BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019871
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTE 140
D G ++ IA GG+A + G QVGD+VL+ + V TE
Sbjct: 37 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTE 73
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
R GG Y+ AI P G+A+ G GD+VLA + V
Sbjct: 30 RHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGV 63
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
R GG Y+ AI P G+A+ G GD+VLA + V
Sbjct: 35 RHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGV 68
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
R GG Y+ AI P G+A+ G GD+VLA + V
Sbjct: 38 RHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGV 71
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
D Y+ +I GG+A K G Q+GDK+LA ++V
Sbjct: 32 DNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSV 64
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 36.6 bits (83), Expect = 0.023, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
R GG Y+ A+ P G+A+ G GD+VLA + V
Sbjct: 31 RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 64
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 36.2 bits (82), Expect = 0.025, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
R GG Y+ A+ P G+A+ G GD+VLA + V
Sbjct: 31 RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 64
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 36.2 bits (82), Expect = 0.025, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
D Y+ I GG+A K G Q+GDK+LA ++V
Sbjct: 32 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 64
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 36.2 bits (82), Expect = 0.029, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
R GG Y+ A+ P G+A+ G GD+VLA + V
Sbjct: 40 RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 73
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
D Y+ I GG+A K G Q+GDK+LA ++V
Sbjct: 183 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 215
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 96 GLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G G DG G +I I GG AD +G + GD++L+ + V
Sbjct: 321 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGV 362
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 102 GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA 145
G D +I I PGG+A + G +V D +L + V E+ +A
Sbjct: 86 GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSA 129
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 35.8 bits (81), Expect = 0.037, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI 141
D Y+ I GG+A K G Q+GDK+LA ++V E+
Sbjct: 27 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEV 64
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 35.4 bits (80), Expect = 0.041, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI 141
D Y+ I GG+A K G Q+GDK+LA ++V E+
Sbjct: 32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEV 69
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 35.4 bits (80), Expect = 0.045, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI 141
D Y+ I GG+A K G Q+GDK+LA ++V E+
Sbjct: 32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEV 69
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 35.0 bits (79), Expect = 0.052, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
D Y+ I GG+A K G Q+GDK+LA ++V
Sbjct: 32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 35.0 bits (79), Expect = 0.063, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI 141
D Y+ I GG+A K G Q+GDK+LA + V E+
Sbjct: 31 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEV 68
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
D Y+ I GG+A K G Q+GDK+LA ++V
Sbjct: 136 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 168
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 34.7 bits (78), Expect = 0.079, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI 141
D Y+ I GG+A K G Q+GDK+LA + V E+
Sbjct: 28 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEV 65
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 34.7 bits (78), Expect = 0.082, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI 141
D Y+ I GG+A K G Q+GDK+LA + V E+
Sbjct: 40 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEV 77
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
D Y+ I GG+A K G Q+GDK+LA ++V
Sbjct: 126 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 158
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
D Y+ I GG+A K G Q+GDK+LA ++V
Sbjct: 129 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 161
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 34.3 bits (77), Expect = 0.091, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI 141
D Y+ I GG+A K G Q+GDK+LA + V E+
