Query 019871
Match_columns 334
No_of_seqs 317 out of 1640
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.5 4.5E-14 1.6E-18 115.6 12.4 100 185-287 14-116 (126)
2 4gco_A Protein STI-1; structur 99.5 8.2E-14 2.8E-18 114.0 12.5 115 208-327 5-124 (126)
3 4gyw_A UDP-N-acetylglucosamine 99.5 6.5E-13 2.2E-17 139.9 16.6 157 154-315 11-172 (723)
4 3gyz_A Chaperone protein IPGC; 99.5 6.9E-13 2.4E-17 113.2 13.7 108 173-284 26-136 (151)
5 3vtx_A MAMA; tetratricopeptide 99.4 1E-12 3.5E-17 110.8 11.7 159 154-317 7-170 (184)
6 2hr2_A Hypothetical protein; a 99.4 6.9E-13 2.4E-17 115.8 10.5 86 198-286 27-136 (159)
7 3vtx_A MAMA; tetratricopeptide 99.4 4.5E-12 1.5E-16 106.9 14.9 129 155-286 42-175 (184)
8 3gyz_A Chaperone protein IPGC; 99.4 5.5E-13 1.9E-17 113.8 8.5 108 204-316 24-132 (151)
9 4ga2_A E3 SUMO-protein ligase 99.4 8.1E-13 2.8E-17 110.7 8.8 87 198-287 47-135 (150)
10 4gcn_A Protein STI-1; structur 99.4 1.9E-12 6.4E-17 105.7 10.3 63 220-285 13-75 (127)
11 2hr2_A Hypothetical protein; a 99.4 1.1E-12 3.6E-17 114.6 8.9 100 215-317 11-131 (159)
12 2pl2_A Hypothetical conserved 99.4 7.7E-12 2.6E-16 110.4 13.8 128 156-287 43-186 (217)
13 3urz_A Uncharacterized protein 99.3 1E-11 3.4E-16 108.9 13.5 64 221-287 60-123 (208)
14 4gyw_A UDP-N-acetylglucosamine 99.3 5E-12 1.7E-16 133.2 13.5 127 185-316 10-139 (723)
15 2h6f_A Protein farnesyltransfe 99.3 9.4E-12 3.2E-16 121.3 14.3 131 154-287 99-235 (382)
16 2vgx_A Chaperone SYCD; alterna 99.3 2.1E-11 7E-16 102.2 14.3 87 196-285 35-122 (148)
17 1zu2_A Mitochondrial import re 99.3 3.6E-12 1.2E-16 111.1 9.8 87 196-285 16-124 (158)
18 2pl2_A Hypothetical conserved 99.3 1.1E-11 3.8E-16 109.3 12.6 155 155-315 8-178 (217)
19 4gcn_A Protein STI-1; structur 99.3 7.4E-12 2.5E-16 102.1 10.0 98 187-284 11-115 (127)
20 4ga2_A E3 SUMO-protein ligase 99.3 1.2E-11 4.1E-16 103.5 11.5 87 199-288 14-101 (150)
21 3upv_A Heat shock protein STI1 99.3 1.5E-11 5E-16 98.1 11.5 83 198-283 20-103 (126)
22 3rkv_A Putative peptidylprolyl 99.3 1.4E-11 4.8E-16 102.8 11.2 73 212-287 59-132 (162)
23 2xcb_A PCRH, regulatory protei 99.3 2.9E-11 9.8E-16 99.4 13.0 86 198-286 34-120 (142)
24 2vgx_A Chaperone SYCD; alterna 99.3 1.5E-11 5.3E-16 103.0 10.9 108 204-316 9-117 (148)
25 3upv_A Heat shock protein STI1 99.3 6.1E-11 2.1E-15 94.4 13.1 98 216-318 5-102 (126)
26 1hxi_A PEX5, peroxisome target 99.3 1.5E-11 5E-16 99.7 9.3 85 198-285 33-118 (121)
27 4i17_A Hypothetical protein; T 99.3 6.8E-11 2.3E-15 103.2 14.2 130 154-284 9-149 (228)
