Query 019869
Match_columns 334
No_of_seqs 262 out of 1156
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 08:19:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.4 1.2E-13 4.1E-18 104.5 4.3 52 283-334 14-65 (68)
2 2vje_B MDM4 protein; proto-onc 99.3 2.4E-13 8.2E-18 101.1 2.6 52 283-334 6-63 (63)
3 2yho_A E3 ubiquitin-protein li 99.3 5.4E-13 1.9E-17 103.6 2.9 54 281-334 15-68 (79)
4 4ic3_A E3 ubiquitin-protein li 99.3 7.4E-13 2.5E-17 101.1 3.3 54 281-334 21-74 (74)
5 2vje_A E3 ubiquitin-protein li 99.3 5.6E-13 1.9E-17 99.4 1.7 52 283-334 7-64 (64)
6 2ecg_A Baculoviral IAP repeat- 99.3 5E-13 1.7E-17 102.1 0.1 54 281-334 22-75 (75)
7 3t6p_A Baculoviral IAP repeat- 99.0 1.1E-10 3.7E-15 113.7 3.3 54 281-334 292-345 (345)
8 4ayc_A E3 ubiquitin-protein li 98.5 6.3E-07 2.2E-11 75.5 10.6 45 284-329 53-101 (138)
9 2d8t_A Dactylidin, ring finger 98.4 2.5E-07 8.6E-12 69.0 4.8 44 283-327 14-61 (71)
10 2ecn_A Ring finger protein 141 98.4 7.4E-08 2.5E-12 71.5 1.1 50 281-332 12-65 (70)
11 2csy_A Zinc finger protein 183 98.4 2.8E-07 9.5E-12 70.4 4.1 46 282-328 13-62 (81)
12 2ysl_A Tripartite motif-contai 98.3 3.1E-07 1E-11 68.4 4.2 46 281-327 17-69 (73)
13 2egp_A Tripartite motif-contai 98.3 2.7E-07 9.4E-12 69.5 3.6 46 280-326 8-64 (79)
14 1chc_A Equine herpes virus-1 r 98.3 2.1E-07 7.3E-12 68.4 2.4 49 283-332 4-57 (68)
15 2ea6_A Ring finger protein 4; 98.3 4.5E-07 1.5E-11 66.4 3.2 46 281-327 12-68 (69)
16 2ct2_A Tripartite motif protei 98.2 6.9E-07 2.3E-11 68.5 4.3 46 280-326 11-67 (88)
17 2djb_A Polycomb group ring fin 98.2 8.3E-07 2.8E-11 66.4 4.4 48 279-327 10-62 (72)
18 2xeu_A Ring finger protein 4; 98.2 4E-07 1.4E-11 65.7 2.2 49 284-333 3-64 (64)
19 2ecw_A Tripartite motif-contai 98.2 1.2E-06 4.2E-11 66.3 4.9 46 281-327 16-71 (85)
20 2ecv_A Tripartite motif-contai 98.2 9.7E-07 3.3E-11 66.9 3.7 46 281-327 16-71 (85)
21 2ecm_A Ring finger and CHY zin 98.2 8.1E-07 2.8E-11 62.5 3.1 44 283-327 4-55 (55)
22 2ect_A Ring finger protein 126 98.2 1.1E-06 3.9E-11 66.3 3.9 45 282-327 13-64 (78)
23 2kiz_A E3 ubiquitin-protein li 98.2 1E-06 3.6E-11 65.0 3.6 46 282-328 12-64 (69)
24 2y1n_A E3 ubiquitin-protein li 98.1 1.1E-06 3.6E-11 86.9 3.8 49 284-333 332-385 (389)
25 1iym_A EL5; ring-H2 finger, ub 98.1 1.7E-06 5.9E-11 60.9 3.7 43 283-326 4-54 (55)
26 3ng2_A RNF4, snurf, ring finge 98.1 4.7E-07 1.6E-11 66.9 0.7 44 283-327 9-63 (71)
27 2yur_A Retinoblastoma-binding 98.1 1.9E-06 6.6E-11 64.9 4.1 47 279-326 10-63 (74)
28 2ep4_A Ring finger protein 24; 98.1 2E-06 6.7E-11 64.3 4.1 48 281-329 12-66 (74)
29 2ecy_A TNF receptor-associated 98.1 1.8E-06 6E-11 63.4 3.4 46 281-327 12-62 (66)
30 3ztg_A E3 ubiquitin-protein li 98.0 2.6E-06 8.8E-11 66.3 3.7 45 280-325 9-60 (92)
31 1bor_A Transcription factor PM 98.0 1.2E-06 4.2E-11 62.8 1.7 43 283-326 5-48 (56)
32 2ecj_A Tripartite motif-contai 98.0 2.9E-06 9.9E-11 60.1 3.2 41 280-321 11-58 (58)
33 2l0b_A E3 ubiquitin-protein li 98.0 2.4E-06 8.1E-11 67.0 2.8 45 282-327 38-89 (91)
34 1g25_A CDK-activating kinase a 98.0 2.4E-06 8.2E-11 62.5 1.9 42 284-326 3-54 (65)
35 1e4u_A Transcriptional repress 98.0 2.6E-06 8.9E-11 65.8 2.2 47 281-328 8-63 (78)
36 1x4j_A Ring finger protein 38; 98.0 3.3E-06 1.1E-10 63.4 2.7 44 283-327 22-72 (75)
37 3fl2_A E3 ubiquitin-protein li 97.9 2.7E-06 9.1E-11 70.0 1.8 45 282-327 50-99 (124)
38 3l11_A E3 ubiquitin-protein li 97.9 4.8E-06 1.6E-10 67.5 3.1 45 281-326 12-61 (115)
39 2ysj_A Tripartite motif-contai 97.8 1E-05 3.6E-10 58.5 3.5 40 281-321 17-63 (63)
40 1t1h_A Gspef-atpub14, armadill 97.8 7.4E-06 2.5E-10 61.7 2.8 46 281-327 5-55 (78)
41 3lrq_A E3 ubiquitin-protein li 97.8 4.4E-06 1.5E-10 66.6 1.5 45 281-326 19-69 (100)
42 2ckl_A Polycomb group ring fin 97.8 6E-06 2E-10 66.3 2.3 46 281-327 12-62 (108)
43 1jm7_A BRCA1, breast cancer ty 97.8 3.5E-06 1.2E-10 67.5 0.8 45 282-327 19-70 (112)
44 2y43_A E3 ubiquitin-protein li 97.8 4.2E-06 1.5E-10 66.1 1.2 46 281-327 19-69 (99)
45 2ckl_B Ubiquitin ligase protei 97.8 6.9E-06 2.3E-10 70.8 2.4 46 280-326 50-101 (165)
46 1z6u_A NP95-like ring finger p 97.8 5.6E-06 1.9E-10 71.1 1.7 44 283-327 77-125 (150)
47 3hct_A TNF receptor-associated 97.7 1.6E-05 5.5E-10 65.0 3.1 46 281-327 15-65 (118)
48 1jm7_B BARD1, BRCA1-associated 97.7 7.5E-06 2.6E-10 66.8 0.8 45 281-326 19-66 (117)
49 1v87_A Deltex protein 2; ring- 97.6 1.6E-05 5.6E-10 64.0 1.7 41 285-326 26-93 (114)
50 1rmd_A RAG1; V(D)J recombinati 97.6 1.7E-05 5.8E-10 64.4 1.2 46 281-327 20-70 (116)
51 2f42_A STIP1 homology and U-bo 97.6 0.00019 6.5E-09 63.8 8.0 45 282-327 104-153 (179)
52 4ap4_A E3 ubiquitin ligase RNF 97.5 3.1E-05 1.1E-09 63.0 1.8 44 283-327 6-60 (133)
53 4ap4_A E3 ubiquitin ligase RNF 97.5 5.5E-05 1.9E-09 61.5 3.2 50 283-333 71-133 (133)
54 2ecl_A Ring-box protein 2; RNF 97.4 0.0001 3.5E-09 56.6 3.2 30 297-327 43-76 (81)
55 3knv_A TNF receptor-associated 97.2 4.2E-05 1.4E-09 65.0 -0.3 44 281-325 28-76 (141)
56 3hcs_A TNF receptor-associated 97.2 0.00017 5.8E-09 62.2 3.1 46 281-327 15-65 (170)
57 2kr4_A Ubiquitin conjugation f 97.1 0.00035 1.2E-08 54.2 3.8 46 281-327 11-60 (85)
58 2c2l_A CHIP, carboxy terminus 97.0 0.00027 9.3E-09 64.3 3.0 44 282-326 206-254 (281)
59 2kre_A Ubiquitin conjugation f 97.0 0.00039 1.3E-08 55.8 3.6 47 280-327 25-75 (100)
60 1wgm_A Ubiquitin conjugation f 97.0 0.00053 1.8E-08 54.8 3.7 46 281-327 19-69 (98)
61 3dpl_R Ring-box protein 1; ubi 96.9 0.0006 2.1E-08 55.4 3.4 30 296-326 67-100 (106)
62 4a0k_B E3 ubiquitin-protein li 96.3 0.00068 2.3E-08 56.3 0.0 40 285-325 49-110 (117)
63 2d8s_A Cellular modulator of i 96.2 0.0037 1.3E-07 48.2 4.0 44 283-327 14-70 (80)
64 2yu4_A E3 SUMO-protein ligase 96.0 0.0037 1.3E-07 49.1 3.0 42 282-324 5-59 (94)
65 3vk6_A E3 ubiquitin-protein li 95.9 0.0072 2.5E-07 49.0 4.2 45 286-331 3-53 (101)
66 1wim_A KIAA0161 protein; ring 95.5 0.003 1E-07 49.2 0.6 41 283-324 4-61 (94)
67 2v71_A Nuclear distribution pr 95.0 0.54 1.8E-05 42.0 13.9 75 154-240 23-101 (189)
68 3htk_C E3 SUMO-protein ligase 94.4 0.014 4.8E-07 54.9 2.0 45 281-326 178-231 (267)
69 2oqq_A Transcription factor HY 92.8 0.33 1.1E-05 33.2 6.1 34 189-222 7-40 (42)
70 2bay_A PRE-mRNA splicing facto 89.7 0.15 5.3E-06 36.9 2.2 42 284-326 3-49 (61)
71 1vyx_A ORF K3, K3RING; zinc-bi 89.4 0.2 6.8E-06 36.3 2.6 44 283-326 5-58 (60)
72 3oja_B Anopheles plasmodium-re 87.7 12 0.00041 37.2 15.2 63 174-236 505-567 (597)
73 3oja_B Anopheles plasmodium-re 86.3 12 0.00041 37.2 14.2 71 172-242 507-580 (597)
74 4etp_A Kinesin-like protein KA 85.2 2.2 7.4E-05 41.9 8.0 59 185-243 3-61 (403)
75 1ci6_A Transcription factor AT 83.9 3.2 0.00011 30.4 6.5 35 188-222 26-60 (63)
76 2ko5_A Ring finger protein Z; 83.4 0.34 1.2E-05 38.9 1.1 49 281-331 25-77 (99)
77 3mq9_A Bone marrow stromal ant 83.4 9.1 0.00031 37.2 11.6 20 221-240 444-463 (471)
78 3o0z_A RHO-associated protein 80.6 28 0.00097 30.3 14.8 34 136-169 5-41 (168)
79 3iv1_A Tumor susceptibility ge 78.9 20 0.00068 27.5 10.0 32 174-205 3-38 (78)
80 1a93_B MAX protein, coiled coi 78.7 2.9 9.9E-05 27.4 4.0 26 187-212 9-34 (34)
81 1dip_A Delta-sleep-inducing pe 78.0 1.6 5.5E-05 33.4 3.1 33 192-224 15-47 (78)
82 3ghg_A Fibrinogen alpha chain; 77.3 27 0.00092 35.7 12.6 24 142-165 76-99 (562)
83 2q6q_A Spindle POLE BODY compo 76.8 14 0.00048 27.8 7.9 52 183-234 8-59 (74)
84 2l5g_B Putative uncharacterize 76.7 6.5 0.00022 26.8 5.5 31 185-215 9-39 (42)
85 3s9g_A Protein hexim1; cyclin 74.9 29 0.00098 27.9 9.7 31 184-221 64-94 (104)
86 2jee_A YIIU; FTSZ, septum, coi 74.9 18 0.00061 28.0 8.3 24 201-224 50-73 (81)
87 3ghg_A Fibrinogen alpha chain; 74.3 36 0.0012 34.7 12.6 98 137-239 50-150 (562)
88 1t6f_A Geminin; coiled-coil, c 73.9 3 0.0001 27.6 3.1 21 186-206 15-35 (37)
89 2v66_B Nuclear distribution pr 73.1 36 0.0012 27.7 13.7 85 153-242 8-92 (111)
90 2v71_A Nuclear distribution pr 73.0 50 0.0017 29.2 17.1 57 187-243 90-146 (189)
91 2v66_B Nuclear distribution pr 72.9 8.8 0.0003 31.4 6.5 43 198-240 2-48 (111)
92 1wlq_A Geminin; coiled-coil; 2 71.2 21 0.00071 27.8 7.9 48 160-208 21-68 (83)
93 2wvr_A Geminin; DNA replicatio 70.8 20 0.00068 32.3 8.8 57 158-229 96-152 (209)
94 3na7_A HP0958; flagellar bioge 70.6 61 0.0021 29.2 14.2 50 187-236 92-141 (256)
95 1jnm_A Proto-oncogene C-JUN; B 70.1 20 0.00067 25.8 7.3 25 191-215 28-52 (62)
96 3oja_A Leucine-rich immune mol 69.4 62 0.0021 31.3 13.1 53 188-240 424-476 (487)
97 1hjb_A Ccaat/enhancer binding 69.2 38 0.0013 26.3 9.2 30 192-221 43-72 (87)
98 2akf_A Coronin-1A; coiled coil 69.0 11 0.00039 23.8 4.8 28 190-217 4-31 (32)
99 1deq_A Fibrinogen (alpha chain 68.2 94 0.0032 30.4 13.6 68 140-208 77-157 (390)
100 3nmd_A CGMP dependent protein 67.4 16 0.00053 27.7 6.3 32 187-218 35-66 (72)
101 1ci6_A Transcription factor AT 67.2 31 0.001 25.0 7.8 49 182-236 12-60 (63)
102 1deq_A Fibrinogen (alpha chain 65.3 84 0.0029 30.8 12.6 31 142-172 54-84 (390)
103 1gd2_E Transcription factor PA 64.8 37 0.0013 25.4 8.0 28 190-217 27-54 (70)
104 1uii_A Geminin; human, DNA rep 63.0 51 0.0017 25.6 9.1 50 158-208 27-76 (83)
105 2ct0_A Non-SMC element 1 homol 62.8 12 0.00042 28.0 5.1 44 283-327 14-64 (74)
106 1jnm_A Proto-oncogene C-JUN; B 62.7 18 0.00061 26.0 5.8 36 198-233 21-56 (62)
107 3k1l_B Fancl; UBC, ring, RWD, 61.9 2.1 7.2E-05 41.9 0.7 45 283-328 307-374 (381)
108 1wle_A Seryl-tRNA synthetase; 61.7 78 0.0027 31.9 12.2 74 136-214 51-138 (501)
109 1ez3_A Syntaxin-1A; three heli 61.3 37 0.0013 26.9 8.1 84 155-241 19-109 (127)
110 1kd8_A GABH AIV, GCN4 acid bas 60.7 11 0.00038 24.8 3.8 29 186-214 2-30 (36)
111 3i00_A HIP-I, huntingtin-inter 60.3 30 0.001 28.4 7.4 11 230-240 71-81 (120)
112 1hjb_A Ccaat/enhancer binding 60.1 36 0.0012 26.4 7.5 44 196-239 33-76 (87)
113 3m91_A Proteasome-associated A 59.9 39 0.0013 23.8 6.9 31 184-214 8-38 (51)
114 3mq7_A Bone marrow stromal ant 59.7 52 0.0018 27.1 8.6 81 134-216 13-102 (121)
115 2zxx_A Geminin; coiled-coil, c 59.6 57 0.002 25.0 8.8 25 185-209 41-65 (79)
116 2jun_A Midline-1; B-BOX, TRIM, 59.6 2.8 9.5E-05 32.3 1.0 30 284-314 3-35 (101)
117 1t3j_A Mitofusin 1; coiled coi 59.4 45 0.0015 26.5 8.0 40 188-238 50-89 (96)
118 2wt7_A Proto-oncogene protein 59.1 47 0.0016 23.9 9.1 35 188-222 26-60 (63)
119 3hnw_A Uncharacterized protein 58.5 80 0.0027 26.3 10.1 29 187-215 105-133 (138)
120 1kd8_B GABH BLL, GCN4 acid bas 57.1 12 0.00043 24.6 3.5 27 186-212 2-28 (36)
121 2dfs_A Myosin-5A; myosin-V, in 56.9 1.2E+02 0.0042 33.2 13.7 94 141-239 946-1042(1080)
122 1gd2_E Transcription factor PA 56.2 60 0.0021 24.2 7.9 46 164-217 23-68 (70)
123 1x4t_A Hypothetical protein LO 55.8 43 0.0015 26.5 7.2 26 186-211 53-78 (92)
124 3vkg_A Dynein heavy chain, cyt 55.6 1.4E+02 0.0049 36.8 14.8 6 60-65 1792-1797(3245)
125 3nmd_A CGMP dependent protein 55.5 26 0.00089 26.5 5.7 22 188-209 29-50 (72)
126 3mq7_A Bone marrow stromal ant 55.2 88 0.003 25.8 13.6 27 211-237 76-102 (121)
127 2b5u_A Colicin E3; high resolu 55.1 1.6E+02 0.0055 29.9 12.9 55 187-241 351-416 (551)
128 1fmh_A General control protein 54.6 23 0.00078 22.3 4.3 27 189-215 5-31 (33)
129 1j1d_C Troponin I, TNI; THIN f 54.2 96 0.0033 25.9 11.8 43 197-239 63-105 (133)
130 1t2k_D Cyclic-AMP-dependent tr 51.0 63 0.0022 22.9 8.1 33 189-221 26-58 (61)
131 1gu4_A CAAT/enhancer binding p 51.0 36 0.0012 25.9 5.9 29 192-220 43-71 (78)
132 2dq0_A Seryl-tRNA synthetase; 50.0 1.9E+02 0.0066 28.5 12.7 77 149-243 30-106 (455)
133 3s9g_A Protein hexim1; cyclin 49.7 99 0.0034 24.8 8.7 20 198-217 64-83 (104)
134 1t2k_D Cyclic-AMP-dependent tr 49.6 66 0.0023 22.8 9.6 24 201-224 24-47 (61)
