 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCce
Confidence 667888875 45678899999995211 11111 2699999999865 56
Q ss_pred EEEe
Q 019869 330 LVHL 333 (334)
Q Consensus 330 ~v~~ 333 (334)
+++|
T Consensus 408 rLiF 411 (416)
T PF04710_consen 408 RLIF 411 (416)
T ss_dssp ----
T ss_pred EEEE
Confidence 6554
No 61
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=83.12 E-value=45 Score=37.45 Aligned_cols=49 Identities=12% Similarity=0.287 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 191 DMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 191 e~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
+.-|..+.+++.+|.+.+.++..+...|-.+.++...+...|+.+|.-+
T Consensus 458 ~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l 506 (980)
T KOG0980|consen 458 EQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALL 506 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3455677889999999999999999999999998888888887766544
No 62
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.11 E-value=44 Score=31.90 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=54.8
Q ss_pred chhhhhhhHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 019869 129 PIILSLADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERI 208 (334)
Q Consensus 129 ~~~~~l~~~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl 208 (334)
+...+++|-..+.+..+..-||.|++.--.++-..+.+--++-++ ....+..+.+-|++.+.|+.+.++...+-+++.
T Consensus 11 et~l~l~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~--~~~e~e~l~~~l~etene~~~~neL~~ek~~~q 88 (246)
T KOG4657|consen 11 ETMLSLGDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQ--SQVELENLKADLRETENELVKVNELKTEKEARQ 88 (246)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888899999999999999987633333223222221111 111222334447777888877777766666666
Q ss_pred HHHHHHHHHHHH
Q 019869 209 KQMAAEAQNWHY 220 (334)
Q Consensus 209 ~ql~~E~q~Wq~ 220 (334)
-.++.|..+.|.
T Consensus 89 ~~ieqeik~~q~ 100 (246)
T KOG4657|consen 89 MGIEQEIKATQS 100 (246)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 63
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=82.39 E-value=2 Score=32.44 Aligned_cols=32 Identities=28% Similarity=0.275 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019869 192 MEIENMNRKNRELIERIKQMAAEAQNWHYRAK 223 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~ 223 (334)
+|++-++.+.+||++++.+|+.|+...+..+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 48899999999999999999999987666553
No 64
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=82.15 E-value=14 Score=28.84 Aligned_cols=57 Identities=25% Similarity=0.326 Sum_probs=31.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 183 LAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 183 ~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
+.++|++||+.|+.+....-.|....-+...-....+.....+|..+..|+..++.+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777766655555544444444444444444455555555555555443
No 65
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=82.11 E-value=7.5 Score=39.80 Aligned_cols=150 Identities=17% Similarity=0.266 Sum_probs=78.4
Q ss_pred HHHHhHhhHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 139 RTELDRQKEEFDQYIKVQEEYLAKGVQ-DMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 139 ~~~l~rq~~EiD~~ir~q~erlR~~le-e~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~ 217 (334)
.+.|+|.+.|+|+-.+--..-|+.+-. -.|-.++.+|..++......|+.-|- .+ .+--|+.+|+-.+..+..
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~---~~--Crale~n~r~levA~~IG- 325 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKI---CN--CRALEFNTRLLEVASSIG- 325 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcc---cc--cchhHHHHHHHHHHHHhh-
Confidence 455888888888877665555554333 34556777777766665555554431 11 223334444332322221
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcCcccCCCCCCCCc-ccchh-hhhcccCCCCCCCCCCCccccccccccccccc---
Q 019869 218 WHYRAKYNESVVNLLKSNLQQAISQGADQGKEGFGDSE-VDDAA-SYINTNNYLTVPSGPGKSISRNHQMICRACKA--- 292 (334)
Q Consensus 218 Wq~~A~~nEa~a~~Lr~~LqQ~~~~~~~~~~eG~gdsE-~dDa~-S~cd~~~~~~~~~~~~~~~~~~~~~~C~iC~~--- 292 (334)
+.-.+-.++--|..++... |.-|.. ++-+. +-|+. .....|-.|++
T Consensus 326 -------~K~~vlK~hcrla~iYrs~------gl~d~~~~h~~ra~~~~~----------------e~~L~Cg~CGe~~G 376 (518)
T KOG1941|consen 326 -------AKLSVLKLHCRLASIYRSK------GLQDELRAHVVRAHECVE----------------ETELYCGLCGESIG 376 (518)
T ss_pred -------hhHHHHHHHHHHHHHHHhc------cchhHHHHHHHHHHHHHH----------------HHhhhhhhhhhhhc
Confidence 1122333444555555321 110100 00000 11221 12456777776
Q ss_pred -cccceEEecCCCcccchhhHhh------CCCCCCCccc
Q 019869 293 -KEASVLLMPCRHLCLCKDCDVL------VAVCPVCQFV 324 (334)
Q Consensus 293 -~~~~vlllPC~HlclC~~C~~~------l~~CPvCr~~ 324 (334)
++.+.=-+||-|. +=.-|... -+.||-||+-
T Consensus 377 lk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 377 LKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred CCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHH
Confidence 4556667899998 78888773 3899999943
No 66
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.68 E-value=50 Score=31.58 Aligned_cols=97 Identities=18% Similarity=0.316 Sum_probs=65.7
Q ss_pred HHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----H
Q 019869 140 TELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEK--GLAKKLQEKDMEIENMNRKNRELIERIKQMA----A 213 (334)
Q Consensus 140 ~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~--~~~~rLReKe~Eie~~~krnaELeErl~ql~----~ 213 (334)
..+.+-+.|++..++.+.+.++..... ....+-.+-+. ..-..+.....+|+.+..++..|+.++..+. .
T Consensus 180 ~~~~~~~~e~e~~y~~k~~~l~~~~~~----~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 180 EIAQKNREELEEWYQSKLEELRQQSEK----SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhcccccccccccccc----cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 334466678888888888887755443 22222222121 2334577888899999999999999998665 4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019869 214 EAQNWHYRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 214 E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
+.+.|+......+.....|+..+++..
T Consensus 256 ~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 256 EREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 556678887788887778877775543
No 67
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=81.54 E-value=52 Score=32.59 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=34.9
Q ss_pred hHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 136 DNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKG 182 (334)
Q Consensus 136 ~~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~ 182 (334)
...+++|.+.+.|+.-+||.+..+|- +..+++-+.||.+|+..
T Consensus 23 ~sav~qL~~~r~~teelIr~rVrq~V----~hVqaqEreLLe~v~~r 65 (324)
T PF12126_consen 23 RSAVSQLGRARADTEELIRARVRQVV----AHVQAQERELLEAVEAR 65 (324)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 35678999999999999999988876 44566778899988853
No 68
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=80.58 E-value=15 Score=31.81 Aligned_cols=70 Identities=27% Similarity=0.389 Sum_probs=36.9
Q ss_pred CchhhhhhhHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHH
Q 019869 128 PPIILSLADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGL----AKKLQEKDMEIENMNRKNRE 203 (334)
Q Consensus 128 ~~~~~~l~~~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~----~~rLReKe~Eie~~~krnaE 203 (334)
|.+++.|=|++-. .++...++|+. .+++.++..+.+.|. -|.+.+..+ ..+--..+..|..+.++.+|
T Consensus 66 P~tvLALLDElE~-~~~~i~~~~~~--~e~~~~a~~~~~l~~-----~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaE 137 (139)
T PF13935_consen 66 PATVLALLDELER-AQQRIAELEQE--CENEDIALDVQKLRV-----ELEAAEKRIAAELAEQAEAYEGEIADYAKRIAE 137 (139)
T ss_pred chHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 4445555454433 34555667666 555566555555544 233333333 23333455666777777777
Q ss_pred HH
Q 019869 204 LI 205 (334)
Q Consensus 204 Le 205 (334)
||
T Consensus 138 le 139 (139)
T PF13935_consen 138 LE 139 (139)
T ss_pred cC
Confidence 64
No 69
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=80.29 E-value=27 Score=33.40 Aligned_cols=36 Identities=19% Similarity=0.570 Sum_probs=21.0
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhhCCCCCCCccc
Q 019869 282 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFV 324 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l~~CPvCr~~ 324 (334)
-.+..|..|+- .+|=.|+..=.. ...+-.||.|..-
T Consensus 195 l~g~~C~GC~m------~l~~~~~~~V~~-~d~iv~CP~CgRI 230 (239)
T COG1579 195 LEGRVCGGCHM------KLPSQTLSKVRK-KDEIVFCPYCGRI 230 (239)
T ss_pred ecCCcccCCee------eecHHHHHHHhc-CCCCccCCccchH
Confidence 35677888863 345555522222 3446789988753
No 70
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.45 E-value=0.2 Score=50.07 Aligned_cols=47 Identities=26% Similarity=0.509 Sum_probs=36.9
Q ss_pred ccccccccccccccc-ceEEecCCCcccchhhHhhC-----CCCCCCcccccce
Q 019869 281 RNHQMICRACKAKEA-SVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKNAS 328 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~-~vlllPC~HlclC~~C~~~l-----~~CPvCr~~i~~~ 328 (334)
+.....|.||++--. .+...-|.|. ||..|.+.. ..||.||+...+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 445679999998544 4566789999 999999863 8999999876543
No 71
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=78.89 E-value=0.89 Score=39.79 Aligned_cols=45 Identities=33% Similarity=0.764 Sum_probs=32.7
Q ss_pred ccccccccccccce-EEec---CCCcccchhhHhhC-------CCCCCCcccccceE
Q 019869 284 QMICRACKAKEASV-LLMP---CRHLCLCKDCDVLV-------AVCPVCQFVKNASV 329 (334)
Q Consensus 284 ~~~C~iC~~~~~~v-lllP---C~HlclC~~C~~~l-------~~CPvCr~~i~~~v 329 (334)
.-.|-||.+...+- .|.| || +.+|..|...+ .+||+|+..+.++-
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 45677888766653 3444 66 56999998764 89999999987653
No 72
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=78.75 E-value=41 Score=33.88 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 019869 204 LIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAIS 241 (334)
Q Consensus 204 LeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~ 241 (334)
++|+..++.+--++.+..+.+.|..+..|..+|.++++
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~la 176 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEEESQTLNRELAEALA 176 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444455555555554443
No 73
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.56 E-value=42 Score=28.76 Aligned_cols=94 Identities=14% Similarity=0.244 Sum_probs=51.4
Q ss_pred hhhhHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019869 133 SLADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 133 ~l~~~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~ 212 (334)
.+-..+.++|.+-..|+.. ++.+..++ +..|..-...|+...+. .+++....++..+|+..++.+.
T Consensus 16 ~~ve~L~s~lr~~E~E~~~-l~~el~~l----~~~r~~l~~Eiv~l~~~---------~e~~~~~~~~~~~L~~el~~l~ 81 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELAS-LQEELARL----EAERDELREEIVKLMEE---------NEELRALKKEVEELEQELEELQ 81 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888864 36666655 34444444555554442 3333344444444444444444
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019869 213 AEAQNWHYRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 213 ~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
...++--..--+....+.-|+..++.+.
T Consensus 82 ~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 82 QRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4444433444444455566777666554
No 74
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.92 E-value=61 Score=30.18 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=19.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 185 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 185 ~rLReKe~Eie~~~krnaELeErl~ql~~E~q 216 (334)
.++.+.+.++..+.++|.+|.+.+..+..|..
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666655544
No 75
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=76.61 E-value=36 Score=31.88 Aligned_cols=77 Identities=19% Similarity=0.363 Sum_probs=56.3
Q ss_pred HHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hhHHHHHHHHHHHHHHHHHHHHH
Q 019869 150 DQYIKVQEEYLA---KGVQDMKQRHMASFLSAIEKGLAKKLQ---------------EKDMEIENMNRKNRELIERIKQM 211 (334)
Q Consensus 150 D~~ir~q~erlR---~~lee~rqrh~r~ll~ave~~~~~rLR---------------eKe~Eie~~~krnaELeErl~ql 211 (334)
.++|.+++|-.+ ++|+|---||+. +.++..+++.|.+ .-+++|-.+++|+.|||-||+.|
T Consensus 71 ErILaLEad~~kWEqkYLEEs~mrq~a--~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~L 148 (205)
T PF12240_consen 71 ERILALEADMTKWEQKYLEESAMRQFA--MDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKAL 148 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHH
Confidence 478888888776 567777777774 3445555566655 33789999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Q 019869 212 AAEAQNWHYRAKYNESVVNLLKSN 235 (334)
Q Consensus 212 ~~E~q~Wq~~A~~nEa~a~~Lr~~ 235 (334)
.++ ..+.++|+..|+..
T Consensus 149 haq-------I~EKDAmIkVLQqr 165 (205)
T PF12240_consen 149 HAQ-------IAEKDAMIKVLQQR 165 (205)
T ss_pred HHH-------HHHHHHHHHHHHhh
Confidence 865 34677787666554
No 76
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=76.28 E-value=35 Score=26.67 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 019869 199 RKNRELIERIKQMAAEAQNWHYRAK 223 (334)
Q Consensus 199 krnaELeErl~ql~~E~q~Wq~~A~ 223 (334)
..+.+|++...++..|..+|+.+-.
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666666666666665543
No 77
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=75.74 E-value=89 Score=31.09 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=38.2
Q ss_pred HHHHHhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHh
Q 019869 184 AKKLQEKDMEIENMN--------RKNRELIERIKQMAAEAQNW-HYRAKYNESVVNLLKSNLQQAIS 241 (334)
Q Consensus 184 ~~rLReKe~Eie~~~--------krnaELeErl~ql~~E~q~W-q~~A~~nEa~a~~Lr~~LqQ~~~ 241 (334)
.+||.....|.+.+. .....|.-++.+|..|.-.. ..+..+.|..++.|+..|+.+-.
T Consensus 83 lKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~ 149 (310)
T PF09755_consen 83 LKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEK 149 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455555555555553 23455777788888776543 34566788899999999988753
No 78
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=75.61 E-value=39 Score=32.57 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019869 190 KDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKY 224 (334)
Q Consensus 190 Ke~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~ 224 (334)
|.+-.+.+.-...+|+|+.+.|..|++..+.+-+.
T Consensus 88 KKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~ 122 (292)
T KOG4005|consen 88 KKARMEEMEYEIKDLTEENEILQNENDSLRAINES 122 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677778888888888888877765543
No 79
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=75.21 E-value=80 Score=30.32 Aligned_cols=50 Identities=16% Similarity=0.322 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 166 DMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEA 215 (334)
Q Consensus 166 e~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~ 215 (334)
+.+..+..+....++.....++.+.+.++..+..+..+++.++.++..+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 165 (301)
T PF14362_consen 116 EIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEA 165 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555556666677777777777777777777777776644
No 80
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=74.95 E-value=96 Score=36.56 Aligned_cols=9 Identities=33% Similarity=0.814 Sum_probs=5.0
Q ss_pred ccccccCCC
Q 019869 10 VVPVFLDEN 18 (334)
Q Consensus 10 ~~~~~~~~~ 18 (334)
++|+.++.|
T Consensus 44 ~~~~ll~~~ 52 (1353)
T TIGR02680 44 LLPFLLDGK 52 (1353)
T ss_pred HHHHHhcCC
Confidence 356666553
No 81
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=74.85 E-value=13 Score=36.43 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019869 192 MEIENMNRKNRELIERIKQMAAEAQNWHYRAK 223 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~ 223 (334)
-|++-+.++|-+|++++..++.|-+-.+.+..
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888877765554443
No 82
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.60 E-value=31 Score=29.86 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=15.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYR 221 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~ 221 (334)
++.++.+++++...+..|++++..+..|...++..
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~ 95 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASAEEK 95 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 83
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=74.40 E-value=17 Score=30.94 Aligned_cols=33 Identities=27% Similarity=0.221 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019869 192 MEIENMNRKNRELIERIKQMAAEAQNWHYRAKY 224 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~ 224 (334)
+|++-++.+..||+||+.+|+.|+.-.+..+.-
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~sp 99 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLASP 99 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 488899999999999999999999987776643
No 84
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=74.25 E-value=2.9 Score=41.56 Aligned_cols=51 Identities=22% Similarity=0.499 Sum_probs=32.2
Q ss_pred cccccccccc-------------------cccceEEecCCCcccchhhH-hh-----------CCCCCCCccccc---ce
Q 019869 283 HQMICRACKA-------------------KEASVLLMPCRHLCLCKDCD-VL-----------VAVCPVCQFVKN---AS 328 (334)
Q Consensus 283 ~~~~C~iC~~-------------------~~~~vlllPC~HlclC~~C~-~~-----------l~~CPvCr~~i~---~~ 328 (334)
..+.|++|+. .+.+..|-||||+|.=+.-. +. -..||.|-.... ..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~~~ 419 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQGY 419 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCCce
Confidence 4678988886 34455678999985322211 11 168999988764 35
Q ss_pred EEEEe
Q 019869 329 VLVHL 333 (334)
Q Consensus 329 v~v~~ 333 (334)
|+++|
T Consensus 420 ikliF 424 (429)
T KOG3842|consen 420 IKLIF 424 (429)
T ss_pred EEEEE
Confidence 55543
No 85
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.16 E-value=50 Score=30.73 Aligned_cols=39 Identities=8% Similarity=0.046 Sum_probs=20.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKY 224 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~ 224 (334)
+..+...+++.......+|+++.++|..|...-+.....
T Consensus 119 ~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 119 RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555666666665555544443333
No 86
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=73.87 E-value=29 Score=31.63 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=35.6
Q ss_pred HHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 150 DQYIKVQEEYLAKGVQ-------DMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRA 222 (334)
Q Consensus 150 D~~ir~q~erlR~~le-------e~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A 222 (334)
.+|+..=++|||..+. .+.+++....+.-+...|-.-.++-++||.++.++...||+- ......++.+|
T Consensus 78 ~Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~----~~~~k~LrnKa 153 (171)
T PF04799_consen 78 RQFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEI----QSKSKTLRNKA 153 (171)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4566777788877664 577778888888888877777888888888888887665543 33444555444
Q ss_pred hhhHHHHHHHHHHHHHH
Q 019869 223 KYNESVVNLLKSNLQQA 239 (334)
Q Consensus 223 ~~nEa~a~~Lr~~LqQ~ 239 (334)
..|..+|+.-
T Consensus 154 -------~~L~~eL~~F 163 (171)
T PF04799_consen 154 -------NWLESELERF 163 (171)
T ss_dssp -------HHHHHHHHHH
T ss_pred -------HHHHHHHHHH
Confidence 4455556543
No 87
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=73.82 E-value=38 Score=37.53 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=22.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~ 213 (334)
||++|+||+|++..+..|+--++++-.
T Consensus 531 lrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 531 LRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788888888888888888888887765
No 88
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=72.57 E-value=1.4e+02 Score=32.05 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=32.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNL 231 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~ 231 (334)
.......|.+.+..+++++.+|+.+|+.+...+.....+++.....
T Consensus 200 ~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~ 245 (546)
T PF07888_consen 200 SSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDK 245 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777788888888888888888887777766655544433
No 89
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=72.09 E-value=3.2 Score=41.80 Aligned_cols=34 Identities=21% Similarity=0.543 Sum_probs=25.0
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhh-----------------CCCCCCCcccc
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----------------VAVCPVCQFVK 325 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~-----------------l~~CPvCr~~i 325 (334)
+.....|..|+-++. =|-+|-.+ -..||.||+.+
T Consensus 300 ~~~~~~C~~C~CRPm-----------WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 300 LPNEPPCQQCYCRPM-----------WCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred cccCCCCccccccch-----------HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 456678888885554 47888664 16899999986
No 90
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=72.06 E-value=21 Score=32.35 Aligned_cols=19 Identities=16% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHhHhhHHHHHHHHHh
Q 019869 138 VRTELDRQKEEFDQYIKVQ 156 (334)
Q Consensus 138 l~~~l~rq~~EiD~~ir~q 156 (334)
+...+.+.+.|+..+.+..
T Consensus 72 le~~~~~l~~ELael~r~~ 90 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSK 90 (194)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 3344445555555555444
No 91
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.92 E-value=31 Score=27.23 Aligned_cols=32 Identities=22% Similarity=0.437 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019869 193 EIENMNRKNRELIERIKQMAAEAQNWHYRAKY 224 (334)
Q Consensus 193 Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~ 224 (334)
|...+....-.|+-+..|+..|...||.+.++
T Consensus 40 e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 40 EVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667888888999999999987654
No 92
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=71.30 E-value=36 Score=27.10 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=30.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 183 LAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHY 220 (334)
Q Consensus 183 ~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~ 220 (334)
.-.+|+.|++||++++.....|+.++......+...++
T Consensus 10 L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~ 47 (76)
T PF11544_consen 10 LKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQD 47 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999998888776655443
No 93
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=71.12 E-value=27 Score=33.59 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=15.6
Q ss_pred hhHHHHHHhHhhHHHHHHHH
Q 019869 135 ADNVRTELDRQKEEFDQYIK 154 (334)
Q Consensus 135 ~~~l~~~l~rq~~EiD~~ir 154 (334)
||.+..+|++...|+|.+.+
T Consensus 159 Gd~l~~eLqkr~~~v~~l~~ 178 (289)
T COG4985 159 GDPLERELQKRLLEVETLRD 178 (289)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 68888999988888876543
No 94
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=70.77 E-value=55 Score=26.47 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=35.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019869 188 QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNL 236 (334)
Q Consensus 188 ReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~L 236 (334)
.+.+++|+++...-..|.+++.+..++...|.....+-.....+...++
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888999999999999888887766544433333333
No 95
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=70.31 E-value=1.2 Score=46.87 Aligned_cols=42 Identities=24% Similarity=0.621 Sum_probs=36.0
Q ss_pred cccccccccccccceEEecCCCcccchhhHhh---------CCCCCCCcccc
Q 019869 283 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL---------VAVCPVCQFVK 325 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~---------l~~CPvCr~~i 325 (334)
....|.+|.+...+.+.-.|-|. +|+.|... --+||+|....
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 56789999999999999999998 99999853 27999997654
No 96
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=70.14 E-value=20 Score=30.07 Aligned_cols=40 Identities=35% Similarity=0.465 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 176 LSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEA 215 (334)
Q Consensus 176 l~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~ 215 (334)
|...-...-.++++...+++++.+.+.++++.++.+..|.
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444456778888899999999999999999888775
No 97
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=70.10 E-value=1.7 Score=43.11 Aligned_cols=48 Identities=8% Similarity=0.018 Sum_probs=39.5
Q ss_pred cccccccccccccceEEecCCCcccchhhHh-----hCCCCCCCcccccceEE
Q 019869 283 HQMICRACKAKEASVLLMPCRHLCLCKDCDV-----LVAVCPVCQFVKNASVL 330 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~HlclC~~C~~-----~l~~CPvCr~~i~~~v~ 330 (334)
....|..|+.+..-+.+.||+|-++|..|.. +.+.||+|...+.....
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~ 187 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQ 187 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhc
Confidence 4568999999999999999999999988744 45789999887655443
No 98
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=69.57 E-value=1.7e+02 Score=32.37 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 190 KDMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 190 Ke~Eie~~~krnaELeErl~ql~~ 213 (334)
-.+++..++.+.-+|++.+..+..
T Consensus 160 Hq~~l~sL~~k~~~Le~~L~~le~ 183 (739)
T PF07111_consen 160 HQEALASLTSKAEELEKSLESLET 183 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777888887776665
No 99
>PRK09039 hypothetical protein; Validated
Probab=69.45 E-value=1.3e+02 Score=30.09 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=46.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 188 QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 188 ReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
.++..++..++.+...|+.++.++..+-.+-+..-++.+..+..|...|+.+++.
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888999999999999888888888888888899999999988865
No 100
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=69.37 E-value=2.8 Score=40.43 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=25.5
Q ss_pred ccccccccccccceEEecC-----CCcccchhhHhh----CCCCCCCcccccceEEEE
Q 019869 284 QMICRACKAKEASVLLMPC-----RHLCLCKDCDVL----VAVCPVCQFVKNASVLVH 332 (334)
Q Consensus 284 ~~~C~iC~~~~~~vlllPC-----~HlclC~~C~~~----l~~CPvCr~~i~~~v~v~ 332 (334)
...|+||+..+.-.+|.+= ||+ .|.-|... --+||.|.......++.|
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 4699999999887777664 566 79999874 269999999988877765
No 101
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=69.25 E-value=85 Score=36.58 Aligned_cols=88 Identities=22% Similarity=0.300 Sum_probs=46.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019869 148 EFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNES 227 (334)
Q Consensus 148 EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa 227 (334)
|+|+=+....++++....+..+ ..++|+----..+-.++.+.++++.++.+++..|++.++-+..+++. +.....
