Query 019870
Match_columns 334
No_of_seqs 120 out of 142
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 08:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_O Photosystem II manganes 100.0 1E-122 4E-127 848.6 20.7 232 100-334 1-242 (243)
2 3szh_A Avidin/streptavidin; hi 47.1 23 0.00078 29.9 4.6 38 287-330 20-58 (122)
3 2y32_A BLR5658 protein, bradav 31.1 36 0.0012 29.2 3.4 39 287-329 14-52 (138)
4 2c1s_A Biotin binding protein 29.5 30 0.001 29.2 2.5 22 287-309 18-39 (126)
5 3s8i_A Protein DDI1 homolog 1; 25.7 22 0.00075 29.7 1.1 19 195-213 123-142 (148)
6 2o3b_B Endonuclease, sugar-non 19.6 94 0.0032 26.5 3.8 33 271-304 95-130 (136)
7 1qfh_A Protein (gelation facto 18.9 4.1E+02 0.014 22.2 8.1 74 140-219 114-195 (212)
8 3ckm_A YRAM (HI1655), LPOA; pe 14.7 1.2E+02 0.004 26.5 3.3 35 169-211 284-318 (327)
9 2r39_A FIXG-related protein; s 13.0 2.6E+02 0.009 21.7 4.7 23 196-218 75-101 (118)
10 2yma_A YOS9P, protein OS-9 hom 12.7 1.4E+02 0.0048 26.4 3.2 43 143-194 84-127 (161)
No 1
>3arc_O Photosystem II manganese-stabilizing polypeptide; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_O* 2axt_O* 3bz2_O* 3prq_O* 3prr_O* 1s5l_O* 3kzi_O* 3a0b_O* 3a0h_O*
Probab=100.00 E-value=1.1e-122 Score=848.62 Aligned_cols=232 Identities=52% Similarity=0.901 Sum_probs=224.2
Q ss_pred ccceeeeeceeecCCCCCcCCCCc-ceeecC-CceeeeccccccceEEEeeeecCCCCCCCcccceeeeeeeeeccceee
Q 019870 100 SKTYMEVKGTGTANQCPTIDGGVD-SFAFKP-GKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEG 177 (334)
Q Consensus 100 ~ltY~qVkgTGlAN~CP~l~~~~~-~i~l~~-G~Y~l~~lClEPtsf~VkeE~~~K~~~~eFv~tKLmTR~TyTLd~I~G 177 (334)
+|||+||||||+||+||+|+++++ +|+|++ |+|+|++||||||+|+||||+.+||+++|||+||||||+|||||||+|
T Consensus 1 ~ltY~~vkgTGlAN~CP~l~~~~~g~i~l~~~g~y~~~~~ClePtsf~Vkee~~~k~~~~eFv~tKlmTR~TyTLd~i~G 80 (243)
T 3arc_O 1 TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQG 80 (243)
T ss_dssp CCCHHHHTTSSGGGSCCCCCTTCBCCEECCTTSCEEEEEEEEEEEEEEEECCCCSSCSCCCEEECEECSCSCCCEEEEEE
T ss_pred CCchhheeceeecccCCCCCCCCCCceeeCCCCceEeeeeccCCcEEEEEeeccCCCCcccceeeeEEEeeeeeehheeE
Confidence 466777999999999999988775 899988 499999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCeeEEEecCeeeeeeeeecCCCceeeeEEEecceeeccCC--------ccccceeeccccCCCCCCCCCCCC
Q 019870 178 PFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKP--------ENFGGEFLVPSYRGSSFLDPKGRG 249 (334)
Q Consensus 178 ~l~v~~dG~ltF~E~dGiDya~iTVQlPGGErVPFLFTvK~LvA~~~~--------~~F~G~F~VPSYRgs~FLDPKGRG 249 (334)
+|+|++||+|+|+|+|||||||+|||||||||||||||||+|+|++++ +.|+|+|+||||||++||||||||
T Consensus 81 ~l~v~~dG~l~f~E~dGiDfa~~TVqlPGGErVPFlFTvK~LvA~~~~~~~si~~s~~f~G~f~VPSYRgs~FLDPKGRG 160 (243)
T 3arc_O 81 ELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRG 160 (243)
T ss_dssp EEEECTTSCEEEEEEEEECEEEEEEECTTSCEEEEEEECTTCEEECCSCCSEECTTCEEEEEEEEECSSCTTCCCTTSBC
T ss_pred EEEECCCCceEEEEecCeecceEEEEcCCCcccceEeeehhheeeccccccccccccccceeEeccccccccccCCCcCC
Confidence 999999999999999999999999999999999999999999999986 569999999999999999999999