Sbjct: 37 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEV 74
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 34.3 bits (77), Expect = 0.095, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI 141
D Y+ I GG+A K G Q+GDK+LA + V E+
Sbjct: 38 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEV 75
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 34.3 bits (77), Expect = 0.095, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 96 GLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVL 131
G G+ G + I PGG AD+ G Q GD +L
Sbjct: 29 GFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHIL 64
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC-CYSK 264
+L R G+Y A K+ESV+ ++P+ E +V S C C+SK
Sbjct: 266 ELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK 307
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL 265
+EG +L++ G Y A + LG TP++ +V N A C+ KL
Sbjct: 33 KEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL 78
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134
D YI I GG+A K G Q+GD++LA +
Sbjct: 32 DNSIYITKIIEGGAAQKDGRLQIGDRLLAVN 62
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 96 GLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G+ G++ G I I PG AD+ G VGD +LA + V
Sbjct: 42 GISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGV 84
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 32.3 bits (72), Expect = 0.35, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 96 GLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G G DG G ++ I GG AD +G Q GD++L+ + +
Sbjct: 17 GFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGI 58
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC-CYSK 264
+L R G+Y A K+ESV ++P+ E +V S C C+SK
Sbjct: 243 ELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCFSK 284
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 32.0 bits (71), Expect = 0.50, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 96 GLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G G DG G +I I GG AD +G + GD++++ ++V
Sbjct: 18 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSV 59
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC-CYSK 264
+L R G+Y A K+ESV ++P+ E +V S C C+SK
Sbjct: 266 ELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCFSK 307
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 31.6 bits (70), Expect = 0.57, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM 163
DGG YI +I GG+ G + GD +L + + E + R + I + GP+++
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDM-NFENMSNDDAVRVLRDIVHKPGPIVL 90
Query: 164 KMQKRYGKMEQTGELSEK 181
+ K G + G + K
Sbjct: 91 TVAKSGGGWKDYGWIDGK 108
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 31.6 bits (70), Expect = 0.60, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 96 GLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G G DG G +I I GG AD +G + GD++++ ++V
Sbjct: 21 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSV 62
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 31.6 bits (70), Expect = 0.61, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 96 GLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G+ G++ G I I PG AD+ G VGD +LA + V
Sbjct: 17 GISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGV 59
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 31.6 bits (70), Expect = 0.61, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 96 GLKFAKGRDGGT--YIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G+ G++ G I I PG AD+ G VGD +LA + V
Sbjct: 24 GISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGV 66
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 102 GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G G Y+ ++ PG +A G QV DK++A V
Sbjct: 43 GEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGV 77
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 96 GLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G G DG G +I I GG AD +G + GD++L+ + V
Sbjct: 28 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGV 69
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 96 GLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G G DG G +I I GG AD +G + GD++L+ + V
Sbjct: 28 GFNIIGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGV 69
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 31.2 bits (69), Expect = 0.89, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM 163
DGG YI +I GG+ G + GD +L + + E + R + I + GP+++
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDM-NFENMSNDDAVRVLRDIVHKPGPIVL 90
Query: 164 KMQKRYGKME 173
+ K G E
Sbjct: 91 TVAKSGGGGE 100
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 31.2 bits (69), Expect = 0.92, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 102 GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI 141
