Query 019871
Match_columns 334
No_of_seqs 317 out of 1640
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:12:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03098 LPA1 LOW PSII ACCUMUL 99.6 3.5E-15 7.6E-20 149.3 11.9 104 212-315 71-175 (453)
2 KOG0548 Molecular co-chaperone 99.6 4E-14 8.7E-19 142.7 15.6 223 80-329 240-471 (539)
3 PF13414 TPR_11: TPR repeat; P 99.3 1.5E-11 3.3E-16 91.6 7.7 66 215-283 3-69 (69)
4 KOG4626 O-linked N-acetylgluco 99.3 4.9E-11 1.1E-15 122.5 13.4 156 155-315 255-415 (966)
5 PRK15359 type III secretion sy 99.2 1.1E-10 2.3E-15 100.6 11.5 88 198-288 40-128 (144)
6 KOG4626 O-linked N-acetylgluco 99.2 1.5E-11 3.2E-16 126.3 6.5 173 153-330 185-383 (966)
7 KOG0553 TPR repeat-containing 99.2 6.9E-11 1.5E-15 112.8 9.3 89 195-286 94-183 (304)
8 KOG0553 TPR repeat-containing 99.2 1.7E-10 3.6E-15 110.2 10.1 97 215-316 81-177 (304)
9 PRK15359 type III secretion sy 99.1 3.5E-10 7.7E-15 97.4 10.7 107 203-316 14-120 (144)
10 PF13432 TPR_16: Tetratricopep 99.1 2.3E-10 5E-15 84.4 7.9 65 219-286 1-65 (65)
11 PRK11189 lipoprotein NlpI; Pro 99.1 1.2E-09 2.6E-14 104.5 15.0 99 186-287 66-167 (296)
12 TIGR00990 3a0801s09 mitochondr 99.1 1.7E-09 3.7E-14 112.8 14.6 156 156-316 335-495 (615)
13 PLN03088 SGT1, suppressor of 99.0 5.3E-09 1.1E-13 103.0 13.9 89 196-287 16-105 (356)
14 TIGR02552 LcrH_SycD type III s 98.9 1.6E-08 3.4E-13 84.1 11.3 86 198-286 33-119 (135)
15 PRK12370 invasion protein regu 98.9 1.8E-08 3.9E-13 104.4 13.8 112 199-315 321-433 (553)
16 TIGR00990 3a0801s09 mitochondr 98.9 2.9E-08 6.3E-13 103.6 15.4 126 157-285 370-500 (615)
17 PRK10370 formate-dependent nit 98.9 2.8E-08 6E-13 90.3 13.2 110 201-315 58-171 (198)
18 TIGR02552 LcrH_SycD type III s 98.9 2.6E-08 5.7E-13 82.7 12.1 109 204-317 5-114 (135)
19 PRK09782 bacteriophage N4 rece 98.8 4.1E-08 8.9E-13 108.2 15.0 125 187-316 612-739 (987)
20 PRK11189 lipoprotein NlpI; Pro 98.8 5.7E-08 1.2E-12 93.0 14.2 112 199-315 43-159 (296)
21 PRK10370 formate-dependent nit 98.8 2.4E-08 5.3E-13 90.6 10.8 99 185-286 74-178 (198)
22 COG3063 PilF Tfp pilus assembl 98.8 1.1E-07 2.4E-12 88.3 15.1 139 149-289 32-176 (250)
23 KOG0548 Molecular co-chaperone 98.8 4E-08 8.7E-13 99.8 11.6 116 195-313 371-510 (539)
24 TIGR02521 type_IV_pilW type IV 98.8 2.4E-07 5.3E-12 80.6 15.0 158 154-314 33-195 (234)
25 KOG1126 DNA-binding cell divis 98.8 1.4E-08 3E-13 105.1 8.2 124 187-315 424-550 (638)
26 PF13371 TPR_9: Tetratricopept 98.8 2.9E-08 6.4E-13 74.4 7.9 63 222-287 2-64 (73)
27 PRK15363 pathogenicity island 98.8 5.1E-08 1.1E-12 85.9 10.4 83 198-283 51-134 (157)
28 PLN02789 farnesyltranstransfer 98.7 2.8E-07 6.1E-12 89.9 15.6 123 161-287 46-177 (320)
29 PLN03088 SGT1, suppressor of 98.7 9.2E-08 2E-12 94.2 11.9 94 217-315 4-97 (356)
30 PRK15363 pathogenicity island 98.7 9.3E-08 2E-12 84.3 10.2 69 217-288 37-105 (157)
31 PRK09782 bacteriophage N4 rece 98.7 2.1E-07 4.5E-12 102.6 14.9 116 196-316 590-705 (987)
32 PRK12370 invasion protein regu 98.7 6.9E-07 1.5E-11 92.6 17.5 112 199-315 278-399 (553)
33 PRK15174 Vi polysaccharide exp 98.7 1.7E-07 3.7E-12 99.2 13.2 110 201-315 269-379 (656)
34 TIGR02795 tol_pal_ybgF tol-pal 98.7 2.8E-07 6.1E-12 73.8 11.5 89 199-287 19-111 (119)
35 KOG0550 Molecular chaperone (D 98.7 1.1E-07 2.4E-12 94.5 10.7 160 158-319 175-352 (486)
36 PRK15179 Vi polysaccharide bio 98.7 3.3E-07 7.2E-12 97.7 14.4 125 186-315 88-215 (694)
37 KOG0543 FKBP-type peptidyl-pro 98.7 1.3E-06 2.7E-11 86.8 17.3 148 123-287 173-326 (397)
38 CHL00033 ycf3 photosystem I as 98.6 4.6E-07 1E-11 79.1 12.6 70 218-287 38-107 (168)
39 PRK02603 photosystem I assembl 98.6 3.4E-07 7.3E-12 80.5 11.8 70 218-287 38-107 (172)
40 cd00189 TPR Tetratricopeptide 98.6 7.5E-07 1.6E-11 65.1 11.8 66 218-286 3-68 (100)
41 PF14559 TPR_19: Tetratricopep 98.6 5.6E-08 1.2E-12 71.9 5.5 59 225-286 1-59 (68)
42 KOG0547 Translocase of outer m 98.6 1.1E-07 2.3E-12 96.1 9.0 69 218-289 118-186 (606)
43 PF12895 Apc3: Anaphase-promot 98.6 1.1E-07 2.3E-12 73.9 7.1 76 199-278 6-84 (84)
44 KOG4234 TPR repeat-containing 98.6 2.1E-07 4.7E-12 85.2 9.4 91 193-286 106-202 (271)
45 KOG1155 Anaphase-promoting com 98.6 7.2E-07 1.6E-11 89.8 13.9 115 199-331 347-462 (559)
46 PRK15174 Vi polysaccharide exp 98.6 6.8E-07 1.5E-11 94.7 14.7 127 156-286 250-386 (656)
47 TIGR02795 tol_pal_ybgF tol-pal 98.6 7.1E-07 1.5E-11 71.4 10.8 69 217-285 4-72 (119)
48 PF13424 TPR_12: Tetratricopep 98.6 1.7E-07 3.8E-12 71.3 6.5 64 218-281 8-75 (78)
49 TIGR02521 type_IV_pilW type IV 98.6 1.4E-06 3E-11 75.8 12.9 82 198-282 47-129 (234)
50 cd00189 TPR Tetratricopeptide 98.5 8.7E-07 1.9E-11 64.7 9.7 82 200-284 18-100 (100)
51 KOG1155 Anaphase-promoting com 98.5 2.1E-06 4.6E-11 86.5 15.3 86 199-287 381-467 (559)
52 PRK02603 photosystem I assembl 98.5 1.3E-06 2.9E-11 76.7 11.9 97 187-286 38-154 (172)
53 KOG1125 TPR repeat-containing 98.5 2.5E-07 5.5E-12 94.8 8.3 84 199-285 447-531 (579)
54 PLN02789 farnesyltranstransfer 98.5 2.2E-06 4.8E-11 83.6 14.5 112 199-316 54-170 (320)
55 TIGR02917 PEP_TPR_lipo putativ 98.5 2.2E-06 4.8E-11 89.2 15.0 83 201-287 755-838 (899)
56 TIGR03302 OM_YfiO outer membra 98.5 1.5E-06 3.2E-11 79.1 12.0 92 195-286 46-149 (235)
57 KOG1126 DNA-binding cell divis 98.5 9.7E-07 2.1E-11 91.7 11.4 111 198-313 471-582 (638)
58 KOG0547 Translocase of outer m 98.5 9.3E-07 2E-11 89.5 10.6 114 202-320 380-494 (606)
59 PRK11788 tetratricopeptide rep 98.5 5.2E-06 1.1E-10 80.5 15.5 130 154-286 109-248 (389)
60 PRK11788 tetratricopeptide rep 98.5 5.8E-06 1.3E-10 80.2 15.7 156 155-315 144-309 (389)
61 PRK11447 cellulose synthase su 98.4 3.3E-06 7.2E-11 94.7 15.6 126 159-287 276-420 (1157)
62 KOG0624 dsRNA-activated protei 98.4 4E-06 8.7E-11 82.2 13.8 134 190-329 46-183 (504)
63 COG3063 PilF Tfp pilus assembl 98.4 4E-06 8.6E-11 78.1 12.6 127 184-315 37-166 (250)
64 KOG4234 TPR repeat-containing 98.4 3.9E-06 8.4E-11 77.1 11.8 96 218-315 98-195 (271)
65 PRK15179 Vi polysaccharide bio 98.4 3E-06 6.5E-11 90.5 12.9 125 156-284 90-220 (694)
66 TIGR03302 OM_YfiO outer membra 98.4 8.3E-06 1.8E-10 74.2 14.0 86 199-284 87-198 (235)
67 PRK10803 tol-pal system protei 98.4 3.4E-06 7.3E-11 80.2 11.6 88 199-286 160-251 (263)
68 TIGR02917 PEP_TPR_lipo putativ 98.4 1.1E-05 2.3E-10 84.1 16.0 87 198-287 719-805 (899)
69 PRK10049 pgaA outer membrane p 98.3 6.4E-06 1.4E-10 88.7 14.4 86 199-288 66-152 (765)
70 PF06552 TOM20_plant: Plant sp 98.3 3.1E-06 6.6E-11 76.2 9.3 106 197-308 6-133 (186)
71 CHL00033 ycf3 photosystem I as 98.3 8.9E-06 1.9E-10 71.0 11.6 86 198-286 51-154 (168)
72 KOG1125 TPR repeat-containing 98.3 4E-06 8.7E-11 86.1 10.5 108 203-315 415-525 (579)
73 KOG4648 Uncharacterized conser 98.3 1.8E-06 4E-11 84.5 7.3 67 218-287 100-166 (536)
74 PF13429 TPR_15: Tetratricopep 98.2 4.8E-06 1E-10 78.2 9.2 116 195-315 159-275 (280)
75 PRK11447 cellulose synthase su 98.2 1.8E-05 3.9E-10 88.8 14.8 114 198-315 619-738 (1157)
76 KOG0543 FKBP-type peptidyl-pro 98.2 9.3E-06 2E-10 80.7 10.6 95 218-315 211-318 (397)
77 KOG1128 Uncharacterized conser 98.2 6.5E-06 1.4E-10 86.6 9.7 118 193-315 496-614 (777)
78 PF12895 Apc3: Anaphase-promot 98.2 2E-06 4.4E-11 66.7 4.6 59 227-287 1-59 (84)
79 PRK10049 pgaA outer membrane p 98.1 3.5E-05 7.6E-10 83.1 14.3 111 199-315 32-143 (765)
80 PRK10866 outer membrane biogen 98.1 2.4E-05 5.2E-10 73.4 11.4 88 198-285 48-157 (243)
81 PRK10803 tol-pal system protei 98.1 3.4E-05 7.4E-10 73.4 12.4 71 216-286 143-214 (263)
82 PRK14720 transcript cleavage f 98.1 4.5E-05 9.7E-10 83.2 13.6 190 133-329 9-251 (906)
83 PF00515 TPR_1: Tetratricopept 98.1 5.6E-06 1.2E-10 53.5 4.2 32 253-284 2-33 (34)
84 PF13512 TPR_18: Tetratricopep 98.1 4.5E-05 9.7E-10 66.3 10.7 70 215-284 10-79 (142)
85 PF13431 TPR_17: Tetratricopep 98.0 4.1E-06 8.9E-11 55.2 3.0 34 237-273 1-34 (34)
86 KOG4555 TPR repeat-containing 98.0 1.4E-05 3E-10 69.1 6.9 60 220-282 48-107 (175)
87 PRK10866 outer membrane biogen 98.0 0.00015 3.2E-09 68.1 14.2 73 214-286 31-103 (243)
88 PF12688 TPR_5: Tetratrico pep 98.0 9E-05 1.9E-09 62.6 11.3 81 199-279 18-102 (120)
89 KOG4642 Chaperone-dependent E3 98.0 8.8E-06 1.9E-10 76.3 5.3 65 220-287 15-79 (284)
90 COG5010 TadD Flp pilus assembl 98.0 6E-05 1.3E-09 71.2 11.0 81 201-284 119-200 (257)
91 COG5010 TadD Flp pilus assembl 98.0 9.1E-05 2E-09 70.0 11.6 89 220-313 105-193 (257)
92 KOG0624 dsRNA-activated protei 98.0 3E-05 6.6E-10 76.2 8.5 93 217-315 40-133 (504)
93 PF09976 TPR_21: Tetratricopep 97.9 0.00014 3.1E-09 62.1 11.8 60 218-277 51-110 (145)
94 KOG1129 TPR repeat-containing 97.9 2E-05 4.3E-10 77.0 7.0 131 158-288 296-431 (478)
95 KOG1173 Anaphase-promoting com 97.9 2.6E-05 5.7E-10 80.2 8.1 64 219-285 459-522 (611)
96 PF13414 TPR_11: TPR repeat; P 97.9 4.5E-05 9.7E-10 56.4 7.1 52 195-246 16-69 (69)
97 PF07719 TPR_2: Tetratricopept 97.9 2.4E-05 5.1E-10 50.1 4.9 33 253-285 2-34 (34)
98 PF13525 YfiO: Outer membrane 97.9 0.00015 3.2E-09 65.8 11.6 71 215-285 5-75 (203)
99 KOG1173 Anaphase-promoting com 97.9 0.00016 3.5E-09 74.5 12.9 116 198-315 362-516 (611)
100 KOG0550 Molecular chaperone (D 97.9 4.8E-05 1E-09 76.0 8.7 88 194-284 261-353 (486)
101 PF13512 TPR_18: Tetratricopep 97.9 0.00011 2.4E-09 63.9 9.8 67 218-284 50-131 (142)
102 COG4785 NlpI Lipoprotein NlpI, 97.8 0.00017 3.6E-09 67.3 10.8 97 188-287 69-168 (297)
103 PRK11906 transcriptional regul 97.8 0.00012 2.7E-09 74.2 10.8 83 202-287 324-407 (458)
104 KOG0551 Hsp90 co-chaperone CNS 97.8 0.00013 2.9E-09 71.2 10.5 93 220-315 86-180 (390)
105 cd05804 StaR_like StaR_like; a 97.8 0.00015 3.1E-09 69.6 10.5 62 220-284 119-180 (355)
106 PF00595 PDZ: PDZ domain (Also 97.8 1.1E-05 2.4E-10 62.3 2.1 41 93-134 10-53 (81)
107 cd05804 StaR_like StaR_like; a 97.8 0.00017 3.7E-09 69.2 10.6 86 198-283 130-217 (355)
108 KOG1130 Predicted G-alpha GTPa 97.8 9.6E-05 2.1E-09 74.1 8.7 62 220-281 200-264 (639)
109 PF12688 TPR_5: Tetratrico pep 97.8 0.0006 1.3E-08 57.6 12.3 108 217-325 3-117 (120)
110 COG4783 Putative Zn-dependent 97.8 0.00062 1.3E-08 69.3 14.4 75 211-288 335-410 (484)
111 COG1729 Uncharacterized protei 97.7 0.00027 5.9E-09 67.2 11.1 89 199-287 158-250 (262)
112 PRK15331 chaperone protein Sic 97.7 0.00018 4E-09 64.0 9.2 68 210-280 65-133 (165)
113 KOG4648 Uncharacterized conser 97.7 4.5E-05 9.8E-10 75.0 5.8 96 189-287 104-200 (536)
114 PF13432 TPR_16: Tetratricopep 97.7 0.00013 2.7E-09 53.5 6.7 55 194-248 9-64 (65)
115 PRK10153 DNA-binding transcrip 97.7 0.00028 6.1E-09 73.2 11.6 65 220-288 425-489 (517)
116 KOG0376 Serine-threonine phosp 97.7 3.3E-05 7.1E-10 78.3 4.2 88 197-287 19-107 (476)
117 KOG4162 Predicted calmodulin-b 97.7 0.00024 5.2E-09 75.4 10.5 89 195-286 697-788 (799)
118 PF00515 TPR_1: Tetratricopept 97.7 6.5E-05 1.4E-09 48.4 4.1 32 217-248 3-34 (34)
119 PRK15331 chaperone protein Sic 97.7 0.00031 6.7E-09 62.5 9.6 68 217-287 39-106 (165)
120 KOG2076 RNA polymerase III tra 97.7 0.001 2.2E-08 71.7 14.9 96 185-283 174-272 (895)
121 PF07719 TPR_2: Tetratricopept 97.6 0.00012 2.6E-09 46.7 4.8 32 217-248 3-34 (34)
122 KOG2076 RNA polymerase III tra 97.6 0.00058 1.3E-08 73.5 12.5 90 200-292 157-247 (895)
123 PF13525 YfiO: Outer membrane 97.6 0.0009 2E-08 60.7 12.1 88 199-286 22-124 (203)
124 PF13429 TPR_15: Tetratricopep 97.6 0.00016 3.5E-09 67.8 6.9 60 219-281 218-277 (280)
125 PF13428 TPR_14: Tetratricopep 97.5 0.0002 4.3E-09 49.3 5.2 40 218-260 4-43 (44)
126 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.00062 1.3E-08 68.5 10.9 76 200-278 218-294 (395)
127 KOG3060 Uncharacterized conser 97.5 0.00086 1.9E-08 63.6 11.0 118 161-286 95-225 (289)
128 COG4235 Cytochrome c biogenesi 97.5 0.0015 3.3E-08 62.9 12.8 107 204-315 144-254 (287)
129 KOG0376 Serine-threonine phosp 97.5 0.00011 2.4E-09 74.5 5.3 92 218-315 7-99 (476)
130 PRK10153 DNA-binding transcrip 97.5 0.0048 1E-07 64.1 17.4 112 199-316 359-481 (517)
131 PF13181 TPR_8: Tetratricopept 97.5 0.00019 4.2E-09 46.0 4.1 32 253-284 2-33 (34)
132 PRK11906 transcriptional regul 97.4 0.0061 1.3E-07 62.1 16.3 86 199-287 275-373 (458)
133 PRK14574 hmsH outer membrane p 97.4 0.0016 3.4E-08 71.2 12.7 65 220-287 107-171 (822)
134 KOG1840 Kinesin light chain [C 97.4 0.0012 2.6E-08 68.4 11.1 63 220-282 246-313 (508)
135 PRK10747 putative protoheme IX 97.4 0.0018 3.9E-08 64.6 11.6 72 206-281 318-390 (398)
136 COG1729 Uncharacterized protei 97.4 0.002 4.3E-08 61.4 11.1 70 217-286 143-212 (262)
137 KOG4642 Chaperone-dependent E3 97.3 0.00063 1.4E-08 64.1 7.3 80 200-282 28-108 (284)
138 KOG1128 Uncharacterized conser 97.3 0.00065 1.4E-08 71.9 8.1 84 201-287 469-554 (777)
139 COG2956 Predicted N-acetylgluc 97.3 0.0031 6.7E-08 61.8 11.8 129 154-284 143-281 (389)
140 PF09976 TPR_21: Tetratricopep 97.3 0.0021 4.5E-08 54.9 9.6 78 198-279 64-145 (145)
141 PF13428 TPR_14: Tetratricopep 97.2 0.00081 1.7E-08 46.2 5.3 35 253-287 2-36 (44)
142 COG4783 Putative Zn-dependent 97.2 0.0031 6.8E-08 64.3 11.4 80 199-281 357-437 (484)
143 KOG4555 TPR repeat-containing 97.2 0.0034 7.4E-08 54.6 9.9 90 198-287 59-150 (175)
144 PF13371 TPR_9: Tetratricopept 97.2 0.0018 3.9E-08 48.1 7.1 51 199-249 12-63 (73)
145 PRK14574 hmsH outer membrane p 97.2 0.0053 1.1E-07 67.2 13.4 88 199-289 51-139 (822)
146 TIGR00540 hemY_coli hemY prote 97.2 0.0031 6.8E-08 63.0 10.8 116 198-317 279-399 (409)
147 KOG2003 TPR repeat-containing 97.2 0.0024 5.3E-08 64.9 9.8 93 195-290 503-596 (840)
148 cd00136 PDZ PDZ domain, also c 97.1 0.00097 2.1E-08 49.5 5.1 40 93-133 1-40 (70)
149 KOG4162 Predicted calmodulin-b 97.1 0.003 6.6E-08 67.3 10.6 95 219-318 688-784 (799)
150 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0011 2.5E-08 67.3 7.2 69 244-316 70-140 (453)
151 PF14559 TPR_19: Tetratricopep 97.1 0.0022 4.9E-08 46.9 6.8 52 197-248 6-58 (68)
152 KOG1308 Hsp70-interacting prot 97.1 0.0003 6.5E-09 69.0 2.6 86 198-286 130-216 (377)
153 KOG2002 TPR-containing nuclear 97.0 0.0056 1.2E-07 66.7 11.9 129 200-330 148-282 (1018)
154 PF04733 Coatomer_E: Coatomer 97.0 0.0078 1.7E-07 58.0 11.9 56 230-288 182-237 (290)
155 cd00992 PDZ_signaling PDZ doma 97.0 0.0023 5E-08 48.6 6.5 58 92-156 11-72 (82)
156 COG4235 Cytochrome c biogenesi 97.0 0.006 1.3E-07 58.8 10.4 95 190-287 162-262 (287)
157 KOG0545 Aryl-hydrocarbon recep 97.0 0.0089 1.9E-07 56.8 11.2 93 194-289 190-301 (329)
158 COG4105 ComL DNA uptake lipopr 97.0 0.0056 1.2E-07 58.1 9.9 72 214-285 33-104 (254)
159 KOG2002 TPR-containing nuclear 97.0 0.006 1.3E-07 66.5 11.1 95 190-287 315-415 (1018)
160 KOG3060 Uncharacterized conser 96.9 0.017 3.7E-07 55.0 12.9 117 199-318 103-221 (289)
161 KOG1840 Kinesin light chain [C 96.9 0.012 2.6E-07 61.1 13.0 125 157-281 204-354 (508)
162 KOG1174 Anaphase-promoting com 96.9 0.0065 1.4E-07 61.3 10.4 86 198-287 420-506 (564)
163 PRK14720 transcript cleavage f 96.9 0.0062 1.3E-07 66.9 11.1 85 203-289 52-153 (906)
164 PF14938 SNAP: Soluble NSF att 96.8 0.0069 1.5E-07 57.6 9.6 128 197-324 130-273 (282)
165 KOG0551 Hsp90 co-chaperone CNS 96.8 0.005 1.1E-07 60.5 8.6 102 180-284 77-185 (390)
166 KOG3785 Uncharacterized conser 96.8 0.0079 1.7E-07 59.8 10.0 58 218-278 60-117 (557)
167 PF04733 Coatomer_E: Coatomer 96.8 0.0047 1E-07 59.5 8.4 100 203-311 188-289 (290)
168 TIGR00540 hemY_coli hemY prote 96.8 0.012 2.5E-07 58.9 11.4 94 216-312 264-359 (409)
169 smart00028 TPR Tetratricopepti 96.8 0.0022 4.8E-08 37.9 3.9 31 254-284 3-33 (34)
170 PF09295 ChAPs: ChAPs (Chs5p-A 96.8 0.031 6.6E-07 56.4 13.9 92 217-326 202-293 (395)
171 PF13181 TPR_8: Tetratricopept 96.8 0.0023 5E-08 40.8 3.9 31 217-247 3-33 (34)
172 PF13180 PDZ_2: PDZ domain; PD 96.8 0.0029 6.2E-08 49.0 5.2 38 95-133 3-41 (82)
173 KOG1127 TPR repeat-containing 96.7 0.0061 1.3E-07 66.7 9.0 91 220-315 567-657 (1238)
174 PF14938 SNAP: Soluble NSF att 96.7 0.0085 1.8E-07 57.0 9.1 140 142-282 26-185 (282)
175 PF13431 TPR_17: Tetratricopep 96.7 0.002 4.3E-08 42.3 3.2 32 205-236 2-34 (34)
176 COG2956 Predicted N-acetylgluc 96.6 0.083 1.8E-06 52.1 15.3 105 220-327 185-291 (389)
177 KOG2376 Signal recognition par 96.6 0.012 2.7E-07 61.3 10.1 65 218-282 113-205 (652)
178 PF13176 TPR_7: Tetratricopept 96.6 0.0036 7.9E-08 41.3 4.1 28 254-281 1-28 (36)
179 PRK10747 putative protoheme IX 96.6 0.023 4.9E-07 56.7 11.3 82 201-285 137-220 (398)
180 PF12569 NARP1: NMDA receptor- 96.5 0.01 2.2E-07 61.7 8.9 65 219-286 198-262 (517)
181 KOG1129 TPR repeat-containing 96.5 0.038 8.2E-07 54.6 12.2 84 201-287 275-359 (478)
182 PF13174 TPR_6: Tetratricopept 96.5 0.0041 8.8E-08 39.1 3.6 31 254-284 2-32 (33)
183 KOG0545 Aryl-hydrocarbon recep 96.5 0.02 4.4E-07 54.5 9.6 69 219-287 182-265 (329)
184 PRK10941 hypothetical protein; 96.5 0.016 3.5E-07 55.5 9.2 65 220-287 186-250 (269)
185 KOG1156 N-terminal acetyltrans 96.4 0.053 1.2E-06 57.2 13.3 95 191-294 21-116 (700)
186 PF03704 BTAD: Bacterial trans 96.4 0.018 3.9E-07 48.7 8.2 60 219-281 66-125 (146)
187 PF06552 TOM20_plant: Plant sp 96.4 0.015 3.3E-07 52.7 8.0 70 189-263 42-123 (186)
188 KOG1127 TPR repeat-containing 96.4 0.033 7.1E-07 61.3 11.7 93 187-282 565-660 (1238)
189 PF13424 TPR_12: Tetratricopep 96.4 0.018 3.9E-07 43.4 7.3 30 252-281 5-34 (78)
190 KOG1308 Hsp70-interacting prot 96.3 0.0029 6.2E-08 62.3 3.2 62 222-286 121-182 (377)
191 smart00228 PDZ Domain present 96.3 0.0078 1.7E-07 45.6 4.9 41 93-134 12-54 (85)
192 cd00990 PDZ_glycyl_aminopeptid 96.2 0.0065 1.4E-07 46.2 4.0 37 95-133 3-39 (80)
193 smart00028 TPR Tetratricopepti 96.2 0.0091 2E-07 35.1 3.9 31 218-248 4-34 (34)
194 COG4785 NlpI Lipoprotein NlpI, 96.2 0.011 2.5E-07 55.3 6.1 68 214-284 64-131 (297)
195 KOG2003 TPR repeat-containing 96.1 0.11 2.4E-06 53.3 13.2 160 153-314 491-686 (840)
196 PF13174 TPR_6: Tetratricopept 96.1 0.0094 2E-07 37.3 3.7 32 217-248 2-33 (33)
197 PF12569 NARP1: NMDA receptor- 96.0 0.063 1.4E-06 56.0 11.5 100 220-325 43-147 (517)
198 KOG3571 Dishevelled 3 and rela 96.0 0.011 2.4E-07 60.6 5.5 85 82-168 246-339 (626)
199 KOG1130 Predicted G-alpha GTPa 95.9 0.053 1.1E-06 55.0 10.0 126 156-282 199-345 (639)
200 KOG1174 Anaphase-promoting com 95.9 0.082 1.8E-06 53.6 11.0 93 220-315 237-361 (564)
201 COG0457 NrfG FOG: TPR repeat [ 95.8 0.48 1E-05 38.5 13.7 61 224-284 139-199 (291)
202 KOG2796 Uncharacterized conser 95.8 0.022 4.7E-07 54.8 6.2 75 220-300 257-331 (366)
203 cd00988 PDZ_CTP_protease PDZ d 95.7 0.016 3.6E-07 44.4 4.4 37 95-133 4-40 (85)
204 PF14561 TPR_20: Tetratricopep 95.7 0.018 3.9E-07 46.2 4.6 49 234-285 7-55 (90)
205 PF13374 TPR_10: Tetratricopep 95.7 0.022 4.8E-07 37.3 4.4 30 252-281 2-31 (42)
206 COG4976 Predicted methyltransf 95.6 0.017 3.7E-07 54.4 4.9 62 223-287 3-64 (287)
207 PF12862 Apc5: Anaphase-promot 95.6 0.05 1.1E-06 43.4 7.0 60 224-283 7-72 (94)
208 PLN03218 maturation of RBCL 1; 95.6 0.51 1.1E-05 53.3 17.2 61 220-282 654-714 (1060)
209 PLN03218 maturation of RBCL 1; 95.6 0.51 1.1E-05 53.3 17.1 69 211-283 680-750 (1060)
210 COG4700 Uncharacterized protei 95.5 0.14 3.1E-06 47.1 10.4 99 196-295 103-203 (251)
211 COG0457 NrfG FOG: TPR repeat [ 95.5 0.47 1E-05 38.5 12.7 84 198-284 146-234 (291)
212 PF13176 TPR_7: Tetratricopept 95.5 0.021 4.5E-07 37.6 3.7 28 218-245 2-29 (36)
213 KOG2053 Mitochondrial inherita 95.5 0.24 5.3E-06 54.0 13.5 77 205-284 32-109 (932)
214 PF14853 Fis1_TPR_C: Fis1 C-te 95.4 0.041 8.9E-07 40.0 5.3 34 254-287 3-36 (53)
215 PLN03081 pentatricopeptide (PP 95.4 0.16 3.5E-06 54.1 12.0 89 220-328 365-453 (697)
216 PF12968 DUF3856: Domain of Un 95.4 0.14 3.1E-06 43.8 9.2 89 193-281 20-129 (144)
217 PLN03081 pentatricopeptide (PP 95.3 0.27 5.9E-06 52.4 13.5 118 211-333 422-560 (697)
218 KOG4340 Uncharacterized conser 95.2 0.031 6.7E-07 54.7 5.1 65 218-285 147-211 (459)
219 KOG3081 Vesicle coat complex C 95.2 1.4 3.1E-05 42.4 16.2 68 218-289 172-244 (299)
220 KOG2376 Signal recognition par 95.1 0.12 2.7E-06 54.1 9.6 63 219-287 83-145 (652)
221 PF14853 Fis1_TPR_C: Fis1 C-te 95.0 0.05 1.1E-06 39.6 4.7 32 218-249 4-35 (53)
222 COG3071 HemY Uncharacterized e 94.9 0.2 4.2E-06 50.3 10.0 69 207-279 319-388 (400)
223 PLN03077 Protein ECB2; Provisi 94.9 0.44 9.6E-06 52.0 13.8 54 223-283 532-585 (857)
224 KOG0609 Calcium/calmodulin-dep 94.9 0.017 3.8E-07 59.6 2.7 73 90-166 131-203 (542)
225 COG4105 ComL DNA uptake lipopr 94.7 0.78 1.7E-05 43.7 13.2 67 218-284 74-148 (254)
226 KOG1156 N-terminal acetyltrans 94.7 0.12 2.6E-06 54.7 8.2 79 200-281 93-172 (700)
227 KOG1310 WD40 repeat protein [G 94.6 0.22 4.8E-06 51.9 9.8 91 193-286 385-479 (758)
228 PF14561 TPR_20: Tetratricopep 94.3 0.73 1.6E-05 36.9 10.2 74 203-277 9-83 (90)
229 KOG3532 Predicted protein kina 94.2 0.03 6.6E-07 59.3 2.8 76 92-174 385-460 (1051)
230 PF12968 DUF3856: Domain of Un 94.0 0.58 1.3E-05 40.2 9.5 64 218-281 12-84 (144)
231 KOG3824 Huntingtin interacting 93.8 0.46 9.9E-06 46.9 9.7 67 218-287 119-185 (472)
232 cd00991 PDZ_archaeal_metallopr 93.7 0.11 2.5E-06 39.8 4.4 46 104-156 9-54 (79)
233 PF03704 BTAD: Bacterial trans 93.7 2.1 4.6E-05 35.9 12.7 69 219-287 10-97 (146)
234 KOG4814 Uncharacterized conser 93.6 0.27 5.8E-06 52.3 8.2 69 218-286 357-428 (872)
235 KOG1586 Protein required for f 93.6 1 2.2E-05 42.9 11.3 69 215-283 73-145 (288)
236 COG4700 Uncharacterized protei 93.5 2 4.3E-05 39.8 12.6 74 208-284 82-156 (251)
237 PF10579 Rapsyn_N: Rapsyn N-te 93.4 0.28 6.1E-06 38.7 6.2 64 218-281 9-72 (80)
238 PF10300 DUF3808: Protein of u 93.2 0.74 1.6E-05 47.4 10.6 75 210-284 261-337 (468)
239 COG2976 Uncharacterized protei 93.2 0.54 1.2E-05 43.3 8.5 64 219-286 130-193 (207)
240 PLN03077 Protein ECB2; Provisi 93.1 1.3 2.8E-05 48.4 13.0 61 216-280 555-617 (857)
241 KOG3364 Membrane protein invol 93.0 0.76 1.6E-05 40.1 8.8 74 212-287 29-106 (149)
242 PF13374 TPR_10: Tetratricopep 93.0 0.14 3.1E-06 33.3 3.5 28 218-245 5-32 (42)
243 cd00987 PDZ_serine_protease PD 92.7 0.18 3.9E-06 38.7 4.3 45 104-155 23-67 (90)
244 cd00989 PDZ_metalloprotease PD 92.6 0.18 3.8E-06 37.9 4.0 44 106-156 13-56 (79)
245 KOG3081 Vesicle coat complex C 92.5 4.9 0.00011 38.9 14.3 92 213-313 205-297 (299)
246 KOG0495 HAT repeat protein [RN 92.5 1.9 4.1E-05 46.3 12.4 82 207-292 609-692 (913)
247 KOG4507 Uncharacterized conser 92.3 0.42 9.1E-06 50.5 7.4 86 199-287 624-711 (886)
248 KOG1586 Protein required for f 92.3 2.9 6.2E-05 39.9 12.2 102 222-324 161-272 (288)
249 PF04184 ST7: ST7 protein; In 92.0 1.5 3.2E-05 45.6 10.8 59 219-278 263-321 (539)
250 KOG4507 Uncharacterized conser 91.5 0.53 1.1E-05 49.8 7.1 97 187-291 223-322 (886)
251 COG2912 Uncharacterized conser 91.4 0.67 1.5E-05 44.5 7.2 65 220-287 186-250 (269)
252 PF09986 DUF2225: Uncharacteri 91.1 1.8 4E-05 40.0 9.6 65 220-284 123-197 (214)
253 PF10602 RPN7: 26S proteasome 90.8 1.1 2.5E-05 40.0 7.8 64 218-281 39-102 (177)
254 KOG3785 Uncharacterized conser 90.7 1.2 2.6E-05 44.8 8.3 65 217-284 153-217 (557)
255 PF10300 DUF3808: Protein of u 90.6 1.2 2.5E-05 45.9 8.7 62 218-281 308-376 (468)
256 TIGR02037 degP_htrA_DO peripla 90.5 0.43 9.4E-06 48.2 5.3 55 95-156 236-301 (428)
257 KOG3580 Tight junction protein 90.4 0.22 4.8E-06 52.4 3.1 48 88-136 410-459 (1027)
258 KOG0495 HAT repeat protein [RN 90.1 2.2 4.8E-05 45.8 10.2 84 201-287 670-754 (913)
259 PRK11186 carboxy-terminal prot 90.1 0.35 7.5E-06 52.0 4.4 39 95-134 246-284 (667)
260 cd00986 PDZ_LON_protease PDZ d 90.0 0.6 1.3E-05 35.5 4.6 43 106-156 9-51 (79)
261 KOG1941 Acetylcholine receptor 89.8 0.72 1.6E-05 46.4 6.0 64 219-282 166-236 (518)
262 KOG1892 Actin filament-binding 89.8 0.49 1.1E-05 52.3 5.2 50 85-134 933-989 (1629)
263 TIGR00225 prc C-terminal pepti 89.7 0.32 6.9E-06 47.6 3.5 38 95-134 53-90 (334)
264 KOG2796 Uncharacterized conser 89.6 4.6 0.0001 39.2 11.1 100 194-296 187-295 (366)
265 KOG3606 Cell polarity protein 89.4 0.54 1.2E-05 45.2 4.7 59 92-154 170-239 (358)
266 PF07721 TPR_4: Tetratricopept 89.2 0.54 1.2E-05 28.7 3.1 24 253-276 2-25 (26)
267 KOG3553 Tax interaction protei 89.0 0.4 8.6E-06 39.7 3.0 30 103-133 57-86 (124)
268 COG3118 Thioredoxin domain-con 88.5 2.6 5.5E-05 41.2 8.7 75 199-277 119-193 (304)
269 COG3975 Predicted protease wit 88.3 0.57 1.2E-05 48.7 4.3 54 79-134 431-490 (558)
270 PF07720 TPR_3: Tetratricopept 88.1 1.3 2.8E-05 29.5 4.5 29 219-247 5-35 (36)
271 PF07720 TPR_3: Tetratricopept 87.9 1.5 3.3E-05 29.2 4.8 33 253-285 2-36 (36)
272 PRK04841 transcriptional regul 87.3 1.4 3.1E-05 47.8 7.0 66 219-284 695-763 (903)
273 COG0793 Prc Periplasmic protea 87.0 0.64 1.4E-05 47.1 3.8 49 85-134 89-140 (406)
274 COG2976 Uncharacterized protei 86.9 2.6 5.6E-05 39.0 7.2 94 219-316 93-187 (207)
275 TIGR02037 degP_htrA_DO peripla 86.8 1 2.2E-05 45.5 5.1 44 105-155 362-405 (428)
276 PRK10139 serine endoprotease; 86.6 1.1 2.4E-05 46.0 5.3 46 104-156 289-334 (455)
277 COG4976 Predicted methyltransf 86.3 1.5 3.2E-05 41.7 5.5 50 199-248 12-62 (287)
278 PRK10942 serine endoprotease; 86.1 1.2 2.7E-05 45.8 5.4 45 104-155 310-354 (473)
279 TIGR02038 protease_degS peripl 85.8 1 2.2E-05 44.6 4.4 44 105-155 278-321 (351)
280 PLN00049 carboxyl-terminal pro 85.6 0.86 1.9E-05 45.7 3.9 28 106-134 103-130 (389)
281 KOG3550 Receptor targeting pro 85.6 1.2 2.5E-05 39.5 4.2 49 87-135 92-145 (207)
282 KOG0546 HSP90 co-chaperone CPR 85.4 0.45 9.8E-06 47.3 1.7 66 220-288 280-345 (372)
283 PF10373 EST1_DNA_bind: Est1 D 85.3 1.8 3.9E-05 40.1 5.6 45 234-281 1-45 (278)
284 PF15015 NYD-SP12_N: Spermatog 85.1 3 6.5E-05 42.7 7.3 56 220-278 233-288 (569)
285 PRK04841 transcriptional regul 85.0 3 6.5E-05 45.4 8.0 62 220-281 457-520 (903)
286 PF09613 HrpB1_HrpK: Bacterial 85.0 22 0.00048 31.7 12.0 55 211-268 39-94 (160)
287 KOG4340 Uncharacterized conser 84.7 3.8 8.3E-05 40.5 7.6 64 211-277 39-103 (459)
288 COG3118 Thioredoxin domain-con 84.5 19 0.00042 35.2 12.3 45 237-284 224-268 (304)
289 PRK10898 serine endoprotease; 84.2 1.9 4.1E-05 42.7 5.5 28 105-133 279-306 (353)
290 KOG1070 rRNA processing protei 83.2 21 0.00045 41.7 13.4 97 220-319 1535-1638(1710)
291 PF05843 Suf: Suppressor of fo 83.2 19 0.0004 34.3 11.7 106 220-328 40-150 (280)
292 COG3071 HemY Uncharacterized e 82.5 11 0.00023 38.2 9.9 68 226-296 305-372 (400)
293 KOG3209 WW domain-containing p 82.3 2.1 4.6E-05 46.1 5.1 55 79-133 892-951 (984)
294 PF13281 DUF4071: Domain of un 82.2 36 0.00078 34.4 13.6 68 218-287 182-261 (374)
295 PRK10139 serine endoprotease; 81.7 0.65 1.4E-05 47.6 1.2 45 105-156 390-434 (455)
296 PF08631 SPO22: Meiosis protei 81.4 9.3 0.0002 36.3 8.9 56 226-281 4-65 (278)
297 KOG2471 TPR repeat-containing 81.3 1.9 4E-05 45.0 4.2 68 220-287 288-370 (696)
298 PF13281 DUF4071: Domain of un 81.3 58 0.0013 32.9 14.7 104 218-329 144-254 (374)
299 PRK10779 zinc metallopeptidase 81.1 2.8 6E-05 42.8 5.5 46 106-158 222-267 (449)
300 KOG3542 cAMP-regulated guanine 80.1 1.1 2.4E-05 48.0 2.2 39 94-133 549-589 (1283)
301 KOG2610 Uncharacterized conser 79.6 4.6 9.9E-05 40.5 6.1 56 220-278 180-235 (491)
302 PF10516 SHNi-TPR: SHNi-TPR; 79.5 3.3 7.1E-05 28.1 3.7 28 254-281 3-30 (38)
303 PF07721 TPR_4: Tetratricopept 79.4 2.8 6.2E-05 25.4 3.1 23 218-240 4-26 (26)
304 KOG0530 Protein farnesyltransf 78.1 6.6 0.00014 38.0 6.6 78 207-287 68-148 (318)
305 PRK10942 serine endoprotease; 78.0 0.99 2.2E-05 46.6 1.1 45 105-156 408-452 (473)
306 PF10516 SHNi-TPR: SHNi-TPR; 77.9 3 6.5E-05 28.2 3.1 27 219-245 5-31 (38)
307 KOG1070 rRNA processing protei 77.8 83 0.0018 37.1 15.7 151 159-325 1537-1694(1710)
308 PF04781 DUF627: Protein of un 77.5 18 0.00039 30.4 8.2 93 221-315 2-105 (111)
309 PF04184 ST7: ST7 protein; In 77.1 26 0.00057 36.7 11.0 95 198-295 275-389 (539)
310 PF14863 Alkyl_sulf_dimr: Alky 76.8 10 0.00022 32.9 6.9 54 214-270 69-122 (141)
311 PRK13184 pknD serine/threonine 76.7 14 0.0003 41.5 9.5 90 193-286 486-586 (932)
312 PF08424 NRDE-2: NRDE-2, neces 76.7 77 0.0017 30.8 16.0 170 157-331 4-184 (321)
313 PF08238 Sel1: Sel1 repeat; I 76.5 5.7 0.00012 25.4 4.1 30 253-282 2-38 (39)
314 PF09613 HrpB1_HrpK: Bacterial 76.4 11 0.00024 33.6 7.1 107 219-329 14-121 (160)
315 KOG3209 WW domain-containing p 76.3 8 0.00017 42.0 7.2 50 85-134 649-703 (984)
316 KOG1941 Acetylcholine receptor 76.3 21 0.00045 36.3 9.7 66 217-282 124-192 (518)
317 TIGR01713 typeII_sec_gspC gene 75.9 4.9 0.00011 38.3 5.1 55 95-156 179-235 (259)
318 PF09986 DUF2225: Uncharacteri 75.7 35 0.00076 31.5 10.6 53 194-246 137-196 (214)
319 PF11846 DUF3366: Domain of un 75.7 10 0.00022 33.7 6.9 51 230-284 126-176 (193)
320 PF11817 Foie-gras_1: Foie gra 75.5 18 0.0004 33.7 8.9 61 218-278 181-244 (247)
321 PF02259 FAT: FAT domain; Int 75.4 11 0.00023 35.8 7.4 62 220-284 257-341 (352)
322 KOG3824 Huntingtin interacting 75.2 7.7 0.00017 38.5 6.3 66 194-262 128-194 (472)
323 smart00671 SEL1 Sel1-like repe 74.8 7.2 0.00016 24.4 4.2 30 253-282 2-35 (36)
324 TIGR02561 HrpB1_HrpK type III 74.4 62 0.0013 28.7 11.4 45 220-267 49-93 (153)
325 cd02682 MIT_AAA_Arch MIT: doma 74.1 17 0.00036 28.4 6.8 56 252-313 6-61 (75)
326 KOG3129 26S proteasome regulat 74.1 2.6 5.7E-05 39.2 2.7 31 105-136 139-169 (231)
327 COG3947 Response regulator con 74.0 9.1 0.0002 37.7 6.4 56 220-278 284-339 (361)
328 COG3629 DnrI DNA-binding trans 73.9 16 0.00034 35.5 8.0 60 219-281 157-216 (280)
329 TIGR00054 RIP metalloprotease 73.8 3.6 7.8E-05 41.7 3.8 46 105-157 203-248 (420)
330 KOG1310 WD40 repeat protein [G 73.3 8.3 0.00018 40.7 6.2 88 216-309 375-466 (758)
331 TIGR03504 FimV_Cterm FimV C-te 72.6 7.5 0.00016 27.1 4.1 28 255-282 2-29 (44)
332 PRK10941 hypothetical protein; 72.0 20 0.00043 34.4 8.2 51 199-249 198-249 (269)
333 KOG1550 Extracellular protein 71.8 74 0.0016 33.4 13.2 65 215-284 325-396 (552)
334 KOG2396 HAT (Half-A-TPR) repea 71.8 28 0.00061 36.5 9.6 82 203-287 92-175 (568)
335 PF08424 NRDE-2: NRDE-2, neces 71.7 1E+02 0.0022 30.0 13.2 54 231-287 47-100 (321)
336 KOG3651 Protein kinase C, alph 71.6 2.6 5.7E-05 41.3 2.1 76 94-173 17-94 (429)
337 cd02682 MIT_AAA_Arch MIT: doma 71.0 5.9 0.00013 30.9 3.6 26 219-244 10-35 (75)
338 PF10255 Paf67: RNA polymerase 69.5 7.4 0.00016 39.6 4.9 60 220-280 127-192 (404)
339 PRK10779 zinc metallopeptidase 68.8 3.9 8.4E-05 41.8 2.8 44 106-156 127-170 (449)
340 PF04212 MIT: MIT (microtubule 68.7 45 0.00098 24.7 8.2 29 253-281 6-34 (69)
341 TIGR03504 FimV_Cterm FimV C-te 68.4 8.9 0.00019 26.8 3.7 25 219-243 3-27 (44)
342 PF04212 MIT: MIT (microtubule 68.4 10 0.00022 28.2 4.4 28 217-244 7-34 (69)
343 KOG1550 Extracellular protein 68.2 20 0.00043 37.7 8.0 62 218-284 291-360 (552)
344 PF12854 PPR_1: PPR repeat 68.1 12 0.00025 24.2 4.0 25 253-277 8-32 (34)
345 KOG3617 WD40 and TPR repeat-co 68.1 43 0.00094 37.4 10.4 49 225-278 836-884 (1416)
346 COG0790 FOG: TPR repeat, SEL1 67.5 67 0.0015 29.9 10.8 81 200-287 173-272 (292)
347 KOG3783 Uncharacterized conser 67.4 24 0.00052 37.1 8.1 65 219-283 453-522 (546)
348 KOG2610 Uncharacterized conser 67.1 27 0.00058 35.2 8.0 83 203-285 124-208 (491)
349 PF04910 Tcf25: Transcriptiona 67.1 86 0.0019 31.2 11.9 107 208-315 32-166 (360)
350 PF15015 NYD-SP12_N: Spermatog 66.9 32 0.0007 35.5 8.7 84 222-308 190-282 (569)
351 COG3629 DnrI DNA-binding trans 66.9 24 0.00052 34.2 7.6 61 252-327 153-213 (280)
352 KOG1915 Cell cycle control pro 66.6 44 0.00096 35.1 9.7 58 226-286 448-505 (677)
353 cd02681 MIT_calpain7_1 MIT: do 65.9 8.7 0.00019 29.9 3.6 24 220-243 11-34 (76)
354 COG3914 Spy Predicted O-linked 65.9 45 0.00098 35.6 9.8 66 220-285 106-175 (620)
355 TIGR00054 RIP metalloprotease 65.2 5.6 0.00012 40.4 3.1 28 105-133 128-155 (420)
356 PLN00207 polyribonucleotide nu 65.2 31 0.00068 38.6 9.0 16 125-140 109-124 (891)
357 KOG1585 Protein required for f 65.0 89 0.0019 30.3 10.7 67 216-282 111-180 (308)
358 KOG3616 Selective LIM binding 65.0 1.1E+02 0.0025 34.0 12.6 50 225-278 742-791 (1636)
359 PF11207 DUF2989: Protein of u 64.8 49 0.0011 30.7 8.8 51 224-274 149-200 (203)
360 KOG1585 Protein required for f 64.8 51 0.0011 31.9 9.1 61 215-278 90-156 (308)
361 KOG3938 RGS-GAIP interacting p 64.5 4.8 0.0001 38.8 2.3 44 90-133 134-177 (334)
362 KOG3617 WD40 and TPR repeat-co 64.1 31 0.00068 38.5 8.4 64 216-280 912-995 (1416)
363 KOG3605 Beta amyloid precursor 62.8 3.6 7.9E-05 44.0 1.3 55 79-133 639-701 (829)
364 PF08631 SPO22: Meiosis protei 62.7 1.3E+02 0.0028 28.5 11.8 53 218-270 38-102 (278)
365 cd02683 MIT_1 MIT: domain cont 62.4 13 0.00028 28.9 4.0 22 221-242 12-33 (77)
366 PF12862 Apc5: Anaphase-promot 62.3 42 0.00091 26.4 7.1 32 218-249 44-75 (94)
367 PF02259 FAT: FAT domain; Int 62.0 90 0.0019 29.5 10.6 72 216-287 185-293 (352)
368 KOG3364 Membrane protein invol 61.8 8.5 0.00018 33.7 3.1 34 216-249 72-105 (149)
369 KOG2581 26S proteasome regulat 60.7 30 0.00065 35.5 7.2 100 219-325 251-357 (493)
370 COG3898 Uncharacterized membra 60.1 1.6E+02 0.0035 30.5 12.1 36 207-242 179-215 (531)
371 COG0265 DegQ Trypsin-like seri 60.0 12 0.00026 36.6 4.3 28 106-134 271-298 (347)
372 COG4649 Uncharacterized protei 59.1 46 0.001 30.7 7.4 24 220-243 172-195 (221)
373 COG4941 Predicted RNA polymera 59.1 32 0.0007 34.5 6.9 75 212-287 326-400 (415)
374 COG3914 Spy Predicted O-linked 58.6 58 0.0013 34.8 9.1 110 201-313 50-170 (620)
375 PF01535 PPR: PPR repeat; Int 58.0 17 0.00037 21.6 3.3 29 254-282 2-30 (31)
376 KOG4814 Uncharacterized conser 58.0 63 0.0014 35.1 9.2 59 220-281 399-457 (872)
377 KOG4151 Myosin assembly protei 57.6 23 0.0005 38.7 6.2 84 201-287 72-162 (748)
378 PF05843 Suf: Suppressor of fo 57.1 50 0.0011 31.4 7.9 65 220-287 6-71 (280)
379 PF11874 DUF3394: Domain of un 56.4 12 0.00027 34.0 3.4 38 95-134 113-150 (183)
380 TIGR02561 HrpB1_HrpK type III 56.1 32 0.00069 30.5 5.8 102 224-329 19-121 (153)
381 PF12854 PPR_1: PPR repeat 56.0 27 0.00059 22.4 4.1 28 213-240 5-32 (34)
382 smart00745 MIT Microtubule Int 55.5 70 0.0015 24.0 7.1 26 256-281 12-37 (77)
383 PF13041 PPR_2: PPR repeat fam 55.5 32 0.0007 23.4 4.7 32 253-284 4-35 (50)
384 TIGR00756 PPR pentatricopeptid 55.1 29 0.00062 20.8 4.1 29 254-282 2-30 (35)
385 TIGR03279 cyano_FeS_chp putati 55.0 8.3 0.00018 39.6 2.2 24 109-133 2-25 (433)
386 KOG2041 WD40 repeat protein [G 54.5 90 0.0019 34.5 9.7 85 220-316 827-921 (1189)
387 KOG2053 Mitochondrial inherita 54.3 77 0.0017 35.4 9.4 56 226-284 20-75 (932)
388 smart00745 MIT Microtubule Int 54.0 26 0.00057 26.4 4.4 25 219-243 12-36 (77)
389 PF12464 Mac: Maltose acetyltr 53.3 25 0.00054 24.8 4.0 38 291-330 13-52 (55)
390 KOG4151 Myosin assembly protei 53.1 32 0.00069 37.7 6.3 82 217-298 55-140 (748)
391 smart00386 HAT HAT (Half-A-TPR 53.1 29 0.00062 20.6 3.8 26 229-257 1-26 (33)
392 PF09205 DUF1955: Domain of un 53.0 1.2E+02 0.0025 26.9 8.6 67 215-284 85-152 (161)
393 cd02680 MIT_calpain7_2 MIT: do 52.4 21 0.00046 27.8 3.6 16 266-281 20-35 (75)
394 KOG3580 Tight junction protein 52.3 19 0.00042 38.5 4.4 50 83-134 6-67 (1027)
395 PRK15326 type III secretion sy 52.2 51 0.0011 26.1 5.8 51 266-328 21-72 (80)
396 cd02679 MIT_spastin MIT: domai 51.5 24 0.00052 27.7 3.9 27 255-281 11-37 (79)
397 PF13812 PPR_3: Pentatricopept 51.3 39 0.00085 20.5 4.3 29 254-282 3-31 (34)
398 TIGR02860 spore_IV_B stage IV 51.3 17 0.00037 37.0 3.8 54 93-156 96-157 (402)
399 cd02678 MIT_VPS4 MIT: domain c 50.4 29 0.00064 26.4 4.2 23 220-242 11-33 (75)
400 COG4455 ImpE Protein of avirul 50.3 63 0.0014 30.8 7.0 60 224-286 10-69 (273)
401 PF04495 GRASP55_65: GRASP55/6 49.6 17 0.00038 31.4 3.1 41 93-134 26-72 (138)
402 COG5187 RPN7 26S proteasome re 49.2 93 0.002 30.9 8.2 86 196-281 51-144 (412)
403 cd02680 MIT_calpain7_2 MIT: do 48.5 23 0.0005 27.6 3.3 28 217-244 8-35 (75)
404 PF14685 Tricorn_PDZ: Tricorn 48.4 27 0.00059 28.0 3.8 38 95-133 3-49 (88)
405 PF13041 PPR_2: PPR repeat fam 48.1 85 0.0018 21.3 6.1 28 220-247 8-37 (50)
406 PF07079 DUF1347: Protein of u 47.6 74 0.0016 33.2 7.6 54 220-277 467-520 (549)
407 PF10952 DUF2753: Protein of u 47.5 55 0.0012 28.3 5.7 65 220-284 6-86 (140)
408 cd02684 MIT_2 MIT: domain cont 47.4 31 0.00067 26.6 3.9 16 266-281 20-35 (75)
409 KOG2047 mRNA splicing factor [ 47.4 4.3E+02 0.0092 29.1 15.1 86 199-285 364-457 (835)
410 PF01436 NHL: NHL repeat; Int 47.3 18 0.00039 22.3 2.1 18 92-111 2-19 (28)
411 cd02656 MIT MIT: domain contai 47.3 39 0.00084 25.5 4.4 16 266-281 20-35 (75)
412 cd02681 MIT_calpain7_1 MIT: do 47.1 37 0.00079 26.4 4.3 29 253-281 7-35 (76)
413 KOG0529 Protein geranylgeranyl 47.1 96 0.0021 31.8 8.2 77 208-287 101-184 (421)
414 COG5191 Uncharacterized conser 46.8 27 0.00059 34.8 4.3 76 211-289 102-180 (435)
415 KOG2471 TPR repeat-containing 46.0 36 0.00078 35.9 5.1 46 216-264 336-381 (696)
416 PF07219 HemY_N: HemY protein 45.7 86 0.0019 25.5 6.6 32 216-247 60-91 (108)
417 cd02683 MIT_1 MIT: domain cont 45.1 38 0.00081 26.3 4.1 29 253-281 7-35 (77)
418 KOG3552 FERM domain protein FR 45.0 35 0.00077 38.3 5.1 67 89-163 61-127 (1298)
419 cd02677 MIT_SNX15 MIT: domain 44.4 34 0.00073 26.5 3.7 24 220-243 11-34 (75)
420 PF01333 Apocytochr_F_C: Apocy 43.6 23 0.0005 29.9 2.8 33 87-132 24-56 (118)
421 PF09670 Cas_Cas02710: CRISPR- 42.8 1.4E+02 0.0031 29.9 8.9 63 218-281 134-198 (379)
422 PHA02537 M terminase endonucle 42.7 67 0.0014 30.3 6.1 20 265-284 191-210 (230)
423 KOG0276 Vesicle coat complex C 42.1 1.8E+02 0.0039 31.6 9.6 60 219-278 670-747 (794)
424 KOG0529 Protein geranylgeranyl 42.1 64 0.0014 33.0 6.1 58 227-287 87-146 (421)
425 PF10579 Rapsyn_N: Rapsyn N-te 41.6 1.1E+02 0.0025 24.2 6.2 47 198-244 22-72 (80)
426 PF04781 DUF627: Protein of un 40.8 48 0.001 27.8 4.3 47 232-281 61-107 (111)
427 KOG1914 mRNA cleavage and poly 40.4 1.5E+02 0.0033 31.6 8.7 75 204-281 8-82 (656)
428 COG0790 FOG: TPR repeat, SEL1 39.3 3.2E+02 0.0069 25.3 11.7 61 218-283 151-222 (292)
429 cd02679 MIT_spastin MIT: domai 39.3 50 0.0011 25.9 4.0 23 220-242 13-35 (79)
430 KOG1464 COP9 signalosome, subu 38.6 84 0.0018 31.0 6.1 48 230-277 42-90 (440)
431 PF04910 Tcf25: Transcriptiona 37.7 1E+02 0.0022 30.8 6.8 37 242-281 33-69 (360)
432 PF10373 EST1_DNA_bind: Est1 D 37.6 1.4E+02 0.003 27.3 7.5 60 202-264 2-62 (278)
433 PF02064 MAS20: MAS20 protein 37.6 62 0.0013 27.5 4.6 31 218-248 66-96 (121)
434 PF10255 Paf67: RNA polymerase 36.8 87 0.0019 32.0 6.2 25 219-243 168-192 (404)
435 PF09797 NatB_MDM20: N-acetylt 36.8 1.3E+02 0.0029 29.5 7.5 48 228-278 196-243 (365)
436 PF10345 Cohesin_load: Cohesin 35.9 5.5E+02 0.012 27.2 12.6 65 219-284 63-131 (608)
437 KOG0739 AAA+-type ATPase [Post 35.8 1.1E+02 0.0025 30.5 6.6 24 220-243 15-38 (439)
438 smart00299 CLH Clathrin heavy 34.9 2.6E+02 0.0055 23.0 8.0 46 227-276 19-64 (140)
439 KOG2709 Uncharacterized conser 34.5 59 0.0013 33.5 4.6 30 252-281 22-51 (560)
440 KOG0276 Vesicle coat complex C 34.3 86 0.0019 33.9 5.8 68 205-283 630-697 (794)
441 PF01239 PPTA: Protein prenylt 33.9 95 0.002 19.2 4.0 29 234-265 2-30 (31)
442 PF00244 14-3-3: 14-3-3 protei 33.6 1.1E+02 0.0024 28.5 6.1 52 231-282 142-199 (236)
443 COG3014 Uncharacterized protei 32.6 1.5E+02 0.0033 30.0 6.9 63 219-281 62-154 (449)
444 KOG0530 Protein farnesyltransf 32.2 4.9E+02 0.011 25.6 10.1 78 204-284 99-179 (318)
445 cd02678 MIT_VPS4 MIT: domain c 31.8 90 0.0019 23.7 4.3 28 254-281 8-35 (75)
446 PRK03760 hypothetical protein; 31.8 52 0.0011 27.6 3.2 36 93-132 79-114 (117)
447 TIGR02710 CRISPR-associated pr 31.5 3.3E+02 0.0072 27.6 9.3 58 220-277 135-196 (380)
448 cd02656 MIT MIT: domain contai 31.5 94 0.002 23.3 4.3 17 268-284 29-45 (75)
449 COG2015 Alkyl sulfatase and re 31.0 1.1E+02 0.0025 32.2 6.0 60 219-281 456-519 (655)
450 TIGR02508 type_III_yscG type I 31.0 3.2E+02 0.0068 23.0 7.5 68 203-278 25-94 (115)
451 PF03791 KNOX2: KNOX2 domain ; 29.8 87 0.0019 22.8 3.6 37 289-327 5-43 (52)
452 KOG3551 Syntrophins (type beta 29.5 36 0.00079 34.6 2.1 47 94-143 97-145 (506)
453 KOG1839 Uncharacterized protei 29.4 2.3E+02 0.005 33.1 8.5 62 220-281 1020-1086(1236)
454 COG2912 Uncharacterized conser 29.1 1E+02 0.0022 29.9 5.0 49 201-249 200-249 (269)
455 PF03745 DUF309: Domain of unk 28.9 2.4E+02 0.0052 20.8 6.7 57 218-274 2-61 (62)
456 COG3947 Response regulator con 28.6 1.7E+02 0.0038 29.0 6.5 31 254-284 281-311 (361)
457 PF10345 Cohesin_load: Cohesin 28.6 2.6E+02 0.0057 29.6 8.6 60 217-276 363-428 (608)
458 PF04053 Coatomer_WDAD: Coatom 28.5 1.1E+02 0.0023 31.5 5.5 48 223-278 326-373 (443)
459 PF10781 DSRB: Dextransucrase 28.2 82 0.0018 23.5 3.2 32 79-111 26-60 (62)
460 PRK10708 hypothetical protein; 28.2 76 0.0016 23.6 3.1 31 80-111 27-60 (62)
461 COG4649 Uncharacterized protei 28.0 3.7E+02 0.008 24.9 8.1 59 219-278 62-120 (221)
462 PF11846 DUF3366: Domain of un 28.0 2.6E+02 0.0056 24.7 7.3 46 203-248 132-177 (193)
463 KOG3549 Syntrophins (type gamm 27.8 87 0.0019 31.6 4.4 57 80-136 49-111 (505)
464 KOG0686 COP9 signalosome, subu 27.0 6.3E+02 0.014 26.2 10.3 128 152-281 117-258 (466)
465 KOG0985 Vesicle coat protein c 26.9 2.7E+02 0.006 32.3 8.3 106 213-329 1192-1307(1666)
466 smart00101 14_3_3 14-3-3 homol 26.5 1.8E+02 0.0038 27.7 6.1 52 231-282 144-201 (244)
467 PRK14533 groES co-chaperonin G 26.3 99 0.0022 24.9 3.8 25 108-133 39-63 (91)