28 3sz7_A HSC70 cochaperone (SGT) 99.3 3.3E-11 1.1E-15 100.7 11.3 87 198-287 27-114 (164)
29 2xcb_A PCRH, regulatory protei 99.2 1.9E-11 6.4E-16 100.5 9.0 108 204-316 6-114 (142)
30 2h6f_A Protein farnesyltransfe 99.2 2.5E-11 8.4E-16 118.4 11.1 129 155-287 134-275 (382)
31 1p5q_A FKBP52, FK506-binding p 99.2 1.8E-10 6.3E-15 109.0 16.6 100 185-287 148-265 (336)
32 1a17_A Serine/threonine protei 99.2 1.6E-10 5.6E-15 94.2 13.7 87 198-287 29-116 (166)
33 3k9i_A BH0479 protein; putativ 99.2 3.9E-11 1.3E-15 95.3 9.7 84 201-287 9-96 (117)
34 2fbn_A 70 kDa peptidylprolyl i 99.2 2E-10 6.8E-15 98.8 14.0 68 217-287 90-157 (198)
35 3uq3_A Heat shock protein STI1 99.2 5.4E-10 1.8E-14 96.9 16.6 153 154-317 81-236 (258)
36 4i17_A Hypothetical protein; T 99.2 2.1E-10 7.2E-15 100.0 13.4 117 196-316 21-145 (228)
37 1hxi_A PEX5, peroxisome target 99.2 1.7E-10 5.8E-15 93.3 11.1 94 217-315 19-112 (121)
38 3urz_A Uncharacterized protein 99.2 1.3E-10 4.5E-15 101.7 11.0 152 157-315 9-184 (208)
39 1hh8_A P67PHOX, NCF-2, neutrop 99.2 4.8E-10 1.6E-14 96.0 14.3 129 156-285 10-154 (213)
40 1qqe_A Vesicular transport pro 99.2 3E-10 1E-14 104.5 13.8 166 154-320 79-272 (292)
41 4abn_A Tetratricopeptide repea 99.2 1.3E-10 4.5E-15 115.1 12.0 154 154-314 139-318 (474)
42 3mkr_A Coatomer subunit epsilo 99.1 7.5E-10 2.6E-14 102.8 15.7 148 155-312 133-289 (291)
43 2pzi_A Probable serine/threoni 99.1 5.3E-11 1.8E-15 123.4 8.7 154 156-314 437-602 (681)
44 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 3.7E-10 1.3E-14 111.6 14.2 100 185-287 269-386 (457)
45 3sz7_A HSC70 cochaperone (SGT) 99.1 3.9E-10 1.3E-14 94.1 12.1 94 217-315 13-106 (164)
46 2xev_A YBGF; tetratricopeptide 99.1 5E-10 1.7E-14 88.4 11.8 89 199-287 19-111 (129)
47 1xnf_A Lipoprotein NLPI; TPR, 99.1 1.7E-09 5.9E-14 95.1 16.1 99 186-287 45-146 (275)
48 2kc7_A BFR218_protein; tetratr 99.1 3.1E-10 1.1E-14 86.5 9.7 84 219-315 4-88 (99)
49 2kat_A Uncharacterized protein 99.1 2.6E-10 9.1E-15 89.6 9.4 81 201-284 4-85 (115)
50 3q49_B STIP1 homology and U bo 99.1 3.7E-10 1.3E-14 90.1 10.4 84 198-284 25-109 (137)
51 2lni_A Stress-induced-phosphop 99.1 5.2E-10 1.8E-14 87.6 10.6 85 199-286 33-118 (133)
52 2l6j_A TPR repeat-containing p 99.1 3E-10 1E-14 87.1 8.9 67 216-285 5-71 (111)
53 3ma5_A Tetratricopeptide repea 99.1 2E-10 6.9E-15 89.5 8.0 70 212-284 3-73 (100)
54 4eqf_A PEX5-related protein; a 99.1 2.4E-09 8.1E-14 99.2 16.5 155 156-316 137-309 (365)
55 1elw_A TPR1-domain of HOP; HOP 99.1 1.3E-09 4.5E-14 83.0 12.3 87 198-287 20-107 (118)