135 3m48_A General control protein 46.8 26 0.0009 22.6 3.8 26 187-212 2-27 (33)
136 2wt7_A Proto-oncogene protein 46.4 78 0.0027 22.6 8.4 35 199-233 23-57 (63)
137 3mq9_A Bone marrow stromal ant 46.2 2.1E+02 0.007 27.4 13.1 26 146-171 395-420 (471)
138 1d7m_A Cortexillin I; coiled-c 46.2 1.1E+02 0.0037 24.2 10.1 10 203-212 71-80 (101)
139 3vkg_A Dynein heavy chain, cyt 45.9 2.7E+02 0.0091 34.6 15.0 13 201-213 2037-2049(3245)
140 3a7p_A Autophagy protein 16; c 45.8 87 0.003 26.8 8.1 18 198-215 109-126 (152)
141 1s94_A S-syntaxin; three helix 45.7 1.1E+02 0.0039 25.7 9.1 85 155-241 50-140 (180)
142 1gu4_A CAAT/enhancer binding p 45.6 97 0.0033 23.5 8.4 34 196-229 33-66 (78)
143 3vem_A Helicase protein MOM1; 45.0 1.3E+02 0.0043 24.7 8.9 28 132-159 31-58 (115)
144 1j1e_C Troponin I, TNI; THIN f 45.0 1.6E+02 0.0055 25.8 11.8 43 197-239 63-105 (180)
145 3u06_A Protein claret segregat 44.6 68 0.0023 31.4 8.4 54 189-242 7-60 (412)
146 3na7_A HP0958; flagellar bioge 41.9 1.9E+02 0.0066 25.8 12.9 42 171-213 91-132 (256)
147 3vem_A Helicase protein MOM1; 41.7 1.4E+02 0.0049 24.3 10.8 41 154-202 38-78 (115)
148 1uo4_A General control protein 40.0 37 0.0013 22.1 3.7 27 186-212 2-28 (34)
149 2hy6_A General control protein 39.5 38 0.0013 22.0 3.7 27 186-212 2-28 (34)
150 1i84_S Smooth muscle myosin he 39.3 1.4E+02 0.0048 32.9 10.7 26 189-214 910-935 (1184)
151 3u1c_A Tropomyosin alpha-1 cha 39.2 1.4E+02 0.0047 23.4 13.5 54 186-239 38-98 (101)
152 3lay_A Zinc resistance-associa 39.2 69 0.0024 27.8 6.7 31 145-176 72-105 (175)
153 2yy0_A C-MYC-binding protein; 39.1 60 0.002 22.8 5.1 26 192-217 19-44 (53)
154 2fiy_A Protein FDHE homolog; F 38.7 13 0.00045 35.2 2.1 43 283-325 181-232 (309)
155 2wq1_A General control protein 38.4 45 0.0015 21.5 3.9 25 187-211 2-26 (33)
156 2i1j_A Moesin; FERM, coiled-co 37.8 37 0.0013 34.6 5.5 91 137-236 275-372 (575)
157 2oxj_A Hybrid alpha/beta pepti 36.9 48 0.0017 21.5 3.9 24 188-211 4-27 (34)
158 3c3g_A Alpha/beta peptide with 36.3 51 0.0017 21.3 3.9 25 187-211 2-26 (33)
159 3i00_A HIP-I, huntingtin-inter 35.4 1.8E+02 0.0062 23.7 10.3 65 147-217 15-79 (120)
160 3qne_A Seryl-tRNA synthetase, 35.2 2.7E+02 0.0093 27.8 11.2 61 148-214 31-93 (485)
161 3ni0_A Bone marrow stromal ant 35.1 1.7E+02 0.0058 23.2 12.8 55 186-240 33-87 (99)
162 4egx_A Kinesin-like protein KI 35.0 1.1E+02 0.0037 26.5 7.3 28 182-212 9-36 (184)
163 1zxa_A CGMP-dependent protein 34.9 59 0.002 24.2 4.7 20 183-202 16-35 (67)
164 3a7p_A Autophagy protein 16; c 34.4 2.2E+02 0.0075 24.3 12.4 8 138-145 59-66 (152)
165 3c3f_A Alpha/beta peptide with 33.3 60 0.0021 21.0 3.9 25 187-211 3-27 (34)
166 1ses_A Seryl-tRNA synthetase; 33.2 2.5E+02 0.0084 27.3 10.4 60 149-214 27-86 (421)
167 3ghg_C Fibrinogen gamma chain; 33.0 3.6E+02 0.012 26.5 11.7 104 137-242 24-134 (411)
168 2dgc_A Protein (GCN4); basic d 32.8 1.4E+02 0.0047 21.5 6.7 17 200-216 31-47 (63)
169 3u59_A Tropomyosin beta chain; 32.8 1.7E+02 0.0059 22.6 13.5 52 188-239 40-98 (101)
170 2wvr_A Geminin; DNA replicatio 32.7 2.7E+02 0.0093 24.9 9.8 52 151-211 97-148 (209)
171 3pwf_A Rubrerythrin; non heme 32.4 16 0.00056 31.5 1.5 17 315-331 153-169 (170)
172 3efg_A Protein SLYX homolog; x 31.8 1.6E+02 0.0056 22.1 7.3 44 200-243 15-58 (78)
173 1ytz_T Troponin T; muscle, THI 31.6 1E+02 0.0034 24.8 6.0 43 197-239 47-89 (107)
174 3hd7_B Syntaxin-1A; membrane p 30.9 1.9E+02 0.0067 22.7 8.0 53 183-242 12-64 (109)
175 2r2v_A GCN4 leucine zipper; co 30.6 71 0.0024 20.7 3.9 27 186-212 2-28 (34)
176 3cvf_A Homer-3, homer protein 30.0 1.8E+02 0.0063 22.1 7.5 24 193-216 14-37 (79)
177 1z60_A TFIIH basal transcripti 29.8 26 0.00088 25.4 2.0 37 285-322 16-59 (59)
178 1yk4_A Rubredoxin, RD; electro 29.8 24 0.00082 24.8 1.8 14 317-330 37-50 (52)
179 1e8j_A Rubredoxin; iron-sulfur 29.1 22 0.00075 25.0 1.5 13 317-329 38-50 (52)
180 1ytz_I Troponin I; muscle, THI 29.1 2.9E+02 0.01 24.2 9.3 43 197-239 60-102 (182)
181 4rxn_A Rubredoxin; electron tr 28.7 21 0.00073 25.4 1.3 14 317-330 38-51 (54)
182 3cve_A Homer protein homolog 1 28.6 1.9E+02 0.0064 21.7 7.9 24 193-216 8-31 (72)
183 2v3b_B Rubredoxin 2, rubredoxi 28.4 24 0.00082 25.1 1.6 15 317-331 38-52 (55)
184 2bni_A General control protein 28.3 75 0.0026 20.6 3.7 26 186-211 2-27 (34)
185 1m1j_B Fibrinogen beta chain; 28.3 4.6E+02 0.016 26.1 11.4 10 57-66 20-29 (464)
186 1jad_A PLC-beta, phospholipase 27.7 3.6E+02 0.012 24.8 13.8 94 137-237 29-144 (251)
187 4ani_A Protein GRPE; chaperone 27.6 1.4E+02 0.0047 26.8 6.8 23 147-170 59-81 (213)
188 3nw0_A Non-structural maintena 27.5 40 0.0014 30.5 3.3 43 284-327 180-229 (238)
189 2dgc_A Protein (GCN4); basic d 27.4 1.7E+02 0.0059 21.0 6.7 28 192-219 30-57 (63)
190 2kn9_A Rubredoxin; metalloprot 27.2 30 0.001 26.7 2.0 16 316-331 61-76 (81)
191 3ryc_E Stathmin-4; alpha-tubul 26.9 2.9E+02 0.0098 23.4 9.2 24 157-180 63-86 (143)
192 2ve7_A Kinetochore protein HEC 26.6 84 0.0029 29.5 5.5 37 181-217 174-210 (315)
193 2qyw_A Vesicle transport throu 26.3 2.3E+02 0.0079 22.0 9.6 28 190-217 47-74 (102)
194 3hnw_A Uncharacterized protein 26.2 2.8E+02 0.0095 22.9 13.2 37 188-224 85-121 (138)
195 1x79_B RAB GTPase binding effe 25.8 2E+02 0.0068 23.3 6.8 46 191-236 19-68 (112)
196 6rxn_A Rubredoxin; electron tr 25.3 27 0.00093 24.0 1.3 14 317-330 32-45 (46)
197 4b6x_A AVRRPS4, avirulence pro 25.2 2.4E+02 0.0081 21.8 7.8 66 134-207 19-84 (90)
198 1j1d_B Troponin T, TNT; THIN f 24.6 1.7E+02 0.0059 23.4 6.2 43 197-239 47-89 (106)
199 1wt6_A Myotonin-protein kinase 24.2 1.6E+02 0.0054 22.7 5.6 15 198-212 51-65 (81)
200 1wle_A Seryl-tRNA synthetase; 24.2 5.4E+02 0.019 25.6 14.4 36 208-243 118-153 (501)
201 3bas_A Myosin heavy chain, str 24.0 2.4E+02 0.0082 21.4 8.6 21 199-219 35-55 (89)
202 1dx8_A Rubredoxin; electron tr 23.5 29 0.001 25.8 1.3 15 317-331 42-56 (70)
203 2dq3_A Seryl-tRNA synthetase; 23.0 2.3E+02 0.008 27.5 8.1 11 149-159 29-39 (425)
204 1nlw_A MAD protein, MAX dimeri 23.0 2.4E+02 0.0082 21.1 9.0 55 162-216 6-71 (80)
205 3kin_B Kinesin heavy chain; mo 22.8 1.1E+02 0.0038 24.6 4.8 24 196-219 93-116 (117)
206 3thf_A Protein shroom; coiled- 22.4 2.2E+02 0.0075 25.2 6.9 38 192-229 19-56 (190)
207 2cs3_A Protein C14ORF4, MY039 22.2 33 0.0011 26.8 1.4 31 283-314 14-48 (93)
208 4emc_A Monopolin complex subun 21.8 3.8E+02 0.013 23.7 8.3 52 181-236 30-81 (190)
209 3ghg_C Fibrinogen gamma chain; 21.8 5.7E+02 0.02 25.0 11.7 51 157-213 83-133 (411)
210 3e98_A GAF domain of unknown f 21.7 2.3E+02 0.0078 25.6 7.3 20 194-213 74-93 (252)
211 1f5n_A Interferon-induced guan 21.7 6.5E+02 0.022 25.6 13.8 27 185-211 504-531 (592)
212 2a01_A Apolipoprotein A-I; fou 21.7 3.7E+02 0.013 23.8 8.7 28 134-161 100-127 (243)
213 3etw_A Adhesin A; antiparallel 20.9 3.4E+02 0.012 22.1 13.1 25 137-161 6-30 (119)
214 1lko_A Rubrerythrin all-iron(I 20.7 24 0.00084 30.7 0.4 15 316-330 172-186 (191)
215 4e61_A Protein BIM1; EB1-like 20.6 3.3E+02 0.011 21.8 8.0 45 185-229 11-55 (106)
216 2wuj_A Septum site-determining 20.2 86 0.0029 22.1 3.2 9 147-155 23-31 (57)
217 2efr_A General control protein 20.1 4E+02 0.014 22.6 12.3 53 187-239 58-110 (155)
218 1joc_A EEA1, early endosomal a 20.1 3.4E+02 0.012 21.8 9.5 89 192-311 4-99 (125)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.2e-13 Score=104.53 Aligned_cols=52 Identities=29% Similarity=0.735 Sum_probs=49.0
Q ss_pred cccccccccccccceEEecCCCcccchhhHhhCCCCCCCcccccceEEEEeC
Q 019869 283 HQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 334 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~S 334 (334)
+...|+||++++++++|+||||+++|..|...+..||+||.+|...++||.+
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCSS
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeecC
Confidence 4678999999999999999999999999999999999999999999999863
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.35 E-value=2.4e-13 Score=101.09 Aligned_cols=52 Identities=19% Similarity=0.468 Sum_probs=47.7
Q ss_pred cccccccccccccceEEe--cCCCcccchhhHhhCC----CCCCCcccccceEEEEeC
Q 019869 283 HQMICRACKAKEASVLLM--PCRHLCLCKDCDVLVA----VCPVCQFVKNASVLVHLS 334 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlll--PC~HlclC~~C~~~l~----~CPvCr~~i~~~v~v~~S 334 (334)
....|+||++++++.+++ ||||+++|..|+..+. .||+||.+|...++||+|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 456899999999988777 9999999999999875 999999999999999987
No 3
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.31 E-value=5.4e-13 Score=103.60 Aligned_cols=54 Identities=28% Similarity=0.638 Sum_probs=50.6
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhhCCCCCCCcccccceEEEEeC
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 334 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~S 334 (334)
+.+...|+||++...+++++||||.++|..|...+..||+||.+|...+++|++
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCT
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeC
Confidence 445678999999999999999999999999999999999999999999999975
No 4
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.31 E-value=7.4e-13 Score=101.10 Aligned_cols=54 Identities=28% Similarity=0.741 Sum_probs=50.1
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhhCCCCCCCcccccceEEEEeC
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 334 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~S 334 (334)
+.+...|.||++...+.+++||||.++|..|...+..||+||.+|...++||+|
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 345679999999999999999999999999999999999999999999999997
No 5
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.29 E-value=5.6e-13 Score=99.38 Aligned_cols=52 Identities=23% Similarity=0.469 Sum_probs=47.7
Q ss_pred cccccccccccccceEEe--cCCCcccchhhHhhC----CCCCCCcccccceEEEEeC
Q 019869 283 HQMICRACKAKEASVLLM--PCRHLCLCKDCDVLV----AVCPVCQFVKNASVLVHLS 334 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlll--PC~HlclC~~C~~~l----~~CPvCr~~i~~~v~v~~S 334 (334)
+...|+||++++++++++ ||||+++|..|...+ ..||+||.+|...++||+|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 456899999999999988 999999999999875 4699999999999999986
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5e-13 Score=102.05 Aligned_cols=54 Identities=28% Similarity=0.752 Sum_probs=50.8
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhhCCCCCCCcccccceEEEEeC
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 334 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~S 334 (334)
+.....|.||++...+.+++||||.++|..|...+..||+||.+|...++||+|
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 345678999999999999999999999999999999999999999999999997
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.00 E-value=1.1e-10 Score=113.69 Aligned_cols=54 Identities=33% Similarity=0.831 Sum_probs=49.5
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhhCCCCCCCcccccceEEEEeC
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 334 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~S 334 (334)
+.....|.||++...+.+++||||.|+|..|...+..||+||.+|...++||+|
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 445689999999999999999999999999999999999999999999999997
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.51 E-value=6.3e-07 Score=75.47 Aligned_cols=45 Identities=20% Similarity=0.528 Sum_probs=38.7
Q ss_pred ccccccccccccceEEecCCCcccchhhHhh----CCCCCCCcccccceE
Q 019869 284 QMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASV 329 (334)
Q Consensus 284 ~~~C~iC~~~~~~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~~v 329 (334)
...|.||++.....+++||||. +|..|... ...||+||.++....