468 COG1430 Uncharacterized conser 26.3 81 0.0017 27.0 3.4 24 108-133 97-120 (126)
469 PRK13184 pknD serine/threonine 26.3 5.4E+02 0.012 29.3 10.7 67 216-284 553-623 (932)
470 COG3898 Uncharacterized membra 25.7 7.2E+02 0.016 25.9 10.4 53 224-279 163-215 (531)
471 KOG1839 Uncharacterized protei 24.7 2.2E+02 0.0047 33.2 7.3 89 220-310 978-1079(1236)
472 KOG0985 Vesicle coat protein c 24.6 1.1E+03 0.024 27.7 12.4 61 214-282 1103-1163(1666)
473 KOG1915 Cell cycle control pro 24.6 8.8E+02 0.019 25.9 11.7 80 201-284 160-239 (677)
474 KOG2758 Translation initiation 24.4 7.5E+02 0.016 25.0 10.1 64 216-280 130-195 (432)
475 KOG3807 Predicted membrane pro 23.8 5.6E+02 0.012 26.2 9.1 29 255-283 278-306 (556)
476 cd02677 MIT_SNX15 MIT: domain 23.4 1.3E+02 0.0028 23.2 3.8 27 255-281 9-35 (75)
477 PF12753 Nro1: Nuclear pore co 23.3 1.7E+02 0.0036 30.0 5.5 31 231-267 334-365 (404)
478 PF09477 Type_III_YscG: Bacter 23.2 4.6E+02 0.01 22.2 8.8 66 204-277 27-94 (116)
479 KOG2047 mRNA splicing factor [ 23.1 5.3E+02 0.011 28.5 9.3 80 203-283 498-581 (835)
480 KOG0292 Vesicle coat complex C 23.0 5E+02 0.011 29.7 9.3 266 15-302 784-1134(1202)
481 COG3480 SdrC Predicted secrete 22.5 72 0.0016 31.7 2.7 36 91-133 121-156 (342)
482 COG4043 Preprotein translocase 22.5 75 0.0016 26.4 2.4 38 118-155 28-65 (111)
483 cd00280 TRFH Telomeric Repeat 22.4 1.9E+02 0.0042 26.7 5.2 27 260-287 119-145 (200)
484 PTZ00414 10 kDa heat shock pro 22.0 1.3E+02 0.0027 24.8 3.7 23 109-132 49-71 (100)
485 cd02684 MIT_2 MIT: domain cont 21.8 1.6E+02 0.0035 22.6 4.1 24 220-243 11-34 (75)
486 PF15297 CKAP2_C: Cytoskeleton 21.8 2.4E+02 0.0052 28.4 6.2 66 222-287 109-175 (353)
487 PRK02693 apocytochrome f; Revi 21.7 1.2E+02 0.0026 29.6 4.0 33 87-132 218-250 (312)
488 TIGR03362 VI_chp_7 type VI sec 21.4 4.2E+02 0.0091 25.9 7.8 64 218-281 216-279 (301)
489 COG5191 Uncharacterized conser 20.8 81 0.0017 31.6 2.7 59 205-263 130-190 (435)
490 cd09243 BRO1_Brox_like Protein 20.3 8.2E+02 0.018 24.4 9.7 30 252-281 248-277 (353)
491 KOG1520 Predicted alkaloid syn 20.1 2E+02 0.0043 29.2 5.3 18 93-111 116-133 (376)
No 1
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.61 E-value=3.5e-15 Score=149.27 Aligned_cols=104 Identities=31% Similarity=0.472 Sum_probs=91.5
Q ss_pred ccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHh
Q 019871 212 KERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVR 290 (334)
Q Consensus 212 ~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~ 290 (334)
+|+..+ ++|+|.+|+++|+|++|+.+|++||+++|++++...+|||+||||..+|++++|+.+|++||++++..+..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~ 150 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTIL 150 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 455544 4599999999999999999999999999998542356999999999999999999999999999666677899
Q ss_pred cChhhHHHhcChHHHHHHHHHHHhh
Q 019871 291 TDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 291 ~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+||+|+.+|++|+|+++++...+.-
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhC
Confidence 9999999999999999998665543
No 2
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4e-14 Score=142.74 Aligned_cols=223 Identities=19% Similarity=0.329 Sum_probs=165.3
Q ss_pred hhhccceEEEeecCCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhh
Q 019871 80 QEEKYEEYEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVG 159 (334)
Q Consensus 80 ~~~~~~~~~v~l~kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G 159 (334)
|.....+|...++=-..|.+ ..+-+.||++. |.++ .|+.+++.-+-+ |.++| .+|..+-. ...|+|
T Consensus 240 f~~a~q~y~~a~el~~~it~-~~n~aA~~~e~----~~~~--~c~~~c~~a~E~----gre~r--ad~klIak-~~~r~g 305 (539)
T KOG0548|consen 240 FETAIQHYAKALELATDITY-LNNIAAVYLER----GKYA--ECIELCEKAVEV----GRELR--ADYKLIAK-ALARLG 305 (539)
T ss_pred HHHHHHHHHHHHhHhhhhHH-HHHHHHHHHhc----cHHH--HhhcchHHHHHH----hHHHH--HHHHHHHH-HHHHhh
Confidence 44555556555552244444 44556777766 5555 356777774444 77888 55555444 557799
Q ss_pred hHHHHhhcccchhhh-hchhcHHHHHHHhhchhhhhhhHH--HHHHHHHHHHHhhccCHH-HHHHHHHHHHHcCCHHHHH
Q 019871 160 PLLMKMQKRYGKMEQ-TGELSEKEIIRAERNSGVISNRVR--EIQMQNYMKKKEQKERRE-QDLREGLQLYRTGKYEVAR 235 (334)
Q Consensus 160 ~V~lkLek~~~aie~-~~~l~ek~~~~a~~n~g~~~~~l~--e~q~~~y~~~iel~~~~~-~~~nlG~al~~~g~yeeAl 235 (334)
+.|.+++++..++++ ..+++++. .+.+...+. |.++..+.....++|..+ +....|+.+|+.|+|.+|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~R-------t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHR-------TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhc-------CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHH
Confidence 999999999999985 34666653 244444443 445556666666666654 4459999999999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-HHhcChhhHHHhcChHHHHHHHHHHHh
Q 019871 236 EKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-RVRTDPDLENLRASEEFDVLLKRFDES 314 (334)
Q Consensus 236 ~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-~i~~Dpdl~~Lr~dp~F~~lL~~~~e~ 314 (334)
..|++||+.+|++ +.+|.|+|.||.++|++.+|+++++++|+++|+... ++++.-. ++...+|..+++.|++.
T Consensus 379 ~~YteAIkr~P~D---a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~a---l~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 379 KHYTEAIKRDPED---ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAA---LRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHhcCCch---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 9999999999999 689999999999999999999999999999999888 7777544 44556899999999999
Q ss_pred h----hchhHHHHHHHhhc
Q 019871 315 F----INENAINAIKSLFG 329 (334)
Q Consensus 315 ~----~~~~ai~~~k~~~~ 329 (334)
+ .+.++|..|+.+.-
T Consensus 453 le~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HhcCchhHHHHHHHHHHHH
Confidence 8 56678888887753
No 3
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.27 E-value=1.5e-11 Score=91.60 Aligned_cols=66 Identities=29% Similarity=0.397 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC-ChHHHHHHHHHHHHcCC
Q 019871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN-QVKAGLSALEDALLAGY 283 (334)
Q Consensus 215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG-~~eeAl~~lekAIelgp 283 (334)
+..++++|..+++.|+|++|+.+|+++|+++|++ +.+|+++|.||..+| ++++|++++++||+++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456699999999999999999999999999998 689999999999999 79999999999999988
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.26 E-value=4.9e-11 Score=122.54 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=120.5
Q ss_pred HHhhhhHHHHhhcccchhhhhc-hhcHHH-HHHHhhchhh--hhhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC
Q 019871 155 RQRVGPLLMKMQKRYGKMEQTG-ELSEKE-IIRAERNSGV--ISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTG 229 (334)
Q Consensus 155 ~~R~G~V~lkLek~~~aie~~~-~l~ek~-~~~a~~n~g~--~~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g 229 (334)
.-..|+||..+..+..++..+. ++.+.. ..-++-|.+. +..++.++++..|.+++++.|+.++++ |+|+++-..|
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G 334 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKG 334 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc
Confidence 4568999999999999988543 444322 1123445553 346778889999999999999999998 9999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHH
Q 019871 230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLK 309 (334)
Q Consensus 230 ~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~ 309 (334)
+..||.++|.+||.+.|++ +.+.+|+|.+|..+|++++|...|++|++..|+... +-.+-. .-+++.+.++++|.
T Consensus 335 ~V~ea~~cYnkaL~l~p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa-a~nNLa-~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 335 SVTEAVDCYNKALRLCPNH---ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA-AHNNLA-SIYKQQGNLDDAIM 409 (966)
T ss_pred chHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh-hhhhHH-HHHHhcccHHHHHH
Confidence 9999999999999999998 679999999999999999999999999999887433 333322 12455567777777
Q ss_pred HHHHhh
Q 019871 310 RFDESF 315 (334)
Q Consensus 310 ~~~e~~ 315 (334)
.|++.+
T Consensus 410 ~Ykeal 415 (966)
T KOG4626|consen 410 CYKEAL 415 (966)
T ss_pred HHHHHH
Confidence 777776
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.22 E-value=1.1e-10 Score=100.62 Aligned_cols=88 Identities=10% Similarity=0.071 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.++..|...+.++|.+...+ ++|.++.+.|+|++|+..|+++++++|++ +.+|+++|.|+..+|++++|+..|+
T Consensus 40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~---~~a~~~lg~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH---PEPVYQTGVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4557788889999999887765 99999999999999999999999999998 5799999999999999999999999
Q ss_pred HHHHcCCCCHHH
Q 019871 277 DALLAGYEDFKR 288 (334)
Q Consensus 277 kAIelgp~~~~~ 288 (334)
+||++.|++...
T Consensus 117 ~Al~~~p~~~~~ 128 (144)
T PRK15359 117 TAIKMSYADASW 128 (144)
T ss_pred HHHHhCCCChHH
Confidence 999999998764
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.21 E-value=1.5e-11 Score=126.26 Aligned_cols=173 Identities=15% Similarity=0.100 Sum_probs=120.5
Q ss_pred HHHHhhhhHHHHhhcccchhhhhc-hhcHHHHH-HHhhchhhhhhhHH--HHHHHHHHHHHhhccCHHHHH-HHHHHHHH
Q 019871 153 TIRQRVGPLLMKMQKRYGKMEQTG-ELSEKEII-RAERNSGVISNRVR--EIQMQNYMKKKEQKERREQDL-REGLQLYR 227 (334)
Q Consensus 153 ai~~R~G~V~lkLek~~~aie~~~-~l~ek~~~-~a~~n~g~~~~~l~--e~q~~~y~~~iel~~~~~~~~-nlG~al~~ 227 (334)
.+++..|++...+++..++-+.++ ++.....| -+|-|.|-+.+... ..+++.|.++..++|+..+++ |+|++|-+
T Consensus 185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 185 CARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE 264 (966)
T ss_pred hhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH
Confidence 455667777777666666665333 22222222 24666665554444 445789999999999988876 99999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHH
Q 019871 228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVL 307 (334)
Q Consensus 228 ~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~l 307 (334)
++.|++|+.+|.+|+.+.|++ +.+|-|+||+|..+|..+-||..|++||++.|...+ +..+-.. .|++.++..+.
T Consensus 265 ~~~~d~Avs~Y~rAl~lrpn~---A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~-Ay~Nlan-ALkd~G~V~ea 339 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLRPNH---AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD-AYNNLAN-ALKDKGSVTEA 339 (966)
T ss_pred HhcchHHHHHHHHHHhcCCcc---hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH-HHhHHHH-HHHhccchHHH
Confidence 999999999999999999998 679999999999999999999999999999997443 2222211 23333344444
Q ss_pred HHH---------------------HHHhhhchhHHHHHHHhhcc
Q 019871 308 LKR---------------------FDESFINENAINAIKSLFGL 330 (334)
Q Consensus 308 L~~---------------------~~e~~~~~~ai~~~k~~~~~ 330 (334)
.+. |.|....+.|+..++..|.+
T Consensus 340 ~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 340 VDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 444 44555556677777666553
No 7
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=6.9e-11 Score=112.80 Aligned_cols=89 Identities=20% Similarity=0.210 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871 195 NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 195 ~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
.+..+.++..|.++|++.|.++..| |++-+|.++|+|+.|++.++.||.+||.+ +.+|-.+|.+|..+|++++|++
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y---skay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY---SKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH---HHHHHHHHHHHHccCcHHHHHH
Confidence 3344556677777777777776666 77777777777777777777777777776 5677777777777777777777
Q ss_pred HHHHHHHcCCCCH
Q 019871 274 ALEDALLAGYEDF 286 (334)
Q Consensus 274 ~lekAIelgp~~~ 286 (334)
.|+|||+++|++.
T Consensus 171 aykKaLeldP~Ne 183 (304)
T KOG0553|consen 171 AYKKALELDPDNE 183 (304)
T ss_pred HHHhhhccCCCcH
Confidence 7777777777754
No 8
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=1.7e-10 Score=110.20 Aligned_cols=97 Identities=23% Similarity=0.275 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChh
Q 019871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPD 294 (334)
Q Consensus 215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpd 294 (334)
++...+.|+-+++.++|++|+..|++||+++|++ +..|.|||.+|.+||+++.|+++|+.||.++|.+.+.+.+- .
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL-G 156 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL-G 156 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH-H
Confidence 4456699999999999999999999999999999 68999999999999999999999999999999977733322 2
Q ss_pred hHHHhcChHHHHHHHHHHHhhh
Q 019871 295 LENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 295 l~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
++ .-...+|..+++.|++.+.
T Consensus 157 ~A-~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 157 LA-YLALGKYEEAIEAYKKALE 177 (304)
T ss_pred HH-HHccCcHHHHHHHHHhhhc
Confidence 33 3345789999999999983
No 9
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.14 E-value=3.5e-10 Score=97.38 Aligned_cols=107 Identities=14% Similarity=0.138 Sum_probs=90.0
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 203 ~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
.-+.++++++|+. .+++|.++++.|+|++|+..|++++.++|.+ ..+|+++|.++..+|++++|+.+|++|++++
T Consensus 14 ~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWS---WRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3466778888774 6689999999999999999999999999998 6899999999999999999999999999999
Q ss_pred CCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 283 YEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 283 p~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
|.+......- .. .+....++.++++.|++.+.
T Consensus 89 p~~~~a~~~l-g~-~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 ASHPEPVYQT-GV-CLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCCcHHHHHH-HH-HHHHcCCHHHHHHHHHHHHH
Confidence 9987733221 22 34556788999998888774
No 10
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.13 E-value=2.3e-10 Score=84.44 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
+.+|..+++.|+|++|+.+|+++++.+|++ +.+|+.+|.|+..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDN---PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTH---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 368999999999999999999999999998 68999999999999999999999999999999863
No 11
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=1.2e-09 Score=104.48 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=87.3
Q ss_pred Hhhchhhhh--hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Q 019871 186 AERNSGVIS--NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (334)
Q Consensus 186 a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay 262 (334)
.+++.|.++ .+..+.++..|.++++++|+....+ ++|..+...|+|++|+..|+++++++|++ ..+|+|+|.+|
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l 142 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Confidence 355566554 3445777889999999999987765 99999999999999999999999999998 67999999999
Q ss_pred HHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 263 SKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 263 ~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
...|++++|+++|+++++++|++..
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999863
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.08 E-value=1.7e-09 Score=112.85 Aligned_cols=156 Identities=10% Similarity=0.103 Sum_probs=105.7
Q ss_pred HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhh--HHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC
Q 019871 156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNR--VREIQMQNYMKKKEQKERREQDL-REGLQLYRTGK 230 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~--l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~ 230 (334)
...|.++..+++..++++......+.+ ....+.+.|.+... ..+.++..|.++++++|++...+ ++|.+++..|+
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 445666667677777666322111110 11233444444332 24556677888888888876654 88999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHH
Q 019871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKR 310 (334)
Q Consensus 231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~ 310 (334)
|++|+.+|+++++++|++ ..+|+++|++|.++|++++|+..|+++++..|.+......-. ..+....+|+++++.
T Consensus 415 ~~~A~~~~~kal~l~P~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg--~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDF---IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYG--ELLLDQNKFDEAIEK 489 (615)
T ss_pred HHHHHHHHHHHHHcCccC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHH--HHHHHccCHHHHHHH
Confidence 999999999999999987 568889999999999999999999999998888665222111 123344567778777
Q ss_pred HHHhhh
Q 019871 311 FDESFI 316 (334)
Q Consensus 311 ~~e~~~ 316 (334)
|++.+.
T Consensus 490 ~~~Al~ 495 (615)
T TIGR00990 490 FDTAIE 495 (615)
T ss_pred HHHHHh
Confidence 777663
No 13
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.00 E-value=5.3e-09 Score=103.01 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871 196 RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA 274 (334)
Q Consensus 196 ~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~ 274 (334)
+..+.++..|.++++++|++..++ ++|.+++++|+|++|+..++++++++|++ +.+|+++|.+|..+|++++|+.+
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~---~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL---AKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHhCCHHHHHHH
Confidence 334557788999999999987765 99999999999999999999999999998 68999999999999999999999
Q ss_pred HHHHHHcCCCCHH
Q 019871 275 LEDALLAGYEDFK 287 (334)
Q Consensus 275 lekAIelgp~~~~ 287 (334)
|++|++++|.+..
T Consensus 93 ~~~al~l~P~~~~ 105 (356)
T PLN03088 93 LEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHhCCCCHH
Confidence 9999999999654
No 14
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.91 E-value=1.6e-08 Score=84.10 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.+...+.+.++..|.+...+ ++|.+++.+|+|++|+..|+++++.+|++ ...++++|.||...|++++|+..|+
T Consensus 33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD---PRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445556666677777765554 88888888888888888888888888887 5688888888888888888888888
Q ss_pred HHHHcCCCCH
Q 019871 277 DALLAGYEDF 286 (334)
Q Consensus 277 kAIelgp~~~ 286 (334)
++++++|++.
T Consensus 110 ~al~~~p~~~ 119 (135)
T TIGR02552 110 LAIEICGENP 119 (135)
T ss_pred HHHHhccccc
Confidence 8888888643
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=98.90 E-value=1.8e-08 Score=104.38 Aligned_cols=112 Identities=16% Similarity=0.035 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
+.++..+.++++++|++...+ .+|.++...|++++|+..|++|++++|++ +.+|+++|.+|..+|++++|+.+|++
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS---ADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456778889999999987776 89999999999999999999999999998 67999999999999999999999999
Q ss_pred HHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 278 ALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 278 AIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
|++++|.+....... ... +....+|++++..+++.+
T Consensus 398 Al~l~P~~~~~~~~~-~~~-~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 398 CLKLDPTRAAAGITK-LWI-TYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHhcCCCChhhHHHH-HHH-HHhccCHHHHHHHHHHHH
Confidence 999999976532211 111 222345666666666554
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.90 E-value=2.9e-08 Score=103.63 Aligned_cols=126 Identities=9% Similarity=0.027 Sum_probs=97.1
Q ss_pred hhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCH
Q 019871 157 RVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKY 231 (334)
Q Consensus 157 R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~y 231 (334)
..|.++..++++..+++......+.. ....+.+.|.+.. +..+.++..|.++++++|+....+ ++|.+++++|+|
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCH
Confidence 45666777777777766322111111 0123444444443 335667889999999999876654 999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 232 eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
++|+..|+++++.+|++ +.+|+++|.+|..+|++++|+..|++|+++.|.+
T Consensus 450 ~eA~~~~~~al~~~P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 450 ASSMATFRRCKKNFPEA---PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 99999999999999998 5799999999999999999999999999999874
No 17
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.89 E-value=2.8e-08 Score=90.26 Aligned_cols=110 Identities=10% Similarity=0.096 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH-HHCCC--hHHHHHHHH
Q 019871 201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY-SKLNQ--VKAGLSALE 276 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay-~~lG~--~eeAl~~le 276 (334)
.+..+.++++.+|++.+.+ .+|..+...|+|++|+.+|+++++++|++ +.+++++|.++ ...|+ .++|+..|+
T Consensus 58 ~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 58 QLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN---AELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3455566666666655544 66666666666666666666666666665 45666666653 45555 366666666
Q ss_pred HHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 277 DALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 277 kAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+|++++|++.... ..-.+.. ....+|++++..|++.+
T Consensus 135 ~al~~dP~~~~al-~~LA~~~-~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 135 KALALDANEVTAL-MLLASDA-FMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHhCCCChhHH-HHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 6666666654421 1122221 22345556655555543
No 18
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.89 E-value=2.6e-08 Score=82.71 Aligned_cols=109 Identities=18% Similarity=0.152 Sum_probs=89.4
Q ss_pred HHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 204 NYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 204 ~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
.+.+.++++|.... .+.+|..+++.|+|++|+..|++++.++|++ +.+|+++|.+|..+|++++|+..|+++++.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677788887755 4599999999999999999999999999998 6899999999999999999999999999999
Q ss_pred CCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhhc
Q 019871 283 YEDFKRVRTDPDLENLRASEEFDVLLKRFDESFIN 317 (334)
Q Consensus 283 p~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~ 317 (334)
|.+......-. . ......+++.+++.|++.+..
T Consensus 82 p~~~~~~~~la-~-~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAA-E-CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHH-H-HHHHcCCHHHHHHHHHHHHHh
Confidence 99876332221 1 233456788888888777743
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.85 E-value=4.1e-08 Score=108.17 Aligned_cols=125 Identities=12% Similarity=0.087 Sum_probs=90.1
Q ss_pred hhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Q 019871 187 ERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (334)
Q Consensus 187 ~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~ 263 (334)
+.+.+.+...+ .+.+...|.++++++|+....+ ++|.++.+.|++++|+..|+++++++|++ +.+++|+|.+|.
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~---~~a~~nLA~al~ 688 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD---PALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Confidence 34444444333 3556778888888888876665 88888888888888888888888888887 578888888888
Q ss_pred HCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 264 KLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 264 ~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
.+|++++|+.+|++|+++.|++...-..=+.+. ...-.|+.+++.|.....
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~--~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQN--QQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH--HHHHHHHHHHHHHHHHhh
Confidence 888888888888888888887655333223322 222357777777766653
No 20
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.84 E-value=5.7e-08 Score=92.96 Aligned_cols=112 Identities=12% Similarity=0.154 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhhcc---C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871 199 EIQMQNYMKKKEQKE---R--REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 199 e~q~~~y~~~iel~~---~--~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
|.++..+.+.++..+ . ....+++|.++...|++++|+..|+++++++|++ +.+|+++|.+|..+|++++|+.
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM---ADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCCCHHHHHH
Confidence 555566666665332 2 2335699999999999999999999999999998 6899999999999999999999
Q ss_pred HHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 274 ALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 274 ~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+|++|++++|++.... ...... +....+++++++.|++.+
T Consensus 120 ~~~~Al~l~P~~~~a~-~~lg~~-l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 120 AFDSVLELDPTYNYAY-LNRGIA-LYYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHHHHHHhCCCCHHHH-HHHHHH-HHHCCCHHHHHHHHHHHH
Confidence 9999999999976532 222222 334456777777666655
No 21
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.83 E-value=2.4e-08 Score=90.64 Aligned_cols=99 Identities=11% Similarity=0.021 Sum_probs=85.3
Q ss_pred HHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHH-HHcCC--HHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 019871 185 RAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQL-YRTGK--YEVAREKFESVLGSKPTPEESSVASYNV 258 (334)
Q Consensus 185 ~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al-~~~g~--yeeAl~~fekALeldP~~~e~~~a~yNl 258 (334)
..|...|.++... .+.+...|.+++++.|++...+ ++|.++ +..|+ +++|+..++++++++|++ ..+++++
T Consensus 74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~---~~al~~L 150 (198)
T PRK10370 74 EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE---VTALMLL 150 (198)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC---hhHHHHH
Confidence 4566666665444 4667899999999999987776 999986 68788 599999999999999998 6799999
Q ss_pred HHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 259 ACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 259 A~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
|.++..+|++++|+.+++++++++|.+.
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999999853
No 22
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.83 E-value=1.1e-07 Score=88.31 Aligned_cols=139 Identities=18% Similarity=0.135 Sum_probs=106.1
Q ss_pred hHHHHHHHhhhhHHHHhhcccchhhh-hchhcHHH--HHHHhhchhhhhhhHH--HHHHHHHHHHHhhccCHHHHH-HHH
Q 019871 149 RTMYTIRQRVGPLLMKMQKRYGKMEQ-TGELSEKE--IIRAERNSGVISNRVR--EIQMQNYMKKKEQKERREQDL-REG 222 (334)
Q Consensus 149 ~v~sai~~R~G~V~lkLek~~~aie~-~~~l~ek~--~~~a~~n~g~~~~~l~--e~q~~~y~~~iel~~~~~~~~-nlG 222 (334)
.+...++...|--|+.-++...+-.- .+++ +++ ...+|.....++..+. +.+-+.|.+++.++|+..+.+ |-|
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL-~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKAL-EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 34455666666667764444333221 1111 111 1345667777776664 556789999999999987776 999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHH
Q 019871 223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRV 289 (334)
Q Consensus 223 ~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i 289 (334)
.-++..|+|++|...|++|+. +|.+++.+.+|-|+|.|-.+.|+++.|.++|+++|+++|++...+
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHH
Confidence 999999999999999999998 698887789999999999999999999999999999999876533
No 23
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4e-08 Score=99.81 Aligned_cols=116 Identities=13% Similarity=0.209 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871 195 NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 195 ~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
.+-...++..|.++|..+|+++..| |++.+|.++|.|.+|++.++++|+++|++ ..+|...|+|+..+.+|+.|++
T Consensus 371 ~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~---~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF---IKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667889999999999999999 99999999999999999999999999998 7899999999999999999999
Q ss_pred HHHHHHHcCCCCH-----------------------HHHhcChhhHHHhcChHHHHHHHHHHH
Q 019871 274 ALEDALLAGYEDF-----------------------KRVRTDPDLENLRASEEFDVLLKRFDE 313 (334)
Q Consensus 274 ~lekAIelgp~~~-----------------------~~i~~Dpdl~~Lr~dp~F~~lL~~~~e 313 (334)
.|+++++++|++. ...+.||+...|.+||-.+.++.++++
T Consensus 448 ay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~~dpev~~il~d~~m~~~l~q~q~ 510 (539)
T KOG0548|consen 448 AYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAMADPEVQAILQDPAMRQILEQMQE 510 (539)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhccCHHHHHHHcCHHHHHHHHHHHh
Confidence 9999999999543 235678999999999988888877654
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.78 E-value=2.4e-07 Score=80.63 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=99.1
Q ss_pred HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHc
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQD-LREGLQLYRT 228 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~ 228 (334)
+....|.++...+++..+++......... ....+...+.+.... .+.+...|.+.++..|+.... +++|..++..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 44567778888777777776432111110 112223333333222 345567777788877776554 4889999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHH
Q 019871 229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLL 308 (334)
Q Consensus 229 g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL 308 (334)
|+|++|+..|++++...+.. .....++++|.+|...|++++|+..|+++++.+|.+......-- ..+....++.+++
T Consensus 113 g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la--~~~~~~~~~~~A~ 189 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYP-QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELA--ELYYLRGQYKDAR 189 (234)
T ss_pred ccHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHH--HHHHHcCCHHHHH
Confidence 99999999999998754321 12568888999999999999999999999998887655322111 1122234555555
Q ss_pred HHHHHh
Q 019871 309 KRFDES 314 (334)
Q Consensus 309 ~~~~e~ 314 (334)
..+++.
T Consensus 190 ~~~~~~ 195 (234)
T TIGR02521 190 AYLERY 195 (234)
T ss_pred HHHHHH
Confidence 555443
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=1.4e-08 Score=105.07 Aligned_cols=124 Identities=13% Similarity=0.107 Sum_probs=91.5
Q ss_pred hhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Q 019871 187 ERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (334)
Q Consensus 187 ~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~ 263 (334)
|...|+...-. .+.++.++.++++++|+++-++ -+|-.+....+||.|..+|++||..+|.+ ..|||.+|.+|.
T Consensus 424 Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh---YnAwYGlG~vy~ 500 (638)
T KOG1126|consen 424 WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH---YNAWYGLGTVYL 500 (638)
T ss_pred HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh---hHHHHhhhhhee
Confidence 55555544333 3556788888888888887777 77888888888888888888888888887 789999999999
Q ss_pred HCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 264 KLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 264 ~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
++++++.|.-+|++|++++|.+...+-..-. .+...++.+++|.-|++++
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~--~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGR--IQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred ccchhhHHHHHHHhhhcCCccchhHHhhhhH--HHHHhhhhhHHHHHHHHHH
Confidence 9999999999999999999987654333221 1222234444444444444
No 26
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.78 E-value=2.9e-08 Score=74.41 Aligned_cols=63 Identities=25% Similarity=0.249 Sum_probs=58.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 222 G~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
..++.+.++|++|++++++++.++|++ +..|+.+|.||..+|++++|+.+|+++++.+|++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD---PELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc---chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 467899999999999999999999998 579999999999999999999999999999997544
No 27
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.77 E-value=5.1e-08 Score=85.94 Aligned_cols=83 Identities=13% Similarity=0.008 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.+..-|.-...++|.....+ ++|.++-.+|+|++||.+|.+|+.++|++ +.+++|.|.||.++|+.+.|.+.|+
T Consensus 51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd---p~~~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA---PQAPWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445666777777888877665 99999999999999999999999999998 5799999999999999999999999
Q ss_pred HHHHcCC
Q 019871 277 DALLAGY 283 (334)
Q Consensus 277 kAIelgp 283 (334)
.||..--
T Consensus 128 ~Ai~~~~ 134 (157)
T PRK15363 128 AVVRICG 134 (157)
T ss_pred HHHHHhc
Confidence 9998853
No 28
>PLN02789 farnesyltranstransferase
Probab=98.74 E-value=2.8e-07 Score=89.89 Aligned_cols=123 Identities=10% Similarity=-0.015 Sum_probs=91.1
Q ss_pred HHHHhhcccchhhhhc---hhcHHHHHHHhhchhhhhhhHH---HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCH--
Q 019871 161 LLMKMQKRYGKMEQTG---ELSEKEIIRAERNSGVISNRVR---EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKY-- 231 (334)
Q Consensus 161 V~lkLek~~~aie~~~---~l~ek~~~~a~~n~g~~~~~l~---e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~y-- 231 (334)
++...++...+++... .++.+. ..+|...+.+...+. +.++..+.+.++.+|+....+ ++|.++.++|++
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~-ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGN-YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchh-HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence 4556666666666321 222221 345666776666553 446677778888888886665 788888888874
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 232 eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
++++..++++|+++|++ ..+|++++.++..+|++++|+++++++|+.+|.|..
T Consensus 125 ~~el~~~~kal~~dpkN---y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 125 NKELEFTRKILSLDAKN---YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence 78889999999999988 679999999999999999999999999999988765
No 29
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.73 E-value=9.2e-08 Score=94.25 Aligned_cols=94 Identities=10% Similarity=0.069 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE 296 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~ 296 (334)
+++..|..++..|+|++|+.+|++||+++|++ +.+|+++|.||..+|++++|+.+|++||+++|.+...... ...
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~-lg~- 78 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR-KGT- 78 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH-HHH-
Confidence 45688999999999999999999999999998 6799999999999999999999999999999997763322 122
Q ss_pred HHhcChHHHHHHHHHHHhh
Q 019871 297 NLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 297 ~Lr~dp~F~~lL~~~~e~~ 315 (334)
.+....+|.+++..|++.+
T Consensus 79 ~~~~lg~~~eA~~~~~~al 97 (356)
T PLN03088 79 ACMKLEEYQTAKAALEKGA 97 (356)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 2334568888888888877
No 30
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.71 E-value=9.3e-08 Score=84.27 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR 288 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~ 288 (334)
..+..|..+++.|+|++|...|+-...+||.+ ...|||+|.|+..+|++++||..|.+|+.++|+++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS---FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 35699999999999999999999999999999 6899999999999999999999999999999998763
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.70 E-value=2.1e-07 Score=102.64 Aligned_cols=116 Identities=8% Similarity=-0.006 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871 196 RVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL 275 (334)
Q Consensus 196 ~l~e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l 275 (334)
+..+.++..|.++++++|+....+++|.++.++|++++|+..|+++++++|++ +.+++++|.++..+|++++|+..|
T Consensus 590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~---~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN---SNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34566788999999999985555699999999999999999999999999999 679999999999999999999999
Q ss_pred HHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 276 EDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 276 ekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
++|++++|++.... ..-... +....++.+++..|++.+.
T Consensus 667 ~~AL~l~P~~~~a~-~nLA~a-l~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 667 ERAHKGLPDDPALI-RQLAYV-NQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHhCCCCHHHH-HHHHHH-HHHCCCHHHHHHHHHHHHh
Confidence 99999999987632 222222 3445667777777777763
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=98.69 E-value=6.9e-07 Score=92.63 Aligned_cols=112 Identities=9% Similarity=-0.062 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhhccCHHHHH-HHHHHHHH---------cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh
Q 019871 199 EIQMQNYMKKKEQKERREQDL-REGLQLYR---------TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~---------~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~ 268 (334)
+.++..|.++++++|+....+ .+|.++.. .+++++|+..+++|++++|++ +.+|..+|.++..+|++
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~---~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN---PQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCH
Confidence 567788999999999987765 77776653 345899999999999999999 67999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 269 KAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 269 eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
++|+..|++|++++|++...... -.. .+....++++++..|++.+
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~-lg~-~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYY-YGW-NLFMAGQLEEALQTINECL 399 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH-HHH-HHHHCCCHHHHHHHHHHHH
Confidence 99999999999999998763211 111 1222345555555555543
No 33
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.69 E-value=1.7e-07 Score=99.19 Aligned_cols=110 Identities=14% Similarity=0.044 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871 201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI 279 (334)
++..|.+++++.|+....+ ++|.++.+.|++++|+..|+++++++|++ +.+++++|.+|..+|++++|+..|++++
T Consensus 269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~---~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 269 AAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL---PYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5678888889999876665 99999999999999999999999999998 5789999999999999999999999999
Q ss_pred HcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 280 LAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 280 elgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+.+|++..+...- -..+....+++++++.|++.+
T Consensus 346 ~~~P~~~~~~~~~--a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 346 REKGVTSKWNRYA--AAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HhCccchHHHHHH--HHHHHHCCCHHHHHHHHHHHH
Confidence 9999865422111 112444566777776666654
No 34
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.69 E-value=2.8e-07 Score=73.77 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA 274 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~ 274 (334)
+.++..|.+.++..|+. ...+.+|.++++.|+|++|+..|++++..+|++.....+++++|.+|..+|++++|+..
T Consensus 19 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 98 (119)
T TIGR02795 19 ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKAT 98 (119)
T ss_pred HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHH
Confidence 34455666666666653 34568999999999999999999999999998644457899999999999999999999
Q ss_pred HHHHHHcCCCCHH
Q 019871 275 LEDALLAGYEDFK 287 (334)
Q Consensus 275 lekAIelgp~~~~ 287 (334)
++++++..|++..
T Consensus 99 ~~~~~~~~p~~~~ 111 (119)
T TIGR02795 99 LQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHCcCChh
Confidence 9999999998643
No 35
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.1e-07 Score=94.47 Aligned_cols=160 Identities=13% Similarity=0.167 Sum_probs=118.9
Q ss_pred hhhHHHHhhcccchhhhhc---hhcHHHH-HHHhhchhhhhhhHHHHHHHHHHHHHhhccCHHHH-------------HH
Q 019871 158 VGPLLMKMQKRYGKMEQTG---ELSEKEI-IRAERNSGVISNRVREIQMQNYMKKKEQKERREQD-------------LR 220 (334)
Q Consensus 158 ~G~V~lkLek~~~aie~~~---~l~ek~~-~~a~~n~g~~~~~l~e~q~~~y~~~iel~~~~~~~-------------~n 220 (334)
...++..+.++.+++.-.. .+.+... ..--|+...++..-.+.+...|++++.+.|..... -.