G D G +I I PGG+A + G +V D +L + V +E+
Sbjct: 36 GDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEV 75
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G +I + PGG A TG+ V D+VL + +
Sbjct: 66 GIFISRLVPGGLAQSTGLLAVNDEVLEVNGI 96
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 96 GLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G G DG G ++ I GG AD +G + GD++L+ + V
Sbjct: 26 GFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGV 67
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM 163
DGG YI +I GG+ G + GD +L + + E + R + I + GP+++
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDM-NFENMSNDDAVRVLRDIVHKPGPIVL 90
Query: 164 KMQKRYG 170
+ K G
Sbjct: 91 TVAKSGG 97
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM 163
DGG YI +I GG+ G + GD +L + + E + R + I + GP+++
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDM-NFENMSNDDAVRVLRDIVHKPGPIVL 90
Query: 164 KMQKRYG 170
+ K G
Sbjct: 91 TVAKSGG 97
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM 163
DGG YI +I GG+ G + GD +L + + E + R + I + GP+++
Sbjct: 26 DGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDI-NFENXSNDDAVRVLRDIVHKPGPIVL 84
Query: 164 KMQK 167
+ K
Sbjct: 85 TVAK 88
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM 163
DGG YI +I GG+ G + GD +L + + E + R + I + GP+++
Sbjct: 28 DGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDI-NFENXSNDDAVRVLRDIVHKPGPIVL 86
Query: 164 KMQK 167
+ K
Sbjct: 87 TVAK 90
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM 163
DGG YI +I GG+ G + GD +L + + E + R + I + GP+++
Sbjct: 28 DGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDI-NFENXSNDDAVRVLRDIVHKPGPIVL 86
Query: 164 KMQK 167
+ K
Sbjct: 87 TVAK 90
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM 163
DGG YI +I GG+ G + GD +L + V E + R + I + GP+ +
Sbjct: 25 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDV-NFENMSNDDAVRVLREIVSQTGPISL 83
Query: 164 KMQKRY 169
+ K +
Sbjct: 84 TVAKAW 89
>pdb|2OY8|A Chain A, The Crystal Structure Of Ospa Mutant
Length = 320
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 109 IDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQ-- 166
+DA+ G++DK V + V A ++ ++ + + G+T + + G L+ +
Sbjct: 36 VDALELSGTSDKNNGSGVLEGVKADASKV--KLTISDDLGQTTLEVFKSDGSTLVSKKVT 93
Query: 167 -----KRYGKMEQTGELSEKEIIRAERNS 190
Y K + GELSEK+I RA+++S
Sbjct: 94 SKDKSSTYEKFNEKGELSEKKITRADKSS 122
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 96 GLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G G DG G ++ I GG AD +G + GD++L+ + V
Sbjct: 29 GFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGV 70
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G +I + PGG A+ TG+ V D+V+ + +
Sbjct: 39 GIFISRLVPGGLAESTGLLAVNDEVIEVNGI 69
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM 163
DGG YI +I GG+ G + GD +L + V E + R + I + GP+ +
Sbjct: 28 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDV-NFENMSNDDAVRVLREIVSQTGPISL 86
Query: 164 KMQK 167
+ K
Sbjct: 87 TVAK 90
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 100 AKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
K ++ YI + PGG AD+ G + GD++L+ + V
Sbjct: 25 GKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGV 61
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G +I + PGG A+ TG+ V D+V+ + +
Sbjct: 41 GIFISRLVPGGLAESTGLLAVNDEVIEVNGI 71
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM 163
DGG YI +I GG+ G + GD +L + + E + R + I + GP+++
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDM-NFENMSNDDAVRVLRDIVHKPGPIVL 90
Query: 164 KMQK 167
+ K
Sbjct: 91 TVAK 94
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G +I + PGG A+ TG+ V D+V+ + +
Sbjct: 67 GIFISRLVPGGLAESTGLLAVNDEVIEVNGI 97
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G +I + PGG A+ TG+ V D+V+ + +
Sbjct: 67 GIFISRLVPGGLAESTGLLAVNDEVIEVNGI 97
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVL 131
D Y+ I GG+A K G QVGD++L
Sbjct: 53 DNSIYVTKIIDGGAAQKDGRLQVGDRLL 80
>pdb|3U1V|A Chain A, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|B Chain B, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|C Chain C, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|D Chain D, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
Length = 338
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 107 TYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQ 166
T ++ G A G+ A ++ T+I P EYG+ +Y + + L +
Sbjct: 106 TLFKELSAGKEAVSAGLLTHPPIYAAXILLYNTDIVPVGEYGKQLYELTRD---LAERFN 162
Query: 167 KRYGKM 172
KRYG++
Sbjct: 163 KRYGEL 168
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 96 GLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVL 131
G K G G G YI I PGGSA++TG G +VL