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 3479999999999999999996 99999864 378999999987643
No 9
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=2.5e-07 Score=69.03 Aligned_cols=44 Identities=20% Similarity=0.504 Sum_probs=38.8
Q ss_pred cccccccccccccceEEecCCCcccchhhHhhC----CCCCCCcccccc
Q 019869 283 HQMICRACKAKEASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNA 327 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l----~~CPvCr~~i~~ 327 (334)
....|.||++.....+++||+|. +|..|.... ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 45689999999999999999999 999998763 689999999863
No 10
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=7.4e-08 Score=71.45 Aligned_cols=50 Identities=24% Similarity=0.608 Sum_probs=42.0
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhhC----CCCCCCcccccceEEEE
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNASVLVH 332 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l----~~CPvCr~~i~~~v~v~ 332 (334)
+.....|.||++.... +++||+|. +|..|.... ..||+||.++.....+|
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 3456789999999998 88999999 999999753 78999999998665444
No 11
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=2.8e-07 Score=70.42 Aligned_cols=46 Identities=20% Similarity=0.586 Sum_probs=39.6
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhh----CCCCCCCcccccce
Q 019869 282 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNAS 328 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~~ 328 (334)
.....|.||++.....+++||+|. +|..|... ...||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGI 62 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSC
T ss_pred CCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCcccccc
Confidence 456789999999999999999998 89999865 47899999998643
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=3.1e-07 Score=68.36 Aligned_cols=46 Identities=22% Similarity=0.581 Sum_probs=39.4
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhhC-------CCCCCCcccccc
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV-------AVCPVCQFVKNA 327 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l-------~~CPvCr~~i~~ 327 (334)
+.....|.||++.....+++||+|. +|..|.... ..||+||.++..
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4567799999999999889999999 999998753 379999998854
No 13
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.33 E-value=2.7e-07 Score=69.53 Aligned_cols=46 Identities=26% Similarity=0.667 Sum_probs=39.2
Q ss_pred ccccccccccccccccceEEecCCCcccchhhHhh-----------CCCCCCCccccc
Q 019869 280 SRNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----------VAVCPVCQFVKN 326 (334)
Q Consensus 280 ~~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~-----------l~~CPvCr~~i~ 326 (334)
.+.....|.||++.....+.+||+|. +|..|... ...||+||.++.
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 34567899999999888888999998 99999874 458999999885
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.30 E-value=2.1e-07 Score=68.43 Aligned_cols=49 Identities=22% Similarity=0.562 Sum_probs=41.5
Q ss_pred cccccccccccccc-eEEecCCCcccchhhHhh----CCCCCCCcccccceEEEE
Q 019869 283 HQMICRACKAKEAS-VLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASVLVH 332 (334)
Q Consensus 283 ~~~~C~iC~~~~~~-vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~v~ 332 (334)
....|.||++.... ++++||+|. +|..|... ...||+||.++...++.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 35689999999887 689999999 99999864 479999999998876654
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=4.5e-07 Score=66.38 Aligned_cols=46 Identities=22% Similarity=0.575 Sum_probs=37.7
Q ss_pred cccccccccccccccce-------EEecCCCcccchhhHhh----CCCCCCCcccccc
Q 019869 281 RNHQMICRACKAKEASV-------LLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~v-------lllPC~HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
......|.||++..... +++||+|. +|..|... ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567899999976654 88999997 99999875 4799999998763
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=6.9e-07 Score=68.54 Aligned_cols=46 Identities=22% Similarity=0.613 Sum_probs=38.8
Q ss_pred ccccccccccccccccc----eEEecCCCcccchhhHhhC-------CCCCCCccccc
Q 019869 280 SRNHQMICRACKAKEAS----VLLMPCRHLCLCKDCDVLV-------AVCPVCQFVKN 326 (334)
Q Consensus 280 ~~~~~~~C~iC~~~~~~----vlllPC~HlclC~~C~~~l-------~~CPvCr~~i~ 326 (334)
.+.....|.||++.... .+++||+|. +|..|.... ..||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 34567889999998887 888999998 999998753 68999999874
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=8.3e-07 Score=66.37 Aligned_cols=48 Identities=27% Similarity=0.620 Sum_probs=39.8
Q ss_pred cccccccccccccccccceEEe-cCCCcccchhhHhh----CCCCCCCcccccc
Q 019869 279 ISRNHQMICRACKAKEASVLLM-PCRHLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 279 ~~~~~~~~C~iC~~~~~~vlll-PC~HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
+.+.....|.||++.....+.+ ||+|. +|..|... ...||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCc
Confidence 3456778999999998877666 99998 89999864 4799999999864
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.22 E-value=4e-07 Score=65.69 Aligned_cols=49 Identities=20% Similarity=0.527 Sum_probs=39.3
Q ss_pred ccccccccccccc-------eEEecCCCcccchhhHhh----CCCCCCCccccc--ceEEEEe
Q 019869 284 QMICRACKAKEAS-------VLLMPCRHLCLCKDCDVL----VAVCPVCQFVKN--ASVLVHL 333 (334)
Q Consensus 284 ~~~C~iC~~~~~~-------vlllPC~HlclC~~C~~~----l~~CPvCr~~i~--~~v~v~~ 333 (334)
...|.||++.... ++++||+|. +|..|... ...||+||.++. ..+.+||
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 4579999997655 388899999 99999864 479999999986 4566654
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.22 E-value=1.2e-06 Score=66.32 Aligned_cols=46 Identities=24% Similarity=0.584 Sum_probs=39.5
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhh----------CCCCCCCcccccc
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----------VAVCPVCQFVKNA 327 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~----------l~~CPvCr~~i~~ 327 (334)
+.....|.||++....-+++||+|. +|..|... ...||+||..+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4566799999999988889999998 99999864 5689999999863
No 20
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=9.7e-07 Score=66.87 Aligned_cols=46 Identities=24% Similarity=0.632 Sum_probs=39.4
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhh----------CCCCCCCcccccc
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----------VAVCPVCQFVKNA 327 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~----------l~~CPvCr~~i~~ 327 (334)
+.....|.||++.....+++||+|. +|..|... ...||+||..+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4567799999999988888899998 99999864 5799999998863
No 21
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.18 E-value=8.1e-07 Score=62.48 Aligned_cols=44 Identities=25% Similarity=0.535 Sum_probs=36.4
Q ss_pred cccccccccccccc----eEEecCCCcccchhhHhh----CCCCCCCcccccc
Q 019869 283 HQMICRACKAKEAS----VLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 283 ~~~~C~iC~~~~~~----vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
....|.||++.... ++++||+|. +|..|... -..||+||.++.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 35689999997644 899999997 99999875 3799999998753
No 22
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.17 E-value=1.1e-06 Score=66.28 Aligned_cols=45 Identities=33% Similarity=0.709 Sum_probs=36.0
Q ss_pred cccccccccccc---ccceEEecCCCcccchhhHhh----CCCCCCCcccccc
Q 019869 282 NHQMICRACKAK---EASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 282 ~~~~~C~iC~~~---~~~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
.....|.||++. ...++++||+|. +|..|... -..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCC
Confidence 456789999665 355677899998 99999864 3789999999864
No 23
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.17 E-value=1e-06 Score=64.96 Aligned_cols=46 Identities=26% Similarity=0.567 Sum_probs=37.1
Q ss_pred ccccccccccccc---cceEEecCCCcccchhhHhh----CCCCCCCcccccce
Q 019869 282 NHQMICRACKAKE---ASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNAS 328 (334)
Q Consensus 282 ~~~~~C~iC~~~~---~~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~~ 328 (334)
.....|.||++.. ..++++||+|. +|..|... -..||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCc
Confidence 3456899997654 56788999999 99999864 47899999998764
No 24
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.13 E-value=1.1e-06 Score=86.90 Aligned_cols=49 Identities=24% Similarity=0.675 Sum_probs=42.8
Q ss_pred ccccccccccccceEEecCCCcccchhhHh-----hCCCCCCCcccccceEEEEe
Q 019869 284 QMICRACKAKEASVLLMPCRHLCLCKDCDV-----LVAVCPVCQFVKNASVLVHL 333 (334)
Q Consensus 284 ~~~C~iC~~~~~~vlllPC~HlclC~~C~~-----~l~~CPvCr~~i~~~v~v~~ 333 (334)
...|.||++.....+++||||. +|..|.. ....||+||.++.....|.+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 4689999999999999999999 6999986 35899999999988776643
No 25
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.12 E-value=1.7e-06 Score=60.88 Aligned_cols=43 Identities=23% Similarity=0.659 Sum_probs=35.8
Q ss_pred cccccccccccccc---eEEec-CCCcccchhhHhh----CCCCCCCccccc
Q 019869 283 HQMICRACKAKEAS---VLLMP-CRHLCLCKDCDVL----VAVCPVCQFVKN 326 (334)
Q Consensus 283 ~~~~C~iC~~~~~~---vlllP-C~HlclC~~C~~~----l~~CPvCr~~i~ 326 (334)
+...|.||++.... ++.+| |+|. +|..|... ...||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45689999998766 77787 9998 99999875 478999998864
No 26
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.12 E-value=4.7e-07 Score=66.88 Aligned_cols=44 Identities=23% Similarity=0.601 Sum_probs=36.5
Q ss_pred cccccccccccccce-------EEecCCCcccchhhHhh----CCCCCCCcccccc
Q 019869 283 HQMICRACKAKEASV-------LLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 283 ~~~~C~iC~~~~~~v-------lllPC~HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
....|.||++..... +++||+|. +|..|... ...||+||.++..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 456899999976553 88999998 99999864 4799999999863
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.11 E-value=1.9e-06 Score=64.87 Aligned_cols=47 Identities=21% Similarity=0.624 Sum_probs=39.5
Q ss_pred cccccccccccccccccceEEec-CCCcccchhhHhhC------CCCCCCccccc
Q 019869 279 ISRNHQMICRACKAKEASVLLMP-CRHLCLCKDCDVLV------AVCPVCQFVKN 326 (334)
Q Consensus 279 ~~~~~~~~C~iC~~~~~~vlllP-C~HlclC~~C~~~l------~~CPvCr~~i~ 326 (334)
+.+.....|.||++....-+.+| |+|. +|..|.... ..||+||.++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 34567789999999999999999 9998 999998642 58999999753
No 28
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=2e-06 Score=64.30 Aligned_cols=48 Identities=23% Similarity=0.583 Sum_probs=38.0
Q ss_pred cccccccccccccc---cceEEecCCCcccchhhHhh----CCCCCCCcccccceE
Q 019869 281 RNHQMICRACKAKE---ASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASV 329 (334)
Q Consensus 281 ~~~~~~C~iC~~~~---~~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~~v 329 (334)
+.....|.||++.. ..+.++||+|. +|..|... -..||+||.++....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCccccccc
Confidence 34567899999874 45667799999 99999864 479999999987643
No 29
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=1.8e-06 Score=63.37 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=39.0
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhh-----CCCCCCCcccccc
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNA 327 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 327 (334)
+.....|.||++.....+.+||+|. +|..|... ...||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4567889999999888888999999 99999874 3689999998854
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.05 E-value=2.6e-06 Score=66.28 Aligned_cols=45 Identities=22% Similarity=0.696 Sum_probs=38.6
Q ss_pred ccccccccccccccccceEEec-CCCcccchhhHhhC------CCCCCCcccc
Q 019869 280 SRNHQMICRACKAKEASVLLMP-CRHLCLCKDCDVLV------AVCPVCQFVK 325 (334)
Q Consensus 280 ~~~~~~~C~iC~~~~~~vlllP-C~HlclC~~C~~~l------~~CPvCr~~i 325 (334)
.+.....|.||++-..+-+++| |||. +|..|.... ..||+||.++
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 4556789999999999988999 9999 999998642 5899999986
No 31
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.04 E-value=1.2e-06 Score=62.83 Aligned_cols=43 Identities=33% Similarity=0.737 Sum_probs=37.4
Q ss_pred cccccccccccccceEEecCCCcccchhhHhh-CCCCCCCccccc
Q 019869 283 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL-VAVCPVCQFVKN 326 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~-l~~CPvCr~~i~ 326 (334)
+...|.||++...+-+++||+|. +|..|... ...||+||..+.
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSS
T ss_pred cCCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEee
Confidence 45679999999999899999998 99999865 368999999875
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=2.9e-06 Score=60.11 Aligned_cols=41 Identities=27% Similarity=0.649 Sum_probs=34.7
Q ss_pred ccccccccccccccccceEEecCCCcccchhhHhhC-------CCCCCC
Q 019869 280 SRNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV-------AVCPVC 321 (334)
Q Consensus 280 ~~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l-------~~CPvC 321 (334)
.+.....|.||++.....+++||+|. +|..|.... ..||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 34567799999999998888999999 999997642 689998
No 33
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.00 E-value=2.4e-06 Score=67.05 Aligned_cols=45 Identities=27% Similarity=0.702 Sum_probs=37.1
Q ss_pred ccccccccccccccc---eEEecCCCcccchhhHhh----CCCCCCCcccccc
Q 019869 282 NHQMICRACKAKEAS---VLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~---vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
.....|.||++.... ++.+||+|. +|..|... -..||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 356789999987665 888999997 99999864 4799999998864
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.96 E-value=2.4e-06 Score=62.46 Aligned_cols=42 Identities=31% Similarity=0.698 Sum_probs=32.9
Q ss_pred ccccccccc-cccc----eEEecCCCcccchhhHhhC-----CCCCCCccccc
Q 019869 284 QMICRACKA-KEAS----VLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKN 326 (334)
Q Consensus 284 ~~~C~iC~~-~~~~----vlllPC~HlclC~~C~~~l-----~~CPvCr~~i~ 326 (334)
...|.||++ ...+ ++++||||. +|..|.... ..||+||.++.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCccc
Confidence 457999999 2222 267899999 999998754 67999999985
No 35
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.96 E-value=2.6e-06 Score=65.79 Aligned_cols=47 Identities=19% Similarity=0.579 Sum_probs=37.1
Q ss_pred cccccccccccccc--cceEEec--CCCcccchhhHhhC-----CCCCCCcccccce
Q 019869 281 RNHQMICRACKAKE--ASVLLMP--CRHLCLCKDCDVLV-----AVCPVCQFVKNAS 328 (334)
Q Consensus 281 ~~~~~~C~iC~~~~--~~vlllP--C~HlclC~~C~~~l-----~~CPvCr~~i~~~ 328 (334)
+.+...|.||++.. .++.++| |||. +|..|...+ ..||+||.++...
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 34567899999966 3456666 9998 999998764 5899999998653
No 36
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=3.3e-06 Score=63.40 Aligned_cols=44 Identities=23% Similarity=0.600 Sum_probs=35.8
Q ss_pred ccccccccccccc---ceEEecCCCcccchhhHhh----CCCCCCCcccccc
Q 019869 283 HQMICRACKAKEA---SVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 283 ~~~~C~iC~~~~~---~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
....|.||++... .++.+||+|. +|..|... -..||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4568999997543 4588999998 99999864 4799999998864
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.92 E-value=2.7e-06 Score=70.04 Aligned_cols=45 Identities=27% Similarity=0.639 Sum_probs=38.5
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhh-----CCCCCCCcccccc
Q 019869 282 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNA 327 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 327 (334)
.....|.||++....-+.+||||. +|..|... ...||+||.++..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 345789999999999999999999 99999853 3499999999865
No 38
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.91 E-value=4.8e-06 Score=67.54 Aligned_cols=45 Identities=27% Similarity=0.613 Sum_probs=38.5
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhhC-----CCCCCCccccc
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKN 326 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l-----~~CPvCr~~i~ 326 (334)
......|.||++....-+.+||||. +|..|.... ..||+||..+.
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3456789999999998888999999 999998753 48999999875
No 39
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=1e-05 Score=58.53 Aligned_cols=40 Identities=25% Similarity=0.672 Sum_probs=34.3
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhh-------CCCCCCC
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-------VAVCPVC 321 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~-------l~~CPvC 321 (334)
+.....|.||++.....+++||+|. +|..|... ...||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 4567799999999999888999999 99999764 2489998
No 40
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.83 E-value=7.4e-06 Score=61.71 Aligned_cols=46 Identities=9% Similarity=0.015 Sum_probs=39.0
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhh-----CCCCCCCcccccc
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNA 327 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 327 (334)
+.....|.||++-..+-+.+||||. +|..|... ...||+|+.++..
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CcccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 3457799999999988888999999 99999764 4679999999853
No 41
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.83 E-value=4.4e-06 Score=66.63 Aligned_cols=45 Identities=27% Similarity=0.462 Sum_probs=38.8
Q ss_pred cccccccccccccccceEE-ecCCCcccchhhHhh----C-CCCCCCccccc
Q 019869 281 RNHQMICRACKAKEASVLL-MPCRHLCLCKDCDVL----V-AVCPVCQFVKN 326 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vll-lPC~HlclC~~C~~~----l-~~CPvCr~~i~ 326 (334)
+.....|.||++....-+. +||||. +|..|... . ..||+||.++.