Q ss_pred CCcccccceeccCCCCCChhHHhhhhcccccccceeEEEEEEeecCCCceeeEEEeEeCCCCCCCCCCCCcceEEEEEEE
Q 019870 250 GSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESLQPSDTDMGAKVPKDVKIQGIWY 329 (334)
Q Consensus 250 ~sTGYD~AvaLpa~g~~d~eeL~kEN~K~~~~~~G~i~l~V~kVd~~TGEiaGvF~S~QpSDTDmGaK~PkdVki~GifY 329 (334)
++||||||||||| + |+|||+|||+|++++++|+|+|+|+|||++||||+|||+|+||||||||||+||||||+|+||
T Consensus 161 ~~tGYD~AvaLpA-~--d~eel~keN~K~~~~~~G~i~l~V~kvd~~TGEiaGvF~s~QpSDTDlGak~pkdVki~G~~Y 237 (243)
T 3arc_O 161 LASGYDSAIALPQ-A--KEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFY 237 (243)
T ss_dssp SSSSBSSCTTSTT-S--CSGGGHHHHSCCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEECCCTTTTSCCCEEEEEEEEE
T ss_pred CCcccccceeccc-C--ChHHHhhhhccccccccceEEEEEEeeCCCCceEEEEEEeeCCCCcccCCCCCceEEEEEEEE
Confidence 9999999999999 3 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC
Q 019870 330 AQLEQ 334 (334)
Q Consensus 330 grl~~ 334 (334)
|||++
T Consensus 238 ~rl~~ 242 (243)
T 3arc_O 238 ASIEP 242 (243)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99974
No 2
>3szh_A Avidin/streptavidin; high affinity systems, biotin, shwanav biotin-binding protein; 1.07A {Shewanella denitrificans} PDB: 3szi_A 3szj_A* 3t2x_A 3t2w_A
Probab=47.06 E-value=23 Score=29.92 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=27.2
Q ss_pred EEEEEeecCCCceeeEEEeEeCCCCC-CCCCCCCcceEEEEEEEE
Q 019870 287 TLSVTKSKPETGEVIGVFESLQPSDT-DMGAKVPKDVKIQGIWYA 330 (334)
Q Consensus 287 ~l~V~kVd~~TGEiaGvF~S~QpSDT-DmGaK~PkdVki~GifYg 330 (334)
+|.|..||. .|+|.|.|.+-=. |+ +-|.+-| |.|.++|
T Consensus 20 ~m~I~~~~~-~G~itGtY~Tav~-~s~~~g~~~P----l~G~~~g 58 (122)
T 3szh_A 20 TLYINSINA-QGELTGSYINRAA-GFACQNSPYP----VNGWVFG 58 (122)
T ss_dssp EEEEEEECT-TCEEEEEEEBCCT-TCSSBSSCEE----EEEEEET
T ss_pred EEEEEEeCC-CCEEEEEEEcccC-CCCCCCCeee----eEEEecC
Confidence 477888885 9999999998743 44 3344444 8888764
No 3
>2y32_A BLR5658 protein, bradavidin; biotin-binding protein; 1.78A {Bradyrhizobium japonicum}
Probab=31.12 E-value=36 Score=29.16 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=28.9
Q ss_pred EEEEEeecCCCceeeEEEeEeCCCCCCCCCCCCcceEEEEEEE
Q 019870 287 TLSVTKSKPETGEVIGVFESLQPSDTDMGAKVPKDVKIQGIWY 329 (334)
Q Consensus 287 ~l~V~kVd~~TGEiaGvF~S~QpSDTDmGaK~PkdVki~GifY 329 (334)
.|.|..||..+|+|.|.|.+-=.+ +- -....-.|.|.++
T Consensus 14 ~mtI~av~~~~G~itGtY~Tav~~-s~---~~~~~~pl~G~~~ 52 (138)
T 2y32_A 14 TLAITSFNSNTGAITGTYTNNAAN-SC---DEGKPQGVTGWLA 52 (138)
T ss_dssp EEEEEEECTTTCEEEEEEECCCTT-CT---TTTCCEEEEEEEE
T ss_pred EEEEEEccCCCCEEEEEEeccccc-cC---CCCCCcceEEEee
Confidence 588999999999999999986443 31 1334457888877
No 4
>2c1s_A Biotin binding protein A; HET: BSO; 1.75A {Gallus gallus} PDB: 2c1q_A*
Probab=29.52 E-value=30 Score=29.15 Aligned_cols=22 Identities=9% Similarity=0.338 Sum_probs=18.8
Q ss_pred EEEEEeecCCCceeeEEEeEeCC
Q 019870 287 TLSVTKSKPETGEVIGVFESLQP 309 (334)
Q Consensus 287 ~l~V~kVd~~TGEiaGvF~S~Qp 309 (334)
.|.|.+|| ++|+|.|.|.+-=.