T Consensus 465 ~~~keL~e~i~~lk~~~~el~~-~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~----~~~~~~ 539 (1317)
T KOG0612|consen 465 EMDKELEETIEKLKSEESELQR-EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDN----AADSLE 539 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh
Confidence 3444444445555544444443 22223222222333466666777777777777777666655444332 333344
Q ss_pred HHHHHHHHHHHHH
Q 019869 228 VVNLLKSNLQQAI 240 (334)
Q Consensus 228 ~a~~Lr~~LqQ~~ 240 (334)
.++.|+.+|++..
T Consensus 540 kv~~~rk~le~~~ 552 (1317)
T KOG0612|consen 540 KVNSLRKQLEEAE 552 (1317)
T ss_pred hHHHHHHHHHHhh
Confidence 5677777776543
No 102
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=69.04 E-value=65 Score=27.24 Aligned_cols=64 Identities=17% Similarity=0.364 Sum_probs=35.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHH
Q 019869 149 FDQYIKVQEEYLAKGVQDMKQ---RHMASFLSAIEKGLAKKLQEKD----MEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 149 iD~~ir~q~erlR~~lee~rq---rh~r~ll~ave~~~~~rLReKe----~Eie~~~krnaELeErl~ql~ 212 (334)
+|.++.--.+.++..+++.+. .+...+=..++..+.+-|.... +||+.+.+|..+|+.++..|.
T Consensus 46 ~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 46 FDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 444443333444444444432 2333444455555555554443 688888888888888887765
No 103
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=68.84 E-value=17 Score=30.26 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=30.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 185 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYR 221 (334)
Q Consensus 185 ~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~ 221 (334)
.++++...+++.+.+++.+|+++.++|..|...|+.-
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3577788888888888888888888888888888763
No 104
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=68.71 E-value=84 Score=34.71 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019869 180 EKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQ 237 (334)
Q Consensus 180 e~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~Lq 237 (334)
...+.++||+|+.|-+.+.+++- +.+..|.-|-+..+.+-...|.+--.++.++.
T Consensus 472 qs~iIkKLRAk~ke~etl~~K~g---e~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~ 526 (961)
T KOG4673|consen 472 QSAIIKKLRAKIKEAETLEEKKG---ELITKLQSEENKLKSILRDKEETEKLLQETIE 526 (961)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhh---hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45678999999999888877754 44555556655555555444444333333333
No 105
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=68.47 E-value=46 Score=24.69 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019869 202 RELIERIKQMAAEAQNWHY 220 (334)
Q Consensus 202 aELeErl~ql~~E~q~Wq~ 220 (334)
.+|++++..|..|+..+..
T Consensus 29 ~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 29 EELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 106
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=67.61 E-value=4.5 Score=29.08 Aligned_cols=36 Identities=33% Similarity=0.887 Sum_probs=24.1
Q ss_pred ccccccc--cccceEEecCC-----CcccchhhHhh------CCCCCCCc
Q 019869 286 ICRACKA--KEASVLLMPCR-----HLCLCKDCDVL------VAVCPVCQ 322 (334)
Q Consensus 286 ~C~iC~~--~~~~vlllPC~-----HlclC~~C~~~------l~~CPvCr 322 (334)
.|+||++ .+.+.++.||. |+ +=..|... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899996 56677889995 33 23355442 35899995
No 107
>PRK11637 AmiB activator; Provisional
Probab=67.61 E-value=1.5e+02 Score=30.16 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=11.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~ 213 (334)
|.+.+.+|+.+.++..+|++.+.++..
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 108
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=67.58 E-value=19 Score=30.42 Aligned_cols=42 Identities=19% Similarity=0.450 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHH
Q 019869 164 VQDMKQRHMASFLSAIEKGLAKK--LQEKDMEIENMNRKNRELIER 207 (334)
Q Consensus 164 lee~rqrh~r~ll~ave~~~~~r--LReKe~Eie~~~krnaELeEr 207 (334)
++++-+|.++.++.-.+ ++++ +-+..++|+.++++.+.|+..
T Consensus 62 ~e~K~~r~i~~ml~~~~--~~r~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 62 LEEKIPRKIEEMLSDLE--VARQSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred HHHhhhHHHHHHHhhcc--ccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555554 2221 233334455555554444443
No 109
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=67.18 E-value=42 Score=25.28 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=35.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 019869 154 KVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQ 210 (334)
Q Consensus 154 r~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~q 210 (334)
--...+++.+|...-+|....|+.... -..|.+.+.++|.||+..++|
T Consensus 11 p~~~~~~W~~L~~~l~rY~~vL~~R~~---------l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 11 PDEKIRLWDALENFLKRYNKVLLDRAA---------LIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHh
Confidence 345667777888877777766655443 466889999999999988876
No 110
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=67.17 E-value=2.4 Score=30.79 Aligned_cols=25 Identities=24% Similarity=0.603 Sum_probs=12.8
Q ss_pred ecCCCcccchhhHhhC-----CCCCCCcccc
Q 019869 300 MPCRHLCLCKDCDVLV-----AVCPVCQFVK 325 (334)
Q Consensus 300 lPC~HlclC~~C~~~l-----~~CPvCr~~i 325 (334)
-||++. +|..|...+ ..||.||.+.
T Consensus 18 C~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 18 CECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp STTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 367777 899997653 6899999864
No 111
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=67.04 E-value=1.3e+02 Score=32.16 Aligned_cols=60 Identities=18% Similarity=0.328 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 157 EEYLAKGVQDMKQRHMAS--FLSAIEKGL---AKKLQEKDMEIENMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 157 ~erlR~~lee~rqrh~r~--ll~ave~~~---~~rLReKe~Eie~~~krnaELeErl~ql~~E~q 216 (334)
..+|+..+.+.|+++.-+ .+..++..+ ..+|-++++|+.-+.++...|++.++.|..|+.
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~ 179 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENS 179 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555554433 222222222 355677788888888888888888888888774
No 112
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.68 E-value=50 Score=35.69 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=6.8
Q ss_pred Cccccccccccc
Q 019869 102 TGLRLSYDDDER 113 (334)
Q Consensus 102 tglrls~~~~~~ 113 (334)
-++.++++||++
T Consensus 332 r~~~~~~~ddH~ 343 (652)
T COG2433 332 RTLKISVSDDHE 343 (652)
T ss_pred hhcCCCCCCchH
Confidence 345566666643
No 113
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=66.66 E-value=2.8 Score=42.49 Aligned_cols=49 Identities=20% Similarity=0.529 Sum_probs=39.2
Q ss_pred cccccccccccccccceEE-ecCCCcccchhhHhhC----CCCCCCcccccceEE
Q 019869 281 RNHQMICRACKAKEASVLL-MPCRHLCLCKDCDVLV----AVCPVCQFVKNASVL 330 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vll-lPC~HlclC~~C~~~l----~~CPvCr~~i~~~v~ 330 (334)
+.....|.+|..--.+-+. ..|+|. +|..|.... ..||+|+..+...-.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhc
Confidence 4567899999998888777 599999 999998753 699999887755433
No 114
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=66.23 E-value=1.8e+02 Score=32.03 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019869 204 LIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQ 237 (334)
Q Consensus 204 LeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~Lq 237 (334)
++.|.++|+.|.+..+.-.+..|.....|..+++
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555554444444444444444444443
No 115
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.68 E-value=64 Score=34.02 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHhcC
Q 019869 192 MEIENMNRKNRELIERIKQMAAEAQNW--HYRAKYNESVVNLLKSNLQQAISQG 243 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~~E~q~W--q~~A~~nEa~a~~Lr~~LqQ~~~~~ 243 (334)
.-|+++++|+++|..|+-++..--..- +..+..-+. +.|+.+|+-+++++
T Consensus 376 ~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~E--E~Lr~Kldtll~~l 427 (508)
T KOG3091|consen 376 AKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDE--EELRAKLDTLLAQL 427 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccH--HHHHHHHHHHHHHh
Confidence 456677888888888887776532222 222222111 23556665555443
No 116
>smart00338 BRLZ basic region leucin zipper.
Probab=65.44 E-value=53 Score=24.40 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 190 KDMEIENMNRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 190 Ke~Eie~~~krnaELeErl~ql~~E~q~ 217 (334)
.+.++..+...|.+|..++..|..|...
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 117
>PRK02119 hypothetical protein; Provisional
Probab=64.88 E-value=50 Score=25.75 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 194 IENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 194 ie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
+..+..|..+||.++.-.+.-....-.........++.|+.+|..+...
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444443344444455556677777666543
No 118
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=64.61 E-value=3.5 Score=32.86 Aligned_cols=30 Identities=20% Similarity=0.579 Sum_probs=22.2
Q ss_pred cccccccccccc--cceEEecCCCcccchhhHh
Q 019869 283 HQMICRACKAKE--ASVLLMPCRHLCLCKDCDV 313 (334)
Q Consensus 283 ~~~~C~iC~~~~--~~vlllPC~HlclC~~C~~ 313 (334)
....|.+|...- ..+++.||+|. +-..|..
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 456799998753 46788899998 6777754
No 119
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=64.30 E-value=1.5e+02 Score=28.96 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=35.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 019869 147 EEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELI 205 (334)
Q Consensus 147 ~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELe 205 (334)
.+|.+-|+.-+..+...++..+ +...=|.+-|...-.++..|..|+++..||..-|+
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~~~--~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQTQ--QQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655555443 22233455566666778888888888888866554
No 120
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=64.20 E-value=86 Score=26.30 Aligned_cols=51 Identities=24% Similarity=0.435 Sum_probs=25.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019869 153 IKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 153 ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~ 212 (334)
||.|+.-|+.++-+-..... .+...|++||.+|.++.-.+--|..|..||.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~---------~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~ 60 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNA---------ELKEQLKEKEQALRKLEQENDSLTFRNQQLT 60 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666655443332 1223355555555554444444444444444
No 121
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=63.36 E-value=78 Score=26.52 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=22.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRA 222 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A 222 (334)
.|.+--++|+.+.+...+|.|....|..|++..+.+.
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445666666666666666667777766555443
No 122
>PRK04863 mukB cell division protein MukB; Provisional
Probab=63.06 E-value=2.5e+02 Score=33.80 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 191 DMEIENMNRKNRELIERIKQMAAEAQNWH 219 (334)
Q Consensus 191 e~Eie~~~krnaELeErl~ql~~E~q~Wq 219 (334)
+++++.+..+..++++++..+..+...|+
T Consensus 368 eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444443
No 123
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=62.25 E-value=72 Score=24.70 Aligned_cols=59 Identities=12% Similarity=0.249 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 156 QEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 156 q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q 216 (334)
...++...+.+.++.|.+.|...... ..-=++-+.=...+.+....+..+++++.....
T Consensus 15 ~i~~i~~~~~~l~~l~~~~l~~~~~d--~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~ 73 (103)
T PF00804_consen 15 DIDKIKEKLNELRKLHKKILSSPDQD--SELKRELDELTDEIKQLFQKIKKRLKQLSKDNE 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455555666677776666655532 111122333344455566667788888777743
No 124
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=61.85 E-value=77 Score=31.22 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 019869 170 RHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERI 208 (334)
Q Consensus 170 rh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl 208 (334)
||.++-|.-.+ .||.+.|.||+.++.++.-++|.+
T Consensus 71 RHLkakLkes~----~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 71 RHLKAKLKESE----NRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44444444444 356666666666666665555544
No 125
>smart00338 BRLZ basic region leucin zipper.
Probab=60.70 E-value=67 Score=23.84 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019869 200 KNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNL 236 (334)
Q Consensus 200 rnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~L 236 (334)
...+|+.++..|..|+..++..+..-+.....|+..+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777777777777666665555555555443
No 126
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=60.45 E-value=42 Score=27.44 Aligned_cols=38 Identities=13% Similarity=0.341 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 177 SAIEKGLAKKLQE---KDMEIENMNRKNRELIERIKQMAAE 214 (334)
Q Consensus 177 ~ave~~~~~rLRe---Ke~Eie~~~krnaELeErl~ql~~E 214 (334)
..+|+.+.+|+-. -++||+++..-.++|++++.++..+
T Consensus 27 qlmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~~ 67 (88)
T PF05121_consen 27 QLMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCER 67 (88)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555422 5799999999999999999998854
No 127
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=59.97 E-value=97 Score=32.53 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=22.2
Q ss_pred HHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019869 138 VRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRH 171 (334)
Q Consensus 138 l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh 171 (334)
|..+++.-+.|+..++ .++++|+.+-++.|+|.
T Consensus 64 lva~~k~~r~~~~~l~-~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 64 LVAEVKELRKRLAKLI-SENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 6677777778887765 45677776666655544
No 128
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=59.93 E-value=1.8e+02 Score=28.64 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 019869 176 LSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAA-EAQNWHYRA 222 (334)
Q Consensus 176 l~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~-E~q~Wq~~A 222 (334)
+..-|....+.|++.|.|-+.+.+...+|++..+.+.. |.+.|+...
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n 102 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYN 102 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777778888888888888888777777754 445666544
No 129
>PRK04406 hypothetical protein; Provisional
Probab=58.95 E-value=85 Score=24.64 Aligned_cols=47 Identities=2% Similarity=0.136 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 196 NMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 196 ~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
.+..|..+||.++.-.+.-....-...-.....+..|+.+|..+...
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555565555555444444444445555556677777666544
No 130
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=58.74 E-value=24 Score=32.78 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 193 EIENMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 193 Eie~~~krnaELeErl~ql~~E~q 216 (334)
|+.++.|++++|++++.++..++.
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666665544
No 131
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=58.69 E-value=3e+02 Score=32.51 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019869 195 ENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 195 e~~~krnaELeErl~ql~~ 213 (334)
.++.++..||+-++..|..
T Consensus 1615 ~~a~q~~~eL~~~~e~lk~ 1633 (1758)
T KOG0994|consen 1615 TSATQQLGELETRMEELKH 1633 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555544444443
No 132
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=58.62 E-value=83 Score=25.25 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019869 193 EIENMNRKNRELIERIKQMAAEAQNWHYRAKY 224 (334)
Q Consensus 193 Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~ 224 (334)
|++.+.--..+|+....++..|...|+.+.+.
T Consensus 40 e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 40 EVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444567888899999999999987654
No 133
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=58.55 E-value=1.8e+02 Score=28.19 Aligned_cols=29 Identities=31% Similarity=0.339 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 192 MEIENMNRKNRELIERIKQMAAEAQNWHY 220 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~~E~q~Wq~ 220 (334)
.||..-++-..+|++.+.+|..|.+..+.
T Consensus 193 kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 193 KEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555554333
No 134
>PRK11637 AmiB activator; Provisional
Probab=58.51 E-value=1.5e+02 Score=29.97 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=12.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~ 213 (334)
|.+.+.+|+.+.++..++++++.+...
T Consensus 98 i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 98 LNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 135
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=57.98 E-value=8.7 Score=31.16 Aligned_cols=41 Identities=22% Similarity=0.531 Sum_probs=27.6
Q ss_pred ccccccccc--ccceEEecCCCcccchhhHhh-------CCCCCCCccccc
Q 019869 285 MICRACKAK--EASVLLMPCRHLCLCKDCDVL-------VAVCPVCQFVKN 326 (334)
Q Consensus 285 ~~C~iC~~~--~~~vlllPC~HlclC~~C~~~-------l~~CPvCr~~i~ 326 (334)
..|..|... .-.+++--|+|. +=.-|..+ -..||+||++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 345555543 223467789998 88888543 379999998763
No 136
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=57.07 E-value=49 Score=30.93 Aligned_cols=48 Identities=31% Similarity=0.452 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 019869 158 EYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIE 206 (334)
Q Consensus 158 erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeE 206 (334)
++-|..|+|.||.-.-..|.-.+. .-+.+-.|++||..+...|.+|.+
T Consensus 106 e~YWk~lAE~RR~AL~eaL~ENe~-Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 106 ENYWKELAEERRKALEEALEENEK-LHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566555433333333332 223344566666666655555554
No 137
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=57.00 E-value=1.4e+02 Score=29.55 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 019869 139 RTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAA---EA 215 (334)
Q Consensus 139 ~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~---E~ 215 (334)
..+|++...||+.+=.....++|..|.+.-..+....=...+ .-..|.+++..|+....+..++++.++.+.. ++
T Consensus 188 ~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e--~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~ 265 (312)
T smart00787 188 LRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE--LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQC 265 (312)
T ss_pred HHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 216 QNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 216 q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
+.|-..-... |+.+++.+...
T Consensus 266 r~~t~~Ei~~------Lk~~~~~Le~l 286 (312)
T smart00787 266 RGFTFKEIEK------LKEQLKLLQSL 286 (312)
T ss_pred CCCCHHHHHH------HHHHHHHHHHH
No 138
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=56.55 E-value=4.3 Score=29.61 Aligned_cols=41 Identities=27% Similarity=0.771 Sum_probs=23.5
Q ss_pred ccccccccccceEEecCC-CcccchhhHhhC----CCCCCCcccccceE
Q 019869 286 ICRACKAKEASVLLMPCR-HLCLCKDCDVLV----AVCPVCQFVKNASV 329 (334)
Q Consensus 286 ~C~iC~~~~~~vlllPC~-HlclC~~C~~~l----~~CPvCr~~i~~~v 329 (334)
-|+.|.-...+.+ -|. |+ +|..|-..| ..||+|..+....+
T Consensus 4 nCKsCWf~~k~Li--~C~dHY-LCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDHY-LCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSEE--E-SS-E-EEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCee--eecchh-HHHHHHHHHhccccCCCcccCcCcccc
Confidence 5888888777655 464 66 999999876 89999998876543
No 139
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=55.17 E-value=2.4e+02 Score=28.50 Aligned_cols=34 Identities=15% Similarity=0.307 Sum_probs=18.3
Q ss_pred HHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 019869 183 LAKKLQEKDMEIENMNR-------KNRELIERIKQMAAEAQ 216 (334)
Q Consensus 183 ~~~rLReKe~Eie~~~k-------rnaELeErl~ql~~E~q 216 (334)
..+|++|.|.|--++.+ ++-.|+.+++++..++.
T Consensus 132 ~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~~~R~~ek~n~ 172 (426)
T KOG2008|consen 132 ATQRVMEAEQEKTRAELVHASTAARYLALMGRMRQLEKKNK 172 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34555665555544432 23446666666666653
No 140
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=54.97 E-value=3.5e+02 Score=30.32 Aligned_cols=85 Identities=19% Similarity=0.294 Sum_probs=65.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019869 154 KVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLK 233 (334)
Q Consensus 154 r~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr 233 (334)
+.|.+.|+-.|.. +..|...|.+-||+ .--+|-+|+..+.+....+..+++....+..|.....+...-.+..++.|+
T Consensus 321 r~hi~~lkesl~~-ke~~~~~Lqsdve~-Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq 398 (775)
T PF10174_consen 321 RQHIEVLKESLRA-KEQEAEMLQSDVEA-LRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ 398 (775)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666655543 44556666666664 667899999999999999999999999999999888888888888888888
Q ss_pred HHHHHHH
Q 019869 234 SNLQQAI 240 (334)
Q Consensus 234 ~~LqQ~~ 240 (334)
..++.+.
T Consensus 399 ~kie~Le 405 (775)
T PF10174_consen 399 KKIENLE 405 (775)
T ss_pred HHHHHHH
Confidence 8765443
No 141
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=54.74 E-value=1.4e+02 Score=30.89 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 166 DMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 166 e~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
++|..+.+.=+...+ +++++...+.+++.+..++++..+.++..+--.-..--...+..+..+..+|+.+..+
T Consensus 37 ~~~l~q~q~ei~~~~----~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 37 DKQLKQIQKEIAALE----KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
No 142
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=54.61 E-value=1e+02 Score=24.34 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=14.9
Q ss_pred hhhhhHHHHHHhHhhHHHHHHH
Q 019869 132 LSLADNVRTELDRQKEEFDQYI 153 (334)
Q Consensus 132 ~~l~~~l~~~l~rq~~EiD~~i 153 (334)
++.++.|+.-|..-.+|++++=
T Consensus 9 ~~p~~~Ls~vl~~LqDE~~hm~ 30 (79)
T PF06657_consen 9 QSPGEALSEVLKALQDEFGHMK 30 (79)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777777778887653
No 143
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=54.35 E-value=2.9e+02 Score=29.23 Aligned_cols=59 Identities=25% Similarity=0.313 Sum_probs=40.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH----HH--HH---------HHHHHHHhhhHHHHHHHHHHHHHHHhcC
Q 019869 185 KKLQEKDMEIENMNRKNRELIERIKQM----AA--EA---------QNWHYRAKYNESVVNLLKSNLQQAISQG 243 (334)
Q Consensus 185 ~rLReKe~Eie~~~krnaELeErl~ql----~~--E~---------q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~~ 243 (334)
+-|-+||+||+++...--+||.-.... .. |. ..+|..-++|.+.-..|++.|+.+.+++
T Consensus 453 k~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 453 KTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 558899999999998888888554222 11 22 2355666677777778888888877653
No 144
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.08 E-value=2.2e+02 Score=32.62 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHHHH
Q 019869 191 DMEIENMNRKNRELIERIKQMAAEAQNWH-------YRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 191 e~Eie~~~krnaELeErl~ql~~E~q~Wq-------~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
|+=++.+..+|.+||||++.|+.|..... .++..|......||.+|+++.
T Consensus 447 E~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~ 503 (1243)
T KOG0971|consen 447 EEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAK 503 (1243)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777888888888888888765443 455666667778888888774
No 145
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.95 E-value=2.4e+02 Score=28.27 Aligned_cols=51 Identities=16% Similarity=0.369 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 164 VQDMKQRHMASFLSAIE---KGLAKKLQEKDMEIENMNRKNRELIERIKQMAAE 214 (334)
Q Consensus 164 lee~rqrh~r~ll~ave---~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E 214 (334)
.+.+|+-|...+-+.-| ....+|+++||+|+..++|...+-.++++++..|
T Consensus 324 ~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~e 377 (406)
T KOG3859|consen 324 YEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQE 377 (406)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544332 3345677788888777777766655555555443
No 146
>PF14282 FlxA: FlxA-like protein
Probab=53.94 E-value=62 Score=26.79 Aligned_cols=52 Identities=17% Similarity=0.353 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 191 DMEIENMNRKNRELIERIKQMAA-EA---QNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 191 e~Eie~~~krnaELeErl~ql~~-E~---q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
+..|+.+.++...|.+.++.|.. +. ..-+.....-.+-+..|.++|.++...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777666 11 222334444444555566666665543
No 147
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=53.85 E-value=3.7e+02 Score=30.43 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 193 EIENMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 193 Eie~~~krnaELeErl~ql~~E~q 216 (334)
+.+...||.+|=++|.+|-+.|.+
T Consensus 957 k~e~e~kRK~eEeqr~~qee~e~~ 980 (1259)
T KOG0163|consen 957 KAEMETKRKAEEEQRKAQEEEERR 980 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH
Confidence 334444555555555555444443
No 148
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=53.53 E-value=2.1e+02 Score=27.33 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019869 173 ASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNL 236 (334)
Q Consensus 173 r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~L 236 (334)
..-|..++......+...+..|..+.....+|...+.+...|.+.+-.+-..-+..+++.|.=|
T Consensus 243 e~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 243 ERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3334444555555566666777777777777777777777777777776666666655555544
No 149
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=53.25 E-value=3.6e+02 Score=29.98 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=27.9
Q ss_pred HHHHhHhhHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHH
Q 019869 139 RTELDRQKEEFDQYIKVQ-------------EEYLAKGVQDMKQRHMASFLSA 178 (334)
Q Consensus 139 ~~~l~rq~~EiD~~ir~q-------------~erlR~~lee~rqrh~r~ll~a 178 (334)
..++.+...|.|++.... -.+||..|.|.+-|..|.|-.-
T Consensus 47 ~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy 99 (717)
T PF09730_consen 47 RQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445666777888877654 4468888888888887766543
No 150
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=52.93 E-value=3e+02 Score=29.05 Aligned_cols=9 Identities=0% Similarity=0.121 Sum_probs=3.9
Q ss_pred cceEEecCC
Q 019869 295 ASVLLMPCR 303 (334)
Q Consensus 295 ~~vlllPC~ 303 (334)
..+|++.|.