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 4567799999999998888 999999 99999864 2 58999999974
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.82 E-value=6e-06 Score=66.34 Aligned_cols=46 Identities=26% Similarity=0.637 Sum_probs=39.2
Q ss_pred cccccccccccccccceEEe-cCCCcccchhhHhhC----CCCCCCcccccc
Q 019869 281 RNHQMICRACKAKEASVLLM-PCRHLCLCKDCDVLV----AVCPVCQFVKNA 327 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlll-PC~HlclC~~C~~~l----~~CPvCr~~i~~ 327 (334)
+.....|.||++....-+.+ ||||. +|..|.... ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 45677999999998888887 99998 899998653 789999999864
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.82 E-value=3.5e-06 Score=67.51 Aligned_cols=45 Identities=22% Similarity=0.579 Sum_probs=37.6
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhhC-------CCCCCCcccccc
Q 019869 282 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV-------AVCPVCQFVKNA 327 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l-------~~CPvCr~~i~~ 327 (334)
.....|.||++.....+.+||||. +|..|.... ..||+||.++..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred cCCCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 346689999999988888999998 899998642 389999998753
No 44
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.82 E-value=4.2e-06 Score=66.09 Aligned_cols=46 Identities=20% Similarity=0.485 Sum_probs=38.3
Q ss_pred cccccccccccccccceEEe-cCCCcccchhhHhh----CCCCCCCcccccc
Q 019869 281 RNHQMICRACKAKEASVLLM-PCRHLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlll-PC~HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
+.....|.||++...+-+.+ ||||. +|..|... ...||+||..+..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 34567899999998887777 99999 99999864 3689999998863
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.80 E-value=6.9e-06 Score=70.79 Aligned_cols=46 Identities=24% Similarity=0.597 Sum_probs=38.3
Q ss_pred ccccccccccccccccceEEe-cCCCcccchhhHhh-----CCCCCCCccccc
Q 019869 280 SRNHQMICRACKAKEASVLLM-PCRHLCLCKDCDVL-----VAVCPVCQFVKN 326 (334)
Q Consensus 280 ~~~~~~~C~iC~~~~~~vlll-PC~HlclC~~C~~~-----l~~CPvCr~~i~ 326 (334)
.+.....|.||++.....+.+ ||||. +|..|... -..||+||.++.
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 345667999999998887776 99998 89999864 367999999884
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.79 E-value=5.6e-06 Score=71.11 Aligned_cols=44 Identities=25% Similarity=0.602 Sum_probs=38.0
Q ss_pred cccccccccccccceEEecCCCcccchhhHhhC-----CCCCCCcccccc
Q 019869 283 HQMICRACKAKEASVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKNA 327 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l-----~~CPvCr~~i~~ 327 (334)
....|.||++....-+.+||+|. +|..|.... ..||+||.++..
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 45689999999999999999998 899998642 479999999865
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.71 E-value=1.6e-05 Score=64.98 Aligned_cols=46 Identities=24% Similarity=0.503 Sum_probs=39.5
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhhC-----CCCCCCcccccc
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKNA 327 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l-----~~CPvCr~~i~~ 327 (334)
+.....|.||++....-+.+||||. +|..|.... ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4567899999999998888999999 999998652 499999999865
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.69 E-value=7.5e-06 Score=66.85 Aligned_cols=45 Identities=22% Similarity=0.565 Sum_probs=38.9
Q ss_pred cccccccccccccccceEEe-cCCCcccchhhHhhC--CCCCCCccccc
Q 019869 281 RNHQMICRACKAKEASVLLM-PCRHLCLCKDCDVLV--AVCPVCQFVKN 326 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlll-PC~HlclC~~C~~~l--~~CPvCr~~i~ 326 (334)
+.....|.||++....-+++ ||||. +|..|.... ..||+||.++.
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred chhCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 34567999999999988888 99999 899998765 68999999874
No 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.60 E-value=1.6e-05 Score=64.04 Aligned_cols=41 Identities=27% Similarity=0.465 Sum_probs=32.5
Q ss_pred ccccccccccc------------------ceEEecCCCcccchhhHhh---------CCCCCCCccccc
Q 019869 285 MICRACKAKEA------------------SVLLMPCRHLCLCKDCDVL---------VAVCPVCQFVKN 326 (334)
Q Consensus 285 ~~C~iC~~~~~------------------~vlllPC~HlclC~~C~~~---------l~~CPvCr~~i~ 326 (334)
..|.||++... .+.++||+|. ||..|... -..||+||..+.
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 47999988752 3448999998 99999753 358999999874
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.56 E-value=1.7e-05 Score=64.35 Aligned_cols=46 Identities=24% Similarity=0.613 Sum_probs=39.2
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhh-----CCCCCCCcccccc
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNA 327 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 327 (334)
+.....|.||++.....+.+||||. +|..|... ...||+||.++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 3456789999999999888999999 99999863 3689999999754
No 51
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.55 E-value=0.00019 Score=63.82 Aligned_cols=45 Identities=7% Similarity=-0.141 Sum_probs=37.6
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhh-----CCCCCCCcccccc
Q 019869 282 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNA 327 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 327 (334)
.....|.||++-..+=|++||||. +|..|... -..||+|+.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 457799999999999899999998 99999653 1369999998754
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.49 E-value=3.1e-05 Score=63.01 Aligned_cols=44 Identities=23% Similarity=0.601 Sum_probs=36.5
Q ss_pred cccccccccccccce-------EEecCCCcccchhhHhh----CCCCCCCcccccc
Q 019869 283 HQMICRACKAKEASV-------LLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 283 ~~~~C~iC~~~~~~v-------lllPC~HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
+...|.||++....- +++||||. +|..|... -..||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 456899999876654 88999998 99999864 3799999999863
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.47 E-value=5.5e-05 Score=61.48 Aligned_cols=50 Identities=20% Similarity=0.514 Sum_probs=40.4
Q ss_pred cccccccccccccce-------EEecCCCcccchhhHhh----CCCCCCCccccc--ceEEEEe
Q 019869 283 HQMICRACKAKEASV-------LLMPCRHLCLCKDCDVL----VAVCPVCQFVKN--ASVLVHL 333 (334)
Q Consensus 283 ~~~~C~iC~~~~~~v-------lllPC~HlclC~~C~~~----l~~CPvCr~~i~--~~v~v~~ 333 (334)
....|.||++..... +++||+|. +|..|... ...||+||.++. ..+.+|+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 457899999876653 88999999 99999864 589999999985 5566664
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.0001 Score=56.55 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=23.6
Q ss_pred eEEecCCCcccchhhHhh----CCCCCCCcccccc
Q 019869 297 VLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 297 vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
+++.+|+|. ++..|... -..||+||.++..
T Consensus 43 ~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 43 VVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp EEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred EEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 344459999 99999874 3789999998753
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.23 E-value=4.2e-05 Score=65.04 Aligned_cols=44 Identities=20% Similarity=0.519 Sum_probs=37.7
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhhC-----CCCCCCcccc
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVK 325 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l-----~~CPvCr~~i 325 (334)
+.....|.||++-...-+.+||||. +|..|.... ..||+||.++
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 4567899999998888888999999 999998753 4899999975
No 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.19 E-value=0.00017 Score=62.19 Aligned_cols=46 Identities=24% Similarity=0.503 Sum_probs=39.7
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhhC-----CCCCCCcccccc
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKNA 327 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l-----~~CPvCr~~i~~ 327 (334)
+.....|.||++-...-+.+||||. +|..|.... ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 4567899999999888888999999 999998753 499999999865
No 57
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.10 E-value=0.00035 Score=54.21 Aligned_cols=46 Identities=4% Similarity=-0.005 Sum_probs=39.6
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhh----CCCCCCCcccccc
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
+.....|.||++-..+=|++||||. +|..|... ..+||+|+.++..
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CchheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 4567899999999999999999998 99999754 4799999998753
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.03 E-value=0.00027 Score=64.28 Aligned_cols=44 Identities=7% Similarity=-0.133 Sum_probs=37.6
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhh-----CCCCCCCccccc
Q 019869 282 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKN 326 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~-----l~~CPvCr~~i~ 326 (334)
.....|.||++-..+=|++||||. +|..|... -..||+|+.++.
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 356789999999999999999999 99999763 235999999985
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.03 E-value=0.00039 Score=55.81 Aligned_cols=47 Identities=4% Similarity=-0.006 Sum_probs=40.1
Q ss_pred ccccccccccccccccceEEecCCCcccchhhHhh----CCCCCCCcccccc
Q 019869 280 SRNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 280 ~~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
.+.....|.||++-..+=|++||||. +|..|... ..+||+|+.++..
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 34567899999999999999999999 99999764 3789999998753
No 60
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.95 E-value=0.00053 Score=54.79 Aligned_cols=46 Identities=4% Similarity=-0.039 Sum_probs=39.3
Q ss_pred cccccccccccccccceEEecCC-CcccchhhHhh----CCCCCCCcccccc
Q 019869 281 RNHQMICRACKAKEASVLLMPCR-HLCLCKDCDVL----VAVCPVCQFVKNA 327 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~-HlclC~~C~~~----l~~CPvCr~~i~~ 327 (334)
+.....|.||++-..+=|++||| |. +|..|... ...||+|+.++..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 44678999999999999999999 98 99999764 3689999998753
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.86 E-value=0.0006 Score=55.43 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=25.3
Q ss_pred ceEEecCCCcccchhhHhh----CCCCCCCccccc
Q 019869 296 SVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKN 326 (334)
Q Consensus 296 ~vlllPC~HlclC~~C~~~----l~~CPvCr~~i~ 326 (334)
.++++||+|. ++..|... -..||+||..+.
T Consensus 67 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 67 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred eEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 3688999999 99999875 478999999853
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.27 E-value=0.00068 Score=56.30 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=0.0
Q ss_pred ccccccccccc------------------ceEEecCCCcccchhhHhh----CCCCCCCcccc
Q 019869 285 MICRACKAKEA------------------SVLLMPCRHLCLCKDCDVL----VAVCPVCQFVK 325 (334)
Q Consensus 285 ~~C~iC~~~~~------------------~vlllPC~HlclC~~C~~~----l~~CPvCr~~i 325 (334)
..|.||++... .++++||+|. ++..|... -..||+||.++
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence 46888876543 3456799999 99999875 37899999985
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.22 E-value=0.0037 Score=48.21 Aligned_cols=44 Identities=30% Similarity=0.711 Sum_probs=33.8
Q ss_pred cccccccccccc--cceEEecCC-----CcccchhhHhh------CCCCCCCcccccc
Q 019869 283 HQMICRACKAKE--ASVLLMPCR-----HLCLCKDCDVL------VAVCPVCQFVKNA 327 (334)
Q Consensus 283 ~~~~C~iC~~~~--~~vlllPC~-----HlclC~~C~~~------l~~CPvCr~~i~~ 327 (334)
....|.||++.. ...+++||+ |. +...|... ...||+||..+.-
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 456899999753 345789997 98 89999764 2589999998753
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.98 E-value=0.0037 Score=49.06 Aligned_cols=42 Identities=24% Similarity=0.440 Sum_probs=34.7
Q ss_pred ccccccccccccccceEEec-CCCcccchhhHhhC----------CCCCC--Cccc
Q 019869 282 NHQMICRACKAKEASVLLMP-CRHLCLCKDCDVLV----------AVCPV--CQFV 324 (334)
Q Consensus 282 ~~~~~C~iC~~~~~~vlllP-C~HlclC~~C~~~l----------~~CPv--Cr~~ 324 (334)
.....|.||++-..+=|.+| |||. +|..|.... ..||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 35678999999999989997 9998 999996532 38999 9854
No 65
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.86 E-value=0.0072 Score=49.03 Aligned_cols=45 Identities=27% Similarity=0.687 Sum_probs=32.8
Q ss_pred ccccccccccc-eEEecCCCcccchhhHhh-----CCCCCCCcccccceEEE
Q 019869 286 ICRACKAKEAS-VLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNASVLV 331 (334)
Q Consensus 286 ~C~iC~~~~~~-vlllPC~HlclC~~C~~~-----l~~CPvCr~~i~~~v~v 331 (334)
-|..|.-.-+. .-++||.|. +|.+|+.. ...||.|+.+|...=+.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 35566554443 357899995 99999953 57999999998765443
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.48 E-value=0.003 Score=49.21 Aligned_cols=41 Identities=20% Similarity=0.530 Sum_probs=30.2
Q ss_pred cccccccccccccc--e-EEecCCCcccchhhHhh------------CCCCCC--Cccc
Q 019869 283 HQMICRACKAKEAS--V-LLMPCRHLCLCKDCDVL------------VAVCPV--CQFV 324 (334)
Q Consensus 283 ~~~~C~iC~~~~~~--v-lllPC~HlclC~~C~~~------------l~~CPv--Cr~~ 324 (334)
....|.||++.... + .+.||+|. +|..|... .-.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35689999986432 2 33489999 99999542 138999 9987
No 67
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.04 E-value=0.54 Score=42.01 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=53.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----H
Q 019869 154 KVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESV----V 229 (334)
Q Consensus 154 r~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~----a 229 (334)
+.+.+.|+..+.| .+-.++.| | .+.|.+|+.+.+++.+|+.++.+|..|...|+.+....... +
T Consensus 23 ~q~~~~le~El~E-FqesSrEL----E-------~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~ 90 (189)
T 2v71_A 23 KQSFQEARDELVE-FQEGSREL----E-------AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQV 90 (189)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHH----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHH----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556655555 34444443 3 35667999999999999999999999999999887766544 5
Q ss_pred HHHHHHHHHHH
Q 019869 230 NLLKSNLQQAI 240 (334)
Q Consensus 230 ~~Lr~~LqQ~~ 240 (334)
+.|..+|.++.
T Consensus 91 ~~Lq~el~~l~ 101 (189)
T 2v71_A 91 SVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555543
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=94.42 E-value=0.014 Score=54.89 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=36.4
Q ss_pred cccccccccccccccceEE-ecCCCcccchhhHhhC------CCCCC--Cccccc
Q 019869 281 RNHQMICRACKAKEASVLL-MPCRHLCLCKDCDVLV------AVCPV--CQFVKN 326 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vll-lPC~HlclC~~C~~~l------~~CPv--Cr~~i~ 326 (334)
......|.||+.-...=|. ..|||. +|+.|.... ..||+ |+..+.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4567899999998888665 599997 999998752 37999 998764
No 69
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=92.83 E-value=0.33 Score=33.22 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 189 EKDMEIENMNRKNRELIERIKQMAAEAQNWHYRA 222 (334)
Q Consensus 189 eKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A 222 (334)
+.|+....+..+++|||+|+..|..|++..+.+.
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3445556778899999999999999999877654
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=89.74 E-value=0.15 Score=36.94 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=35.1
Q ss_pred ccccccccccccceEEe-cCCCcccchhhHhhC----CCCCCCccccc
Q 019869 284 QMICRACKAKEASVLLM-PCRHLCLCKDCDVLV----AVCPVCQFVKN 326 (334)
Q Consensus 284 ~~~C~iC~~~~~~vlll-PC~HlclC~~C~~~l----~~CPvCr~~i~ 326 (334)
...|.+|++-..+-++. ||||. +|+.|.... .+||+++.+..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCC
Confidence 35799999988888888 99998 899997752 67999999874
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=89.45 E-value=0.2 Score=36.31 Aligned_cols=44 Identities=18% Similarity=0.462 Sum_probs=29.9
Q ss_pred cccccccccccccceEEecCCCc----ccchhhHhh------CCCCCCCccccc
Q 019869 283 HQMICRACKAKEASVLLMPCRHL----CLCKDCDVL------VAVCPVCQFVKN 326 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~Hl----clC~~C~~~------l~~CPvCr~~i~ 326 (334)
....|.||++....-++.||.+. .+=..|... -..||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45689999987666678997642 123345432 478999998864
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.72 E-value=12 Score=37.22 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019869 174 SFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNL 236 (334)
Q Consensus 174 ~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~L 236 (334)
..+..+...+..+...++.++++..+...++++..+++..|...|+...+........|+.++
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~ 567 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQET 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHH
Confidence 334444445555555555556666666656666666666666666665555555444444433
No 73
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.33 E-value=12 Score=37.25 Aligned_cols=71 Identities=11% Similarity=0.169 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 172 MASFLSAIEKGLAKKLQEKDME---IENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 172 ~r~ll~ave~~~~~rLReKe~E---ie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
....+..++...+.++++.... ++...+....+++.+..++...+.-+....+.....+.++.++.++...
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333322 2222333333335555555544444455555555556677777777643
No 74
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=85.21 E-value=2.2 Score=41.91 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=51.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC
Q 019869 185 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQG 243 (334)
Q Consensus 185 ~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~~ 243 (334)
-++.++++||+.+.++..+|++.++++..|.+.+.......+..--.|+++++++....
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 35678899999999999999999999999999999999888888888999999887543
No 75
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=83.93 E-value=3.2 Score=30.38 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=27.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 188 QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRA 222 (334)
Q Consensus 188 ReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A 222 (334)
.+.+.+++.+..+|.+|+.++.+|..|.+.|+.+.