T Consensus 18 ~mtI~~v~-~~G~itG~Y~Tav~ 39 (126)
T 2c1s_A 18 NMTISALD-VAGTFSGSYQTAVT 39 (126)
T ss_dssp EEEECCCC-TTSEEEEEEECSCC
T ss_pred EEEEEEeC-CCCEEEEEEECCcc
Confidence 58899999 99999999987544
No 5
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=25.71 E-value=22 Score=29.66 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.2
Q ss_pred eeeeeeeeecCC-CceeeeE
Q 019870 195 IDYAAVTVQLPG-GERVPFL 213 (334)
Q Consensus 195 iDya~iTVQlPG-GErVPFL 213 (334)
|||.--++.+.. ||+||||
T Consensus 123 ID~~~~~L~l~~~~~~~pfl 142 (148)
T 3s8i_A 123 IDLKKNVLVIGTTGTQTYFL 142 (148)
T ss_dssp EETTTTEEECTTTCCEEECC
T ss_pred EEcCCCEEEEccCCeEEeec
Confidence 788888888875 6999998
No 6
>2o3b_B Endonuclease, sugar-non-specific nuclease inhibitor; metal complex, non-specific NU hydrolase-hydrolase inhibitor complex; HET: MES; 2.30A {Nostoc SP} SCOP: d.221.1.1 PDB: 1j57_A 1ktu_A
Probab=19.62 E-value=94 Score=26.51 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=28.7
Q ss_pred Hhhhh---cccccccceeEEEEEEeecCCCceeeEEE
Q 019870 271 LAKEN---IKNTSSSTGKITLSVTKSKPETGEVIGVF 304 (334)
Q Consensus 271 L~kEN---~K~~~~~~G~i~l~V~kVd~~TGEiaGvF 304 (334)
..|+| +|+|.++.-+|..=|--.+++ |+++|+-
T Consensus 95 ~lk~~l~evkVYRVg~~~ve~yIlG~~~~-G~lvGl~ 130 (136)
T 2o3b_B 95 VIKSNLKNPQVYRLGEVELDVYVIGETPA-GNLAGIS 130 (136)
T ss_dssp HHHHHSEEEEEEEESSSEEEEEEEEECTT-SCEEEEE
T ss_pred HHHHhcccceEEEECCEEEEEEEEEecCC-CCEEEEE
Confidence 44666 899999999999999999999 9999975
No 7
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10
Probab=18.91 E-value=4.1e+02 Score=22.25 Aligned_cols=74 Identities=20% Similarity=0.227 Sum_probs=42.4
Q ss_pred ccceEEEeeeecCCC---CCCCcccceeeeeeeeeccceeeeeeeCCCC--CeeEEEecCeeeeeeeeecCCCcee---e
Q 019870 140 EPTSFTVKAESVNKN---APPDFQNTKLMTRLTYTLDEIEGPFEVSPDG--TIKFVEKDGIDYAAVTVQLPGGERV---P 211 (334)
Q Consensus 140 EPtsf~VkeE~~~K~---~~~eFv~tKLmTR~TyTLd~I~G~l~v~~dG--~ltF~E~dGiDya~iTVQlPGGErV---P 211 (334)
+|.+|+|.......+ ...+....+|.... ..+.+.+.-+.|| .++|.-..-=+| -+.|++ +|+.| |
T Consensus 114 ~~~~f~V~~~D~~G~~~~~G~~~l~v~i~~p~----g~~~~~v~d~~dGty~v~y~p~~~G~y-~v~V~~-~g~~I~gSP 187 (212)
T 1qfh_A 114 GSFTFTVAAKNKKGEVKTYGGDKFEVSITGPA----EEITLDAIDNQDGTYTAAYSLVGNGRF-STGVKL-NGKHIEGSP 187 (212)
T ss_dssp EEEEEEEECBCTTSSBCSSCCCCEEEEEEECC----SEEEEEEEECSSSEEEEEEEEESSEEE-EEEEEE-TTEECBTCS
T ss_pred EEEEEEEEEeccCCCEeecCCCcEEEEEECCC----CceeeEEEECCCCEEEEEEEcCCCEEE-EEEEEE-CCEECCCCC