T Consensus 244 p~~v~ls~f 252 (514)
T TIGR03319 244 PEAVILSGF 252 (514)
T ss_pred CCeEEecCC
Confidence 334444443
No 151
>PRK12704 phosphodiesterase; Provisional
Probab=52.87 E-value=3.1e+02 Score=29.07 Aligned_cols=8 Identities=0% Similarity=0.268 Sum_probs=3.1
Q ss_pred cceEEecC
Q 019869 295 ASVLLMPC 302 (334)
Q Consensus 295 ~~vlllPC 302 (334)
..++++.|
T Consensus 250 p~~v~ls~ 257 (520)
T PRK12704 250 PEAVILSG 257 (520)
T ss_pred CCeEEEec
Confidence 33444433
No 152
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=52.38 E-value=1.1e+02 Score=23.97 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=8.6
Q ss_pred hHhhHHHHHHHHHhHHH
Q 019869 143 DRQKEEFDQYIKVQEEY 159 (334)
Q Consensus 143 ~rq~~EiD~~ir~q~er 159 (334)
..-..|++..|+...++
T Consensus 23 ~~~~~e~e~~~r~~l~~ 39 (79)
T PF04380_consen 23 QGPREEIEKNIRARLQS 39 (79)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 34445566555554333
No 153
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=52.34 E-value=1.1e+02 Score=25.80 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=23.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAK 223 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~ 223 (334)
|.+--.+++.+.....+|.|....|..|++..+.+..
T Consensus 17 l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 17 LGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666677777777777777777766555444
No 154
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=51.98 E-value=72 Score=25.68 Aligned_cols=28 Identities=36% Similarity=0.491 Sum_probs=23.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAAE 214 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~E 214 (334)
|-.-+.||++..++.++|++|++.|...
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~q 30 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQ 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345669999999999999999998864
No 155
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.37 E-value=1.7e+02 Score=27.42 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019869 193 EIENMNRKNRELIERIKQ 210 (334)
Q Consensus 193 Eie~~~krnaELeErl~q 210 (334)
|++.+...+..|+..+.+
T Consensus 64 e~e~L~~~~~~l~~~v~~ 81 (251)
T PF11932_consen 64 EIENLEVYNEQLERQVAS 81 (251)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 156
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.36 E-value=2.3e+02 Score=31.91 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 019869 193 EIENMNRK 200 (334)
Q Consensus 193 Eie~~~kr 200 (334)
|+|+.++.
T Consensus 404 ElEkqRql 411 (1118)
T KOG1029|consen 404 ELEKQRQL 411 (1118)
T ss_pred HHHHHHHH
Confidence 33333333
No 157
>PRK09039 hypothetical protein; Validated
Probab=50.60 E-value=2.7e+02 Score=27.76 Aligned_cols=42 Identities=7% Similarity=0.033 Sum_probs=24.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESV 228 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~ 228 (334)
+.....||+.++++.+.|++.+.-++.....-+..-.+.+..
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~ 180 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR 180 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455777777777777777766666555554444444433
No 158
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=50.40 E-value=1.7e+02 Score=25.31 Aligned_cols=88 Identities=18% Similarity=0.283 Sum_probs=25.7
Q ss_pred hHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 136 DNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEA 215 (334)
Q Consensus 136 ~~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~ 215 (334)
++|..-++.|..+|..+ +.....+...+.+. ++|.......+ +.+.++..+|.-|+=++..=.
T Consensus 33 ~dL~~R~~~Q~~~~~~~-~~~l~~i~~~l~~L-~~~~~~~~~rl---------------~~~r~r~~~L~hR~l~v~~~~ 95 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQH-RERLKEINDKLEEL-QKHDLETSARL---------------EEARRRHQELSHRLLRVLRKQ 95 (141)
T ss_dssp -------------HHHH-HHHHHHHHHHHHHH-HHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHhHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 56777788887777643 23333344444454 55544443333 356666666666665554422
Q ss_pred HHH--HHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 216 QNW--HYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 216 q~W--q~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
+.- ++.+...+. ..|+..|+.+...
T Consensus 96 eilr~~g~~l~~eE--e~L~~~le~l~~~ 122 (141)
T PF13874_consen 96 EILRNRGYALSPEE--EELRKRLEALEAQ 122 (141)
T ss_dssp HHHHH------------------------
T ss_pred HHHHHcCCCCCHHH--HHHHHHHHHHHHH
Confidence 222 223332222 3466666666544
No 159
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=50.36 E-value=3.3e+02 Score=28.76 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=30.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019869 185 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 185 ~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
..|++|-.-++++......+++|...+..|-+.-+-.-..--..+-.|+..+++.+
T Consensus 439 ~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~I 494 (507)
T PF05600_consen 439 ESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADI 494 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666777777777777777666666555433333332233334455554433
No 160
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=50.34 E-value=4 Score=40.60 Aligned_cols=47 Identities=30% Similarity=0.701 Sum_probs=37.3
Q ss_pred ccccccccccccccce-EEecCCCcccchhhHhh----CCCCCCCcccccceE
Q 019869 282 NHQMICRACKAKEASV-LLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASV 329 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~v-lllPC~HlclC~~C~~~----l~~CPvCr~~i~~~v 329 (334)
.....|.+|..=..+. .+.-|-|. +|+.|.-. ...||.|...|.++.
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred ccceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 3567899999876654 45569999 99999764 589999999988764
No 161
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=50.22 E-value=3.1e+02 Score=28.44 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=38.3
Q ss_pred hHHHHHHhHhhHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 019869 136 DNVRTELDRQKEEFDQ------YIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIK 209 (334)
Q Consensus 136 ~~l~~~l~rq~~EiD~------~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ 209 (334)
|||..+|..-+.|+.. -+..+-|+.|.+|+..|+ -+.++..--..+-+-+-..-.|+.++.++...|..+++
T Consensus 77 ddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~--e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~ 154 (499)
T COG4372 77 DDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQ--EREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLK 154 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666555555542 223333444545554332 22222222222222233344667777777777777776
Q ss_pred HHHHHHH
Q 019869 210 QMAAEAQ 216 (334)
Q Consensus 210 ql~~E~q 216 (334)
+|..+.+
T Consensus 155 ~l~~qr~ 161 (499)
T COG4372 155 TLAEQRR 161 (499)
T ss_pred HHHHHHH
Confidence 6665443
No 162
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=50.20 E-value=65 Score=28.10 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=26.8
Q ss_pred HHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019869 174 SFLSAIEKGLA---KKLQEKDMEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 174 ~ll~ave~~~~---~rLReKe~Eie~~~krnaELeErl~ql~ 212 (334)
+++..-|..+- ..++.||.||..++++..++.-..+.|+
T Consensus 87 sli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 87 SLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444443332 3478999999999999888877766654
No 163
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=50.08 E-value=1.8e+02 Score=25.46 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 177 SAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 177 ~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
..+| ..-+|+.-.|+|++.+.++..+..++++++...+...-+.....+.....+-..++++
T Consensus 73 ~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 73 SNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344 5678899999999999999999999999998888777777766666655555555544
No 164
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=49.99 E-value=6.3 Score=39.63 Aligned_cols=41 Identities=22% Similarity=0.629 Sum_probs=30.3
Q ss_pred cccccccc----ccceEEecCCCcccchhhHhhC-----CCCCCCcccccc
Q 019869 286 ICRACKAK----EASVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKNA 327 (334)
Q Consensus 286 ~C~iC~~~----~~~vlllPC~HlclC~~C~~~l-----~~CPvCr~~i~~ 327 (334)
.|..|.+. .++..=.|||-. +|..|...+ ..||.||...+.
T Consensus 16 ~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 48888874 445555677766 899998753 899999987643
No 165
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=49.96 E-value=4.3 Score=40.12 Aligned_cols=42 Identities=29% Similarity=0.498 Sum_probs=28.4
Q ss_pred cccccccccccc---ceEEecCCCcccchhhHhh---------------------------CCCCCCCccccc
Q 019869 284 QMICRACKAKEA---SVLLMPCRHLCLCKDCDVL---------------------------VAVCPVCQFVKN 326 (334)
Q Consensus 284 ~~~C~iC~~~~~---~vlllPC~HlclC~~C~~~---------------------------l~~CPvCr~~i~ 326 (334)
.+.|+||+-..+ .++..+|.|+ +=..|..+ -..|||||..|.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 456777766544 3778899999 44445332 157999999884
No 166
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.58 E-value=6.9 Score=38.22 Aligned_cols=43 Identities=19% Similarity=0.533 Sum_probs=31.7
Q ss_pred ccccccccccccc----------ceEEecCCCcccchhhHh------hCCCCCCCccccc
Q 019869 283 HQMICRACKAKEA----------SVLLMPCRHLCLCKDCDV------LVAVCPVCQFVKN 326 (334)
Q Consensus 283 ~~~~C~iC~~~~~----------~vlllPC~HlclC~~C~~------~l~~CPvCr~~i~ 326 (334)
+...|.+|..+-- ++.-+.|+|. +=+.|.. +..+||.|...++
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhh
Confidence 5678999987533 3345899998 6666654 4689999988765
No 167
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=49.30 E-value=3.7e+02 Score=28.93 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=9.3
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 019869 184 AKKLQEKDMEIENMNRKN 201 (334)
Q Consensus 184 ~~rLReKe~Eie~~~krn 201 (334)
..|+++-+++|..+..+.
T Consensus 219 ~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 219 RQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555554443
No 168
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=49.14 E-value=57 Score=27.07 Aligned_cols=27 Identities=11% Similarity=0.316 Sum_probs=19.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~ 213 (334)
+.+.+.|++++..+|.+|++++..|..
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445566777777777778888777765
No 169
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=49.01 E-value=60 Score=32.12 Aligned_cols=41 Identities=24% Similarity=0.546 Sum_probs=28.3
Q ss_pred ccccccccccccceEEecC------CCcccchhhHhh--C--CCCCCCcccc
Q 019869 284 QMICRACKAKEASVLLMPC------RHLCLCKDCDVL--V--AVCPVCQFVK 325 (334)
Q Consensus 284 ~~~C~iC~~~~~~vlllPC------~HlclC~~C~~~--l--~~CPvCr~~i 325 (334)
...|+||+..+..-++..- ||+ .|.-|... + .+||.|....
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL-~CslC~teW~~~R~~C~~Cg~~~ 234 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYL-SCSLCATEWHYVRVKCSHCEESK 234 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEE-EcCCCCCcccccCccCCCCCCCC
Confidence 5589999998865444332 344 78888764 2 6899998764
No 170
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=48.97 E-value=2.2e+02 Score=30.28 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 019869 155 VQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQ 210 (334)
Q Consensus 155 ~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~q 210 (334)
.|.+||++.+++-.+.+.|.- --|++.++++.+++++...|+-+++.
T Consensus 28 ~ef~rl~k~fed~~ek~~r~~---------ae~~~~~~~L~Ka~tk~~~ldvklkh 74 (604)
T KOG3564|consen 28 DEFIRLRKDFEDFEEKWKRTD---------AELGKYKDLLAKAETKRSALDVKLKH 74 (604)
T ss_pred HHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHhhhhccchHHH
Confidence 344456666665554444321 11344555666666666655555443
No 171
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=48.64 E-value=1.5e+02 Score=32.87 Aligned_cols=84 Identities=24% Similarity=0.246 Sum_probs=43.4
Q ss_pred HHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019869 153 IKVQEEYLAKGVQDMKQR------HMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNE 226 (334)
Q Consensus 153 ir~q~erlR~~lee~rqr------h~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nE 226 (334)
+..+.+++-..|+++|++ |...|...+++...--++|.-+-+++.++...+++.--+++..-..+-.......
T Consensus 168 l~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~- 246 (916)
T KOG0249|consen 168 LEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDI- 246 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-
Confidence 345677777777777765 4455666666544444444444555555554444444444443333333333333
Q ss_pred HHHHHHHHHHHHHH
Q 019869 227 SVVNLLKSNLQQAI 240 (334)
Q Consensus 227 a~a~~Lr~~LqQ~~ 240 (334)
..|+.+++|+-
T Consensus 247 ---E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 247 ---EDLRGELDQLR 257 (916)
T ss_pred ---HHHHHHHHHHH
Confidence 33556665554
No 172
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=48.35 E-value=2.3e+02 Score=26.36 Aligned_cols=77 Identities=10% Similarity=0.229 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 160 LAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 160 lR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
+|+.--|..+.+...++..-|. |+++...+++.+..+-.+.-.+-+++..|.++....-....+-...|+.++.++
T Consensus 105 irR~~LeAQka~~eR~ia~~~~----ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 105 IRRAQLEAQKAQLERLIAESEA----RANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345555555555554443 333444455555555555555555555555544433333333344444554444
Q ss_pred H
Q 019869 240 I 240 (334)
Q Consensus 240 ~ 240 (334)
.
T Consensus 181 q 181 (192)
T PF11180_consen 181 Q 181 (192)
T ss_pred H
Confidence 3
No 173
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.86 E-value=81 Score=24.57 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 197 MNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 197 ~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
+.+..+|-.+.|.+|..|.+.+...-..+..++-.||.++...
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~ 45 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKEL 45 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666655443
No 174
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=47.61 E-value=1.8e+02 Score=26.38 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 019869 201 NRELIERIKQMAAEAQ 216 (334)
Q Consensus 201 naELeErl~ql~~E~q 216 (334)
+..+|++++.+..|+.
T Consensus 160 ~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 160 LNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 175
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=47.38 E-value=1.3e+02 Score=23.02 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=13.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhcC
Q 019869 220 YRAKYNESVVNLLKSNLQQAISQG 243 (334)
Q Consensus 220 ~~A~~nEa~a~~Lr~~LqQ~~~~~ 243 (334)
.........+..|+.+|..+....
T Consensus 25 ~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 25 DVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666667766666544
No 176
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=47.31 E-value=93 Score=35.80 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 019869 176 LSAIEKGLAKKLQEKDMEIENMNRK-NRELIERIKQMAAEAQNWH 219 (334)
Q Consensus 176 l~ave~~~~~rLReKe~Eie~~~kr-naELeErl~ql~~E~q~Wq 219 (334)
|...|..-+.+|++|-+|.+++.++ ...|||+++.++.-+++.|
T Consensus 380 L~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq 424 (1714)
T KOG0241|consen 380 LEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQ 424 (1714)
T ss_pred HhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445556667788888888887665 5678888888776665544
No 177
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=47.10 E-value=3.2e+02 Score=27.69 Aligned_cols=32 Identities=13% Similarity=0.428 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 019869 169 QRHMASFLSAIEKGLAKKLQEKDMEIENMNRK 200 (334)
Q Consensus 169 qrh~r~ll~ave~~~~~rLReKe~Eie~~~kr 200 (334)
+.+...+-..+..++..+|..+...++.+..+
T Consensus 311 ~q~L~~l~~rL~~a~~~~L~~~~~~L~~l~~r 342 (438)
T PRK00286 311 QQRLDRLQQRLQRALERRLRLAKQRLERLSQR 342 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666677777777777665544
No 178
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=46.31 E-value=6.7 Score=26.18 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=12.5
Q ss_pred CCCCCCCcccccceEE
Q 019869 315 VAVCPVCQFVKNASVL 330 (334)
Q Consensus 315 l~~CPvCr~~i~~~v~ 330 (334)
...||+|..+.....+
T Consensus 18 p~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 18 PEKCPICGAPKEKFEE 33 (34)
T ss_pred CCcCcCCCCchHHcEE
Confidence 4799999998776654
No 179
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=46.29 E-value=4.2e+02 Score=30.89 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHH
Q 019869 147 EEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKD---MEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 147 ~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe---~Eie~~~krnaELeErl~ql~~ 213 (334)
.+++.-+..+.+.+...+++.++.+. +-+..++..--..|..+. ..|..+.++...|++.++.+..
T Consensus 724 ~~~~~~~d~~i~~i~~~i~~~~~~~~-~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~ 792 (1201)
T PF12128_consen 724 QELEAELDEQIEQIKQEIAAAKQEAK-EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEE 792 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555544333333 233444444444444432 3555556666666666665554
No 180
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=45.99 E-value=1.7e+02 Score=25.35 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 019869 180 EKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAIS 241 (334)
Q Consensus 180 e~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~ 241 (334)
+..|+..||....|+......|.....++..+..|--+||....-. ..+-.++++++.
T Consensus 35 DDEI~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~QE~~~~l----~~lD~~V~~aY~ 92 (131)
T PF10198_consen 35 DDEISAELRRLQAELREQSAHNNARKKRLLKIAKEEMARQEYKRIL----DDLDKQVEQAYK 92 (131)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4456677788888888888888888888888888888888877654 446677777765
No 181
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=45.84 E-value=2e+02 Score=25.77 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=21.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 188 QEKDMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 188 ReKe~Eie~~~krnaELeErl~ql~~ 213 (334)
+.||+|..++..++.+-++++.+++.
T Consensus 101 kkKD~Ea~~L~~KLkeEq~kv~~ME~ 126 (152)
T PF11500_consen 101 KKKDAEAMRLAEKLKEEQEKVAEMER 126 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999998888888877663
No 182
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.78 E-value=6.4 Score=42.56 Aligned_cols=42 Identities=24% Similarity=0.601 Sum_probs=29.8
Q ss_pred cccccccccccccc----eEEecCCCcccchhhHhhC--CCCCCCccccc
Q 019869 283 HQMICRACKAKEAS----VLLMPCRHLCLCKDCDVLV--AVCPVCQFVKN 326 (334)
Q Consensus 283 ~~~~C~iC~~~~~~----vlllPC~HlclC~~C~~~l--~~CPvCr~~i~ 326 (334)
....|.||...... =+.+-|+|. +|+.|...+ ..|| |...-.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn~scp-~~~De~ 57 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYNASCP-TKRDED 57 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhhccCC-CCcccc
Confidence 45678888554433 355679999 899999986 8899 654433
No 183
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=45.74 E-value=76 Score=23.79 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=21.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAAEAQNW 218 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~E~q~W 218 (334)
+.++..+++.+.+++.++++..++|..|-+.+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556667777777777777777666666655
No 184
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=45.67 E-value=65 Score=27.93 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=37.8
Q ss_pred HHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 019869 137 NVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIEN 196 (334)
Q Consensus 137 ~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~ 196 (334)
++..-|..-..|+|++.+.+.+ +-..++....-|.-+|..++.++.|-++.|++
T Consensus 71 Eis~~L~~vieELdqi~~~~~~------~~d~K~kiL~dL~HLE~Vv~~KIaEIe~dlek 124 (125)
T PF11944_consen 71 EISPNLRYVIEELDQITGREQA------EVDLKQKILDDLRHLEKVVNSKIAEIERDLEK 124 (125)
T ss_pred hccHHHHHHHHHHHHHHcchhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555577778899998874432 23355666666778899888888887777765
No 185
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.65 E-value=12 Score=31.47 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=24.9
Q ss_pred CCCCCCccccccCCCcce------ecCcccchhhhhcCC
Q 019869 4 GNNGNPVVPVFLDENSFQ------YQTNASNQLQLFGNL 36 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 36 (334)
+-|||+++|+++++.||. |++.-.|-||-|=-+
T Consensus 60 ~~~GnplPPqifn~d~Y~Gdye~F~ea~E~ntl~eFL~l 98 (108)
T KOG4023|consen 60 PLNGNPLPPQIFNGDQYCGDYELFFEAVEQNTLQEFLGL 98 (108)
T ss_pred CCCCCCCCcccccCccccccHHHHHHHHHHHHHHHHHcc
Confidence 468999999999999996 245556777776443
No 186
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=45.18 E-value=2.6e+02 Score=26.04 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019869 189 EKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKS 234 (334)
Q Consensus 189 eKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~ 234 (334)
.-++|++.++--...|||.-++|.+.+.--..-...-.+.+..|+.
T Consensus 64 ~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqe 109 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQE 109 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665555555444333333333333333333
No 187
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.15 E-value=3.9e+02 Score=29.76 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=8.2
Q ss_pred HhHhhHHHHHHHH
Q 019869 142 LDRQKEEFDQYIK 154 (334)
Q Consensus 142 l~rq~~EiD~~ir 154 (334)
+..+..+++.+|.
T Consensus 511 ~~~~~~~~~~li~ 523 (782)
T PRK00409 511 IGEDKEKLNELIA 523 (782)
T ss_pred HhhhhhHHHHHHH
Confidence 3455567777774
No 188
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=45.11 E-value=4.4e+02 Score=28.66 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=52.0
Q ss_pred hhhhhHHHHHHhHhhHHH-HHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHH
Q 019869 132 LSLADNVRTELDRQKEEF-DQYIKVQEEYLAKGV----QDMKQRHMASFLSAIEKGL---AKKLQEKDMEIENMNRKNRE 203 (334)
Q Consensus 132 ~~l~~~l~~~l~rq~~Ei-D~~ir~q~erlR~~l----ee~rqrh~r~ll~ave~~~---~~rLReKe~Eie~~~krnaE 203 (334)
-.+++. -+|+.|-.|+ |.|+++.+++|=... +...++....=+.-++..+ ..+|..|+.|+.++..+..+
T Consensus 157 RAlsQN--~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq 234 (617)
T PF15070_consen 157 RALSQN--RELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQ 234 (617)
T ss_pred HHHHhH--HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345555 4789999888 889999999854333 3444444434444444322 24677889999999888777
Q ss_pred HHHHHHHHHH
Q 019869 204 LIERIKQMAA 213 (334)
Q Consensus 204 LeErl~ql~~ 213 (334)
+...+.+..+
T Consensus 235 ~~~~Lqqy~a 244 (617)
T PF15070_consen 235 YLGHLQQYVA 244 (617)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 189
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=45.00 E-value=5.9 Score=32.58 Aligned_cols=42 Identities=21% Similarity=0.520 Sum_probs=33.7
Q ss_pred ccccccccccccccccccceEEecCCCcccchhhHhhCCCCCCCccc
Q 019869 278 SISRNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFV 324 (334)
Q Consensus 278 ~~~~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l~~CPvCr~~ 324 (334)
...++....|..|..+.+-..+ |. +|..|+.....|+-|..+
T Consensus 49 YKpLt~p~kC~~C~qktVk~AY----h~-iC~~Ca~~~~vCaKC~k~ 90 (92)
T PF10217_consen 49 YKPLTQPKKCNKCQQKTVKHAY----HV-ICDPCAKELKVCAKCGKP 90 (92)
T ss_pred cccCCCCccccccccchHHHHH----HH-HHHHHHHhhccCcccCCC
Confidence 3446677899999988775553 55 899999999999999875
No 190
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.82 E-value=8.4 Score=34.59 Aligned_cols=25 Identities=24% Similarity=0.675 Sum_probs=21.4
Q ss_pred cchhhHhh-CCCCCCCcccccceEEE
Q 019869 307 LCKDCDVL-VAVCPVCQFVKNASVLV 331 (334)
Q Consensus 307 lC~~C~~~-l~~CPvCr~~i~~~v~v 331 (334)
+|..|... +..||.|..+|.+..+|
T Consensus 30 fC~kCG~~tI~~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 30 FCSKCGAKTITSCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHhhHHHHHHCcCCCCCCCCceec
Confidence 79999875 69999999999887665
No 191
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=44.76 E-value=8.4 Score=34.88 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=21.7
Q ss_pred ccccccccccccceEEecCCCcccchhhHhhCCCCCCCcccccceE
Q 019869 284 QMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASV 329 (334)
Q Consensus 284 ~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l~~CPvCr~~i~~~v 329 (334)
...|++| ||+ |.. ..-..||+|.+++....
T Consensus 134 ~~vC~vC------------Gy~--~~g--e~P~~CPiCga~k~~F~ 163 (166)
T COG1592 134 VWVCPVC------------GYT--HEG--EAPEVCPICGAPKEKFE 163 (166)
T ss_pred EEEcCCC------------CCc--ccC--CCCCcCCCCCChHHHhh
Confidence 5677776 675 455 56689999999876654
No 192
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=44.60 E-value=3e+02 Score=26.57 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=60.6
Q ss_pred HhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHH------HHHHHHHHH
Q 019869 142 LDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKK-LQEKDMEIENMNRKNRELI------ERIKQMAAE 214 (334)
Q Consensus 142 l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~r-LReKe~Eie~~~krnaELe------Erl~ql~~E 214 (334)
+.+-.--||.|.--.+++.-..|++.|+.|..++..+++...... +-++-+-+=...|.|..|+ |++-.+..|
T Consensus 112 ~k~~g~ai~~~adk~~~k~~~~~~~arq~~ik~i~d~id~~~sqq~~~~~~~~lfd~~keni~l~lE~~yre~~~~v~~E 191 (247)
T KOG3976|consen 112 IKKLGPAIADWADKLIEKILSQLEEARQAHIKAISDAIDTEKSQQALASKTEYLFDVSKENIALQLEATYREQLVRVAKE 191 (247)
T ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888889999999999999999888754432 2222223334455555443 455567778
Q ss_pred HHHHHHHHhhhHHHHH
Q 019869 215 AQNWHYRAKYNESVVN 230 (334)
Q Consensus 215 ~q~Wq~~A~~nEa~a~ 230 (334)
...|-+.-.+.|++..