56 1w3b_A UDP-N-acetylglucosamine 99.1 8.4E-10 2.9E-14 103.4 13.5 86 199-287 220-306 (388)
57 3rkv_A Putative peptidylprolyl 99.1 4.1E-10 1.4E-14 93.8 10.1 94 217-315 13-124 (162)
58 3as5_A MAMA; tetratricopeptide 99.1 3.3E-09 1.1E-13 86.8 15.2 131 154-287 10-145 (186)
59 2dba_A Smooth muscle cell asso 99.1 1.3E-09 4.5E-14 87.0 12.5 86 199-287 45-134 (148)
60 4abn_A Tetratricopeptide repea 99.1 2.2E-10 7.5E-15 113.4 9.5 156 155-315 105-285 (474)
61 1w3b_A UDP-N-acetylglucosamine 99.1 1.6E-09 5.4E-14 101.5 14.8 155 156-315 139-298 (388)
62 3q49_B STIP1 homology and U bo 99.1 1.7E-09 5.8E-14 86.1 12.5 97 215-316 9-105 (137)
63 2kck_A TPR repeat; tetratricop 99.1 1.2E-09 3.9E-14 82.8 10.7 85 198-285 22-110 (112)
64 2q7f_A YRRB protein; TPR, prot 99.1 5.1E-09 1.7E-13 90.3 16.0 157 154-315 59-220 (243)
65 2vyi_A SGTA protein; chaperone 99.0 3.1E-09 1.1E-13 82.2 12.8 87 198-287 28-115 (131)
66 3qky_A Outer membrane assembly 99.0 1.6E-09 5.4E-14 96.8 12.3 129 156-284 19-180 (261)
67 2kck_A TPR repeat; tetratricop 99.0 1.8E-09 6E-14 81.8 10.7 67 218-287 9-77 (112)
68 2vq2_A PILW, putative fimbrial 99.0 5.7E-09 1.9E-13 88.5 14.8 87 199-286 59-147 (225)
69 1wao_1 Serine/threonine protei 99.0 2.5E-10 8.6E-15 113.8 7.3 114 196-312 20-134 (477)
70 2q7f_A YRRB protein; TPR, prot 99.0 5.2E-09 1.8E-13 90.2 14.3 132 152-287 23-160 (243)
71 3qky_A Outer membrane assembly 99.0 2.7E-09 9.2E-14 95.3 12.5 92 195-286 28-131 (261)
72 2vsy_A XCC0866; transferase, g 99.0 3.1E-09 1.1E-13 106.3 14.2 83 201-286 42-125 (568)
73 3u4t_A TPR repeat-containing p 99.0 7.4E-10 2.5E-14 97.7 8.6 128 156-287 41-177 (272)
74 2ho1_A Type 4 fimbrial biogene 99.0 8.4E-09 2.9E-13 90.1 14.9 130 155-287 40-176 (252)
75 2fo7_A Synthetic consensus TPR 99.0 7.2E-09 2.4E-13 79.9 12.9 64 220-286 40-103 (136)
76 1qqe_A Vesicular transport pro 99.0 2.7E-09 9.3E-14 98.1 12.2 161 154-315 39-226 (292)
77 2e2e_A Formate-dependent nitri 99.0 1.7E-09 5.9E-14 90.7 10.0 86 198-286 60-149 (177)
78 3uq3_A Heat shock protein STI1 99.0 3E-09 1E-13 92.1 11.8 122 158-283 111-238 (258)
79 3as5_A MAMA; tetratricopeptide 99.0 4.5E-09 1.5E-13 86.0 12.2 130 154-286 44-178 (186)
80 1fch_A Peroxisomal targeting s 99.0 7.9E-09 2.7E-13 94.9 15.1 113 198-315 197-312 (368)
81 2ho1_A Type 4 fimbrial biogene 99.0 1.6E-08 5.3E-13 88.4 16.2 157 154-315 73-236 (252)
82 3u4t_A TPR repeat-containing p 99.0 1.1E-09 3.6E-14 96.7 8.6 154 157-315 8-169 (272)
83 1na3_A Designed protein CTPR2; 99.0 4.7E-09 1.6E-13 77.6 10.8 68 217-287 11-78 (91)