T Consensus 175 ka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 175 KAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence 4556677777777765221 2222211 11244566666666788889999999998875442 28
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHh
Q 019871 221 EGLQLYRTGKYEVAREKFESVLGSKPTPEE-SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLR 299 (334)
Q Consensus 221 lG~al~~~g~yeeAl~~fekALeldP~~~e-~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr 299 (334)
.|+-+|+.|+|..|.++|..||.+||++-. .+..|+|+|.++..+|+..+||.+|+.|+++++.+.+.++.-.. .-.
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~--c~l 332 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN--CHL 332 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH--HHH
Confidence 999999999999999999999999999742 35789999999999999999999999999999998875443322 122
Q ss_pred cChHHHHHHHHHHHhhhchh
Q 019871 300 ASEEFDVLLKRFDESFINEN 319 (334)
Q Consensus 300 ~dp~F~~lL~~~~e~~~~~~ 319 (334)
..++|..+++.|++...++.
T Consensus 333 ~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 34689999998888775543
No 36
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=3.3e-07 Score=97.69 Aligned_cols=125 Identities=7% Similarity=-0.046 Sum_probs=96.9
Q ss_pred HhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Q 019871 186 AERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (334)
Q Consensus 186 a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay 262 (334)
+.++.+.+...+ .+.+..-+...+++.|+...++ +++.++.+++++++|+..+++++..+|++ +.+++++|.|+
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~---~~~~~~~a~~l 164 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS---AREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC---HHHHHHHHHHH
Confidence 344555554433 3666778888999999988776 99999999999999999999999999998 68999999999
Q ss_pred HHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 263 SKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 263 ~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
.++|++++|+..|++++..+|++.... ..-. ..|+..++-.++...|++.+
T Consensus 165 ~~~g~~~~A~~~y~~~~~~~p~~~~~~-~~~a-~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 165 DEIGQSEQADACFERLSRQHPEFENGY-VGWA-QSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHhcchHHHHHHHHHHHhcCCCcHHHH-HHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999888765522 2111 23555566666666666654
No 37
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.3e-06 Score=86.77 Aligned_cols=148 Identities=17% Similarity=0.128 Sum_probs=100.7
Q ss_pred ccccCcEeeeeccc--cc---cccccccchhhHHHHHH-HhhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhhhh
Q 019871 123 MFQVGDKVLATSAV--FG---TEIWPAAEYGRTMYTIR-QRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNR 196 (334)
Q Consensus 123 ~i~~gD~v~~~sa~--fg---~~~w~~~~~~~v~sai~-~R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~~ 196 (334)
.|-++-+|.+.--+ |. ++-|.-..-.++..|.+ ...|+.+.+.+++..|+..+.. ..+ .+. ++.. ..
T Consensus 173 ~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yer-av~-~l~-~~~~----~~ 245 (397)
T KOG0543|consen 173 LIPPNATLLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYER-AVS-FLE-YRRS----FD 245 (397)
T ss_pred CCCCCceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHH-HHH-Hhh-cccc----CC
Confidence 58888888883222 33 34443222234444444 4489999998888877764320 000 010 0001 11
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 197 VREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 197 l~e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
..+.+..- ...-.-.+|++.++.++++|.+|+..++++|+++|+| ..++|.+|-||..+|+++.|+.+|+
T Consensus 246 ~ee~~~~~-------~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N---~KALyRrG~A~l~~~e~~~A~~df~ 315 (397)
T KOG0543|consen 246 EEEQKKAE-------ALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN---VKALYRRGQALLALGEYDLARDDFQ 315 (397)
T ss_pred HHHHHHHH-------HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhhccHHHHHHHHH
Confidence 12222111 1122345699999999999999999999999999999 6899999999999999999999999
Q ss_pred HHHHcCCCCHH
Q 019871 277 DALLAGYEDFK 287 (334)
Q Consensus 277 kAIelgp~~~~ 287 (334)
+|+++.|+|..
T Consensus 316 ka~k~~P~Nka 326 (397)
T KOG0543|consen 316 KALKLEPSNKA 326 (397)
T ss_pred HHHHhCCCcHH
Confidence 99999999843
No 38
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.65 E-value=4.6e-07 Score=79.08 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.+++|..+...|+|++|+..|++++.+.|+....+.+|+|+|.+|..+|++++|+..|++|+.+.|.+..
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ 107 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 4599999999999999999999999998765333569999999999999999999999999999998665
No 39
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.65 E-value=3.4e-07 Score=80.46 Aligned_cols=70 Identities=23% Similarity=0.327 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.+++|..+...|+|++|+.+|++++++.|+.++...+|+++|.+|..+|++++|+.+|++|++..|.+..
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 3599999999999999999999999988875433578999999999999999999999999999998665
No 40
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.64 E-value=7.5e-07 Score=65.10 Aligned_cols=66 Identities=32% Similarity=0.427 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
.+++|..++..|++++|+..|+++++..|.+ ..+++++|.+|...|++++|+.+|+++++..|.+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN---ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 3567778888888888888888888888776 46788888888888888888888888888877754
No 41
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.63 E-value=5.6e-08 Score=71.88 Aligned_cols=59 Identities=29% Similarity=0.360 Sum_probs=54.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 225 l~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
+++.|+|++|+..|++++..+|++ ..+++.+|.||.+.|++++|...|++++..+|++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN---PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 468999999999999999999998 68999999999999999999999999999999853
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.1e-07 Score=96.15 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRV 289 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i 289 (334)
.-++|+-+|+.|+|++||++|++||++.|+- +.-|.|+|.||..+|++++-++++.+|++++|++.+.+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e---piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl 186 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDE---PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKAL 186 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHH
Confidence 4499999999999999999999999999996 57899999999999999999999999999999987733
No 43
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.63 E-value=1.1e-07 Score=73.92 Aligned_cols=76 Identities=28% Similarity=0.338 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKER---REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL 275 (334)
Q Consensus 199 e~q~~~y~~~iel~~~---~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l 275 (334)
+.++.-|.+.++..|. +...+.+|.++++.|+|++|+..+++ ++.+|.+ ...++-+|.||.++|++++|++.|
T Consensus 6 ~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~---~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 6 ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN---PDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH---HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC---HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3455666677777773 23445899999999999999999999 8888876 578888999999999999999999
Q ss_pred HHH
Q 019871 276 EDA 278 (334)
Q Consensus 276 ekA 278 (334)
++|
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 986
No 44
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=2.1e-07 Score=85.25 Aligned_cols=91 Identities=19% Similarity=0.139 Sum_probs=71.9
Q ss_pred hhhhHHHHHHHHHHHHHhhccCHHH-----HH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC
Q 019871 193 ISNRVREIQMQNYMKKKEQKERREQ-----DL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN 266 (334)
Q Consensus 193 ~~~~l~e~q~~~y~~~iel~~~~~~-----~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG 266 (334)
.-.+..+.+...|..++++-|.... +| |+|.++.++++++.||..+.+||+++|.+ -.|+-.+|-+|.++.
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty---~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY---EKALERRAEAYEKME 182 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh---HHHHHHHHHHHHhhh
Confidence 3455667777888888887765322 23 88888888888888888888888888887 467888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCH
Q 019871 267 QVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 267 ~~eeAl~~lekAIelgp~~~ 286 (334)
++++|+++|++.++++|...
T Consensus 183 k~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hHHHHHHHHHHHHHhCcchH
Confidence 88888888888888888743
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=7.2e-07 Score=89.81 Aligned_cols=115 Identities=16% Similarity=0.104 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
|-++.-+..++.++|+-..++ -+|-.+.++++-..|+.+|++|++++|.+ ..+||.+|-+|..++.+.-|+-+|++
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D---yRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD---YRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh---HHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 556677778899999988877 88999999999999999999999999998 68999999999999999999999999
Q ss_pred HHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhhchhHHHHHHHhhccc
Q 019871 278 ALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENAINAIKSLFGLL 331 (334)
Q Consensus 278 AIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~~~ai~~~k~~~~~~ 331 (334)
|+++-|+|.. -|+.+-++|.+.-..+.||+-+|...-+|
T Consensus 424 A~~~kPnDsR---------------lw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 424 ALELKPNDSR---------------LWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHhcCCCchH---------------HHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999999654 24555567777777777777777665544
No 46
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.60 E-value=6.8e-07 Score=94.69 Aligned_cols=127 Identities=13% Similarity=0.066 Sum_probs=95.2
Q ss_pred HhhhhHHHHhhcccch----hhhhc---hhcHHHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHH
Q 019871 156 QRVGPLLMKMQKRYGK----MEQTG---ELSEKEIIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQL 225 (334)
Q Consensus 156 ~R~G~V~lkLek~~~a----ie~~~---~l~ek~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al 225 (334)
...|.++..+++..++ ++... ++... ...++.+.|.+.... .+.++..+.+.+++.|+..... ++|.++
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3467777777777653 33211 11111 122344445444333 4566788889999999977654 999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 226 ~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
.+.|+|++|+..|+++++.+|++ ...++.+|.++..+|++++|+..|+++++..|++.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~---~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVT---SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999999999997 45677789999999999999999999999999965
No 47
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.57 E-value=7.1e-07 Score=71.44 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
..+.+|..+++.|+|++|+..|++++..+|++.....+++++|.+|...|++++|+..|++++...|..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 457899999999999999999999999999874335789999999999999999999999999998874
No 48
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.56 E-value=1.7e-07 Score=71.29 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSK----PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeld----P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
..++|.+++++|+|++|+..|++++++. +++++.+.+++|+|.||..+|++++|++++++|+++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3499999999999999999999999662 222233688999999999999999999999999986
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.55 E-value=1.4e-06 Score=75.84 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.+...+.+.++..|..... ..+|..+...|++++|+..|+++++.+|++ ..+++++|.+|...|++++|+..|+
T Consensus 47 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~ 123 (234)
T TIGR02521 47 LEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN---GDVLNNYGTFLCQQGKYEQAMQQFE 123 (234)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 445666777778888876555 489999999999999999999999999998 5799999999999999999999999
Q ss_pred HHHHcC
Q 019871 277 DALLAG 282 (334)
Q Consensus 277 kAIelg 282 (334)
++++..
T Consensus 124 ~~~~~~ 129 (234)
T TIGR02521 124 QAIEDP 129 (234)
T ss_pred HHHhcc
Confidence 999864
No 50
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.54 E-value=8.7e-07 Score=64.74 Aligned_cols=82 Identities=29% Similarity=0.378 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 200 IQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 200 ~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
.+...+.+.++..|.... .+.+|.++...+++++|+..|++++...|.+ ..+++.+|.++...|++++|+..++++
T Consensus 18 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 18 EALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN---AKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344556666666676543 4599999999999999999999999999998 468999999999999999999999999
Q ss_pred HHcCCC
Q 019871 279 LLAGYE 284 (334)
Q Consensus 279 Ielgp~ 284 (334)
++.+|.
T Consensus 95 ~~~~~~ 100 (100)
T cd00189 95 LELDPN 100 (100)
T ss_pred HccCCC
Confidence 998873
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.1e-06 Score=86.47 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
+.++.+|..+++++|.|..+| -+|.+|.-++...=|+-.|++|+++.|++ +..|--+|.||.++++.++|+++|.+
T Consensus 381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD---sRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND---SRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 556799999999999997765 99999999999999999999999999999 68999999999999999999999999
Q ss_pred HHHcCCCCHH
Q 019871 278 ALLAGYEDFK 287 (334)
Q Consensus 278 AIelgp~~~~ 287 (334)
|+..+-.+-.
T Consensus 458 ai~~~dte~~ 467 (559)
T KOG1155|consen 458 AILLGDTEGS 467 (559)
T ss_pred HHhccccchH
Confidence 9999876433
No 52
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.52 E-value=1.3e-06 Score=76.68 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=74.4
Q ss_pred hhchhhhhh--hHHHHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 019871 187 ERNSGVISN--RVREIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC 260 (334)
Q Consensus 187 ~~n~g~~~~--~l~e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ 260 (334)
+++.|.... +..+.++..|.+++++.++. ...+++|.+++++|+|++|+..|++++.++|++ ..+++++|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~ 114 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ---PSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHH
Confidence 344444442 33456667777777766543 334699999999999999999999999999998 679999999
Q ss_pred HHHHCCC--------------hHHHHHHHHHHHHcCCCCH
Q 019871 261 CYSKLNQ--------------VKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 261 ay~~lG~--------------~eeAl~~lekAIelgp~~~ 286 (334)
+|..+|+ +++|++.+++++.++|+++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 9999988 5667777777777777754
No 53
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=2.5e-07 Score=94.77 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
+.++.+|..++..+|++...| .+|-.+....+++|||..|++|+++.|.+ ..++||+|.+|+.+|.|.||+++|-.
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y---VR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY---VRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe---eeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 445789999999999999888 88999999999999999999999999998 57999999999999999999999999
Q ss_pred HHHcCCCC
Q 019871 278 ALLAGYED 285 (334)
Q Consensus 278 AIelgp~~ 285 (334)
||.+.+..
T Consensus 524 AL~mq~ks 531 (579)
T KOG1125|consen 524 ALSMQRKS 531 (579)
T ss_pred HHHhhhcc
Confidence 99997763
No 54
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=2.2e-06 Score=83.62 Aligned_cols=112 Identities=12% Similarity=-0.034 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh--HHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTG-KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV--KAGLSA 274 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g-~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~--eeAl~~ 274 (334)
+.++..+.+.|+++|.+..++ ++|.++..+| ++++|+..++++++.+|++ ..+|++++.++.++|+. ++++..
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn---yqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN---YQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc---hHHhHHHHHHHHHcCchhhHHHHHH
Confidence 456678889999999998776 9999999999 6899999999999999998 67999999999999974 789999
Q ss_pred HHHHHHcCCCCHH-HHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 275 LEDALLAGYEDFK-RVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 275 lekAIelgp~~~~-~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
++++|+.+|.++. |..+--. +.....|++.|+.+++.+.
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~---l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWV---LRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHH---HHHhhhHHHHHHHHHHHHH
Confidence 9999999999887 4333322 3444678999999888874
No 55
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.50 E-value=2.2e-06 Score=89.22 Aligned_cols=83 Identities=16% Similarity=0.104 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871 201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI 279 (334)
+...+.+.++..|++...+ .+|..+...|++++|+..|+++++.+|++ +.+++++|.+|..+|+ ++|+..+++++
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN---AVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 4444555555555544433 56666666666666666666666666655 4455666666666665 55666666666
Q ss_pred HcCCCCHH
Q 019871 280 LAGYEDFK 287 (334)
Q Consensus 280 elgp~~~~ 287 (334)
++.|++..
T Consensus 831 ~~~~~~~~ 838 (899)
T TIGR02917 831 KLAPNIPA 838 (899)
T ss_pred hhCCCCcH
Confidence 65555443
No 56
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=1.5e-06 Score=79.10 Aligned_cols=92 Identities=10% Similarity=0.113 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHHHhhccCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC-----
Q 019871 195 NRVREIQMQNYMKKKEQKERRE----QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL----- 265 (334)
Q Consensus 195 ~~l~e~q~~~y~~~iel~~~~~----~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l----- 265 (334)
.+..+.+...+.+.+...|... ..+.+|.++++.|++++|+..|+++++.+|+++....++|++|.||..+
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~ 125 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD 125 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence 3344566778888888888653 3469999999999999999999999999999865456899999999987
Q ss_pred ---CChHHHHHHHHHHHHcCCCCH
Q 019871 266 ---NQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 266 ---G~~eeAl~~lekAIelgp~~~ 286 (334)
|++++|++.|+++++.+|++.
T Consensus 126 ~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCh
Confidence 889999999999999999864
No 57
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=9.7e-07 Score=91.67 Aligned_cols=111 Identities=16% Similarity=0.151 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.++..|.+++..+|++..+| -+|.+++++++|+.|.-.|++|++++|.+ ......+|..|.++|+.++|+..|+
T Consensus 471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n---svi~~~~g~~~~~~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN---SVILCHIGRIQHQLKRKDKALQLYE 547 (638)
T ss_pred HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc---hhHHhhhhHHHHHhhhhhHHHHHHH
Confidence 4667899999999999987665 99999999999999999999999999998 6889999999999999999999999
Q ss_pred HHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHH
Q 019871 277 DALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDE 313 (334)
Q Consensus 277 kAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e 313 (334)
+|+-++|.+.-...+-. ..|....++++++..+++
T Consensus 548 ~A~~ld~kn~l~~~~~~--~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 548 KAIHLDPKNPLCKYHRA--SILFSLGRYVEALQELEE 582 (638)
T ss_pred HHHhcCCCCchhHHHHH--HHHHhhcchHHHHHHHHH
Confidence 99999998765222211 123333455555544443
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=9.3e-07 Score=89.52 Aligned_cols=114 Identities=16% Similarity=0.236 Sum_probs=91.4
Q ss_pred HHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871 202 MQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (334)
Q Consensus 202 ~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe 280 (334)
.+.+.++..++|++.+.| ++|..++-+++|++|+..|+++++++|++ ..+|.++||+..++++++++...|+.|++
T Consensus 380 ~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~---~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk 456 (606)
T KOG0547|consen 380 WKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN---AYAYIQLCCALYRQHKIAESMKTFEEAKK 456 (606)
T ss_pred HHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788899887765 99999999999999999999999999998 57999999999999999999999999999
Q ss_pred cCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhhchhH
Q 019871 281 AGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENA 320 (334)
Q Consensus 281 lgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~~~a 320 (334)
.=|+-.+-..-= -+-|-+...|..+++.|++.+.+++-
T Consensus 457 kFP~~~Evy~~f--AeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 457 KFPNCPEVYNLF--AEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred hCCCCchHHHHH--HHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 877644411000 01233345899999999999877765
No 59
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.46 E-value=5.2e-06 Score=80.48 Aligned_cols=130 Identities=15% Similarity=0.007 Sum_probs=87.5
Q ss_pred HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHH------HHHHHHH
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN--RVREIQMQNYMKKKEQKERRE------QDLREGL 223 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~------~~~nlG~ 223 (334)
+...+|.++...++...++.......+.. ...++...+.+.. +..+.++..+.+.++..|... ....+|.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 44566778888777777766322221100 1122222333322 223444555666665555431 1237888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 224 al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
.+++.|++++|+..|+++++.+|++ ..+++.+|.+|...|++++|++.++++++.+|.+.
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQC---VRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 8899999999999999999999887 56899999999999999999999999999888754
No 60
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.46 E-value=5.8e-06 Score=80.17 Aligned_cols=156 Identities=15% Similarity=0.055 Sum_probs=103.4
Q ss_pred HHhhhhHHHHhhcccchhhhhchhcHHH-------HHHHhhchhhhh--hhHHHHHHHHHHHHHhhccCHHHH-HHHHHH
Q 019871 155 RQRVGPLLMKMQKRYGKMEQTGELSEKE-------IIRAERNSGVIS--NRVREIQMQNYMKKKEQKERREQD-LREGLQ 224 (334)
Q Consensus 155 ~~R~G~V~lkLek~~~aie~~~~l~ek~-------~~~a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~-~nlG~a 224 (334)
....+.++.+.+++.++++....+.... ....+.+.+... .+..+.+...+.+.++..|..... +.+|..
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 223 (389)
T PRK11788 144 LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDL 223 (389)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHH
Confidence 3456667777777777776433222110 000111222221 233455667788888888876544 489999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHH
Q 019871 225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEF 304 (334)
Q Consensus 225 l~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F 304 (334)
+.+.|++++|++.|+++++.+|.+. ..++..++.+|..+|++++|+..++++++.+|+.... .. -...+....++
T Consensus 224 ~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~--la~~~~~~g~~ 298 (389)
T PRK11788 224 ALAQGDYAAAIEALERVEEQDPEYL--SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LA--LAQLLEEQEGP 298 (389)
T ss_pred HHHCCCHHHHHHHHHHHHHHChhhH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HH--HHHHHHHhCCH
Confidence 9999999999999999999988762 3578899999999999999999999999999875332 11 11123344566
Q ss_pred HHHHHHHHHhh
Q 019871 305 DVLLKRFDESF 315 (334)
Q Consensus 305 ~~lL~~~~e~~ 315 (334)
++++..+++.+
T Consensus 299 ~~A~~~l~~~l 309 (389)
T PRK11788 299 EAAQALLREQL 309 (389)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 61
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.45 E-value=3.3e-06 Score=94.66 Aligned_cols=126 Identities=10% Similarity=0.026 Sum_probs=93.8
Q ss_pred hhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHH---------------HH
Q 019871 159 GPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQ---------------DL 219 (334)
Q Consensus 159 G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~---------------~~ 219 (334)
|.+++..++..+++.......... ...++...|.+.... .+.++..|.+++++.|+... .+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 666677667776666432111111 123344455544333 45677888888888886421 13
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.+|.++.+.|++++|+..|+++++++|++ ..+++++|.+|..+|++++|+++|++|++++|++..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTD---SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 66889999999999999999999999998 579999999999999999999999999999999765
No 62
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.43 E-value=4e-06 Score=82.18 Aligned_cols=134 Identities=17% Similarity=0.182 Sum_probs=102.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh
Q 019871 190 SGVISNRVREIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268 (334)
Q Consensus 190 ~g~~~~~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~ 268 (334)
....-.+...-++..|..+++.+|+...+ |.+|.+|+.+|+-..|+..++++|++.|++ ..+-.++|.++.++|++
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF---~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF---MAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH---HHHHHHhchhhhhcccH
Confidence 33344444556789999999999998766 599999999999999999999999999999 67899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh---hchhHHHHHHHhhc
Q 019871 269 KAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF---INENAINAIKSLFG 329 (334)
Q Consensus 269 eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~---~~~~ai~~~k~~~~ 329 (334)
++|..+|+..|+.+|++-...-.-.-+..+. +...+.......+ .-.|||..|.+|+.
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~---e~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQ---EHWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHH---HHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 9999999999999997543221112222232 3344444443333 77889998888764
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.41 E-value=4e-06 Score=78.14 Aligned_cols=127 Identities=15% Similarity=0.124 Sum_probs=98.6
Q ss_pred HHHhhchhhhhhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Q 019871 184 IRAERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (334)
Q Consensus 184 ~~a~~n~g~~~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay 262 (334)
++...+.++...+-...+..+..++++.+|+....+ -++..+.+.|+.+-|-+.|++|+.++|++ ...++|-|.-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~---GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN---GDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc---cchhhhhhHHH
Confidence 455666777777777788899999999999987776 89999999999999999999999999999 56999999999
Q ss_pred HHCCChHHHHHHHHHHHHcCCCCHH--HHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 263 SKLNQVKAGLSALEDALLAGYEDFK--RVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 263 ~~lG~~eeAl~~lekAIelgp~~~~--~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
..+|++++|...|++|++. |.++. ....+..+-.++. ..|...-..|++++
T Consensus 114 C~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~-gq~~~A~~~l~raL 166 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKA-GQFDQAEEYLKRAL 166 (250)
T ss_pred HhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhc-CCchhHHHHHHHHH
Confidence 9999999999999999986 65443 2333444444432 34444444444443
No 64
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=3.9e-06 Score=77.13 Aligned_cols=96 Identities=22% Similarity=0.336 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhh
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE--ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDL 295 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~--e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl 295 (334)
+-..|+.+|..|+|++|...|.+||++-|.-. +++..|.|+|.|+.+++.++.||.+|.+||+++|.+-+.+.+...
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe- 176 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE- 176 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH-
Confidence 34679999999999999999999999999764 346889999999999999999999999999999997765543221
Q ss_pred HHHhcChHHHHHHHHHHHhh
Q 019871 296 ENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 296 ~~Lr~dp~F~~lL~~~~e~~ 315 (334)
..-+...|..+|+.|.+.+
T Consensus 177 -ayek~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 177 -AYEKMEKYEEALEDYKKIL 195 (271)
T ss_pred -HHHhhhhHHHHHHHHHHHH
Confidence 2334467888888887766
No 65
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.39 E-value=3e-06 Score=90.49 Aligned_cols=125 Identities=13% Similarity=-0.046 Sum_probs=95.9
Q ss_pred HhhhhHHHHhhcccchhhh---hchhcHHHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC
Q 019871 156 QRVGPLLMKMQKRYGKMEQ---TGELSEKEIIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTG 229 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~---~~~l~ek~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g 229 (334)
-..+.+.+.+.+++++... .+++..+. ..+..+.+.+.... .+.++..+.+.+...|+..... .+|.++.++|
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRFPDS-SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Confidence 3466666777777776652 22232222 22333444444433 4667788889999999887765 9999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 230 ~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
+|++|+.+|+++++.+|++ +.+|.++|.++...|+.++|...|++||+..-.
T Consensus 169 ~~~~A~~~y~~~~~~~p~~---~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 169 QSEQADACFERLSRQHPEF---ENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred chHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 9999999999999989987 579999999999999999999999999998544
No 66
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=8.3e-06 Score=74.18 Aligned_cols=86 Identities=17% Similarity=0.127 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhccCHHH----HHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCCcchHH------------
Q 019871 199 EIQMQNYMKKKEQKERREQ----DLREGLQLYRT--------GKYEVAREKFESVLGSKPTPEESSVA------------ 254 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~----~~nlG~al~~~--------g~yeeAl~~fekALeldP~~~e~~~a------------ 254 (334)
+.++..|.+.++..|+... .+.+|.++++. |++++|++.|+++++.+|++.....+
T Consensus 87 ~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~ 166 (235)
T TIGR03302 87 AEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLA 166 (235)
T ss_pred HHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHH
Confidence 4455666666666665432 34666666655 66677777777777766665321111
Q ss_pred --HHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 255 --SYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 255 --~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
++++|.+|...|++++|+..|+++++..|+
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 198 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPD 198 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Confidence 235666677777777777777777766554
No 67
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.38 E-value=3.4e-06 Score=80.25 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA 274 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~ 274 (334)
..++..|.+.+..+|+. ...+.+|.+++..|+|++|+..|+++++..|+++..+.+++.+|.+|..+|++++|+..
T Consensus 160 ~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~ 239 (263)
T PRK10803 160 DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAV 239 (263)
T ss_pred HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHH
Confidence 44455666667777765 34568888888888888888888888888888766677888888888888888888888
Q ss_pred HHHHHHcCCCCH
Q 019871 275 LEDALLAGYEDF 286 (334)
Q Consensus 275 lekAIelgp~~~ 286 (334)
|++.++..|+..
T Consensus 240 ~~~vi~~yP~s~ 251 (263)
T PRK10803 240 YQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHCcCCH
Confidence 888888887743
No 68
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.36 E-value=1.1e-05 Score=84.13 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
.+.++..|.+.++..|+....+++|.++.+.|++++|+..++++++.+|++ ..+++++|.+|..+|++++|+..|++
T Consensus 719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND---AVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 455677788888888888777799999999999999999999999999998 67999999999999999999999999
Q ss_pred HHHcCCCCHH
Q 019871 278 ALLAGYEDFK 287 (334)
Q Consensus 278 AIelgp~~~~ 287 (334)
+++.+|++..
T Consensus 796 ~~~~~p~~~~ 805 (899)
T TIGR02917 796 VVKKAPDNAV 805 (899)
T ss_pred HHHhCCCCHH
Confidence 9999998654
No 69
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.35 E-value=6.4e-06 Score=88.70 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
+.+...|.+.++++|+.... +.+|.++.+.|++++|+..++++++.+|++ .. |+.+|.++...|++++|+..|++
T Consensus 66 ~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~---~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 66 QNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDK---AN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 45678888999999987665 499999999999999999999999999998 56 99999999999999999999999
Q ss_pred HHHcCCCCHHH
Q 019871 278 ALLAGYEDFKR 288 (334)
Q Consensus 278 AIelgp~~~~~ 288 (334)
++++.|++...
T Consensus 142 al~~~P~~~~~ 152 (765)
T PRK10049 142 ALPRAPQTQQY 152 (765)
T ss_pred HHHhCCCCHHH
Confidence 99999998763
No 70
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.32 E-value=3.1e-06 Score=76.23 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC----------CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC
Q 019871 197 VREIQMQNYMKKKEQKERREQDL-REGLQLYRTG----------KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL 265 (334)
Q Consensus 197 l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g----------~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l 265 (334)
+-|.+.+.|......+|.+.+.+ +.|.+|.++. .+++|+..|++||.++|+. ..++|++|.+|+.+
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~---hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK---HDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHH
Confidence 34666778888888999998875 8898887764 4688999999999999998 67999999999987
Q ss_pred CC-----------hHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHH
Q 019871 266 NQ-----------VKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLL 308 (334)
Q Consensus 266 G~-----------~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL 308 (334)
+. |++|..+|++|.+.+|++-- +++ .|+.-++.|+.+.=|
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~-Y~k--sLe~~~kap~lh~e~ 133 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL-YRK--SLEMAAKAPELHMEI 133 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH-HHH--HHHHHHTHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH-HHH--HHHHHHhhHHHHHHH
Confidence 75 88899999999999998543 332 233334556654433
No 71
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.30 E-value=8.9e-06 Score=70.95 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH-------HCC
Q 019871 198 REIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS-------KLN 266 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~-------~lG 266 (334)
.+.+...|.+++.+.++. ...+++|.++...|++++|+..|++++.++|.+ ..+++++|.+|. .+|
T Consensus 51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~---~~~~~~la~i~~~~~~~~~~~g 127 (168)
T CHL00033 51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL---PQALNNMAVICHYRGEQAIEQG 127 (168)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHhhHHHHHcc
Confidence 455667777777665542 234699999999999999999999999999998 568999999999 888
Q ss_pred ChHHHHHHHH-------HHHHcCCCCH
Q 019871 267 QVKAGLSALE-------DALLAGYEDF 286 (334)
Q Consensus 267 ~~eeAl~~le-------kAIelgp~~~ 286 (334)
++++|+.+++ +++..+|.+.
T Consensus 128 ~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 128 DSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 8775555555 4555555543
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=4e-06 Score=86.13 Aligned_cols=108 Identities=18% Similarity=0.212 Sum_probs=87.6
Q ss_pred HHHHHHHhhcc--CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871 203 QNYMKKKEQKE--RREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (334)
Q Consensus 203 ~~y~~~iel~~--~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI 279 (334)
.-|.++....| .+++. .-+|..|+-.|+|+.|++||+.||..+|++ ...|+.+|..++.-.+.++||.+|.+|+
T Consensus 415 ~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd---~~lWNRLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 415 ELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND---YLLWNRLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred HHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch---HHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence 34566665555 34444 499999999999999999999999999999 6899999999999999999999999999
Q ss_pred HcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 280 LAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 280 elgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
++.|.+. +.+.+-++..+ ..+.|+++++-|=+.+
T Consensus 492 qLqP~yV-R~RyNlgIS~m-NlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 492 QLQPGYV-RVRYNLGISCM-NLGAYKEAVKHLLEAL 525 (579)
T ss_pred hcCCCee-eeehhhhhhhh-hhhhHHHHHHHHHHHH
Confidence 9999954 45666666544 4577888877665554
No 73
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.27 E-value=1.8e-06 Score=84.50 Aligned_cols=67 Identities=22% Similarity=0.244 Sum_probs=60.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.-.+|+.||++|+|+|||+||.+++.++|.+ +..|-|+|.+|.++.+|..|..+|+.||.++-.+.+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N---pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~K 166 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHN---PVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVK 166 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCC---ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence 3489999999999999999999999999988 578999999999999999999999999999876544
No 74
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.24 E-value=4.8e-06 Score=78.21 Aligned_cols=116 Identities=21% Similarity=0.212 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871 195 NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 195 ~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
.+..+.++..|.++++++|++.... .++..+...|+++++...+....+..|+++ ..|..+|.+|..+|++++|+.
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~---~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP---DLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC---CHCHHHHHHHHHHT-HHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH---HHHHHHHHHhccccccccccc
Confidence 3445678899999999999987765 899999999999998888888887777773 589999999999999999999
Q ss_pred HHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 274 ALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 274 ~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+|+++++.+|.|+.+...=.+ .+...++++++++-+.+.+
T Consensus 236 ~~~~~~~~~p~d~~~~~~~a~--~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 236 YLEKALKLNPDDPLWLLAYAD--ALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHSTT-HHHHHHHHH--HHT----------------
T ss_pred ccccccccccccccccccccc--ccccccccccccccccccc
Confidence 999999999998886554322 3555566666666554443
No 75
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.22 E-value=1.8e-05 Score=88.84 Aligned_cols=114 Identities=10% Similarity=0.058 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.++..|.+.+++.|++...+ ++|.++...|++++|++.|+++++.+|++ ..++..+|.++..+|++++|++.|+
T Consensus 619 ~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 619 YAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS---LNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC---hHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4666778888888888876654 88888888888888888888888888887 5678888888888888888888888
Q ss_pred HHHHcCCCCHH-----HHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 277 DALLAGYEDFK-----RVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 277 kAIelgp~~~~-----~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+++...|++.. .+..+.. ...+...+++++++.|++.+
T Consensus 696 ~al~~~~~~~~~~~~a~~~~~~a-~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 696 RLIPQAKSQPPSMESALVLRDAA-RFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHhhhCccCCcchhhHHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 88887765432 1111111 11234456667777666664
No 76
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=9.3e-06 Score=80.71 Aligned_cols=95 Identities=23% Similarity=0.397 Sum_probs=76.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----C--------cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP----E--------ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~----~--------e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
....|+.+|+.|+|..|+..|++|+..=+.. . ..-..|.|+|.||.+++++.+|+.+|+++|+++|.|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 3488999999999999999999998653321 1 123689999999999999999999999999999999
Q ss_pred HH-HHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 286 FK-RVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 286 ~~-~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
.+ ..++...+. ...+|+.+...|++.+
T Consensus 291 ~KALyRrG~A~l---~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 291 VKALYRRGQALL---ALGEYDLARDDFQKAL 318 (397)
T ss_pred hhHHHHHHHHHH---hhccHHHHHHHHHHHH
Confidence 98 445554433 3457888888887777
No 77
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=6.5e-06 Score=86.56 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=91.0
Q ss_pred hhhhHHHHHHHHHHHHHhhccCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHH
Q 019871 193 ISNRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAG 271 (334)
Q Consensus 193 ~~~~l~e~q~~~y~~~iel~~~~-~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeA 271 (334)
++..-.+..+......++++|-- ..+|.+|.+..+.++++.|.++|.+++.++|++ ..+|+|++++|.++++-.+|
T Consensus 496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~---~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN---AEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc---hhhhhhhhHHHHHHhhhHHH
Confidence 33344566677888888888864 556799999999999999999999999999999 57999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 272 LSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 272 l~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
...+.+|++.+..++... .+=++... +-..|.++++.|....
T Consensus 573 ~~~l~EAlKcn~~~w~iW-ENymlvsv-dvge~eda~~A~~rll 614 (777)
T KOG1128|consen 573 FRKLKEALKCNYQHWQIW-ENYMLVSV-DVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHhhcCCCCCeee-echhhhhh-hcccHHHHHHHHHHHH
Confidence 999999999997765522 22222222 2345666666555443
No 78
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.19 E-value=2e-06 Score=66.70 Aligned_cols=59 Identities=27% Similarity=0.410 Sum_probs=49.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 227 ~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
..|+|++|+..|+++++.+|.+. ....|+++|.||.++|++++|+..+++ ++.++.+..
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~ 59 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPD 59 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHH
Confidence 36899999999999999999642 257899999999999999999999999 777776433
No 79
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.14 E-value=3.5e-05 Score=83.06 Aligned_cols=111 Identities=5% Similarity=0.033 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
+.++..|.+.+...|..+. ...+|.++...|++++|+..|+++++++|++ +.+++++|.++...|++++|+..+++
T Consensus 32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN---DDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4445667777766676665 4599999999999999999999999999998 57899999999999999999999999
Q ss_pred HHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 278 ALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 278 AIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+++..|++.. ... -.. .+....++.+++..|++.+
T Consensus 109 ~l~~~P~~~~-~~~-la~-~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 109 LVSGAPDKAN-LLA-LAY-VYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHhCCCCHH-HHH-HHH-HHHHCCCHHHHHHHHHHHH
Confidence 9999999876 221 111 2333456666666666555
No 80
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.13 E-value=2.4e-05 Score=73.40 Aligned_cols=88 Identities=9% Similarity=0.085 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhccCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCC------
Q 019871 198 REIQMQNYMKKKEQKERREQD----LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ------ 267 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~----~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~------ 267 (334)
...+...|.+.+...|..... +.+|.++++.++|++|+..|++.+++.|+++....++|.+|.|+..++.
T Consensus 48 y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~ 127 (243)
T PRK10866 48 WKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGF 127 (243)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhc
Confidence 345566677777777765433 5888888888888888888888888888887777888888888655541
Q ss_pred ------------hHHHHHHHHHHHHcCCCC
Q 019871 268 ------------VKAGLSALEDALLAGYED 285 (334)
Q Consensus 268 ------------~eeAl~~lekAIelgp~~ 285 (334)
..+|+..|++-|+.-|+.
T Consensus 128 ~~~~~~~rD~~~~~~A~~~~~~li~~yP~S 157 (243)
T PRK10866 128 FGVDRSDRDPQHARAAFRDFSKLVRGYPNS 157 (243)
T ss_pred cCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence 256778888888887763
No 81
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.12 E-value=3.4e-05 Score=73.38 Aligned_cols=71 Identities=10% Similarity=0.057 Sum_probs=63.8
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 216 EQDLREGLQL-YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 216 ~~~~nlG~al-~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
...|+.+..+ ++.|+|++|+..|++.++..|++...+.++|++|.+|...|++++|+..|+++++..|+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 4567888887 6789999999999999999999865568999999999999999999999999999988743
No 82
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.08 E-value=4.5e-05 Score=83.24 Aligned_cols=190 Identities=8% Similarity=0.085 Sum_probs=117.9
Q ss_pred eccccccccccccchhh---HHHHHHHhhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhhhhHHHHH--------
Q 019871 133 TSAVFGTEIWPAAEYGR---TMYTIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQ-------- 201 (334)
Q Consensus 133 ~sa~fg~~~w~~~~~~~---v~sai~~R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~~l~e~q-------- 201 (334)
...+|..|.|.-++.+. --.-+..++..++...+++..+++.+.+..+. .+..-...+..+....+
T Consensus 9 ~~~~~~ee~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~ 85 (906)
T PRK14720 9 LTSLLNEEKWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSN 85 (906)
T ss_pred HHHHhhhhhhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhh
Confidence 34569999998555552 22235566666777777777777643211111 11111112222221111
Q ss_pred ----------------HHHHHHHHhhccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Q 019871 202 ----------------MQNYMKKKEQKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (334)
Q Consensus 202 ----------------~~~y~~~iel~~~-~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~ 264 (334)
...|.+.+...+. ....+.+|.+|-++|++++|...|+++|+++|++ +.+..|+|..|+.
T Consensus 86 lv~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n---~~aLNn~AY~~ae 162 (906)
T PRK14720 86 LLNLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN---PEIVKKLATSYEE 162 (906)
T ss_pred hhhhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc---HHHHHHHHHHHHH
Confidence 1222222222222 2445699999999999999999999999999999 6899999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCC-----HH-----HHhcChh---h-----HHHhcCh-------HHHHHHHHHHHhhhchh
Q 019871 265 LNQVKAGLSALEDALLAGYED-----FK-----RVRTDPD---L-----ENLRASE-------EFDVLLKRFDESFINEN 319 (334)
Q Consensus 265 lG~~eeAl~~lekAIelgp~~-----~~-----~i~~Dpd---l-----~~Lr~dp-------~F~~lL~~~~e~~~~~~ 319 (334)
. +.++|++.+.+|++...+. .. .+..+|+ + ..+..+- -+..+.+.|.+.-.++.
T Consensus 163 ~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 163 E-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred h-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 9 9999999999998764311 11 1122332 1 0111111 23444467777778889
Q ss_pred HHHHHHHhhc
Q 019871 320 AINAIKSLFG 329 (334)
Q Consensus 320 ai~~~k~~~~ 329 (334)
+|..+|.++.
T Consensus 242 ~i~iLK~iL~ 251 (906)
T PRK14720 242 VIYILKKILE 251 (906)
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 83
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.07 E-value=5.6e-06 Score=53.46 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 253 VASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 253 ~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
.+|+++|.+|..+|++++|+.+|++||+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57888888888888888888888888888886
No 84
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.06 E-value=4.5e-05 Score=66.35 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
..+.++.|...++.|+|.+|++.|+.....-|..+....+...++.+|.+.+++++|+..+++-|+++|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4556677777777777777777777777777766555567777777777777777777777777777775
No 85
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.03 E-value=4.1e-06 Score=55.23 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871 237 KFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 237 ~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
+|++||+++|++ +.+|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n---~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN---AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC---HHHHHHHHHHHHHCcCHHhhcC
Confidence 489999999999 6899999999999999999973
No 86
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.03 E-value=1.4e-05 Score=69.12 Aligned_cols=60 Identities=23% Similarity=0.201 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
..|.++.+.|+.+.|++.|.++|.+-|+. +.+|+|+|-+|..+|+.++|++++++|+++.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~r---aSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPER---ASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccc---hHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 56777788888888888888888888877 5678888888888888888888888888774
No 87
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.01 E-value=0.00015 Score=68.05 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 214 ~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
.....+..|..+++.|+|++|+..|++++...|..+....+.+++|.+|.+++++++|+..+++.|+..|++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 4556779999999999999999999999999999865556789999999999999999999999999999754
No 88
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.00 E-value=9e-05 Score=62.63 Aligned_cols=81 Identities=21% Similarity=0.187 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhccCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERRE----QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA 274 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~----~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~ 274 (334)
+.++..|.++++...... ..+.+|..+..+|++++|+..+++++...|+++-......-.|.++..+|+.++|+.+
T Consensus 18 ~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~ 97 (120)
T PF12688_consen 18 EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEW 97 (120)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 444555555554332221 1235555555555555555555555555555221134444455555555555555555
Q ss_pred HHHHH
Q 019871 275 LEDAL 279 (334)
Q Consensus 275 lekAI 279 (334)
+-.++
T Consensus 98 ~l~~l 102 (120)
T PF12688_consen 98 LLEAL 102 (120)
T ss_pred HHHHH
Confidence 55554
No 89
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=8.8e-06 Score=76.33 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
..|+.++...+|..|+.+|.+||.++|.. +..|-|+|.||.++.+++.+..++.+|+++.|+..+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~---~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk 79 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTV---ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK 79 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCc---chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH
Confidence 44555555555555555555555555554 234555555555555555555555555555555333
No 90
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.99 E-value=6e-05 Score=71.16 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871 201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI 279 (334)
+.....++..+.|++.+.+ .+|.+|.+.|++++|-..|.+++++.|.. +.+..|+|..|...|+++.|...+.+|.
T Consensus 119 A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 119 AVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE---PSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred HHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC---chhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555554444 55555555555555555555555555555 3455555555555555555555555555
Q ss_pred HcCCC
Q 019871 280 LAGYE 284 (334)
Q Consensus 280 elgp~ 284 (334)
...+.
T Consensus 196 l~~~a 200 (257)
T COG5010 196 LSPAA 200 (257)
T ss_pred hCCCC
Confidence 44443
No 91
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.96 E-value=9.1e-05 Score=69.99 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHh
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLR 299 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr 299 (334)
-.|..+++.|+|.+|+..+.++..++|++ +.+|.-+|.+|.++|++++|-..|.+|+++.|.+...+-+--.+--|+
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTD---WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence 59999999999999999999999999999 679999999999999999999999999999998665443333333344
Q ss_pred cChHHHHHHHHHHH
Q 019871 300 ASEEFDVLLKRFDE 313 (334)
Q Consensus 300 ~dp~F~~lL~~~~e 313 (334)
. +++.+..-+.+
T Consensus 182 g--d~~~A~~lll~ 193 (257)
T COG5010 182 G--DLEDAETLLLP 193 (257)
T ss_pred C--CHHHHHHHHHH
Confidence 3 44444443333
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.95 E-value=3e-05 Score=76.15 Aligned_cols=93 Identities=20% Similarity=0.281 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-HHhcChhh
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-RVRTDPDL 295 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-~i~~Dpdl 295 (334)
..+.+|..++..|+|.+|+..|..|++.||++ ..++|.+|.+|..+|+-..|+.+|.+.|++-|+... ++.+.-
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~---Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~-- 114 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNN---YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV-- 114 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch--
Confidence 35699999999999999999999999999998 789999999999999999999999999999999555 444332
Q ss_pred HHHhcChHHHHHHHHHHHhh
Q 019871 296 ENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 296 ~~Lr~dp~F~~lL~~~~e~~ 315 (334)
.|.+.++++++...|+..+
T Consensus 115 -vllK~Gele~A~~DF~~vl 133 (504)
T KOG0624|consen 115 -VLLKQGELEQAEADFDQVL 133 (504)
T ss_pred -hhhhcccHHHHHHHHHHHH
Confidence 2445567777777776554
No 93
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00014 Score=62.07 Aligned_cols=60 Identities=25% Similarity=0.410 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
.+.+|..++..|+|++|+..|+++++..|+......+.+.+|.++..+|++++|+..|+.
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 358999999999999999999999998776543457899999999999999999999976
No 94
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=2e-05 Score=77.00 Aligned_cols=131 Identities=11% Similarity=0.144 Sum_probs=102.4
Q ss_pred hhhHHHHhhcccchhhhhchh-cHHHH-HH--HhhchhhhhhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHH
Q 019871 158 VGPLLMKMQKRYGKMEQTGEL-SEKEI-IR--AERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYE 232 (334)
Q Consensus 158 ~G~V~lkLek~~~aie~~~~l-~ek~~-~~--a~~n~g~~~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~ye 232 (334)
+.-|+..|+.+.++++.++.. ..+.+ ++ +-...++.+.+.-|+++.-|.+-++.-.+..+.| |+|++++-.++|+
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchh
Confidence 344555666667766644311 11111 11 2335677788888999999999988888887877 9999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH
Q 019871 233 VAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR 288 (334)
Q Consensus 233 eAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~ 288 (334)
-++.+|++|+..--+..+.++.|||++.+....|++.-|-.+|+-|+-.++++.+.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 99999999998766555568999999999999999999999999999999986553
No 95
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2.6e-05 Score=80.19 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
.|+|-++.++++|++||..|+++|.+.|.+ +.+|-.+|.+|..+|+++.|+++|.+||.+.|++
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~---~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALLLSPKD---ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 499999999999999999999999999999 6799999999999999999999999999999997
No 96
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.91 E-value=4.5e-05 Score=56.42 Aligned_cols=52 Identities=27% Similarity=0.359 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 019871 195 NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTG-KYEVAREKFESVLGSKP 246 (334)
Q Consensus 195 ~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g-~yeeAl~~fekALeldP 246 (334)
.+-.+.++..|.++++++|.....+ ++|.+++++| +|++|++.|+++++++|
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4445667889999999999987765 9999999999 79999999999999998
No 97
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.91 E-value=2.4e-05 Score=50.05 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 253 VASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 253 ~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
.+|+++|.+|..+|++++|+.+|++|++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888888888888888888888877764
No 98
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.89 E-value=0.00015 Score=65.80 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
+...+..|..+++.|+|.+|+..|++.+...|..+....+++.+|.+|.+.|++++|+..+++-|+..|..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 45678999999999999999999999999999987778999999999999999999999999999999974
No 99
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00016 Score=74.53 Aligned_cols=116 Identities=20% Similarity=0.278 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---------------------------
Q 019871 198 REIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPE--------------------------- 249 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~--------------------------- 249 (334)
.+++|.+|..+..+-|.-.. .+.+|..+.+++.++-|-..|.+|+.+.|.++
T Consensus 362 hdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 362 HDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 46677788877776665433 34666666666666666666666666666653
Q ss_pred --------c---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 250 --------E---SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 250 --------e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+ -...+.|+|-+|.+++++++||.++++||.+.|.+....-.-.-+-.+ .+.++.+++-|.|++
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l--lgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL--LGNLDKAIDHFHKAL 516 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH--hcChHHHHHHHHHHH
Confidence 0 013478999999999999999999999999999887744332222223 246788888888877
No 100
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=4.8e-05 Score=76.01 Aligned_cols=88 Identities=15% Similarity=0.100 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHHHHhhccCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh
Q 019871 194 SNRVREIQMQNYMKKKEQKERREQ-----DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268 (334)
Q Consensus 194 ~~~l~e~q~~~y~~~iel~~~~~~-----~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~ 268 (334)
..+-...+...|-++|.++|..-. .+|++.+..++|+..+||..++.|+++||.. ..++..+|.||..+++|
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy---ikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY---IKALLRRANCHLALEKW 337 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH---HHHHHHHHHHHHHHHHH
Confidence 344445567899999999987422 2499999999999999999999999999998 68999999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 019871 269 KAGLSALEDALLAGYE 284 (334)
Q Consensus 269 eeAl~~lekAIelgp~ 284 (334)
++|+++|++|++..-+
T Consensus 338 e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999999988654
No 101
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.87 E-value=0.00011 Score=63.89 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCC---------------hHHHHHHHHHHHHcC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ---------------VKAGLSALEDALLAG 282 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~---------------~eeAl~~lekAIelg 282 (334)
.+.+|.++|+.++|++|+..+++-|+++|+++....++|-+|.++..+.. ..+|+..|++.|..-
T Consensus 50 qL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 50 QLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 46999999999999999999999999999998778899999999999876 666666666666666
Q ss_pred CC
Q 019871 283 YE 284 (334)
Q Consensus 283 p~ 284 (334)
|+
T Consensus 130 P~ 131 (142)
T PF13512_consen 130 PN 131 (142)
T ss_pred cC
Confidence 65
No 102
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.83 E-value=0.00017 Score=67.29 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=86.4
Q ss_pred hchhhhh--hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Q 019871 188 RNSGVIS--NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (334)
Q Consensus 188 ~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~ 264 (334)
+-.|+.+ .+++..+..++.+++.+.|.-++.| .+|.-+...|+|+.|.+.|+..+++||.+. .++-|+|.++.-
T Consensus 69 fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~---Ya~lNRgi~~YY 145 (297)
T COG4785 69 FERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLNRGIALYY 145 (297)
T ss_pred HHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch---HHHhccceeeee
Confidence 3456665 4667888889999999999988888 789999999999999999999999999984 699999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCHH
Q 019871 265 LNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 265 lG~~eeAl~~lekAIelgp~~~~ 287 (334)
-|+++-|.+++.+--..+|.|+-
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChH
Confidence 99999999999999999998764
No 103
>PRK11906 transcriptional regulator; Provisional
Probab=97.83 E-value=0.00012 Score=74.19 Aligned_cols=83 Identities=13% Similarity=0.021 Sum_probs=74.6
Q ss_pred HHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871 202 MQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (334)
Q Consensus 202 ~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe 280 (334)
...-.+++++++.++.+. .+|.++.-.++++.|+..|++|+.++|++ +.+||..|......|+.++|++++++|++
T Consensus 324 ~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~---A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 324 LELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI---ASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 345566788899887775 99999999999999999999999999998 78999999999999999999999999999
Q ss_pred cCCCCHH
Q 019871 281 AGYEDFK 287 (334)
Q Consensus 281 lgp~~~~ 287 (334)
++|.-..