T Consensus 192 ~K~~lDy~v~~e~~~r 207 (247)
T KOG3976|consen 192 VKRRLDYWVETEASKR 207 (247)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777776666666543
No 193
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=44.45 E-value=3.3e+02 Score=27.08 Aligned_cols=94 Identities=20% Similarity=0.291 Sum_probs=55.4
Q ss_pred HHHHHHHHHhHHHHHHH---HHHHHHHHHHHH----------HHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHH
Q 019869 147 EEFDQYIKVQEEYLAKG---VQDMKQRHMASF----------LSAIEKGLAKK---LQEKDMEIENMNRKNRELIERIKQ 210 (334)
Q Consensus 147 ~EiD~~ir~q~erlR~~---lee~rqrh~r~l----------l~ave~~~~~r---LReKe~Eie~~~krnaELeErl~q 210 (334)
.|=+.-+|.+..+|+.. .+++=+..+.-. ++.+....++| ...-.+||.++..+.++|+.+.++
T Consensus 173 EeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~ 252 (306)
T PF04849_consen 173 EEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQ 252 (306)
T ss_pred HHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777632 233333322211 22333344444 344458899999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019869 211 MAAEAQNWHYRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 211 l~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
+..|+...+..-......=..|.++|..+.
T Consensus 253 ~~~EnEeL~q~L~~ske~Q~~L~aEL~elq 282 (306)
T PF04849_consen 253 LAAENEELQQHLQASKESQRQLQAELQELQ 282 (306)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988766554443333344555555443
No 194
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=44.40 E-value=2.2e+02 Score=24.88 Aligned_cols=53 Identities=17% Similarity=0.359 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019869 170 RHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNE 226 (334)
Q Consensus 170 rh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nE 226 (334)
-.+.+-+..+| .+..++|.||..+.+++..|+..+.++...-..-+..+...+
T Consensus 17 e~~e~~~K~le----~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~ 69 (143)
T PF12718_consen 17 EELEAKVKQLE----QENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE 69 (143)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33444444455 467788999999999999999999999887776666555443
No 195
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=44.39 E-value=2.9e+02 Score=26.29 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhhHHHHHHHHHHHHHHHHHHHHH
Q 019869 145 QKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKK-------------LQEKDMEIENMNRKNRELIERIKQM 211 (334)
Q Consensus 145 q~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~r-------------LReKe~Eie~~~krnaELeErl~ql 211 (334)
-..-|..+..-|.++.-..+.+--.-..| ++.+|-.....| |..|.+-++++...+. .+++.++
T Consensus 88 v~~~i~~~~~~qa~qd~~~f~e~l~eYiR-li~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~--~dK~~~a 164 (234)
T cd07665 88 VEEKIEQLHQEQANNDFFLLAELLADYIR-LLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANK--PDKLQQA 164 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHH
Confidence 33445555555555555555554433332 345555544444 2223333333322221 4688888
Q ss_pred HHHHHHHHHHHhhhHH
Q 019869 212 AAEAQNWHYRAKYNES 227 (334)
Q Consensus 212 ~~E~q~Wq~~A~~nEa 227 (334)
..|.+.|+.++...+.
T Consensus 165 ~~Ev~e~e~k~~~a~~ 180 (234)
T cd07665 165 KDEIAEWESRVTQYER 180 (234)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887765544
No 196
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.24 E-value=9.4 Score=33.37 Aligned_cols=25 Identities=24% Similarity=0.757 Sum_probs=19.6
Q ss_pred cchhhHh-hCCCCCCCcccccceEEE
Q 019869 307 LCKDCDV-LVAVCPVCQFVKNASVLV 331 (334)
Q Consensus 307 lC~~C~~-~l~~CPvCr~~i~~~v~v 331 (334)
+|..|.. .+..||+|.++|.+...|
T Consensus 30 fcskcgeati~qcp~csasirgd~~v 55 (160)
T COG4306 30 FCSKCGEATITQCPICSASIRGDYYV 55 (160)
T ss_pred HHhhhchHHHhcCCccCCccccccee
Confidence 6777765 468999999999887654
No 197
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.17 E-value=2.2e+02 Score=28.81 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=20.6
Q ss_pred ccee-cCcccchhhhhcCCCCCCCCCCcee
Q 019869 19 SFQY-QTNASNQLQLFGNLPAGCSIDPVNY 47 (334)
Q Consensus 19 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (334)
.|.| |.....-|++-|++|+++.|.++|.
T Consensus 41 tf~~~Dg~s~~ll~~~GTIp~~~~G~tYnI 70 (365)
T KOG2391|consen 41 TFTHNDGRSRLLLQLDGTIPVPYQGVTYNI 70 (365)
T ss_pred eEEecCCCccchhhccCcccccccCCcccc
Confidence 3444 4444578999999999988866653
No 198
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=44.06 E-value=1.5e+02 Score=22.82 Aligned_cols=36 Identities=8% Similarity=0.226 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 146 KEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEK 181 (334)
Q Consensus 146 ~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~ 181 (334)
...+..-++.+.+.....|+...=.+|+.|+.+.+.
T Consensus 24 i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~ 59 (87)
T PF08700_consen 24 IRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDE 59 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334445556667777777788888999999998884
No 199
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=43.70 E-value=1.2e+02 Score=29.12 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019869 202 RELIERIKQMAAEAQNWHYRAKYNESVVNLLKS 234 (334)
Q Consensus 202 aELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~ 234 (334)
.|...|+..|+.|+.+.+......+.....|+.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666667776665555554333333333
No 200
>PLN02189 cellulose synthase
Probab=43.67 E-value=15 Score=41.75 Aligned_cols=44 Identities=20% Similarity=0.629 Sum_probs=33.5
Q ss_pred ccccccccccc----ccceEEecCCC--cccchhhHhh-----CCCCCCCccccc
Q 019869 283 HQMICRACKAK----EASVLLMPCRH--LCLCKDCDVL-----VAVCPVCQFVKN 326 (334)
Q Consensus 283 ~~~~C~iC~~~----~~~vlllPC~H--lclC~~C~~~-----l~~CPvCr~~i~ 326 (334)
....|.||.+. ...-+|+.|.- +.+|..|..- -+.||-|++...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34589999997 55568888852 2489999863 489999998764
No 201
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=43.24 E-value=3.3e+02 Score=26.70 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=27.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
|.+.-.+|......+.+++..+.++..|-+.+.......++....+..++.++.
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444445555555555555555555555555555554443
No 202
>PHA03415 putative internal virion protein; Provisional
Probab=42.92 E-value=82 Score=35.30 Aligned_cols=86 Identities=21% Similarity=0.261 Sum_probs=57.6
Q ss_pred hHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--H
Q 019869 136 DNVRTELDRQKEEFDQYIKVQEEYLAKGVQDM-----------KQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKN--R 202 (334)
Q Consensus 136 ~~l~~~l~rq~~EiD~~ir~q~erlR~~lee~-----------rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krn--a 202 (334)
|..++-+.+-..|.|-+++.-.|-|-+.|.++ |.+.++..=.++|+.+.+-|-..++|-.+..+.. -
T Consensus 299 ~naas~~r~~~n~~~g~~~~~~~~~~~~~~~~~g~g~~~~~~~~s~r~~~ardale~kvt~eL~rrd~~ws~~G~v~~dp 378 (1019)
T PHA03415 299 DNAASFFRMNSNEADGLFAAWDDGLEKEIAKREGFGTAQIKLDASGRYADAKDALERKVADELARRDAEWSRFGAVMADP 378 (1019)
T ss_pred ccHHHHHHHhhhhhhhHHHHHHhHHHHHHHHhcCccHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhHHHHhcCCccCCC
Confidence 55677778889999999999999999988884 3445667777888888888855555544433332 1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019869 203 ELIERIKQMAAEAQNWHYR 221 (334)
Q Consensus 203 ELeErl~ql~~E~q~Wq~~ 221 (334)
.+--.+++|..|.+.|...
T Consensus 379 ~~dp~IarLAd~~~~~he~ 397 (1019)
T PHA03415 379 NLDPDIARLADESDAFHGQ 397 (1019)
T ss_pred CCChHHHHHHHHHHHHHHH
Confidence 2333444555555555444
No 203
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=42.62 E-value=3.9e+02 Score=27.37 Aligned_cols=40 Identities=18% Similarity=0.389 Sum_probs=29.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 019869 181 KGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEA-QNWHY 220 (334)
Q Consensus 181 ~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~-q~Wq~ 220 (334)
.....++.+.+.++..+.++..+|++++..+.... ..|.-
T Consensus 95 ~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlL 135 (390)
T PRK10920 95 KQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWLL 135 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHH
Confidence 34455677778888888899999999988877544 56653
No 204
>PHA02562 46 endonuclease subunit; Provisional
Probab=42.55 E-value=4e+02 Score=27.47 Aligned_cols=34 Identities=12% Similarity=0.301 Sum_probs=16.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 185 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNW 218 (334)
Q Consensus 185 ~rLReKe~Eie~~~krnaELeErl~ql~~E~q~W 218 (334)
..+.+.+++++.+.++...|+..+.++..+-..+
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555444444333
No 205
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.41 E-value=11 Score=38.49 Aligned_cols=41 Identities=24% Similarity=0.583 Sum_probs=28.5
Q ss_pred cccccccccc----cccceEEecCCCcccchhhHhhC-------CCCCCCcccc
Q 019869 283 HQMICRACKA----KEASVLLMPCRHLCLCKDCDVLV-------AVCPVCQFVK 325 (334)
Q Consensus 283 ~~~~C~iC~~----~~~~vlllPC~HlclC~~C~~~l-------~~CPvCr~~i 325 (334)
..-.|+|=++ ...-+ -|+|||. +|++=..++ -+||.|....
T Consensus 333 SvF~CPVlKeqtsdeNPPm-~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPM-MLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ceeecccchhhccCCCCCe-eeeccce-ecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 4568888444 33333 3589999 888877664 4899997665
No 206
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.94 E-value=1e+02 Score=33.37 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 019869 225 NESVVNLLKSNLQQAI 240 (334)
Q Consensus 225 nEa~a~~Lr~~LqQ~~ 240 (334)
.+..++.|+.+|++-.
T Consensus 479 ~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 479 RDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345556666555443
No 207
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=41.22 E-value=83 Score=33.63 Aligned_cols=86 Identities=12% Similarity=0.127 Sum_probs=47.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 019869 151 QYIKVQEEYLAKGVQDMKQRHM---ASFLSAIEKGLAKKLQEKDMEIE-NMNRKNRELIERIKQMAAEAQNWHYRAK--- 223 (334)
Q Consensus 151 ~~ir~q~erlR~~lee~rqrh~---r~ll~ave~~~~~rLReKe~Eie-~~~krnaELeErl~ql~~E~q~Wq~~A~--- 223 (334)
+|+-++...-|..-.......| |.|..-||. |.+|+|+.|++|. ++-+-.-|-+ ..|.+.|+...+
T Consensus 493 qY~aI~S~eqr~~Yk~dF~~eY~EYreLharve~-vs~rF~~Lea~L~srls~gS~ey~------~i~~qI~qEYeki~~ 565 (604)
T KOG4796|consen 493 QYGAISSLEQRQRYKKDFEAEYDEYRELHARVET-VSRRFRQLEAQLKSRLSPGSPEYK------QIEKQILQEYEKIRK 565 (604)
T ss_pred hccccccHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCCCCcHH------HHHHHHHHHHHHhhc
Confidence 4555666555555554444443 556666664 5666777666666 3333333222 234555555443
Q ss_pred -----hhHHHHHHHHHHHHHHHhcC
Q 019869 224 -----YNESVVNLLKSNLQQAISQG 243 (334)
Q Consensus 224 -----~nEa~a~~Lr~~LqQ~~~~~ 243 (334)
+....-..|++.|.+++.+.
T Consensus 566 dp~y~eeK~RceYLhsKLaHIK~lI 590 (604)
T KOG4796|consen 566 DPNYMEEKQRCEYLHSKLAHIKTLI 590 (604)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 22335678999998887654
No 208
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=41.16 E-value=4.9e+02 Score=28.03 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 170 RHMASFLSAIEKGLA---KKLQEKDMEIENMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 170 rh~r~ll~ave~~~~---~rLReKe~Eie~~~krnaELeErl~ql~~E~q 216 (334)
+++...++.+|.... ++.+..++|+.++.+.|.-|.+.+..+..+-.
T Consensus 144 ~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 144 DDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344555666665443 45677789999999998888888877776443
No 209
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=40.98 E-value=60 Score=26.57 Aligned_cols=41 Identities=32% Similarity=0.246 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 176 LSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 176 l~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q 216 (334)
+..-+...+.....|..+++++..+..+++....+|..+-+
T Consensus 64 l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~ 104 (109)
T PF03980_consen 64 LTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQ 104 (109)
T ss_pred CChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566667777777777777777777766665544
No 210
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=40.82 E-value=3.1e+02 Score=25.61 Aligned_cols=68 Identities=19% Similarity=0.373 Sum_probs=33.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--------------HH
Q 019869 150 DQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAA--------------EA 215 (334)
Q Consensus 150 D~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~--------------E~ 215 (334)
-++=+.+.|+|...++.-+ |+..|. +||...=.||..+..-|..|.+..+.|.. =+
T Consensus 23 ~rLR~~E~ek~~~m~~~g~------lm~evN----rrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrkla 92 (195)
T PF10226_consen 23 RRLRRAEAEKMSLMVEHGR------LMKEVN----RRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLA 92 (195)
T ss_pred HHHHHHHHHHHHHHHHHHh------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHh
Confidence 3444667777777666433 333333 23333334444444444444444333333 24
Q ss_pred HHHHHHHhhhHH
Q 019869 216 QNWHYRAKYNES 227 (334)
Q Consensus 216 q~Wq~~A~~nEa 227 (334)
..||.+.+|.-.
T Consensus 93 rEWQrFGryta~ 104 (195)
T PF10226_consen 93 REWQRFGRYTAS 104 (195)
T ss_pred HHHHHhhhHHHH
Confidence 568887776543
No 211
>PRK13677 hypothetical protein; Provisional
Probab=40.33 E-value=84 Score=27.16 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=37.0
Q ss_pred HHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 019869 138 VRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENM 197 (334)
Q Consensus 138 l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~ 197 (334)
+...|-.-..|+|++.+.+.+ +...++....-|.-+|..++.++.|-|+.++++
T Consensus 72 i~~~l~~vidELd~i~~~~~~------e~d~K~kiL~dLrHLE~Vv~~KIaEIe~dLekL 125 (125)
T PRK13677 72 ISPNLRYVIDELDQICQRDRE------EVDLKRKILDDLRHLESVVANKISEIEADLEKL 125 (125)
T ss_pred ccHHHHHHHHHHHHHhcchhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444566667788888875433 334555566667778998998888888777753
No 212
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.30 E-value=85 Score=32.98 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 192 MEIENMNRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~~E~q~ 217 (334)
.|++.+.++..+++++++.++.|.+.
T Consensus 90 qElq~~saq~~dle~KIkeLEaE~~~ 115 (475)
T PRK13729 90 RELDVLNKQRGDDQRRIEKLGQDNAA 115 (475)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 45555556666677777666666554
No 213
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=40.27 E-value=5.2e+02 Score=28.12 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=10.4
Q ss_pred hHHHHHHHHHhHHHHH
Q 019869 146 KEEFDQYIKVQEEYLA 161 (334)
Q Consensus 146 ~~EiD~~ir~q~erlR 161 (334)
...++.+++.+.+||+
T Consensus 110 ne~Ls~L~~EqEerL~ 125 (617)
T PF15070_consen 110 NEQLSRLNQEQEERLA 125 (617)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666677777765
No 214
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=40.12 E-value=2.2e+02 Score=26.09 Aligned_cols=18 Identities=22% Similarity=0.505 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019869 197 MNRKNRELIERIKQMAAE 214 (334)
Q Consensus 197 ~~krnaELeErl~ql~~E 214 (334)
+.++..++++++.+|..|
T Consensus 151 a~~~~~e~~~~l~~l~~e 168 (176)
T PF12999_consen 151 AKKKREELEKKLEELEKE 168 (176)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444443
No 215
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=39.78 E-value=2.7e+02 Score=24.64 Aligned_cols=21 Identities=14% Similarity=0.441 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019869 192 MEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~ 212 (334)
+++..+.....++.+.++.+.
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 216
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=39.72 E-value=3.7e+02 Score=26.49 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019869 200 KNRELIERIKQMAAEAQN 217 (334)
Q Consensus 200 rnaELeErl~ql~~E~q~ 217 (334)
...+|||++++++.|-..
T Consensus 117 l~seleeKkrkieeeR~s 134 (291)
T KOG4466|consen 117 LISELEEKKRKIEEERLS 134 (291)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 378899999999877653
No 217
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=39.66 E-value=2.6e+02 Score=24.52 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=30.6
Q ss_pred HHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Q 019869 137 NVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHM--ASFLSAIEKGLAKKLQE 189 (334)
Q Consensus 137 ~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~--r~ll~ave~~~~~rLRe 189 (334)
.++.-|.++..++|.=| +.|+..|.+.-+.+. ..++..+......+.+.
T Consensus 22 ~i~~~L~k~~~~v~~~i----~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~ 72 (146)
T PF08702_consen 22 GIQDFLDKYERDVDKDI----QELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQ 72 (146)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccchHHHH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccc
Confidence 47777888888887544 556666666555554 44556666555555544
No 218
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=39.33 E-value=1e+02 Score=35.66 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019869 196 NMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 196 ~~~krnaELeErl~ql~~E~q 216 (334)
.+.+++++|++.++++.++..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~ 208 (1123)
T PRK11448 188 ELEEKQQELEAQLEQLQEKAA 208 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666655544
No 219
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=39.27 E-value=3.2e+02 Score=25.42 Aligned_cols=11 Identities=0% Similarity=0.335 Sum_probs=5.2
Q ss_pred HhhHHHHHHHH
Q 019869 144 RQKEEFDQYIK 154 (334)
Q Consensus 144 rq~~EiD~~ir 154 (334)
.-..+|+..|.
T Consensus 38 ~l~~~i~~~l~ 48 (302)
T PF10186_consen 38 ELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHH
Confidence 33445555554
No 220
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.11 E-value=6.3e+02 Score=28.73 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 193 EIENMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 193 Eie~~~krnaELeErl~ql~~E~q 216 (334)
||++.+..-.||| +.|+++.|-.
T Consensus 394 eie~rEaar~ElE-kqRqlewEra 416 (1118)
T KOG1029|consen 394 EIERREAAREELE-KQRQLEWERA 416 (1118)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3444444445553 5667776653
No 221
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=38.73 E-value=2.6e+02 Score=24.23 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 160 LAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 160 lR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
|-..+++ .-++....|+.-+.+..+|+|+-|.+++++.....+-+.+..+... .-.. ..+-.......+..|+++
T Consensus 32 Lc~R~Q~-HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae---~L~k-v~els~~L~~~~~lL~~~ 106 (131)
T PF10158_consen 32 LCSRYQE-HLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAE---QLEK-VNELSQQLSRCQSLLNQT 106 (131)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHH
Confidence 3333444 2345566778888899999999999999988876655555544443 2222 223333344455555555
Q ss_pred Hh
Q 019869 240 IS 241 (334)
Q Consensus 240 ~~ 241 (334)
+.
T Consensus 107 v~ 108 (131)
T PF10158_consen 107 VP 108 (131)
T ss_pred HH
Confidence 43
No 222
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.57 E-value=1.7e+02 Score=30.73 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=4.3
Q ss_pred HhHHHHHHHHH
Q 019869 155 VQEEYLAKGVQ 165 (334)
Q Consensus 155 ~q~erlR~~le 165 (334)
.+...+|..++
T Consensus 66 a~~k~~r~~~~ 76 (472)
T TIGR03752 66 AEVKELRKRLA 76 (472)
T ss_pred HHHHHHHHHHH
Confidence 33334443333
No 223
>PRK14140 heat shock protein GrpE; Provisional
Probab=38.35 E-value=1e+02 Score=28.43 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=8.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHH
Q 019869 146 KEEFDQYIKVQEEYLAKGVQD 166 (334)
Q Consensus 146 ~~EiD~~ir~q~erlR~~lee 166 (334)
..+|+. +....+.++..+.+
T Consensus 36 ~~~~~~-l~~~i~~l~~ei~e 55 (191)
T PRK14140 36 AELLDE-EQAKIAELEAKLDE 55 (191)
T ss_pred hhHHHH-HHHHHHHHHHHHHH
Confidence 345555 33444444444443
No 224
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=38.26 E-value=1.5e+02 Score=21.28 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019869 191 DMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 191 e~Eie~~~krnaELeErl~ql~~ 213 (334)
+.++..+...|..|+..+..|..
T Consensus 31 e~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 31 EQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444445555555555544443
No 225
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=38.08 E-value=4e+02 Score=26.10 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019869 202 RELIERIKQMAAEAQNWHYRA 222 (334)
Q Consensus 202 aELeErl~ql~~E~q~Wq~~A 222 (334)
.+++|.+++.+.|.+.|+.+.
T Consensus 210 e~~~EeL~~~Eke~~e~~~~i 230 (269)
T PF05278_consen 210 EELEEELKQKEKEVKEIKERI 230 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555554443
No 226
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=38.07 E-value=2.1e+02 Score=22.87 Aligned_cols=49 Identities=12% Similarity=0.291 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHH
Q 019869 192 MEIENMNRKNRELIERIKQMAAEAQNWH----YRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~~E~q~Wq----~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
..+..+.++..++..+++.|..+...-. ...+........|...+..++
T Consensus 50 ~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~L~~~f~~~m 102 (117)
T smart00503 50 RLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEKLRKKFKEVM 102 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHHHHHHHHHHH
Confidence 3445555666667777777766544211 112233344555666665554
No 227
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=38.05 E-value=3.7e+02 Score=25.69 Aligned_cols=10 Identities=20% Similarity=0.052 Sum_probs=5.2
Q ss_pred ceEEecCCCc
Q 019869 296 SVLLMPCRHL 305 (334)
Q Consensus 296 ~vlllPC~Hl 305 (334)
+|.|.|=||.
T Consensus 240 ~v~Le~~g~~ 249 (272)
T KOG4552|consen 240 NVKLEITGGI 249 (272)
T ss_pred CeeeecCCCc
Confidence 3555555554
No 228
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=37.93 E-value=5.4e+02 Score=28.86 Aligned_cols=35 Identities=31% Similarity=0.266 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019869 203 ELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQ 237 (334)
Q Consensus 203 ELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~Lq 237 (334)
+|.+.-.++.+|....+.+-.+-|-...+|+.+|.
T Consensus 124 ~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~ 158 (769)
T PF05911_consen 124 ELSEEKSQAEAEIEDLMARLESTEKENSSLKYELH 158 (769)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555566666654
No 229
>PHA02562 46 endonuclease subunit; Provisional
Probab=37.78 E-value=4.8e+02 Score=26.94 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=37.4
Q ss_pred HHHHHHhHhhHHHHHHHHHhHHHHHH--HHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019869 137 NVRTELDRQKEEFDQYIKVQEEYLAK--GVQDMKQ---RHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQM 211 (334)
Q Consensus 137 ~l~~~l~rq~~EiD~~ir~q~erlR~--~lee~rq---rh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql 211 (334)
+....|+.+..+++.-+....+..+. .+.+... ......-..++. ..++....+.+|+++..+..++++.++++
T Consensus 306 d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~-~~~~~~~l~~ei~~l~~~~~~~~~~l~~l 384 (562)
T PHA02562 306 DKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLIT-LVDKAKKVKAAIEELQAEFVDNAEELAKL 384 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhchHHHHHHH
Confidence 35666777777777777633333221 1111111 111111122222 22344556667777766666666666665
Q ss_pred HHH
Q 019869 212 AAE 214 (334)
Q Consensus 212 ~~E 214 (334)
..+
T Consensus 385 ~~~ 387 (562)
T PHA02562 385 QDE 387 (562)
T ss_pred HHH
Confidence 553
No 230
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.45 E-value=27 Score=33.90 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=31.0
Q ss_pred cccccccccc----cccceEEecCCCcccchhhHhh--CCCCCCCcccccceEE
Q 019869 283 HQMICRACKA----KEASVLLMPCRHLCLCKDCDVL--VAVCPVCQFVKNASVL 330 (334)
Q Consensus 283 ~~~~C~iC~~----~~~~vlllPC~HlclC~~C~~~--l~~CPvCr~~i~~~v~ 330 (334)
....|+|=+. ...-++|.+|||. +-..-... ...|++|.++....-.