84 2if4_A ATFKBP42; FKBP-like, al 99.0 7.7E-10 2.6E-14 105.0 7.9 68 217-287 232-299 (338)
85 4eqf_A PEX5-related protein; a 99.0 2.9E-09 1E-13 98.6 11.6 127 158-287 183-316 (365)
86 1hh8_A P67PHOX, NCF-2, neutrop 99.0 8.1E-09 2.8E-13 88.3 13.3 84 198-286 22-105 (213)
87 1ihg_A Cyclophilin 40; ppiase 99.0 3.6E-09 1.2E-13 102.2 12.4 87 198-287 239-342 (370)
88 1na0_A Designed protein CTPR3; 99.0 1.2E-08 4.1E-13 78.2 12.8 86 199-287 26-112 (125)
89 3hym_B Cell division cycle pro 99.0 5.2E-09 1.8E-13 94.0 12.4 112 199-315 108-220 (330)
90 2fo7_A Synthetic consensus TPR 99.0 2.7E-08 9.4E-13 76.6 14.8 126 156-284 5-135 (136)
91 2lni_A Stress-induced-phosphop 98.9 7.1E-09 2.4E-13 81.0 11.4 95 216-315 17-111 (133)
92 1p5q_A FKBP52, FK506-binding p 98.9 2.5E-09 8.4E-14 101.2 10.3 105 209-315 140-257 (336)
93 2e2e_A Formate-dependent nitri 98.9 8.4E-09 2.9E-13 86.4 12.3 110 201-315 29-142 (177)
94 2pzi_A Probable serine/threoni 98.9 1.4E-09 4.8E-14 112.8 9.0 112 198-315 449-561 (681)
95 2c2l_A CHIP, carboxy terminus 98.9 2.8E-09 9.5E-14 98.1 10.0 86 197-285 19-105 (281)
96 2xev_A YBGF; tetratricopeptide 98.9 1.6E-08 5.6E-13 79.5 13.0 96 218-315 5-103 (129)
97 1elw_A TPR1-domain of HOP; HOP 98.9 1E-08 3.4E-13 78.0 11.2 95 216-315 5-99 (118)
98 3ieg_A DNAJ homolog subfamily 98.9 6E-08 2.1E-12 87.6 18.3 130 154-287 73-223 (359)
99 3hym_B Cell division cycle pro 98.9 3.4E-08 1.1E-12 88.6 16.5 156 155-315 128-297 (330)
100 1xnf_A Lipoprotein NLPI; TPR, 98.9 1.3E-08 4.4E-13 89.4 13.2 114 197-315 20-138 (275)
101 2vq2_A PILW, putative fimbrial 98.9 3.2E-08 1.1E-12 83.8 15.2 131 155-288 45-184 (225)
102 3ieg_A DNAJ homolog subfamily 98.9 2.3E-08 8E-13 90.3 15.2 131 154-287 39-189 (359)
103 2dba_A Smooth muscle cell asso 98.9 1.3E-08 4.6E-13 81.1 12.0 110 216-327 29-142 (148)
104 3cv0_A Peroxisome targeting si 98.9 1.8E-08 6.2E-13 90.3 14.0 114 197-315 153-267 (327)
105 1dce_A Protein (RAB geranylger 98.9 2.1E-08 7.2E-13 102.5 15.9 145 185-332 64-240 (567)
106 3mkr_A Coatomer subunit epsilo 98.9 3.9E-08 1.3E-12 91.1 16.3 128 154-288 103-236 (291)
107 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.3E-08 4.5E-13 89.6 12.4 65 220-284 152-216 (225)
108 2vyi_A SGTA protein; chaperone 98.9 1.4E-08 4.9E-13 78.4 11.1 95 217-316 14-108 (131)
109 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 4.7E-09 1.6E-13 103.6 10.2 107 208-316 260-379 (457)
110 2fbn_A 70 kDa peptidylprolyl i 98.9 2.9E-08 9.8E-13 85.2 13.9 96 218-315 41-149 (198)