T Consensus 401 LsP~~~~ 407 (458)
T PRK11906 401 LEPRRRK 407 (458)
T ss_pred cCchhhH
Confidence 9997443
No 104
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00013 Score=71.21 Aligned_cols=93 Identities=22% Similarity=0.227 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-HHhcChhhHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPE-ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-RVRTDPDLEN 297 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~-e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-~i~~Dpdl~~ 297 (334)
..|+.+|+.++|.+|+.+|.++|+.+-.++ ..+..|.|+|.|...+|+|-.||.+|.+|+.++|.+.+ .++.-..
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc--- 162 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC--- 162 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH---
Confidence 779999999999999999999997754443 24688999999999999999999999999999999888 4555444
Q ss_pred HhcChHHHHHHHHHHHhh
Q 019871 298 LRASEEFDVLLKRFDESF 315 (334)
Q Consensus 298 Lr~dp~F~~lL~~~~e~~ 315 (334)
+-...+|..+++-+++.+
T Consensus 163 ~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 334457888887777766
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.80 E-value=0.00015 Score=69.62 Aligned_cols=62 Identities=21% Similarity=0.158 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
.+|.++...|++++|+..|+++++++|++ ..+++.+|.+|...|++++|+.+++++++..|.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 66777777777777777777777777776 456777777777777777777777777776653
No 106
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=97.80 E-value=1.1e-05 Score=62.32 Aligned_cols=41 Identities=32% Similarity=0.853 Sum_probs=38.0
Q ss_pred CCcceeEeecCCC---ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 93 QPYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~~~g---~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.|+|+.+..+.+. ++||..|.|+|.|+++| +++||.|+.+-
T Consensus 10 ~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~IN 53 (81)
T PF00595_consen 10 GPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEIN 53 (81)
T ss_dssp SBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEET
T ss_pred CCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeC
Confidence 5999999888775 99999999999999999 99999999984
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.78 E-value=0.00017 Score=69.16 Aligned_cols=86 Identities=10% Similarity=0.036 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHHHHCCChHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEE-SSVASYNVACCYSKLNQVKAGLSAL 275 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e-~~~a~yNlA~ay~~lG~~eeAl~~l 275 (334)
.+.+...+.+.+++.|++... ..+|.++++.|++++|+..++++++..|..+. ....|+.+|.++..+|++++|+..|
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 456678888999999998655 49999999999999999999999999875422 1346779999999999999999999
Q ss_pred HHHHHcCC
Q 019871 276 EDALLAGY 283 (334)
Q Consensus 276 ekAIelgp 283 (334)
++++...|
T Consensus 210 ~~~~~~~~ 217 (355)
T cd05804 210 DTHIAPSA 217 (355)
T ss_pred HHHhcccc
Confidence 99987776
No 108
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.77 E-value=9.6e-05 Score=74.13 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc---hHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEES---SVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~---~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
++|+.||-+|+|++||...+.=|++..++.++ ..++.|+|.||.-+|+++.|+++|++++.+
T Consensus 200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 89999999999999999999999887776432 378999999999999999999999987554
No 109
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.76 E-value=0.0006 Score=57.63 Aligned_cols=108 Identities=19% Similarity=0.082 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH--HHhcChh
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK--RVRTDPD 294 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~--~i~~Dpd 294 (334)
..|++|.++-.+|+.++|+..|+++++..+..+....++.++|.+|..+|++++|+..|++++...|++.- .+..--.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 45789999999999999999999999987766545679999999999999999999999999998776211 1111111
Q ss_pred hHHHhcChHHHHHHHHHHHhh-----hchhHHHHHH
Q 019871 295 LENLRASEEFDVLLKRFDESF-----INENAINAIK 325 (334)
Q Consensus 295 l~~Lr~dp~F~~lL~~~~e~~-----~~~~ai~~~k 325 (334)
+ .|....+.++.++-+-..+ .+..||.++.
T Consensus 83 l-~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 83 L-ALYNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred H-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2344455555554443333 4555665553
No 110
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.76 E-value=0.00062 Score=69.25 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=67.5
Q ss_pred hccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH
Q 019871 211 QKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR 288 (334)
Q Consensus 211 l~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~ 288 (334)
..|++.... ..|..+.+.+++++|++.+++++.++|.. +..++|+|.+|.+.|++++|+..+++.+..+|+|..+
T Consensus 335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~---~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~ 410 (484)
T COG4783 335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS---PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG 410 (484)
T ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchH
Confidence 446665555 88899999999999999999999999997 6899999999999999999999999999999998773
No 111
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.75 E-value=0.00027 Score=67.21 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA 274 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~ 274 (334)
..+.+.+.+-+..+|+. ...|.+|.++|.+|+|++|...|..++...|+.+-.+.+++.+|.|...+|+.++|...
T Consensus 158 ~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~at 237 (262)
T COG1729 158 AEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACAT 237 (262)
T ss_pred HHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHH
Confidence 34445555555566663 34568888888888888888888888888888877678888888888888888888888
Q ss_pred HHHHHHcCCCCHH
Q 019871 275 LEDALLAGYEDFK 287 (334)
Q Consensus 275 lekAIelgp~~~~ 287 (334)
|++.++-.|....
T Consensus 238 l~qv~k~YP~t~a 250 (262)
T COG1729 238 LQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHCCCCHH
Confidence 8888888887543
No 112
>PRK15331 chaperone protein SicA; Provisional
Probab=97.74 E-value=0.00018 Score=63.96 Aligned_cols=68 Identities=4% Similarity=-0.069 Sum_probs=55.1
Q ss_pred hhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871 210 EQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (334)
Q Consensus 210 el~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe 280 (334)
..++.+... +.+|.++..+++|++|+..|..|..++++++ ...|..|-||..+|+.+.|..+|+.|++
T Consensus 65 ~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 65 IYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY---RPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC---CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 344554443 4888888888999999999999998888874 5788889999999999999999988888
No 113
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.74 E-value=4.5e-05 Score=74.95 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=82.0
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCC
Q 019871 189 NSGVISNRVREIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (334)
Q Consensus 189 n~g~~~~~l~e~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~ 267 (334)
++.+...+-.+.++-+|.+.+...|..+. ..|++.+|+++++|..|...|+.|+.+|..+ ..+|..++.+-..+|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y---~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY---VKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH---HHHHHHHHHHHHHHhh
Confidence 33344445556677888888888885444 4599999999999999999999999999887 6899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCHH
Q 019871 268 VKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 268 ~eeAl~~lekAIelgp~~~~ 287 (334)
..||-++|+.+|++.|++.+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH
Confidence 99999999999999998665
No 114
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.72 E-value=0.00013 Score=53.51 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871 194 SNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTP 248 (334)
Q Consensus 194 ~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~ 248 (334)
..+-.+.++..|.+.++..|++...+ .+|.+++++|++++|+..|+++++++|++
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34445667788999999999887765 99999999999999999999999999986
No 115
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.72 E-value=0.00028 Score=73.23 Aligned_cols=65 Identities=11% Similarity=0.012 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR 288 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~ 288 (334)
-+|..+...|++++|...|++|++++|. ..+|+.+|.+|...|+.++|++.|++|+.++|.+..+
T Consensus 425 ala~~~~~~g~~~~A~~~l~rAl~L~ps----~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 425 ILAVQALVKGKTDEAYQAINKAIDLEMS----WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 6788888899999999999999999995 4799999999999999999999999999999997653
No 116
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.69 E-value=3.3e-05 Score=78.25 Aligned_cols=88 Identities=17% Similarity=0.097 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871 197 VREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL 275 (334)
Q Consensus 197 l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l 275 (334)
....++.-|.++|+++|+.+..+ +++.++.+.++|..|+..+.+||+++|.. ..+|+-+|.+++.++++.+|+.+|
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~---~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY---IKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh---hheeeeccHHHHhHHHHHHHHHHH
Confidence 34556778999999999887777 88899999999999999999999999997 579999999999999999999999
Q ss_pred HHHHHcCCCCHH
Q 019871 276 EDALLAGYEDFK 287 (334)
Q Consensus 276 ekAIelgp~~~~ 287 (334)
++...+.|++..
T Consensus 96 ~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 96 EKVKKLAPNDPD 107 (476)
T ss_pred HHhhhcCcCcHH
Confidence 999999998665
No 117
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.68 E-value=0.00024 Score=75.39 Aligned_cols=89 Identities=15% Similarity=0.114 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHH
Q 019871 195 NRVREIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVARE--KFESVLGSKPTPEESSVASYNVACCYSKLNQVKAG 271 (334)
Q Consensus 195 ~~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~--~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeA 271 (334)
.+..+.+++.|..++.++|.+... ..+|.++.+.|+-.-|.+ ....|+++||.+ +.+||++|+++.++|+.++|
T Consensus 697 ~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n---~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN---HEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccchHHH
Confidence 344577788999999999987555 489999999998888888 889999999998 56999999999999999999
Q ss_pred HHHHHHHHHcCCCCH
Q 019871 272 LSALEDALLAGYEDF 286 (334)
Q Consensus 272 l~~lekAIelgp~~~ 286 (334)
.++|.-|+++.+.++
T Consensus 774 aecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 774 AECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHhhccCCC
Confidence 999999999987754
No 118
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.68 E-value=6.5e-05 Score=48.39 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~ 248 (334)
..+++|.+++.+|+|++|+.+|++||+++|++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 45699999999999999999999999999974
No 119
>PRK15331 chaperone protein SicA; Provisional
Probab=97.67 E-value=0.00031 Score=62.54 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
..+..|..+|+.|+|++|...|.-....+|.+ +.-|..+|.|+-.++++++|+..|..|..++++|+.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n---~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~ 106 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN---PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR 106 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 34688999999999999999999999999998 578999999999999999999999999999887664
No 120
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.66 E-value=0.001 Score=71.73 Aligned_cols=96 Identities=15% Similarity=0.137 Sum_probs=82.5
Q ss_pred HHhhchhhhhhhHHHH--HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 019871 185 RAERNSGVISNRVREI--QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC 261 (334)
Q Consensus 185 ~a~~n~g~~~~~l~e~--q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~a 261 (334)
.||...|.++.....+ ..+....++-++|++.+.| .++....++|.+.+|.-||.+||..+|.+ ....|+++..
T Consensus 174 ~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n---~~~~~ers~L 250 (895)
T KOG2076|consen 174 IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN---WELIYERSSL 250 (895)
T ss_pred hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc---hHHHHHHHHH
Confidence 4677777777666433 3556666777899987665 99999999999999999999999999998 6789999999
Q ss_pred HHHCCChHHHHHHHHHHHHcCC
Q 019871 262 YSKLNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 262 y~~lG~~eeAl~~lekAIelgp 283 (334)
|-+.|+...|+..+.+.+.+.|
T Consensus 251 ~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 251 YQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHhChHHHHHHHHHHHHhhCC
Confidence 9999999999999999999998
No 121
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.63 E-value=0.00012 Score=46.71 Aligned_cols=32 Identities=34% Similarity=0.426 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~ 248 (334)
..+.+|.+++++|+|++|+++|+++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45699999999999999999999999999985
No 122
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.62 E-value=0.00058 Score=73.51 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 200 IQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 200 ~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
.++.-..+.|.++|....+| .+|.++.++|+.+.|+..+-.|.-++|.+ ...|.-+|-...++|++.+|.-+|.||
T Consensus 157 eA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d---~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 157 EAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD---YELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34455566777888887776 99999999999999999999999999999 579999999999999999999999999
Q ss_pred HHcCCCCHHHHhcC
Q 019871 279 LLAGYEDFKRVRTD 292 (334)
Q Consensus 279 Ielgp~~~~~i~~D 292 (334)
|.++|.+++.+..-
T Consensus 234 I~~~p~n~~~~~er 247 (895)
T KOG2076|consen 234 IQANPSNWELIYER 247 (895)
T ss_pred HhcCCcchHHHHHH
Confidence 99999998855543
No 123
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.61 E-value=0.0009 Score=60.68 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC--------
Q 019871 199 EIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN-------- 266 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG-------- 266 (334)
..++..+.+.+...|.. ...+.+|.++++.|+|++|+..|++.++..|+++....++|.+|.|+..+.
T Consensus 22 ~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~ 101 (203)
T PF13525_consen 22 EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDR 101 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhccc
Confidence 33445555555555552 334699999999999999999999999999999877789999999987654
Q ss_pred ---ChHHHHHHHHHHHHcCCCCH
Q 019871 267 ---QVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 267 ---~~eeAl~~lekAIelgp~~~ 286 (334)
...+|+..|+..|+.-|+..
T Consensus 102 D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 102 DQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp --HHHHHHHHHHHHHHHH-TTST
T ss_pred ChHHHHHHHHHHHHHHHHCcCch
Confidence 34589999999999999743
No 124
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.58 E-value=0.00016 Score=67.84 Aligned_cols=60 Identities=20% Similarity=0.157 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
..+|.+++.+|++++|+..|+++++.+|++ +..+.+.|-++...|+.++|+..++++++.
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d---~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLNPDD---PLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHT------------------
T ss_pred HHHHHHhccccccccccccccccccccccc---cccccccccccccccccccccccccccccc
Confidence 489999999999999999999999999998 689999999999999999999999998764
No 125
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.54 E-value=0.0002 Score=49.31 Aligned_cols=40 Identities=20% Similarity=0.097 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC 260 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ 260 (334)
.+.+|.++.++|++++|++.|+++++.+|++ +.+|+.+|.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~---~~a~~~La~ 43 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDD---PEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC---HHHHHHhhh
Confidence 3466777777777777777777777777776 456666653
No 126
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.54 E-value=0.00062 Score=68.48 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 200 IQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 200 ~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
.+++-..+.+...|++.+.+ ..+..+.+.++|+.|+.+.++++.+.|.+ -..|+.+|.||..+|++++|+..++-+
T Consensus 218 ~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~---f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 218 EAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSE---FETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 34566667777888887766 78888999999999999999999999998 579999999999999999999998865
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.00086 Score=63.63 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=79.4
Q ss_pred HHHHhhcccchhhhhchhcHHH----HHH-----HhhchhhhhhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC
Q 019871 161 LLMKMQKRYGKMEQTGELSEKE----IIR-----AERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGK 230 (334)
Q Consensus 161 V~lkLek~~~aie~~~~l~ek~----~~~-----a~~n~g~~~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~ 230 (334)
.+...+.+.++++++.++.+++ .++ .-..+|... .+++.-.+-++..+.|.++| .++..|+..|+
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l-----~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL-----EAIKELNEYLDKFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence 3445566777777655554432 111 111222222 22233333344557887776 99999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC---ChHHHHHHHHHHHHcCCCCH
Q 019871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN---QVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG---~~eeAl~~lekAIelgp~~~ 286 (334)
|+.|.-||++.+=+.|.+ +..+-.+|-++.-+| +++-|.++|.+|++++|.+.
T Consensus 170 f~kA~fClEE~ll~~P~n---~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 170 FEKAAFCLEELLLIQPFN---PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 999999999999999998 455556676665555 67889999999999999544
No 128
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0015 Score=62.92 Aligned_cols=107 Identities=8% Similarity=0.014 Sum_probs=70.4
Q ss_pred HHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC--C-ChHHHHHHHHHHH
Q 019871 204 NYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL--N-QVKAGLSALEDAL 279 (334)
Q Consensus 204 ~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l--G-~~eeAl~~lekAI 279 (334)
.-...+..+|++.+-| -+|-+++..|++..|+..|.+|+++.|+++ ..+-..|.++... + .-.++...|++|+
T Consensus 144 ~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~---~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 144 RLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP---EILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 3445566778775544 888888888888888888888888888884 3454444444332 2 2467788888888
Q ss_pred HcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 280 LAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 280 elgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
.++|.+.....- -.+. .....+|++++..+++.+
T Consensus 221 ~~D~~~iral~l-LA~~-afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 221 ALDPANIRALSL-LAFA-AFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred hcCCccHHHHHH-HHHH-HHHcccHHHHHHHHHHHH
Confidence 888887662211 1222 233567777777777666
No 129
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.52 E-value=0.00011 Score=74.47 Aligned_cols=92 Identities=17% Similarity=0.137 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-HHhcChhhH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-RVRTDPDLE 296 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-~i~~Dpdl~ 296 (334)
.-+.+..+++.+.|+.|+..|.+||+++|+. +..+-|+|.++.+.+.+..|+.++.+||+++|.+.+ .+++.-.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnc---a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a-- 81 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNC---AIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTA-- 81 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcc---eeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHH--
Confidence 3478899999999999999999999999998 467889999999999999999999999999999776 3344222
Q ss_pred HHhcChHHHHHHHHHHHhh
Q 019871 297 NLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 297 ~Lr~dp~F~~lL~~~~e~~ 315 (334)
.....+|.+++..|++-.
T Consensus 82 -~m~l~~~~~A~~~l~~~~ 99 (476)
T KOG0376|consen 82 -VMALGEFKKALLDLEKVK 99 (476)
T ss_pred -HHhHHHHHHHHHHHHHhh
Confidence 333457777777666544
No 130
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.52 E-value=0.0048 Score=64.13 Aligned_cols=112 Identities=5% Similarity=-0.054 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhccCHHHHH-HHHHHHHHc--------CCHHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHHHHCCC
Q 019871 199 EIQMQNYMKKKEQKERREQDL-REGLQLYRT--------GKYEVAREKFESVLGS--KPTPEESSVASYNVACCYSKLNQ 267 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~--------g~yeeAl~~fekALel--dP~~~e~~~a~yNlA~ay~~lG~ 267 (334)
..++..+.++++++|+.+.++ .++.++... .+.+.|.+..++++.+ +|.. +.+|.-+|..+...|+
T Consensus 359 ~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~---~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 359 NKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL---PRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC---hHHHHHHHHHHHhcCC
Confidence 456678889999999987776 555555432 2456777777787775 5555 5789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 268 VKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 268 ~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
+++|...|++|++++|....++..... +-..++++++++.|.+++.
T Consensus 436 ~~~A~~~l~rAl~L~ps~~a~~~lG~~---~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 436 TDEAYQAINKAIDLEMSWLNYVLLGKV---YELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHh
Confidence 999999999999999963323332211 1123578888888877764
No 131
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.46 E-value=0.00019 Score=45.96 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 253 VASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 253 ~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
.+|+.+|.+|..+|++++|+++|++|++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 47888999999999999999999999888874
No 132
>PRK11906 transcriptional regulator; Provisional
Probab=97.43 E-value=0.0061 Score=62.14 Aligned_cols=86 Identities=9% Similarity=-0.088 Sum_probs=71.0
Q ss_pred HHHHHHHHHHH---hhccCHHHHH-HHHHHHHH---------cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC
Q 019871 199 EIQMQNYMKKK---EQKERREQDL-REGLQLYR---------TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL 265 (334)
Q Consensus 199 e~q~~~y~~~i---el~~~~~~~~-nlG~al~~---------~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l 265 (334)
+.++.-+.+++ +++|....++ -++.+++. ...-.+|++.-++|++++|.| +.+++.+|.++...
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D---a~a~~~~g~~~~~~ 351 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD---GKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhh
Confidence 44556678888 8999887766 44444332 345678999999999999999 68999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCHH
Q 019871 266 NQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 266 G~~eeAl~~lekAIelgp~~~~ 287 (334)
++++.|+..|++|+.++|+...
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~ 373 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIAS 373 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHH
Confidence 9999999999999999998765
No 133
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.41 E-value=0.0016 Score=71.22 Aligned_cols=65 Identities=9% Similarity=-0.010 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.+|..+..+|+|++|++.|+++++.+|++ +.+++.++..|...++.++|++.+++++..+|.+..
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n---~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~ 171 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTN---PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN 171 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence 55778888999999999999999999998 568888899999999999999999999999988444
No 134
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.40 E-value=0.0012 Score=68.43 Aligned_cols=63 Identities=22% Similarity=0.171 Sum_probs=56.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeld-----P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
++|..|..+++|.+|+..|++|+.+- ++++..+.++.|+|..|.+.|++++|..+|++|+++-
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 59999999999999999999999763 4444447899999999999999999999999999984
No 135
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.36 E-value=0.0018 Score=64.56 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=39.0
Q ss_pred HHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 206 MKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 206 ~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
.+.++..|++... +.+|..+++.++|++|.+.|+++++.+|++ ..+..+|.++.++|+.++|.++|++++.+
T Consensus 318 e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~----~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 318 RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA----YDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3334444554443 355555555555555555555555555553 34455555555555555555555555543
No 136
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.002 Score=61.38 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
..|+.+..+++.|+|.+|...|..-+..-|+....+.++|++|-|+..+|++++|...|..+++-.|...
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 3789999999999999999999999999999987789999999999999999999999999999888643
No 137
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00063 Score=64.08 Aligned_cols=80 Identities=13% Similarity=0.073 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 200 IQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 200 ~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
-++.+|.++|-++|..+..+ |.+.+++++.+|+.+...+.+|++++|+. ..++|-+|.+++....+++||..|.+|
T Consensus 28 ~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~---vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 28 DAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL---VKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH---HHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34569999999999987777 99999999999999999999999999998 789999999999999999999999999
Q ss_pred HHcC
Q 019871 279 LLAG 282 (334)
Q Consensus 279 Ielg 282 (334)
..+.
T Consensus 105 ~sl~ 108 (284)
T KOG4642|consen 105 YSLL 108 (284)
T ss_pred HHHH
Confidence 6654
No 138
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.32 E-value=0.00065 Score=71.90 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhccCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 201 QMQNYMKKKEQKERREQ--DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~--~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
+-..|.++.|+..+... ...+|...+..++|++|.++++..++++|-. ...||++|||+.++++++.|.++|.++
T Consensus 469 d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq---~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ---LGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred ChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc---hhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 34566677766544322 2477777888999999999999999999987 469999999999999999999999999
Q ss_pred HHcCCCCHH
Q 019871 279 LLAGYEDFK 287 (334)
Q Consensus 279 Ielgp~~~~ 287 (334)
+.++|+++.
T Consensus 546 vtL~Pd~~e 554 (777)
T KOG1128|consen 546 VTLEPDNAE 554 (777)
T ss_pred hhcCCCchh
Confidence 999999876
No 139
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.0031 Score=61.80 Aligned_cols=129 Identities=17% Similarity=0.173 Sum_probs=91.9
Q ss_pred HHHhhhhHHHHhhcccchhhhhchhc---HHH----H--HHHhhchhhhhhhHHHHHHHHHHHHHhhccCHHHH-HHHHH
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGELS---EKE----I--IRAERNSGVISNRVREIQMQNYMKKKEQKERREQD-LREGL 223 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l~---ek~----~--~~a~~n~g~~~~~l~e~q~~~y~~~iel~~~~~~~-~nlG~ 223 (334)
+.+..-.||.+-.+..++|+...++. .++ | |.=+.....--......++....++++-+|+...+ +-+|.
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~ 222 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGR 222 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhH
Confidence 44556668888888888887433221 111 1 11111111111112233556666777777776444 59999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 224 al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
+....|+|+.|++.++.+++.||++- +.+.--+..||..+|+.++.+.+|.++++..+.
T Consensus 223 v~~~~g~y~~AV~~~e~v~eQn~~yl--~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 223 VELAKGDYQKAVEALERVLEQNPEYL--SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHhccchHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999984 688899999999999999999999999998775
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.28 E-value=0.0021 Score=54.87 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhccCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871 198 REIQMQNYMKKKEQKERRE----QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~----~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
.+.+...|...++..++.. ..+.++.+++..|+|++|+..++.+ .-.+- .+.++.-+|.+|...|++++|+.
T Consensus 64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~---~~~~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAF---KALAAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcch---HHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556667777776554432 2358999999999999999999762 22222 26789999999999999999999
Q ss_pred HHHHHH
Q 019871 274 ALEDAL 279 (334)
Q Consensus 274 ~lekAI 279 (334)
.|++||
T Consensus 140 ~y~~Al 145 (145)
T PF09976_consen 140 AYQKAL 145 (145)
T ss_pred HHHHhC
Confidence 999986
No 141
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.23 E-value=0.00081 Score=46.23 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 253 VASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 253 ~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.+|+.+|.+|..+|++++|++.|+++|+.+|++..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 48999999999999999999999999999999876
No 142
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.21 E-value=0.0031 Score=64.26 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
..+.+-+.+++.+.|.... .+++|.+|++.|++.+|+..+++.+..+|++ +..|+-+|-+|..+|+..+|...+-+
T Consensus 357 ~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d---p~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 357 KEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED---PNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHhCchHHHHHHHHH
Confidence 4455677778888888533 4599999999999999999999999999999 46888888877777665555555544
Q ss_pred HHHc
Q 019871 278 ALLA 281 (334)
Q Consensus 278 AIel 281 (334)
...+
T Consensus 434 ~~~~ 437 (484)
T COG4783 434 GYAL 437 (484)
T ss_pred HHHh
Confidence 4443
No 143
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.20 E-value=0.0034 Score=54.57 Aligned_cols=90 Identities=14% Similarity=0.067 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHHHHCCChHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPE-ESSVASYNVACCYSKLNQVKAGLSAL 275 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~-e~~~a~yNlA~ay~~lG~~eeAl~~l 275 (334)
...++.-|.+++.+-|+.+.+| |++.++--+|+.++|++.+++|+++.-.-. -.-.+|.++|..|..+|+-+.|-.+|
T Consensus 59 Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DF 138 (175)
T KOG4555|consen 59 LDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADF 138 (175)
T ss_pred hHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhH
Confidence 3446678889999999999888 999999999999999999999999864432 11368999999999999999999999
Q ss_pred HHHHHcCCCCHH
Q 019871 276 EDALLAGYEDFK 287 (334)
Q Consensus 276 ekAIelgp~~~~ 287 (334)
+.|-++|.....
T Consensus 139 e~AA~LGS~FAr 150 (175)
T KOG4555|consen 139 EAAAQLGSKFAR 150 (175)
T ss_pred HHHHHhCCHHHH
Confidence 999999987544
No 144
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.17 E-value=0.0018 Score=48.12 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 019871 199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~ 249 (334)
+.++..+...++++|.+...+ .+|.+++++|+|++|+..|+++++.+|+++
T Consensus 12 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 12 EEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 445677778888999987765 999999999999999999999999999873
No 145
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.16 E-value=0.0053 Score=67.16 Aligned_cols=88 Identities=9% Similarity=-0.028 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhhccCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERRE-QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~-~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
..+...+.+.++.+|... ....+...+...|++++|+..+++++ +|++.. ....-.+|.+|..+|++++|++.|++
T Consensus 51 ~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~-~~~llalA~ly~~~gdyd~Aiely~k 127 (822)
T PRK14574 51 APVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNIS-SRGLASAARAYRNEKRWDQALALWQS 127 (822)
T ss_pred HHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356778888999999874 44477788889999999999999999 555421 34555558899999999999999999
Q ss_pred HHHcCCCCHHHH
Q 019871 278 ALLAGYEDFKRV 289 (334)
Q Consensus 278 AIelgp~~~~~i 289 (334)
+++.+|++....
T Consensus 128 aL~~dP~n~~~l 139 (822)
T PRK14574 128 SLKKDPTNPDLI 139 (822)
T ss_pred HHhhCCCCHHHH
Confidence 999999986533
No 146
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.15 E-value=0.0031 Score=62.95 Aligned_cols=116 Identities=6% Similarity=-0.053 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhccCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQD---LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA 274 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~---~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~ 274 (334)
.+.+.....+.++..|++... .-........++.+.+++.++++++.+|+++. ......+|..+.+.|++++|.++
T Consensus 279 ~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 279 HDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPK-CCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred hHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHcccHHHHHHH
Confidence 344444555555555554431 22233333345666666666666666666621 14555666666666666666666
Q ss_pred HH--HHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhhc
Q 019871 275 LE--DALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFIN 317 (334)
Q Consensus 275 le--kAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~ 317 (334)
|+ ++++..|+..... .- -..+....+-+++.+.|++.+..
T Consensus 358 le~a~a~~~~p~~~~~~-~L--a~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 358 FKNVAACKEQLDANDLA-MA--ADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHhHHhhcCCCHHHHH-HH--HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66 4555555533311 11 12233334455555555555443
No 147
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.15 E-value=0.0024 Score=64.92 Aligned_cols=93 Identities=15% Similarity=0.053 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHHhhccCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871 195 NRVREIQMQNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 195 ~~l~e~q~~~y~~~iel~~~~-~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
.+..+.+...|.+++.-+... +..||.|+.+..+|+.++|+++|-+.-.+=-++ ...++++|..|-.+.+..+||+
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn---~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN---AEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhCHHHHHH
Confidence 344455666777766433222 334688888888889999998888877766666 5688999999999999999999
Q ss_pred HHHHHHHcCCCCHHHHh
Q 019871 274 ALEDALLAGYEDFKRVR 290 (334)
Q Consensus 274 ~lekAIelgp~~~~~i~ 290 (334)
+|-+|..+=|.++..+.
T Consensus 580 ~~~q~~slip~dp~ils 596 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILS 596 (840)
T ss_pred HHHHhcccCCCCHHHHH
Confidence 99999888887765443
No 148
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=97.12 E-value=0.00097 Score=49.47 Aligned_cols=40 Identities=33% Similarity=0.699 Sum_probs=35.9
Q ss_pred CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeee
Q 019871 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
.|+|+.+....+++++|..|.+++.|++++ +++||+|+.+
T Consensus 1 ~~~G~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~I 40 (70)
T cd00136 1 GGLGFSIRGGTEGGVVVLSVEPGSPAERAG-LQAGDVILAV 40 (70)
T ss_pred CCccEEEecCCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEE
Confidence 478999977666699999999999999887 9999999998
No 149
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.12 E-value=0.003 Score=67.29 Aligned_cols=95 Identities=20% Similarity=0.131 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH--HHHHHHHcCCCCHHHHhcChhhH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS--ALEDALLAGYEDFKRVRTDPDLE 296 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~--~lekAIelgp~~~~~i~~Dpdl~ 296 (334)
+..|..+...|+++||.++|..|+.+||++ ......+|-|+...|+..-|.+ .+..|+++||.+.+++..-. .
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al~ldP~h---v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG--~ 762 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVALALDPDH---VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG--E 762 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH--H
Confidence 488899999999999999999999999999 5789999999999999988888 99999999999999544433 2
Q ss_pred HHhcChHHHHHHHHHHHhhhch
Q 019871 297 NLRASEEFDVLLKRFDESFINE 318 (334)
Q Consensus 297 ~Lr~dp~F~~lL~~~~e~~~~~ 318 (334)
.+++.+.++++.++|+-.+.++
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHccchHHHHHHHHHHHhhc
Confidence 4677788999999998887654
No 150
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.12 E-value=0.0011 Score=67.27 Aligned_cols=69 Identities=13% Similarity=0.009 Sum_probs=52.7
Q ss_pred cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH--HHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 244 SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK--RVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 244 ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~--~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
.+|++ +.+|+|+|.+|..+|++++|+.+|++||+++|++.+ .+..+.... +....++.++++.+++.+.
T Consensus 70 ~dP~~---a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAca-ya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 70 ADVKT---AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACC-HAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Confidence 45665 789999999999999999999999999999999764 233333322 3344677788877777764
No 151
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.09 E-value=0.0022 Score=46.93 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871 197 VREIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (334)
Q Consensus 197 l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~ 248 (334)
-...++..|.+.++.+|++.+. +.+|.++++.|++++|...+++++..+|++
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3455677888889999987665 599999999999999999999999999997
No 152
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.08 E-value=0.0003 Score=68.99 Aligned_cols=86 Identities=9% Similarity=0.023 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
...+++.|-.+|+++|..+..+ +++.++.++++...|++.|+.|++++|+. +..|-.++.+...+|++++|-++|.
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds---a~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS---AKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc---ccccchhhHHHHHhhchHHHHHHHH
Confidence 4446678888999999988887 99999999999999999999999999998 4578888999999999999999999
Q ss_pred HHHHcCCCCH
Q 019871 277 DALLAGYEDF 286 (334)
Q Consensus 277 kAIelgp~~~ 286 (334)
.|.+++++-.
T Consensus 207 ~a~kld~dE~ 216 (377)
T KOG1308|consen 207 LACKLDYDEA 216 (377)
T ss_pred HHHhccccHH
Confidence 9999988633
No 153
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.0056 Score=66.73 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 200 IQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 200 ~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
.+.+.+.-.+...|+... .+-++-..|..|+|-.|+.+|.++|.++|... +..-..+|.|+.++|+.+.|+..+++|
T Consensus 148 ~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~--aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK--ADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC--CCccchhhhHHHhccchhhHHHHHHHH
Confidence 344556666666676544 45888999999999999999999999999875 567788899999999999999999999
Q ss_pred HHcCCCCHHHHhcChhhHH-HhcChHHHHHHHHHHHhh----hchhHHHHHHHhhcc
Q 019871 279 LLAGYEDFKRVRTDPDLEN-LRASEEFDVLLKRFDESF----INENAINAIKSLFGL 330 (334)
Q Consensus 279 Ielgp~~~~~i~~Dpdl~~-Lr~dp~F~~lL~~~~e~~----~~~~ai~~~k~~~~~ 330 (334)
++++|.+...+..-..+.- ......|+..+..+...+ .|-.+++.+-.-|=|
T Consensus 226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf 282 (1018)
T KOG2002|consen 226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYF 282 (1018)
T ss_pred HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh
Confidence 9999987764322221111 122234555554444444 444455555544433
No 154
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.04 E-value=0.0078 Score=58.04 Aligned_cols=56 Identities=23% Similarity=0.204 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH
Q 019871 230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR 288 (334)
Q Consensus 230 ~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~ 288 (334)
+|.+|.-.|++.....+.. +..++.+|+|+..+|++++|.+.+++|++.+|.+.+.
T Consensus 182 ~~~~A~y~f~El~~~~~~t---~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGST---PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp CCCHHHHHHHHHHCCS--S---HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred hHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 4666666666655544443 4556666666666666666666666666666665543
No 155
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=97.02 E-value=0.0023 Score=48.62 Aligned_cols=58 Identities=24% Similarity=0.586 Sum_probs=43.8
Q ss_pred cCCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeecccccccccccc--chhhHHHHHHH
Q 019871 92 EQPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQ 156 (334)
Q Consensus 92 ~kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~--~~~~v~sai~~ 156 (334)
.+|+|+.+....+ ++++|..|.+++.|++++ +++||+|+.+- .+++. ++..+...+..
T Consensus 11 ~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~in------g~~i~~~~~~~~~~~l~~ 72 (82)
T cd00992 11 GGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVN------GVSVEGLTHEEAVELLKN 72 (82)
T ss_pred CCCcCEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEEC------CEEcCccCHHHHHHHHHh
Confidence 4789999976654 689999999999999977 99999999983 23444 44455554443
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.006 Score=58.82 Aligned_cols=95 Identities=15% Similarity=-0.017 Sum_probs=78.5
Q ss_pred hhhhhhhHH--HHHHHHHHHHHhhccCHHHHH-HHHHHHHHc---CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Q 019871 190 SGVISNRVR--EIQMQNYMKKKEQKERREQDL-REGLQLYRT---GKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (334)
Q Consensus 190 ~g~~~~~l~--e~q~~~y~~~iel~~~~~~~~-nlG~al~~~---g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~ 263 (334)
.|.+++.+. ..+...|.+++.+.|+..+.+ -+|.+++.. ..-.++...|++++++||.+ ..+.+-+|..+.
T Consensus 162 Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~---iral~lLA~~af 238 (287)
T COG4235 162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPAN---IRALSLLAFAAF 238 (287)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc---HHHHHHHHHHHH
Confidence 444444443 446789999999999987766 777777543 34678999999999999999 689999999999
Q ss_pred HCCChHHHHHHHHHHHHcCCCCHH
Q 019871 264 KLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 264 ~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
..|++.+|+...++-++..|.+..
T Consensus 239 e~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 239 EQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999998654
No 157
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0089 Score=56.84 Aligned_cols=93 Identities=14% Similarity=0.025 Sum_probs=75.9
Q ss_pred hhhHHHHHHHHHHHHHh--------hccCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHH
Q 019871 194 SNRVREIQMQNYMKKKE--------QKERREQD-----------LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVA 254 (334)
Q Consensus 194 ~~~l~e~q~~~y~~~ie--------l~~~~~~~-----------~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a 254 (334)
..+....+...|.+++. -+|..+++ +|...++...|+|-++++.+...|..+|.+ ..|
T Consensus 190 k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~n---vKA 266 (329)
T KOG0545|consen 190 KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN---VKA 266 (329)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch---HHH
Confidence 34445566677777664 23444443 388999999999999999999999999999 689
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHH
Q 019871 255 SYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRV 289 (334)
Q Consensus 255 ~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i 289 (334)
||.+|-+.+..=+.++|..+|.++|+++|.-....
T Consensus 267 ~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 267 YFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 99999999999999999999999999999855433
No 158
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.97 E-value=0.0056 Score=58.06 Aligned_cols=72 Identities=22% Similarity=0.251 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 214 ~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
....+++.|...++.|+|++|+..|++.....|..+....+...++.++.+.+++++|+...++=|.+.|..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Confidence 356678999999999999999999999999999987667899999999999999999999999999999963
No 159
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.006 Score=66.50 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=74.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhccCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC-
Q 019871 190 SGVISNRVREIQMQNYMKKKEQKERR--EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN- 266 (334)
Q Consensus 190 ~g~~~~~l~e~q~~~y~~~iel~~~~--~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG- 266 (334)
...|..+..+.+.+.|++++..+++. ...+-+|..+...|++++|+.+|+++++..|++ ..+.+-+||.|+..+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~---~etm~iLG~Lya~~~~ 391 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN---YETMKILGCLYAHSAK 391 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch---HHHHHHHHhHHHhhhh
Confidence 33444555677778888888777765 223488888888889999999999999888888 568888888888876
Q ss_pred ---ChHHHHHHHHHHHHcCCCCHH
Q 019871 267 ---QVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 267 ---~~eeAl~~lekAIelgp~~~~ 287 (334)
..+.|...+.++++..|.|.+
T Consensus 392 ~~~~~d~a~~~l~K~~~~~~~d~~ 415 (1018)
T KOG2002|consen 392 KQEKRDKASNVLGKVLEQTPVDSE 415 (1018)
T ss_pred hhHHHHHHHHHHHHHHhcccccHH
Confidence 678888888888888888776
No 160
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.017 Score=55.02 Aligned_cols=117 Identities=15% Similarity=0.059 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
..+++-|...++.+|.+...+ .+-.++-.+|+--+||+...+-++..+.+ ..+|..+|..|...|+|+.|.-+|++
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D---~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND---QEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 345666777777788876666 55555677899999999999999999999 57999999999999999999999999
Q ss_pred HHHcCCCCHHHHhcChhhHHH-hcChHHHHHHHHHHHhhhch
Q 019871 278 ALLAGYEDFKRVRTDPDLENL-RASEEFDVLLKRFDESFINE 318 (334)
Q Consensus 278 AIelgp~~~~~i~~Dpdl~~L-r~dp~F~~lL~~~~e~~~~~ 318 (334)
.+=+.|.++-....-.++--. -.-...+-..+-|.+++.+.
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 999999877643332222111 11223444455666666443
No 161
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.95 E-value=0.012 Score=61.07 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=85.8
Q ss_pred hhhhHHHHhhcccchhhhhc-hhcH--H------HHHHHhh-chhhhhhhHH--HHHHHHHHHHHhhcc-----C-H---
Q 019871 157 RVGPLLMKMQKRYGKMEQTG-ELSE--K------EIIRAER-NSGVISNRVR--EIQMQNYMKKKEQKE-----R-R--- 215 (334)
Q Consensus 157 R~G~V~lkLek~~~aie~~~-~l~e--k------~~~~a~~-n~g~~~~~l~--e~q~~~y~~~iel~~-----~-~--- 215 (334)
.++..|...+++..++..+. ++.. + -...... +.|+++..+. ..+.--|.+++.+-. . .
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 38888888888888887433 2222 1 1111122 2444444442 334555666654322 1 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPT-----PEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~-----~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
....|++.+|++.|+|++|..+|++|+++--. .++.+..+.+++..+...+++++|+..|++++++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 22349999999999999999999999987432 2334678999999999999999999999999886
No 162
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0065 Score=61.29 Aligned_cols=86 Identities=12% Similarity=-0.065 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
+|-+..-|.+.+.++|...-+. .++..+...|+++++|..++++|...|+. ..|..+|-++...+.+++|+++|.
T Consensus 420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~----~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV----NLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc----HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4666677778888888876665 77888899999999999999999999997 689999999999999999999999
Q ss_pred HHHHcCCCCHH
Q 019871 277 DALLAGYEDFK 287 (334)
Q Consensus 277 kAIelgp~~~~ 287 (334)
+|+.++|.+-.
T Consensus 496 ~ALr~dP~~~~ 506 (564)
T KOG1174|consen 496 KALRQDPKSKR 506 (564)
T ss_pred HHHhcCccchH
Confidence 99999998754
No 163
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.92 E-value=0.0062 Score=66.92 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=68.1
Q ss_pred HHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC----------------cchHHHHHHHHHHHHC
Q 019871 203 QNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPE----------------ESSVASYNVACCYSKL 265 (334)
Q Consensus 203 ~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~----------------e~~~a~yNlA~ay~~l 265 (334)
+-....++..|+....+ .+|..+++.+++.+|.-. +++.+.+.+. +...|++.+|.||.++
T Consensus 52 ~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~ 129 (906)
T PRK14720 52 DICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKL 129 (906)
T ss_pred HHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHc
Confidence 33345666777775554 999999999999998877 7887777662 1126999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCHHHH
Q 019871 266 NQVKAGLSALEDALLAGYEDFKRV 289 (334)
Q Consensus 266 G~~eeAl~~lekAIelgp~~~~~i 289 (334)
|+.++|+..++++|+++|+|...+
T Consensus 130 g~~~ka~~~yer~L~~D~~n~~aL 153 (906)
T PRK14720 130 NENKKLKGVWERLVKADRDNPEIV 153 (906)
T ss_pred CChHHHHHHHHHHHhcCcccHHHH
Confidence 999999999999999999877643
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.84 E-value=0.0069 Score=57.61 Aligned_cols=128 Identities=20% Similarity=0.116 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHhhccCH------HHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHHHHC
Q 019871 197 VREIQMQNYMKKKEQKERR------EQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEE----SSVASYNVACCYSKL 265 (334)
Q Consensus 197 l~e~q~~~y~~~iel~~~~------~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e----~~~a~yNlA~ay~~l 265 (334)
..+.++..|.+++++.... ... .+.|..+.++|+|++|++.|++++...-++.. ....+.+...|+...
T Consensus 130 d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~ 209 (282)
T PF14938_consen 130 DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAM 209 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHc
Confidence 4567788898888764321 111 38999999999999999999999975433211 123567888899999
Q ss_pred CChHHHHHHHHHHHHcCCCCH---HHHhcChhhHHHh--cChHHHHHHHHHHHhhhchhHHHHH
Q 019871 266 NQVKAGLSALEDALLAGYEDF---KRVRTDPDLENLR--ASEEFDVLLKRFDESFINENAINAI 324 (334)
Q Consensus 266 G~~eeAl~~lekAIelgp~~~---~~i~~Dpdl~~Lr--~dp~F~~lL~~~~e~~~~~~ai~~~ 324 (334)
|+.-.|-..+++....+|... +.-.-..-++.+. +...|...+..|+..-.+++|.-.|
T Consensus 210 ~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~ 273 (282)
T PF14938_consen 210 GDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKM 273 (282)
T ss_dssp T-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHH
Confidence 999999999999999987532 2111111122222 2457999999999999999987543
No 165
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.005 Score=60.47 Aligned_cols=102 Identities=18% Similarity=0.140 Sum_probs=78.7
Q ss_pred HHHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHH----HHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcch
Q 019871 180 EKEIIRAERNSGVISNRV--REIQMQNYMKKKEQKERRE----QDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESS 252 (334)
Q Consensus 180 ek~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~----~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~ 252 (334)
++++...+.-.|+-.-.. ...+...|-+.|..+-.+. ..| |++.+.+..|+|..||..+.+|+.++|++ .
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h---~ 153 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH---L 153 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch---h
Confidence 333333344445444333 3556778888877654432 233 99999999999999999999999999998 6
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 253 VASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 253 ~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
.++|.-|-|+..+.++++|+.||+..+..+-+
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 89999999999999999999999998887655
No 166
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.0079 Score=59.79 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
....|.++|.+|+|++|+..|+-+...+.-+ +..|.|+|||+.-+|++.+|...-++|
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~---~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAP---AELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCC---cccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 4578999999999999999999998644333 569999999999999999999988877
No 167
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.83 E-value=0.0047 Score=59.54 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=67.9
Q ss_pred HHHHHHHhhccCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh-HHHHHHHHHHHH
Q 019871 203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV-KAGLSALEDALL 280 (334)
Q Consensus 203 ~~y~~~iel~~~~-~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~-eeAl~~lekAIe 280 (334)
.-|.+-.+..+.. .....++.++..+|+|++|...+++|++.+|++ +.++.|+++|...+|+. +.+-+.+.+.-.
T Consensus 188 y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~---~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 188 YIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND---PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH---HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3444443333333 333478999999999999999999999999998 67999999999999999 556677777777
Q ss_pred cCCCCHHHHhcChhhHHHhcChHHHHHHHHH
Q 019871 281 AGYEDFKRVRTDPDLENLRASEEFDVLLKRF 311 (334)
Q Consensus 281 lgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~ 311 (334)
.+|+.+ ++.. +. ..+..|.+++.+|
T Consensus 265 ~~p~h~-~~~~---~~--~~~~~FD~~~~ky 289 (290)
T PF04733_consen 265 SNPNHP-LVKD---LA--EKEAEFDRAVAKY 289 (290)
T ss_dssp HTTTSH-HHHH---HH--HHHHHHHHHHHCC
T ss_pred hCCCCh-HHHH---HH--HHHHHHHHHHHhc
Confidence 788733 2211 11 2234677776655
No 168
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.82 E-value=0.012 Score=58.90 Aligned_cols=94 Identities=12% Similarity=-0.049 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH--HHHhcCh
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF--KRVRTDP 293 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~--~~i~~Dp 293 (334)
...+..+..+...|++++|++.++++++..|++..... ..-+.......++.+.+++.++++++..|+++ ..... -
T Consensus 264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s-L 341 (409)
T TIGR00540 264 ALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA-L 341 (409)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH-H
Confidence 44458888889999999999999999998888742100 12233444445788889999999999988888 42212 1
Q ss_pred hhHHHhcChHHHHHHHHHH
Q 019871 294 DLENLRASEEFDVLLKRFD 312 (334)
Q Consensus 294 dl~~Lr~dp~F~~lL~~~~ 312 (334)
....++ ..+|.++.+.|+
T Consensus 342 g~l~~~-~~~~~~A~~~le 359 (409)
T TIGR00540 342 GQLLMK-HGEFIEAADAFK 359 (409)
T ss_pred HHHHHH-cccHHHHHHHHH
Confidence 222222 356666766666
No 169
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.79 E-value=0.0022 Score=37.92 Aligned_cols=31 Identities=32% Similarity=0.360 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 254 ASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 254 a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
+|+++|.+|..+|++++|+.++++++++.|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5777777777777777777777777776664
No 170
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.76 E-value=0.031 Score=56.41 Aligned_cols=92 Identities=15% Similarity=0.016 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE 296 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~ 296 (334)
..+-++.++...++-.+|++...+++..+|++ +..+.-.|..+...++++.|+..+++|+++.|.+++
T Consensus 202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~--------- 269 (395)
T PF09295_consen 202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQD---SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFE--------- 269 (395)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH---------
Confidence 44578888889999999999999999999998 678899999999999999999999999999999876
Q ss_pred HHhcChHHHHHHHHHHHhhhchhHHHHHHH
Q 019871 297 NLRASEEFDVLLKRFDESFINENAINAIKS 326 (334)
Q Consensus 297 ~Lr~dp~F~~lL~~~~e~~~~~~ai~~~k~ 326 (334)
-|..|.+.|-..-.+++|+-++-+
T Consensus 270 ------~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 270 ------TWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred ------HHHHHHHHHHhcCCHHHHHHHHhc
Confidence 233344455555555555544443
No 171
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.76 E-value=0.0023 Score=40.83 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPT 247 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~ 247 (334)
..+.+|.++.++|++++|+++|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4568999999999999999999999999995
No 172
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=96.76 E-value=0.0029 Score=49.01 Aligned_cols=38 Identities=37% Similarity=0.645 Sum_probs=33.0
Q ss_pred cceeEeecCC-CceEEEeeCCCCccccccccccCcEeeee
Q 019871 95 YGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 95 lgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
+|+.+....+ ++++|..|.+++.|+++| +++||+|+.+
T Consensus 3 lGv~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~i 41 (82)
T PF13180_consen 3 LGVTVQNLSDTGGVVVVSVIPGSPAAKAG-LQPGDIILAI 41 (82)
T ss_dssp -SEEEEECSCSSSEEEEEESTTSHHHHTT-S-TTEEEEEE
T ss_pred ECeEEEEccCCCeEEEEEeCCCCcHHHCC-CCCCcEEEEE
Confidence 6899977654 699999999999999999 9999999998
No 173
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.72 E-value=0.0061 Score=66.72 Aligned_cols=91 Identities=12% Similarity=0.056 Sum_probs=72.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHh
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLR 299 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr 299 (334)
.+|..+.+.+++..|+..|+.|+..+|.+ ...|-.+|-+|...|++..|++.|.||..++|...---..-. ....