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888899999999999999988877654
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=83.43 E-value=0.34 Score=38.88 Aligned_cols=49 Identities=20% Similarity=0.534 Sum_probs=37.7
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhhC----CCCCCCcccccceEEE
Q 019869 281 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNASVLV 331 (334)
Q Consensus 281 ~~~~~~C~iC~~~~~~vlllPC~HlclC~~C~~~l----~~CPvCr~~i~~~v~v 331 (334)
+....-|+.|+-...+.|- =.-|+ +|..|-..| ..||+|..+....++|
T Consensus 25 ~~G~~nCKsCWf~~k~LV~-C~dHY-LCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKGLVE-CNNHY-LCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CSCCCCCCSSCSCCSSEEE-CSSCE-EEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred ccCcccChhhccccCCeee-ecchh-hHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 4456789999999886552 34577 999999876 8999999988665543
No 77
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=83.37 E-value=9.1 Score=37.20 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=9.5
Q ss_pred HHhhhHHHHHHHHHHHHHHH
Q 019869 221 RAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 221 ~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
+.++.|+.+..|..+|+.+-
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555544443
No 78
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=80.62 E-value=28 Score=30.33 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=23.4
Q ss_pred hHHHHHHhHhhHHHHHHHHHhHH---HHHHHHHHHHH
Q 019869 136 DNVRTELDRQKEEFDQYIKVQEE---YLAKGVQDMKQ 169 (334)
Q Consensus 136 ~~l~~~l~rq~~EiD~~ir~q~e---rlR~~lee~rq 169 (334)
.+=+.+|++|..|+...++.++| |||+...|.++
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k 41 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSK 41 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34457799999999999999866 67766666553
No 79
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=78.88 E-value=20 Score=27.54 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHH
Q 019869 174 SFLSAIEKGLAKKLQEK----DMEIENMNRKNRELI 205 (334)
Q Consensus 174 ~ll~ave~~~~~rLReK----e~Eie~~~krnaELe 205 (334)
+|++|||..+-+||||+ .+||+.+++-..||.
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~ 38 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLK 38 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46777777777777664 366666666555544
No 80
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=78.71 E-value=2.9 Score=27.38 Aligned_cols=26 Identities=15% Similarity=0.417 Sum_probs=20.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~ 212 (334)
--+-..+|+.+.++|+-|+++++.|+
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 33445789999999999999998764
No 81
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=77.96 E-value=1.6 Score=33.37 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019869 192 MEIENMNRKNRELIERIKQMAAEAQNWHYRAKY 224 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~ 224 (334)
+|++-++.+..||++++.+|+.|+...+..|-.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~asp 47 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLASP 47 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 478889999999999999999999876665543
No 82
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.34 E-value=27 Score=35.65 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=13.8
Q ss_pred HhHhhHHHHHHHHHhHHHHHHHHH
Q 019869 142 LDRQKEEFDQYIKVQEEYLAKGVQ 165 (334)
Q Consensus 142 l~rq~~EiD~~ir~q~erlR~~le 165 (334)
+++-..+++.+++...|.||..+.
T Consensus 76 lsKnsKdseqy~k~~~E~Lr~rq~ 99 (562)
T 3ghg_A 76 YQKNNKDSHSLTTNIMEILRGDFS 99 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSHHH
T ss_pred HHhhchhHHHHHHHHHHHHHHHHH
Confidence 334455677777666666654443
No 83
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=76.76 E-value=14 Score=27.78 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=33.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019869 183 LAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKS 234 (334)
Q Consensus 183 ~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~ 234 (334)
.-.+|++|.+||++++...--|+..+-+...=+...++.+.-.+.-+++|..
T Consensus 8 L~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k 59 (74)
T 2q6q_A 8 LNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEK 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Confidence 3457889999999999888877777766655454444444444333444433
No 84
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=76.73 E-value=6.5 Score=26.85 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=25.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 185 KKLQEKDMEIENMNRKNRELIERIKQMAAEA 215 (334)
Q Consensus 185 ~rLReKe~Eie~~~krnaELeErl~ql~~E~ 215 (334)
+++-.-+.||++.+.+..+|+.+++.|+..+
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444578899999999999999999998654
No 85
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=74.90 E-value=29 Score=27.88 Aligned_cols=31 Identities=16% Similarity=0.362 Sum_probs=22.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 184 AKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYR 221 (334)
Q Consensus 184 ~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~ 221 (334)
..|+|+.+.||+++...|. .|-.|+..|..-
T Consensus 64 ~~~v~eLe~everL~~ENq-------~L~~e~~~~~~~ 94 (104)
T 3s9g_A 64 DARVRELELELDRLRAENL-------QLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHH-------HHHHHHHhhccc
Confidence 5678888888888887776 344777778653
No 86
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.88 E-value=18 Score=28.01 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 019869 201 NRELIERIKQMAAEAQNWHYRAKY 224 (334)
Q Consensus 201 naELeErl~ql~~E~q~Wq~~A~~ 224 (334)
-..|+..+.+|..|-..|+.+...
T Consensus 50 ~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 50 REELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777888888888876544
No 87
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.29 E-value=36 Score=34.73 Aligned_cols=98 Identities=12% Similarity=0.184 Sum_probs=47.2
Q ss_pred HHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHH
Q 019869 137 NVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHM--ASFLSAIEKGLAKKLQEKDMEIENMNRKNR-ELIERIKQMAA 213 (334)
Q Consensus 137 ~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~--r~ll~ave~~~~~rLReKe~Eie~~~krna-ELeErl~ql~~ 213 (334)
.|-.-|.+|..+|...| ++||..+++.-|-+. -+.+..+-....+++.... +.++.-.+.. ||+.++.-|..
T Consensus 50 rLQglLdkqErDltkrI----NELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKe 124 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRI----NKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKR 124 (562)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHH----HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHH
Confidence 45555666666665544 567776666522221 2222333333334444333 3444434444 77777766666
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 214 EAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 214 E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
+.+.--..-+..+..+..++.+|++|
T Consensus 125 kVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 125 KVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543333334444444444444444
No 88
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=73.89 E-value=3 Score=27.58 Aligned_cols=21 Identities=38% Similarity=0.721 Sum_probs=17.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIE 206 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeE 206 (334)
-+-+|++||+++..+|.+|.|
T Consensus 15 ~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 15 EIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHh
Confidence 355699999999999998875
No 89
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=73.13 E-value=36 Score=27.70 Aligned_cols=85 Identities=11% Similarity=0.201 Sum_probs=57.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019869 153 IKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLL 232 (334)
Q Consensus 153 ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~L 232 (334)
++...++|+..+++-|.++..+- .-....+-..+.||..+...+-.|..+++.|+..+.+..+.++...+.+..+
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~-----~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQY-----AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 44555666666555444433221 1111112234558889999999999999999999999998888877777788
Q ss_pred HHHHHHHHhc
Q 019869 233 KSNLQQAISQ 242 (334)
Q Consensus 233 r~~LqQ~~~~ 242 (334)
.+.+.+++..
T Consensus 83 E~k~n~aiEr 92 (111)
T 2v66_B 83 EQRLNQAIER 92 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877754
No 90
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=72.97 E-value=50 Score=29.24 Aligned_cols=57 Identities=9% Similarity=0.173 Sum_probs=47.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQG 243 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~~ 243 (334)
+-..+.||..+...+..|..+++.|+..+...-+..+-..+....+...|.+++...
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445567888888889999999999999999988888888888888888888877643
No 91
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=72.92 E-value=8.8 Score=31.38 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHH
Q 019869 198 NRKNRELIERIKQMAAEAQNWHYRAKYNESV----VNLLKSNLQQAI 240 (334)
Q Consensus 198 ~krnaELeErl~ql~~E~q~Wq~~A~~nEa~----a~~Lr~~LqQ~~ 240 (334)
.|++.+|..++.+|..|...|+.+....... ++.|...|.++.
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr 48 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTR 48 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999988777664 444555555553
No 92
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=71.24 E-value=21 Score=27.76 Aligned_cols=48 Identities=29% Similarity=0.451 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 019869 160 LAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERI 208 (334)
Q Consensus 160 lR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl 208 (334)
-|..|+|+||.-.-..|...+. .-+.+-.|++||..+...|.+|.+-.
T Consensus 21 YWk~lAE~Rr~AL~eaL~EN~~-Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 21 YWKEVAEQRRKALYEALKENEK-LHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566665444333333332 23445556777777777766665443
No 93
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=70.84 E-value=20 Score=32.25 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019869 158 EYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVV 229 (334)
Q Consensus 158 erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a 229 (334)
++-|..|+|.||.-.-..|. |-+.+.+++..|++.+..|..|+...+.+|...+.+|
T Consensus 96 e~YWk~lAE~RR~AL~eaLe---------------EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la 152 (209)
T 2wvr_A 96 SQYWKEVAEKRRKALYEALK---------------ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMA 152 (209)
T ss_dssp TTHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777654333332 2333444444444444444444444444444443333
No 94
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=70.65 E-value=61 Score=29.23 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=26.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNL 236 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~L 236 (334)
+.....||+.+.++...|++.+..+..+....+......+..+..++..|
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666666666666665555544444444444444444433
No 95
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=70.14 E-value=20 Score=25.77 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 191 DMEIENMNRKNRELIERIKQMAAEA 215 (334)
Q Consensus 191 e~Eie~~~krnaELeErl~ql~~E~ 215 (334)
+.+++.+...|.+|...+..|..|.
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.38 E-value=62 Score=31.33 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=32.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019869 188 QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 188 ReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
.+.+.|++++++...+..++++++..|+..-+....+....+..-+..++.+.
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 34445555666666666677777777776666666666555555555555443
No 97
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=69.16 E-value=38 Score=26.32 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 192 MEIENMNRKNRELIERIKQMAAEAQNWHYR 221 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~~E~q~Wq~~ 221 (334)
.+++.+.+.|..|+.++.+|..|.+.++.+
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666665554443
No 98
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=69.03 E-value=11 Score=23.79 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 190 KDMEIENMNRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 190 Ke~Eie~~~krnaELeErl~ql~~E~q~ 217 (334)
.|+|+.++..-..+|++|+.+|+.-.|+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888888888899999888876653
No 99
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=68.17 E-value=94 Score=30.44 Aligned_cols=68 Identities=6% Similarity=0.077 Sum_probs=43.8
Q ss_pred HHHhHhhHHHHHHHHHhHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 019869 140 TELDRQKEEFDQYIKVQEEYLAKGVQ-------------DMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIE 206 (334)
Q Consensus 140 ~~l~rq~~EiD~~ir~q~erlR~~le-------------e~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeE 206 (334)
..+++-..+++.|++.-.+.||..+. +..++|+.-|=..|+..+. .||....-|++...++..||.
T Consensus 77 ~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 77 FNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34555667888888888888876554 2344555555566666555 666666666666666666666
Q ss_pred HH
Q 019869 207 RI 208 (334)
Q Consensus 207 rl 208 (334)
.|
T Consensus 156 ~I 157 (390)
T 1deq_A 156 DI 157 (390)
T ss_pred HH
Confidence 66
No 100
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.41 E-value=16 Score=27.75 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=20.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAAEAQNW 218 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~E~q~W 218 (334)
||+||+-|+.+.++..+.++.++.|..|...+
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666666666666666666665555443
No 101
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=67.16 E-value=31 Score=24.99 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=25.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019869 182 GLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNL 236 (334)
Q Consensus 182 ~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~L 236 (334)
.+|.|-|+|- ..+..+|+.++..|..|+......+..-+..+..|+.-|
T Consensus 12 ~AA~R~R~KK------k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 12 TAATRYRQKK------RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666532 233444555555566666555555555545555555443
No 102
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.35 E-value=84 Score=30.77 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=15.3
Q ss_pred HhHhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019869 142 LDRQKEEFDQYIKVQEEYLAKGVQDMKQRHM 172 (334)
Q Consensus 142 l~rq~~EiD~~ir~q~erlR~~lee~rqrh~ 172 (334)
|+.-.++.++=|+..+++|+..|.+..+-|.
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~ 84 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSK 84 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 3333344444455555555555555544443
No 103
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=64.76 E-value=37 Score=25.35 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 190 KDMEIENMNRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 190 Ke~Eie~~~krnaELeErl~ql~~E~q~ 217 (334)
|++.|..+..+..+|+.....+..|++.
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~en~~ 54 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTLENDQ 54 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544443
No 104
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=63.01 E-value=51 Score=25.55 Aligned_cols=50 Identities=28% Similarity=0.396 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 019869 158 EYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERI 208 (334)
Q Consensus 158 erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl 208 (334)
+.-|..|+|.||.-.-..|.-.+ ..-.++-.+++||..+.+.|.+|.+-+
T Consensus 27 e~YWk~lAE~RR~AL~eaL~EN~-~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 27 SQYWKEVAEKRRKALYEALKENE-KLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666543333332222 123334456666666666666555443
No 105
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.79 E-value=12 Score=28.00 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=29.3
Q ss_pred cccccccccccccceE-EecCCCcccchhhHhh----C--CCCCCCcccccc
Q 019869 283 HQMICRACKAKEASVL-LMPCRHLCLCKDCDVL----V--AVCPVCQFVKNA 327 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vl-llPC~HlclC~~C~~~----l--~~CPvCr~~i~~ 327 (334)
....|.||++-...-. -..|+|. +=..|..+ . .+||+|+.....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3467888887554222 2267777 67777762 2 789999988754
No 106
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=62.73 E-value=18 Score=26.02 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019869 198 NRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLK 233 (334)
Q Consensus 198 ~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr 233 (334)
.....+|+.++..|..|+..+..........+..|+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667778888888888877665555444443333
No 107
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=61.86 E-value=2.1 Score=41.87 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=31.4
Q ss_pred cccccccccccccc---eE-----EecCCCcccchhhHhh---------------CCCCCCCcccccce
Q 019869 283 HQMICRACKAKEAS---VL-----LMPCRHLCLCKDCDVL---------------VAVCPVCQFVKNAS 328 (334)
Q Consensus 283 ~~~~C~iC~~~~~~---vl-----llPC~HlclC~~C~~~---------------l~~CPvCr~~i~~~ 328 (334)
....|.||++.... +- -.+|+|. +-..|-.. ...||.|+.+|..+
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 45689999975443 11 2378888 78888642 15799999998754
No 108
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=61.72 E-value=78 Score=31.86 Aligned_cols=74 Identities=12% Similarity=0.265 Sum_probs=38.6
Q ss_pred hHHHHHHhHhhH-----HHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHH
Q 019869 136 DNVRTELDRQKE-----EFDQYIKVQEEYLA--KGVQDMKQRHMASFLSAIEKGLAKKLQEKD-------MEIENMNRKN 201 (334)
Q Consensus 136 ~~l~~~l~rq~~-----EiD~~ir~q~erlR--~~lee~rqrh~r~ll~ave~~~~~rLReKe-------~Eie~~~krn 201 (334)
+.+...+.+-.. .||.++.+..++-. ..+++. ++--.++...+++..+.++ ++++.+..+.
T Consensus 51 ~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l-----~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (501)
T 1wle_A 51 EDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSL-----EEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARG 125 (501)
T ss_dssp HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhcCccccccccccHHHHHHHH
Confidence 445555665443 38999887755422 222222 2223444444554444332 4566666666
Q ss_pred HHHHHHHHHHHHH
Q 019869 202 RELIERIKQMAAE 214 (334)
Q Consensus 202 aELeErl~ql~~E 214 (334)
.+|.++++.++.+
T Consensus 126 ~~l~~~i~~l~~~ 138 (501)
T 1wle_A 126 REIRKQLTLLYPK 138 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 109
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=61.28 E-value=37 Score=26.90 Aligned_cols=84 Identities=12% Similarity=0.214 Sum_probs=49.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhHH
Q 019869 155 VQEEYLAKGVQDMKQRHMASFLSAI-EKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWH------YRAKYNES 227 (334)
Q Consensus 155 ~q~erlR~~lee~rqrh~r~ll~av-e~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq------~~A~~nEa 227 (334)
...++++..+.+..+.|.+.|-++- +..+- ++-|.-+..+.++...+..+++.+..++..-. ...+....
T Consensus 19 ~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~---~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~ 95 (127)
T 1ez3_A 19 GFIDKIAENVEEVKRKHSAILASPNPDEKTK---EELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKT 95 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHH
Confidence 4445667777777788887654221 11111 23345555666677778888888877665311 11234455
Q ss_pred HHHHHHHHHHHHHh
Q 019869 228 VVNLLKSNLQQAIS 241 (334)
Q Consensus 228 ~a~~Lr~~LqQ~~~ 241 (334)
.+.+|...+..+..
T Consensus 96 q~~~L~~kf~e~m~ 109 (127)
T 1ez3_A 96 QHSTLSRKFVEVMS 109 (127)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66778888877753
No 110
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=60.66 E-value=11 Score=24.79 Aligned_cols=29 Identities=14% Similarity=0.359 Sum_probs=22.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQMAAE 214 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql~~E 214 (334)
|+.+.|+.++.+..++++|+..+.+|...
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45677888888889999998888777643
No 111
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=60.34 E-value=30 Score=28.42 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q 019869 230 NLLKSNLQQAI 240 (334)
Q Consensus 230 ~~Lr~~LqQ~~ 240 (334)
.-|+.+++.+.