111 2y4t_A DNAJ homolog subfamily 98.9 6.4E-08 2.2E-12 91.5 17.4 159 156-316 181-357 (450)
112 1elr_A TPR2A-domain of HOP; HO 98.9 1E-08 3.5E-13 79.4 9.7 86 199-284 21-111 (131)
113 2y4t_A DNAJ homolog subfamily 98.9 3E-08 1E-12 93.8 14.9 131 154-287 96-246 (450)
114 3fp2_A TPR repeat-containing p 98.9 2E-08 6.8E-13 97.0 13.8 156 155-315 246-405 (537)
115 1a17_A Serine/threonine protei 98.9 2.4E-08 8.3E-13 81.1 12.1 94 217-315 15-108 (166)
116 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.4E-08 8E-13 88.0 12.8 89 198-286 20-130 (225)
117 2c2l_A CHIP, carboxy terminus 98.9 1.1E-08 3.7E-13 94.2 10.9 96 216-316 5-100 (281)
118 2vsy_A XCC0866; transferase, g 98.9 1.4E-08 4.7E-13 101.6 12.6 130 154-287 25-163 (568)
119 1fch_A Peroxisomal targeting s 98.9 2.5E-08 8.5E-13 91.6 13.2 88 197-287 79-167 (368)
120 2r5s_A Uncharacterized protein 98.9 2E-08 6.8E-13 85.0 11.6 76 203-279 95-171 (176)
121 3qou_A Protein YBBN; thioredox 98.8 3.9E-09 1.3E-13 97.2 7.0 126 157-285 122-252 (287)
122 2r5s_A Uncharacterized protein 98.8 3.2E-08 1.1E-12 83.7 12.0 125 157-285 11-141 (176)
123 1elr_A TPR2A-domain of HOP; HO 98.8 2.5E-08 8.4E-13 77.2 10.0 95 217-316 6-107 (131)
124 4g1t_A Interferon-induced prot 98.8 4.1E-08 1.4E-12 93.8 13.2 176 156-331 251-460 (472)
125 3edt_B KLC 2, kinesin light ch 98.8 3.7E-08 1.2E-12 86.0 11.2 126 154-282 45-199 (283)
126 2ifu_A Gamma-SNAP; membrane fu 98.8 3.7E-08 1.3E-12 91.1 11.7 172 154-327 78-273 (307)
127 2xpi_A Anaphase-promoting comp 98.8 1.1E-07 3.7E-12 93.5 15.5 112 199-315 390-502 (597)
128 3fp2_A TPR repeat-containing p 98.8 1.1E-08 3.9E-13 98.8 8.3 126 157-285 281-411 (537)
129 1na0_A Designed protein CTPR3; 98.8 1.1E-07 3.8E-12 72.7 12.2 94 217-315 11-104 (125)
130 2gw1_A Mitochondrial precursor 98.8 1.9E-07 6.3E-12 89.3 16.3 87 196-285 20-106 (514)
131 2xpi_A Anaphase-promoting comp 98.7 9.4E-08 3.2E-12 94.0 14.0 159 154-316 409-578 (597)
132 3ulq_A Response regulator aspa 98.7 1.1E-07 3.6E-12 89.6 13.2 128 153-283 144-295 (383)
133 3cv0_A Peroxisome targeting si 98.7 1.4E-07 4.7E-12 84.5 13.3 87 198-287 37-124 (327)
134 1ouv_A Conserved hypothetical 98.7 1.7E-07 5.9E-12 83.6 13.6 76 201-282 97-180 (273)
135 3dra_A Protein farnesyltransfe 98.7 2E-07 6.7E-12 88.7 14.4 139 185-329 68-231 (306)
136 3nf1_A KLC 1, kinesin light ch 98.7 1.6E-07 5.5E-12 83.4 12.4 127 154-283 71-226 (311)
137 1ihg_A Cyclophilin 40; ppiase 98.7 8.3E-08 2.8E-12 92.6 11.2 95 217-316 225-335 (370)
138 1ouv_A Conserved hypothetical 98.7 1.8E-07 6.3E-12 83.4 12.6 79 199-283 131-217 (273)