Confidence 788888854432221 22334444444322 2566777667788 555655444444 467777 56654 7
Q ss_pred eEEEecce
Q 019870 212 FLFTIKQL 219 (334)
Q Consensus 212 FLFTvK~L 219 (334)
|.+.|.+-
T Consensus 188 F~v~V~~~ 195 (212)
T 1qfh_A 188 FKQVLGNP 195 (212)
T ss_dssp EEEEESCG
T ss_pred eEEEEcCC
Confidence 88888553
No 8
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=14.66 E-value=1.2e+02 Score=26.46 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=22.7
Q ss_pred eeeccceeeeeeeCCCCCeeEEEecCeeeeeeeeecCCCceee
Q 019870 169 TYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVP 211 (334)
Q Consensus 169 TyTLd~I~G~l~v~~dG~ltF~E~dGiDya~iTVQlPGGErVP 211 (334)
.+.++++.|.|+++++|.+. -+..=.|+-+|.-||
T Consensus 284 ~~~f~G~tG~i~fd~~G~~~--------r~l~~~~~~~G~~vp 318 (327)
T 3ckm_A 284 GYRLSGLTGILSADTNCNVE--------RDMTWYQYQDGAIVP 318 (327)
T ss_dssp TCCEEETTEEEEECTTCBEE--------EECEEEEEETTEEEE
T ss_pred CCCceeceEEEEECCCCCCc--------cccEEEEEECCEEEE
Confidence 45677888999998888642 122333444787776
No 9
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=12.97 E-value=2.6e+02 Score=21.75 Aligned_cols=23 Identities=4% Similarity=0.042 Sum_probs=16.0
Q ss_pred eeeeeeeecCCCc----eeeeEEEecc
Q 019870 196 DYAAVTVQLPGGE----RVPFLFTIKQ 218 (334)
Q Consensus 196 Dya~iTVQlPGGE----rVPFLFTvK~ 218 (334)
--.++.|.+|... .-|+-|.|++
T Consensus 75 ~~~~v~v~~~~~~~~~~~~~i~f~v~~ 101 (118)
T 2r39_A 75 LNLPMSLGADPDKLNSAITTIQFILTD 101 (118)
T ss_dssp EEEEEEEEECGGGCSSSEEEEEEEEEE
T ss_pred EEEEEEEEEChHHccCCceeEEEEEEe
Confidence 3447888776643 5788888875
No 10
>2yma_A YOS9P, protein OS-9 homolog; carbohydrate binding protein, quality control, endoplasmic reticulum-associated protein degradation; 2.54A {Saccharomyces cerevisiae}
Probab=12.69 E-value=1.4e+02 Score=26.39 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=33.3
Q ss_pred eEEEeeeecCCCCCCCcccceeeeeeeeecc-ceeeeeeeCCCCCeeEEEecC
Q 019870 143 SFTVKAESVNKNAPPDFQNTKLMTRLTYTLD-EIEGPFEVSPDGTIKFVEKDG 194 (334)
Q Consensus 143 sf~VkeE~~~K~~~~eFv~tKLmTR~TyTLd-~I~G~l~v~~dG~ltF~E~dG 194 (334)
+|++-.+.+..+ ++++||+-..|+ ..+.++..+. .|+|.|+.|
T Consensus 84 ~ftW~adVVD~~-------G~~lt~l~l~i~~~~~AeI~~d~--~l~F~~~~g 127 (161)
T 2yma_A 84 SCVWLAEVVDMK-------DRFQTTLSLNILNSQRAEIFFNK--TFTFNEDNG 127 (161)
T ss_dssp EEEEEEEEECTT-------CCEEEEEEEEECSSSCEEEEEET--TCCCCTTCC
T ss_pred eEEEEEEEEecC-------CCEEEEEEEEecCCCeEEEEEee--eEEecCCCC
Confidence 677776776654 589999999998 6788998876 488886555
Done!