T Consensus 71 e~Lr~e~~~l~ 81 (120)
T 3i00_A 71 EFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45666666553
No 112
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=60.07 E-value=36 Score=26.45 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 196 NMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 196 ~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
+...+..+++.++..|+.|+...+......+..+..|+.-|-++
T Consensus 33 krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34445567777888888888877766666655555555555443
No 113
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=59.86 E-value=39 Score=23.79 Aligned_cols=31 Identities=19% Similarity=0.500 Sum_probs=21.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 184 AKKLQEKDMEIENMNRKNRELIERIKQMAAE 214 (334)
Q Consensus 184 ~~rLReKe~Eie~~~krnaELeErl~ql~~E 214 (334)
..|+++...++..+.++|..|.+-++....|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~e 38 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQ 38 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777788888888777777655543
No 114
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=59.68 E-value=52 Score=27.10 Aligned_cols=81 Identities=19% Similarity=0.340 Sum_probs=39.8
Q ss_pred hhhHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHH
Q 019869 134 LADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQR------HMASFLSAIEKGLAK---KLQEKDMEIENMNRKNREL 204 (334)
Q Consensus 134 l~~~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqr------h~r~ll~ave~~~~~---rLReKe~Eie~~~krnaEL 204 (334)
.-|+|.++ +.=..+-++|+.|..+-...|.+.--. -+..|-.+++...++ ++.+.+.||..++.+..+.
T Consensus 13 C~dGLrAq--~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a 90 (121)
T 3mq7_A 13 ARDGLRAV--MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDA 90 (121)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544 334567788887766655555543211 112233333332222 3444455555555555555
Q ss_pred HHHHHHHHHHHH
Q 019869 205 IERIKQMAAEAQ 216 (334)
Q Consensus 205 eErl~ql~~E~q 216 (334)
.+.+.+|..+++
T Consensus 91 ~ae~erlr~~~~ 102 (121)
T 3mq7_A 91 SAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhch
Confidence 555555555544
No 115
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=59.65 E-value=57 Score=25.03 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=15.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Q 019869 185 KKLQEKDMEIENMNRKNRELIERIK 209 (334)
Q Consensus 185 ~rLReKe~Eie~~~krnaELeErl~ 209 (334)
+++-+|++||..+...|..|.+-+.
T Consensus 41 ~~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 41 KEIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777766666654443
No 116
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=59.62 E-value=2.8 Score=32.32 Aligned_cols=30 Identities=20% Similarity=0.637 Sum_probs=22.6
Q ss_pred cccccccccc---ccceEEecCCCcccchhhHhh
Q 019869 284 QMICRACKAK---EASVLLMPCRHLCLCKDCDVL 314 (334)
Q Consensus 284 ~~~C~iC~~~---~~~vlllPC~HlclC~~C~~~ 314 (334)
...|.+|.+. ++...-++|+|. +|..|...
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 4679999963 343333899999 99999874
No 117
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=59.43 E-value=45 Score=26.50 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=22.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 019869 188 QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQ 238 (334)
Q Consensus 188 ReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ 238 (334)
++.++||.++.++...||. +..++..|+.+| +.|.++|+.
T Consensus 50 ~eL~~EI~~L~~eI~~LE~----iqs~aK~LRnKA-------~~L~~eLe~ 89 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEK----MQNNSKLLRNKA-------VQLESELEN 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHH-------HHHHHHHHH
Confidence 4566677777777766553 333444454444 345555543
No 118
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=59.12 E-value=47 Score=23.86 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=23.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 188 QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRA 222 (334)
Q Consensus 188 ReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A 222 (334)
-+.+.+++.+...|.+|...+..|..|...|....
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777777777777777777666544
No 119
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=58.50 E-value=80 Score=26.32 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=17.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAAEA 215 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~E~ 215 (334)
+.+...|++.+.+++.+|++++.+|++|.
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666665543
No 120
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=57.07 E-value=12 Score=24.57 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=19.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql~ 212 (334)
|+.+.|+-++.+..++++|+..+.+|.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 556667777788888888887766654
No 121
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=56.95 E-value=1.2e+02 Score=33.23 Aligned_cols=94 Identities=10% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 141 ELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKK---LQEKDMEIENMNRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 141 ~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~r---LReKe~Eie~~~krnaELeErl~ql~~E~q~ 217 (334)
.|.....+...-+..+.+.|+..+++..+ ...=+...+..+... +.+.+++++++.+...+||++..++. ..
T Consensus 946 ~L~~~~~~~~~~~~~e~~~L~~~l~~le~--~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~ 1020 (1080)
T 2dfs_A 946 SLLEKMNNLEITYSTETEKLRSDVERLRM--SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HE 1020 (1080)
T ss_dssp -----CHHHHHHHHHHHHHHHHTHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH
Q 019869 218 WHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 218 Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
.+......+.....|+.+++++
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 122
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=56.15 E-value=60 Score=24.18 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 164 VQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 164 lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~ 217 (334)
..+.+..|+..|=..| .+.+.+.+.+...|..|.+.+..|..|...
T Consensus 23 fReRK~~~i~~LE~~v--------~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 23 FRKRKEDHLKALETQV--------VTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554442222 234445555666677777777777777654
No 123
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=55.78 E-value=43 Score=26.46 Aligned_cols=26 Identities=23% Similarity=0.426 Sum_probs=15.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQM 211 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql 211 (334)
++|+...||-++.+....||-+++.|
T Consensus 53 ~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 53 RIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666666665555555555544
No 124
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.60 E-value=1.4e+02 Score=36.83 Aligned_cols=6 Identities=17% Similarity=0.357 Sum_probs=1.0
Q ss_pred CCCccc
Q 019869 60 NKRGRE 65 (334)
Q Consensus 60 ~kr~r~ 65 (334)
|.|.|-
T Consensus 1792 R~R~r~ 1797 (3245)
T 3vkg_A 1792 HNRSAT 1797 (3245)
T ss_dssp TC----
T ss_pred HHHHHH
Confidence 455553
No 125
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.51 E-value=26 Score=26.51 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=9.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH
Q 019869 188 QEKDMEIENMNRKNRELIERIK 209 (334)
Q Consensus 188 ReKe~Eie~~~krnaELeErl~ 209 (334)
++|++||..-..+..+|+.++.
T Consensus 29 ~~K~eELr~kd~~I~eLEk~L~ 50 (72)
T 3nmd_A 29 QEKIEELRQRDALIDELELELD 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 126
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=55.16 E-value=88 Score=25.77 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019869 211 MAAEAQNWHYRAKYNESVVNLLKSNLQ 237 (334)
Q Consensus 211 l~~E~q~Wq~~A~~nEa~a~~Lr~~Lq 237 (334)
|..|...|...-+..++.+..||..-+
T Consensus 76 LqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 76 LEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 333333344444444444555555444
No 127
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=55.06 E-value=1.6e+02 Score=29.88 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=30.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhh---HHHHHHHHHHHHHHHh
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAA--------EAQNWHYRAKYN---ESVVNLLKSNLQQAIS 241 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~--------E~q~Wq~~A~~n---Ea~a~~Lr~~LqQ~~~ 241 (334)
+-....|+..+++..+++..-+.+... -...|+....+. ...++.+.+.++.+..
T Consensus 351 ~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~~~~ 416 (551)
T 2b5u_A 351 YNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAK 416 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhhhhHHHHHHHhhhhhhhhccChhhccchhhhhccchhhhhhhhhhhHHHHHHHHhh
Confidence 344445667777777777666666552 236788744322 2234445555555543
No 128
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=54.56 E-value=23 Score=22.32 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 189 EKDMEIENMNRKNRELIERIKQMAAEA 215 (334)
Q Consensus 189 eKe~Eie~~~krnaELeErl~ql~~E~ 215 (334)
+.|.|+..+...|-.||..+.||+.|+
T Consensus 5 qlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 345566777777777887787777664
No 129
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=54.17 E-value=96 Score=25.93 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 197 MNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 197 ~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
+.....||=+++.+++.|-.++......+.-.++.|+..+..+
T Consensus 63 L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 63 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHH
Confidence 3444555668899999999999999999988999998887666
No 130
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.04 E-value=63 Score=22.89 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 189 EKDMEIENMNRKNRELIERIKQMAAEAQNWHYR 221 (334)
Q Consensus 189 eKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~ 221 (334)
+.+.+++.+...|.+|...+..|..|...|+..
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777776666543
No 131
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=51.00 E-value=36 Score=25.94 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 192 MEIENMNRKNRELIERIKQMAAEAQNWHY 220 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~~E~q~Wq~ 220 (334)
..++.+.+.|..|+.++.+|..|...++.
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666555443
No 132
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=50.00 E-value=1.9e+02 Score=28.46 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=36.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019869 149 FDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESV 228 (334)
Q Consensus 149 iD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~ 228 (334)
+|.++.+..++-....+ ....++--.++...+++..+.+ ++.+.+..+..+|.++++.++.+
T Consensus 30 ~~~~~~l~~~~r~~~~~---~~~l~~~~n~~sk~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~-------------- 91 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKE---INRLRHERNKIAVEIGKRRKKG-EPVDELLAKSREIVKRIGELENE-------------- 91 (455)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTSC-CCTHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 78888776544221111 1112222234444444433332 34555555555666666555433
Q ss_pred HHHHHHHHHHHHhcC
Q 019869 229 VNLLKSNLQQAISQG 243 (334)
Q Consensus 229 a~~Lr~~LqQ~~~~~ 243 (334)
...+..+|+.++...
T Consensus 92 ~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 92 VEELKKKIDYYLWRL 106 (455)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 334556666666544
No 133
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=49.71 E-value=99 Score=24.76 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019869 198 NRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 198 ~krnaELeErl~ql~~E~q~ 217 (334)
..+..+|+..+++|.+|++.
T Consensus 64 ~~~v~eLe~everL~~ENq~ 83 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQ 83 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 44666777777777777763
No 134
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=49.64 E-value=66 Score=22.76 Aligned_cols=24 Identities=4% Similarity=0.097 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 019869 201 NRELIERIKQMAAEAQNWHYRAKY 224 (334)
Q Consensus 201 naELeErl~ql~~E~q~Wq~~A~~ 224 (334)
..+|+.++..++.|+...+.....
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~ 47 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTL 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666644433333
No 135
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=46.81 E-value=26 Score=22.64 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=15.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~ 212 (334)
+-+.|+.++.+..+|.+|+..+.+|.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44556666666777777766665553
No 136
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=46.41 E-value=78 Score=22.65 Aligned_cols=35 Identities=11% Similarity=0.005 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019869 199 RKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLK 233 (334)
Q Consensus 199 krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr 233 (334)
....+|+.++..|..|+..++.....-...+..|+
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777766655544433333333
No 137
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=46.20 E-value=2.1e+02 Score=27.44 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=17.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019869 146 KEEFDQYIKVQEEYLAKGVQDMKQRH 171 (334)
Q Consensus 146 ~~EiD~~ir~q~erlR~~lee~rqrh 171 (334)
..++.++|+.+.++.+..+.+.|++-
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHh
Confidence 34566667777777877777776654
No 138
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=46.16 E-value=1.1e+02 Score=24.18 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 019869 203 ELIERIKQMA 212 (334)
Q Consensus 203 ELeErl~ql~ 212 (334)
+||.|+.+++
T Consensus 71 dLE~RLsKtE 80 (101)
T 1d7m_A 71 ELEARLAKTE 80 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 4445554444
No 139
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.85 E-value=2.7e+02 Score=34.59 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 019869 201 NRELIERIKQMAA 213 (334)
Q Consensus 201 naELeErl~ql~~ 213 (334)
.++|++++++|..
T Consensus 2037 L~~le~~l~~L~~ 2049 (3245)
T 3vkg_A 2037 ITALEKSIATYKE 2049 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 140
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=45.78 E-value=87 Score=26.85 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019869 198 NRKNRELIERIKQMAAEA 215 (334)
Q Consensus 198 ~krnaELeErl~ql~~E~ 215 (334)
.-++..++++++++..|+
T Consensus 109 qlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 109 TIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 141
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=45.73 E-value=1.1e+02 Score=25.72 Aligned_cols=85 Identities=9% Similarity=0.192 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhHHH
Q 019869 155 VQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNW------HYRAKYNESV 228 (334)
Q Consensus 155 ~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~W------q~~A~~nEa~ 228 (334)
....+++..+.+..+.|.+.|..+-.....+ ++-+.-+..+.+....++.+++.|..+...- ....+.....
T Consensus 50 ~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k--~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q 127 (180)
T 1s94_A 50 AMIDKISDNVDAVKKKHSDILSAPQTDDQMK--EELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQ 127 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 3344555556666666766554332221111 2233344455555666777777777654311 1111223345
Q ss_pred HHHHHHHHHHHHh
Q 019869 229 VNLLKSNLQQAIS 241 (334)
Q Consensus 229 a~~Lr~~LqQ~~~ 241 (334)
..+|...+..++.
T Consensus 128 ~~~L~~kf~~~m~ 140 (180)
T 1s94_A 128 YSTISRKFVEVMS 140 (180)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6778887777654
No 142
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=45.63 E-value=97 Score=23.49 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019869 196 NMNRKNRELIERIKQMAAEAQNWHYRAKYNESVV 229 (334)
Q Consensus 196 ~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a 229 (334)
+...+..+++.++..|..|+...+......+..+
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677778888888876555444433333
No 143
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=44.99 E-value=1.3e+02 Score=24.67 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=22.7
Q ss_pred hhhhhHHHHHHhHhhHHHHHHHHHhHHH
Q 019869 132 LSLADNVRTELDRQKEEFDQYIKVQEEY 159 (334)
Q Consensus 132 ~~l~~~l~~~l~rq~~EiD~~ir~q~er 159 (334)
.+.+|-|..+|.|-+.|.|..++.|.++
T Consensus 31 ~~~sDPL~~ELeRLr~~~d~~~K~HE~k 58 (115)
T 3vem_A 31 PVFNDPFLHELEKLRRESENSKKTFEEK 58 (115)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446779999999999999999999665
No 144
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=44.97 E-value=1.6e+02 Score=25.83 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 197 MNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 197 ~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
+.....+|=+++.+|+.|-.++......+.-.++.|+..+..+
T Consensus 63 L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DL 105 (180)
T 1j1e_C 63 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHH
Confidence 3444555668899999999999999999988899998887766
No 145
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=44.58 E-value=68 Score=31.36 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 189 EKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 189 eKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
+.++|++.+.++..+|++.++++..|...-...-...+..--.|.++|+.+...
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345566666666666666666666666655555444445555677777777543
No 146
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.86 E-value=1.9e+02 Score=25.85 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 171 HMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 171 h~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~ 213 (334)
.+.+|-.-++. +.+++...+.+|..+..+..++++.+..+..
T Consensus 91 E~~aL~kEie~-~~~~i~~lE~eile~~e~ie~~~~~l~~~~~ 132 (256)
T 3na7_A 91 ELRSLNIEEDI-AKERSNQANREIENLQNEIKRKSEKQEDLKK 132 (256)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555552 3344555555555554444444444444333
No 147
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=41.70 E-value=1.4e+02 Score=24.35 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=21.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 019869 154 KVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNR 202 (334)
Q Consensus 154 r~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krna 202 (334)
..+.||||+..+...+.|- ..-.+..-+-|.|++.+.++.-
T Consensus 38 ~~ELeRLr~~~d~~~K~HE--------~kklqLkse~e~E~ae~k~KYD 78 (115)
T 3vem_A 38 LHELEKLRRESENSKKTFE--------EKKSILKAELERKMAEVQAEFR 78 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556555444444443 2233333456667777777743
No 148
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=39.96 E-value=37 Score=22.06 Aligned_cols=27 Identities=7% Similarity=0.162 Sum_probs=16.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql~ 212 (334)
|+.+.|+.+|.+..++.+|+..+.+|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455566666677777777776665553
No 149
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=39.47 E-value=38 Score=21.97 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=16.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql~ 212 (334)
|+.+.|.-++.+..++.+|+..+.+|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445556666667777777776665553
No 150
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=39.33 E-value=1.4e+02 Score=32.85 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 189 EKDMEIENMNRKNRELIERIKQMAAE 214 (334)
Q Consensus 189 eKe~Eie~~~krnaELeErl~ql~~E 214 (334)
+++++++++.++..+|++++..+..+
T Consensus 910 ~~e~~l~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 910 EAEEMRVRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 151
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=39.23 E-value=1.4e+02 Score=23.39 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=31.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNWH-------YRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq-------~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
+..+++.||..+.+++.-|++.+.++...-..-+ ..+...|+.+.+|...++.+
T Consensus 38 ~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 38 RSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777666665544332222 23345566777787777644
No 152
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=39.22 E-value=69 Score=27.84 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=14.3
Q ss_pred hhHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHH
Q 019869 145 QKEEFDQYI---KVQEEYLAKGVQDMKQRHMASFL 176 (334)
Q Consensus 145 q~~EiD~~i---r~q~erlR~~lee~rqrh~r~ll 176 (334)
|+.+|+.+. +.+...+|..+..+| ..+++|+
T Consensus 72 Qq~ql~~I~~e~r~~~~~Lr~ql~akr-~EL~aL~ 105 (175)
T 3lay_A 72 QQATAQKIYDDYYTQTSALRQQLISKR-YEYNALL 105 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 444444443 344555555555444 3344444
No 153
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.12 E-value=60 Score=22.84 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 192 MEIENMNRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~~E~q~ 217 (334)
.+++.+...+.+|+.++..|..+.+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777766666554
No 154
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=38.66 E-value=13 Score=35.23 Aligned_cols=43 Identities=19% Similarity=0.417 Sum_probs=32.0
Q ss_pred cccccccccccccceEEec----CCC-cccchhhHhh----CCCCCCCcccc
Q 019869 283 HQMICRACKAKEASVLLMP----CRH-LCLCKDCDVL----VAVCPVCQFVK 325 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllP----C~H-lclC~~C~~~----l~~CPvCr~~i 325 (334)
....|++|+..+.-.++.. =|+ +..|..|... --+||.|....