139 2gw1_A Mitochondrial precursor 98.7 1E-07 3.5E-12 91.1 11.6 157 156-315 308-476 (514)
140 3k9i_A BH0479 protein; putativ 98.7 1.4E-08 4.8E-13 80.4 4.5 85 227-316 2-89 (117)
141 2ond_A Cleavage stimulation fa 98.7 2E-07 6.9E-12 85.8 12.9 86 199-286 81-168 (308)
142 3qou_A Protein YBBN; thioredox 98.7 1.5E-07 5.2E-12 86.5 12.0 125 156-281 155-284 (287)
143 1zu2_A Mitochondrial import re 98.7 3.8E-08 1.3E-12 85.7 7.1 88 225-315 12-118 (158)
144 3ulq_A Response regulator aspa 98.6 2.3E-07 7.8E-12 87.3 12.5 157 158-316 109-292 (383)
145 2if4_A ATFKBP42; FKBP-like, al 98.6 4E-08 1.4E-12 93.1 7.3 98 217-316 181-292 (338)
146 2v5f_A Prolyl 4-hydroxylase su 98.6 1.2E-07 4E-12 75.1 8.6 74 214-287 4-81 (104)
147 2ond_A Cleavage stimulation fa 98.6 4E-07 1.4E-11 83.8 13.2 113 199-315 33-161 (308)
148 2l6j_A TPR repeat-containing p 98.6 1.5E-08 5.1E-13 77.5 2.8 80 198-277 20-103 (111)
149 3nf1_A KLC 1, kinesin light ch 98.6 3E-07 1E-11 81.7 11.6 128 154-281 29-182 (311)
150 2ifu_A Gamma-SNAP; membrane fu 98.6 1.3E-07 4.5E-12 87.3 9.6 160 154-315 38-222 (307)
151 1dce_A Protein (RAB geranylger 98.6 1.3E-07 4.6E-12 96.6 10.4 100 185-287 108-227 (567)
152 3q15_A PSP28, response regulat 98.6 6.6E-07 2.3E-11 84.2 14.1 128 154-284 143-293 (378)
153 3rjv_A Putative SEL1 repeat pr 98.6 9.3E-07 3.2E-11 77.5 13.7 169 155-327 21-209 (212)
154 4g1t_A Interferon-induced prot 98.5 4.6E-07 1.6E-11 86.5 12.2 82 231-315 316-399 (472)
155 3edt_B KLC 2, kinesin light ch 98.5 3.9E-07 1.3E-11 79.3 10.3 128 154-281 87-281 (283)
156 3dss_A Geranylgeranyl transfer 98.5 3.3E-06 1.1E-10 81.3 17.4 141 186-329 66-238 (331)
157 1wao_1 Serine/threonine protei 98.5 1.7E-08 6E-13 100.4 1.2 127 157-286 11-155 (477)
158 3q7a_A Farnesyltransferase alp 98.5 8.3E-07 2.8E-11 86.2 11.3 164 163-329 65-253 (349)
159 2kc7_A BFR218_protein; tetratr 98.4 1.6E-07 5.6E-12 71.1 4.9 77 198-285 16-94 (99)
160 4a1s_A PINS, partner of inscut 98.4 9.6E-07 3.3E-11 82.5 10.8 131 154-284 128-295 (411)
161 3ro3_A PINS homolog, G-protein 98.4 2.4E-06 8.2E-11 67.6 11.4 62 220-281 94-158 (164)
162 3dra_A Protein farnesyltransfe 98.4 1.8E-06 6.2E-11 82.0 12.5 85 200-287 51-145 (306)
163 3q15_A PSP28, response regulat 98.4 1.1E-06 3.9E-11 82.7 10.9 158 157-316 106-289 (378)
164 4f3v_A ESX-1 secretion system 98.4 8.4E-07 2.9E-11 83.8 9.9 134 158-296 108-253 (282)
165 2kat_A Uncharacterized protein 98.4 7.6E-07 2.6E-11 69.5 7.9 79 232-315 2-80 (115)