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV-~SerAlKeikas~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCV-FSERALKEIKASVCHVCGAAYQEDDV 162 (293)
T ss_pred ceeecccccceecceEEEEEEecccee-ccHHHHHHhhhccccccCCcccccCe
Confidence 4567777553 4556789999998 33322222 4899999999865433
No 231
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=37.31 E-value=7.2e+02 Score=28.87 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=18.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 185 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 185 ~rLReKe~Eie~~~krnaELeErl~ql~~E~q~ 217 (334)
.++.+.+.+|+.+..+..++++.+..+..+...
T Consensus 260 ~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~ 292 (1163)
T COG1196 260 EELEEAEKEIEELKSELEELREELEELQEELLE 292 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666655444333
No 232
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.28 E-value=6.1e+02 Score=28.07 Aligned_cols=50 Identities=14% Similarity=0.278 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 193 EIENMNRKNRELIERIKQMAA-----------EAQNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 193 Eie~~~krnaELeErl~ql~~-----------E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
.++++..+-..|..|++.+.. .-+.|..--+.-......|+..|+++...
T Consensus 601 R~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 601 RYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKK 661 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555556666655433 22455554444444556666777766543
No 233
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=37.24 E-value=7.3e+02 Score=28.93 Aligned_cols=56 Identities=20% Similarity=0.353 Sum_probs=37.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHH
Q 019869 185 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNES-------VVNLLKSNLQQAI 240 (334)
Q Consensus 185 ~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa-------~a~~Lr~~LqQ~~ 240 (334)
..+-+-+.+++.+.++...|++.+.+|..|-+..+..++.-+. ....|+..+++..
T Consensus 394 ~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 394 SELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777788888888888888888888877776654443 3445555554443
No 234
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=37.04 E-value=72 Score=24.09 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019869 197 MNRKNRELIERIKQMAAEAQNWHYRAK 223 (334)
Q Consensus 197 ~~krnaELeErl~ql~~E~q~Wq~~A~ 223 (334)
++.|.+.||.|+...+.+.+.-+..++
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666555444433
No 235
>PRK04863 mukB cell division protein MukB; Provisional
Probab=36.79 E-value=8.4e+02 Score=29.51 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=24.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 019869 188 QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQ 238 (334)
Q Consensus 188 ReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ 238 (334)
.....+++.+..+..+.++.+..+..+...+.......+..+..|+.++..
T Consensus 351 ~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLae 401 (1486)
T PRK04863 351 ERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLAD 401 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555555445555555454555555555554443
No 236
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=36.22 E-value=3.5e+02 Score=24.88 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=25.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
++++|.+|..+.++..+|++....+..+.. .....+..|++..+.+
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke-------~~~~ei~~lks~~~~l 171 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKE-------AKDKEISRLKSEAEAL 171 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 455666777777777766666555554433 2334444555554444
No 237
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=35.91 E-value=3.9e+02 Score=28.06 Aligned_cols=30 Identities=7% Similarity=0.066 Sum_probs=22.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 152 YIKVQEEYLAKGVQDMKQRHMASFLSAIEK 181 (334)
Q Consensus 152 ~ir~q~erlR~~lee~rqrh~r~ll~ave~ 181 (334)
+++.+.||+|..+..+-+.|...+....++
T Consensus 257 ~l~~EveRlrt~l~~Aqk~~~ek~~qy~~E 286 (552)
T KOG2129|consen 257 KLQAEVERLRTYLSRAQKSYQEKLMQYRAE 286 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668888899988888887777666555444
No 238
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=35.84 E-value=7.6e+02 Score=28.70 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=13.8
Q ss_pred hHHHHHHhHhhHHHHHHHHHhHH
Q 019869 136 DNVRTELDRQKEEFDQYIKVQEE 158 (334)
Q Consensus 136 ~~l~~~l~rq~~EiD~~ir~q~e 158 (334)
+|+..+|.+|+.++-++..-|.|
T Consensus 879 ed~~~~l~~qQe~~a~l~~sQ~e 901 (1283)
T KOG1916|consen 879 EDLLPQLLAQQETMAQLMASQKE 901 (1283)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHH
Confidence 35556666666666666655543
No 239
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=35.71 E-value=3e+02 Score=26.38 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=53.7
Q ss_pred hhhHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 134 LADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 134 l~~~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~ 213 (334)
.-.++...|++-..|+|+=|+..-+||...-++.- ...+. ++.++|..+..+..+|-+.+.+|..
T Consensus 80 YE~e~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~--------~~~~~-------~~~~~i~~l~~~I~~ll~~aE~LGe 144 (254)
T PF03194_consen 80 YEREFLRYLQRLIRDCDRRIERAKERLEQTQEEQA--------KEADE-------EKAEKIDELDEKIGELLKEAEELGE 144 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc--------cchhh-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999888888864433321 11111 1244555555555556666667766
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 019869 214 EAQNWHYRAKYNESVVNLLKSNLQQAIS 241 (334)
Q Consensus 214 E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~ 241 (334)
|...=... ..-..|..|+...+++..
T Consensus 145 eG~VdeA~--~~~~~~e~Lk~ek~~le~ 170 (254)
T PF03194_consen 145 EGDVDEAQ--KLMEEVEKLKEEKEELEK 170 (254)
T ss_pred CCCHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 65543222 223344556665555543
No 240
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=35.53 E-value=4.5e+02 Score=26.03 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 157 EEYLAKGVQDMKQRHMASFLSAIE 180 (334)
Q Consensus 157 ~erlR~~lee~rqrh~r~ll~ave 180 (334)
++.||..|..+|.-|.-.=--.||
T Consensus 91 I~eLksQL~RMrEDWIEEECHRVE 114 (305)
T PF15290_consen 91 IDELKSQLARMREDWIEEECHRVE 114 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443334444
No 241
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=35.02 E-value=2e+02 Score=21.80 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 189 EKDMEIENMNRKNRELIERIKQMAAEAQNW 218 (334)
Q Consensus 189 eKe~Eie~~~krnaELeErl~ql~~E~q~W 218 (334)
++...|..+.+...|.++-+.++..|.+.-
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566677777777788888888888887643
No 242
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=34.85 E-value=2.2e+02 Score=26.04 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019869 196 NMNRKNRELIERIKQMAAE 214 (334)
Q Consensus 196 ~~~krnaELeErl~ql~~E 214 (334)
.+.++..+|++.+....+|
T Consensus 157 e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 157 ELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4455555666666555543
No 243
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=34.84 E-value=2e+02 Score=21.61 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019869 191 DMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 191 e~Eie~~~krnaELeErl~ql~~ 213 (334)
++|++++.++...++..+.++..
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888887777777776664
No 244
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.67 E-value=2.1e+02 Score=30.20 Aligned_cols=19 Identities=11% Similarity=0.002 Sum_probs=8.7
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q 019869 219 HYRAKYNESVVNLLKSNLQ 237 (334)
Q Consensus 219 q~~A~~nEa~a~~Lr~~Lq 237 (334)
+.+.++.|+....|+.+++
T Consensus 103 e~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444544443
No 245
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=34.52 E-value=3.5e+02 Score=29.11 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=6.4
Q ss_pred hhhhhcCCCCC
Q 019869 29 QLQLFGNLPAG 39 (334)
Q Consensus 29 ~~~~~~~~~~~ 39 (334)
.+=|||..+.|
T Consensus 49 ~~~LyG~~~~~ 59 (650)
T TIGR03185 49 QLALYGKRALC 59 (650)
T ss_pred HHHhcCccccc
Confidence 45567766543
No 246
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=34.51 E-value=2.4e+02 Score=22.44 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=14.1
Q ss_pred HHHHhHhhHHHHHHHHHhHHHHHHHHHH
Q 019869 139 RTELDRQKEEFDQYIKVQEEYLAKGVQD 166 (334)
Q Consensus 139 ~~~l~rq~~EiD~~ir~q~erlR~~lee 166 (334)
...+..+...+-.-|+...++|+..|++
T Consensus 30 ~~~l~~~~~~~~~~I~~~f~~l~~~L~~ 57 (127)
T smart00502 30 IQEVEENAADVEAQIKAAFDELRNALNK 57 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555544
No 247
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=34.44 E-value=4.6e+02 Score=25.78 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=42.8
Q ss_pred HhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 144 RQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWH 219 (334)
Q Consensus 144 rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq 219 (334)
+-+.++..-++.+..+||-.|.|- |--.+. +| .+.|.++..+..+|.+|+.+..+|.+|....+
T Consensus 16 ~ywk~l~~~ykq~f~~~reEl~EF-QegSrE----~E-------aelesqL~q~etrnrdl~t~nqrl~~E~e~~K 79 (333)
T KOG1853|consen 16 QYWKLLHHEYKQHFLQMREELNEF-QEGSRE----IE-------AELESQLDQLETRNRDLETRNQRLTTEQERNK 79 (333)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHH-hhhhHH----HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888888666542 222222 22 34567888888888889988888888765443
No 248
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.19 E-value=4.4e+02 Score=25.46 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019869 194 IENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 194 ie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
++.+.-...+++||+++++.|+.-....-+.....+..|+..++++-
T Consensus 158 leele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 158 LEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 33344445566677777777777666666666666777777776654
No 249
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=34.14 E-value=1.1e+02 Score=23.53 Aligned_cols=35 Identities=9% Similarity=0.187 Sum_probs=27.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHY 220 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~ 220 (334)
..|....+++++.++..++++...+|..|-..|..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35677778888888888888888888888776654
No 250
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=34.11 E-value=5.8e+02 Score=26.84 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019869 199 RKNRELIERIKQMAAEAQNWHYRAKYN 225 (334)
Q Consensus 199 krnaELeErl~ql~~E~q~Wq~~A~~n 225 (334)
.+..+|..+++.|+.=...|......+
T Consensus 378 ~~l~~~~~~~~~le~~~~~~~~~~~~~ 404 (582)
T PF09731_consen 378 AKLAELNSRLKALEEALDARSEAEDEN 404 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555555544444
No 251
>PRK00295 hypothetical protein; Provisional
Probab=33.81 E-value=2.2e+02 Score=21.82 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 019869 194 IENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAIS 241 (334)
Q Consensus 194 ie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~ 241 (334)
|..+.-+.+-.++-+..|....- .....+..|+.+|..+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~-------~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLV-------EQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 44455555555555555543332 233334445555555543
No 252
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.74 E-value=5.9e+02 Score=26.80 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=14.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 188 QEKDMEIENMNRKNRELIERIKQMAAEA 215 (334)
Q Consensus 188 ReKe~Eie~~~krnaELeErl~ql~~E~ 215 (334)
|+|..|+++..-+...|++....+..+.
T Consensus 293 Reasle~Enlqmr~qqleeentelRs~~ 320 (502)
T KOG0982|consen 293 REASLEKENLQMRDQQLEEENTELRSLI 320 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666555554444444444433
No 253
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.73 E-value=1e+02 Score=23.07 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=17.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQM 211 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql 211 (334)
+.+.+.+++++..++.+|++.++.+
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455667777777777777777777
No 254
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=33.45 E-value=24 Score=29.40 Aligned_cols=44 Identities=25% Similarity=0.525 Sum_probs=30.0
Q ss_pred cccccccccccceEEecCCCc------ccchhhHhhC--------CCCCCCcccccce
Q 019869 285 MICRACKAKEASVLLMPCRHL------CLCKDCDVLV--------AVCPVCQFVKNAS 328 (334)
Q Consensus 285 ~~C~iC~~~~~~vlllPC~Hl------clC~~C~~~l--------~~CPvCr~~i~~~ 328 (334)
-.|--|.+.-...-|.|=+|- .+|..|-..+ ..||.|+.+++-.
T Consensus 36 YaCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp~ 93 (105)
T COG4357 36 YACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQSPFNPG 93 (105)
T ss_pred hhHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcCCCCCcc
Confidence 355666666666666666543 4677886643 6899999999754
No 255
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=33.35 E-value=7.9e+02 Score=28.16 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019869 191 DMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQ 237 (334)
Q Consensus 191 e~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~Lq 237 (334)
++|+.++....+|++|++.-+..---.....-+.+|++-+.|...++
T Consensus 378 e~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~e 424 (1265)
T KOG0976|consen 378 EEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALE 424 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHH
Confidence 45555555556666666554443322233333455555444444333
No 256
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=33.29 E-value=5.3e+02 Score=26.34 Aligned_cols=61 Identities=20% Similarity=0.437 Sum_probs=27.7
Q ss_pred HHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 149 FDQYIKVQEEY--LAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAE 214 (334)
Q Consensus 149 iD~~ir~q~er--lR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E 214 (334)
||.++.+..++ +...+++.|.. -..+...+.+..+.++.+.+.+..+..+|.++++.++.+
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~e-----rN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 91 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAK-----RNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAA 91 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 67777666543 22223332221 223333333333333222555555666666666655543
No 257
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.28 E-value=3e+02 Score=23.21 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 019869 198 NRKNRELIERIKQM 211 (334)
Q Consensus 198 ~krnaELeErl~ql 211 (334)
+.++..|+.|+..|
T Consensus 72 R~kl~~Leari~~L 85 (103)
T COG2960 72 REKLAALEARIEEL 85 (103)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 258
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=33.00 E-value=7.4e+02 Score=29.46 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=28.5
Q ss_pred hhHHHHHHhHhhHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 019869 135 ADNVRTELDRQKEEFDQYIKVQEEYLAKGVQ--DMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERI 208 (334)
Q Consensus 135 ~~~l~~~l~rq~~EiD~~ir~q~erlR~~le--e~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl 208 (334)
++.....|......+|++ +...+.+...++ +....+++.....+....+..++.+..+++.+.++..+++..+
T Consensus 218 ~~~~i~~l~e~~~~~~~~-~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1353)
T TIGR02680 218 DDDELTDVADALEQLDEY-RDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDEL 292 (1353)
T ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444432 223333333322 2233444444444444444443333333333333333333333
No 259
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=32.66 E-value=2.7e+02 Score=24.63 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 191 DMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 191 e~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
++-++++.+-...++..+.-+..|...++.+++..+..+..|+.-|...+..
T Consensus 39 ~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~ 90 (162)
T PF05565_consen 39 EEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEA 90 (162)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666777777888888888888888889999999998877654
No 260
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=32.60 E-value=8.2 Score=37.60 Aligned_cols=42 Identities=21% Similarity=0.485 Sum_probs=28.7
Q ss_pred ccccccc----cccceEEecCCCcccchhhHhhC----CCCCCCcccccceE
Q 019869 286 ICRACKA----KEASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNASV 329 (334)
Q Consensus 286 ~C~iC~~----~~~~vlllPC~HlclC~~C~~~l----~~CPvCr~~i~~~v 329 (334)
-|.+|.+ ....+-.+||+|.-- ..|...+ -.||+|.. +...+
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~~ 209 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDMS 209 (276)
T ss_pred CCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHHH
Confidence 3888876 456677789999842 4444432 79999998 55443
No 261
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=32.59 E-value=2.4e+02 Score=22.04 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019869 157 EEYLAKGVQDMKQRHM-ASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQM 211 (334)
Q Consensus 157 ~erlR~~lee~rqrh~-r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql 211 (334)
.+++...|.+-..-+. .+.+..+. ...||..-..++..+..+...+++|+.+|
T Consensus 37 i~~~~~~L~~~~~~~~~~~~~~~~~--y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 37 IDRLNEKLKELNEVEQINEPFDLDP--YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555554222 22333333 56777777777778888888787777665
No 262
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=32.07 E-value=2.9e+02 Score=22.78 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=15.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 188 QEKDMEIENMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 188 ReKe~Eie~~~krnaELeErl~ql~~E~q 216 (334)
+.+.++++.+..+..+.+.|+.+++.+-+
T Consensus 31 ~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 31 YAKREDIEKLEERLDEHDRRLQALETKLE 59 (106)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666665555555555555554433
No 263
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=31.76 E-value=4.2e+02 Score=24.98 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019869 194 IENMNRKNRELIERIKQMAAEAQNWHYRAKYN 225 (334)
Q Consensus 194 ie~~~krnaELeErl~ql~~E~q~Wq~~A~~n 225 (334)
+.++.++|.+|++++.++..+...-+....+|
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en 102 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAEN 102 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666655555544444454
No 264
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=31.74 E-value=1.3e+02 Score=22.91 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=16.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERI 208 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl 208 (334)
-|+..-+||+++.+++.||.-++
T Consensus 22 tL~~LH~EIe~Lq~~~~dL~~kL 44 (60)
T PF14916_consen 22 TLKGLHAEIERLQKRNKDLTFKL 44 (60)
T ss_pred HHHHHHHHHHHHHHhccccceee
Confidence 34555669999999999876544
No 265
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=31.36 E-value=27 Score=24.99 Aligned_cols=28 Identities=18% Similarity=0.618 Sum_probs=20.6
Q ss_pred ccccccccccceEEecCCCcccchhhHhhC
Q 019869 286 ICRACKAKEASVLLMPCRHLCLCKDCDVLV 315 (334)
Q Consensus 286 ~C~iC~~~~~~vlllPC~HlclC~~C~~~l 315 (334)
.|.+|......-+.+ .+++ +|.+|...+
T Consensus 1 ~CiiC~~~~~~GI~I-~~~f-IC~~CE~~i 28 (46)
T PF10764_consen 1 KCIICGKEKEEGIHI-YGKF-ICSDCEKEI 28 (46)
T ss_pred CeEeCCCcCCCCEEE-ECeE-ehHHHHHHh
Confidence 488898877754433 5777 899999875
No 266
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=31.31 E-value=4.4e+02 Score=24.60 Aligned_cols=101 Identities=28% Similarity=0.351 Sum_probs=70.2
Q ss_pred hhhhhHHHHHHhHhhHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 019869 132 LSLADNVRTELDRQKEEFDQYIKVQEE--YLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIK 209 (334)
Q Consensus 132 ~~l~~~l~~~l~rq~~EiD~~ir~q~e--rlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ 209 (334)
..|=++++.+|.+-..=-|.|.++-.. .|+....+. --...-+..+|..+..++-+|+.+|.+...++..++-+..
T Consensus 47 ~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~~~~~~--~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~ 124 (196)
T PF15272_consen 47 QQLRQELINELKQSKKLYDNYYKLYSKYQELKKSSKQS--EDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNK 124 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888888888887642 344322221 1223456778888888888999999999999998888888
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019869 210 QMAAEAQNWHYRAKYNESVVNLLKSNLQ 237 (334)
Q Consensus 210 ql~~E~q~Wq~~A~~nEa~a~~Lr~~Lq 237 (334)
.+..+.+ .... .-|+.+..|..+|.
T Consensus 125 el~~~r~--~e~~-~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 125 ELQNERE--RERI-AYESRIADLERQLN 149 (196)
T ss_pred HHHhHHH--HHHH-HHHHHHHHHHHHHH
Confidence 8876666 3333 34566666777665
No 267
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=31.29 E-value=2.8e+02 Score=28.94 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 192 MEIENMNRKNRELIERIKQMAAEAQNW 218 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~~E~q~W 218 (334)
+|-+.+..+..++|-.++.|..|+...
T Consensus 41 a~~~ai~a~~~~~E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 41 AESRAIKAKLQEKELELNRLQEENTQL 67 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666443
No 268
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=31.14 E-value=4.4e+02 Score=24.62 Aligned_cols=93 Identities=25% Similarity=0.308 Sum_probs=48.8
Q ss_pred HHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 137 NVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRH--MASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAE 214 (334)
Q Consensus 137 ~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh--~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E 214 (334)
||.....+....|.-|-. -.|.|+..+++...+. ...-..++-..+-.+|....+|| .+-.++...|
T Consensus 94 dl~~ryek~K~vi~~~k~-NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei----------~~v~~~~~~e 162 (207)
T PF05010_consen 94 DLHKRYEKQKEVIEGYKK-NEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEI----------AQVRSKHQAE 162 (207)
T ss_pred HHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhHHH
Confidence 356666667666666544 3456666665432221 11112222222223333333333 3444445567
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019869 215 AQNWHYRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 215 ~q~Wq~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
..+.+...+..+-.+.+|..+|+|-.
T Consensus 163 ~~aLqa~lkk~e~~~~SLe~~LeQK~ 188 (207)
T PF05010_consen 163 LLALQASLKKEEMKVQSLEESLEQKT 188 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777654
No 269
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.11 E-value=6.8e+02 Score=27.11 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=6.3
Q ss_pred HHHHHHhHhhHHHH
Q 019869 137 NVRTELDRQKEEFD 150 (334)
Q Consensus 137 ~l~~~l~rq~~EiD 150 (334)
.+...+.+-..|+.
T Consensus 353 ~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 353 MLKSSLKQLEEELE 366 (594)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 270
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=31.07 E-value=2.5e+02 Score=29.48 Aligned_cols=11 Identities=18% Similarity=0.558 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 019869 170 RHMASFLSAIE 180 (334)
Q Consensus 170 rh~r~ll~ave 180 (334)
+|++.+..-+|
T Consensus 242 ehv~km~kdle 252 (575)
T KOG4403|consen 242 EHVNKMMKDLE 252 (575)
T ss_pred HHHHHHHHHHH
Confidence 34433333333
No 271
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=31.06 E-value=3.9e+02 Score=23.91 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=18.5
Q ss_pred hHHHHHHhHhhHHHHHHHHHhHHHHHHHHH
Q 019869 136 DNVRTELDRQKEEFDQYIKVQEEYLAKGVQ 165 (334)
Q Consensus 136 ~~l~~~l~rq~~EiD~~ir~q~erlR~~le 165 (334)
|.+++.-+.+..|+. .++...++|....+
T Consensus 39 e~~~~~n~~~~~e~~-~L~~d~e~L~~q~~ 67 (158)
T PF09744_consen 39 ESLASRNQEHEVELE-LLREDNEQLETQYE 67 (158)
T ss_pred HHHHHhhhhhhhHHH-HHHHHHHHHHHHHH
Confidence 566777777777777 44556667665443
No 272
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=30.84 E-value=18 Score=26.15 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=4.4
Q ss_pred CCCCCccccc
Q 019869 317 VCPVCQFVKN 326 (334)
Q Consensus 317 ~CPvCr~~i~ 326 (334)
.||+|..+++
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 6777777664
No 273
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=30.76 E-value=34 Score=39.83 Aligned_cols=46 Identities=24% Similarity=0.557 Sum_probs=33.1
Q ss_pred ccccccccccccceEEec-CCCcc----cchhhHhhC--C-----CCCCCcccccceEE
Q 019869 284 QMICRACKAKEASVLLMP-CRHLC----LCKDCDVLV--A-----VCPVCQFVKNASVL 330 (334)
Q Consensus 284 ~~~C~iC~~~~~~vlllP-C~Hlc----lC~~C~~~l--~-----~CPvCr~~i~~~v~ 330 (334)
...|.-|...-.. .+.| ||+.. .|..|...+ . .||-|..+......
T Consensus 667 ~rkCPkCG~~t~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~ 724 (1337)
T PRK14714 667 RRRCPSCGTETYE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQR 724 (1337)
T ss_pred EEECCCCCCcccc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccce
Confidence 4789999986544 3777 88652 599998764 2 89999988766544
No 274
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=30.73 E-value=33 Score=25.23 Aligned_cols=20 Identities=45% Similarity=1.315 Sum_probs=12.3
Q ss_pred CCCcccchhhHhh----CCCCCCCc
Q 019869 302 CRHLCLCKDCDVL----VAVCPVCQ 322 (334)
Q Consensus 302 C~HlclC~~C~~~----l~~CPvCr 322 (334)
|++. +|.+|+.- +..||.|.