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESK 232 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCC
Confidence 3568999999998766652 332 3589999864 37999999874
No 155
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=38.40 E-value=45 Score=21.52 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=15.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQM 211 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql 211 (334)
+.+.|.-++.+..++.+|+..+.++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455566666666666666655554
No 156
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=37.75 E-value=37 Score=34.60 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=43.9
Q ss_pred HHHHHHhHhhHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 019869 137 NVRTELDRQKEEFDQYIK-------VQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIK 209 (334)
Q Consensus 137 ~l~~~l~rq~~EiD~~ir-------~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ 209 (334)
..+..|-+--.+-..|++ ++.++|+..-.|.|.+ .-+|+.-..+ -..+-+.+.+...||++|++
T Consensus 275 ~~ak~i~~lc~~~H~ff~~~r~~d~~e~qqm~~~a~e~~~~------~~~e~~~l~~---~~~~~~~~~~~~~~~~~~~~ 345 (575)
T 2i1j_A 275 RVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLA------KQAQREKLQL---EIAARERAEKKQQEYQDRLR 345 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------HHHHHTTCCS---CCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH------HHHHHHHHHH---HHHHHHHHHHhHHHHHHHHH
Confidence 445566666666666664 4567777555443322 2233322111 11122344455566777777
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019869 210 QMAAEAQNWHYRAKYNESVVNLLKSNL 236 (334)
Q Consensus 210 ql~~E~q~Wq~~A~~nEa~a~~Lr~~L 236 (334)
++..|...++......+.+|.-|-.++
T Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~l~e~~ 372 (575)
T 2i1j_A 346 QMQEEMERSQANLLEAQDMILRLEEQL 372 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 777777666666655555555444433
No 157
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=36.89 E-value=48 Score=21.50 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=11.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 019869 188 QEKDMEIENMNRKNRELIERIKQM 211 (334)
Q Consensus 188 ReKe~Eie~~~krnaELeErl~ql 211 (334)
-+.|+-++.+..++.+|+..+.+|
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344444445555555555444444
No 158
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=36.26 E-value=51 Score=21.26 Aligned_cols=25 Identities=4% Similarity=0.214 Sum_probs=13.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQM 211 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql 211 (334)
+.+.|+-++.+..++.+|+..+.+|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344555555555556555555444
No 159
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=35.38 E-value=1.8e+02 Score=23.68 Aligned_cols=65 Identities=9% Similarity=0.171 Sum_probs=30.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 147 EEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 147 ~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~ 217 (334)
..||+ ++..+++||..|+.....+.+. +..++ .++.+.+.|++.-.+...+......+|.+|...
T Consensus 15 ~~Ie~-Lkreie~lk~ele~l~~E~q~~-v~ql~----~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 15 HLIER-LYREISGLKAQLENMKTESQRV-VLQLK----GHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554 4555666666666543333322 22222 234445555555544433333344444454443
No 160
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=35.25 E-value=2.7e+02 Score=27.84 Aligned_cols=61 Identities=15% Similarity=0.309 Sum_probs=29.8
Q ss_pred HHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 148 EFDQYIKVQEEYL--AKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAE 214 (334)
Q Consensus 148 EiD~~ir~q~erl--R~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E 214 (334)
.+|.++.+..++- ...+++.| +-..++...+++..+++ ++++.+..+..+|.++++.++.+
T Consensus 31 ~~~~~~~ld~~~r~~~~~~~~l~-----~~rn~~sk~i~~~k~~~-~~~~~l~~~~~~l~~~i~~le~~ 93 (485)
T 3qne_A 31 LVDEIIAEYKEWVKLRFDLDEHN-----KKLNSVQKEIGKRFKAK-EDAKDLIAEKEKLSNEKKEIIEK 93 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 3889988875532 22222222 22334444444443333 24445555555566666555543
No 161
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=35.08 E-value=1.7e+02 Score=23.24 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=44.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAI 240 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~ 240 (334)
-||++|++..--++-...|.+.+..-.+-.+.|+...++-+..+..|+.+|+.+.
T Consensus 33 ~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 33 SLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777778888888877777788888888898888888888887765
No 162
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=34.99 E-value=1.1e+02 Score=26.53 Aligned_cols=28 Identities=18% Similarity=0.359 Sum_probs=15.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019869 182 GLAKKLQEKDMEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 182 ~~~~rLReKe~Eie~~~krnaELeErl~ql~ 212 (334)
.+..+|.+.|..++.+++ .|+|++++.+
T Consensus 9 e~~e~L~~~e~l~~el~~---tWeeKl~~te 36 (184)
T 4egx_A 9 EAIERLKETEKIIAELNE---TWEEKLRRTE 36 (184)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---HHHHHHHHHH
Confidence 344556665555555443 3566666543
No 163
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=34.87 E-value=59 Score=24.18 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=8.8
Q ss_pred HHHHHHhhHHHHHHHHHHHH
Q 019869 183 LAKKLQEKDMEIENMNRKNR 202 (334)
Q Consensus 183 ~~~rLReKe~Eie~~~krna 202 (334)
....|+.|++-|..+...+.
T Consensus 16 ~~~~i~~Kde~I~eLE~~L~ 35 (67)
T 1zxa_A 16 FAKILMLKEERIKELEKRLS 35 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHH
Confidence 34444555554444444433
No 164
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.35 E-value=2.2e+02 Score=24.33 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=4.0
Q ss_pred HHHHHhHh
Q 019869 138 VRTELDRQ 145 (334)
Q Consensus 138 l~~~l~rq 145 (334)
+.++.+.+
T Consensus 59 ~vs~~~~~ 66 (152)
T 3a7p_A 59 IVSHDDAL 66 (152)
T ss_dssp HHHHHHHH
T ss_pred cccchhHH
Confidence 55555433
No 165
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=33.27 E-value=60 Score=21.03 Aligned_cols=25 Identities=4% Similarity=0.068 Sum_probs=12.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQM 211 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql 211 (334)
+-+.|.-++.+..++.+|+..+.+|
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4444555555555555555544444
No 166
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=33.23 E-value=2.5e+02 Score=27.31 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=27.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 149 FDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAE 214 (334)
Q Consensus 149 iD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E 214 (334)
+|.++.+..++=....+ -...++--.++...+++ .+.++.+.+..+..+|.++++.++.+
T Consensus 27 ~~~~~~~~~~~r~~~~~---~~~l~~~~n~~sk~i~~---~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (421)
T 1ses_A 27 LEALLALDREVQELKKR---LQEVQTERNQVAKRVPK---APPEEKEALIARGKALGEEAKRLEEA 86 (421)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHSSS---SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHHHHHHHHH
Confidence 78888776543221111 11111222333333333 22245555556666666666655433
No 167
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=33.02 E-value=3.6e+02 Score=26.45 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=53.3
Q ss_pred HHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HH
Q 019869 137 NVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIER-------IK 209 (334)
Q Consensus 137 ~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeEr-------l~ 209 (334)
.|+.-|-+|...||.=|+.-...|... +..-.-...++.++.....++-+.+..-|+-+.++...+-|. +.
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~i--sn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~ 101 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQV--ENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASIL 101 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 466678888888888766554444311 223344455666666655444333333233333333322222 22
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 210 QMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 210 ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
.....-+..+..+..+...+..|+..+.++...
T Consensus 102 ~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 102 THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233344455666666666666666665543
No 168
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.79 E-value=1.4e+02 Score=21.52 Aligned_cols=17 Identities=6% Similarity=0.384 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019869 200 KNRELIERIKQMAAEAQ 216 (334)
Q Consensus 200 rnaELeErl~ql~~E~q 216 (334)
+..+|+.++.+|..|+.
T Consensus 31 ~~~~Le~~v~~L~~eN~ 47 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNY 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555444
No 169
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=32.76 E-value=1.7e+02 Score=22.64 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=30.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHH
Q 019869 188 QEKDMEIENMNRKNRELIERIKQMAAEAQNW-------HYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 188 ReKe~Eie~~~krnaELeErl~ql~~E~q~W-------q~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
.+++.||..+.|++.-|++.+..+......- ...+...|+.+.+|...++.+
T Consensus 40 ~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 40 KQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666665555444322211 234456677888888887654
No 170
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=32.74 E-value=2.7e+02 Score=24.91 Aligned_cols=52 Identities=29% Similarity=0.381 Sum_probs=34.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019869 151 QYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQM 211 (334)
Q Consensus 151 ~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql 211 (334)
.|-+.-+|+=|.+|.+...- ...|-..++. |++||..+.+.|.+|.+-+.++
T Consensus 97 ~YWk~lAE~RR~AL~eaLeE-N~~Lh~~ie~--------l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 97 QYWKEVAEKRRKALYEALKE-NEKLHKEIEQ--------KDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp THHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777766543 3344444553 8899999999988887665443
No 171
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=32.41 E-value=16 Score=31.48 Aligned_cols=17 Identities=35% Similarity=0.632 Sum_probs=13.3
Q ss_pred CCCCCCCcccccceEEE
Q 019869 315 VAVCPVCQFVKNASVLV 331 (334)
Q Consensus 315 l~~CPvCr~~i~~~v~v 331 (334)
..+||+|..+......+
T Consensus 153 p~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 153 PEYCPVCGAPKEKFVVF 169 (170)
T ss_dssp CSBCTTTCCBGGGCEEE
T ss_pred CCCCCCCCCCHHHceec
Confidence 45999999998776654
No 172
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=31.76 E-value=1.6e+02 Score=22.08 Aligned_cols=44 Identities=7% Similarity=-0.094 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC
Q 019869 200 KNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQG 243 (334)
Q Consensus 200 rnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~~ 243 (334)
|..+||.++.-.+.--...-.........++.|+.+|..+....
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555544444444444444555566677778887776654
No 173
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=31.64 E-value=1e+02 Score=24.84 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 197 MNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 197 ~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
+.....||=+++.+|+.|-.++......++-.++.|+..+.++
T Consensus 47 L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 47 LRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 3444555668999999999999999999999999999887766
No 174
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=30.88 E-value=1.9e+02 Score=22.68 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=38.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 019869 183 LAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 242 (334)
Q Consensus 183 ~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~ 242 (334)
+..-+++.+.||.++.+...||.+-...+..... ++..+++....+++++...
T Consensus 12 ~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~-------eQge~Id~Ie~nv~~a~~~ 64 (109)
T 3hd7_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVE-------SQGEMIDRIEYNVEHAVDY 64 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHH
Confidence 3344567889999999999999999888886544 5566666677777666543
No 175
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=30.56 E-value=71 Score=20.74 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=15.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQMA 212 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql~ 212 (334)
||.+.|..++.+..++.+|+..+.++.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445555566666666666666555543
No 176
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=30.01 E-value=1.8e+02 Score=22.11 Aligned_cols=24 Identities=17% Similarity=0.475 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 193 EIENMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 193 Eie~~~krnaELeErl~ql~~E~q 216 (334)
-++.+..+|.+||++++.+...-.
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344566777788888877776444
No 177
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=29.82 E-value=26 Score=25.39 Aligned_cols=37 Identities=30% Similarity=0.843 Sum_probs=24.8
Q ss_pred cccccccccccceE---EecCCCcccchhhHhh----CCCCCCCc
Q 019869 285 MICRACKAKEASVL---LMPCRHLCLCKDCDVL----VAVCPVCQ 322 (334)
Q Consensus 285 ~~C~iC~~~~~~vl---llPC~HlclC~~C~~~----l~~CPvCr 322 (334)
..|..|.......- ---|++. +|.+|+.- +..||.|.
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTTC
T ss_pred CcccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCCC
Confidence 35777777654322 1235555 89999874 69999983
No 178
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=29.79 E-value=24 Score=24.77 Aligned_cols=14 Identities=36% Similarity=0.664 Sum_probs=9.0
Q ss_pred CCCCCcccccceEE
Q 019869 317 VCPVCQFVKNASVL 330 (334)
Q Consensus 317 ~CPvCr~~i~~~v~ 330 (334)
.||+|...+..+..
T Consensus 37 ~CP~Cg~~K~~F~~ 50 (52)
T 1yk4_A 37 VCPLCGAPKSEFER 50 (52)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCCCCCCCHHHcEE
Confidence 57777776666554
No 179
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=29.11 E-value=22 Score=24.97 Aligned_cols=13 Identities=46% Similarity=0.843 Sum_probs=7.4
Q ss_pred CCCCCcccccceE
Q 019869 317 VCPVCQFVKNASV 329 (334)
Q Consensus 317 ~CPvCr~~i~~~v 329 (334)
.||+|...+..+.
T Consensus 38 ~CP~Cg~~K~~F~ 50 (52)
T 1e8j_A 38 ACPVCGASKDAFE 50 (52)
T ss_dssp CCSSSCCCTTSCE
T ss_pred cCCCCCCcHHHcE
Confidence 5666666655544
No 180
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=29.06 E-value=2.9e+02 Score=24.18 Aligned_cols=43 Identities=12% Similarity=0.171 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 197 MNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 197 ~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
+.....+|=+++.+|..|-..+......+.-.++.|+..+..+
T Consensus 60 L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDL 102 (182)
T 1ytz_I 60 LQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDL 102 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555668888888898999888888888888887765544
No 181
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=28.66 E-value=21 Score=25.37 Aligned_cols=14 Identities=36% Similarity=0.702 Sum_probs=8.0
Q ss_pred CCCCCcccccceEE
Q 019869 317 VCPVCQFVKNASVL 330 (334)
Q Consensus 317 ~CPvCr~~i~~~v~ 330 (334)
.||+|...+..+..
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (54)
T 4rxn_A 38 VCPLCGVGKDEFEE 51 (54)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHceE
Confidence 56666666555443
No 182
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=28.59 E-value=1.9e+02 Score=21.72 Aligned_cols=24 Identities=13% Similarity=0.421 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 193 EIENMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 193 Eie~~~krnaELeErl~ql~~E~q 216 (334)
-++.+..+|.+||++++.+...-.
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le 31 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLE 31 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344566677777777777765433
No 183
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=28.43 E-value=24 Score=25.05 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=10.3
Q ss_pred CCCCCcccccceEEE
Q 019869 317 VCPVCQFVKNASVLV 331 (334)
Q Consensus 317 ~CPvCr~~i~~~v~v 331 (334)
.||+|...+..+..+
T Consensus 38 ~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 38 VCPDCGVGKIDFEMI 52 (55)
T ss_dssp CCTTTCCCGGGEEEC
T ss_pred cCCCCCCCHHHceec
Confidence 677777777666543
No 184
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=28.33 E-value=75 Score=20.62 Aligned_cols=26 Identities=8% Similarity=0.362 Sum_probs=13.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q 019869 186 KLQEKDMEIENMNRKNRELIERIKQM 211 (334)
Q Consensus 186 rLReKe~Eie~~~krnaELeErl~ql 211 (334)
|+.+.|.-++.+..++.+|+..+.+|
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 34445555556666666665555444
No 185
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.29 E-value=4.6e+02 Score=26.14 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=0.0
Q ss_pred CCCCCCcccc
Q 019869 57 LRPNKRGRET 66 (334)
Q Consensus 57 ~~~~kr~r~~ 66 (334)
.||=-|+||+
T Consensus 20 ~~~~~~~~~~ 29 (464)
T 1m1j_B 20 HRPLDKRQEA 29 (464)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4666778876
No 186
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=27.70 E-value=3.6e+02 Score=24.75 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=63.2
Q ss_pred HHHHHHhHhhHHHHHHHHHh-----------HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 019869 137 NVRTELDRQKEEFDQYIKVQ-----------EEYLA---------KGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIEN 196 (334)
Q Consensus 137 ~l~~~l~rq~~EiD~~ir~q-----------~erlR---------~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~ 196 (334)
.+.-.+.+|..|+|.+-+=| +..+- ..+.+....|...|+..+++ .-++|.+.