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD---~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A--~~ec 641 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPKD---YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEA--VMEC 641 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCchh---HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHH--HHHH
Confidence 67888889999999999999999999998 679999999999999999999999999999998543111111 1233
Q ss_pred cChHHHHHHHHHHHhh
Q 019871 300 ASEEFDVLLKRFDESF 315 (334)
Q Consensus 300 ~dp~F~~lL~~~~e~~ 315 (334)
..++|+.++..+.+.+
T Consensus 642 d~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLII 657 (1238)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 4567888887776554
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.71 E-value=0.0085 Score=56.98 Aligned_cols=140 Identities=12% Similarity=0.079 Sum_probs=85.6
Q ss_pred ccccchhhHHHHHHHhhhhHHHHhhcccchhhhhc---hhcHH----H-HHHHhhchhhhhhhH-HHHHHHHHHHHHhhc
Q 019871 142 WPAAEYGRTMYTIRQRVGPLLMKMQKRYGKMEQTG---ELSEK----E-IIRAERNSGVISNRV-REIQMQNYMKKKEQK 212 (334)
Q Consensus 142 w~~~~~~~v~sai~~R~G~V~lkLek~~~aie~~~---~l~ek----~-~~~a~~n~g~~~~~l-~e~q~~~y~~~iel~ 212 (334)
|+..++..... ...+.|+.|...+++..+.+... .+.++ . ....+...+.+.... ...++..|.+++++.
T Consensus 26 ~~~~~~e~Aa~-~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y 104 (282)
T PF14938_consen 26 SKKPDYEEAAD-LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIY 104 (282)
T ss_dssp -SCHHHHHHHH-HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 33344544444 56888888888888877776422 22221 0 112222233332222 244566777777653
Q ss_pred cC------HHHH-HHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 213 ER------REQD-LREGLQLYRT-GKYEVAREKFESVLGSKPTPE---ESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 213 ~~------~~~~-~nlG~al~~~-g~yeeAl~~fekALeldP~~~---e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
.. .+.. .++|..+.+. |++++|+++|++|+++-.... .....+.++|.++..+|++++|++.|++.+..
T Consensus 105 ~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 105 REAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 21 1222 3888888888 999999999999998743321 12456789999999999999999999999875
Q ss_pred C
Q 019871 282 G 282 (334)
Q Consensus 282 g 282 (334)
.
T Consensus 185 ~ 185 (282)
T PF14938_consen 185 C 185 (282)
T ss_dssp C
T ss_pred h
Confidence 3
No 175
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.67 E-value=0.002 Score=42.31 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=29.0
Q ss_pred HHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHH
Q 019871 205 YMKKKEQKERREQDL-REGLQLYRTGKYEVARE 236 (334)
Q Consensus 205 y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~ 236 (334)
|.++|+++|++..++ ++|.++...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 788999999998876 99999999999999963
No 176
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.64 E-value=0.083 Score=52.06 Aligned_cols=105 Identities=19% Similarity=0.078 Sum_probs=81.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhc--ChhhHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRT--DPDLEN 297 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~--Dpdl~~ 297 (334)
.++..+....+.+.|+..+.+|+..||+. ..+-.-+|.++...|+++.|++.++++++.||++...+.. -.....
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~c---vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKC---VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccc---eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998 5788999999999999999999999999999997764321 112223
Q ss_pred HhcChHHHHHHHHHHHhhhchhHHHHHHHh
Q 019871 298 LRASEEFDVLLKRFDESFINENAINAIKSL 327 (334)
Q Consensus 298 Lr~dp~F~~lL~~~~e~~~~~~ai~~~k~~ 327 (334)
+-+..+|...|.++-+.+.+..++.++-.+
T Consensus 262 lg~~~~~~~fL~~~~~~~~g~~~~l~l~~l 291 (389)
T COG2956 262 LGKPAEGLNFLRRAMETNTGADAELMLADL 291 (389)
T ss_pred hCCHHHHHHHHHHHHHccCCccHHHHHHHH
Confidence 333445666666666666666666555444
No 177
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.012 Score=61.30 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------------------Cc-chHHHHHHHHHHHHCCChH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP---------------------------EE-SSVASYNVACCYSKLNQVK 269 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~---------------------------~e-~~~a~yNlA~ay~~lG~~e 269 (334)
..-.|..+|++|+|++|++.|+..++-+-++ ++ ....+||.||.+...|+|.
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~ 192 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYN 192 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHH
Confidence 3478899999999999999999986554332 11 2578999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 019871 270 AGLSALEDALLAG 282 (334)
Q Consensus 270 eAl~~lekAIelg 282 (334)
+|++.|++|+.++
T Consensus 193 qA~elL~kA~~~~ 205 (652)
T KOG2376|consen 193 QAIELLEKALRIC 205 (652)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999996654
No 178
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.61 E-value=0.0036 Score=41.26 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 254 ASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 254 a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
+|.++|.+|..+|++++|+++|++||.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999996655
No 179
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.55 E-value=0.023 Score=56.73 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhccCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 201 QMQNYMKKKEQKERREQD--LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~--~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
+...+.++.+..|+.... ...+..+...|++++|+..+++.++.+|++ +.++.-++.+|...|++++|++.|.+.
T Consensus 137 A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~---~~al~ll~~~~~~~gdw~~a~~~l~~l 213 (398)
T PRK10747 137 ANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH---PEVLRLAEQAYIRTGAWSSLLDILPSM 213 (398)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345555666666665433 356889999999999999999999999998 679999999999999999999888888
Q ss_pred HHcCCCC
Q 019871 279 LLAGYED 285 (334)
Q Consensus 279 Ielgp~~ 285 (334)
.+....+
T Consensus 214 ~k~~~~~ 220 (398)
T PRK10747 214 AKAHVGD 220 (398)
T ss_pred HHcCCCC
Confidence 8776543
No 180
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.53 E-value=0.01 Score=61.74 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
+.++..+...|+|++|++..++||+..|+. ...|+.+|-+|-..|++++|.++++.|-+++..|+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTL---VELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 478888889999999999999999999998 57999999999999999999999999999998654
No 181
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.52 E-value=0.038 Score=54.60 Aligned_cols=84 Identities=17% Similarity=0.020 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871 201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI 279 (334)
++.-|-+-++..|.+-..+ ..+.++..++++++|++.|..+++++|.+.| +.--+|.-|.--++.+-|+.+|++-+
T Consensus 275 AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE---aiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 275 ALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE---AIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred HHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce---eeeeeeeccccCCChHHHHHHHHHHH
Confidence 3334444444444443332 4555555666666666666666666666532 33334444555566666666666666
Q ss_pred HcCCCCHH
Q 019871 280 LAGYEDFK 287 (334)
Q Consensus 280 elgp~~~~ 287 (334)
.+|-.+.+
T Consensus 352 qmG~~spe 359 (478)
T KOG1129|consen 352 QMGAQSPE 359 (478)
T ss_pred HhcCCChH
Confidence 66555443
No 182
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.48 E-value=0.0041 Score=39.06 Aligned_cols=31 Identities=23% Similarity=0.376 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 254 ASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 254 a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
++|++|.||.++|++++|+..|++.++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 6778888888888888888888888777665
No 183
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.02 Score=54.49 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCCc-------chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGS--------KPTPEE-------SSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALel--------dP~~~e-------~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp 283 (334)
...|+.+|++|+|.||..+|..||.. .|..++ ....+-|.+-|+...|++-++++++...|...|
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~ 261 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP 261 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999999843 455432 235788999999999999999999999999999
Q ss_pred CCHH
Q 019871 284 EDFK 287 (334)
Q Consensus 284 ~~~~ 287 (334)
.|.+
T Consensus 262 ~nvK 265 (329)
T KOG0545|consen 262 GNVK 265 (329)
T ss_pred chHH
Confidence 8776
No 184
>PRK10941 hypothetical protein; Provisional
Probab=96.45 E-value=0.016 Score=55.46 Aligned_cols=65 Identities=20% Similarity=0.125 Sum_probs=59.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
|+=.++.+.++|+.|+.+.+..+.++|++ +.-+--+|.+|.++|.+..|+.+|+.-|+.-|++..
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~d---p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPED---PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 56668899999999999999999999998 467889999999999999999999999999998554
No 185
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.42 E-value=0.053 Score=57.21 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=74.3
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChH
Q 019871 191 GVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVK 269 (334)
Q Consensus 191 g~~~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~e 269 (334)
+.+..+++-++ ..+...|...+.+ -+|+.+..+|+-++|..+...++..|+.. ..-|+-+|..+....+|+
T Consensus 21 kQYkkgLK~~~-----~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S---~vCwHv~gl~~R~dK~Y~ 92 (700)
T KOG1156|consen 21 KQYKKGLKLIK-----QILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS---HVCWHVLGLLQRSDKKYD 92 (700)
T ss_pred HHHHhHHHHHH-----HHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc---chhHHHHHHHHhhhhhHH
Confidence 44555555443 2233456665554 88999999999999999999999999988 578999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHhcChh
Q 019871 270 AGLSALEDALLAGYEDFKRVRTDPD 294 (334)
Q Consensus 270 eAl~~lekAIelgp~~~~~i~~Dpd 294 (334)
+||++|+.|+.++|+|.. |+.|-.
T Consensus 93 eaiKcy~nAl~~~~dN~q-ilrDls 116 (700)
T KOG1156|consen 93 EAIKCYRNALKIEKDNLQ-ILRDLS 116 (700)
T ss_pred HHHHHHHHHHhcCCCcHH-HHHHHH
Confidence 999999999999999766 444443
No 186
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.40 E-value=0.018 Score=48.74 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
..++..+...|++++|+..+++++.++|.+ -.+|..+-.+|...|+..+|+..|++....
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~---E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYD---EEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 377788899999999999999999999998 479999999999999999999999998554
No 187
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.39 E-value=0.015 Score=52.66 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=51.4
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCCCcchHHHH
Q 019871 189 NSGVISNRVREIQMQNYMKKKEQKERREQD-LREGLQLYRTGK-----------YEVAREKFESVLGSKPTPEESSVASY 256 (334)
Q Consensus 189 n~g~~~~~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~-----------yeeAl~~fekALeldP~~~e~~~a~y 256 (334)
..|.-...+.+.++..|..++.++|+..++ +++|+++...+. |+.|..+|++|...+|++ ..|
T Consensus 42 k~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-----e~Y 116 (186)
T PF06552_consen 42 KQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-----ELY 116 (186)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT------HHH
T ss_pred cCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-----HHH
Confidence 344334456777889999999999998776 499999987766 899999999999999998 567
Q ss_pred HHHHHHH
Q 019871 257 NVACCYS 263 (334)
Q Consensus 257 NlA~ay~ 263 (334)
+.++-.+
T Consensus 117 ~ksLe~~ 123 (186)
T PF06552_consen 117 RKSLEMA 123 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665444
No 188
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.37 E-value=0.033 Score=61.27 Aligned_cols=93 Identities=14% Similarity=0.061 Sum_probs=77.7
Q ss_pred hhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Q 019871 187 ERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (334)
Q Consensus 187 ~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~ 263 (334)
|...|.++..- ...++..++.++...|++-..+ -+|.+|.+.|+|.-|++.|++|..++|.+ ..+.|-.|....
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s---~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS---KYGRFKEAVMEC 641 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh---HHHHHHHHHHHH
Confidence 44455554333 2445677888888899987776 99999999999999999999999999998 578899999999
Q ss_pred HCCChHHHHHHHHHHHHcC
Q 019871 264 KLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 264 ~lG~~eeAl~~lekAIelg 282 (334)
.+|++.+|+..+++-|..-
T Consensus 642 d~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 9999999999999988763
No 189
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.36 E-value=0.018 Score=43.38 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 252 SVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 252 ~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
+.+++|+|.+|..+|++++|+.+|++|+++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999987
No 190
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.32 E-value=0.0029 Score=62.27 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=55.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 222 GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 222 G~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
+...+..|.++.||+.|..+|+++|.. +..|-++|.++.++.+...|+.+|..||+++|+..
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~---a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPL---AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCch---hhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence 345566777999999999999999998 67999999999999999999999999999999743
No 191
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=96.29 E-value=0.0078 Score=45.61 Aligned_cols=41 Identities=34% Similarity=0.757 Sum_probs=35.3
Q ss_pred CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 93 QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|+.+..... .+++|..|.+++.|+++| +++||+|+.+-
T Consensus 12 ~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In 54 (85)
T smart00228 12 GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVN 54 (85)
T ss_pred CcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 458888866543 689999999999999999 99999999983
No 192
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.19 E-value=0.0065 Score=46.24 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=33.3
Q ss_pred cceeEeecCCCceEEEeeCCCCccccccccccCcEeeee
Q 019871 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 95 lgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
+|+.+.. ++|++.|..|.+++.|+++| +++||+|+.+
T Consensus 3 ~G~~~~~-~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~I 39 (80)
T cd00990 3 LGLTLDK-EEGLGKVTFVRDDSPADKAG-LVAGDELVAV 39 (80)
T ss_pred ccEEEEc-cCCcEEEEEECCCChHHHhC-CCCCCEEEEE
Confidence 6888854 57789999999999999998 9999999998
No 193
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.18 E-value=0.0091 Score=35.11 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~ 248 (334)
.+++|.+++.+|++++|+.+|+++++++|++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 4589999999999999999999999998863
No 194
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.16 E-value=0.011 Score=55.33 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 214 ~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
.+.-.|.+|..+-..|-+.-|.-.|.+++.+.|+- +.+++-+|..+...|+++.|.+.|+-.++++|.
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m---~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc---HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 34456799999999999999999999999999998 679999999999999999999999999999997
No 195
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.10 E-value=0.11 Score=53.29 Aligned_cols=160 Identities=12% Similarity=0.026 Sum_probs=82.2
Q ss_pred HHHHhhhhHHHHhhcccchhhhhc-hhcHHH-HHHHhhchhhhhhhH--HHHHHHHHHHHHhhc-cCHHHHHHHHHHHHH
Q 019871 153 TIRQRVGPLLMKMQKRYGKMEQTG-ELSEKE-IIRAERNSGVISNRV--REIQMQNYMKKKEQK-ERREQDLREGLQLYR 227 (334)
Q Consensus 153 ai~~R~G~V~lkLek~~~aie~~~-~l~ek~-~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~-~~~~~~~nlG~al~~ 227 (334)
++.+..|++...-+++.++.+.+. +++... .-.+.+|-|.....+ .+.++.++.+.-.+- .+.+..+.++..|..
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL 570 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344455555555445555554322 222221 124455555544433 244445554433222 223344566667766
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCc-------------------------------chHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 228 TGKYEVAREKFESVLGSKPTPEE-------------------------------SSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 228 ~g~yeeAl~~fekALeldP~~~e-------------------------------~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
+.+..+||++|.++..+-|+++. .....-++|..|....=+++||.+|+
T Consensus 571 led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777777766666620 01233355555555555666777777
Q ss_pred HHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHh
Q 019871 277 DALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDES 314 (334)
Q Consensus 277 kAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~ 314 (334)
+|--+.|...+|-+-= -..+|..+.|+++++-|+..
T Consensus 651 kaaliqp~~~kwqlmi--asc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 651 KAALIQPNQSKWQLMI--ASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHHhcCccHHHHHHHH--HHHHHhcccHHHHHHHHHHH
Confidence 7776777655543221 12455566666666655443
No 196
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.07 E-value=0.0094 Score=37.35 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~ 248 (334)
..+++|.+++++|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 35789999999999999999999999999973
No 197
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.03 E-value=0.063 Score=55.96 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=66.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC-----ChHHHHHHHHHHHHcCCCCHHHHhcChh
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN-----QVKAGLSALEDALLAGYEDFKRVRTDPD 294 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG-----~~eeAl~~lekAIelgp~~~~~i~~Dpd 294 (334)
.+|..+.++|++++|...|...|+.+|++ ...|..+..|..... ..+.-+..|++--+..|. ...++.-|
T Consensus 43 ~rA~ll~kLg~~~eA~~~y~~Li~rNPdn---~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~-s~~~~rl~- 117 (517)
T PF12569_consen 43 KRAELLLKLGRKEEAEKIYRELIDRNPDN---YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR-SDAPRRLP- 117 (517)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc-ccchhHhh-
Confidence 88889999999999999999999999988 456666777763332 456666667766666554 22233333
Q ss_pred hHHHhcChHHHHHHHHHHHhhhchhHHHHHH
Q 019871 295 LENLRASEEFDVLLKRFDESFINENAINAIK 325 (334)
Q Consensus 295 l~~Lr~dp~F~~lL~~~~e~~~~~~ai~~~k 325 (334)
|..+ ..++|+..+..|=...+....-..+.
T Consensus 118 L~~~-~g~~F~~~~~~yl~~~l~KgvPslF~ 147 (517)
T PF12569_consen 118 LDFL-EGDEFKERLDEYLRPQLRKGVPSLFS 147 (517)
T ss_pred cccC-CHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3323 35789999888877776654434333
No 198
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=95.98 E-value=0.011 Score=60.56 Aligned_cols=85 Identities=24% Similarity=0.393 Sum_probs=61.3
Q ss_pred hccceEEEeec---CC-cceeEee----cCCCceEEEeeCCCCccccccccccCcEeeeeccc-cccccccccchhhHHH
Q 019871 82 EKYEEYEVEIE---QP-YGLKFAK----GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV-FGTEIWPAAEYGRTMY 152 (334)
Q Consensus 82 ~~~~~~~v~l~---kP-lgl~~~~----~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~-fg~~~w~~~~~~~v~s 152 (334)
|.++-++|+|. =| |||.+-- .-||||||..|-+||..++.|.|.+||-|+.|-.+ |+.--- ++-=+|+.
T Consensus 246 mslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSN--d~AVrvLR 323 (626)
T KOG3571|consen 246 MSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSN--DQAVRVLR 323 (626)
T ss_pred cceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCc--hHHHHHHH
Confidence 56788899887 56 9998832 25889999999999999999999999999997544 442111 22224555
Q ss_pred HHHHhhhhHHHHhhcc
Q 019871 153 TIRQRVGPLLMKMQKR 168 (334)
Q Consensus 153 ai~~R~G~V~lkLek~ 168 (334)
-|-.+.|++.+...+.
T Consensus 324 EaV~~~gPi~ltvAk~ 339 (626)
T KOG3571|consen 324 EAVSRPGPIKLTVAKC 339 (626)
T ss_pred HHhccCCCeEEEEeec
Confidence 5667788766554443
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.93 E-value=0.053 Score=54.99 Aligned_cols=126 Identities=15% Similarity=0.083 Sum_probs=88.0
Q ss_pred HhhhhHHHHhhcccchhhhhc-hhcH------HHHH-HHhhchhhhh--hhHHHHHHHHHHHHH----hhccC---HHHH
Q 019871 156 QRVGPLLMKMQKRYGKMEQTG-ELSE------KEII-RAERNSGVIS--NRVREIQMQNYMKKK----EQKER---REQD 218 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~~~-~l~e------k~~~-~a~~n~g~~~--~~l~e~q~~~y~~~i----el~~~---~~~~ 218 (334)
...|+.|.-++++..+|+... .+.. +..- +++-|.|+.. .+--+.+++.|...+ |+... +..+
T Consensus 199 GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQsc 278 (639)
T KOG1130|consen 199 GNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSC 278 (639)
T ss_pred cccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 346777777777777776422 1111 1111 3455665544 344567777777654 44433 3456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPT----PEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~----~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
|.+|+.|+-..+|+.||.++.+-|++..+ ..+ ..++|.+|.+|..+|..+.|+.+.++++++.
T Consensus 279 YSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe-~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 279 YSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE-LRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 89999999999999999999998766433 233 6899999999999999999999999887764
No 200
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.082 Score=53.60 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-------------------------------cchHHHHHHHHHHHHCCCh
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPE-------------------------------ESSVASYNVACCYSKLNQV 268 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~-------------------------------e~~~a~yNlA~ay~~lG~~ 268 (334)
.+|.+++..|++.+|+..|+++.-+||..- ..+.-|+--+|......++
T Consensus 237 ~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~ 316 (564)
T KOG1174|consen 237 ALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKF 316 (564)
T ss_pred HHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhH
Confidence 777777777888888888887777777751 1123455566666666777
Q ss_pred HHHHHHHHHHHHcCCCCHH-HHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 269 KAGLSALEDALLAGYEDFK-RVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 269 eeAl~~lekAIelgp~~~~-~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
..|+..-+|+|..+|.+.+ .+++... |++.++-++++=.|+...
T Consensus 317 ~rAL~~~eK~I~~~~r~~~alilKG~l---L~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 317 ERALNFVEKCIDSEPRNHEALILKGRL---LIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HHHHHHHHHHhccCcccchHHHhccHH---HHhccchHHHHHHHHHHH
Confidence 7777777777777777666 5566544 333334444444444433
No 201
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.78 E-value=0.48 Score=38.49 Aligned_cols=61 Identities=30% Similarity=0.373 Sum_probs=39.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 224 al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
+++..|+++.|+..|++++..+|........++.++..+...+++++|+..+.++++..+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 6777777777777777777666520011455666666666777777777777777777666
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.022 Score=54.82 Aligned_cols=75 Identities=23% Similarity=0.308 Sum_probs=64.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHh
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLR 299 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr 299 (334)
+++.++.-.++|.+|...|++.++.||.+ +.+-+|.|.|+.-+|+..+|++.++.+++..|.-. .++.-+.+|+
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~---~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~---l~es~~~nL~ 330 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRN---AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY---LHESVLFNLT 330 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCc---hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc---hhhhHHHHHH
Confidence 88888999999999999999999999999 57999999999999999999999999999988732 3333344454
Q ss_pred c
Q 019871 300 A 300 (334)
Q Consensus 300 ~ 300 (334)
.
T Consensus 331 t 331 (366)
T KOG2796|consen 331 T 331 (366)
T ss_pred H
Confidence 3
No 203
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=95.73 E-value=0.016 Score=44.42 Aligned_cols=37 Identities=38% Similarity=0.710 Sum_probs=33.0
Q ss_pred cceeEeecCCCceEEEeeCCCCccccccccccCcEeeee
Q 019871 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 95 lgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
+|+.|.. ++++++|..|.+++.|+++| +++||+|+.+
T Consensus 4 lG~~~~~-~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~v 40 (85)
T cd00988 4 IGLELKY-DDGGLVITSVLPGSPAAKAG-IKAGDIIVAI 40 (85)
T ss_pred EEEEEEE-cCCeEEEEEecCCCCHHHcC-CCCCCEEEEE
Confidence 6888854 56789999999999999987 9999999998
No 204
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.69 E-value=0.018 Score=46.18 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 234 AREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 234 Al~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
.+..++++++.+|++ ..+.|.+|.++...|++++|++.|-..+..++.+
T Consensus 7 ~~~al~~~~a~~P~D---~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDD---LDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 356677788888887 5688888888888888888888888888877664
No 205
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.69 E-value=0.022 Score=37.31 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 252 SVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 252 ~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
+.++.|+|.+|..+|++++|+..+++|+++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357899999999999999999999999886
No 206
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.65 E-value=0.017 Score=54.44 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=56.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 223 ~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
..+.+.++++.|.+.|.+++++-|++ ...|+.+|....+.|+++.|.+.|++.++++|++.-
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w---~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEW---AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchh---hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34578899999999999999999998 689999999999999999999999999999998654
No 207
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.61 E-value=0.05 Score=43.45 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=48.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCc------chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871 224 QLYRTGKYEVAREKFESVLGSKPTPEE------SSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 224 al~~~g~yeeAl~~fekALeldP~~~e------~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp 283 (334)
...+.|+|.+|++.+.+.++....... ...++.++|.++...|++++|+..+++||.+--
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 346889999999998888876544321 146889999999999999999999999998843
No 208
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.60 E-value=0.51 Score=53.33 Aligned_cols=61 Identities=15% Similarity=-0.010 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
.+...+.+.|++++|++.|+++++...... ...|..+..+|.+.|++++|++.|++..+.+
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLG--TVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 555666666666666666666665432211 3566666677777777777777776665543
No 209
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.58 E-value=0.51 Score=53.31 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=58.0
Q ss_pred hccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871 211 QKERREQDLREGLQLYRTGKYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 211 l~~~~~~~~nlG~al~~~g~yeeAl~~fekALe--ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp 283 (334)
..|+......+...|.+.|++++|++.|++..+ ..|+ ...|..+..+|.+.|++++|++.|++..+.|.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd----vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT----VSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 345555555889999999999999999999875 4565 47899999999999999999999999887664
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.53 E-value=0.14 Score=47.10 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHh-hccCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871 196 RVREIQMQNYMKKKE-QKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 196 ~l~e~q~~~y~~~ie-l~~~~-~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
+....+.+.|.+++. +.-.+ ...+-++.+++..+++.+|...+++..+.+|..-. ++.+.-.|.+|..+|++.+|..
T Consensus 103 Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~-pd~~Ll~aR~laa~g~~a~Aes 181 (251)
T COG4700 103 GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS-PDGHLLFARTLAAQGKYADAES 181 (251)
T ss_pred hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC-CCchHHHHHHHHhcCCchhHHH
Confidence 334556677887763 33333 33458889999999999999999999999987632 5567777889999999999999
Q ss_pred HHHHHHHcCCCCHHHHhcChhh
Q 019871 274 ALEDALLAGYEDFKRVRTDPDL 295 (334)
Q Consensus 274 ~lekAIelgp~~~~~i~~Dpdl 295 (334)
.|+-||...|.....++...-|
T Consensus 182 afe~a~~~ypg~~ar~~Y~e~L 203 (251)
T COG4700 182 AFEVAISYYPGPQARIYYAEML 203 (251)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999988854455554433
No 211
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.51 E-value=0.47 Score=38.54 Aligned_cols=84 Identities=30% Similarity=0.291 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhhccC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHCCChHHHH
Q 019871 198 REIQMQNYMKKKEQKER----REQDLREGLQLYRTGKYEVAREKFESVLGSKPT-PEESSVASYNVACCYSKLNQVKAGL 272 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~----~~~~~nlG~al~~~g~yeeAl~~fekALeldP~-~~e~~~a~yNlA~ay~~lG~~eeAl 272 (334)
...+...|.+.+...+. ....+..+..+...+++++|+..+.+++...|. . ...+.+++.++...+++++|+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~ 222 (291)
T COG0457 146 YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD---AEALLNLGLLYLKLGKYEEAL 222 (291)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccc---hHHHHHhhHHHHHcccHHHHH
Confidence 44555666666665541 233346777788999999999999999999998 4 478999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 019871 273 SALEDALLAGYE 284 (334)
Q Consensus 273 ~~lekAIelgp~ 284 (334)
..+.+++...|.
T Consensus 223 ~~~~~~~~~~~~ 234 (291)
T COG0457 223 EYYEKALELDPD 234 (291)
T ss_pred HHHHHHHhhCcc
Confidence 999999999987
No 212
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.51 E-value=0.021 Score=37.57 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSK 245 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeld 245 (334)
..++|.++.++|+|++|+.+|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3589999999999999999999966543
No 213
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.48 E-value=0.24 Score=54.03 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=63.7
Q ss_pred HHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871 205 YMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 205 y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp 283 (334)
--+.+...|+..-+. -+|..++++|++++|+.+++..-...+++ -..+--+-.||..+|+.++|+..|++|+..+|
T Consensus 32 ~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D---~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 32 LGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD---DLTLQFLQNVYRDLGKLDEAVHLYERANQKYP 108 (932)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc---hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC
Confidence 334455678776654 89999999999999997776666666665 36788889999999999999999999999999
Q ss_pred C
Q 019871 284 E 284 (334)
Q Consensus 284 ~ 284 (334)
.
T Consensus 109 ~ 109 (932)
T KOG2053|consen 109 S 109 (932)
T ss_pred c
Confidence 8
No 214
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.44 E-value=0.041 Score=40.02 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 254 ASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 254 a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.+|.+|.++.++|++++|..+++.+|++.|+|..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4677788888888888888888888888877654
No 215
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.40 E-value=0.16 Score=54.12 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHh
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLR 299 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr 299 (334)
.+...|.+.|++++|.+.|++..+ |+ ..+|+.+..+|.+.|+.++|++.|++.++.|.. |+..
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~~--~d----~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~--------Pd~~--- 427 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMPR--KN----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVA--------PNHV--- 427 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC--CC----eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CCHH---
Confidence 344444455555555555554432 22 234555555555555555555555555554432 2211
Q ss_pred cChHHHHHHHHHHHhhhchhHHHHHHHhh
Q 019871 300 ASEEFDVLLKRFDESFINENAINAIKSLF 328 (334)
Q Consensus 300 ~dp~F~~lL~~~~e~~~~~~ai~~~k~~~ 328 (334)
-|..+|..+.+.-..+.|.+.++...
T Consensus 428 ---T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 428 ---TFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred ---HHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 25666666666666666666666553
No 216
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.40 E-value=0.14 Score=43.84 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=61.4
Q ss_pred hhhhHHHHHHHHHHHHHhhccC-------HHH---HH---HHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCCc-c
Q 019871 193 ISNRVREIQMQNYMKKKEQKER-------REQ---DL---REGLQLYRTGKYEVAREKFESVLGS-------KPTPEE-S 251 (334)
Q Consensus 193 ~~~~l~e~q~~~y~~~iel~~~-------~~~---~~---nlG~al~~~g~yeeAl~~fekALel-------dP~~~e-~ 251 (334)
+..+..+.+..+|.++++..-. |.+ ++ -+.-++..+|+|++++..-+++|.. +.+... -
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 3445556677888888775422 111 12 7788899999999999988888854 333210 0
Q ss_pred hHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 252 SVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 252 ~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
..+-+++|.++..+|+.++|+..|++|-++
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 145689999999999999999999999775
No 217
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.34 E-value=0.27 Score=52.41 Aligned_cols=118 Identities=15% Similarity=0.050 Sum_probs=62.2
Q ss_pred hccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 211 QKERREQDLREGLQLYRTGKYEVAREKFESVLG---SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 211 l~~~~~~~~nlG~al~~~g~yeeAl~~fekALe---ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
..|+......+-.++.+.|++++|.+.|++..+ +.|+. ..|.-+..+|.+.|++++|++.+++. ...|+..-
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~----~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~ 496 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA----MHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNM 496 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc----cchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHH
Confidence 445555555666666777777777777776654 23432 34555666666666666666665543 12222110
Q ss_pred H--H------hcChhh-----HHH-hc----ChHHHHHHHHHHHhhhchhHHHHHHHhhcccCC
Q 019871 288 R--V------RTDPDL-----ENL-RA----SEEFDVLLKRFDESFINENAINAIKSLFGLLDK 333 (334)
Q Consensus 288 ~--i------~~Dpdl-----~~L-r~----dp~F~~lL~~~~e~~~~~~ai~~~k~~~~~~~~ 333 (334)
| + ..+-+. ..+ .- ..-|.-+++-|-+.-.+++|.+.++..-..|-+
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 0 0 000000 000 00 113666667777777778888887777665543
No 218
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.031 Score=54.65 Aligned_cols=65 Identities=25% Similarity=0.416 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
..+.|-.+|+.|+|++|++-|+.|++..--. +-.-||+|.|+...++++.|+++..+-|+.|-.+
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqvsGyq---pllAYniALaHy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQVSGYQ---PLLAYNLALAHYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhhcCCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhc
Confidence 3599999999999999999999999987665 4688999999999999999999999988877543
No 219
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=1.4 Score=42.44 Aligned_cols=68 Identities=22% Similarity=0.173 Sum_probs=55.2
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHh-cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHH
Q 019871 218 DLREGLQLYR----TGKYEVAREKFESVLG-SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRV 289 (334)
Q Consensus 218 ~~nlG~al~~----~g~yeeAl~~fekALe-ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i 289 (334)
.-.++.++.+ .+++.+|.-.|++.-+ ..|+ +......|||+..+|++++|...++.|+..++.+++.+
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T----~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPT----PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCC----hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 3357766643 4679999999999887 5666 57899999999999999999999999999999887643
No 220
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.12 Score=54.14 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
|.++.++|++++.++|+.+++ .+++.+ .-+..-+|-++.++|+|++|+..|+.-++.+-++.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 588899999999999999888 444444 237777888888889999999999998888877665
No 221
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.00 E-value=0.05 Score=39.56 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~ 249 (334)
.+.++..++++|+|++|....+.+|+++|+|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 56899999999999999999999999999983
No 222
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.91 E-value=0.2 Score=50.32 Aligned_cols=69 Identities=19% Similarity=0.170 Sum_probs=47.3
Q ss_pred HHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871 207 KKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (334)
Q Consensus 207 ~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI 279 (334)
+.+...|.++..+ .+|..+++.+.|.+|-..|+.|++..|.. ..|..+|.+|.++|+..+|-+..++++
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~----~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA----SDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh----hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3344444444443 77777777777777777777777777764 467777777777777777777777776
No 223
>PLN03077 Protein ECB2; Provisional
Probab=94.90 E-value=0.44 Score=52.00 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=44.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871 223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 223 ~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp 283 (334)
..|.+.|++++|...|++. .|+ ..+|..+..+|.+.|+.++|++.|++.++.|.
T Consensus 532 ~~y~k~G~~~~A~~~f~~~---~~d----~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH---EKD----VVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc---CCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 6677889999999888886 444 46899999999999999999999998887653
No 224
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=94.89 E-value=0.017 Score=59.56 Aligned_cols=73 Identities=22% Similarity=0.366 Sum_probs=54.1
Q ss_pred eecCCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhHHHHhh
Q 019871 90 EIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQ 166 (334)
Q Consensus 90 ~l~kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V~lkLe 166 (334)
...-|+|+++....++.++|+.|..||.++|+|++.+||.|..+-. .-....+..++....++-.|+++++.-
T Consensus 131 ~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNG----i~v~~~~~~e~q~~l~~~~G~itfkii 203 (542)
T KOG0609|consen 131 NTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNG----ISVANKSPEELQELLRNSRGSITFKII 203 (542)
T ss_pred cCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecC----eecccCCHHHHHHHHHhCCCcEEEEEc
Confidence 3346999999766666899999999999999999999999999732 222234455666666655577766543
No 225
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.74 E-value=0.78 Score=43.71 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC--------ChHHHHHHHHHHHHcCCC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN--------QVKAGLSALEDALLAGYE 284 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG--------~~eeAl~~lekAIelgp~ 284 (334)
.+.++.++|+.++|++|+...++-+.+.|+++....++|-+|.++...= ...+|+..++..|..-|+
T Consensus 74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn 148 (254)
T COG4105 74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN 148 (254)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC
Confidence 4699999999999999999999999999999877789999999976532 356889999999999886
No 226
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.68 E-value=0.12 Score=54.71 Aligned_cols=79 Identities=19% Similarity=0.147 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 200 IQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 200 ~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
.++.+|.+++.+.+++.+.+ .++..+.++++|+.....-.+-++++|.. ...|...|.++..+|++..|+..++.-
T Consensus 93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~---ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ---RASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554443 55555555555555555555555555554 356666666677777777776666555
Q ss_pred HHc
Q 019871 279 LLA 281 (334)
Q Consensus 279 Iel 281 (334)
+..
T Consensus 170 ~~t 172 (700)
T KOG1156|consen 170 EKT 172 (700)
T ss_pred HHh
Confidence 443
No 227
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.63 E-value=0.22 Score=51.90 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=75.6
Q ss_pred hhhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh
Q 019871 193 ISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYR---TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268 (334)
Q Consensus 193 ~~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~---~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~ 268 (334)
.+......++..|.++++..|.....+ |++.++++ .|+--.|+..+..|+++||-. ..+||.++.|+..++++
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~---~kah~~la~aL~el~r~ 461 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI---QKAHFRLARALNELTRY 461 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH---HHHHHHHHHHHHHHhhH
Confidence 344444556788999999889888877 88888776 457778999999999999987 68999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCH
Q 019871 269 KAGLSALEDALLAGYEDF 286 (334)
Q Consensus 269 eeAl~~lekAIelgp~~~ 286 (334)
.+|+++...+.-..|.+.
T Consensus 462 ~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 462 LEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHhhhhHHHHhhcCchhh
Confidence 999999988888888443
No 228
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.26 E-value=0.73 Score=36.85 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=50.5
Q ss_pred HHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 203 QNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 203 ~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
....+.++.+|.+.+. +.++..+...|+|++|++.+-+++..+|++.+ ..+--.+=-++..+|.-+.-...+++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~-~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED-DAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC-CHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc-cHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4556778889998555 69999999999999999999999999998743 23444445556666665544444444
No 229
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=94.25 E-value=0.03 Score=59.30 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=62.1
Q ss_pred cCCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhHHHHhhcccch
Q 019871 92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGK 171 (334)
Q Consensus 92 ~kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V~lkLek~~~a 171 (334)
..|.||+|.++....|-|..|.|..-|+|+. +.+||+++++ +..|++...++...+.+-.|.++.-.++...+
T Consensus 385 s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai------~~~pi~s~~q~~~~~~s~~~~~~~l~~~~~~~ 457 (1051)
T KOG3532|consen 385 SSPIGLVFDKNTNRAVKVCTVEDNSLADKAA-FKPGDVLVAI------NNVPIRSERQATRFLQSTTGDLTVLVERSLDD 457 (1051)
T ss_pred cCceeEEEecCCceEEEEEEecCCChhhHhc-CCCcceEEEe------cCccchhHHHHHHHHHhcccceEEEEeecccc
Confidence 4799999988877899999999999999998 9999999998 46677777777777777777777666665555
Q ss_pred hhh
Q 019871 172 MEQ 174 (334)
Q Consensus 172 ie~ 174 (334)
++.
T Consensus 458 ~d~ 460 (1051)
T KOG3532|consen 458 IDE 460 (1051)
T ss_pred hhh
Confidence 553
No 230
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.02 E-value=0.58 Score=40.16 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---------chHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---------SSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---------~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
++..|.-.++.|-|++|...|.+|++...+.|. .+..|-.++-++..+|+|++++..-++||..
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 346677788999999999999999988655431 1456778899999999999999999999865
No 231
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.81 E-value=0.46 Score=46.86 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
+.+.+...++.|+.+.|...|+-|++++|++ +.++...|...-.-.++-+|-.+|-+|+.++|.+-+
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~---p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTN---PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCC---HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 4477778889999999999999999999999 578999999888888999999999999999998766
No 232
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=93.70 E-value=0.11 Score=39.84 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=35.8
Q ss_pred CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
..|+.|..|.+++.|+++| +++||+|+.+ ..+++.++..+..++..
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~I------ng~~v~~~~d~~~~l~~ 54 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSI------NGTPITTLEDFMEALKP 54 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEE------CCEEcCCHHHHHHHHhc
Confidence 4579999999999999998 9999999998 34556666655555543
No 233
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.68 E-value=2.1 Score=35.90 Aligned_cols=69 Identities=23% Similarity=0.074 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-------------------cchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPE-------------------ESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~-------------------e~~~a~yNlA~ay~~lG~~eeAl~~lekAI 279 (334)
...|......++.+.++..+++++.+-.... ....+...++.++...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3556677788899999999999998854331 012455667777889999999999999999
Q ss_pred HcCCCCHH
Q 019871 280 LAGYEDFK 287 (334)
Q Consensus 280 elgp~~~~ 287 (334)
..+|-+-.
T Consensus 90 ~~dP~~E~ 97 (146)
T PF03704_consen 90 ALDPYDEE 97 (146)
T ss_dssp HHSTT-HH
T ss_pred hcCCCCHH
Confidence 99998543
No 234
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=0.27 Score=52.26 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
.||-+.-+|+..+|..+++.|...+..-|.+.+ .+....+++|||..+.+.|.|++++++|=+.+|.++
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 468899999999999999999999988777632 256788999999999999999999999999998754
No 235
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=1 Score=42.86 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHH-CCChHHHHHHHHHHHHcCC
Q 019871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSK-LNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~-lG~~eeAl~~lekAIelgp 283 (334)
....|-.+.-.|+..+.++|+.+++++|++--+-+. .+.-+..+|-.|-. +.+++.||.+|++|-+.--
T Consensus 73 aat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 344565566667778899999999999888665421 12334556666643 4788888888888876633
No 236
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.47 E-value=2 Score=39.79 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=62.2
Q ss_pred HHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 208 KKEQKERREQDLREGLQLYRTGKYEVAREKFESVL-GSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 208 ~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekAL-eldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
..++.|.-...+.+|+++.++|+|.||...|++++ .+.-++ +..+..+|.+...++++.+|...|++..+.+|.
T Consensus 82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d---~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD---AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC---HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 34456777777899999999999999999999998 455555 568889999999999999999999999998874
No 237
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.43 E-value=0.28 Score=38.72 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
.+..|.-+|...+.++|+..++++++..++.++.-.++-.+..+|+..|++.+.+++.-+=+++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999998887544455556666788999999999887776665
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.16 E-value=0.74 Score=47.36 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=57.2
Q ss_pred hhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 210 EQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEE-SSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 210 el~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e-~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
+..|+.... +..|..+...|+.++|++.|++++....+... ....+|.+|.|+..+.+|++|..++.+.++.+.+
T Consensus 261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence 345665443 48888999999999999999988854433211 1467889999999999999999999999887766
No 239
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.15 E-value=0.54 Score=43.30 Aligned_cols=64 Identities=13% Similarity=0.030 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
++++.+++++|++++|+..++..-+ +.+. +..---+|-++..+|+-++|...|++|++.+++..
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~--~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKE--ESWA--AIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcccc--ccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 4999999999999999998765443 2221 34456689999999999999999999999976533
No 240
>PLN03077 Protein ECB2; Provisional
Probab=93.11 E-value=1.3 Score=48.43 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALe--ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe 280 (334)
..+-.+...+.+.|+.++|++.|++..+ +.|+. ..+..+-.+|.+.|++++|++.|+...+
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~----~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE----VTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc----ccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 3334778888999999999999999886 45764 5777788889999999999999999884
No 241
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.03 E-value=0.76 Score=40.14 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=60.5
Q ss_pred ccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 212 KERREQDLREGLQLYRTG---KYEVAREKFESVLG-SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 212 ~~~~~~~~nlG~al~~~g---~yeeAl~~fekALe-ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.+..+..|+++.++.+.. +..+-|.+++..++ -.|+. ...-.|.+|..++++++|+.|+.+++..|+..|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~--rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER--RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc--chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 455667788888887654 46778999999997 44544 2567899999999999999999999999999999765
No 242
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.97 E-value=0.14 Score=33.30 Aligned_cols=28 Identities=25% Similarity=0.191 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSK 245 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeld 245 (334)
..++|..+...|+|++|+.++++++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4589999999999999999999999763
No 243
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=92.74 E-value=0.18 Score=38.74 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=34.8
Q ss_pred CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (334)
Q Consensus 104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~ 155 (334)
.++++|..|.+++.|+++| ++.||+|+.+. .+++.+...+..++.
T Consensus 23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~In------g~~i~~~~~~~~~l~ 67 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVN------GKPVKSVADLRRALA 67 (90)
T ss_pred CCEEEEEEECCCCHHHHcC-CCcCCEEEEEC------CEECCCHHHHHHHHH
Confidence 4589999999999999998 99999999983 445555555555444
No 244
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=92.62 E-value=0.18 Score=37.95 Aligned_cols=44 Identities=23% Similarity=0.448 Sum_probs=33.9
Q ss_pred ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
.+.|..|.+++.|+++| +++||+|+.+- .+++.++..+.+.+..
T Consensus 13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~in------g~~i~~~~~~~~~l~~ 56 (79)
T cd00989 13 EPVIGEVVPGSPAAKAG-LKAGDRILAIN------GQKIKSWEDLVDAVQE 56 (79)
T ss_pred CcEEEeECCCCHHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHHH
Confidence 58899999999999988 99999999983 4455655555554444
No 245
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.51 E-value=4.9 Score=38.90 Aligned_cols=92 Identities=18% Similarity=0.138 Sum_probs=69.0
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCHHHHhc
Q 019871 213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA-GYEDFKRVRT 291 (334)
Q Consensus 213 ~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel-gp~~~~~i~~ 291 (334)
|......-++.+...+|+|++|....+.||..++++ +..+-|+-.|-..+|...++..-+-.-++. .|+ ..++..
T Consensus 205 ~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d---petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~-h~~vk~ 280 (299)
T KOG3081|consen 205 PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD---PETLANLIVLALHLGKDAEVTERNLSQLKLSHPE-HPFVKH 280 (299)
T ss_pred CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc-chHHHH
Confidence 444444578889999999999999999999999998 579999999999999998887766555544 454 333321
Q ss_pred ChhhHHHhcChHHHHHHHHHHH
Q 019871 292 DPDLENLRASEEFDVLLKRFDE 313 (334)
Q Consensus 292 Dpdl~~Lr~dp~F~~lL~~~~e 313 (334)
+. .++.+|.+++.+|+-
T Consensus 281 ---~~--ekeaeFDrl~~qy~~ 297 (299)
T KOG3081|consen 281 ---LN--EKEAEFDRLVLQYDT 297 (299)
T ss_pred ---HH--HHHHHHHHHHHHhcc
Confidence 11 124589988888763
No 246
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=92.48 E-value=1.9 Score=46.34 Aligned_cols=82 Identities=18% Similarity=0.064 Sum_probs=60.8
Q ss_pred HHHhhccCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 207 KKKEQKERREQDLRE-GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 207 ~~iel~~~~~~~~nl-G~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
.+.+.+|+.++.+-- --..++..+|+.|-..|.+|-...|+- ..|+.-+.....+++.++|+..|++||+.-|..
T Consensus 609 ~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe----Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f 684 (913)
T KOG0495|consen 609 QAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE----RVWMKSANLERYLDNVEEALRLLEEALKSFPDF 684 (913)
T ss_pred HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc----hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch
Confidence 445566776555433 334477778888888888888877773 688888888888999999999999999998887
Q ss_pred HH-HHhcC
Q 019871 286 FK-RVRTD 292 (334)
Q Consensus 286 ~~-~i~~D 292 (334)
.+ |++..
T Consensus 685 ~Kl~lmlG 692 (913)
T KOG0495|consen 685 HKLWLMLG 692 (913)
T ss_pred HHHHHHHh
Confidence 76 55544
No 247
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.33 E-value=0.42 Score=50.49 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhccC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKER--REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 199 e~q~~~y~~~iel~~~--~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
..+..+.+.++.+.|. +-...+++.++.+-|..-+|-..+.++|.++-.. +..+|-+|.+|..+.+++.|+++|+
T Consensus 624 ~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~se---pl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 624 TFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSE---PLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred HHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccC---chHHHhcchhHHHHhhhHHHHHHHH
Confidence 4556677777766653 3335699999999999999999999999998443 6789999999999999999999999
Q ss_pred HHHHcCCCCHH
Q 019871 277 DALLAGYEDFK 287 (334)
Q Consensus 277 kAIelgp~~~~ 287 (334)
.|++++|++..