T Consensus 27 C~~~-FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 27 CKNH-FCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TT---B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCc-cccCcChhhhccccCCcCCC
Confidence 4444 89999875 69999995
No 275
>COG5484 Uncharacterized conserved protein [Function unknown]
Probab=30.65 E-value=3.1e+02 Score=26.82 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=17.7
Q ss_pred ccccccCCCCCCCCccccccccc
Q 019869 89 DRSASILNPNPVSTGLRLSYDDD 111 (334)
Q Consensus 89 ~~~~~~~~~~~vstglrls~~~~ 111 (334)
+..+.++|||+|.||.+--|+-+
T Consensus 86 gG~ap~gN~na~t~G~fskl~pe 108 (279)
T COG5484 86 GGNAPKGNQNAVTHGEFSKLLPE 108 (279)
T ss_pred CCCCCCCCccccccCchhhcChh
Confidence 44567899999999987777654
No 276
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.55 E-value=5.9e+02 Score=26.08 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=7.9
Q ss_pred HHHHHHHHhHHH
Q 019869 148 EFDQYIKVQEEY 159 (334)
Q Consensus 148 EiD~~ir~q~er 159 (334)
+||.++.+..++
T Consensus 26 ~vd~i~~ld~~~ 37 (425)
T PRK05431 26 DVDELLELDEER 37 (425)
T ss_pred cHHHHHHHHHHH
Confidence 477777766553
No 277
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=30.14 E-value=1.5e+02 Score=31.04 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 019869 204 LIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAIS 241 (334)
Q Consensus 204 LeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~ 241 (334)
||.|+..-.+|++..+....+-|.-=..|-.+|.++..
T Consensus 277 LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 277 LESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 45555555556666666555554444455555555544
No 278
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=29.85 E-value=24 Score=35.74 Aligned_cols=38 Identities=29% Similarity=0.701 Sum_probs=24.6
Q ss_pred ccccccccccccceEEecCCCcccchhhHhh-------------------------CCCCCCCcccc
Q 019869 284 QMICRACKAKEASVLLMPCRHLCLCKDCDVL-------------------------VAVCPVCQFVK 325 (334)
Q Consensus 284 ~~~C~iC~~~~~~vlllPC~HlclC~~C~~~-------------------------l~~CPvCr~~i 325 (334)
.-.|++|+++.+..-. | +-.|+.|-.. -+.||.||-.+
T Consensus 15 ~ElCPVCGDkVSGYHY---G-LLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQK 77 (475)
T KOG4218|consen 15 GELCPVCGDKVSGYHY---G-LLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQK 77 (475)
T ss_pred ccccccccCcccccee---e-eeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHHH
Confidence 4479999998876421 1 1157777431 27899999665
No 279
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=29.74 E-value=4.1e+02 Score=24.09 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=13.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQ 210 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~q 210 (334)
+|=+--.|||.+..+...||+++++
T Consensus 119 qll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 119 QLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333334666666666666666655
No 280
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=29.63 E-value=8.2e+02 Score=27.24 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=6.1
Q ss_pred HhhHHHHHHHH
Q 019869 144 RQKEEFDQYIK 154 (334)
Q Consensus 144 rq~~EiD~~ir 154 (334)
....+++.+|.
T Consensus 508 ~~~~~~~~li~ 518 (771)
T TIGR01069 508 EFKEEINVLIE 518 (771)
T ss_pred hhHHHHHHHHH
Confidence 44456666664
No 281
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=29.56 E-value=22 Score=25.92 Aligned_cols=12 Identities=50% Similarity=0.919 Sum_probs=5.8
Q ss_pred CCCCCcccccce
Q 019869 317 VCPVCQFVKNAS 328 (334)
Q Consensus 317 ~CPvCr~~i~~~ 328 (334)
+||+|.+++..+
T Consensus 36 ~CP~C~a~K~~F 47 (50)
T cd00730 36 VCPVCGAGKDDF 47 (50)
T ss_pred CCCCCCCcHHHc
Confidence 455555544433
No 282
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=29.41 E-value=7.7e+02 Score=26.82 Aligned_cols=77 Identities=10% Similarity=0.290 Sum_probs=47.9
Q ss_pred HhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 142 LDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHY 220 (334)
Q Consensus 142 l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~ 220 (334)
+++|..++.+=|....++.-....|.|. ..+.+...+ ..+..||-..|.+++....+...|++.+..+..-..+|.-
T Consensus 344 ~~q~~~~~~~~l~~~~~~~~~~~~e~~~-~~~~~~~~~-~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~l 420 (656)
T PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRV-KTEQAQASV-HQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMI 420 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHH
Confidence 3455555555554444445555555532 233333222 3355677788888888888888999999888776667764
No 283
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=29.29 E-value=24 Score=38.06 Aligned_cols=41 Identities=29% Similarity=0.552 Sum_probs=31.0
Q ss_pred cccccccccccccccceEEecCCCcccch--hhHhh-----------CCCCCCCccccc
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCK--DCDVL-----------VAVCPVCQFVKN 326 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~--~C~~~-----------l~~CPvCr~~i~ 326 (334)
+.....|.+++.+ +.+||++. .|+ .|.+. ...||||.+.+.
T Consensus 303 ~~vSL~CPl~~~R----m~~P~r~~-~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 303 LRVSLNCPLSKMR----MSLPARGH-TCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred ceeEecCCcccce----eecCCccc-ccccceecchhhhHHhccCCCeeeCccCCcccc
Confidence 3456789998876 45799988 788 78664 289999988763
No 284
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=28.94 E-value=5.6e+02 Score=25.10 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=9.8
Q ss_pred ccccccCCCcceecCc
Q 019869 10 VVPVFLDENSFQYQTN 25 (334)
Q Consensus 10 ~~~~~~~~~~~~~~~~ 25 (334)
..|++.-+..|..+..
T Consensus 26 ~~p~Y~s~a~~~v~~~ 41 (362)
T TIGR01010 26 ASDRYVSESSFVVRSP 41 (362)
T ss_pred hcccceEEEEEEEecC
Confidence 3466666666666654
No 285
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=28.66 E-value=23 Score=23.19 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=12.2
Q ss_pred CCCCCCCcccccceEE
Q 019869 315 VAVCPVCQFVKNASVL 330 (334)
Q Consensus 315 l~~CPvCr~~i~~~v~ 330 (334)
-..||+|..+...++.
T Consensus 17 ~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 17 PWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCcCcCCCCcHHHcEE
Confidence 4699999988776654
No 286
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.61 E-value=5.8e+02 Score=25.12 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=9.0
Q ss_pred cccccccccceEEecCCCc
Q 019869 287 CRACKAKEASVLLMPCRHL 305 (334)
Q Consensus 287 C~iC~~~~~~vlllPC~Hl 305 (334)
+....-......|+|+|..
T Consensus 186 a~~l~~~f~~y~l~P~Gs~ 204 (314)
T PF04111_consen 186 AKKLNFKFQRYRLVPMGSF 204 (314)
T ss_dssp HHHCT---SSEEEE--GGG
T ss_pred HHHhCCCcccceeEecCCC
Confidence 3344455566888888876
No 287
>PRK02793 phi X174 lysis protein; Provisional
Probab=28.46 E-value=2.8e+02 Score=21.44 Aligned_cols=43 Identities=14% Similarity=0.131 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 019869 199 RKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAIS 241 (334)
Q Consensus 199 krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~ 241 (334)
.|..+||.++.-.+.-....-...-.....+..|+.+|..+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333223333444444556666655544
No 288
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.36 E-value=7.4e+02 Score=26.27 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=10.8
Q ss_pred HHhhhHHHHHHHHHHHHHH
Q 019869 221 RAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 221 ~A~~nEa~a~~Lr~~LqQ~ 239 (334)
.+..+|..+..|++.|+.+
T Consensus 360 ei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 360 EIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHhhHHHHHHHHHHHhcC
Confidence 3445556666666666543
No 289
>PRK14127 cell division protein GpsB; Provisional
Probab=28.26 E-value=1.7e+02 Score=24.70 Aligned_cols=11 Identities=18% Similarity=0.549 Sum_probs=7.5
Q ss_pred hHHHHHHHHHh
Q 019869 146 KEEFDQYIKVQ 156 (334)
Q Consensus 146 ~~EiD~~ir~q 156 (334)
..|+|.||..=
T Consensus 25 ~~EVD~FLd~V 35 (109)
T PRK14127 25 QDEVDKFLDDV 35 (109)
T ss_pred HHHHHHHHHHH
Confidence 46888887643
No 290
>PRK14139 heat shock protein GrpE; Provisional
Probab=28.24 E-value=1.9e+02 Score=26.54 Aligned_cols=27 Identities=0% Similarity=0.030 Sum_probs=14.5
Q ss_pred HhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019869 144 RQKEEFDQYIKVQEEYLAKGVQDMKQRH 171 (334)
Q Consensus 144 rq~~EiD~~ir~q~erlR~~lee~rqrh 171 (334)
--..|++.+ ..+.+.++..+.+.+.+.
T Consensus 29 ~~~~e~~~l-~~~l~~le~e~~elkd~~ 55 (185)
T PRK14139 29 AAEDAAPAL-EAELAEAEAKAAELQDSF 55 (185)
T ss_pred ccchhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 445666653 345566666666544333
No 291
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=28.24 E-value=4.6e+02 Score=23.86 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 019869 159 YLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQ 238 (334)
Q Consensus 159 rlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ 238 (334)
++|..+...-.++..-.=+++.-++-+.|-. +.....+..++.+|++....|..+...|+......+.....++.....
T Consensus 88 rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~-e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k 166 (189)
T PF10211_consen 88 RVRDEYRMTLDAYQTLYESSIAFGMRKALQA-EQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEK 166 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHh
Q 019869 239 AIS 241 (334)
Q Consensus 239 ~~~ 241 (334)
...
T Consensus 167 ~~~ 169 (189)
T PF10211_consen 167 KHQ 169 (189)
T ss_pred HHH
No 292
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=28.03 E-value=5.8e+02 Score=24.98 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=25.7
Q ss_pred hhhHHHHHHhHhhHHHHHHHHHhHHHHHHHHH
Q 019869 134 LADNVRTELDRQKEEFDQYIKVQEEYLAKGVQ 165 (334)
Q Consensus 134 l~~~l~~~l~rq~~EiD~~ir~q~erlR~~le 165 (334)
.+++....|+.|-.=|=.+-|.+...+|..|.
T Consensus 112 a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR 143 (325)
T PF08317_consen 112 ADPDMRLLMDNQFQLVKTYARLEAKKMWYEWR 143 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777778888888888888899888887776
No 293
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=27.85 E-value=9e+02 Score=27.12 Aligned_cols=46 Identities=7% Similarity=0.169 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019869 190 KDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSN 235 (334)
Q Consensus 190 Ke~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~ 235 (334)
.+.+++.+.++..+++..+..+..+-..++......+.....++..
T Consensus 873 ~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 918 (1164)
T TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555444444444443333333333333
No 294
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=27.81 E-value=8.8e+02 Score=27.00 Aligned_cols=9 Identities=11% Similarity=0.091 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 019869 157 EEYLAKGVQ 165 (334)
Q Consensus 157 ~erlR~~le 165 (334)
.++|=..|+
T Consensus 513 ~~~li~~L~ 521 (771)
T TIGR01069 513 INVLIEKLS 521 (771)
T ss_pred HHHHHHHHH
Confidence 333333333
No 295
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=27.73 E-value=4e+02 Score=31.68 Aligned_cols=44 Identities=27% Similarity=0.670 Sum_probs=31.9
Q ss_pred cccccccccccccc-ceEEecCCCcccchhhHhh----CCCCCCCccccc
Q 019869 282 NHQMICRACKAKEA-SVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKN 326 (334)
Q Consensus 282 ~~~~~C~iC~~~~~-~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~ 326 (334)
.....|.+|.+--. --.+.-|+|. +|..|... -..||+|...+.
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~-~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHE-PCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechh-HhhhHHHHHHHHhccCcchhhhhh
Confidence 45569999998544 2344469998 88889764 389999986553
No 296
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=27.71 E-value=2.1e+02 Score=29.88 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019869 202 RELIERIKQMAAEAQNWHYRAKYNESVVNLLK 233 (334)
Q Consensus 202 aELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr 233 (334)
-|||-.++=-.+|+..||.+|-+.-..|.+|+
T Consensus 353 eeLESIVRiKqAEA~MFQ~kAdEARrEAE~Lq 384 (446)
T PF07227_consen 353 EELESIVRIKQAEAKMFQLKADEARREAEGLQ 384 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555667777766665555555554
No 297
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=27.59 E-value=7.7e+02 Score=26.21 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=9.5
Q ss_pred cccccccccccc
Q 019869 285 MICRACKAKEAS 296 (334)
Q Consensus 285 ~~C~iC~~~~~~ 296 (334)
..|+||.....+
T Consensus 293 lyC~vCnKsFKs 304 (508)
T KOG0717|consen 293 LYCVVCNKSFKS 304 (508)
T ss_pred eEEeeccccccc
Confidence 789999876654
No 298
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.49 E-value=8e+02 Score=26.38 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019869 192 MEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~ 212 (334)
.+++.+.++..+++..++++.
T Consensus 449 ~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 449 RQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 299
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=27.39 E-value=2.4e+02 Score=25.07 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 019869 196 NMNRKNRELIERI 208 (334)
Q Consensus 196 ~~~krnaELeErl 208 (334)
.+..|..+|+.++
T Consensus 58 ~~e~RI~~L~~~L 70 (158)
T PRK05892 58 RLDDRINELDRRL 70 (158)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 300
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=27.36 E-value=5.1e+02 Score=27.99 Aligned_cols=10 Identities=40% Similarity=0.786 Sum_probs=5.2
Q ss_pred hhhhhcCCCC
Q 019869 29 QLQLFGNLPA 38 (334)
Q Consensus 29 ~~~~~~~~~~ 38 (334)
-|-=||-.|.
T Consensus 39 ~l~~~gk~~~ 48 (591)
T KOG2412|consen 39 KLNGFGKYPQ 48 (591)
T ss_pred hhcccCCCcc
Confidence 4555555553
No 301
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.21 E-value=3e+02 Score=21.41 Aligned_cols=45 Identities=27% Similarity=0.275 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019869 189 EKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNL 236 (334)
Q Consensus 189 eKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~L 236 (334)
....|++.+..+|..|.+....|..|++..+. +.+++-..|++=|
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~---e~~~~~~rl~~LL 66 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEENEQLKQ---ERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 35568888999999999999999999987663 3444444444433
No 302
>PRK02224 chromosome segregation protein; Provisional
Probab=27.02 E-value=8.8e+02 Score=26.74 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=32.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNL 231 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~ 231 (334)
+-.+.+.++....+..+|++++..+..+...|...+...+.....
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~ 569 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 334456677777888888888888888888888866655544433
No 303
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.93 E-value=7.7e+02 Score=26.05 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 189 EKDMEIENMNRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 189 eKe~Eie~~~krnaELeErl~ql~~E~q~ 217 (334)
-.+.+...+.++..+|..+++++..|-..
T Consensus 372 ~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 372 DLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555444443
No 304
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.84 E-value=3e+02 Score=24.18 Aligned_cols=10 Identities=10% Similarity=0.099 Sum_probs=3.9
Q ss_pred hHHHHHHHHH
Q 019869 156 QEEYLAKGVQ 165 (334)
Q Consensus 156 q~erlR~~le 165 (334)
+...|+..+.
T Consensus 80 ei~~L~~el~ 89 (169)
T PF07106_consen 80 EIKELREELA 89 (169)
T ss_pred HHHHHHHHHH
Confidence 3444443333
No 305
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.73 E-value=3e+02 Score=31.13 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=40.4
Q ss_pred hHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 143 DRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 143 ~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~ 213 (334)
..|..|.+.|.+.+.|.|++.+.+....--+..+..+=...-.+|+..-.-|..+..-.-.+++-+.++-.
T Consensus 956 l~q~se~~~l~r~~~e~llr~l~~~v~~~d~~kia~~l~~lkg~ld~d~~~ia~~~~~lf~f~DaV~~VLR 1026 (1226)
T KOG4279|consen 956 LIQQSETELLVRVHMEMLLRGLRDFVLKKDRTKIAKMLDDLKGLLDADTAGIAQINLALFHFSDAVQPVLR 1026 (1226)
T ss_pred HHhccccchhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhccccccchhhhhhhhccchHHHHHHHH
Confidence 44667888888888888888877654333333333333333334444445555555544455655555443
No 306
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.69 E-value=5.1e+02 Score=23.89 Aligned_cols=70 Identities=24% Similarity=0.325 Sum_probs=46.5
Q ss_pred HHHhHhhHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHH
Q 019869 140 TELDRQKEEFDQYIKV------QEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKD-MEIENMNRKNRELIERIK 209 (334)
Q Consensus 140 ~~l~rq~~EiD~~ir~------q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe-~Eie~~~krnaELeErl~ 209 (334)
+-|.+|..++.+||+- -.+.+-..|++.++.+...-+.+.++++..|-|.-- -|-.++.|...-|+..++
T Consensus 27 s~iK~qiRd~eRlLkk~~LP~~Vr~e~er~L~~Lk~ql~~~~l~~k~rkif~ryrkVRFFErkKaeR~irrLeK~~k 103 (199)
T KOG4484|consen 27 SSIKNQIRDLERLLKKKDLPPEVREELERKLQDLKKQLDNHELLAKERKIFKRYRKVRFFERKKAERSIRRLEKLIK 103 (199)
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4489999999999992 234444566777777777778889998887754322 344455555555555554
No 307
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=26.66 E-value=4.6e+02 Score=23.36 Aligned_cols=54 Identities=24% Similarity=0.317 Sum_probs=34.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 019869 147 EEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRK 200 (334)
Q Consensus 147 ~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~kr 200 (334)
.||+.+=....+-|+..|.+.-+.+-.....-+|....++..+|+.-|+++.+.
T Consensus 94 ~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~~i~ki~~~ 147 (154)
T PF14738_consen 94 EEIQELQERRLELLKKMLQEREKEQEEANEQRLERLWQKKQKEKERKIEKIEKE 147 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456654444455566666666666666666667777777777777777666654
No 308
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=26.58 E-value=8.6e+02 Score=26.46 Aligned_cols=43 Identities=14% Similarity=0.073 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019869 198 NRKNRELIERIKQM---AAEAQNWHYRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 198 ~krnaELeErl~ql---~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
.++..+++.++.++ +.|-...++.+..++..-..|-..++++.
T Consensus 358 ~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 358 VSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433 34444555556666666666666666664
No 309
>PLN03188 kinesin-12 family protein; Provisional
Probab=26.51 E-value=1.2e+03 Score=27.98 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 189 EKDMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 189 eKe~Eie~~~krnaELeErl~ql~~ 213 (334)
|+|.|-+-+.+.|.-|+-+++-...
T Consensus 1170 ereker~~~~~enk~l~~qlrdtae 1194 (1320)
T PLN03188 1170 EREKERRYLRDENKSLQAQLRDTAE 1194 (1320)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHH
Confidence 3444444555566666666665544
No 310
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=26.49 E-value=2.2e+02 Score=19.52 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 206 ERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 206 Erl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
.+++.+..=++.|+..-.+.|+-|-+|.+.|.++
T Consensus 2 ~ql~~v~e~N~qWq~YD~qRE~YV~~L~~rl~el 35 (35)
T PF12180_consen 2 QQLRDVLEKNQQWQKYDQQREAYVRGLLARLKEL 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 3556666778899999999999999999887653
No 311
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.47 E-value=4.2e+02 Score=24.76 Aligned_cols=45 Identities=16% Similarity=0.051 Sum_probs=26.2
Q ss_pred HHHhHh--hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 140 TELDRQ--KEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLA 184 (334)
Q Consensus 140 ~~l~rq--~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~ 184 (334)
.|+||| +.|-|++=.+++.--+..+-+..+...-..-.+.|+..+
T Consensus 82 FHvYR~lRRrEq~Rl~~md~~a~Ke~~daefq~r~ek~~kaaEeKTa 128 (213)
T KOG4055|consen 82 FHVYRHLRRREQDRLDYMDADANKELLDAEFQIRLEKNQKAAEEKTA 128 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777 468888877776666555554444444444444444443
No 312
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=26.40 E-value=31 Score=34.34 Aligned_cols=38 Identities=26% Similarity=0.680 Sum_probs=28.6
Q ss_pred cccccccccccceEEec-CCCcccchhhHhh-----CCCCCCCcc
Q 019869 285 MICRACKAKEASVLLMP-CRHLCLCKDCDVL-----VAVCPVCQF 323 (334)
Q Consensus 285 ~~C~iC~~~~~~vlllP-C~HlclC~~C~~~-----l~~CPvCr~ 323 (334)
..|..|..--.+-+-.| |+|. +|.+|... --.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence 68999887655544444 6777 99999884 379999976
No 313
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=26.22 E-value=2.9e+02 Score=25.36 Aligned_cols=21 Identities=24% Similarity=0.618 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019869 193 EIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 193 Eie~~~krnaELeErl~ql~~ 213 (334)
.+++++++|.+|++++..|..
T Consensus 48 Q~~~LR~~~~~L~~~l~~Li~ 68 (225)
T PF04340_consen 48 QLERLRERNRQLEEQLEELIE 68 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666555553
No 314
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.08 E-value=5.5e+02 Score=24.02 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 019869 190 KDMEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 190 Ke~Eie~~~krnaELeErl~ql~ 212 (334)
.+..++...++..+|+++++++.
T Consensus 75 l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 75 LERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 315
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=25.88 E-value=36 Score=21.49 Aligned_cols=18 Identities=28% Similarity=0.903 Sum_probs=10.1
Q ss_pred chhhHhh----CCCCCCCcccc
Q 019869 308 CKDCDVL----VAVCPVCQFVK 325 (334)
Q Consensus 308 C~~C~~~----l~~CPvCr~~i 325 (334)
|.+|... ...||.|.-.+
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCCC
Confidence 4555543 36777776544
No 316
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=25.80 E-value=39 Score=33.91 Aligned_cols=30 Identities=30% Similarity=0.804 Sum_probs=26.8
Q ss_pred cccccccccccccceEEecCC--CcccchhhHh
Q 019869 283 HQMICRACKAKEASVLLMPCR--HLCLCKDCDV 313 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~--HlclC~~C~~ 313 (334)
....|..|-+....|+.+||. |. .|..|..
T Consensus 220 ~ni~C~~Ctdv~~~vlvf~Cns~Hv-tC~dCFr 251 (446)
T KOG0006|consen 220 RNITCITCTDVRSPVLVFQCNSRHV-TCLDCFR 251 (446)
T ss_pred ccceeEEecCCccceEEEecCCcee-ehHHhhh
Confidence 456899999999999999999 98 8999976
No 317
>PLN03188 kinesin-12 family protein; Provisional
Probab=25.59 E-value=9e+02 Score=28.83 Aligned_cols=37 Identities=5% Similarity=0.109 Sum_probs=27.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 184 AKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHY 220 (334)
Q Consensus 184 ~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~ 220 (334)
.=||||.|+-..-+.++.++.|+...++..+-...++
T Consensus 1203 lvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkr 1239 (1320)
T PLN03188 1203 LVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKR 1239 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888877777765554443
No 318
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=25.18 E-value=7e+02 Score=24.93 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHH
Q 019869 207 RIKQMAAEAQNW-HYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 207 rl~ql~~E~q~W-q~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
++.++..|.... ..+-++-|...+.|...|.|+
T Consensus 85 kl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qL 118 (310)
T PF09755_consen 85 KLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQL 118 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 233344444445554444444
No 319
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=25.17 E-value=42 Score=33.53 Aligned_cols=45 Identities=24% Similarity=0.570 Sum_probs=34.9
Q ss_pred ccccccccccc----ccceEEecCCCcccchhhHhhC----CCCCCCcccccce
Q 019869 283 HQMICRACKAK----EASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNAS 328 (334)
Q Consensus 283 ~~~~C~iC~~~----~~~vlllPC~HlclC~~C~~~l----~~CPvCr~~i~~~ 328 (334)
....|.+|.+- ....+=.||+|. +|-.|.... ..||.||.+....
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred cCCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccC
Confidence 34789999983 345566788999 999998864 8999999877544
No 320
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=25.12 E-value=7e+02 Score=24.95 Aligned_cols=53 Identities=11% Similarity=0.226 Sum_probs=33.9
Q ss_pred HhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019869 188 QEKD---MEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 188 ReKe---~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
++++ .++|++.+++..|+-.++.+..|-+.-..---.-.-.|..|..+|..++
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L 181 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYIL 181 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4454 5677888888888888888887766433222222234566777776666
No 321
>PF15556 Zwint: ZW10 interactor
Probab=25.10 E-value=6e+02 Score=24.17 Aligned_cols=67 Identities=22% Similarity=0.184 Sum_probs=40.1
Q ss_pred HHHHHhHhhHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 019869 138 VRTELDRQKEEFDQYIKVQEEYLAKGVQD------MKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIE 206 (334)
Q Consensus 138 l~~~l~rq~~EiD~~ir~q~erlR~~lee------~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeE 206 (334)
=+...+.|..|+-+-++.|.|-++.+|-+ .-+|-...|-.++|.--+++- -..|..++..+-|.|..