Sbjct: 38 GGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVL 75
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGL 272
LR G+QLY G+Y+ A FE L P E A Y +A KL V L
Sbjct: 9 LRLGVQLYALGRYDAALTLFERALKENPQDPE---ALYWLARTQLKLGLVNPAL 59
>pdb|2OY7|A Chain A, The Crystal Structure Of Ospa Mutant
Length = 320
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 109 IDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQ-- 166
+DA+ G++DK V + V A ++ ++ + + G+T + + G L+ +
Sbjct: 36 VDALELSGTSDKNNGSGVLEGVKADASKV--KLTISDDLGQTTLEVFKSDGSTLVSKKVT 93
Query: 167 -----KRYGKMEQTGELSEKEIIRAERNS 190
Y K + GELSEK I RA+++S
Sbjct: 94 SKDKSSTYEKFNEKGELSEKYITRADKSS 122
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL-EDALL 280
G+ L + G ++ A E F+SVL PT YN A + G L +D LL
Sbjct: 84 GIYLTQAGNFDAAYEAFDSVLELDPT--------YNYAHLNRGIALYYGGRDKLAQDDLL 135
Query: 281 AGYED 285
A Y+D
Sbjct: 136 AFYQD 140
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 28.9 bits (63), Expect = 3.7, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 109 IDAIAPGGSADKTGMFQVGDKVLATSAV 136
I ++ PGG AD+ G + GD++L+ +
Sbjct: 36 ITSVRPGGPADREGTIKPGDRLLSVDGI 63
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 28.9 bits (63), Expect = 3.8, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 96 GLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G G G G +I I GG AD +G + GD++L+ + V
Sbjct: 20 GFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGV 61
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 102 GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA 145
G D +I I PGG+A + G +V D +L + V E+ +A
Sbjct: 28 GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSA 71
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 102 GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA 145
G D +I I PGG+A + G +V D +L + V E+ +A
Sbjct: 28 GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSA 71
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 96 GLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136
G G G G +I I GG AD +G + GD++L+ + V
Sbjct: 25 GFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGV 66
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 102 GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA 145
G D +I I PGG+A + G +V D +L + V E+ +A
Sbjct: 29 GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSA 72
>pdb|2QQA|A Chain A, Crystal Structure Of Dtxr(E9a C102d) Complexed With
Nickel(Ii)
Length = 226
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 145 AEYGRTMYTIRQR-VGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQM 202
A Y RT+Y + + V PL ++ +R +EQ+G + + R ER+ V+ R +QM
Sbjct: 9 AMYLRTIYELEEEGVTPLRARIAER---LEQSGPTVSQTVARMERDGLVVVASDRSLQM 64
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 28.5 bits (62), Expect = 4.9, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 109 IDAIAPGGSADKTGMFQVGDKVLATSA 135
I ++ GG A++TG +GD++LA ++
Sbjct: 34 ISSLTKGGLAERTGAIHIGDRILAINS 60
>pdb|1G3Y|A Chain A, Arg80ala Dtxr
Length = 226
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 147 YGRTMYTIRQR-VGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQM 202
Y RT+Y + + V PL ++ +R +EQ+G + + R ER+ V+ R +QM
Sbjct: 11 YLRTIYELEEEGVTPLRARIAER---LEQSGPTVSQTVARMERDGLVVVASDRSLQM 64
>pdb|1P92|A Chain A, Crystal Structure Of (H79a)dtxr
Length = 226
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 147 YGRTMYTIRQR-VGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQM 202
Y RT+Y + + V PL ++ +R +EQ+G + + R ER+ V+ R +QM
Sbjct: 11 YLRTIYELEEEGVTPLRARIAER---LEQSGPTVSQTVARMERDGLVVVASDRSLQM 64
>pdb|2QQB|A Chain A, Crystal Structure Of Dtxr(m10a C102d) Complexed With
Nickel(ii)
Length = 226
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 147 YGRTMYTIRQR-VGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQM 202
Y RT+Y + + V PL ++ +R +EQ+G + + R ER+ V+ R +QM
Sbjct: 11 YLRTIYELEEEGVTPLRARIAER---LEQSGPTVSQTVARMERDGLVVVASDRSLQM 64
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 28.1 bits (61), Expect = 6.4, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEI 141
D G +I I PGG+A G V D VL + V +E+
Sbjct: 33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEV 70
>pdb|1C0W|A Chain A, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
pdb|1C0W|B Chain B, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
pdb|1C0W|C Chain C, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
pdb|1C0W|D Chain D, Crystal Structure Of The Cobalt-Activated Diphtheria Toxin
Repressor-Dna Complex Reveals A Metal Binding Sh-Like
Domain
Length = 225
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 147 YGRTMYTIRQR-VGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQM 202
Y RT+Y + + V PL ++ +R +EQ+G + + R ER+ V+ R +QM