T Consensus 701 ~a~~~~~~~~~ 711 (886)
T KOG4507|consen 701 QALKLTTKCPE 711 (886)
T ss_pred HHHhcCCCChh
Confidence 99999997654
No 248
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.27 E-value=2.9 Score=39.91 Aligned_cols=102 Identities=17% Similarity=0.090 Sum_probs=70.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH----HHhcCh
Q 019871 222 GLQLYRTGKYEVAREKFESVLGSKPTPEE----SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK----RVRTDP 293 (334)
Q Consensus 222 G~al~~~g~yeeAl~~fekALeldP~~~e----~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~----~i~~Dp 293 (334)
+.-..++++|.+||+.|+++....-++.- ...-++..|.|+....+.=.+-..+++=.+++|.... ..++|-
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L 240 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDL 240 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence 33346789999999999999977666520 0134567788998888888888999999999996322 222221
Q ss_pred hhHHH--hcChHHHHHHHHHHHhhhchhHHHHH
Q 019871 294 DLENL--RASEEFDVLLKRFDESFINENAINAI 324 (334)
Q Consensus 294 dl~~L--r~dp~F~~lL~~~~e~~~~~~ai~~~ 324 (334)
++.+ .+...|.+.+..|+..-.+++|--.|
T Consensus 241 -~~aieE~d~e~fte~vkefDsisrLD~W~tti 272 (288)
T KOG1586|consen 241 -LDAIEEQDIEKFTEVVKEFDSISRLDQWKTTI 272 (288)
T ss_pred -HHHHhhhhHHHHHHHHHhhhccchHHHHHHHH
Confidence 1111 23357888999998888888886443
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.00 E-value=1.5 Score=45.57 Aligned_cols=59 Identities=15% Similarity=0.109 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
..+++++-++|+.+||++.|...++..|... ....++|+-.|+..++.+.++...+.|=
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~-~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLD-NLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccc-hhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4899999999999999999999998888632 2568999999999999999998888873
No 250
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.53 E-value=0.53 Score=49.77 Aligned_cols=97 Identities=16% Similarity=0.094 Sum_probs=79.3
Q ss_pred hhchhhhhhhHHHHHHHHHHHHHhhccCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Q 019871 187 ERNSGVISNRVREIQMQNYMKKKEQKERRE---QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (334)
Q Consensus 187 ~~n~g~~~~~l~e~q~~~y~~~iel~~~~~---~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~ 263 (334)
||..|.++. +..+|..++-+.+... ..+.+|.+++++|...+|--.+..|++-.|... .-+|-++.+|+
T Consensus 223 WR~~G~~~~-----A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t---~n~y~l~~i~a 294 (886)
T KOG4507|consen 223 WRIKGEPYQ-----AVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFT---SNYYTLGNIYA 294 (886)
T ss_pred HHHcCChhh-----hhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccc---ccceeHHHHHH
Confidence 666676664 6678888776666533 345999999999999999999999999888874 35999999999
Q ss_pred HCCChHHHHHHHHHHHHcCCCCHHHHhc
Q 019871 264 KLNQVKAGLSALEDALLAGYEDFKRVRT 291 (334)
Q Consensus 264 ~lG~~eeAl~~lekAIelgp~~~~~i~~ 291 (334)
+++.+...+.+|..|.+.+|..-..+..
T Consensus 295 ml~~~N~S~~~ydha~k~~p~f~q~~~q 322 (886)
T KOG4507|consen 295 MLGEYNHSVLCYDHALQARPGFEQAIKQ 322 (886)
T ss_pred HHhhhhhhhhhhhhhhccCcchhHHHHH
Confidence 9999999999999999999985544444
No 251
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.39 E-value=0.67 Score=44.50 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=58.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
++=.++.+.++++.|+.+-++.+.++|+++ .-+--+|.+|.++|.+.-|+.+++..++.-|++..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp---~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDP---YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCCh---hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 555678899999999999999999999994 56889999999999999999999999999998655
No 252
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.07 E-value=1.8 Score=39.98 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=49.4
Q ss_pred HHHHHHHHcCC-------HHHHHHHHHHHHhcCCC--CC-cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 220 REGLQLYRTGK-------YEVAREKFESVLGSKPT--PE-ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 220 nlG~al~~~g~-------yeeAl~~fekALeldP~--~~-e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
.++-.+-.+|+ +..|++.|++|++.... .. ......|-+|..+.++|++++|+.+|.+.|...-.
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 44444444554 77889999999966543 21 12578999999999999999999999999988554
No 253
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.77 E-value=1.1 Score=39.98 Aligned_cols=64 Identities=13% Similarity=-0.033 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
...+|.-+++.|++++|+++|.++.+..-........+.++-.+....+++.....++.+|-.+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3488999999999999999999988765544333567888888888999999999999998554
No 254
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.71 E-value=1.2 Score=44.81 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
+-+.++...|..-.|++||+.|.+++..+|+. ...-.++|.||.++.-++-+.+.+.-=+..-|+
T Consensus 153 dqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey---~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 153 DQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY---IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh---hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 34577888888889999999999999999997 456778999999999999988888777666664
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.65 E-value=1.2 Score=45.91 Aligned_cols=62 Identities=16% Similarity=0.114 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh-------HHHHHHHHHHHHc
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV-------KAGLSALEDALLA 281 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~-------eeAl~~lekAIel 281 (334)
.|.+|..+.-+.+|++|..+|.+..+.+.-.. +...|-.||||..+|+. ++|.+.++++-.+
T Consensus 308 ~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk--a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 308 YFELAWCHMFQHDWEEAAEYFLRLLKESKWSK--AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHHhccccHH--HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 35999999999999999999999999766542 56778999999999999 7777777777444
No 256
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=90.47 E-value=0.43 Score=48.18 Aligned_cols=55 Identities=22% Similarity=0.459 Sum_probs=40.8
Q ss_pred cceeEeecC-----------CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 95 YGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 95 lgl~~~~~~-----------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
||+.+..-. ..+++|..|.+++.|+++| +++||+|+.+- .+++.+...+..++..
T Consensus 236 lGi~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vn------g~~i~~~~~~~~~l~~ 301 (428)
T TIGR02037 236 LGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAG-LKAGDVILSVN------GKPISSFADLRRAIGT 301 (428)
T ss_pred CceEeecCCHHHHHHcCCCCCCceEEEEccCCCChHHcC-CCCCCEEEEEC------CEEcCCHHHHHHHHHh
Confidence 788875432 3589999999999999999 99999999983 3455555555554443
No 257
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=90.37 E-value=0.22 Score=52.43 Aligned_cols=48 Identities=31% Similarity=0.650 Sum_probs=42.1
Q ss_pred EEeec--CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccc
Q 019871 88 EVEIE--QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (334)
Q Consensus 88 ~v~l~--kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~ 136 (334)
.|... +-.||.++-+||=||||..|..|+.|++.| ++.||.|+.|-.+
T Consensus 410 ~VrF~KGdSvGLRLAGGNDVGIFVaGvqegspA~~eG-lqEGDQIL~VN~v 459 (1027)
T KOG3580|consen 410 MVRFKKGDSVGLRLAGGNDVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTV 459 (1027)
T ss_pred eEEeecCCeeeeEeccCCceeEEEeecccCCchhhcc-ccccceeEEeccc
Confidence 34444 789999999999999999999999999999 9999999998544
No 258
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=90.11 E-value=2.2 Score=45.81 Aligned_cols=84 Identities=15% Similarity=-0.018 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871 201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI 279 (334)
+.+-..++++..|.....| .+|.++.++++.+.|-..|...++.-|.. ...|.-++..--+.|+.-.|-..|+++.
T Consensus 670 A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~---ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS---IPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC---chHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3344456777788877776 99999999999999999999999999998 5799999999999999999999999999
Q ss_pred HcCCCCHH
Q 019871 280 LAGYEDFK 287 (334)
Q Consensus 280 elgp~~~~ 287 (334)
-.+|.+..
T Consensus 747 lkNPk~~~ 754 (913)
T KOG0495|consen 747 LKNPKNAL 754 (913)
T ss_pred hcCCCcch
Confidence 99998766
No 259
>PRK11186 carboxy-terminal protease; Provisional
Probab=90.05 E-value=0.35 Score=52.02 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=33.6
Q ss_pred cceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 95 lgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.|+.+.. .+|++.|..|.|||.|+|++.|++||+|++|-
T Consensus 246 IGa~l~~-~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn 284 (667)
T PRK11186 246 IGAVLQM-DDDYTVINSLVAGGPAAKSKKLSVGDKIVGVG 284 (667)
T ss_pred EEEEEEE-eCCeEEEEEccCCChHHHhCCCCCCCEEEEEC
Confidence 4778855 56789999999999999995599999999994
No 260
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=90.01 E-value=0.6 Score=35.49 Aligned_cols=43 Identities=23% Similarity=0.399 Sum_probs=33.0
Q ss_pred ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
||.|..|.+++.|+. + +++||+|+.+ ..+++.+...+..++..
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~I------ng~~v~~~~~~~~~l~~ 51 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAV------DGKPFKEAEELIDYIQS 51 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEE------CCEECCCHHHHHHHHHh
Confidence 599999999999885 6 9999999998 34556666556665543
No 261
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.82 E-value=0.72 Score=46.38 Aligned_cols=64 Identities=14% Similarity=0.083 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPE-------ESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~-------e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
..+|..+-+..+|+.|+-...+|.++-.... .+..++|.+|.+|.++|+.-.|.+++++|.++.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 3899999999999999999999988754432 235789999999999999999999999997663
No 262
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=89.79 E-value=0.49 Score=52.30 Aligned_cols=50 Identities=32% Similarity=0.645 Sum_probs=41.0
Q ss_pred ceEEEeecCCcceeE----eecC---CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIEQPYGLKF----AKGR---DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~kPlgl~~----~~~~---~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+-..|+|+|--||-+ +++. +-||||..|++||.||..|.+.+||.++.|-
T Consensus 933 ei~~vtL~KnnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVd 989 (1629)
T KOG1892|consen 933 EIITVTLKKNNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVD 989 (1629)
T ss_pred ceEEEEEeccCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeec
Confidence 568899998877433 4442 2299999999999999999999999999983
No 263
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=89.67 E-value=0.32 Score=47.58 Aligned_cols=38 Identities=29% Similarity=0.515 Sum_probs=33.6
Q ss_pred cceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 95 lgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+|+.+.. .++++.|..|.+++.|+++| +++||+|+.+-
T Consensus 53 lG~~~~~-~~~~~~V~~V~~~spA~~aG-L~~GD~I~~In 90 (334)
T TIGR00225 53 IGIQVGM-DDGEIVIVSPFEGSPAEKAG-IKPGDKIIKIN 90 (334)
T ss_pred EEEEEEE-ECCEEEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence 6788855 46799999999999999999 99999999983
No 264
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.64 E-value=4.6 Score=39.24 Aligned_cols=100 Identities=14% Similarity=0.038 Sum_probs=74.6
Q ss_pred hhhHHHHH--HHHHHHHHhhcc-CHHHHH-HHHHHHHHcCCHHHHHHHHHHHHh----cCC-CCCcchHHHHHHHHHHHH
Q 019871 194 SNRVREIQ--MQNYMKKKEQKE-RREQDL-REGLQLYRTGKYEVAREKFESVLG----SKP-TPEESSVASYNVACCYSK 264 (334)
Q Consensus 194 ~~~l~e~q--~~~y~~~iel~~-~~~~~~-nlG~al~~~g~yeeAl~~fekALe----ldP-~~~e~~~a~yNlA~ay~~ 264 (334)
..+++|.+ +..|.+.++.+| .+.... .+|...++.|+.+.|-..|+++=+ ++- ++ .-..+-|.|.+|..
T Consensus 187 llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~--~~~V~~n~a~i~lg 264 (366)
T KOG2796|consen 187 LLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQG--KIMVLMNSAFLHLG 264 (366)
T ss_pred HhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccch--hHHHHhhhhhheec
Confidence 34556655 567778888774 444444 999999999999999999995443 332 12 24788999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871 265 LNQVKAGLSALEDALLAGYEDFKRVRTDPDLE 296 (334)
Q Consensus 265 lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~ 296 (334)
.+++-+|...+.+++..++.+...+ +++++-
T Consensus 265 ~nn~a~a~r~~~~i~~~D~~~~~a~-NnKALc 295 (366)
T KOG2796|consen 265 QNNFAEAHRFFTEILRMDPRNAVAN-NNKALC 295 (366)
T ss_pred ccchHHHHHHHhhccccCCCchhhh-chHHHH
Confidence 9999999999999999999976543 444443
No 265
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=89.44 E-value=0.54 Score=45.24 Aligned_cols=59 Identities=32% Similarity=0.643 Sum_probs=42.6
Q ss_pred cCCcceeEeec------CCC-----ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHH
Q 019871 92 EQPYGLKFAKG------RDG-----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTI 154 (334)
Q Consensus 92 ~kPlgl~~~~~------~~g-----~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai 154 (334)
+||||.-+-.+ ..| ||||..++|||=|+-+|.+.|.|.|+.|- |.| +-...+.+|-.++
T Consensus 170 ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVN---GIE-VaGKTLDQVTDMM 239 (358)
T KOG3606|consen 170 EKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVN---GIE-VAGKTLDQVTDMM 239 (358)
T ss_pred CCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEc---CEE-eccccHHHHHHHH
Confidence 59999777322 123 89999999999999999999999999984 322 2234555555443
No 266
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.23 E-value=0.54 Score=28.68 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHH
Q 019871 253 VASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 253 ~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+++++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356777777777777777777665
No 267
>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]
Probab=89.03 E-value=0.4 Score=39.67 Aligned_cols=30 Identities=30% Similarity=0.678 Sum_probs=28.2
Q ss_pred CCCceEEEeeCCCCccccccccccCcEeeee
Q 019871 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 103 ~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
.|-||||..|..|+.|+.+| +..+|+|.-+
T Consensus 57 tD~GiYvT~V~eGsPA~~AG-LrihDKIlQv 86 (124)
T KOG3553|consen 57 TDKGIYVTRVSEGSPAEIAG-LRIHDKILQV 86 (124)
T ss_pred CCccEEEEEeccCChhhhhc-ceecceEEEe
Confidence 46799999999999999999 9999999998
No 268
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.52 E-value=2.6 Score=41.16 Aligned_cols=75 Identities=23% Similarity=0.305 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
+.|+..+.+++-.. ..+..+..+..+.+.|++.+|...|..++..+|++ ..+-..+|.||...|+.++|...|..
T Consensus 119 esqlr~~ld~~~~~-~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~---~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 119 ESQLRQFLDKVLPA-EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN---SEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHHHHHhcCh-HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc---chHHHHHHHHHHHcCChHHHHHHHHh
Confidence 33444444443211 23445678888899999999999999999999998 46888889999999998776655543
No 269
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=88.28 E-value=0.57 Score=48.71 Aligned_cols=54 Identities=30% Similarity=0.505 Sum_probs=42.1
Q ss_pred hhhhccceEEEeec---CC---cceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 79 EQEEKYEEYEVEIE---QP---YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 79 ~~~~~~~~~~v~l~---kP---lgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+..-.+.|-+++. .| ||+++. .+.|...|..|.+||.|.++| |.+||+|+++-
T Consensus 431 ~l~~~l~~~gL~~~~~~~~~~~LGl~v~-~~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~ 490 (558)
T COG3975 431 PLNPLLERFGLTFTPKPREAYYLGLKVK-SEGGHEKITFVFPGGPAYKAG-LSPGDKIVAIN 490 (558)
T ss_pred ChhhhhhhcceEEEecCCCCcccceEec-ccCCeeEEEecCCCChhHhcc-CCCccEEEEEc
Confidence 44555555665554 33 788883 367899999999999999999 99999999984
No 270
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.06 E-value=1.3 Score=29.55 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 019871 219 LREGLQLYRTGKYEVAREK--FESVLGSKPT 247 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~--fekALeldP~ 247 (334)
+.+|..++.+|+|++|++. |.-+..++|.
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455566666666666666 3355555554
No 271
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.86 E-value=1.5 Score=29.21 Aligned_cols=33 Identities=6% Similarity=-0.033 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHCCChHHHHHH--HHHHHHcCCCC
Q 019871 253 VASYNVACCYSKLNQVKAGLSA--LEDALLAGYED 285 (334)
Q Consensus 253 ~a~yNlA~ay~~lG~~eeAl~~--lekAIelgp~~ 285 (334)
..||.+|+++...|++++|++. |+-+..++++|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4689999999999999999999 55887777754
No 272
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.26 E-value=1.4 Score=47.83 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~---e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
..+|.++...|++++|+..|+++++...... +...++..+|.+|..+|+.++|...+.+|+++...
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 4788899999999999999999998643221 12467889999999999999999999999998654
No 273
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=87.03 E-value=0.64 Score=47.09 Aligned_cols=49 Identities=20% Similarity=0.382 Sum_probs=38.8
Q ss_pred ceEEEeecC-C--cceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIEQ-P--YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~k-P--lgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+..+..- . +|+.+...+++++.|.+..+++-|+|+| |++||.|+.|-
T Consensus 89 ~~~~~~~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~Id 140 (406)
T COG0793 89 AEFRTDTSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKID 140 (406)
T ss_pred HHhhhhccccccceeEEEEEecCCCcEEEecCCCChHHHcC-CCCCCEEEEEC
Confidence 345555552 2 3477766555999999999999999999 99999999984
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.91 E-value=2.6 Score=38.96 Aligned_cols=94 Identities=13% Similarity=0.156 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-HHhcChhhHH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-RVRTDPDLEN 297 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-~i~~Dpdl~~ 297 (334)
+.++-.+++.|++++|+..+..++..--+..-.+.+-.++|.+...+|++|+|+..|+.--+-++.... .++.|-
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDi---- 168 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDI---- 168 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhH----
Confidence 477888999999999999999999754433223467789999999999999999999877666555433 334432
Q ss_pred HhcChHHHHHHHHHHHhhh
Q 019871 298 LRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 298 Lr~dp~F~~lL~~~~e~~~ 316 (334)
|....+=+++...|.+.+.
T Consensus 169 ll~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 169 LLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHcCchHHHHHHHHHHHH
Confidence 2222344556666666553
No 275
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=86.76 E-value=1 Score=45.48 Aligned_cols=44 Identities=20% Similarity=0.405 Sum_probs=35.4
Q ss_pred CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (334)
Q Consensus 105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~ 155 (334)
.+++|..|.+++.|+++| +++||+|+.+- .+++.+......++.
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~In------g~~V~s~~d~~~~l~ 405 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVN------QQPVSSVAELRKVLD 405 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEEC------CEEcCCHHHHHHHHH
Confidence 589999999999999999 99999999983 455566555555554
No 276
>PRK10139 serine endoprotease; Provisional
Probab=86.60 E-value=1.1 Score=45.99 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=35.0
Q ss_pred CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
..|++|..|.+++.|+++| +++||+|+.+- ..++.++..+...+..
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~In------G~~V~s~~dl~~~l~~ 334 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLN------GKPLNSFAELRSRIAT 334 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEEC------CEECCCHHHHHHHHHh
Confidence 4589999999999999999 99999999983 3344555555554543
No 277
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=86.30 E-value=1.5 Score=41.66 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871 199 EIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~ 248 (334)
+.+..-|.+++++.|+... ++.+|.-..+.|+++.|.+.|++.++++|++
T Consensus 12 ~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 12 EAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4456788899999988644 5699999999999999999999999999997
No 278
>PRK10942 serine endoprotease; Provisional
Probab=86.06 E-value=1.2 Score=45.84 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=34.3
Q ss_pred CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (334)
Q Consensus 104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~ 155 (334)
..|++|..|.+++.|+++| ++.||+|+.+- ..++.++..+..++.
T Consensus 310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~In------G~~V~s~~dl~~~l~ 354 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLN------GKPISSFAALRAQVG 354 (473)
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHH
Confidence 4589999999999999999 99999999983 234455554444443
No 279
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=85.83 E-value=1 Score=44.61 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=34.5
Q ss_pred CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (334)
Q Consensus 105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~ 155 (334)
.+++|..|.+++.|+++| +++||+|+.+- .+++.+...+..++.
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~In------g~~V~s~~dl~~~l~ 321 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYD------GKDVIGAEELMDRIA 321 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEEC------CEEcCCHHHHHHHHH
Confidence 589999999999999999 99999999982 345555555555444
No 280
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=85.64 E-value=0.86 Score=45.71 Aligned_cols=28 Identities=43% Similarity=0.709 Sum_probs=26.4
Q ss_pred ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
++.|..|.+++.|+++| |++||+|+.|-
T Consensus 103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~In 130 (389)
T PLN00049 103 GLVVVAPAPGGPAARAG-IRPGDVILAID 130 (389)
T ss_pred cEEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence 79999999999999999 99999999983
No 281
>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]
Probab=85.63 E-value=1.2 Score=39.55 Aligned_cols=49 Identities=37% Similarity=0.663 Sum_probs=37.9
Q ss_pred EEEeecCC-cceeEee--c--CCCceEEEeeCCCCccccccccccCcEeeeecc
Q 019871 87 YEVEIEQP-YGLKFAK--G--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSA 135 (334)
Q Consensus 87 ~~v~l~kP-lgl~~~~--~--~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa 135 (334)
-.|+|+|- -||-|.- + -+--|||..|-|||.||+-|.++-||.++.|-.
T Consensus 92 rvvelpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvng 145 (207)
T KOG3550|consen 92 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 145 (207)
T ss_pred ceeecCccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecc
Confidence 57888853 4555522 2 233799999999999999999999999999843
No 282
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=85.35 E-value=0.45 Score=47.27 Aligned_cols=66 Identities=17% Similarity=0.092 Sum_probs=60.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR 288 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~ 288 (334)
+.+.+..+.+.|..|+.....+++.++.. ..+||-+++.|..+.++++|+++++.|....|++..+
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~---tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSK---TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhh---CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 78888999999999999999999988876 5799999999999999999999999999999997653
No 283
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.33 E-value=1.8 Score=40.06 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 234 AREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 234 Al~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
|..+|.+|+.+.|.+ ...|+++|..+...|+.=+|+-+|-|++-.
T Consensus 1 A~~~Y~~A~~l~P~~---G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN---GNPYNQLAVLASYQGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH-TTB---SHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCC---CCcccchhhhhccccchHHHHHHHHHHHhc
Confidence 556666666666666 356666666666666666666666666543
No 284
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=85.15 E-value=3 Score=42.73 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
.+..+|+++++.+-|+..-.+.|-++|-+ ..-|...|.|+..+.+|.+|-...--|
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~---frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSY---FRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcch---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444 233444444444444444444444333
No 285
>PRK04841 transcriptional regulator MalT; Provisional
Probab=85.02 E-value=3 Score=45.40 Aligned_cols=62 Identities=15% Similarity=0.024 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc--chHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEE--SSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e--~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
.+|..+...|++++|...++++++..|.... ...++.++|.++...|++++|...+++|+..
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~ 520 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQM 520 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6677888899999999999999886554321 1346678888888899999999999988875
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.00 E-value=22 Score=31.70 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=36.5
Q ss_pred hccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh
Q 019871 211 QKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV 268 (334)
Q Consensus 211 l~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~ 268 (334)
+.|+..+. .-.|..+...|+|.+|+..++.+.+..|.. +.+---+|+|+..+|+.
T Consensus 39 LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~---p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 39 LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF---PYAKALLALCLYALGDP 94 (160)
T ss_pred hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC---hHHHHHHHHHHHHcCCh
Confidence 45655443 467777777777777777777777766666 34555567777766664
No 287
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.72 E-value=3.8 Score=40.46 Aligned_cols=64 Identities=20% Similarity=0.103 Sum_probs=42.2
Q ss_pred hccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 211 QKER-REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 211 l~~~-~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
..|+ .+..-.+|.+||...+|.+|-.||++.-.+.|+.. ..-+.-|-.+.+.+.+.+|+..+..
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~---qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE---QYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH---HHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4453 33344788888888888888888888888888752 2223335566677777777766544
No 288
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.47 E-value=19 Score=35.19 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=35.8
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 237 KFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 237 ~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
.+++.+..||++ ..+-+.+|..|...|+.++|++.|-.-+..+-.
T Consensus 224 ~l~~~~aadPdd---~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 224 DLQRRLAADPDD---VEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 345566678887 568899999999999999999999887777544
No 289
>PRK10898 serine endoprotease; Provisional
Probab=84.19 E-value=1.9 Score=42.71 Aligned_cols=28 Identities=32% Similarity=0.687 Sum_probs=26.9
Q ss_pred CceEEEeeCCCCccccccccccCcEeeee
Q 019871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
.|++|..|.+++.|+++| +++||+|+.+
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~I 306 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISV 306 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEE
Confidence 699999999999999999 9999999998
No 290
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=83.23 E-value=21 Score=41.69 Aligned_cols=97 Identities=15% Similarity=-0.001 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC--CHHHHhcChhhHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE--DFKRVRTDPDLEN 297 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~--~~~~i~~Dpdl~~ 297 (334)
.+.-.|.+-+++++|.+.|++.++..-+- ...|...|..+...++-++|...|++|++.=|. ..+.+.+-..|+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~---~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQT---RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcch---hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 78888999999999999999999877654 578999999999999999999999999999887 2223333222222
Q ss_pred HhcCh-----HHHHHHHHHHHhhhchh
Q 019871 298 LRASE-----EFDVLLKRFDESFINEN 319 (334)
Q Consensus 298 Lr~dp-----~F~~lL~~~~e~~~~~~ 319 (334)
=..|+ -|..+|..|-+....++
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~ 1638 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWS 1638 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHH
Confidence 22221 26666666644444333
No 291
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=83.18 E-value=19 Score=34.33 Aligned_cols=106 Identities=20% Similarity=0.193 Sum_probs=61.9
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH--HHH-hcChhh
Q 019871 220 REGLQLYR-TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF--KRV-RTDPDL 295 (334)
Q Consensus 220 nlG~al~~-~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~--~~i-~~Dpdl 295 (334)
..|..-+. .++.+-|...|+.+++..|.+ ...|..=...+..+|+.+.|-..|++|+..=+... +.+ .+=-+|
T Consensus 40 ~~A~~E~~~~~d~~~A~~Ife~glk~f~~~---~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f 116 (280)
T PF05843_consen 40 AYALMEYYCNKDPKRARKIFERGLKKFPSD---PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEF 116 (280)
T ss_dssp HHHHHHHHTCS-HHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 45555456 566666999999999999988 45666666777889999999999999988755533 111 111112
Q ss_pred HHHhc-ChHHHHHHHHHHHhhhchhHHHHHHHhh
Q 019871 296 ENLRA-SEEFDVLLKRFDESFINENAINAIKSLF 328 (334)
Q Consensus 296 ~~Lr~-dp~F~~lL~~~~e~~~~~~ai~~~k~~~ 328 (334)
+.-.. ......+.+++.+.+-.++-+..+.+-+
T Consensus 117 E~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 117 ESKYGDLESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 21121 1233444455555555555555554433
No 292
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=82.49 E-value=11 Score=38.18 Aligned_cols=68 Identities=19% Similarity=0.061 Sum_probs=51.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871 226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE 296 (334)
Q Consensus 226 ~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~ 296 (334)
.+-+++..=++..++.++..|++ +..++-+|..|.+.+.|.+|-.+|+.||+..|+...+.+---.|+
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~---p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~ 372 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPED---PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD 372 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 34556666666666666666776 579999999999999999999999999999998666443333333
No 293
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=82.33 E-value=2.1 Score=46.15 Aligned_cols=55 Identities=25% Similarity=0.504 Sum_probs=44.1
Q ss_pred hhhhccceEEEeec---CCcceeEeecCCC--ceEEEeeCCCCccccccccccCcEeeee
Q 019871 79 EQEEKYEEYEVEIE---QPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 79 ~~~~~~~~~~v~l~---kPlgl~~~~~~~g--~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
.-.++...|.|+|+ |=.|..+--++.+ ..||-.+.+.|-|.|.|.+.|||.|+.+
T Consensus 892 r~~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eI 951 (984)
T KOG3209|consen 892 RMSQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEI 951 (984)
T ss_pred cccccCCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCceeecceEEEe
Confidence 34566788999999 4555666333333 8999999999999999999999999997
No 294
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=82.16 E-value=36 Score=34.35 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=52.2
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH---------CCChHHHHHHHHHHHHcCCCC
Q 019871 218 DLREGLQLYR---TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK---------LNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 218 ~~nlG~al~~---~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~---------lG~~eeAl~~lekAIelgp~~ 285 (334)
-+..|.++-+ .|+.++|+..+..++..+.... +..+.-.|.+|-. ....++|+.+|.++.+++|+.
T Consensus 182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~--~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPD--PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 3589999999 9999999999999765443331 5677777777642 235899999999999999875
Q ss_pred HH
Q 019871 286 FK 287 (334)
Q Consensus 286 ~~ 287 (334)
+.
T Consensus 260 Y~ 261 (374)
T PF13281_consen 260 YS 261 (374)
T ss_pred cc
Confidence 53
No 295
>PRK10139 serine endoprotease; Provisional
Probab=81.70 E-value=0.65 Score=47.65 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=35.3
Q ss_pred CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
.+++|..|.+++.|+++| +++||+|+.+- .+++.++.....++..
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~In------g~~v~~~~~~~~~l~~ 434 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVN------RDRVNSIAEMRKVLAA 434 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEEC------CEEcCCHHHHHHHHHh
Confidence 479999999999999999 99999999983 3455555555555544
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.39 E-value=9.3 Score=36.27 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=46.6
Q ss_pred HHcCCHHHHHHHHHHHHhcC----CCCC-cchHHHHHHHHHHHHCC-ChHHHHHHHHHHHHc
Q 019871 226 YRTGKYEVAREKFESVLGSK----PTPE-ESSVASYNVACCYSKLN-QVKAGLSALEDALLA 281 (334)
Q Consensus 226 ~~~g~yeeAl~~fekALeld----P~~~-e~~~a~yNlA~ay~~lG-~~eeAl~~lekAIel 281 (334)
-+.|+++-|...|.|+=.+. |+.. +-+..+||.|......+ ++++|+.++++|+++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 46899999999999987654 3321 12578999999999999 999999999999988
No 297
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.32 E-value=1.9 Score=44.96 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh---------cCCC--C----CcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 220 REGLQLYRTGKYEVAREKFESVLG---------SKPT--P----EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALe---------ldP~--~----~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
|+|-++|++|.|.-++..|.+|+. +.|. . .......||.|..|...|+.-+|.++|.+|+..--.
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 999999999999999999999996 1121 1 012468999999999999999999999999876444
Q ss_pred CHH
Q 019871 285 DFK 287 (334)
Q Consensus 285 ~~~ 287 (334)
++.
T Consensus 368 nPr 370 (696)
T KOG2471|consen 368 NPR 370 (696)
T ss_pred CcH
Confidence 443
No 298
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=81.29 E-value=58 Score=32.89 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHHHH---CCChHHHHHHHHHHHHcCCCCHHHHhcC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP--EESSVASYNVACCYSK---LNQVKAGLSALEDALLAGYEDFKRVRTD 292 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~--~e~~~a~yNlA~ay~~---lG~~eeAl~~lekAIelgp~~~~~i~~D 292 (334)
..++=..|-...+|+.-++..+..-.+ |+. +......+..|.++-+ .|+.++|+..+..++..... .+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~-p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~------~~ 216 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEAL-PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN------PD 216 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhcc-CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC------CC
Confidence 348888888999999999988876655 221 1124678899999999 99999999999997665432 22
Q ss_pred hhhHHHhcChHHHHHHHH--HHHhhhchhHHHHHHHhhc
Q 019871 293 PDLENLRASEEFDVLLKR--FDESFINENAINAIKSLFG 329 (334)
Q Consensus 293 pdl~~Lr~dp~F~~lL~~--~~e~~~~~~ai~~~k~~~~ 329 (334)
|+.-.|.. --|+++... +...-..++||++|++.|.
T Consensus 217 ~d~~gL~G-RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 217 PDTLGLLG-RIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred hHHHHHHH-HHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 33323321 122222221 2222236677777777665
No 299
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=81.08 E-value=2.8 Score=42.84 Aligned_cols=46 Identities=20% Similarity=0.437 Sum_probs=36.4
Q ss_pred ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhh
Q 019871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV 158 (334)
Q Consensus 106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~ 158 (334)
++.|..|.+++.|+++| +++||+|+.+ ..+++.+...+...+..+.
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~I------ng~~V~s~~dl~~~l~~~~ 267 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKV------DGQPLTQWQTFVTLVRDNP 267 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEE------CCEEcCCHHHHHHHHHhCC
Confidence 58999999999999999 9999999998 2456666666666665543
No 300
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=80.14 E-value=1.1 Score=48.04 Aligned_cols=39 Identities=28% Similarity=0.735 Sum_probs=33.0
Q ss_pred CcceeEeec-CCC-ceEEEeeCCCCccccccccccCcEeeee
Q 019871 94 PYGLKFAKG-RDG-GTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 94 Plgl~~~~~-~~g-~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
|+-..+--+ .+| +|||++|.||+.|++.| ++-||.+..|
T Consensus 549 pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEV 589 (1283)
T KOG3542|consen 549 PLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEV 589 (1283)
T ss_pred CceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhc
Confidence 676777444 566 99999999999999999 9999999875
No 301
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.61 E-value=4.6 Score=40.49 Aligned_cols=56 Identities=18% Similarity=0.097 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
-.+..+.+.|-|++|.+.-++++++||.+ ..+...+|-++-..|++.++++...+.
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D---~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFD---CWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcc---hHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 45667789999999999999999999998 456666666666667777777666554
No 302
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=79.54 E-value=3.3 Score=28.05 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 254 ASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 254 a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
.|--+|-+-...++|++|+.+|++||++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555566666666666666666666655
No 303
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.37 E-value=2.8 Score=25.38 Aligned_cols=23 Identities=17% Similarity=0.145 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFES 240 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fek 240 (334)
.+.+|.++...|++++|...+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhC
Confidence 46899999999999999998763
No 304
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.14 E-value=6.6 Score=38.04 Aligned_cols=78 Identities=8% Similarity=-0.017 Sum_probs=41.1
Q ss_pred HHHhhccCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChH-HHHHHHHHHHHcCC
Q 019871 207 KKKEQKERREQDL--REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVK-AGLSALEDALLAGY 283 (334)
Q Consensus 207 ~~iel~~~~~~~~--nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~e-eAl~~lekAIelgp 283 (334)
..|.++|-...-+ ..-..-.-+.+..+-++.+++.++-+|.+ ...|..+-.....+|++. .-++.++++|..+-
T Consensus 68 d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN---YQvWHHRr~ive~l~d~s~rELef~~~~l~~Da 144 (318)
T KOG0530|consen 68 DAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN---YQVWHHRRVIVELLGDPSFRELEFTKLMLDDDA 144 (318)
T ss_pred HHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc---hhHHHHHHHHHHHhcCcccchHHHHHHHHhccc
Confidence 3445555443332 22222233445555566666666666665 445666666666666555 55666666666555
Q ss_pred CCHH
Q 019871 284 EDFK 287 (334)
Q Consensus 284 ~~~~ 287 (334)
.++.
T Consensus 145 KNYH 148 (318)
T KOG0530|consen 145 KNYH 148 (318)
T ss_pred cchh
Confidence 5444
No 305
>PRK10942 serine endoprotease; Provisional
Probab=78.03 E-value=0.99 Score=46.56 Aligned_cols=45 Identities=20% Similarity=0.429 Sum_probs=34.8
Q ss_pred CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
.++.|..|.+++.|+++| +++||+|+.+- .+++.++..+..++..
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VN------g~~V~s~~dl~~~l~~ 452 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGAN------QQPVKNIAELRKILDS 452 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEEC------CEEcCCHHHHHHHHHh
Confidence 479999999999999998 99999999983 3455555555554444
No 306
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=77.91 E-value=3 Score=28.24 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSK 245 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeld 245 (334)
..+|.+-.+.++|++|+..|.++|++.
T Consensus 5 ~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 5 DLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 378999999999999999999999874
No 307
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=77.79 E-value=83 Score=37.08 Aligned_cols=151 Identities=15% Similarity=0.039 Sum_probs=88.1
Q ss_pred hhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhHHH-HHHH-HHHHHHhhccC--HHHHH-HHHHHHHHcCCH
Q 019871 159 GPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRVRE-IQMQ-NYMKKKEQKER--REQDL-REGLQLYRTGKY 231 (334)
Q Consensus 159 G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l~e-~q~~-~y~~~iel~~~--~~~~~-nlG~al~~~g~y 231 (334)
-.+|.+-++...|.+....+..|- .-+.|.--+..+.+.-+ .+.+ --.++++--|. +-+.+ .-+..-|+.|+-
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 445666666666666433333321 01123333333322222 1111 11233333344 23333 445555899999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHH
Q 019871 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRF 311 (334)
Q Consensus 232 eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~ 311 (334)
+.+-..|+..+.-.|.. ...|.--.-.-.+.|..+..-..|+|+|.++..--+ ++ +-|+..|+ |
T Consensus 1617 eRGRtlfEgll~ayPKR---tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk----------mK--fffKkwLe-y 1680 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKR---TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK----------MK--FFFKKWLE-Y 1680 (1710)
T ss_pred hhhHHHHHHHHhhCccc---hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH----------hH--HHHHHHHH-H
Confidence 99999999999988886 567877777778888899999999999998776211 11 23555555 6
Q ss_pred HHhhhchhHHHHHH
Q 019871 312 DESFINENAINAIK 325 (334)
Q Consensus 312 ~e~~~~~~ai~~~k 325 (334)
++..=++..|+..|
T Consensus 1681 Ek~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1681 EKSHGDEKNVEYVK 1694 (1710)
T ss_pred HHhcCchhhHHHHH
Confidence 66666666666555
No 308
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=77.48 E-value=18 Score=30.40 Aligned_cols=93 Identities=12% Similarity=0.126 Sum_probs=57.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCC-----------hHHHHHHHHHHHHcCCCCHHHH
Q 019871 221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ-----------VKAGLSALEDALLAGYEDFKRV 289 (334)
Q Consensus 221 lG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~-----------~eeAl~~lekAIelgp~~~~~i 289 (334)
++..+++.|++-.|++..+..+...+++...+..++--|..+.++.. .-.|++++.++..+.|.-...+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 45678888999999999999998888764222556666666655442 3467888888888887743311
Q ss_pred hcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 290 RTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 290 ~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
..- . ..|...-.|++.+...++.+
T Consensus 82 ~~l-a-~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 82 FEL-A-SQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHH-H-HHhhhHHHHHHHHHHHHHHh
Confidence 110 0 11222345666666665554
No 309
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=77.10 E-value=26 Score=36.68 Aligned_cols=95 Identities=9% Similarity=-0.009 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhccCH-HH--HHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHHHH-CCC-----
Q 019871 198 REIQMQNYMKKKEQKERR-EQ--DLREGLQLYRTGKYEVAREKFESVLGS-KPTPEESSVASYNVACCYSK-LNQ----- 267 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~-~~--~~nlG~al~~~g~yeeAl~~fekALel-dP~~~e~~~a~yNlA~ay~~-lG~----- 267 (334)
.+.++..+.+-++..|.. .. ..++-.++.++++|.++...+.+-=++ -|+. +...|..|...++ .++
T Consensus 275 ~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS---Ati~YTaALLkaRav~d~fs~e 351 (539)
T PF04184_consen 275 LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS---ATICYTAALLKARAVGDKFSPE 351 (539)
T ss_pred hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch---HHHHHHHHHHHHHhhccccCch
Confidence 355667787777666653 22 249999999999999999988885333 2454 4566777765433 111
Q ss_pred ----------hHHHHHHHHHHHHcCCCCHHHHhcChhh
Q 019871 268 ----------VKAGLSALEDALLAGYEDFKRVRTDPDL 295 (334)
Q Consensus 268 ----------~eeAl~~lekAIelgp~~~~~i~~Dpdl 295 (334)
...|++.+.||++.||.-++.+...+.+
T Consensus 352 ~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~L 389 (539)
T PF04184_consen 352 AASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSL 389 (539)
T ss_pred hhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCC
Confidence 2458899999999999988877666554
No 310
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=76.79 E-value=10 Score=32.94 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHH
Q 019871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKA 270 (334)
Q Consensus 214 ~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~ee 270 (334)
.....+.++...+..|+|.+|++..+.++..+|++ ..+..-+|.+|.++|.-.+
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n---~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDN---EEARQLKADALEQLGYQSE 122 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH-S
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHhcc
Confidence 44556688999999999999999999999999998 5688888888888775543
No 311
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=76.68 E-value=14 Score=41.51 Aligned_cols=90 Identities=19% Similarity=0.282 Sum_probs=66.9
Q ss_pred hhhhHHHHHHHHHHHHHhhccCH----HHHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 019871 193 ISNRVREIQMQNYMKKKEQKERR----EQDLREGLQLYRT----G---KYEVAREKFESVLGSKPTPEESSVASYNVACC 261 (334)
Q Consensus 193 ~~~~l~e~q~~~y~~~iel~~~~----~~~~nlG~al~~~----g---~yeeAl~~fekALeldP~~~e~~~a~yNlA~a 261 (334)
....+...++.-|.+-.+--|.+ +..|..|..+.++ | .|++|+..|++.-.- |.- +.-|-..|.+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~ 561 (932)
T PRK13184 486 LAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VGA---PLEYLGKALV 561 (932)
T ss_pred HhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCC---chHHHhHHHH
Confidence 34455666777777666655654 5557888888653 2 588888888876543 443 5679999999
Q ss_pred HHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 262 YSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 262 y~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
|..+|+++|-+++|.-|++..|..+
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999988743
No 312
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=76.68 E-value=77 Score=30.82 Aligned_cols=170 Identities=17% Similarity=0.072 Sum_probs=96.7
Q ss_pred hhhhHHHHhhcccchhhhhchhcHHHH--HHHhhchhhhhhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHH
Q 019871 157 RVGPLLMKMQKRYGKMEQTGELSEKEI--IRAERNSGVISNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEV 233 (334)
Q Consensus 157 R~G~V~lkLek~~~aie~~~~l~ek~~--~~a~~n~g~~~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yee 233 (334)
|....--++.+...+++.=+++..... +............+.+.++.-|.++++.+|.....+ .+-.+..+..+-++
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Confidence 333344455555666664333333221 111111123334556778888999999999877665 33334457778899
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC-----ChHHHHHHHHHHHHcCCCCHHH-HhcChhhHHH--hcChHHH
Q 019871 234 AREKFESVLGSKPTPEESSVASYNVACCYSKLN-----QVKAGLSALEDALLAGYEDFKR-VRTDPDLENL--RASEEFD 305 (334)
Q Consensus 234 Al~~fekALeldP~~~e~~~a~yNlA~ay~~lG-----~~eeAl~~lekAIelgp~~~~~-i~~Dpdl~~L--r~dp~F~ 305 (334)
..+.+++++..+|++. ..| +++.-..++ .++.....|.+||..-..-... ...+++...+ .-..-|.
T Consensus 84 l~~~we~~l~~~~~~~---~LW--~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~ 158 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSP---ELW--REYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL 158 (321)
T ss_pred HHHHHHHHHHHCCCCh---HHH--HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 9999999999999973 344 333333333 5778888888887753221110 0111111111 0012355
Q ss_pred HHHHHHHHhhhchhHHHHHHHhhccc
Q 019871 306 VLLKRFDESFINENAINAIKSLFGLL 331 (334)
Q Consensus 306 ~lL~~~~e~~~~~~ai~~~k~~~~~~ 331 (334)
++..-..++---+.||-.++.++.|+
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 55555667777888888888887643
No 313
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=76.45 E-value=5.7 Score=25.44 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=22.4
Q ss_pred HHHHHHH--HHHHHCC-----ChHHHHHHHHHHHHcC
Q 019871 253 VASYNVA--CCYSKLN-----QVKAGLSALEDALLAG 282 (334)
Q Consensus 253 ~a~yNlA--~ay~~lG-----~~eeAl~~lekAIelg 282 (334)
.+.|++| .+|..-. +.++|+.+|++|.+.|
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 5788999 5444432 4799999999998875
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.41 E-value=11 Score=33.55 Aligned_cols=107 Identities=10% Similarity=-0.055 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-HHhcChhhHH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-RVRTDPDLEN 297 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-~i~~Dpdl~~ 297 (334)
+....+-.+.++.+++...++..--+.|+.+ ..-.--|..+...|++.+|+..|+...+..|...- .++.---| .
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~---e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL-~ 89 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLRPEFP---ELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL-Y 89 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH-H
Confidence 3566667788899999999999999999984 56777789999999999999999999888886542 22222222 2
Q ss_pred HhcChHHHHHHHHHHHhhhchhHHHHHHHhhc
Q 019871 298 LRASEEFDVLLKRFDESFINENAINAIKSLFG 329 (334)
Q Consensus 298 Lr~dp~F~~lL~~~~e~~~~~~ai~~~k~~~~ 329 (334)
.+.||.|+..-+..-+.--+..++...+.+++
T Consensus 90 ~~~D~~Wr~~A~evle~~~d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 90 ALGDPSWRRYADEVLESGADPDARALVRALLA 121 (160)
T ss_pred HcCChHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 34567777776666566667777777777776
No 315
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=76.34 E-value=8 Score=41.95 Aligned_cols=50 Identities=32% Similarity=0.581 Sum_probs=42.3
Q ss_pred ceEEEeec-CCcceeEee-cCCC---ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE-QPYGLKFAK-GRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~-kPlgl~~~~-~~~g---~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.+|.|- ||.|.-|-- +.|+ -+||-.|+++|.||+.|.+..||.|+.+-
T Consensus 649 k~ldV~L~rkesGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iD 703 (984)
T KOG3209|consen 649 KELDVFLRRKESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCID 703 (984)
T ss_pred cceeEEEEeeccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEec
Confidence 67888888 999987732 2232 89999999999999999999999999984
No 316
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=76.26 E-value=21 Score=36.28 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc---hHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEES---SVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~---~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
....+|+++..++.|+.+++.|++|+.+.-++.+. -..+..++..|..+.++++|+-+..+|.++-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 34589999999999999999999999876554321 2568889999999999999999999998873
No 317
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=75.87 E-value=4.9 Score=38.32 Aligned_cols=55 Identities=15% Similarity=0.057 Sum_probs=39.6
Q ss_pred cceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 95 YGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 95 lgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
+|+.-...+ .-|+.|..+.+++-|++.| ++.||+|+.+ ...++.+....+.++.+
T Consensus 179 lgi~p~~~~g~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~I------NG~~i~~~~~~~~~l~~ 235 (259)
T TIGR01713 179 IRLSPVMKNDKLEGYRLNPGKDPSLFYKSG-LQDGDIAVAL------NGLDLRDPEQAFQALQM 235 (259)
T ss_pred EeEEEEEeCCceeEEEEEecCCCCHHHHcC-CCCCCEEEEE------CCEEcCCHHHHHHHHHh
Confidence 455553322 1389999999999999999 9999999998 34556666665555543
No 318
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.74 E-value=35 Score=31.50 Aligned_cols=53 Identities=25% Similarity=0.283 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHhhccC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 019871 194 SNRVREIQMQNYMKKKEQKER-------REQDLREGLQLYRTGKYEVAREKFESVLGSKP 246 (334)
Q Consensus 194 ~~~l~e~q~~~y~~~iel~~~-------~~~~~nlG~al~~~g~yeeAl~~fekALeldP 246 (334)
.......++..|.++.+.+.. .-..+-+|...++.|++++|+..|.+++...-
T Consensus 137 E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 137 EKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 334456667788888765533 12235899999999999999999999997543
No 319
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.72 E-value=10 Score=33.74 Aligned_cols=51 Identities=18% Similarity=0.010 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 230 ~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
..++.++..++.+...|+ +..+.+.+.++..+|+.++|-..++++..+-|.
T Consensus 126 ~l~~~~~~a~~~l~~~P~----~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRPD----PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 355666777888888897 578999999999999999999999999999883
No 320
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=75.55 E-value=18 Score=33.73 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~---e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
.+.+|..++..|+|++|++.|+.+...-.... ........+..|+..+|+.++.+..+=+.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45999999999999999999999976544321 11346677888999999999888776544
No 321
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.38 E-value=11 Score=35.82 Aligned_cols=62 Identities=15% Similarity=0.011 Sum_probs=49.9
Q ss_pred HHHHHHHHc------CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh-----------------HHHHHHHH
Q 019871 220 REGLQLYRT------GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV-----------------KAGLSALE 276 (334)
Q Consensus 220 nlG~al~~~------g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~-----------------eeAl~~le 276 (334)
.+|.-..+. +.+++++..|.++++++|+. ..+|+..|..+..+-.. ..|+.+|-
T Consensus 257 ~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~ 333 (352)
T PF02259_consen 257 LLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW---EKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYL 333 (352)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHhChhH---HHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHH
Confidence 566656566 89999999999999999998 56899998887665322 45888999
Q ss_pred HHHHcCCC
Q 019871 277 DALLAGYE 284 (334)
Q Consensus 277 kAIelgp~ 284 (334)
+|+.+|+.
T Consensus 334 ~al~~~~~ 341 (352)
T PF02259_consen 334 KALSLGSK 341 (352)
T ss_pred HHHhhCCC
Confidence 99999888
No 322
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=75.19 E-value=7.7 Score=38.51 Aligned_cols=66 Identities=18% Similarity=0.015 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Q 019871 194 SNRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (334)
Q Consensus 194 ~~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay 262 (334)
..+-.+-++.-+..++.+.|...+.+ ..|......++.-+|-.+|-+||.++|.+ ..++-|++...