T Consensus 29 ~f~Kl~KKQqKEl~~LkKKH~Ke~~~lqK~~~~~~~~~s~~~~~~~kv~el~~~q~~el~~l~~~-------q~~eE~~~ 101 (251)
T 1jad_A 29 LFLKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEMELIHLGEE-------YHDGIRRR 101 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSSCHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 34456788999999888733 22221 13346666666666666663 45677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHH
Q 019869 197 MNRKNRELIERIKQMAAEAQNWHYRAK--YNESVVNLLKSNLQ 237 (334)
Q Consensus 197 ~~krnaELeErl~ql~~E~q~Wq~~A~--~nEa~a~~Lr~~Lq 237 (334)
-.....++.+.++.|..|+|+-|-... .+|.....|+..++
T Consensus 102 k~~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~KELkk~q~ 144 (251)
T 1jad_A 102 KEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLE 144 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999998776554 45555555666554
No 187
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=27.63 E-value=1.4e+02 Score=26.78 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=11.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 019869 147 EEFDQYIKVQEEYLAKGVQDMKQR 170 (334)
Q Consensus 147 ~EiD~~ir~q~erlR~~lee~rqr 170 (334)
.|++.+ ..+.+.+...+++.+.+
T Consensus 59 ~e~~~l-~~~l~~l~~e~~el~d~ 81 (213)
T 4ani_A 59 EELAAA-KAQIAELEAKLSEMEHR 81 (213)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHH
Confidence 566543 44555555555544433
No 188
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=27.51 E-value=40 Score=30.50 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=28.7
Q ss_pred ccccccccccccceEEec-CCCcccchhhHhh------CCCCCCCcccccc
Q 019869 284 QMICRACKAKEASVLLMP-CRHLCLCKDCDVL------VAVCPVCQFVKNA 327 (334)
Q Consensus 284 ~~~C~iC~~~~~~vlllP-C~HlclC~~C~~~------l~~CPvCr~~i~~ 327 (334)
...|.+|++--.--...| |+|. +=..|... -..||.|+.+...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 567888887665544444 6665 55667654 2599999987654
No 189
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.36 E-value=1.7e+02 Score=20.97 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 192 MEIENMNRKNRELIERIKQMAAEAQNWH 219 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~~E~q~Wq 219 (334)
+.++.+..+..+|+.....|..|...|+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555444443
No 190
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=27.17 E-value=30 Score=26.67 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.5
Q ss_pred CCCCCCcccccceEEE
Q 019869 316 AVCPVCQFVKNASVLV 331 (334)
Q Consensus 316 ~~CPvCr~~i~~~v~v 331 (334)
..||+|..++..+..|
T Consensus 61 W~CPvCga~K~~F~~i 76 (81)
T 2kn9_A 61 WSCPDCGAAKSDFEMV 76 (81)
T ss_dssp CCCTTTCCCGGGEEEE
T ss_pred CcCCCCCCCHHHcEEc
Confidence 3799999999888775
No 191
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=26.94 E-value=2.9e+02 Score=23.36 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 157 EEYLAKGVQDMKQRHMASFLSAIE 180 (334)
Q Consensus 157 ~erlR~~lee~rqrh~r~ll~ave 180 (334)
..++-..|.++|.+---.+-.++|
T Consensus 63 Ea~~lk~laekrehe~EvlqKa~E 86 (143)
T 3ryc_E 63 EAELLKHLAEKREHEREVIQKAIE 86 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555444333444444
No 192
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=26.60 E-value=84 Score=29.48 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=28.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 181 KGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 181 ~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~ 217 (334)
.+..++...+++|++.+..++.+|++.+..|+.+...
T Consensus 174 ~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~ 210 (315)
T 2ve7_A 174 SKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERST 210 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444556789999999999999999999776544
No 193
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=26.35 E-value=2.3e+02 Score=22.05 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 190 KDMEIENMNRKNRELIERIKQMAAEAQN 217 (334)
Q Consensus 190 Ke~Eie~~~krnaELeErl~ql~~E~q~ 217 (334)
|...|..+.+..-|.+|-++|+..|.+.
T Consensus 47 rk~~i~~ie~~ldEA~eLl~qMelE~r~ 74 (102)
T 2qyw_A 47 KKKLVRDFDEKQQEANETLAEMEEELRY 74 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556666666677777788887764
No 194
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.21 E-value=2.8e+02 Score=22.94 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=19.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019869 188 QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKY 224 (334)
Q Consensus 188 ReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~ 224 (334)
.+++.|+..+...+..+..++..+..|....+..-..
T Consensus 85 ~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~ 121 (138)
T 3hnw_A 85 ENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINK 121 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555444443333
No 195
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=25.77 E-value=2e+02 Score=23.32 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHHH
Q 019869 191 DMEIENMNRKNRELIERIKQMAA----EAQNWHYRAKYNESVVNLLKSNL 236 (334)
Q Consensus 191 e~Eie~~~krnaELeErl~ql~~----E~q~Wq~~A~~nEa~a~~Lr~~L 236 (334)
..+++++.+.-.+|++.+..-.. +.+..+..+...|.....|+...
T Consensus 19 ~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~f 68 (112)
T 1x79_B 19 NDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGL 68 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555443333 23344444555555444444433
No 196
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=25.30 E-value=27 Score=24.00 Aligned_cols=14 Identities=36% Similarity=0.743 Sum_probs=10.6
Q ss_pred CCCCCcccccceEE
Q 019869 317 VCPVCQFVKNASVL 330 (334)
Q Consensus 317 ~CPvCr~~i~~~v~ 330 (334)
.||+|...+..+..
T Consensus 32 ~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 32 CCPVCGVSKDQFSP 45 (46)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHcEe
Confidence 78988888776653
No 197
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=25.19 E-value=2.4e+02 Score=21.80 Aligned_cols=66 Identities=12% Similarity=0.205 Sum_probs=38.2
Q ss_pred hhhHHHHHHhHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 019869 134 LADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIER 207 (334)
Q Consensus 134 l~~~l~~~l~rq~~EiD~~ir~q~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeEr 207 (334)
++-.+..+|.+...+--.||.. |+..|++++-.-.-++++--+ +.||+..+++..+.++.+-|-+.
T Consensus 19 ~P~G~~~~lrq~I~DKQ~~i~~----Lt~eLq~A~~eaNpaeIA~~~----~~L~qAraDL~~l~r~~av~g~E 84 (90)
T 4b6x_A 19 CPRGAGAALRQEIEDKQLMVNN----LTDELQDAIDEANPAEIANTS----QQLRHARADLADLQRRFAVLRNE 84 (90)
T ss_dssp ---CTTHHHHHHHHHHHHHHHH----HHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHH----HHHHHHHHHHccCHHHHHhHH----HHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555677777766665555544 566667776655555555544 45666666666666665555443
No 198
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=24.55 E-value=1.7e+02 Score=23.37 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 197 MNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 197 ~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
+.....||=+++.+|+.|-.++......++-.++.|+..+.++
T Consensus 47 L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 47 LREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444555668999999999999999999988888888877655
No 199
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=24.22 E-value=1.6e+02 Score=22.69 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 019869 198 NRKNRELIERIKQMA 212 (334)
Q Consensus 198 ~krnaELeErl~ql~ 212 (334)
.++|.+|...++++.
T Consensus 51 e~rn~eL~~e~~~l~ 65 (81)
T 1wt6_A 51 EARNRDLEAHVRQLQ 65 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 200
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.20 E-value=5.4e+02 Score=25.63 Aligned_cols=36 Identities=6% Similarity=-0.057 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC
Q 019869 208 IKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQG 243 (334)
Q Consensus 208 l~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~~ 243 (334)
...+..|...-....+..+.....+..+|+.++...
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334455555555555566666666777776666544
No 201
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=23.99 E-value=2.4e+02 Score=21.42 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019869 199 RKNRELIERIKQMAAEAQNWH 219 (334)
Q Consensus 199 krnaELeErl~ql~~E~q~Wq 219 (334)
+.-.+|++...++..|....+
T Consensus 35 ~~rkele~~~~~l~~ek~~L~ 55 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLF 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555554433
No 202
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=23.52 E-value=29 Score=25.83 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=11.3
Q ss_pred CCCCCcccccceEEE
Q 019869 317 VCPVCQFVKNASVLV 331 (334)
Q Consensus 317 ~CPvCr~~i~~~v~v 331 (334)
.||+|..++..+..+
T Consensus 42 ~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 42 MCPACRSPKNQFKSI 56 (70)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCCCCCCCHHHceEc
Confidence 688888887776654
No 203
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=23.04 E-value=2.3e+02 Score=27.47 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=7.4
Q ss_pred HHHHHHHhHHH
Q 019869 149 FDQYIKVQEEY 159 (334)
Q Consensus 149 iD~~ir~q~er 159 (334)
+|.++.+..++
T Consensus 29 ~~~~~~~~~~~ 39 (425)
T 2dq3_A 29 VDKVLELDKRR 39 (425)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67877776544
No 204
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=23.02 E-value=2.4e+02 Score=21.08 Aligned_cols=55 Identities=15% Similarity=0.334 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 162 KGVQDMKQRHMASFLSAIEKGLA-----------KKLQEKDMEIENMNRKNRELIERIKQMAAEAQ 216 (334)
Q Consensus 162 ~~lee~rqrh~r~ll~ave~~~~-----------~rLReKe~Eie~~~krnaELeErl~ql~~E~q 216 (334)
-.+|..|+.|.+..+.++-..+- ..|+.+-+=|..+..++.+|++...+|..|..
T Consensus 6 N~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 6 NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888776542 33555555555555555555555555554443
No 205
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=22.76 E-value=1.1e+02 Score=24.58 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 196 NMNRKNRELIERIKQMAAEAQNWH 219 (334)
Q Consensus 196 ~~~krnaELeErl~ql~~E~q~Wq 219 (334)
+..+++..|++.+.+++.|-..|+
T Consensus 93 ~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 93 KEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445556666777777777765
No 206
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=22.44 E-value=2.2e+02 Score=25.21 Aligned_cols=38 Identities=13% Similarity=0.042 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019869 192 MEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVV 229 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a 229 (334)
+=|+.+.++...|++.-..+..|.++|...-.+-++.+
T Consensus 19 ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V 56 (190)
T 3thf_A 19 ELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKL 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34556666666666666666666666666555554433
No 207
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=22.21 E-value=33 Score=26.77 Aligned_cols=31 Identities=19% Similarity=0.600 Sum_probs=24.6
Q ss_pred cccccccccccccceEEecCC----CcccchhhHhh
Q 019869 283 HQMICRACKAKEASVLLMPCR----HLCLCKDCDVL 314 (334)
Q Consensus 283 ~~~~C~iC~~~~~~vlllPC~----HlclC~~C~~~ 314 (334)
....|.+|.++--+.-|+-|- |. +|-.|...
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~ 48 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRE 48 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCe-eeccccHH
Confidence 356899999998888888884 44 89999763
No 208
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.78 E-value=3.8e+02 Score=23.66 Aligned_cols=52 Identities=25% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019869 181 KGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNL 236 (334)
Q Consensus 181 ~~~~~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~L 236 (334)
......|..|+.||+.+.++.+.|+++.+ .++.-...+.++......|-..|
T Consensus 30 ~~L~~ql~~k~~ei~~L~~ql~sl~~~~~----~~~~~~~~~~e~i~i~~DL~e~L 81 (190)
T 4emc_A 30 FVLSEKLDTKATEIKQLQKQIDSLNAQVK----ELKTQTSQQAENSEVIKDLYEYL 81 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhhHHHHHHHhhhHHHHHHHHc
No 209
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=21.76 E-value=5.7e+02 Score=25.02 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019869 157 EEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 157 ~erlR~~lee~rqrh~r~ll~ave~~~~~rLReKe~Eie~~~krnaELeErl~ql~~ 213 (334)
+++-+.+|+|..+- ..++...+. .+++.+..++....+..+|++.+.++..
T Consensus 83 ~q~Skkml~~~~~~--~~~~~~~~~----~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 83 TLKSRKMLEEIMKY--EASILTHDS----SIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--HHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554432 444444443 2344444555556666666666655543
No 210
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=21.72 E-value=2.3e+02 Score=25.56 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019869 194 IENMNRKNRELIERIKQMAA 213 (334)
Q Consensus 194 ie~~~krnaELeErl~ql~~ 213 (334)
+++++.|+.+||++++.|..
T Consensus 74 ~~~LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQLMD 93 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666665553
No 211
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=21.69 E-value=6.5e+02 Score=25.58 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=12.3
Q ss_pred HHHHhhHHHHHH-HHHHHHHHHHHHHHH
Q 019869 185 KKLQEKDMEIEN-MNRKNRELIERIKQM 211 (334)
Q Consensus 185 ~rLReKe~Eie~-~~krnaELeErl~ql 211 (334)
+.|+++..+.+. +..+-..++|.++||
T Consensus 504 ~~l~~~~~~~~~~~~~~~~~~~e~~~ql 531 (592)
T 1f5n_A 504 KMLHEMQRKNEQMMEQKERSYQEHLKQL 531 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333 333344455555553
No 212
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=21.68 E-value=3.7e+02 Score=23.83 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=14.9
Q ss_pred hhhHHHHHHhHhhHHHHHHHHHhHHHHH
Q 019869 134 LADNVRTELDRQKEEFDQYIKVQEEYLA 161 (334)
Q Consensus 134 l~~~l~~~l~rq~~EiD~~ir~q~erlR 161 (334)
..+++...+.++-.|+=.-+.--.+.||
T Consensus 100 y~~el~~~~~~~~eelr~~L~P~~eel~ 127 (243)
T 2a01_A 100 YLDDFQKKWQEEMELYRQKVEPLRAELQ 127 (243)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4556666666665555544444444443
No 213
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=20.90 E-value=3.4e+02 Score=22.12 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=20.4
Q ss_pred HHHHHHhHhhHHHHHHHHHhHHHHH
Q 019869 137 NVRTELDRQKEEFDQYIKVQEEYLA 161 (334)
Q Consensus 137 ~l~~~l~rq~~EiD~~ir~q~erlR 161 (334)
++.+.|.+-..|++++.+.+..|..
T Consensus 6 ~i~~~l~~Leae~q~L~~~E~qry~ 30 (119)
T 3etw_A 6 SLVGELQALDAEYQNLANQEEARFN 30 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888899999988877775
No 214
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.69 E-value=24 Score=30.68 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=12.1
Q ss_pred CCCCCCcccccceEE
Q 019869 316 AVCPVCQFVKNASVL 330 (334)
Q Consensus 316 ~~CPvCr~~i~~~v~ 330 (334)
..||+|..++..+..
T Consensus 172 ~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 172 ELCPACAHPKAHFEL 186 (191)
T ss_dssp SBCTTTCCBGGGEEE
T ss_pred CCCCCCcCCHHHHHh
Confidence 499999999877654
No 215
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.59 E-value=3.3e+02 Score=21.82 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=36.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019869 185 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVV 229 (334)
Q Consensus 185 ~rLReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a 229 (334)
+-|.+...+|+.+..+..+|+..+..++.|..-+-.+-+.-|..+
T Consensus 11 ~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLc 55 (106)
T 4e61_A 11 AELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILV 55 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777889999999999999999999999887666666665554
No 216
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.16 E-value=86 Score=22.11 Aligned_cols=9 Identities=11% Similarity=0.604 Sum_probs=5.8
Q ss_pred HHHHHHHHH
Q 019869 147 EEFDQYIKV 155 (334)
Q Consensus 147 ~EiD~~ir~ 155 (334)
.|+|.||..
T Consensus 23 ~EVD~FLd~ 31 (57)
T 2wuj_A 23 DEVNEFLAQ 31 (57)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 577777654
No 217
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=20.15 E-value=4e+02 Score=22.59 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=23.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019869 187 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 239 (334)
Q Consensus 187 LReKe~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~ 239 (334)
|+..+.--++...+-..++++|+.|..-...--.+|...+..+..|..+++.+
T Consensus 58 lKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~l 110 (155)
T 2efr_A 58 LKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL 110 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444555555555555554444
No 218
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.11 E-value=3.4e+02 Score=21.76 Aligned_cols=89 Identities=13% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCcccCCCCCCCCcccchhhhhcccCCCCC
Q 019869 192 MEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQGADQGKEGFGDSEVDDAASYINTNNYLTV 271 (334)
Q Consensus 192 ~Eie~~~krnaELeErl~ql~~E~q~Wq~~A~~nEa~a~~Lr~~LqQ~~~~~~~~~~eG~gdsE~dDa~S~cd~~~~~~~ 271 (334)
.|...+..+-...|..+..|..+....+..-.+.+.....|....+-+. .+.....-..|..
T Consensus 4 ~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq---------------~~~~~~~~~~W~~--- 65 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ---------------IKHTQALNRKWAE--- 65 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHCCCCC---
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc---------------ccccccCCCcccc---
Q ss_pred CCCCCCccccccccccccccccccceEEe-------cCCCcccchhh
Q 019869 272 PSGPGKSISRNHQMICRACKAKEASVLLM-------PCRHLCLCKDC 311 (334)
Q Consensus 272 ~~~~~~~~~~~~~~~C~iC~~~~~~vlll-------PC~HlclC~~C 311 (334)
......|.+|...+. ++ -||+. +|..|
T Consensus 66 ---------d~~~~~C~~C~~~Fs---~~~RrHHCR~CG~v-fC~~C 99 (125)
T 1joc_A 66 ---------DNEVQNCMACGKGFS---VTVRRHHCRQCGNI-FCAEC 99 (125)
T ss_dssp ---------GGGCCBCTTTCCBCC---SSSCCEECTTTCCE-ECGGG
T ss_pred ---------CCCCCCCcCcCCccc---cccccccCCCCCeE-EChHH
Done!