Sbjct: 10 YLRTIYELEEEGVTPLRARIAER---LEQSGPTVSQTVARMERDGLVVVASDRSLQM 63
>pdb|1DPR|A Chain A, Structures Of The Apo-And Metal Ion Activated Forms Of The
Diphtheria Tox Repressor From Corynebacterium
Diphtheriae
pdb|1DPR|B Chain B, Structures Of The Apo-And Metal Ion Activated Forms Of The
Diphtheria Tox Repressor From Corynebacterium
Diphtheriae
pdb|1BI2|A Chain A, Structure Of Apo-And Holo-Diphtheria Toxin Repressor
pdb|1BI2|B Chain B, Structure Of Apo-And Holo-Diphtheria Toxin Repressor
pdb|2DTR|A Chain A, Structure Of Diphtheria Toxin Repressor
Length = 226
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 147 YGRTMYTIRQR-VGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQM 202
Y RT+Y + + V PL ++ +R +EQ+G + + R ER+ V+ R +QM
Sbjct: 11 YLRTIYELEEEGVTPLRARIAER---LEQSGPTVSQTVARMERDGLVVVASDRSLQM 64
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 28.1 bits (61), Expect = 6.6, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 108 YIDAIAPGGSADKTGMFQVGDKVLATSAV 136
++ A+ PGG+AD+ G+ + GD++L + V
Sbjct: 46 HVSAVLPGGAADRAGV-RKGDRILEVNGV 73
>pdb|3GLX|A Chain A, Crystal Structure Analysis Of The Dtxr(E175k) Complexed
With Ni(Ii)
Length = 226
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 147 YGRTMYTIRQR-VGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQM 202
Y RT+Y + + V PL ++ +R +EQ+G + + R ER+ V+ R +QM
Sbjct: 11 YLRTIYELEEEGVTPLRARIAER---LEQSGPTVSQTVARMERDGLVVVASDRSLQM 64
>pdb|2QQ9|A Chain A, Crystal Structure Of Dtxr(D6a C102d) Complexed With
Nickel(Ii)
Length = 226
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 147 YGRTMYTIRQR-VGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQM 202
Y RT+Y + + V PL ++ +R +EQ+G + + R ER+ V+ R +QM
Sbjct: 11 YLRTIYELEEEGVTPLRARIAER---LEQSGPTVSQTVARMERDGLVVVASDRSLQM 64
>pdb|1BI3|A Chain A, Structure Of Apo-And Holo-Diphtheria Toxin Repressor
pdb|1BI3|B Chain B, Structure Of Apo-And Holo-Diphtheria Toxin Repressor
pdb|1BI0|A Chain A, Structure Of Apo-And Holo-Diphtheria Toxin Repressor
pdb|1BI1|A Chain A, Structure Of Apo-And Holo-Diphtheria Toxin Repressor
Length = 226
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 147 YGRTMYTIRQR-VGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQM 202
Y RT+Y + + V PL ++ +R +EQ+G + + R ER+ V+ R +QM
Sbjct: 11 YLRTIYELEEEGVTPLRARIAER---LEQSGPTVSQTVARMERDGLVVVASDRSLQM 64
>pdb|1DDN|A Chain A, Diphtheria Tox Repressor (C102d Mutant)TOX DNA OPERATOR
Complex
pdb|1DDN|B Chain B, Diphtheria Tox Repressor (C102d Mutant)TOX DNA OPERATOR
Complex
pdb|1DDN|C Chain C, Diphtheria Tox Repressor (C102d Mutant)TOX DNA OPERATOR
Complex
pdb|1DDN|D Chain D, Diphtheria Tox Repressor (C102d Mutant)TOX DNA OPERATOR
Complex
pdb|2TDX|A Chain A, Diphtheria Tox Repressor (C102d Mutant) Complexed With
Nickel
Length = 226
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 147 YGRTMYTIRQR-VGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQM 202
Y RT+Y + + V PL ++ +R +EQ+G + + R ER+ V+ R +QM
Sbjct: 11 YLRTIYELEEEGVTPLRARIAER---LEQSGPTVSQTVARMERDGLVVVASDRSLQM 64
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 109 IDAIAPGGSADKTGMFQVGDKVLATSAV 136
I + PGG AD+ G + GD++L+ +
Sbjct: 139 ITCVRPGGPADREGTIKPGDRLLSVDGI 166
>pdb|1G3S|A Chain A, Cys102ser Dtxr
pdb|1G3T|A Chain A, Cys102ser Dtxr
pdb|1G3T|B Chain B, Cys102ser Dtxr
pdb|1G3W|A Chain A, Cd-Cys102ser Dtxr
Length = 226
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 147 YGRTMYTIRQR-VGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQM 202
Y RT+Y + + V PL ++ +R +EQ+G + + R ER+ V+ R +QM
Sbjct: 11 YLRTIYELEEEGVTPLRARIAER---LEQSGPTVSQTVARMERDGLVVVASDRSLQM 64
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 28.1 bits (61), Expect = 8.0, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 108 YIDAIAPGGSADKTGMFQVGDKVLATSAV 136
++ A+ PGG+AD+ G+ + GD++L + V
Sbjct: 46 HVSAVLPGGAADRAGV-RKGDRILEVNGV 73
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 28.1 bits (61), Expect = 8.2, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 108 YIDAIAPGGSADKTGMFQVGDKVLATSAV 136
++ A+ PGG+AD+ G+ + GD++L + V
Sbjct: 46 HVSAVLPGGAADRAGV-RKGDRILEVNGV 73
>pdb|1XCV|A Chain A, Crystal Structure Of (h79ac102d)dtxr Complexed With
Nickel(ii)
Length = 139
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 147 YGRTMYTIRQR-VGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQM 202
Y RT+Y + + V PL ++ +R +EQ+G + + R ER+ V+ R +QM
Sbjct: 11 YLRTIYELEEEGVTPLRARIAER---LEQSGPTVSQTVARMERDGLVVVASDRSLQM 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,501,197
Number of Sequences: 62578
Number of extensions: 257554
Number of successful extensions: 818
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 722
Number of HSP's gapped (non-prelim): 123
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)