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n---seALvnR~RT~ 194 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN---SEALVNRARTT 194 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc---hHHHhhhhccc
Confidence 34445567777888899999987765 99999988899999999999999999999 56888887543
No 323
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=74.77 E-value=7.2 Score=24.40 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHC----CChHHHHHHHHHHHHcC
Q 019871 253 VASYNVACCYSKL----NQVKAGLSALEDALLAG 282 (334)
Q Consensus 253 ~a~yNlA~ay~~l----G~~eeAl~~lekAIelg 282 (334)
.+.+++|.+|..- .+.++|+.+|++|.+.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 4788899888642 37899999999998765
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.43 E-value=62 Score=28.69 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=21.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCC
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ 267 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~ 267 (334)
-.|..+...|+|.+|+..|+...+..+.. +.+---+|+|+..+|+
T Consensus 49 ~dg~l~i~rg~w~eA~rvlr~l~~~~~~~---p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 49 FDGWLLIARGNYDEAARILRELLSSAGAP---PYGKALLALCLNAKGD 93 (153)
T ss_pred hHHHHHHHcCCHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHhcCC
Confidence 44555555555555555555555444443 2233334445544444
No 325
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.11 E-value=17 Score=28.38 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHH
Q 019871 252 SVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDE 313 (334)
Q Consensus 252 ~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e 313 (334)
+..+-.+|.-+-+.|++++|+.+|++||++ ....+..-||-. .+ ..|+.-+..|.+
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~---L~q~~~~~pD~~-~k--~~yr~ki~eY~~ 61 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV---LSQIVKNYPDSP-TR--LIYEQMINEYKR 61 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---HHHHHHhCCChH-HH--HHHHHHHHHHHH
Confidence 345667777788888888888888888886 222333333322 22 246666666544
No 326
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=74.08 E-value=2.6 Score=39.16 Aligned_cols=31 Identities=35% Similarity=0.633 Sum_probs=27.1
Q ss_pred CceEEEeeCCCCccccccccccCcEeeeeccc
Q 019871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (334)
Q Consensus 105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~ 136 (334)
.-++|.+|+|++-|+++| +.+||.|+....+
T Consensus 139 ~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV 169 (231)
T KOG3129|consen 139 PFAVVDSVVPGSPADEAG-LCVGDEILKFGNV 169 (231)
T ss_pred ceEEEeecCCCChhhhhC-cccCceEEEeccc
Confidence 358899999999999999 9999999996443
No 327
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.02 E-value=9.1 Score=37.66 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
-.+..+.+.|.+.+|+...++++.++|-+ ...|..+-..|+.+|+--.|+++|++-
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~---e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLS---EQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhh---hHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44567788999999999999999999987 357888888899999988888888865
No 328
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=73.86 E-value=16 Score=35.48 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
..+..++...|+++.++..+++-+..+|.+ -.+|..+=.+|.+.|+...|+..|++.=++
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~---E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYD---EPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 367778889999999999999999999998 368999999999999999999999988664
No 329
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=73.84 E-value=3.6 Score=41.72 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=35.3
Q ss_pred CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHh
Q 019871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR 157 (334)
Q Consensus 105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R 157 (334)
-++.|..|.+++.|+++| +++||+|+.+- ..++.++..+..++...
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vn------g~~V~s~~dl~~~l~~~ 248 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSIN------GEKLRSWTDFVSAVKEN 248 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHHhC
Confidence 368999999999999999 99999999983 23455555565655543
No 330
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=73.27 E-value=8.3 Score=40.71 Aligned_cols=88 Identities=17% Similarity=0.017 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC---CChHHHHHHHHHHHHcCCCCHH-HHhc
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL---NQVKAGLSALEDALLAGYEDFK-RVRT 291 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l---G~~eeAl~~lekAIelgp~~~~-~i~~ 291 (334)
+..+..|+-.+..+....||..|.+++..-|+. ...+-|+|.++++. |+.-.|+.++-.|+.++|...+ +.+-
T Consensus 375 e~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~l 451 (758)
T KOG1310|consen 375 EKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRL 451 (758)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHHhhhccch---hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHH
Confidence 344577888888899999999999999999997 57899999999985 5677899999999999998776 3322
Q ss_pred ChhhHHHhcChHHHHHHH
Q 019871 292 DPDLENLRASEEFDVLLK 309 (334)
Q Consensus 292 Dpdl~~Lr~dp~F~~lL~ 309 (334)
-.. |....++.++|+
T Consensus 452 a~a---L~el~r~~eal~ 466 (758)
T KOG1310|consen 452 ARA---LNELTRYLEALS 466 (758)
T ss_pred HHH---HHHHhhHHHhhh
Confidence 222 333345555553
No 331
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.60 E-value=7.5 Score=27.14 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=23.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 255 SYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 255 ~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
-+++|.+|..+|+.+.|.+.+++.+.-+
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3688999999999999999999998643
No 332
>PRK10941 hypothetical protein; Provisional
Probab=71.98 E-value=20 Score=34.44 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 019871 199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~ 249 (334)
+.++..-...+.+.|++...+ .+|.+++++|.+..|+..++..++..|+++
T Consensus 198 ~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 198 ELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 445566666778899876655 899999999999999999999999999985
No 333
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.84 E-value=74 Score=33.44 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC----CChHHHHHHHHHHHHcCCC
Q 019871 215 REQDLREGLQLYRTG---KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL----NQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 215 ~~~~~nlG~al~~~g---~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l----G~~eeAl~~lekAIelgp~ 284 (334)
....+.+|.++.... ++..|.++|..|...-- ..+.|++|.||..- -+...|+.++.+|.+.+..
T Consensus 325 ~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-----~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~ 396 (552)
T KOG1550|consen 325 PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-----ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP 396 (552)
T ss_pred chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh
Confidence 445578888886655 68899999999987543 36999999999763 3789999999999999953
No 334
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=71.84 E-value=28 Score=36.54 Aligned_cols=82 Identities=12% Similarity=0.085 Sum_probs=66.4
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCC-hHHHHHHHHHHHH
Q 019871 203 QNYMKKKEQKERREQDLREGLQLYRTGK-YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ-VKAGLSALEDALL 280 (334)
Q Consensus 203 ~~y~~~iel~~~~~~~~nlG~al~~~g~-yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~-~eeAl~~lekAIe 280 (334)
.-|+.+....++|...+-.=..+.+..+ |.+--..|.+++...|+++ ..|.-.|--....+. ++.|-..+.++|.
T Consensus 92 ~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~---dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 92 FLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNP---DLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCc---hhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 5677777777888887766667766666 9999999999999999994 578776666666665 8999999999999
Q ss_pred cCCCCHH
Q 019871 281 AGYEDFK 287 (334)
Q Consensus 281 lgp~~~~ 287 (334)
.+|+...
T Consensus 169 ~npdsp~ 175 (568)
T KOG2396|consen 169 FNPDSPK 175 (568)
T ss_pred cCCCChH
Confidence 9998665
No 335
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=71.71 E-value=1e+02 Score=30.02 Aligned_cols=54 Identities=13% Similarity=-0.024 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.+.-+..|++||+.+|++ ...+...=-++.+....++-.+-.++++..+|.++.
T Consensus 47 ~E~klsilerAL~~np~~---~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~ 100 (321)
T PF08424_consen 47 AERKLSILERALKHNPDS---ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPE 100 (321)
T ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChH
Confidence 567789999999999987 345555555666778889999999999999998776
No 336
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=71.58 E-value=2.6 Score=41.28 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=50.1
Q ss_pred CcceeEeecC-CC-ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhHHHHhhcccch
Q 019871 94 PYGLKFAKGR-DG-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKRYGK 171 (334)
Q Consensus 94 Plgl~~~~~~-~g-~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V~lkLek~~~a 171 (334)
=.||.+.-+. -+ -+||..|-.+..|.|.|.|..||.|++|-++-. ....--.|.++|..-.+.|..-+.+...+
T Consensus 17 liGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~sv----KGktKveVAkmIQ~~~~eV~IhyNKL~ad 92 (429)
T KOG3651|consen 17 LIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISV----KGKTKVEVAKMIQVSLNEVKIHYNKLEAD 92 (429)
T ss_pred ceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceee----cCccHHHHHHHHHHhccceEEEehhcccC
Confidence 3577772211 01 589999999999999999999999999843211 11111146677777777776666655555
Q ss_pred hh
Q 019871 172 ME 173 (334)
Q Consensus 172 ie 173 (334)
-.
T Consensus 93 p~ 94 (429)
T KOG3651|consen 93 PT 94 (429)
T ss_pred cc
Confidence 43
No 337
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=70.99 E-value=5.9 Score=30.91 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGS 244 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALel 244 (334)
..++..+-+.|+|++|+.+|+++|++
T Consensus 10 a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 10 AINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 46777888888888888888877754
No 338
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=69.47 E-value=7.4 Score=39.58 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC------CcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTP------EESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~------~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe 280 (334)
-+-.++.-+|+|..|++..+- |+++... +-....+|..|.||.++++|.+|+..|...+-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566788999999887653 3333221 00135788999999999999999999988764
No 339
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=68.77 E-value=3.9 Score=41.80 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=32.5
Q ss_pred ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
..+|.+|.|++-|+|+| +++||+|+.+- ..++.+.......+..
T Consensus 127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vn------G~~V~~~~~l~~~v~~ 170 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVD------GIETPDWDAVRLALVS 170 (449)
T ss_pred CccccccCCCCHHHHcC-CCCCCEEEEEC------CEEcCCHHHHHHHHHh
Confidence 35799999999999999 99999999983 2344555544444433
No 340
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=68.66 E-value=45 Score=24.67 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 253 VASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 253 ~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
..+.+.|.-+-..|++++|+.+|.+|++.
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34566677777778888888888888776
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.44 E-value=8.9 Score=26.76 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLG 243 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALe 243 (334)
++++.+|.++|+++.|...++++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999995
No 342
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=68.38 E-value=10 Score=28.20 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGS 244 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALel 244 (334)
...+.|..+-+.|+|++|+.+|.++++.
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3457778888888888888888887753
No 343
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.21 E-value=20 Score=37.66 Aligned_cols=62 Identities=16% Similarity=0.099 Sum_probs=51.8
Q ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC---ChHHHHHHHHHHHHcCCC
Q 019871 218 DLREGLQLYRTG-----KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN---QVKAGLSALEDALLAGYE 284 (334)
Q Consensus 218 ~~nlG~al~~~g-----~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG---~~eeAl~~lekAIelgp~ 284 (334)
.+.+|.+|++.. +++.|+..|.++-++...+ +.|++|.||..-. ++..|.++|..|.+.|..
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~-----a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~ 360 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD-----AQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI 360 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch-----HHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh
Confidence 457888888743 7888999999999987664 8999999998866 467999999999988764
No 344
>PF12854 PPR_1: PPR repeat
Probab=68.10 E-value=12 Score=24.18 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 253 VASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 253 ~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
..|.-+-.+|.+.|++++|++.|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 5788888888899999999888875
No 345
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=68.10 E-value=43 Score=37.44 Aligned_cols=49 Identities=22% Similarity=0.134 Sum_probs=36.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 225 l~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
|...|.+++|++.-+.-=++.- ...|||.|--+...++.+.|+++|+|+
T Consensus 836 yQs~g~w~eA~eiAE~~DRiHL-----r~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 836 YQSQGMWSEAFEIAETKDRIHL-----RNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHhcccHHHHHHHHhhccceeh-----hhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 4456777777766433222222 358999999999999999999999998
No 346
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=67.51 E-value=67 Score=29.92 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC---------
Q 019871 200 IQMQNYMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN--------- 266 (334)
Q Consensus 200 ~q~~~y~~~iel~~~~~~~~nlG~al~~----~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG--------- 266 (334)
.+..-|.++.+.. .....+++|..+.. ..++++|+..|.+|.+... . .++|+++ ++...|
T Consensus 173 ~A~~~~~~aa~~~-~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~----~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 173 KALYLYRKAAELG-NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-G----AACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred hHHHHHHHHHHhc-CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-H----HHHHHHH-HHHhcCCCchhhhhc
Confidence 3445555544433 33445688866644 3478899999999998776 2 5888888 665555
Q ss_pred ------ChHHHHHHHHHHHHcCCCCHH
Q 019871 267 ------QVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 267 ------~~eeAl~~lekAIelgp~~~~ 287 (334)
+...|+.++.++...++....
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~~~ 272 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFDNAC 272 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCChhHH
Confidence 778888888888888776443
No 347
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.42 E-value=24 Score=37.12 Aligned_cols=65 Identities=25% Similarity=0.224 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCC-cchHHHHHHHHHHHHCCC-hHHHHHHHHHHHHcCC
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSK---PTPE-ESSVASYNVACCYSKLNQ-VKAGLSALEDALLAGY 283 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeld---P~~~-e~~~a~yNlA~ay~~lG~-~eeAl~~lekAIelgp 283 (334)
+-+|.++-.+|+-..|..+|..+++.. -++. -.+.|+|.+|+.|..+|. +.+|.++|.+|=+.+-
T Consensus 453 lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 453 LLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 489999999999999999999988432 1111 126799999999999999 9999999999987753
No 348
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.12 E-value=27 Score=35.22 Aligned_cols=83 Identities=10% Similarity=-0.038 Sum_probs=64.8
Q ss_pred HHHHHHHhhccCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871 203 QNYMKKKEQKERREQDLRE-GLQLYRTGKYEVAREKFESVLGS-KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (334)
Q Consensus 203 ~~y~~~iel~~~~~~~~nl-G~al~~~g~yeeAl~~fekALel-dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe 280 (334)
....+-+...|.+..+++. -.+++-+|+...-...+++.+-. +|+-|-++..+--.|.++...|-+++|.+.-++|++
T Consensus 124 ~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralq 203 (491)
T KOG2610|consen 124 IEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQ 203 (491)
T ss_pred HHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhcc
Confidence 4455666677888777643 36778899999999999999966 777653334444567889999999999999999999
Q ss_pred cCCCC
Q 019871 281 AGYED 285 (334)
Q Consensus 281 lgp~~ 285 (334)
+|+.|
T Consensus 204 iN~~D 208 (491)
T KOG2610|consen 204 INRFD 208 (491)
T ss_pred CCCcc
Confidence 99964
No 349
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=67.07 E-value=86 Score=31.23 Aligned_cols=107 Identities=15% Similarity=0.075 Sum_probs=73.5
Q ss_pred HHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC------------------Cc---chHHHHHHHH
Q 019871 208 KKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGS-----KPTP------------------EE---SSVASYNVAC 260 (334)
Q Consensus 208 ~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALel-----dP~~------------------~e---~~~a~yNlA~ 260 (334)
-+...|-..+. +.++.++..+|+++.|-+..++||=. .|.+ .+ .-.+.+.-..
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 34455655444 59999999999999999999998621 1222 01 1245566667
Q ss_pred HHHHCCChHHHHHHHHHHHHcCCC-CHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 261 CYSKLNQVKAGLSALEDALLAGYE-DFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 261 ay~~lG~~eeAl~~lekAIelgp~-~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
.+.+.|-+..|+++++--+.++|. |+--++---|+-.||. .+|+-+++-++...
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs-~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRS-RQYQWLIDFSESPL 166 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhc-CCHHHHHHHHHhHh
Confidence 788899999999999999999998 6654444444555655 56666666555443
No 350
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=66.92 E-value=32 Score=35.53 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=56.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CCCc-------chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-HHhcC
Q 019871 222 GLQLYRTGKYEVAREKFESVLGSKP-TPEE-------SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-RVRTD 292 (334)
Q Consensus 222 G~al~~~g~yeeAl~~fekALeldP-~~~e-------~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-~i~~D 292 (334)
+.-....|+|..|++.+.+...+.- ..+. .+..--.+..||.++++.+.|+.+--+.|-++|.++. ++++-
T Consensus 190 k~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqA 269 (569)
T PF15015_consen 190 KKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQA 269 (569)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHH
Confidence 3333455777777887777765542 3221 1233457899999999999999999999999999776 66655
Q ss_pred hhhHHHhcChHHHHHH
Q 019871 293 PDLENLRASEEFDVLL 308 (334)
Q Consensus 293 pdl~~Lr~dp~F~~lL 308 (334)
.-|.. ..+|.++-
T Consensus 270 avfR~---LeRy~eAa 282 (569)
T PF15015_consen 270 AVFRR---LERYSEAA 282 (569)
T ss_pred HHHHH---HHHHHHHH
Confidence 44333 34555543
No 351
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=66.85 E-value=24 Score=34.23 Aligned_cols=61 Identities=18% Similarity=0.090 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhhchhHHHHHHHh
Q 019871 252 SVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENAINAIKSL 327 (334)
Q Consensus 252 ~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~~~ai~~~k~~ 327 (334)
..++..++-.+...|+++.++..+++-|+++|-+ .+.+.++++.|-..-....||.+++++
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~---------------E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYD---------------EPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc---------------hHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4688999999999999999999999999999984 346788888888888888888888776
No 352
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.56 E-value=44 Score=35.12 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=50.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 226 ~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
.++++++.+-..|++-|+..|.+ -.+|..-|..-..||+.+.|-..|+-||...--+.
T Consensus 448 lqL~efDRcRkLYEkfle~~Pe~---c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEFSPEN---CYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred HHHhhHHHHHHHHHHHHhcChHh---hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 57889999999999999999998 67899999999999999999999999988754333
No 353
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=65.90 E-value=8.7 Score=29.93 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=11.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 019871 220 REGLQLYRTGKYEVAREKFESVLG 243 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALe 243 (334)
.++..+-+.|+|++|+.+|.++|+
T Consensus 11 ~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 11 RLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 334444444555554444444443
No 354
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=65.89 E-value=45 Score=35.58 Aligned_cols=66 Identities=17% Similarity=0.024 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHH-HHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 220 REGLQLYRTGKYEVAREKFES-VLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fek-ALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
++|.++...|..-.++..+.+ +....|.+.+ ....+|.++..+..+|+..++..+++++.++.|.+
T Consensus 106 ~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 106 NLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 555555444444444444433 5555555521 01112233555555555555555555555555554
No 355
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=65.24 E-value=5.6 Score=40.35 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=26.0
Q ss_pred CceEEEeeCCCCccccccccccCcEeeee
Q 019871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
-+++|..|.+++.|+|+| +++||+|+.+
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~v 155 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSV 155 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEE
Confidence 467899999999999999 9999999997
No 356
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=65.22 E-value=31 Score=38.57 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=11.7
Q ss_pred ccCcEeeeeccccccc
Q 019871 125 QVGDKVLATSAVFGTE 140 (334)
Q Consensus 125 ~~gD~v~~~sa~fg~~ 140 (334)
..|||++.++++...+
T Consensus 109 ~~g~t~vl~t~~~~~~ 124 (891)
T PLN00207 109 TDGETIVYTSVCLADV 124 (891)
T ss_pred EECCeEEEEEEEeccC
Confidence 4499999988776543
No 357
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.98 E-value=89 Score=30.30 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
+.++.++--..+.-+.++|+..|++++++-.+... ....+-..+..|.++.+++||-..+.|-..+.
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~ 180 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA 180 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence 34456666677777788888888888877555421 12344556667777778888777777665554
No 358
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=64.98 E-value=1.1e+02 Score=33.96 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=28.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 225 l~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
.....+|..|+...+.....+-.. -.|-.+|--|+..|+++-|.+.|-++
T Consensus 742 ai~akew~kai~ildniqdqk~~s----~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTAS----GYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcccc----ccchHHHHHhccchhHHHHHHHHHhc
Confidence 345566666666665544443332 22345566677777777777666544
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=64.82 E-value=49 Score=30.67 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=36.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHHHHCCChHHHHHH
Q 019871 224 QLYRTGKYEVAREKFESVLGSKPTP-EESSVASYNVACCYSKLNQVKAGLSA 274 (334)
Q Consensus 224 al~~~g~yeeAl~~fekALeldP~~-~e~~~a~yNlA~ay~~lG~~eeAl~~ 274 (334)
.+|-..+-+.|+..+.++|++.+.+ ...+..+..+|..|.++|+++.|--|
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 4455778888888888888776554 33467788888888888888877543
No 360
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.75 E-value=51 Score=31.89 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=33.8
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhc----CCCCCcchHHHHHHHHHHHHCCC-hHHHHHHHHHH
Q 019871 215 REQDLREGLQL-YRTGKYEVAREKFESVLGS----KPTPEESSVASYNVACCYSKLNQ-VKAGLSALEDA 278 (334)
Q Consensus 215 ~~~~~nlG~al-~~~g~yeeAl~~fekALel----dP~~~e~~~a~yNlA~ay~~lG~-~eeAl~~lekA 278 (334)
..+.++++..+ .+.|..+-|-..+++|-+. +|+. +.-+|.+|+.....++ ...|.+.+.++
T Consensus 90 vvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~---AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 90 VVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDD---ALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHH---HHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 34455555444 4566766666666666532 3433 4566777766655443 35555555554
No 361
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.54 E-value=4.8 Score=38.80 Aligned_cols=44 Identities=27% Similarity=0.440 Sum_probs=39.6
Q ss_pred eecCCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeee
Q 019871 90 EIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 90 ~l~kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
.=++-|||++..+.-|++||..|.+|+.-|+-..|.|||-|.++
T Consensus 134 KsedalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEai 177 (334)
T KOG3938|consen 134 KSEDALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAI 177 (334)
T ss_pred ecccccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhh
Confidence 33488999998877889999999999999999999999999987
No 362
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=64.13 E-value=31 Score=38.50 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=48.6
Q ss_pred HHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCC-------------------CCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871 216 EQDL-REGLQLYRTGKYEVAREKFESVLGSKPT-------------------PEESSVASYNVACCYSKLNQVKAGLSAL 275 (334)
Q Consensus 216 ~~~~-nlG~al~~~g~yeeAl~~fekALeldP~-------------------~~e~~~a~yNlA~ay~~lG~~eeAl~~l 275 (334)
+..+ ..|.-+...|+.+.|+..|..|-.-... ..+ ..|-|.+|.-|-..|++.+|+..|
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd-~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD-KAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc-HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444 6677778899999999999886443211 111 468899999999999999999999
Q ss_pred HHHHH
Q 019871 276 EDALL 280 (334)
Q Consensus 276 ekAIe 280 (334)
.+|-.
T Consensus 991 TrAqa 995 (1416)
T KOG3617|consen 991 TRAQA 995 (1416)
T ss_pred HHHHH
Confidence 98843
No 363
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=62.80 E-value=3.6 Score=43.97 Aligned_cols=55 Identities=24% Similarity=0.439 Sum_probs=44.2
Q ss_pred hhhhccceEEEeecC----CcceeEeecCCC----ceEEEeeCCCCccccccccccCcEeeee
Q 019871 79 EQEEKYEEYEVEIEQ----PYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 79 ~~~~~~~~~~v~l~k----Plgl~~~~~~~g----~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
-|-..-++-+|-|+| +||+++-|+.=| -|.+.-+-.+|-|+|+|.+..||.|+++
T Consensus 639 ~FakkE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaI 701 (829)
T KOG3605|consen 639 HFAKKENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSI 701 (829)
T ss_pred HhhhhcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEee
Confidence 454455566777774 899998886555 6778888999999999999999999997
No 364
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=62.70 E-value=1.3e+02 Score=28.45 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhc----CCCC---Cc----chHHHHHHHHHHHHCCChHH
Q 019871 218 DLREGLQLYRTG-KYEVAREKFESVLGS----KPTP---EE----SSVASYNVACCYSKLNQVKA 270 (334)
Q Consensus 218 ~~nlG~al~~~g-~yeeAl~~fekALel----dP~~---~e----~~~a~yNlA~ay~~lG~~ee 270 (334)
.|+.|..+++.+ +|++|+..+++|+++ .+.. ++ +...+..++.+|...+..+.
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~ 102 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYES 102 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHH
Confidence 469999999999 999999999999988 3221 11 23567888999988887653
No 365
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=62.37 E-value=13 Score=28.90 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=9.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 019871 221 EGLQLYRTGKYEVAREKFESVL 242 (334)
Q Consensus 221 lG~al~~~g~yeeAl~~fekAL 242 (334)
.|..+-+.|+|++|+.+|.++|
T Consensus 12 ~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 12 RAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 3334444444444444444333
No 366
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.34 E-value=42 Score=26.42 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~ 249 (334)
.+++|......|++++|+..+++|+++-.+..
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 56999999999999999999999998876654
No 367
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=62.04 E-value=90 Score=29.49 Aligned_cols=72 Identities=19% Similarity=0.075 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------------------C----CcchHHHHHHHHHHHH
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPT---------------------------P----EESSVASYNVACCYSK 264 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~---------------------------~----~e~~~a~yNlA~ay~~ 264 (334)
...+..+..+...|+-.+|+..++..+..... . ...+.+++-+|.-...
T Consensus 185 ~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~ 264 (352)
T PF02259_consen 185 RVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE 264 (352)
T ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence 44457788888999999999998888871111 0 0123556666666666
Q ss_pred C------CChHHHHHHHHHHHHcCCCCHH
Q 019871 265 L------NQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 265 l------G~~eeAl~~lekAIelgp~~~~ 287 (334)
+ +..++++..|.+|+++.|...+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 265 LYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred hccccccccHHHHHHHHHHHHHhChhHHH
Confidence 6 7888899999999999887655
No 368
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=61.83 E-value=8.5 Score=33.73 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~ 249 (334)
+-.|.++..+|+.++|+.|+.+.+..|+.+|+|.
T Consensus 72 e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 72 ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 3356999999999999999999999999999984
No 369
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=60.74 E-value=30 Score=35.53 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHH----HHHcCCCCHHHHhc
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALED----ALLAGYEDFKRVRT 291 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lek----AIelgp~~~~~i~~ 291 (334)
|.+|....-+++|..|.++|-+|+...|++.- .....-.+-|+-..+|.+.+=....+. +|...+. ...+.+
T Consensus 251 yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~ksL~~Yf~-Lt~AVr 329 (493)
T KOG2581|consen 251 YYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMRKSLRPYFK-LTQAVR 329 (493)
T ss_pred HHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHHHHHHHHHH-HHHHHH
Confidence 59999999999999999999999999998620 012233444556678888875554443 4444322 112333
Q ss_pred ChhhHHHhcChHHHHHHHHHHHhhhchhHHHHHH
Q 019871 292 DPDLENLRASEEFDVLLKRFDESFINENAINAIK 325 (334)
Q Consensus 292 Dpdl~~Lr~dp~F~~lL~~~~e~~~~~~ai~~~k 325 (334)
..|+ .+|..-+++|...|..+.....|+
T Consensus 330 ~gdl------kkF~~~leq~k~~f~~D~ty~Liv 357 (493)
T KOG2581|consen 330 LGDL------KKFNETLEQFKDKFQADGTYTLIV 357 (493)
T ss_pred HhhH------HHHHHHHHHHHHHHhhCCcchHHH
Confidence 3333 479999999999887666554443
No 370
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=60.07 E-value=1.6e+02 Score=30.46 Aligned_cols=36 Identities=8% Similarity=0.003 Sum_probs=22.8
Q ss_pred HHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Q 019871 207 KKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVL 242 (334)
Q Consensus 207 ~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekAL 242 (334)
.+.++.|+-.++. ..-...++.|+|+.||+..+...
T Consensus 179 ~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 179 RAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3445566655554 33345577888888888877644
No 371
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.00 E-value=12 Score=36.60 Aligned_cols=28 Identities=32% Similarity=0.620 Sum_probs=26.1
Q ss_pred ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
|++|..+.+++.|+|++ ++.||+|+.+.
T Consensus 271 G~~V~~v~~~spa~~ag-i~~Gdii~~vn 298 (347)
T COG0265 271 GAVVLGVLPGSPAAKAG-IKAGDIITAVN 298 (347)
T ss_pred ceEEEecCCCChHHHcC-CCCCCEEEEEC
Confidence 49999999999999999 99999999984
No 372
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.13 E-value=46 Score=30.67 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=13.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 019871 220 REGLQLYRTGKYEVAREKFESVLG 243 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALe 243 (334)
-+|++.++.|+|..|...|.+...
T Consensus 172 ALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhHHHHhccchHHHHHHHHHHHc
Confidence 555555566666666555555554
No 373
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=59.08 E-value=32 Score=34.52 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=57.9
Q ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 212 KERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 212 ~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.|..-..+|++.++.+..-.+.++...+...+. |.-..+...|--+|-.+.++|+.++|-..|++||.+-.+..+
T Consensus 326 apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~-~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 326 APSPVVTLNRAVALAMREGPAAGLAMVEALLAR-PRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred CCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcc-cccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 344444569999998888888888887766643 332223467888999999999999999999999999887554
No 374
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=58.60 E-value=58 Score=34.78 Aligned_cols=110 Identities=14% Similarity=0.003 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhccCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH-
Q 019871 201 QMQNYMKKKEQKERREQDL---REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE- 276 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~~---nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le- 276 (334)
+...|..-+.+++..++.. .+...+...+....|.-.+..++..+|++ ..++.|+|.+....|....++..+.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN---CPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc---chHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444554445556555542 25666677888888888888888888888 5688888888877777665555544
Q ss_pred HHHHcCCCCHHHHhcC-------hhhHHHhcChHHHHHHHHHHH
Q 019871 277 DALLAGYEDFKRVRTD-------PDLENLRASEEFDVLLKRFDE 313 (334)
Q Consensus 277 kAIelgp~~~~~i~~D-------pdl~~Lr~dp~F~~lL~~~~e 313 (334)
.|....|.+...+..- ..+..|....++...+.+..+
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d 170 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVD 170 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4888888776644333 223334445566666655433
No 375
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=57.97 E-value=17 Score=21.59 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 254 ASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 254 a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
.|..+=.+|.+.|++++|.+.+++-.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666777888888888888887766654
No 376
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.97 E-value=63 Score=35.14 Aligned_cols=59 Identities=7% Similarity=0.075 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
++..+|..+.+.+.|++.+++|=+.+|++ +-..+.+-|+....|.-++|+.++.+....
T Consensus 399 ~l~~CYL~L~QLD~A~E~~~EAE~~d~~~---~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 399 ALQVCYLKLEQLDNAVEVYQEAEEVDRQS---PLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 88899999999999999999999999998 567788889999999999999998766443
No 377
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=57.63 E-value=23 Score=38.67 Aligned_cols=84 Identities=19% Similarity=0.120 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhccCHHH----HH-HHHH--HHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871 201 QMQNYMKKKEQKERREQ----DL-REGL--QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~----~~-nlG~--al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
.+-.|...+.+.|.+.- .+ +... ++..+|+|..++...+-|+...|.. ..++.-+|.||..+++++-|++
T Consensus 72 ~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i---~~~Ll~r~~~y~al~k~d~a~r 148 (748)
T KOG4151|consen 72 AMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRI---SKALLKRARKYEALNKLDLAVR 148 (748)
T ss_pred cchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchH---HHHHhhhhhHHHHHHHHHHHHH
Confidence 44556666666664321 11 5554 4467899999999999999999998 6799999999999999999999
Q ss_pred HHHHHHHcCCCCHH
Q 019871 274 ALEDALLAGYEDFK 287 (334)
Q Consensus 274 ~lekAIelgp~~~~ 287 (334)
++.-..+..|.+..
T Consensus 149 dl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 149 DLRIVEKMDPSNVS 162 (748)
T ss_pred HHHHHhcCCCCcch
Confidence 99888999998743
No 378
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=57.08 E-value=50 Score=31.41 Aligned_cols=65 Identities=18% Similarity=-0.016 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH-CCChHHHHHHHHHHHHcCCCCHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK-LNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~-lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.......+.+..+.|-..|.+|++..+-. ...|..-|..-.. .++.+.|..-|+++++.-|.+..
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~---~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~ 71 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCT---YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS----THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH
Confidence 33444555566999999999999655543 4577777777555 45666699999999999887665
No 379
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=56.41 E-value=12 Score=33.98 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=33.8
Q ss_pred cceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 95 YGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 95 lgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.||.+.+ .+|.+.|++|..|+.|+++| +.-|++|+.+.
T Consensus 113 ~GL~l~~-e~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v~ 150 (183)
T PF11874_consen 113 AGLTLME-EGGKVIVDEVEFGSPAEKAG-IDFDWEITEVE 150 (183)
T ss_pred CCCEEEe-eCCEEEEEecCCCCHHHHcC-CCCCcEEEEEE
Confidence 5888855 68899999999999999999 99999999874
No 380
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=56.07 E-value=32 Score=30.48 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=77.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-HHhcChhhHHHhcCh
Q 019871 224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-RVRTDPDLENLRASE 302 (334)
Q Consensus 224 al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-~i~~Dpdl~~Lr~dp 302 (334)
.-...++.+++...++..--+.|+.+ ....--|..+...|++++|+..|+...+-.+...- ..+.---| ..+.||
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLrP~~~---e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL-~al~Dp 94 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLRPNLK---ELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL-NAKGDA 94 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCcc---ccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH-HhcCCh
Confidence 33448999999999998889999985 35566688899999999999999999998876331 22222222 245677
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHhhc
Q 019871 303 EFDVLLKRFDESFINENAINAIKSLFG 329 (334)
Q Consensus 303 ~F~~lL~~~~e~~~~~~ai~~~k~~~~ 329 (334)
.|+..-...-+.--+.+|+-..|.++|
T Consensus 95 ~Wr~~A~~~le~~~~~~a~~Lv~al~g 121 (153)
T TIGR02561 95 EWHVHADEVLARDADADAVALVRALLG 121 (153)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHhc
Confidence 888777777777788888888888887
No 381
>PF12854 PPR_1: PPR repeat
Probab=55.97 E-value=27 Score=22.39 Aligned_cols=28 Identities=14% Similarity=-0.005 Sum_probs=21.5
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 019871 213 ERREQDLREGLQLYRTGKYEVAREKFES 240 (334)
Q Consensus 213 ~~~~~~~nlG~al~~~g~yeeAl~~fek 240 (334)
|+....-.+-..+.+.|+.++|++.|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3333334667789999999999999986
No 382
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=55.50 E-value=70 Score=24.02 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=16.9
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 256 YNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 256 yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
...|..+-..|++++|+.+|.+|++.
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555567777777777777765
No 383
>PF13041 PPR_2: PPR repeat family
Probab=55.45 E-value=32 Score=23.44 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 253 VASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 253 ~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
..|.-+=.+|.+.|++++|++.|++-.+.|-.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~ 35 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIK 35 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 56777778888888888888888888877654
No 384
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=55.07 E-value=29 Score=20.82 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 254 ASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 254 a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
.|..+=.+|.+.|++++|++.|++..+.|
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 46667778889999999999998877655
No 385
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=54.98 E-value=8.3 Score=39.58 Aligned_cols=24 Identities=38% Similarity=0.765 Sum_probs=22.2
Q ss_pred EEeeCCCCccccccccccCcEeeee
Q 019871 109 IDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 109 v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
|..|.|++-|+++| +++||+|+.+
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsI 25 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSI 25 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEE
Confidence 56789999999999 9999999998
No 386
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=54.52 E-value=90 Score=34.45 Aligned_cols=85 Identities=11% Similarity=0.058 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH----------HHcCCCCHHHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA----------LLAGYEDFKRV 289 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA----------Ielgp~~~~~i 289 (334)
+...++|...+|++=.. ..+.=|++ +..+=-+|-.+...|.-++|++++-|. .+++-+.
T Consensus 827 ~~~ecly~le~f~~LE~----la~~Lpe~---s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~---- 895 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEV----LARTLPED---SELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWG---- 895 (1189)
T ss_pred hHHHHHHHHHhhhhHHH----HHHhcCcc---cchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHH----
Confidence 44445555555544222 22233555 346677788888888888888776542 2232221
Q ss_pred hcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 290 RTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 290 ~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
.--+|+.-.+.|+.+.+|.++.-.++
T Consensus 896 -~avelaq~~~l~qv~tliak~aaqll 921 (1189)
T KOG2041|consen 896 -EAVELAQRFQLPQVQTLIAKQAAQLL 921 (1189)
T ss_pred -HHHHHHHhccchhHHHHHHHHHHHHH
Confidence 11233444456777777777665554
No 387
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=54.28 E-value=77 Score=35.45 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=46.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 226 ~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
...++|..|+...++.++..|+- ..+---.|..+.++|+.++|+..|+.--...+.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~---~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~ 75 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA---LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT 75 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC
Confidence 46688999999999999999997 467777899999999999999766654444444
No 388
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=53.96 E-value=26 Score=26.43 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLG 243 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALe 243 (334)
+..|...-+.|+|++|+.+|.++++
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666677777777777766654
No 389
>PF12464 Mac: Maltose acetyltransferase ; InterPro: IPR024688 Maltose acetyltransferase uses acetyl-CoA as acetyl donor to acetylate cytoplasmic maltose [], while galactoside acetyltransferase act on galactosides. ; GO: 0016407 acetyltransferase activity; PDB: 3V4E_A 4EGG_E 4DCL_A 3FTT_A 1KRR_B 1KRU_A 1KRV_C 1KQA_A 3NZ2_J 3ECT_A ....
Probab=53.27 E-value=25 Score=24.84 Aligned_cols=38 Identities=34% Similarity=0.608 Sum_probs=30.6
Q ss_pred cChhhHHHhcChHHHHHHHHHHHhh--hchhHHHHHHHhhcc
Q 019871 291 TDPDLENLRASEEFDVLLKRFDESF--INENAINAIKSLFGL 330 (334)
Q Consensus 291 ~Dpdl~~Lr~dp~F~~lL~~~~e~~--~~~~ai~~~k~~~~~ 330 (334)
.||+|..++. +=..++.+|.... ..+.--..++++||.
T Consensus 13 ~d~el~~~r~--~a~~l~~~~N~~~~~d~~~r~~llk~l~g~ 52 (55)
T PF12464_consen 13 SDPELQEIRA--RAKRLLQRYNQTPPEDPEERQELLKELFGS 52 (55)
T ss_dssp TSHHHHHHHH--HHHHHHHHHHHSHTTTHHHHHHHHHHHSSB
T ss_pred CChHHHHHHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHhhh
Confidence 4888888876 7788888998888 566777889999993
No 390
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=53.14 E-value=32 Score=37.65 Aligned_cols=82 Identities=22% Similarity=0.279 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHHHH--CCChHHHHHHHHHHHHcCCCCHHHH-hcC
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPE-ESSVASYNVACCYSK--LNQVKAGLSALEDALLAGYEDFKRV-RTD 292 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~-e~~~a~yNlA~ay~~--lG~~eeAl~~lekAIelgp~~~~~i-~~D 292 (334)
++...|+.+++.++|.+|.-.|..++.+-|.++ ..+....|++.||++ +|++..++..++-|+...|+.-..+ .++
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~ 134 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRA 134 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhh
Confidence 344778999999999999999999999999542 235667888988876 4589999999999999999855532 333
Q ss_pred hhhHHH
Q 019871 293 PDLENL 298 (334)
Q Consensus 293 pdl~~L 298 (334)
+-+..+
T Consensus 135 ~~y~al 140 (748)
T KOG4151|consen 135 RKYEAL 140 (748)
T ss_pred hHHHHH
Confidence 444433
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=53.11 E-value=29 Score=20.56 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHH
Q 019871 229 GKYEVAREKFESVLGSKPTPEESSVASYN 257 (334)
Q Consensus 229 g~yeeAl~~fekALeldP~~~e~~~a~yN 257 (334)
|+++.|...|++++...|.+ ...|..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~---~~~W~~ 26 (33)
T smart00386 1 GDIERARKIYERALEKFPKS---VELWLK 26 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCC---hHHHHH
Confidence 46778888888888888866 345543
No 392
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=53.02 E-value=1.2e+02 Score=26.92 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=42.7
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 215 REQDLREGLQL-YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 215 ~~~~~nlG~al-~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
..+.+++++-. .+.|+-+.=-+.+....+-+.-+ +..++.+|.+|.++|+..+|-+.+.+|-+.|-.
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~---p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEIN---PEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCC---HHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34556777544 55666655555555555322222 678999999999999999999999999988753
No 393
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=52.40 E-value=21 Score=27.81 Aligned_cols=16 Identities=6% Similarity=0.158 Sum_probs=8.7
Q ss_pred CChHHHHHHHHHHHHc
Q 019871 266 NQVKAGLSALEDALLA 281 (334)
Q Consensus 266 G~~eeAl~~lekAIel 281 (334)
|++++|+..|..||+.
T Consensus 20 gny~eA~~lY~~ale~ 35 (75)
T cd02680 20 GNAEEAIELYTEAVEL 35 (75)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4555555555555554
No 394
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=52.35 E-value=19 Score=38.51 Aligned_cols=50 Identities=32% Similarity=0.719 Sum_probs=39.5
Q ss_pred ccceEEEeecCC----cceeEeecCC------C--ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 83 KYEEYEVEIEQP----YGLKFAKGRD------G--GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 83 ~~~~~~v~l~kP----lgl~~~~~~~------g--~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
--|.++|||.|- .||.+--++| | .+.|..|.|||-|+ |.++.||.|+.|-
T Consensus 6 IWEQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVN 67 (1027)
T KOG3580|consen 6 IWEQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVN 67 (1027)
T ss_pred hhhhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEc
Confidence 457899999965 4566644433 2 68999999999999 8899999999984
No 395
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=52.18 E-value=51 Score=26.13 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh-hchhHHHHHHHhh
Q 019871 266 NQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF-INENAINAIKSLF 328 (334)
Q Consensus 266 G~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~-~~~~ai~~~k~~~ 328 (334)
+...+++...-++++.+|+|+..+ .+|+..+..|.-.. ++-+.|++||++-
T Consensus 21 ~~~~~~l~~Al~~l~~~pdnP~~L------------A~~Qa~l~eyn~~RNaQSn~iKa~KD~~ 72 (80)
T PRK15326 21 DNLQTQVTEALDKLAAKPSDPALL------------AAYQSKLSEYNLYRNAQSNTVKVFKDID 72 (80)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556677888865421 37999999998777 7789999999863
No 396
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=51.52 E-value=24 Score=27.73 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=17.6
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 255 SYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 255 ~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
+.++|.++-..|+.++|+.+|+++|..
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 444455555557778888888877654
No 397
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=51.33 E-value=39 Score=20.48 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 254 ASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 254 a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
.|..+-.++.+.|+++.|+..|+.-.+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 56777788888899999888888776654
No 398
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=51.30 E-value=17 Score=37.02 Aligned_cols=54 Identities=19% Similarity=0.333 Sum_probs=33.7
Q ss_pred CCcceeEeecCCCceEEEeeCC--------CCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 93 QPYGLKFAKGRDGGTYIDAIAP--------GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 93 kPlgl~~~~~~~g~v~v~~~~~--------~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
.|.||.+ +.-||+|..... ++.|+++| +++||+|+.+- ..++.+...+..++..
T Consensus 96 ~~iGI~l---~t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsIN------G~~V~s~~DL~~iL~~ 157 (402)
T TIGR02860 96 QSIGVKL---NTKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKIN------GEKIKNMDDLANLINK 157 (402)
T ss_pred EEEEEEE---ecCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHHh
Confidence 5777877 345677755432 35566777 99999999983 3334444444454443
No 399
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=50.38 E-value=29 Score=26.41 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=10.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVL 242 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekAL 242 (334)
..|...-..|+|++|+.+|.+++
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHAL 33 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444443
No 400
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=50.32 E-value=63 Score=30.79 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=39.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 224 al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
.+.+.+..++||...+.-++-+|.+..-...+|.+ |...|++++|+.-|+-+-.+.|++-
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqL---lcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQL---LCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHH---HhhcchHHHHHHHHHHHhhcCcccc
Confidence 55667777777777777777777764323444444 4446777777777777777777643
No 401
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=49.64 E-value=17 Score=31.38 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=29.2
Q ss_pred CCcceeEeec--C---CCceEEEeeCCCCcccccccccc-CcEeeeec
Q 019871 93 QPYGLKFAKG--R---DGGTYIDAIAPGGSADKTGMFQV-GDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~--~---~g~v~v~~~~~~~~a~~~~~i~~-gD~v~~~s 134 (334)
..||+.+.-. . ..+..|..|.|++-|+++| +++ .|.|+.+.
T Consensus 26 g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~ 72 (138)
T PF04495_consen 26 GLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGID 72 (138)
T ss_dssp SSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEET
T ss_pred CCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEcc
Confidence 4678665332 3 4589999999999999999 676 79999974
No 402
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.21 E-value=93 Score=30.88 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHhh--ccCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCC--cchHHHHHHHHHHHHCCC
Q 019871 196 RVREIQMQNYMKKKEQ--KERREQD---LREGLQLYRTGKYEVAREKFESVLGS-KPTPE--ESSVASYNVACCYSKLNQ 267 (334)
Q Consensus 196 ~l~e~q~~~y~~~iel--~~~~~~~---~nlG~al~~~g~yeeAl~~fekALel-dP~~~--e~~~a~yNlA~ay~~lG~ 267 (334)
.+++..|..+.+-+.. +|+.... |..|..---.++-++-|+.+++.|+- ..++. +.+.+|-|+|-.|.+.++
T Consensus 51 ~i~d~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D 130 (412)
T COG5187 51 LIIDKCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMD 130 (412)
T ss_pred HHHHhhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh
Confidence 3344444444443322 4443222 34444444445566777777777733 22332 336899999999999999
Q ss_pred hHHHHHHHHHHHHc
Q 019871 268 VKAGLSALEDALLA 281 (334)
Q Consensus 268 ~eeAl~~lekAIel 281 (334)
.+.+.+++.+.++.
T Consensus 131 ~~ng~~~~~~~~~~ 144 (412)
T COG5187 131 IQNGFEWMRRLMRD 144 (412)
T ss_pred hhhHHHHHHHHHHH
Confidence 99999998876554
No 403
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.46 E-value=23 Score=27.60 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGS 244 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALel 244 (334)
..+..|...=+.|+|++|+.+|..|++.
T Consensus 8 ~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 8 FLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 3446777778889999999999999874
No 404
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=48.43 E-value=27 Score=27.95 Aligned_cols=38 Identities=34% Similarity=0.552 Sum_probs=24.4
Q ss_pred cceeEeecCCCceEEEeeCCCCcccc--------cc-ccccCcEeeee
Q 019871 95 YGLKFAKGRDGGTYIDAIAPGGSADK--------TG-MFQVGDKVLAT 133 (334)
Q Consensus 95 lgl~~~~~~~g~v~v~~~~~~~~a~~--------~~-~i~~gD~v~~~ 133 (334)
||..|... +|+.-|..|-+|.+-+- .| .+++||.|++|
T Consensus 3 LGAd~~~~-~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aI 49 (88)
T PF14685_consen 3 LGADFSYD-NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAI 49 (88)
T ss_dssp -SEEEEEE-TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEE
T ss_pred cceEEEEc-CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEE
Confidence 78889776 68888999999855442 22 57899999998
No 405
>PF13041 PPR_2: PPR repeat family
Probab=48.08 E-value=85 Score=21.26 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=22.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGS--KPT 247 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALel--dP~ 247 (334)
.+=..+.+.|++++|++.|++..+. .|+
T Consensus 8 ~li~~~~~~~~~~~a~~l~~~M~~~g~~P~ 37 (50)
T PF13041_consen 8 TLISGYCKAGKFEEALKLFKEMKKRGIKPD 37 (50)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 4446789999999999999999965 455
No 406
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=47.58 E-value=74 Score=33.24 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
.-+.-+|..|+|.++.-...=..+++|. +.++.-+|.|+....+|+||..+|.+
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaPS----~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAPS----PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4555678999999999999889999995 68999999999999999999999874
No 407
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=47.46 E-value=55 Score=28.34 Aligned_cols=65 Identities=14% Similarity=0.004 Sum_probs=50.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----C-------cchHHHHHHHHHHHHCCChHHHHHHHHHH----HHcCC
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTP-----E-------ESSVASYNVACCYSKLNQVKAGLSALEDA----LLAGY 283 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~-----~-------e~~~a~yNlA~ay~~lG~~eeAl~~lekA----Ielgp 283 (334)
.+|...++.+++-.++-+|++|+.+..+- . .....-.|+|..+...|+-+-.+++|+-| +.+-|
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiP 85 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIP 85 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhcc
Confidence 67888899999999999999999654322 0 01345689999999999999999999877 44555
Q ss_pred C
Q 019871 284 E 284 (334)
Q Consensus 284 ~ 284 (334)
.
T Consensus 86 Q 86 (140)
T PF10952_consen 86 Q 86 (140)
T ss_pred C
Confidence 4
No 408
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=47.44 E-value=31 Score=26.56 Aligned_cols=16 Identities=31% Similarity=0.189 Sum_probs=6.9
Q ss_pred CChHHHHHHHHHHHHc
Q 019871 266 NQVKAGLSALEDALLA 281 (334)
Q Consensus 266 G~~eeAl~~lekAIel 281 (334)
|++++|+..|..||+.
T Consensus 20 g~y~eA~~lY~~ale~ 35 (75)
T cd02684 20 GDAAAALSLYCSALQY 35 (75)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3444444444444443
No 409
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=47.39 E-value=4.3e+02 Score=29.13 Aligned_cols=86 Identities=14% Similarity=0.070 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHh-hccCH-----HH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHHHHCCChHH
Q 019871 199 EIQMQNYMKKKE-QKERR-----EQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTP-EESSVASYNVACCYSKLNQVKA 270 (334)
Q Consensus 199 e~q~~~y~~~ie-l~~~~-----~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~-~e~~~a~yNlA~ay~~lG~~ee 270 (334)
..+..-|.+++. .+|.. .. +...|..|-..|+.+.|-..|++|+..+=.. .+-+..|.+-|-.-....+++.
T Consensus 364 ~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~ 443 (835)
T KOG2047|consen 364 AEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEA 443 (835)
T ss_pred HHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHH
Confidence 445566766664 34432 22 3388888899999999999999999876432 2234567777766777788999
Q ss_pred HHHHHHHHHHcCCCC
Q 019871 271 GLSALEDALLAGYED 285 (334)
Q Consensus 271 Al~~lekAIelgp~~ 285 (334)
|++.+++|.-. |..
T Consensus 444 Al~lm~~A~~v-P~~ 457 (835)
T KOG2047|consen 444 ALKLMRRATHV-PTN 457 (835)
T ss_pred HHHHHHhhhcC-CCc
Confidence 99999999776 443
No 410
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=47.33 E-value=18 Score=22.34 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=15.6
Q ss_pred cCCcceeEeecCCCceEEEe
Q 019871 92 EQPYGLKFAKGRDGGTYIDA 111 (334)
Q Consensus 92 ~kPlgl~~~~~~~g~v~v~~ 111 (334)
..|.||.+. .+|.+||.+
T Consensus 2 ~~P~gvav~--~~g~i~VaD 19 (28)
T PF01436_consen 2 NYPHGVAVD--SDGNIYVAD 19 (28)
T ss_dssp SSEEEEEEE--TTSEEEEEE
T ss_pred cCCcEEEEe--CCCCEEEEE
Confidence 469999995 799999987
No 411
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=47.25 E-value=39 Score=25.47 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=7.5
Q ss_pred CChHHHHHHHHHHHHc
Q 019871 266 NQVKAGLSALEDALLA 281 (334)
Q Consensus 266 G~~eeAl~~lekAIel 281 (334)
|++++|+.+|..|++.