T Consensus 60 kai~aKeQWKeLKAtYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKq--va~eK~r~AQkqwqlqQ 132 (252)
T PF15556_consen 60 KAIEAKEQWKELKATYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQ--VAMEKLRAAQKQWQLQQ 132 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 35567889999999999999988877652 223344456666665433321 11233344444454444
No 322
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.06 E-value=4.8e+02 Score=23.32 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 182 GLAKKLQEKDMEIENMNRKNRELIERIK--------QMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 182 ~~~~rLReKe~Eie~~~krnaELeErl~--------ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
...+++...+++++.+.++.....+..+ ....|...-+..-...+..+..|+.|.+.+...
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 323
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=24.98 E-value=4.1e+02 Score=22.25 Aligned_cols=16 Identities=19% Similarity=0.634 Sum_probs=6.4
Q ss_pred hHHHHHHhHhhHHHHH
Q 019869 136 DNVRTELDRQKEEFDQ 151 (334)
Q Consensus 136 ~~l~~~l~rq~~EiD~ 151 (334)
++|...|++=...|+.
T Consensus 9 ~~I~~~i~~i~~~v~~ 24 (151)
T cd00179 9 EEIRGNIDKISEDVEE 24 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444433333333
No 324
>PRK14157 heat shock protein GrpE; Provisional
Probab=24.97 E-value=2.1e+02 Score=27.25 Aligned_cols=20 Identities=5% Similarity=-0.145 Sum_probs=12.1
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 019869 153 IKVQEEYLAKGVQDMKQRHM 172 (334)
Q Consensus 153 ir~q~erlR~~lee~rqrh~ 172 (334)
+..+.+.++..+++.+.+..
T Consensus 82 ~~~~l~~le~e~~e~kd~ll 101 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQ 101 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44566777777776654443
No 325
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=24.85 E-value=43 Score=33.16 Aligned_cols=41 Identities=24% Similarity=0.543 Sum_probs=27.7
Q ss_pred cccccccccccccceEEecC-----CCcccchhhHhh--C--CCCCCCccc
Q 019869 283 HQMICRACKAKEASVLLMPC-----RHLCLCKDCDVL--V--AVCPVCQFV 324 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC-----~HlclC~~C~~~--l--~~CPvCr~~ 324 (334)
....|+||+..+...++..- ||+ .|.-|... + .+||.|...
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL-~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYL-HCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEE-EcCCCCCcccccCccCCCCCCC
Confidence 35689999999864443221 333 68888764 2 689999874
No 326
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=24.81 E-value=7.6e+02 Score=25.22 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 206 ERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 206 Erl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
.++.++..+-......-..+...+..|+.+++.+...
T Consensus 254 ~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~ 290 (498)
T TIGR03007 254 GRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQ 290 (498)
T ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Confidence 3444555555555555555666667777777666554
No 327
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=24.80 E-value=3.4e+02 Score=23.59 Aligned_cols=47 Identities=30% Similarity=0.388 Sum_probs=35.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 019869 185 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQ 238 (334)
Q Consensus 185 ~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ 238 (334)
+-|.+||+-|+-+...|.-|+|.+.++... ..+...++..|+.+|+.
T Consensus 78 Kvl~aKdETI~~lk~EN~fLKeAl~s~QE~-------y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 78 KVLDAKDETIEALKNENRFLKEALYSMQEL-------YEEDRKTIELLREQLKI 124 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHh
Confidence 346789999999999999999999877543 33555667778887764
No 328
>PRK04023 DNA polymerase II large subunit; Validated
Probab=24.79 E-value=53 Score=37.57 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=33.5
Q ss_pred cccccccccccccceEEec-CCC----cccchhhHhhC--CCCCCCcccccceEEE
Q 019869 283 HQMICRACKAKEASVLLMP-CRH----LCLCKDCDVLV--AVCPVCQFVKNASVLV 331 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllP-C~H----lclC~~C~~~l--~~CPvCr~~i~~~v~v 331 (334)
..+.|..|.... .....| ||. ..+|..|.... ..||-|.........+
T Consensus 625 g~RfCpsCG~~t-~~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~~~s~~ 679 (1121)
T PRK04023 625 GRRKCPSCGKET-FYRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTPYSKR 679 (1121)
T ss_pred cCccCCCCCCcC-CcccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCCccceE
Confidence 456899999874 334556 764 35799997765 6799999887655443
No 329
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=24.76 E-value=1.1e+03 Score=27.08 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=14.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNW 218 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql~~E~q~W 218 (334)
.+.+-+.|+..+..+..+|+..+..+..+.-.|
T Consensus 495 ~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~ 527 (980)
T KOG0980|consen 495 ALESLRQELALLLIELEELQRTLSNLAQSHNNQ 527 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333444444444444444444444444433333
No 330
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=24.72 E-value=4e+02 Score=22.03 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=10.3
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 019869 147 EEFDQYIKVQEEYLAKGV 164 (334)
Q Consensus 147 ~EiD~~ir~q~erlR~~l 164 (334)
.|+|..|.-...+.+...
T Consensus 11 ~ev~~~i~k~~~~~~~~~ 28 (125)
T PF14265_consen 11 EEVDKIIKKRLARWEKKQ 28 (125)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 347777766555555443
No 331
>PRK14155 heat shock protein GrpE; Provisional
Probab=24.72 E-value=2.1e+02 Score=26.72 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019869 192 MEIENMNRKNRELIERIKQ 210 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~q 210 (334)
+|.++.+||...=.+.++.
T Consensus 41 AefeN~RKR~~kE~e~~~~ 59 (208)
T PRK14155 41 AEAENTKRRAEREMNDARA 59 (208)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555554433333333
No 332
>PF14645 Chibby: Chibby family
Probab=24.71 E-value=2.5e+02 Score=23.77 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019869 191 DMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKS 234 (334)
Q Consensus 191 e~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~ 234 (334)
..+..++.+++..|+|...-|..+.+..-+.-.+..+.+..+..
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek 113 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEK 113 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888887777766666555554443333
No 333
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.52 E-value=7.5e+02 Score=25.19 Aligned_cols=8 Identities=25% Similarity=0.762 Sum_probs=3.4
Q ss_pred CCCCCCCc
Q 019869 38 AGCSIDPV 45 (334)
Q Consensus 38 ~~~~~~~~ 45 (334)
+-|.+.|-
T Consensus 85 P~c~VnPT 92 (365)
T KOG2391|consen 85 PICYVNPT 92 (365)
T ss_pred CeEEecCC
Confidence 34444443
No 334
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=24.52 E-value=1.9e+02 Score=31.08 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 160 LAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNW 218 (334)
Q Consensus 160 lR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~W 218 (334)
+-+....+||+.+. .-+| .||.+...|-+.+++.|+.|+.|+.-+..|++.-
T Consensus 291 esA~~SRkKKKEy~---~~Le----~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~ 342 (655)
T KOG4343|consen 291 ESACQSRKKKKEYM---LGLE----ARLQALLSENEQLKKENATLKRQLDELVSENQRL 342 (655)
T ss_pred HHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccc
Confidence 44444555665552 3333 4778888899999999999999999999998754
No 335
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=24.49 E-value=2.9e+02 Score=26.69 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=24.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQMAAEA 215 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql~~E~ 215 (334)
++|+...||.++.+.-..||-+|+.|--..
T Consensus 72 ~IRdLNDeINkL~rEK~~WE~rI~~LGG~d 101 (255)
T PF06246_consen 72 QIRDLNDEINKLIREKRHWERRIKELGGPD 101 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 579999999999999888999998876443
No 336
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=24.36 E-value=5.6e+02 Score=23.52 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=27.6
Q ss_pred HHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 137 NVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKL 187 (334)
Q Consensus 137 ~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rL 187 (334)
++.-+++++-.|+ | .+.=+|+....+..++|...+|..+.+.+.+=-
T Consensus 77 e~~eEmeK~~~~L---L-~EELkLqe~~A~e~~~~~~~~lleAkk~asqYQ 123 (176)
T PF06364_consen 77 EVSEEMEKNFVDL---L-SEELKLQEAVANENQRRADMALLEAKKMASQYQ 123 (176)
T ss_pred hhhHHHHhhHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544332 2 233456667777788888877777666665444
No 337
>PRK04325 hypothetical protein; Provisional
Probab=24.31 E-value=3.4e+02 Score=21.06 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 019869 194 IENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAIS 241 (334)
Q Consensus 194 ie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~ 241 (334)
|..+.-+.+-+|+-+..|... .-.....+..|+.+|..+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~v-------v~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNAT-------VARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433 33333444555555555543
No 338
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.09 E-value=1.6e+02 Score=23.55 Aligned_cols=29 Identities=17% Similarity=0.254 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 190 KDMEIENMNRKNRELIERIKQMAAEAQNW 218 (334)
Q Consensus 190 Ke~Eie~~~krnaELeErl~ql~~E~q~W 218 (334)
.+++|+.+..+...++.++.-+...-..|
T Consensus 75 l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 75 LEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444433333
No 339
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=23.93 E-value=3.6e+02 Score=21.18 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=35.2
Q ss_pred HHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHH
Q 019869 138 VRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFL--SAIEKGLAKKLQEKDMEIENMN 198 (334)
Q Consensus 138 l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll--~ave~~~~~rLReKe~Eie~~~ 198 (334)
|.+-|+ .|-|.++ +++=.||..|...|+.=..+|- .|+-+.+++-++|+++-.+.+.
T Consensus 9 lL~~lQ---nEWDa~m-LE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~ 67 (70)
T PF08606_consen 9 LLSTLQ---NEWDALM-LENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALA 67 (70)
T ss_pred HHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Confidence 444454 5666654 5566677777777766555553 3556667777777776655443
No 340
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=23.91 E-value=33 Score=40.90 Aligned_cols=45 Identities=22% Similarity=0.566 Sum_probs=32.7
Q ss_pred cccccccccccc---cceEEecCCCcccchhhHhh--------------CCCCCCCcccccce
Q 019869 283 HQMICRACKAKE---ASVLLMPCRHLCLCKDCDVL--------------VAVCPVCQFVKNAS 328 (334)
Q Consensus 283 ~~~~C~iC~~~~---~~vlllPC~HlclC~~C~~~--------------l~~CPvCr~~i~~~ 328 (334)
...+|.||+... +-.+-+-|+|. +=-.|... .-.||+|..+|+-.
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 456899999864 34567899998 55555442 26899999998754
No 341
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=23.87 E-value=1.5e+02 Score=23.54 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019869 195 ENMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 195 e~~~krnaELeErl~ql~~E~q 216 (334)
..+.+.|+.|+++++.+++|-|
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq 24 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQ 24 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888877776655
No 342
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=23.77 E-value=2.8e+02 Score=19.83 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=18.3
Q ss_pred HHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 182 GLAKKLQEKD-MEIENMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 182 ~~~~rLReKe-~Eie~~~krnaELeErl~ql~~E~q 216 (334)
.++++-|+|- +.++.+..+..+|+....+|..+..
T Consensus 14 ~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 14 EAARRSRQRKKQREEELEQEVQELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555533 4455555555555555555544433
No 343
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=23.55 E-value=8.6e+02 Score=25.44 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 145 QKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKG------LAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNW 218 (334)
Q Consensus 145 q~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~------~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~W 218 (334)
-+.|-|+++..++.---.+|+-++..|--.+-..+|.. +-..-|+--+|++.+.|...-|-|..-|-+.|+.+.
T Consensus 368 LreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahL 447 (593)
T KOG4807|consen 368 LREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHL 447 (593)
T ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666655555556666666655544444332 112224445677777777777777776666666543
No 344
>PRK14143 heat shock protein GrpE; Provisional
Probab=23.55 E-value=2.8e+02 Score=26.45 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=12.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 019869 147 EEFDQYIKVQEEYLAKGVQDMKQR 170 (334)
Q Consensus 147 ~EiD~~ir~q~erlR~~lee~rqr 170 (334)
.++.. +..+.+.++..+++.+.+
T Consensus 67 ~~~~~-l~~el~~l~~e~~elkd~ 89 (238)
T PRK14143 67 ARLAQ-LEQELESLKQELEELNSQ 89 (238)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44543 445556666666654433
No 345
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=23.49 E-value=6.1e+02 Score=23.66 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019869 173 ASFLSAIEKGLAK---KLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNL 236 (334)
Q Consensus 173 r~ll~ave~~~~~---rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~L 236 (334)
+.++..+|+...+ ..|+.|.|...+......|++...++-.|..--+...+.--....+|+.++
T Consensus 73 k~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 73 KTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 3444444443332 245566666666677777777777777666666665555544555666665
No 346
>PRK14158 heat shock protein GrpE; Provisional
Probab=23.15 E-value=3.1e+02 Score=25.37 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019869 192 MEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~ 212 (334)
+|.++.+||...=.+.+++..
T Consensus 68 AefeN~RkR~~kE~e~~~~~a 88 (194)
T PRK14158 68 ADLENYRKRVQKEKEELLKYG 88 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444333333333
No 347
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=23.07 E-value=4.5e+02 Score=21.97 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=34.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019869 183 LAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 183 ~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
+-.+|.+-++.|..+.....+|+..+..+..|+...+ .+| ..||..|.+..
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~---~EN----~~Lr~~l~~~~ 56 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLR---IEN----EHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHh
Confidence 3455667788888888888888888888888887432 333 33566666554
No 348
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=23.01 E-value=1.2e+03 Score=27.01 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 193 EIENMNRKNRELIERIKQMAAEAQNWHYRA 222 (334)
Q Consensus 193 Eie~~~krnaELeErl~ql~~E~q~Wq~~A 222 (334)
+++.+.....+++.++.++..+-..|....
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1163)
T COG1196 794 ELEELEEELEEAERRLDALERELESLEQRR 823 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 349
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.01 E-value=2.6e+02 Score=22.20 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=26.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 184 AKKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 184 ~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~ 217 (334)
+.+||.-=+-|+++......+.+.++.+..|+..
T Consensus 3 ~~~Lr~~ieRiErLEeEk~~i~~dikdVyaEAK~ 36 (74)
T PF10073_consen 3 AEQLRQFIERIERLEEEKKAISDDIKDVYAEAKG 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666677777877788888899999888764
No 350
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.98 E-value=4.3e+02 Score=21.68 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 140 TELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 140 ~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~ 213 (334)
..|+.....+|.||+.-..+...++...-+-.-...-...|. .....+|+.+......|++.+.++..
T Consensus 42 ~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei------~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 42 QELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEI------KKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
No 351
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=22.95 E-value=42 Score=25.08 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=13.1
Q ss_pred CCCCCCCcccccceEEE
Q 019869 315 VAVCPVCQFVKNASVLV 331 (334)
Q Consensus 315 l~~CPvCr~~i~~~v~v 331 (334)
+.+|.+|..+|.....|
T Consensus 1 m~~CvVCKqpi~~a~~v 17 (54)
T PF10886_consen 1 MEICVVCKQPIDDALVV 17 (54)
T ss_pred CCeeeeeCCccCcceEE
Confidence 35899999999886444
No 352
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=22.79 E-value=3.6e+02 Score=20.78 Aligned_cols=29 Identities=14% Similarity=0.328 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 191 DMEIENMNRKNRELIERIKQMAAEAQNWH 219 (334)
Q Consensus 191 e~Eie~~~krnaELeErl~ql~~E~q~Wq 219 (334)
++-|+.+..+..+|++....|..+...|+
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~~~ 34 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKTWR 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554
No 353
>PRK14161 heat shock protein GrpE; Provisional
Probab=22.65 E-value=4.4e+02 Score=23.98 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 189 EKDMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 189 eKe~Eie~~~krnaELeErl~ql~~ 213 (334)
..-+|.++.+||...=.+.++....
T Consensus 44 R~~AefeN~rkR~~ke~~~~~~~a~ 68 (178)
T PRK14161 44 RTTAEIDNTRKRLEKARDEAKDYAI 68 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666665544444443333
No 354
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=22.60 E-value=5.8e+02 Score=23.22 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=6.2
Q ss_pred HHHHHhHHHHH
Q 019869 151 QYIKVQEEYLA 161 (334)
Q Consensus 151 ~~ir~q~erlR 161 (334)
.+++++.|+-|
T Consensus 65 ~l~rLeEEqqR 75 (182)
T PF15035_consen 65 ALIRLEEEQQR 75 (182)
T ss_pred HHHHHHHHHHh
Confidence 55566655554
No 355
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.55 E-value=3.7e+02 Score=26.55 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 019869 182 GLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAIS 241 (334)
Q Consensus 182 ~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~ 241 (334)
.|.+++.+.|..++++.|....-+..+..+++--+.-+..+.+.......|+.+.+-+..
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e 74 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLME 74 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH
No 356
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=22.55 E-value=1.5e+02 Score=23.49 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=39.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 019869 183 LAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQ 238 (334)
Q Consensus 183 ~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ 238 (334)
.+++|.=.|.+|+.+...+-.+.|+.-++- +.|...-...+|+++.|-.-|..
T Consensus 17 ~~R~LGlse~~Id~ie~~~~~~~Eq~yqmL---~~W~~~~g~~~At~~~L~~aLr~ 69 (80)
T cd08313 17 FVRRLGLSDNEIERVELDHRRCRDAQYQML---KVWKERGPRPYATLQHLLSVLRD 69 (80)
T ss_pred HHHHcCCCHHHHHHHHHhCCChHHHHHHHH---HHHHHhcCCCcchHHHHHHHHHH
Confidence 567787889999999988888888887775 67988766556666666655543
No 357
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.51 E-value=5.1e+02 Score=22.41 Aligned_cols=83 Identities=13% Similarity=0.182 Sum_probs=48.6
Q ss_pred HHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 138 VRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 138 l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~ 217 (334)
++.--.|--..-=.-|-.|.+++-..|+..| +|...=+..++ .+|-+-.+-.+.+.+...++.+.+.++..+...
T Consensus 33 ~M~vTrr~m~~A~~~v~kql~~vs~~l~~tK-khLsqRId~vd----~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~ 107 (126)
T PF07889_consen 33 LMFVTRRSMSDAVASVSKQLEQVSESLSSTK-KHLSQRIDRVD----DKLDEQKEISKQIKDEVTEVREDVSQIGDDVDS 107 (126)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4443444444444556677777777777765 44433333333 456566666666677777777777777766665
Q ss_pred HHHHHhhh
Q 019869 218 WHYRAKYN 225 (334)
Q Consensus 218 Wq~~A~~n 225 (334)
-+.....-
T Consensus 108 v~~~V~~L 115 (126)
T PF07889_consen 108 VQQMVEGL 115 (126)
T ss_pred HHHHHHHH
Confidence 44444443
No 358
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=22.45 E-value=4.8e+02 Score=22.09 Aligned_cols=85 Identities=20% Similarity=0.271 Sum_probs=53.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHH
Q 019869 153 IKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEA----QNWHYRAKYNESV 228 (334)
Q Consensus 153 ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~----q~Wq~~A~~nEa~ 228 (334)
++...+.+...+.++....-+.|+.-.+. ++.|....+++..+.....+|+..+..+..+. ..|...-..-+..
T Consensus 29 ~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~--~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e 106 (132)
T PF07926_consen 29 LREDLESQAKIAQEAQQKYERELVKHAED--IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKE 106 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34556666666777778888888777664 56666666677777777777777776665543 3566555444444
Q ss_pred HHHHHHHHHHH
Q 019869 229 VNLLKSNLQQA 239 (334)
Q Consensus 229 a~~Lr~~LqQ~ 239 (334)
+..+...++.+
T Consensus 107 ~~~~~~r~~dL 117 (132)
T PF07926_consen 107 LSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 359
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=22.43 E-value=5.1e+02 Score=22.38 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=38.5
Q ss_pred hHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 136 DNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEA 215 (334)
Q Consensus 136 ~~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~ 215 (334)
.++.+++..=..|.+++.+-+..|-. ..++.-.++ +.+++.........++++..+..+.
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~---------~~k~~ae~a-----------~~~L~~~~~~~~~i~e~~~kl~~~~ 82 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYN---------EEKQEAEAA-----------EAELAELKELYAEIEEKIEKLKQDS 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-----------HHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 45777788888888888877654443 222222333 3456666667777777777777765
Q ss_pred H
Q 019869 216 Q 216 (334)
Q Consensus 216 q 216 (334)
.
T Consensus 83 ~ 83 (126)
T PF09403_consen 83 K 83 (126)
T ss_dssp G
T ss_pred c
Confidence 3
No 360
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=22.42 E-value=1.7e+02 Score=32.06 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=38.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHH
Q 019869 149 FDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNR-------KNRELIERIK 209 (334)
Q Consensus 149 iD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~k-------rnaELeErl~ 209 (334)
+=.=+.-+.+.+.++||+.+++|.+.|-+- .+ ...|+++|.+|..+-. ..|-||-|+.
T Consensus 365 F~kRV~~~ia~~~AEIekmK~~Hak~m~k~-k~--~s~lk~AE~~LR~a~~~p~~~G~E~WRlEGrl~ 429 (669)
T PF08549_consen 365 FRKRVAKKIADMNAEIEKMKARHAKRMAKF-KR--NSLLKDAEKELRDAVEDPSETGPEIWRLEGRLD 429 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--ccHHHHHHHHHHhccCCccccCccceeeccccc
Confidence 333445667778888888889998876332 22 3456777777766654 4677777776
No 361
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=22.40 E-value=6.1e+02 Score=23.26 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=13.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~ 212 (334)
+.+++.+..++.....+|+..+.++.
T Consensus 119 ~~~~~~~~~~~e~~i~~Le~ki~el~ 144 (190)
T PF05266_consen 119 IEEKEAELKELESEIKELEMKILELQ 144 (190)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555444
No 362
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=22.33 E-value=31 Score=21.06 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=5.6
Q ss_pred CCCCCCccc
Q 019869 316 AVCPVCQFV 324 (334)
Q Consensus 316 ~~CPvCr~~ 324 (334)
..||.|..+
T Consensus 14 ~fC~~CG~~ 22 (23)
T PF13240_consen 14 KFCPNCGTP 22 (23)
T ss_pred cchhhhCCc
Confidence 566666654
No 363
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.30 E-value=7.4e+02 Score=24.19 Aligned_cols=22 Identities=9% Similarity=0.228 Sum_probs=13.3
Q ss_pred hhhHHHHH-HhHhhHHHHHHHHH
Q 019869 134 LADNVRTE-LDRQKEEFDQYIKV 155 (334)
Q Consensus 134 l~~~l~~~-l~rq~~EiD~~ir~ 155 (334)
+..++... ++.+..+|+.+-..
T Consensus 24 V~a~~~~~~i~~~ds~l~~~~~~ 46 (265)
T COG3883 24 VFAALLSDKIQNQDSKLSELQKE 46 (265)
T ss_pred hhhhhhhhHHHhhHHHHHHHHHH
Confidence 33444444 78888888866543
No 364
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=22.29 E-value=60 Score=35.41 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=10.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Q 019869 185 KKLQEKDMEIENMNRKNRELIERI 208 (334)
Q Consensus 185 ~rLReKe~Eie~~~krnaELeErl 208 (334)
+++.+-.+|||+|.++.+..-+++
T Consensus 371 ~~ia~~~AEIekmK~~Hak~m~k~ 394 (669)
T PF08549_consen 371 KKIADMNAEIEKMKARHAKRMAKF 394 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555554444333333
No 365
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=22.23 E-value=1.2e+02 Score=29.71 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019869 198 NRKNRELIERIKQMAAEAQNWHYRAKY 224 (334)
Q Consensus 198 ~krnaELeErl~ql~~E~q~Wq~~A~~ 224 (334)
.+..++|+|.+++|..|.++|....+.
T Consensus 163 ~~~i~~Lee~I~rLk~E~~~W~~~l~~ 189 (301)
T PF08202_consen 163 EENIAELEEKIKRLKEERQAWAQLLKP 189 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 455788999999999999999988743
No 366
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.19 E-value=7e+02 Score=23.89 Aligned_cols=80 Identities=16% Similarity=0.281 Sum_probs=43.2
Q ss_pred hHHHHHHhHhhHHHHH-HHH------HhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHH
Q 019869 136 DNVRTELDRQKEEFDQ-YIK------VQEEYLAKGVQ--DMKQRHMASFLSAIEKGLAKK--LQEKDMEIENMNRKNREL 204 (334)
Q Consensus 136 ~~l~~~l~rq~~EiD~-~ir------~q~erlR~~le--e~rqrh~r~ll~ave~~~~~r--LReKe~Eie~~~krnaEL 204 (334)
+..++.|+.....+|. |+- .-++-||.-|. |+.|--+-+++..+ +.+| ++.-+.+|+.+.++.