T Consensus 20 g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 20 GNYEEALELYKEALDY 35 (75)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4444444444444443
No 412
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.11 E-value=37 Score=26.44 Aligned_cols=29 Identities=10% Similarity=-0.018 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 253 VASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 253 ~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
..+-.+|.-+-+.|++++|+.+|.+||+.
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555666677779999999999999887
No 413
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.05 E-value=96 Score=31.80 Aligned_cols=77 Identities=9% Similarity=0.067 Sum_probs=49.2
Q ss_pred HHhhccCHHHHH-HHHHHHHHcC--CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCC----hHHHHHHHHHHHH
Q 019871 208 KKEQKERREQDL-REGLQLYRTG--KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ----VKAGLSALEDALL 280 (334)
Q Consensus 208 ~iel~~~~~~~~-nlG~al~~~g--~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~----~eeAl~~lekAIe 280 (334)
++..+|+...++ .+--++.+.+ ++..=++.++++++.||.+ -.+|..+=.++.+... ..+=++++.++|.
T Consensus 101 ~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RN---fh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~ 177 (421)
T KOG0529|consen 101 ALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRN---FHAWHYRRFVVEQAERSRNLEKEELEFTTKLIN 177 (421)
T ss_pred HHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccc---ccchHHHHHHHHHHhcccccchhHHHHHHHHHh
Confidence 445566665555 4555554443 3566777888888888877 3467666666655443 3566777788888
Q ss_pred cCCCCHH
Q 019871 281 AGYEDFK 287 (334)
Q Consensus 281 lgp~~~~ 287 (334)
-++.|+.
T Consensus 178 ~nfSNYs 184 (421)
T KOG0529|consen 178 DNFSNYS 184 (421)
T ss_pred ccchhhh
Confidence 8777766
No 414
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=46.79 E-value=27 Score=34.79 Aligned_cols=76 Identities=8% Similarity=0.013 Sum_probs=57.4
Q ss_pred hccCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCCcchHHHHH-HHHHHHHCCChHHHHHHHHHHHHcCCCCHH-
Q 019871 211 QKERREQDLREGLQL-YRTGKYEVAREKFESVLGSKPTPEESSVASYN-VACCYSKLNQVKAGLSALEDALLAGYEDFK- 287 (334)
Q Consensus 211 l~~~~~~~~nlG~al-~~~g~yeeAl~~fekALeldP~~~e~~~a~yN-lA~ay~~lG~~eeAl~~lekAIelgp~~~~- 287 (334)
.-+++...|..-..| .+.|.|.+--..|.+++...|.+. ..|.. -+.-|...++++.+-..+.++|.++|+.+.
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nv---dlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNV---DLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---eeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 446666666444444 456789999999999999999994 45644 333467789999999999999999999776
Q ss_pred HH
Q 019871 288 RV 289 (334)
Q Consensus 288 ~i 289 (334)
|+
T Consensus 179 w~ 180 (435)
T COG5191 179 WI 180 (435)
T ss_pred HH
Confidence 44
No 415
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.97 E-value=36 Score=35.87 Aligned_cols=46 Identities=17% Similarity=0.114 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~ 264 (334)
+..||.|..+...|+.-.|.+||.++....-.+ +..|..+|-|...
T Consensus 336 eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n---PrlWLRlAEcCim 381 (696)
T KOG2471|consen 336 EILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN---PRLWLRLAECCIM 381 (696)
T ss_pred hhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 445799999999999999999999999887777 5799999976543
No 416
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=45.66 E-value=86 Score=25.48 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPT 247 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~ 247 (334)
...+..|...+..|+|+.|.+...++-+..+.
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~ 91 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSDN 91 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 35668999999999999999999999877554
No 417
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=45.08 E-value=38 Score=26.28 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 253 VASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 253 ~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
..+...|.-+-..|++++|+.+|.+||+.
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556666667778899999999998887
No 418
>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]
Probab=44.96 E-value=35 Score=38.32 Aligned_cols=67 Identities=22% Similarity=0.349 Sum_probs=50.1
Q ss_pred EeecCCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhHHH
Q 019871 89 VEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLM 163 (334)
Q Consensus 89 v~l~kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V~l 163 (334)
.+...-||.-|-.+ --|.|..|.+||.+. |.+.+||.|+++ ++|-....--.+|...++.--..|.+
T Consensus 61 ~~r~~~lGFgfvag--rPviVr~VT~GGps~--GKL~PGDQIl~v----N~Epv~daprervIdlvRace~sv~l 127 (1298)
T KOG3552|consen 61 LQRNASLGFGFVAG--RPVIVRFVTEGGPSI--GKLQPGDQILAV----NGEPVKDAPRERVIDLVRACESSVNL 127 (1298)
T ss_pred hhccccccceeecC--CceEEEEecCCCCcc--ccccCCCeEEEe----cCcccccccHHHHHHHHHHHhhhcce
Confidence 33446788888554 589999999999988 889999999998 66666555566888877755444433
No 419
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=44.45 E-value=34 Score=26.46 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 019871 220 REGLQLYRTGKYEVAREKFESVLG 243 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALe 243 (334)
.+|...-+.|+|++|+.+|..+|+
T Consensus 11 ~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 11 RLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444444555555555444443
No 420
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=43.64 E-value=23 Score=29.94 Aligned_cols=33 Identities=36% Similarity=0.551 Sum_probs=23.5
Q ss_pred EEEeecCCcceeEeecCCCceEEEeeCCCCccccccccccCcEeee
Q 019871 87 YEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132 (334)
Q Consensus 87 ~~v~l~kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~ 132 (334)
|+|+| +..||...++.|++|.. ..+++||.|.+
T Consensus 24 ~~vtI---------~~~dG~~v~~~IP~Gpe----LiV~eG~~V~~ 56 (118)
T PF01333_consen 24 YEVTI---------ETSDGETVVETIPAGPE----LIVSEGQSVKA 56 (118)
T ss_dssp EEEEE---------ETTTSEEEEEEEESSS-----BS--TT-EETT
T ss_pred EEEEE---------ECCCCCEEEEecCCCCe----EEEcCCCEEec
Confidence 77766 45789999999999976 55889999987
No 421
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.80 E-value=1.4e+02 Score=29.85 Aligned_cols=63 Identities=24% Similarity=0.261 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH--HCCChHHHHHHHHHHHHc
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS--KLNQVKAGLSALEDALLA 281 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~--~lG~~eeAl~~lekAIel 281 (334)
.+..+..++..++|..|.+.|+..+..=|...+ ...+..++.+|. ..-++.+|.+.|++.++.
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 347788999999999999999999975233321 345667766664 566889999999998775
No 422
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=42.74 E-value=67 Score=30.29 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=17.3
Q ss_pred CCChHHHHHHHHHHHHcCCC
Q 019871 265 LNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 265 lG~~eeAl~~lekAIelgp~ 284 (334)
.++...|+.+|++|++++|.
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDK 210 (230)
T ss_pred cccHHHHHHHHHHHHHhCCC
Confidence 35778999999999999987
No 423
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.14 E-value=1.8e+02 Score=31.57 Aligned_cols=60 Identities=18% Similarity=0.122 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CCCc---------chHHHHHHH-HHHHHCCChHHHHHHHHHH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKP--------TPEE---------SSVASYNVA-CCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP--------~~~e---------~~~a~yNlA-~ay~~lG~~eeAl~~lekA 278 (334)
-.+|.+....+++.-|.+||.+|-.+.. .+.+ .....+|+| .||.++|+++++++.|.+.
T Consensus 670 ~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 670 RQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 3999999999999999999999865531 1110 012345666 6889999999999888766
No 424
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.11 E-value=64 Score=33.04 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=50.4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCC--hHHHHHHHHHHHHcCCCCHH
Q 019871 227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ--VKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 227 ~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~--~eeAl~~lekAIelgp~~~~ 287 (334)
+..-.++-+...+.++..+|+. ..+|+.+.-++.+.+. +..=+..|+++++.+|.++.
T Consensus 87 k~~~ld~eL~~~~~~L~~npks---Y~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh 146 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKS---YGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFH 146 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccccc
Confidence 3346788889999999999998 6899999999998775 58889999999999998765
No 425
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=41.59 E-value=1.1e+02 Score=24.19 Aligned_cols=47 Identities=19% Similarity=0.081 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhccCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhc
Q 019871 198 REIQMQNYMKKKEQKERREQDL----REGLQLYRTGKYEVAREKFESVLGS 244 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~----nlG~al~~~g~yeeAl~~fekALel 244 (334)
...++....++++..++.++.| .+..++...|+|.++++.-.+=+++
T Consensus 22 ~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 22 TQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777776665 6778899999999999886655544
No 426
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=40.83 E-value=48 Score=27.83 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 232 eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
-.|+++|.++..+.|.. +..+|.+|.=+--.--|++++.-++++|..
T Consensus 61 l~sve~~s~a~~Lsp~~---A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDS---AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHhHHHHHHHhccChhH---HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 35889999999999997 678888888766666788888888888765
No 427
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=40.35 E-value=1.5e+02 Score=31.64 Aligned_cols=75 Identities=12% Similarity=0.050 Sum_probs=60.3
Q ss_pred HHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 204 NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 204 ~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
+..++|+.+|.+-+.|..-...++...+++.-+.|++.+...|.. +.+|---.-.-.+..+++.-.+.|.+||..
T Consensus 8 ~~~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s---~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 8 NPRERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSS---PRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred CHHHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCC---cHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 346788999999999988888888889999999999999999998 456665555566667888887888887654
No 428
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=39.26 E-value=3.2e+02 Score=25.33 Aligned_cols=61 Identities=16% Similarity=0.053 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcC-------CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHHHHHHHHHHHHcCC
Q 019871 218 DLREGLQLYRTG-------KYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 218 ~~nlG~al~~~g-------~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~eeAl~~lekAIelgp 283 (334)
.+.+|..+..-. +...|+..|.++....- ..+.+++|.+|.. -.++++|+.+|++|.+.+.
T Consensus 151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~-----~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGN-----PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcC-----HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 456666665431 22367777777776652 3467777766654 2266777777777777766
No 429
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=39.26 E-value=50 Score=25.93 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVL 242 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekAL 242 (334)
++|+.+-+.|+.++|+.+|++++
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi 35 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGL 35 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHH
Confidence 55555555555555555555554
No 430
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.62 E-value=84 Score=30.99 Aligned_cols=48 Identities=17% Similarity=0.055 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 230 KYEVAREKFESVLGSKPTPEES-SVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 230 ~yeeAl~~fekALeldP~~~e~-~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
+.++|+..|++++++.++-++- -.|+-++--.+.++|++++-++.|.+
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~q 90 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQ 90 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 4555555555555555543220 02333334444555555555444443
No 431
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.72 E-value=1e+02 Score=30.78 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=32.2
Q ss_pred HhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 242 LGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 242 LeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
|..+|-+ ..++.+++.++..+|+.+.|-+.+++||-.
T Consensus 33 l~~~PyH---idtLlqls~v~~~~gd~~~A~~lleRALf~ 69 (360)
T PF04910_consen 33 LQKNPYH---IDTLLQLSEVYRQQGDHAQANDLLERALFA 69 (360)
T ss_pred HHHCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667776 679999999999999999999999999654
No 432
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=37.59 E-value=1.4e+02 Score=27.29 Aligned_cols=60 Identities=13% Similarity=-0.005 Sum_probs=48.3
Q ss_pred HHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Q 019871 202 MQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (334)
Q Consensus 202 ~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~ 264 (334)
+..|.+++.+.|..-..+ .+|......|+.=+|+-+|-+++-..--+ +.|.-|+...+.+
T Consensus 2 ~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf---~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 2 ERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF---PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHH
Confidence 467889999999986665 99999999999999999999999665444 5789999988888
No 433
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=37.57 E-value=62 Score=27.48 Aligned_cols=31 Identities=39% Similarity=0.576 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~ 248 (334)
.+.+|..+...|++++|+.+|-+||.+-|+-
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 4589999999999999999999999999984
No 434
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.81 E-value=87 Score=32.00 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLG 243 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALe 243 (334)
++.|.+++.++||.+|++.|...|-
T Consensus 168 YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 168 YYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999884
No 435
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=36.79 E-value=1.3e+02 Score=29.52 Aligned_cols=48 Identities=19% Similarity=0.088 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 228 ~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
....-+|+..++.++..+|.+ ...-..+...|..+|-.+.|...|..-
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n---~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHN---YQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 445678999999999999998 578889999999999999999999754
No 436
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=35.93 E-value=5.5e+02 Score=27.17 Aligned_cols=65 Identities=20% Similarity=0.174 Sum_probs=49.9
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCC--c-chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 219 LREGLQLY-RTGKYEVAREKFESVLGSKPTPE--E-SSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 219 ~nlG~al~-~~g~yeeAl~~fekALeldP~~~--e-~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
+.+|..|+ +..++++|..+++|++.+...+. + .-.+.+-++-+|.+.+... |+..++++|+.--.
T Consensus 63 l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 63 LRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 48998886 89999999999999987764431 1 1245566778888888777 99999999987433
No 437
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=35.76 E-value=1.1e+02 Score=30.52 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 019871 220 REGLQLYRTGKYEVAREKFESVLG 243 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALe 243 (334)
..+...-..++|++|+.+|+.|++
T Consensus 15 ~kA~~eD~a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 15 KKAIDEDNAKNYEEALRLYQNALE 38 (439)
T ss_pred HHHhhhcchhchHHHHHHHHHHHH
Confidence 444444566777777777777665
No 438
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=34.90 E-value=2.6e+02 Score=22.97 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=25.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 227 ~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
+.+.....+..++..+..++.+ +..+.-+..+|++. +.++.+..++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~---~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSEN---PALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccc---hhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3456666666666666665543 33455555555543 3344445544
No 439
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.51 E-value=59 Score=33.54 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 252 SVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 252 ~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
+.+..+.|.||-.++++++|+.+|+++|.+
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 457789999999999999999999999876
No 440
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.29 E-value=86 Score=33.90 Aligned_cols=68 Identities=10% Similarity=0.058 Sum_probs=50.8
Q ss_pred HHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871 205 YMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 205 y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp 283 (334)
+.+++++.+++...|.+ ..+.|+++.|.+. |.+.+.. .-|-.+|.+....|++..|.+++.+|-+++-
T Consensus 630 ~e~AL~~s~D~d~rFel---al~lgrl~iA~~l---a~e~~s~-----~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~ 697 (794)
T KOG0276|consen 630 KEQALELSTDPDQRFEL---ALKLGRLDIAFDL---AVEANSE-----VKWRQLGDAALSAGELPLASECFLRARDLGS 697 (794)
T ss_pred hHhhhhcCCChhhhhhh---hhhcCcHHHHHHH---HHhhcch-----HHHHHHHHHHhhcccchhHHHHHHhhcchhh
Confidence 34556666665555554 4578999999776 4443333 5799999999999999999999999977654
No 441
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=33.87 E-value=95 Score=19.20 Aligned_cols=29 Identities=17% Similarity=0.023 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC
Q 019871 234 AREKFESVLGSKPTPEESSVASYNVACCYSKL 265 (334)
Q Consensus 234 Al~~fekALeldP~~~e~~~a~yNlA~ay~~l 265 (334)
.++...++|..+|.+ ..+|..+--++..+
T Consensus 2 El~~~~~~l~~~pkn---ys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKN---YSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCccc---ccHHHHHHHHHHHc
Confidence 466778888899988 67888877666543
No 442
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.59 E-value=1.1e+02 Score=28.52 Aligned_cols=52 Identities=23% Similarity=0.218 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHh-----cCCCCCcchHHHHHHHHHH-HHCCChHHHHHHHHHHHHcC
Q 019871 231 YEVAREKFESVLG-----SKPTPEESSVASYNVACCY-SKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 231 yeeAl~~fekALe-----ldP~~~e~~~a~yNlA~ay-~~lG~~eeAl~~lekAIelg 282 (334)
.+.|..+|++|++ +.|.+|.+--...|.+..| -.+|+.++|++..++|++..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 3677778888774 5687753333444555544 56999999999999997753
No 443
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.59 E-value=1.5e+02 Score=30.05 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH---hcCC---------------------------CCCcchHHHHHHHHHHHHCCCh
Q 019871 219 LREGLQLYRTGKYEVAREKFESVL---GSKP---------------------------TPEESSVASYNVACCYSKLNQV 268 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekAL---eldP---------------------------~~~e~~~a~yNlA~ay~~lG~~ 268 (334)
++.|..++-.++|.+....|+.|= +.+. ..-|....++.+|.-|+..+++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Confidence 388888888888888776665442 2211 1113456778888889999998
Q ss_pred HHHHHHHHHHHHc
Q 019871 269 KAGLSALEDALLA 281 (334)
Q Consensus 269 eeAl~~lekAIel 281 (334)
+.|..-++||.+.
T Consensus 142 ~~ArVEfnRan~r 154 (449)
T COG3014 142 AKARVEFNRANER 154 (449)
T ss_pred hhhHHHHHHHHHH
Confidence 8888888887654
No 444
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.22 E-value=4.9e+02 Score=25.59 Aligned_cols=78 Identities=12% Similarity=0.038 Sum_probs=64.1
Q ss_pred HHHH-HHhhccCHHHHH-HHHHHHHHcCCHH-HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871 204 NYMK-KKEQKERREQDL-REGLQLYRTGKYE-VAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (334)
Q Consensus 204 ~y~~-~iel~~~~~~~~-nlG~al~~~g~ye-eAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe 280 (334)
.|.. .++.+|+..+.+ ++-......|++. .-++...++|..|..+ .++|..+--|....+.++.-+.+..+-|+
T Consensus 99 ~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKN---YHaWshRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 99 EYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKN---YHAWSHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccc---hhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4544 446677776665 6667777888988 8899999999999988 68999999999999999999999999999
Q ss_pred cCCC
Q 019871 281 AGYE 284 (334)
Q Consensus 281 lgp~ 284 (334)
.+-.
T Consensus 176 ~Di~ 179 (318)
T KOG0530|consen 176 EDIR 179 (318)
T ss_pred Hhhh
Confidence 8654
No 445
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=31.83 E-value=90 Score=23.70 Aligned_cols=28 Identities=14% Similarity=-0.005 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 254 ASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 254 a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
-+...|.-.-..|++++|+..|.+|++.
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555668888888888888876
No 446
>PRK03760 hypothetical protein; Provisional
Probab=31.77 E-value=52 Score=27.58 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=24.2
Q ss_pred CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeee
Q 019871 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132 (334)
Q Consensus 93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~ 132 (334)
+|.-+ -....+..||-++..| -+++.| |.+||+|.-
T Consensus 79 ~P~~~--~~~~~~a~~VLEl~aG-~~~~~g-i~~Gd~v~~ 114 (117)
T PRK03760 79 KPWRI--YVPKKPARYIIEGPVG-KIRVLK-VEVGDEIEW 114 (117)
T ss_pred CCccc--cCCCccceEEEEeCCC-hHHHcC-CCCCCEEEE
Confidence 66542 2334568899997665 455566 999999853
No 447
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=31.53 E-value=3.3e+02 Score=27.63 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--cchHHHHHHHHHHH--HCCChHHHHHHHHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPE--ESSVASYNVACCYS--KLNQVKAGLSALED 277 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~--e~~~a~yNlA~ay~--~lG~~eeAl~~lek 277 (334)
.++..+++.++|..|.+.|++++...+... .....+.+++.+|. ..-++++|.+.|++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 667789999999999999999997765321 12456677777775 46678999999995
No 448
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=31.51 E-value=94 Score=23.33 Aligned_cols=17 Identities=41% Similarity=0.284 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHcCCC
Q 019871 268 VKAGLSALEDALLAGYE 284 (334)
Q Consensus 268 ~eeAl~~lekAIelgp~ 284 (334)
|.+|++.|.+++...++
T Consensus 29 Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 29 YKEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHHHhccCCC
Confidence 34455555666655544
No 449
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.98 E-value=1.1e+02 Score=32.18 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH----HHHHHHHc
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS----ALEDALLA 281 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~----~lekAIel 281 (334)
++++...+..|+|.++.+..++++--+|.+ ..+-+-.|.|+-++|--.|+-- +|.-|-++
T Consensus 456 l~la~ea~~kGdyrW~a~lln~~VfAdp~n---~~Ar~L~Ad~lEQLgYqaE~A~wRn~yLtgA~EL 519 (655)
T COG2015 456 LELAREAFDKGDYRWAAELLNQAVFADPGN---KAARELQADALEQLGYQAESATWRNFYLTGAYEL 519 (655)
T ss_pred HHHHHHHHhcccchHHHHHHhhHHhcCCcc---HHHHHHHHhHHHHhhhhhccchhhhhHHHhHHHH
Confidence 488999999999999999999999999998 5788888999999997655543 34445454
No 450
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=30.98 E-value=3.2e+02 Score=23.02 Aligned_cols=68 Identities=18% Similarity=0.031 Sum_probs=48.1
Q ss_pred HHHHHHHhhccCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 203 QNYMKKKEQKERREQDL--REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 203 ~~y~~~iel~~~~~~~~--nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
...-+.++..++.++.. -+-..++..|+|++|+...+.. | . +..--.+|.|-.++|..+++...+.+-
T Consensus 25 ~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~-~---pdlepw~ALce~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 25 NTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----C-Y---PDLEPWLALCEWRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----C-C---chHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 34445566666655554 5667889999999998875544 2 2 346677889999999998887777554
No 451
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=29.84 E-value=87 Score=22.79 Aligned_cols=37 Identities=16% Similarity=0.439 Sum_probs=27.4
Q ss_pred HhcChhhHHHhcChHHHHHHHHHHHhh--hchhHHHHHHHh
Q 019871 289 VRTDPDLENLRASEEFDVLLKRFDESF--INENAINAIKSL 327 (334)
Q Consensus 289 i~~Dpdl~~Lr~dp~F~~lL~~~~e~~--~~~~ai~~~k~~ 327 (334)
+..||+|+.... .|-.+|.+|++.+ -...|+.+++.+
T Consensus 5 ~~~dpELDqFMe--aYc~~L~kykeeL~~p~~EA~~f~~~i 43 (52)
T PF03791_consen 5 IGADPELDQFME--AYCDMLVKYKEELQRPFQEAMEFCREI 43 (52)
T ss_pred CCCCccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888887764 7888998888877 445787777664
No 452
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=29.50 E-value=36 Score=34.63 Aligned_cols=47 Identities=28% Similarity=0.466 Sum_probs=38.4
Q ss_pred CcceeEeec--CCCceEEEeeCCCCccccccccccCcEeeeecccccccccc
Q 019871 94 PYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWP 143 (334)
Q Consensus 94 Plgl~~~~~--~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~ 143 (334)
=|||.+.-+ |+.-|.|..|-+|-.||.++.+.+||.|+.|- |.++-+
T Consensus 97 GLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVN---G~dL~~ 145 (506)
T KOG3551|consen 97 GLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVN---GEDLRD 145 (506)
T ss_pred cceEEeecCcccCCceehhHhccccccccccceeeccEEEEec---chhhhh
Confidence 478888554 56689999999999999999999999999883 544443
No 453
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=29.43 E-value=2.3e+02 Score=33.06 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeld-----P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
+++...+..++...|+..+.++.++. |+.|.-+....|++..+..+++++.|+.+++.|+++
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 77777788889999999999988763 444433455689999999999999999999999994
No 454
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=29.07 E-value=1e+02 Score=29.86 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 019871 201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~ 249 (334)
+...-...+.++|.++..+ ..|.+|.++|-+.-|++.++..++.-|+.+
T Consensus 200 al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 200 ALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 3455556778888877665 999999999999999999999999999984
No 455
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=28.91 E-value=2.4e+02 Score=20.84 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cchHHHHH--HHHHHHHCCChHHHHHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPE-ESSVASYN--VACCYSKLNQVKAGLSA 274 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~-e~~~a~yN--lA~ay~~lG~~eeAl~~ 274 (334)
.+..|..++..|+|=+|-+.++.+-...|... ....++.+ .|....+.|+..-|...
T Consensus 2 ~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 2 ALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 45778999999999999999999997665441 01123333 44455677888877654
No 456
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=28.61 E-value=1.7e+02 Score=29.01 Aligned_cols=31 Identities=16% Similarity=0.046 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 254 ASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 254 a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
...-.|..|...|.+.+|++.+++++.++|-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL 311 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL 311 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh
Confidence 4555677788999999999999999999985
No 457
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=28.56 E-value=2.6e+02 Score=29.58 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC------cchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPE------ESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~------e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
-.+..+...+-.+++..|....+.+.......+ ..+..+|-.|..+...|+.+.|+..|.
T Consensus 363 ~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 363 LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345888899999999999999888776532211 126789999999999999999999997
No 458
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=28.49 E-value=1.1e+02 Score=31.54 Aligned_cols=48 Identities=8% Similarity=-0.012 Sum_probs=35.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 223 ~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
....+.|+++.|++. |-+++ + ..-|-.+|-.....|+++-|.++|+++
T Consensus 326 eLAl~lg~L~~A~~~---a~~~~--~---~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 326 ELALQLGNLDIALEI---AKELD--D---PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHCT-HHHHHHH---CCCCS--T---HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHhcCCHHHHHHH---HHhcC--c---HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 344578888888765 22222 2 468999999999999999999999887
No 459
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=28.25 E-value=82 Score=23.46 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=21.8
Q ss_pred hhhhccceEEEeec-CCcceeEeecC--CCceEEEe
Q 019871 79 EQEEKYEEYEVEIE-QPYGLKFAKGR--DGGTYIDA 111 (334)
Q Consensus 79 ~~~~~~~~~~v~l~-kPlgl~~~~~~--~g~v~v~~ 111 (334)
+|.+.. -|.|+|+ =|.||-|=... ..|+||+-
T Consensus 26 ~F~EG~-MYLvaL~dYP~GiWFFNE~~~~dG~FVep 60 (62)
T PF10781_consen 26 PFNEGT-MYLVALEDYPAGIWFFNEKDSPDGTFVEP 60 (62)
T ss_pred eccCcE-EEEEEcCcCCcceEEEecCCCCCcEEeee
Confidence 344443 3999999 89999883332 33999974
No 460
>PRK10708 hypothetical protein; Provisional
Probab=28.21 E-value=76 Score=23.64 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=21.5
Q ss_pred hhhccceEEEeec-CCcceeEeecCCC--ceEEEe
Q 019871 80 QEEKYEEYEVEIE-QPYGLKFAKGRDG--GTYIDA 111 (334)
Q Consensus 80 ~~~~~~~~~v~l~-kPlgl~~~~~~~g--~v~v~~ 111 (334)
|.+.. -|.|+|+ =|.||-|=...++ |+||+-
T Consensus 27 F~EG~-MyLvaL~dYP~GiWFFNE~~~~~G~FVep 60 (62)
T PRK10708 27 FSEGT-MYLVSLEDYPLGIWFFNEAGHQDGIFVEK 60 (62)
T ss_pred ccCcE-EEEEEcCcCCCceEEEeccCCCCceEecc
Confidence 33333 3999999 8999988433333 899974
No 461
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.01 E-value=3.7e+02 Score=24.93 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
|.-++-+.+.++-++|+..|...-+..-..- ...+....|.+.+..|+-.+|+.+|..+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~Y-pvLA~mr~at~~a~kgdta~AV~aFdei 120 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSY-PVLARMRAATLLAQKGDTAAAVAAFDEI 120 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 3333344444444444444444333222210 0233444444444444444444444444
No 462
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=27.97 E-value=2.6e+02 Score=24.65 Aligned_cols=46 Identities=17% Similarity=0.060 Sum_probs=37.2
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871 203 QNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (334)
Q Consensus 203 ~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~ 248 (334)
+-..+.+...|......+++.++...|+.++|.....++..+-|.+
T Consensus 132 ~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 132 EWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3344455556766666789999999999999999999999999954
No 463
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=27.85 E-value=87 Score=31.62 Aligned_cols=57 Identities=30% Similarity=0.380 Sum_probs=43.0
Q ss_pred hhhccceEEEeec-CC---cceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeeccc
Q 019871 80 QEEKYEEYEVEIE-QP---YGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAV 136 (334)
Q Consensus 80 ~~~~~~~~~v~l~-kP---lgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~ 136 (334)
.++..++-+|+|. +| +||.+.-+.. =-|.|..|-+.-.||-+|++-|||-|+.|-.+
T Consensus 49 ~p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi 111 (505)
T KOG3549|consen 49 PPMESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGI 111 (505)
T ss_pred CCccCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccE
Confidence 3455677899998 55 4466632211 16899999999999999999999999998543
No 464
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.98 E-value=6.3e+02 Score=26.25 Aligned_cols=128 Identities=12% Similarity=0.017 Sum_probs=75.2
Q ss_pred HHHHHhhhhHHHHhhcccchhhhhchhcHHHHH-HHhhchhhhhh--hHHHHHHHHHHHHHhhccCH----HHHHHHHHH
Q 019871 152 YTIRQRVGPLLMKMQKRYGKMEQTGELSEKEII-RAERNSGVISN--RVREIQMQNYMKKKEQKERR----EQDLREGLQ 224 (334)
Q Consensus 152 sai~~R~G~V~lkLek~~~aie~~~~l~ek~~~-~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~----~~~~nlG~a 224 (334)
.|+.+......+++++...+++.+..=..|+-+ ++....|.++. |....+..+|.++-..=.+. ..+.|.-.+
T Consensus 117 ~WvE~~~~~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~V 196 (466)
T KOG0686|consen 117 KWVETNNKKAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILV 196 (466)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 456767777778888888888755544455533 44444555544 33344556666622111111 112255555
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-------CCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 225 LYRTGKYEVAREKFESVLGSK-------PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 225 l~~~g~yeeAl~~fekALeld-------P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
-..+|+|..-+..-.+|...- +..+ +.+..-.|.+...++++..|.+++-.+..-
T Consensus 197 SI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~--~kl~C~agLa~L~lkkyk~aa~~fL~~~~~ 258 (466)
T KOG0686|consen 197 SIYMGNWGHVLSYISKAESTPDANENLAQEVP--AKLKCAAGLANLLLKKYKSAAKYFLLAEFD 258 (466)
T ss_pred HHhhcchhhhhhHHHHHHhCchhhhhHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 667788877777777766541 1111 245666677778888999998888777443
No 465
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.86 E-value=2.7e+02 Score=32.26 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=67.7
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH-HH-Hh
Q 019871 213 ERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF-KR-VR 290 (334)
Q Consensus 213 ~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~-~~-i~ 290 (334)
|+.+..-..|+.+|..|.|+.|--+|..+ .-|-.+|..+..+|+|+.|+..-+||=...-+-- -. ..
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~~v-----------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYSNV-----------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 33444448899999999999998777543 2488899999999999999999999833322100 00 00
Q ss_pred cChhh--------HHHhcChHHHHHHHHHHHhhhchhHHHHHHHhhc
Q 019871 291 TDPDL--------ENLRASEEFDVLLKRFDESFINENAINAIKSLFG 329 (334)
Q Consensus 291 ~Dpdl--------~~Lr~dp~F~~lL~~~~e~~~~~~ai~~~k~~~~ 329 (334)
...+| .-+-.-.+..++++.|+..--.+.-|..+-..+|
T Consensus 1261 d~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1261 DKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred chhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 11111 1111124666777777776666666766666655
No 466
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=26.45 E-value=1.8e+02 Score=27.65 Aligned_cols=52 Identities=17% Similarity=0.108 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHh-----cCCCCCcchHHHHHHHHHH-HHCCChHHHHHHHHHHHHcC
Q 019871 231 YEVAREKFESVLG-----SKPTPEESSVASYNVACCY-SKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 231 yeeAl~~fekALe-----ldP~~~e~~~a~yNlA~ay-~~lG~~eeAl~~lekAIelg 282 (334)
-+.|.++|++|++ +.|.+|.+--...|.+..| --+++.++|++..++|++-.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5588888888875 5577764333344555444 45799999998888777654
No 467
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=26.34 E-value=99 Score=24.88 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=16.0
Q ss_pred EEEeeCCCCccccccccccCcEeeee
Q 019871 108 YIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 108 ~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
.|.+|.+|.. .....+++||+|++-
T Consensus 39 ~VvavG~g~~-~~~~~Vk~GD~Vl~~ 63 (91)
T PRK14533 39 EVVAVGKLDD-EEDFDIKVGDKVIFS 63 (91)
T ss_pred EEEEECCCCc-cccccccCCCEEEEc
Confidence 4455555533 224569999999984
No 468
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=26.33 E-value=81 Score=27.04 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=15.7
Q ss_pred EEEeeCCCCccccccccccCcEeeee
Q 019871 108 YIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 108 ~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
||-|+..| -+.+.+ ++|||+|.-.
T Consensus 97 yvLEl~~G-~~~~~~-i~vGd~v~~~ 120 (126)
T COG1430 97 YVLELPAG-WAARLG-IKVGDRVEFR 120 (126)
T ss_pred EEEEecCC-chhhcC-CccCCEEEec
Confidence 66665444 444455 8999998764
No 469
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=26.28 E-value=5.4e+02 Score=29.30 Aligned_cols=67 Identities=21% Similarity=0.138 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchH----HHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSV----ASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~----a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
.+.+-++.+|.++|+|+|-+++|.-|++.-|++|+.+. .-|.+=-+..+ +...|+...--|+..-|.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 623 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPE 623 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcc
Confidence 34458889999999999999999999999999975332 22222222222 345666666666666665
No 470
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=25.66 E-value=7.2e+02 Score=25.88 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=39.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871 224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (334)
Q Consensus 224 al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI 279 (334)
...+.|.++.|+++-+++-+.-|+- ..++...=-..+..|+++.||+.++...
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l---~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQL---PWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCC---chHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3467888888888888888888886 3455554455677788888888887553
No 471
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=24.69 E-value=2.2e+02 Score=33.25 Aligned_cols=89 Identities=20% Similarity=0.094 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc-----CCCCHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGS-------KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA-----GYEDFK 287 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALel-------dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel-----gp~~~~ 287 (334)
.++..++++|++++|+..-.+|.-+ ++-+ ....|-|++......++...|+..+.+|.++ +|.-+.
T Consensus 978 ~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~--t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~ 1055 (1236)
T KOG1839|consen 978 SLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN--TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPP 1055 (1236)
T ss_pred HHHHHHhhhcchHHHHHhcccceeeechhccCCCHH--HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCc
Confidence 7788899999999999988777644 3222 2578999999999999999999999999775 454444
Q ss_pred HHhcChhhHHHhc-ChHHHHHHHH
Q 019871 288 RVRTDPDLENLRA-SEEFDVLLKR 310 (334)
Q Consensus 288 ~i~~Dpdl~~Lr~-dp~F~~lL~~ 310 (334)
.+..+.-+..|.. ..+|+.++..
T Consensus 1056 ~a~~~~nle~l~~~v~e~d~al~~ 1079 (1236)
T KOG1839|consen 1056 TALSFINLELLLLGVEEADTALRY 1079 (1236)
T ss_pred hhhhhhHHHHHHhhHHHHHHHHHH
Confidence 4555554444422 2444444443
No 472
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.63 E-value=1.1e+03 Score=27.69 Aligned_cols=61 Identities=13% Similarity=-0.046 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 214 ~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
+++-+-.+|.+..+.|...+||+.|-+| -|| ..|.+.-.+..+.|+|++=+.+|..|-+..
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika--dDp------s~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA--DDP------SNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc--CCc------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 4455669999999999999999998765 334 468888888899999999999999886543
No 473
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.63 E-value=8.8e+02 Score=25.92 Aligned_cols=80 Identities=19% Similarity=-0.001 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871 201 QMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe 280 (334)
+.|-|.+-++..|.-..+..--.--.+-+..+.|-..|++-+-..|+- ..|..-|-.-.+-|+..-|-..|++|++
T Consensus 160 aRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v----~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 160 ARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKV----SNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccH----HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 345566666666654333333333345567777888888887777773 5777777778888999999999999988
Q ss_pred cCCC
Q 019871 281 AGYE 284 (334)
Q Consensus 281 lgp~ 284 (334)
.=-+
T Consensus 236 ~~~~ 239 (677)
T KOG1915|consen 236 FLGD 239 (677)
T ss_pred Hhhh
Confidence 6333
No 474
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=24.38 E-value=7.5e+02 Score=25.04 Aligned_cols=64 Identities=17% Similarity=0.095 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFE--SVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fe--kALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe 280 (334)
+..|..+--.|+.|+|..|-.++= +++-.+|+-. +..+.+..=..-...-+++-|++.|.|--+
T Consensus 130 ~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n-~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 130 ETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRN-YLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchh-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345688888999999999987654 4444344321 134455444445556789999999987633
No 475
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=23.81 E-value=5.6e+02 Score=26.16 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871 255 SYNVACCYSKLNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 255 ~yNlA~ay~~lG~~eeAl~~lekAIelgp 283 (334)
-..+|.|-.++|+..||++-++.-.+--|
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 34678999999999999999888766555
No 476
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=23.35 E-value=1.3e+02 Score=23.23 Aligned_cols=27 Identities=7% Similarity=-0.058 Sum_probs=19.1
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 255 SYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 255 ~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
....|+-.-..|++++|+.+|..+|+.
T Consensus 9 l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 9 LIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444444558899999999999886
No 477
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=23.33 E-value=1.7e+02 Score=29.98 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHh-cCCCCCcchHHHHHHHHHHHHCCC
Q 019871 231 YEVAREKFESVLG-SKPTPEESSVASYNVACCYSKLNQ 267 (334)
Q Consensus 231 yeeAl~~fekALe-ldP~~~e~~~a~yNlA~ay~~lG~ 267 (334)
...|+.++++|.. -+| ..|.++|-+|.-+|+
T Consensus 334 ~~~Al~yL~kA~d~ddP------etWv~vAEa~I~LGN 365 (404)
T PF12753_consen 334 IKKALEYLKKAQDEDDP------ETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHHS--T------THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCh------hHHHHHHHHHhhhhc
Confidence 5678888888874 233 489999999999886
No 478
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=23.24 E-value=4.6e+02 Score=22.19 Aligned_cols=66 Identities=21% Similarity=0.020 Sum_probs=42.4
Q ss_pred HHHHHHhhccCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 204 NYMKKKEQKERREQDL--REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 204 ~y~~~iel~~~~~~~~--nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
.....++..+.-++.. -+...+...|+|++|+ ...... .. +..--..|.|-.++|--+++..+|.+
T Consensus 27 tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL---l~~~~~--~~---pdL~p~~AL~a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 27 TIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL---LLPQCH--CY---PDLEPWAALCAWKLGLASALESRLTR 94 (116)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH---HHHTTS-------GGGHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH---HhcccC--CC---ccHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3344555555545543 6677889999999993 233322 22 33555678899999999999999984
No 479
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=23.08 E-value=5.3e+02 Score=28.46 Aligned_cols=80 Identities=10% Similarity=-0.042 Sum_probs=41.4
Q ss_pred HHHHHHHhhccCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHH---HHHHHHHHHCCChHHHHHHHHHH
Q 019871 203 QNYMKKKEQKERR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVAS---YNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 203 ~~y~~~iel~~~~-~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~---yNlA~ay~~lG~~eeAl~~lekA 278 (334)
.-|.+.+++..-- ....|-|+.+.+..-|++|.+.|++.|.+.|--. ....| --....-..--+.+.|-..|++|
T Consensus 498 ~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~-v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN-VYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3455555544332 2334666666666667777777777776654321 01222 22222222223566667777777
Q ss_pred HHcCC
Q 019871 279 LLAGY 283 (334)
Q Consensus 279 Ielgp 283 (334)
|+.-|
T Consensus 577 L~~Cp 581 (835)
T KOG2047|consen 577 LDGCP 581 (835)
T ss_pred HhcCC
Confidence 76544
No 480
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.03 E-value=5e+02 Score=29.68 Aligned_cols=266 Identities=20% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcccccCcccccccc-cccccccccccccccccchhhhcccccccccCCcccCCCchhhhccceEEEeecC
Q 019871 15 PPLPRTNQNPFLFSQNSHVWFKKN-CFLSASGCSCNTLLVKPSVFVAKASETEAQASPEAESGSEEQEEKYEEYEVEIEQ 93 (334)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k 93 (334)
++||-...|+.|..++.+.--..+ --|++++++-...+.-+.. +.+.+. .++++.| +++. +.+-
T Consensus 784 ~~lP~~~~~a~ll~pP~p~~~l~nwPLl~~s~~~fe~~~~~~~~-----~~av~~---~~e~~~g------~e~~-~~e~ 848 (1202)
T KOG0292|consen 784 PSLPEVDPNASLLQPPVPIMPLENWPLLSVSKGTFEGALLSRSS-----SLAVDR---DDEGDWG------EEGW-DVEL 848 (1202)
T ss_pred CCCCCCCCcccccCCCCccccccCCchhhhhhhhhhHhhhhhcc-----cCcccc---ccccccc------ccch-hhhh
Q ss_pred CcceeEeecCC-----------C-ceEEEeeCCCCccccccccccCcEeeeecccccccccc-----------ccchhhH
Q 019871 94 PYGLKFAKGRD-----------G-GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWP-----------AAEYGRT 150 (334)
Q Consensus 94 Plgl~~~~~~~-----------g-~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~-----------~~~~~~v 150 (334)
|+|=.-...+| | ++-=..++|+....+.. .-|-.++-.-.++.. +|. +-+|+..
T Consensus 849 ~l~ed~~~~~d~~g~~~~dE~~gWdv~d~~l~pe~~~~~~~--~~~~~~~p~~~~~~~-~W~~nS~L~adhvaAGsf~tA 925 (1202)
T KOG0292|consen 849 MLGEDGILFNDGAGEVGEDEGGGWDVGDLDLPPEEDTPKGA--DDGEFVVPAQGMSVS-IWSNNSPLAADHVAAGSFETA 925 (1202)
T ss_pred ccccccccccccccccCcccccCcCcccccCCccccccccc--cccceecCCCCCcch-hccccCcchhhhhhcCchHHH
Q ss_pred HHHHHHhhhhH-HHHhhcccchhhhhchhcHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhccCHHHHH----HHHHHH
Q 019871 151 MYTIRQRVGPL-LMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKERREQDL----REGLQL 225 (334)
Q Consensus 151 ~sai~~R~G~V-~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~~l~e~q~~~y~~~iel~~~~~~~~----nlG~al 225 (334)
+.++....|-+ ..-++.++..+-...... ++++-.......-.+..+..+-.+.+-.-+-..... ++|..+
T Consensus 926 ~~lL~dqvgvv~f~p~Kt~fl~iy~~sR~~----l~~~~~~~~~~~~~R~~se~~~~~~~P~v~~~l~~l~~kl~~gy~l 1001 (1202)
T KOG0292|consen 926 MRLLHDQVGVVNFGPLKTHFLKIYAGSRTY----LRATPCLPVSLYPVRNWSETSSKQGLPAVGFKLSQLNKKLQKGYKL 1001 (1202)
T ss_pred HHHHHhhhcceecccHHhhhhhhcccccee----ccCCCCcccccccccccccchhhccCCcccccHHHHHHHHHHHHhh
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC--------------------------------------------------------C
Q 019871 226 YRTGKYEVAREKFESVLGSKPTP--------------------------------------------------------E 249 (334)
Q Consensus 226 ~~~g~yeeAl~~fekALeldP~~--------------------------------------------------------~ 249 (334)
...|+|.+|+++|...|-.-|-. .
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Q ss_pred cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcCh
Q 019871 250 ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASE 302 (334)
Q Consensus 250 e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp 302 (334)
....++.-.=..+.+++++..|-....+-++++|.....-+....+..--.+|
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~eknp 1134 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEKNP 1134 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCc
No 481
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=22.49 E-value=72 Score=31.67 Aligned_cols=36 Identities=19% Similarity=0.532 Sum_probs=29.4
Q ss_pred ecCCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeee
Q 019871 91 IEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 91 l~kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
..||.-+++ -||||..+..++-+- +.+.+||+|+++
T Consensus 121 a~~pv~~~y-----~gvyv~~v~~~~~~~--gkl~~gD~i~av 156 (342)
T COG3480 121 AGKPVEVTY-----AGVYVLSVIDNSPFK--GKLEAGDTIIAV 156 (342)
T ss_pred cCCceEEEE-----eeEEEEEccCCcchh--ceeccCCeEEee
Confidence 346776666 379999998888876 779999999998
No 482
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.48 E-value=75 Score=26.43 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=24.8
Q ss_pred cccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871 118 ADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (334)
Q Consensus 118 a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~ 155 (334)
.+|...|++||+|+.....+-.++-.++.|.-...+.+
T Consensus 28 d~krr~ik~GD~IiF~~~~l~v~V~~vr~Y~tF~~mlr 65 (111)
T COG4043 28 DPKRRQIKPGDKIIFNGDKLKVEVIDVRVYDTFEEMLR 65 (111)
T ss_pred CHhhcCCCCCCEEEEcCCeeEEEEEEEeehhHHHHHHH
Confidence 45666799999999875444445555666665555444
No 483
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.39 E-value=1.9e+02 Score=26.68 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=15.7
Q ss_pred HHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 260 CCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 260 ~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.++.+.|.+++|.+-|++-+. +|+...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 445566666666666666666 555443
No 484
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=22.01 E-value=1.3e+02 Score=24.82 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=14.4
Q ss_pred EEeeCCCCccccccccccCcEeee
Q 019871 109 IDAIAPGGSADKTGMFQVGDKVLA 132 (334)
Q Consensus 109 v~~~~~~~~a~~~~~i~~gD~v~~ 132 (334)
|.+|.+|... ....+++||+|++
T Consensus 49 VvAVG~G~~~-~~~~Vk~GD~Vl~ 71 (100)
T PTZ00414 49 VVAVAAATKD-WTPTVKVGDTVLL 71 (100)
T ss_pred EEEECCCCcc-ccceecCCCEEEE
Confidence 3444554322 2346999999998
No 485
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=21.83 E-value=1.6e+02 Score=22.56 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=11.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 019871 220 REGLQLYRTGKYEVAREKFESVLG 243 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALe 243 (334)
..|...-..|+|++|+.+|.++|+
T Consensus 11 ~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 11 VQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 444444455555555555444443
No 486
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=21.79 E-value=2.4e+02 Score=28.35 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=40.2
Q ss_pred HHHHHHcCCH-HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 222 GLQLYRTGKY-EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 222 G~al~~~g~y-eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.+.+...|=. ++.+..++..|..=|+-...+..|.=+|..+...|.+++.|..|++||..|..-.+
T Consensus 109 Cl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPie 175 (353)
T PF15297_consen 109 CLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIE 175 (353)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHH
Confidence 3344445543 35666677777666764211234444455566677788888888888888776443
No 487
>PRK02693 apocytochrome f; Reviewed
Probab=21.69 E-value=1.2e+02 Score=29.56 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=26.6
Q ss_pred EEEeecCCcceeEeecCCCceEEEeeCCCCccccccccccCcEeee
Q 019871 87 YEVEIEQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLA 132 (334)
Q Consensus 87 ~~v~l~kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~ 132 (334)
|+|+|. ..||...++.|.+|.. ..++.||.|.+
T Consensus 218 ~~vtI~---------~~dG~~v~~~iP~Gpe----liV~eG~~v~~ 250 (312)
T PRK02693 218 YVVTIT---------TEDGEAVTETIPAGPE----LIVKEGDTVEA 250 (312)
T ss_pred eEEEEE---------cCCCCEEEEecCCCCe----EEEecCcEEec
Confidence 777763 4689999999999966 45888999988
No 488
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=21.36 E-value=4.2e+02 Score=25.85 Aligned_cols=64 Identities=14% Similarity=0.051 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
....+..++..+..++|+..++..+...+..-++-....-+|-.+...|+.+-|+..|+...+.
T Consensus 216 ~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 216 LREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3466888999999999999999877654443222345566788888999999999999988665
No 489
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=20.85 E-value=81 Score=31.60 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=42.6
Q ss_pred HHHHHhhccCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Q 019871 205 YMKKKEQKERREQDL--REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (334)
Q Consensus 205 y~~~iel~~~~~~~~--nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~ 263 (334)
|.+.+.+.|.+.+.| --...++..++++.|-..|.++|+++|+++.....|+.+-..|.
T Consensus 130 ~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~El~yi 190 (435)
T COG5191 130 FAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRMELMYI 190 (435)
T ss_pred HHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHH
Confidence 344556778777665 45678899999999999999999999999633334444444443
No 490
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=20.29 E-value=8.2e+02 Score=24.42 Aligned_cols=30 Identities=7% Similarity=-0.006 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 252 SVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 252 ~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
+.+||..|..+...+++-+||..|+.|.++
T Consensus 248 A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~ 277 (353)
T cd09243 248 AYAYCYHGETLLAKDKCGEAIRSLQESEKL 277 (353)
T ss_pred HHHHHHHHHHhHhcchHHHHHHHHHHHHHH
Confidence 568888888888889999999999999874
No 491
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=20.11 E-value=2e+02 Score=29.21 Aligned_cols=18 Identities=33% Similarity=0.918 Sum_probs=12.9
Q ss_pred CCcceeEeecCCCceEEEe
Q 019871 93 QPYGLKFAKGRDGGTYIDA 111 (334)
Q Consensus 93 kPlgl~~~~~~~g~v~v~~ 111 (334)
+||||.|.. ..|.+||..
T Consensus 116 RPLGl~f~~-~ggdL~VaD 133 (376)
T KOG1520|consen 116 RPLGIRFDK-KGGDLYVAD 133 (376)
T ss_pred CcceEEecc-CCCeEEEEe
Confidence 999999955 444666653
Done!