T Consensus 117 ~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~E~l---~~rre~~~kLe~~ie~~~~~v--- 190 (240)
T cd07667 117 GNCSTALEELTEDMTEDFLPVLREYILYSESMKNVLKKRDQVQAEYEAKLEAV---ALRKEERPKVPTDVEKCQDRV--- 190 (240)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---
Confidence 3445555555554433 321 22455665554 55555566665554 3333 555566666666664
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019869 205 IERIKQMAAEAQNWHYR 221 (334)
Q Consensus 205 eErl~ql~~E~q~Wq~~ 221 (334)
+-..+.+..|...|+..
T Consensus 191 e~f~~~~~~E~~~Fe~~ 207 (240)
T cd07667 191 ECFNADLKADMERWQNN 207 (240)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555666777777654
No 367
>PRK14159 heat shock protein GrpE; Provisional
Probab=22.17 E-value=2.6e+02 Score=25.47 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=5.6
Q ss_pred HHhHHHHHHHHHH
Q 019869 154 KVQEEYLAKGVQD 166 (334)
Q Consensus 154 r~q~erlR~~lee 166 (334)
-...+.++..+.+
T Consensus 29 ~~~i~~l~~e~~e 41 (176)
T PRK14159 29 DVEQNKLQKDYDE 41 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 368
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=22.13 E-value=3.7e+02 Score=21.06 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019869 193 EIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 193 Eie~~~krnaELeErl~ql~ 212 (334)
.+.+++.++.+||.|+..|+
T Consensus 58 ~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 58 VLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44455555556666665554
No 369
>PF15456 Uds1: Up-regulated During Septation
Probab=22.05 E-value=5.1e+02 Score=22.23 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=31.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVV 229 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a 229 (334)
-+.+.|+|++...++.-||...+.+++.-...-+.+-.++.+.|
T Consensus 75 ~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rLLeH~Aav 118 (124)
T PF15456_consen 75 SSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRLLEHTAAV 118 (124)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999988888888777765555555555555544
No 370
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.99 E-value=9.1e+02 Score=25.11 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019869 195 ENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 195 e~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
+.+.+...-+.++++.+..+.......-+..+.....|+.+|..+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333333334444444444444444444444444445555554443
No 371
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=21.83 E-value=43 Score=38.17 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=25.3
Q ss_pred cccccccccccccc-------ceEEecCCCcccchhhHh------hCCCCCCCcccccc
Q 019869 282 NHQMICRACKAKEA-------SVLLMPCRHLCLCKDCDV------LVAVCPVCQFVKNA 327 (334)
Q Consensus 282 ~~~~~C~iC~~~~~-------~vlllPC~HlclC~~C~~------~l~~CPvCr~~i~~ 327 (334)
.....|.||+.--. +----.|+|- +=..|-- .-..||+||..|+-
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCcccccccc
Confidence 45678999997211 1111124443 3334432 13899999988763
No 372
>PF13166 AAA_13: AAA domain
Probab=21.81 E-value=1e+03 Score=25.52 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=34.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 185 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 185 ~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
+++.+.+.++..+.+....++..+..+..+...-+......+..++.+...|..+
T Consensus 417 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 417 KEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4445555566666666666666666666665555555554566667777777666
No 373
>PRK14148 heat shock protein GrpE; Provisional
Probab=21.78 E-value=3.2e+02 Score=25.30 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=8.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 019869 148 EFDQYIKVQEEYLAKGVQDMK 168 (334)
Q Consensus 148 EiD~~ir~q~erlR~~lee~r 168 (334)
|++. +....+.++..+++.+
T Consensus 41 e~~~-l~~~l~~l~~e~~elk 60 (195)
T PRK14148 41 QLER-AKDTIKELEDSCDQFK 60 (195)
T ss_pred HHHH-HHHHHHHHHHHHHHHH
Confidence 3444 3344444554444443
No 374
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=21.77 E-value=5.1e+02 Score=22.12 Aligned_cols=40 Identities=5% Similarity=0.126 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019869 191 DMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVN 230 (334)
Q Consensus 191 e~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~ 230 (334)
+.+...+.-...|....+.++..|.++|+.+..+....++
T Consensus 79 ~~~~q~lq~~I~Ek~~eLERl~~E~~sL~kve~eQ~~~i~ 118 (120)
T PF14931_consen 79 EAQQQQLQALIAEKKMELERLRSEYESLQKVEQEQNELIQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555666888999999998888776654
No 375
>PRK14162 heat shock protein GrpE; Provisional
Probab=21.70 E-value=3.3e+02 Score=25.18 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=10.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 019869 147 EEFDQYIKVQEEYLAKGVQDMK 168 (334)
Q Consensus 147 ~EiD~~ir~q~erlR~~lee~r 168 (334)
.|++.+ ....+.+...+++.+
T Consensus 39 ~e~~~l-~~~l~~l~~e~~elk 59 (194)
T PRK14162 39 NPVEDL-EKEIADLKAKNKDLE 59 (194)
T ss_pred hhHHHH-HHHHHHHHHHHHHHH
Confidence 455543 444555655555543
No 376
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=21.69 E-value=3.8e+02 Score=20.59 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019869 160 LAKGVQDMKQRHM--ASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 160 lR~~lee~rqrh~--r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~ 212 (334)
+|..+...|+-|. -+-+.+++..--.- ..|+++.|+.-.|++++.+++
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~~~cD~-----L~iqRmKkKKLAlKDki~~lE 58 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIATGCDA-----LRIQRMKKKKLALKDKITKLE 58 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcH-----HHHHHHHHHHHhHHHHHHHHH
Confidence 4555555556554 33444444322222 357788888777888877765
No 377
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=21.59 E-value=1.3e+03 Score=26.89 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 190 KDMEIENMNRKNRELIERIKQMAAEAQNW 218 (334)
Q Consensus 190 Ke~Eie~~~krnaELeErl~ql~~E~q~W 218 (334)
++++.+.+.++..+++..++++..|-+.|
T Consensus 676 ~~~~~~~~~~~l~~l~~~l~~~~~e~~~~ 704 (1201)
T PF12128_consen 676 KEERKEQIEEQLNELEEELKQLKQELEEL 704 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 378
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=21.59 E-value=4.1e+02 Score=20.94 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=34.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHHHH
Q 019869 182 GLAKKLQEKDMEIENMNRKNRELIERIKQMAAEA--QNWHYRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 182 ~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~--q~Wq~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
+.+..|++-+.|+..+.-...+|.++++++..-. ...+.++..-+..+..|-..-+|++
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888888888888777775432 2233344444444444444434433
No 379
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=21.58 E-value=6.7e+02 Score=23.42 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019869 193 EIENMNRKNRELIERIKQMAAEAQNWHYRAKY 224 (334)
Q Consensus 193 Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~ 224 (334)
|+..-.++..+||.+...|..|+...+.+..+
T Consensus 109 eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~ 140 (195)
T PF10226_consen 109 EVAQYQQKLKELEDKQEELIRENLELKELCLY 140 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 66677777888888888888777766655544
No 380
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=21.56 E-value=8.2e+02 Score=24.49 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=18.4
Q ss_pred HHHHHhHhhHHHHHHHHHhHHHHHH
Q 019869 138 VRTELDRQKEEFDQYIKVQEEYLAK 162 (334)
Q Consensus 138 l~~~l~rq~~EiD~~ir~q~erlR~ 162 (334)
+..+|++-+.|-|+| +..+|+|+.
T Consensus 14 L~~eLe~cq~ErDqy-KlMAEqLqe 37 (319)
T PF09789_consen 14 LSQELEKCQSERDQY-KLMAEQLQE 37 (319)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 456788889999998 455888873
No 381
>PLN02678 seryl-tRNA synthetase
Probab=21.55 E-value=8e+02 Score=25.57 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=7.8
Q ss_pred HHHHHHHhHHH
Q 019869 149 FDQYIKVQEEY 159 (334)
Q Consensus 149 iD~~ir~q~er 159 (334)
||+++.+..++
T Consensus 32 id~il~ld~~~ 42 (448)
T PLN02678 32 VDEVIALDKEW 42 (448)
T ss_pred HHHHHHHHHHH
Confidence 78888777554
No 382
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=21.54 E-value=3.8e+02 Score=26.23 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 198 NRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 198 ~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
..+...||++++-+-.+++.. .+.+..|+..+.|....
T Consensus 226 LdrisrLEdkv~~lk~~n~~L-------~~~l~~l~~~v~e~k~~ 263 (279)
T KOG0837|consen 226 LDRISRLEDKVKTLKIYNRDL-------ASELSKLKEQVAELKQK 263 (279)
T ss_pred HHHHHHHHhhhhhhhhhhhhH-------HHHHHHHHHHHHHHHHH
Confidence 334555666666666555533 33344455555444433
No 383
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.49 E-value=2.2e+02 Score=23.68 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019869 196 NMNRKNRELIERIKQMAAEAQNWHYRAKY 224 (334)
Q Consensus 196 ~~~krnaELeErl~ql~~E~q~Wq~~A~~ 224 (334)
...+.+.+|+..+++|.+|....+..+..
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777788888888766665544
No 384
>PRK14154 heat shock protein GrpE; Provisional
Probab=21.25 E-value=2.9e+02 Score=25.95 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 191 DMEIENMNRKNRELIERIKQMAAE 214 (334)
Q Consensus 191 e~Eie~~~krnaELeErl~ql~~E 214 (334)
.+|.++.+||...-.+.++....+
T Consensus 79 ~ADfeNyRKR~~kE~e~~~~~a~e 102 (208)
T PRK14154 79 QAEMDNLRKRIEREKADIIKFGSK 102 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666655555555544443
No 385
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=21.21 E-value=4.9e+02 Score=21.67 Aligned_cols=16 Identities=25% Similarity=0.545 Sum_probs=9.2
Q ss_pred HHHHHhhHHHHHHHHH
Q 019869 184 AKKLQEKDMEIENMNR 199 (334)
Q Consensus 184 ~~rLReKe~Eie~~~k 199 (334)
..||.+|..|++.+.+
T Consensus 3 ~~ri~eKk~ELe~L~~ 18 (103)
T PF08654_consen 3 QARIAEKKAELEALKQ 18 (103)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666665543
No 386
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.20 E-value=7.2e+02 Score=23.68 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=34.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Q 019869 149 FDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQ-----NWHYR 221 (334)
Q Consensus 149 iD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q-----~Wq~~ 221 (334)
.++-|..+..+|-+.++.+|++.- -.+.+ .|=|+.|+||+...|+..+ ..+.+...|.+ .|+.+
T Consensus 155 fk~av~~~~mklfae~erkRk~~e---~r~~~----eRkr~re~eIeaeek~Kr~--~E~qKnfEEsRd~Rv~sWrnF 223 (250)
T KOG1150|consen 155 FKQAVYKQVMKLFAELERKRKELE---ARANE----ERKRQREEEIEAEEKRKRE--REWQKNFEESRDGRVGSWRNF 223 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHhHHHHHHHHHHHHHH--HHHHHHHHHhcccccchHHHH
Confidence 345566677777777766655432 11222 3556677888877555332 22334444443 46654
No 387
>PRK02224 chromosome segregation protein; Provisional
Probab=21.05 E-value=1.1e+03 Score=25.88 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=9.0
Q ss_pred CCCCCCcccccc
Q 019869 316 AVCPVCQFVKNA 327 (334)
Q Consensus 316 ~~CPvCr~~i~~ 327 (334)
..||+|..++..
T Consensus 452 ~~Cp~C~r~~~~ 463 (880)
T PRK02224 452 GKCPECGQPVEG 463 (880)
T ss_pred ccCCCCCCcCCC
Confidence 678888887754
No 388
>PF05660 DUF807: Coxiella burnetii protein of unknown function (DUF807); InterPro: IPR008525 This family consists of several proteins of unknown function from Coxiella burnetii (the causative agent of a zoonotic disease called Q fever).
Probab=21.02 E-value=44 Score=29.10 Aligned_cols=23 Identities=48% Similarity=0.847 Sum_probs=18.8
Q ss_pred hhhhcCCCCCCCCCCceecCCCCC
Q 019869 30 LQLFGNLPAGCSIDPVNYFGNEHI 53 (334)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~n~~~ 53 (334)
|-+.|..|.|. .+|-.||||-+.
T Consensus 6 l~f~g~~~igp-i~p~syfgn~ga 28 (142)
T PF05660_consen 6 LIFSGQIPIGP-IDPDSYFGNPGA 28 (142)
T ss_pred EEEecCcccCC-cCchhccCCCcc
Confidence 56679999995 559999999874
No 389
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=20.99 E-value=53 Score=28.86 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=26.0
Q ss_pred cccccccccccc---cceEEecCCCcc-----cchhhHhhC
Q 019869 283 HQMICRACKAKE---ASVLLMPCRHLC-----LCKDCDVLV 315 (334)
Q Consensus 283 ~~~~C~iC~~~~---~~vlllPC~Hlc-----lC~~C~~~l 315 (334)
....|.||+++- ..||.++|+=.. +|.+|..+-
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 367899999864 458999998653 799998864
No 390
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.99 E-value=3.8e+02 Score=25.17 Aligned_cols=22 Identities=41% Similarity=0.373 Sum_probs=11.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 019869 181 KGLAKKLQEKDMEIENMNRKNR 202 (334)
Q Consensus 181 ~~~~~rLReKe~Eie~~~krna 202 (334)
.+..+||++|..|+....++..
T Consensus 97 ~~~lkkLq~~qmem~~~Q~elm 118 (201)
T COG1422 97 MKKLKKLQEKQMEMMDDQRELM 118 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666665555544433
No 391
>PRK01343 zinc-binding protein; Provisional
Probab=20.91 E-value=43 Score=25.22 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=4.9
Q ss_pred CCCCCCcccc
Q 019869 316 AVCPVCQFVK 325 (334)
Q Consensus 316 ~~CPvCr~~i 325 (334)
..||+|+.++
T Consensus 10 ~~CP~C~k~~ 19 (57)
T PRK01343 10 RPCPECGKPS 19 (57)
T ss_pred CcCCCCCCcC
Confidence 3455555544
No 392
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.91 E-value=1.4e+03 Score=26.72 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=13.5
Q ss_pred cceecCcc-----cchhhhhcCCCC
Q 019869 19 SFQYQTNA-----SNQLQLFGNLPA 38 (334)
Q Consensus 19 ~~~~~~~~-----~~~~~~~~~~~~ 38 (334)
-|.+++|- +-|+++|-..|+
T Consensus 57 YF~Cd~ncG~FVr~sq~r~lEda~g 81 (1243)
T KOG0971|consen 57 YFECDENCGVFVRSSQVRELEDASG 81 (1243)
T ss_pred eEecCCCcceEeehhhhHHhhcccC
Confidence 47777775 347888876543
No 393
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=20.88 E-value=48 Score=24.57 Aligned_cols=16 Identities=25% Similarity=0.644 Sum_probs=12.4
Q ss_pred CCCCCCcccccceEEE
Q 019869 316 AVCPVCQFVKNASVLV 331 (334)
Q Consensus 316 ~~CPvCr~~i~~~v~v 331 (334)
..|++|..||.+.+-|
T Consensus 2 ~iCvvCK~Pi~~al~v 17 (53)
T PHA02610 2 KICVVCKQPIEKALVV 17 (53)
T ss_pred ceeeeeCCchhhceEE
Confidence 5799999999776554
No 394
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=20.84 E-value=4.8e+02 Score=27.59 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 019869 180 EKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAIS 241 (334)
Q Consensus 180 e~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~ 241 (334)
+..|..-||+..+||..+.+.|.+...++.+|.-|--+||.+-.- ...|-.+++|++.
T Consensus 403 dDEvlaeLR~lqaeLk~vS~~N~k~k~~Ll~la~eE~a~qe~~q~----lddlDkqI~qaYv 460 (516)
T KOG4191|consen 403 DDEVLAELRKLQAELKAVSAHNRKKKHDLLRLAPEEMARQEFQQV----LDDLDKQIEQAYV 460 (516)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 445666688888888888888888888888888888888876543 4667778888765
No 395
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=20.78 E-value=7.3e+02 Score=23.52 Aligned_cols=8 Identities=38% Similarity=0.430 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 019869 229 VNLLKSNL 236 (334)
Q Consensus 229 a~~Lr~~L 236 (334)
+..|+.+.
T Consensus 181 ~~al~Kq~ 188 (216)
T KOG1962|consen 181 VDALKKQS 188 (216)
T ss_pred HHHHHHHH
Confidence 33344333
No 396
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.75 E-value=1.2e+03 Score=26.02 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 019869 157 EEYLAKGVQD 166 (334)
Q Consensus 157 ~erlR~~lee 166 (334)
.++|=..|++
T Consensus 518 ~~~li~~l~~ 527 (782)
T PRK00409 518 LNELIASLEE 527 (782)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 397
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=20.74 E-value=6.7e+02 Score=23.08 Aligned_cols=93 Identities=10% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 019869 149 FDQYIKVQEEYLAK------------GVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIEN-MNRKNRELIERIKQMAAEA 215 (334)
Q Consensus 149 iD~~ir~q~erlR~------------~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~-~~krnaELeErl~ql~~E~ 215 (334)
||++|+-..+.|.. ...+++...+...+...+..+-.-|..-++++.+ +..+-...++.+..+..+.
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~ 108 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALEREL 108 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHh
Q 019869 216 QNWHYRAKYNESVVNLLKSNLQQAIS 241 (334)
Q Consensus 216 q~Wq~~A~~nEa~a~~Lr~~LqQ~~~ 241 (334)
..-+..+..-+..+..|+.+++.+..
T Consensus 109 ~~~~~~v~~l~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 109 AAVEETLAKLQEDIAKLQAKLAEARA 134 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 398
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=20.71 E-value=3.8e+02 Score=20.31 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019869 198 NRKNRELIERIKQMAAE 214 (334)
Q Consensus 198 ~krnaELeErl~ql~~E 214 (334)
.++|.+|+..+..|..|
T Consensus 38 E~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 38 EKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 399
>PRK10963 hypothetical protein; Provisional
Probab=20.66 E-value=3.5e+02 Score=25.11 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019869 194 IENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 194 ie~~~krnaELeErl~ql~~ 213 (334)
+++++.||.+||.++.+|..
T Consensus 46 ~~~LR~r~~~Le~~l~~Li~ 65 (223)
T PRK10963 46 MARQRNHIHVLEEEMTLLME 65 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555553
No 400
>PLN02436 cellulose synthase A
Probab=20.59 E-value=66 Score=36.98 Aligned_cols=44 Identities=18% Similarity=0.533 Sum_probs=32.2
Q ss_pred cccccccccccc----cceEEecCCCc--ccchhhHhh-----CCCCCCCccccc
Q 019869 283 HQMICRACKAKE----ASVLLMPCRHL--CLCKDCDVL-----VAVCPVCQFVKN 326 (334)
Q Consensus 283 ~~~~C~iC~~~~----~~vlllPC~Hl--clC~~C~~~-----l~~CPvCr~~i~ 326 (334)
....|.||.+.- -.=+|+.|... .+|..|..- -+.||-|++...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 345899999862 23377888643 389999863 489999998764
No 401
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.56 E-value=5.6e+02 Score=22.15 Aligned_cols=61 Identities=10% Similarity=0.260 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019869 177 SAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQ 237 (334)
Q Consensus 177 ~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~Lq 237 (334)
++..+...+||-.-+..++.........++.+..+......-+....+-..++..|...|.
T Consensus 60 ~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 60 SSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344433333333333333333333333333333333333344444444444443
No 402
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=20.53 E-value=5.6e+02 Score=27.64 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=21.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 019869 153 IKVQEEYLAKGVQDMKQRHMASF---LSAIEKGLA 184 (334)
Q Consensus 153 ir~q~erlR~~lee~rqrh~r~l---l~ave~~~~ 184 (334)
+..-+++||..+++..+.+.+.| +..++..++
T Consensus 458 l~a~t~kL~~E~e~~q~~~~~~l~~~~~~~~~em~ 492 (588)
T KOG3612|consen 458 LVAATEKLRQEFEELQQTSRRELPVPLRNFELEMA 492 (588)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHH
Confidence 34447888888888777777777 666665433
No 403
>PRK14151 heat shock protein GrpE; Provisional
Probab=20.44 E-value=3.3e+02 Score=24.69 Aligned_cols=17 Identities=18% Similarity=0.511 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019869 192 MEIENMNRKNRELIERI 208 (334)
Q Consensus 192 ~Eie~~~krnaELeErl 208 (334)
+|.++.+||...=.+.+
T Consensus 48 Ae~eN~rkR~~kE~e~~ 64 (176)
T PRK14151 48 ADLQNVRRRAEQDVEKA 64 (176)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444333333
No 404
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.37 E-value=7.4e+02 Score=23.46 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 198 NRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 198 ~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
..-...||.-++++..|...-+..+........-|+.+++++...
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334555555555555555554444444555666666666543
No 405
>PRK14153 heat shock protein GrpE; Provisional
Probab=20.33 E-value=3.7e+02 Score=24.90 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=15.2
Q ss_pred HHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019869 138 VRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRH 171 (334)
Q Consensus 138 l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh 171 (334)
-+-+|. ...|+ --+....+.+...+++.+.+.
T Consensus 25 ~~~~~~-~~~~~-~~~~~ei~~l~~e~~elkd~~ 56 (194)
T PRK14153 25 EAEELK-EEPED-STADSETEKCREEIESLKEQL 56 (194)
T ss_pred HHHHHh-hhhhc-ccchHHHHHHHHHHHHHHHHH
Confidence 444444 33332 233445556666666554333
No 406
>PHA00727 hypothetical protein
Probab=20.28 E-value=7e+02 Score=23.63 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=34.4
Q ss_pred HHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 154 KVQEEYLAK--GVQDMKQRHMASFLSAIEKGLAKKL------QEKDMEIENMNRKNRELIERIKQMAAEA 215 (334)
Q Consensus 154 r~q~erlR~--~lee~rqrh~r~ll~ave~~~~~rL------ReKe~Eie~~~krnaELeErl~ql~~E~ 215 (334)
..-.|.||. .++|.||++-.+-....+-.+.+|| ||-|--.+.-+...+||..+-+....|.
T Consensus 8 s~~eeelrkaqsleelkqkyee~qkqi~dgk~lkrlykvyekrefelk~~qf~qlkael~kkkkk~kkek 77 (278)
T PHA00727 8 SAWEEELRKAQSLEELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEK 77 (278)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333444543 3566666666555555666666665 3333334444555666766666666554
No 407
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.07 E-value=9e+02 Score=25.15 Aligned_cols=102 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred CCCcccccccccccccccccCCCCCCCCCchhhhhhhHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 100 VSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAI 179 (334)
Q Consensus 100 vstglrls~~~~~~~s~~~s~s~~~~~~~~~~~~l~~~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~av 179 (334)
++|----+-.+....+....-|.+..++..-+-.+.+.|... -.|.|||--.|.|.-++|...+ +.+
T Consensus 87 ~pt~~aa~k~~~~k~~~~~tqsdsaaaaaarid~~ee~l~~~------------~aq~erlvgeiaenerqhavem-ael 153 (637)
T KOG4421|consen 87 IPTHEAAKKKDKDKGGRRGTQSDSAAAAAARIDAAEEALIFE------------EAQKERLVGEIAENERQHAVEM-AEL 153 (637)
T ss_pred CCCCccccccccccCCCCCCCCCcccccccccchHHHHHHHH------------HHHhhHHHHHHHhhhHhhHHHH-HHH
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 180 EKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAE 214 (334)
Q Consensus 180 e~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E 214 (334)
...+++.+|..+.|.+++.-+...----.+-|+.|
T Consensus 154 sekia~emr~lede~~r~~mrtkaaavatkplede 188 (637)
T KOG4421|consen 154 SEKIADEMRDLEDETERIAMRTKAAAVATKPLEDE 188 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchhH
No 408
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.06 E-value=9.4e+02 Score=25.01 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=13.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 185 KKLQEKDMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 185 ~rLReKe~Eie~~~krnaELeErl~ql~~ 213 (334)
.++++...++..+.++..+|++++..+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555444443
Done!