166 2qfc_A PLCR protein; TPR, HTH, 98.4 1E-06 3.5E-11 80.3 9.6 85 198-282 131-226 (293)
167 1na3_A Designed protein CTPR2; 98.4 1.8E-06 6.2E-11 63.4 9.0 66 198-266 25-91 (91)
168 3bee_A Putative YFRE protein; 98.4 1.6E-06 5.6E-11 68.0 9.2 69 213-284 3-75 (93)
169 3u3w_A Transcriptional activat 98.4 5.6E-07 1.9E-11 82.1 7.4 95 190-284 121-228 (293)
170 3sf4_A G-protein-signaling mod 98.4 4.2E-06 1.4E-10 77.1 13.3 131 154-284 89-259 (406)
171 2qfc_A PLCR protein; TPR, HTH, 98.4 1.1E-05 3.8E-10 73.4 15.8 97 219-316 119-224 (293)
172 3sf4_A G-protein-signaling mod 98.4 3.9E-06 1.3E-10 77.3 12.7 131 154-284 129-299 (406)
173 3dss_A Geranylgeranyl transfer 98.3 4.7E-06 1.6E-10 80.2 13.3 100 185-287 109-228 (331)
174 3rjv_A Putative SEL1 repeat pr 98.3 2.3E-06 7.9E-11 74.9 10.2 97 186-286 87-202 (212)
175 3ro3_A PINS homolog, G-protein 98.3 4E-06 1.4E-10 66.3 10.6 65 218-282 52-119 (164)
176 3gw4_A Uncharacterized protein 98.3 3E-06 1E-10 71.0 10.2 128 154-281 28-176 (203)
177 3u3w_A Transcriptional activat 98.3 2.2E-06 7.7E-11 78.0 8.9 96 186-281 157-266 (293)
178 1pc2_A Mitochondria fission pr 98.3 3.2E-06 1.1E-10 73.1 9.0 83 203-287 19-106 (152)
179 3ro2_A PINS homolog, G-protein 98.2 6E-06 2.1E-10 73.0 10.7 63 220-282 228-293 (338)
180 4a1s_A PINS, partner of inscut 98.2 9.4E-06 3.2E-10 75.8 12.4 82 198-282 64-156 (411)
181 3gw4_A Uncharacterized protein 98.2 2.9E-05 9.8E-10 64.9 13.7 85 198-282 42-137 (203)
182 3q7a_A Farnesyltransferase alp 98.2 2.6E-05 9E-10 75.6 15.2 85 200-287 72-160 (349)
183 3ro2_A PINS homolog, G-protein 98.2 1.3E-05 4.4E-10 70.9 11.3 87 198-284 21-115 (338)
184 4f3v_A ESX-1 secretion system 98.2 2.5E-06 8.4E-11 80.6 6.7 114 201-316 121-236 (282)
185 2xm6_A Protein corresponding t 98.1 1.3E-05 4.5E-10 78.2 11.7 93 186-284 330-435 (490)
186 2ooe_A Cleavage stimulation fa 98.1 2.8E-05 9.5E-10 76.7 14.1 83 201-286 257-355 (530)
187 1xi4_A Clathrin heavy chain; a 98.1 4.1E-05 1.4E-09 85.8 15.0 121 146-284 1036-1166(1630)
188 3ly7_A Transcriptional activat 98.0 0.00024 8.1E-09 69.5 18.0 64 220-287 282-345 (372)
189 1klx_A Cysteine rich protein B 98.0 6.6E-05 2.3E-09 61.7 12.0 78 201-284 44-129 (138)
190 3n71_A Histone lysine methyltr 98.0 3.9E-05 1.3E-09 77.3 12.6 90 199-288 326-434 (490)
191 2ooe_A Cleavage stimulation fa 98.0 2.8E-05 9.7E-10 76.7 10.9 85 200-286 304-390 (530)
192 3qww_A SET and MYND domain-con 98.0 2.8E-05 9.6E-10 77.2 10.8 83 199-281 315-411 (433)
193 2xm6_A Protein corresponding t 98.0 8.8E-05 3E-09 72.4 14.2 60 218-282 150-217 (490)
194 3ma5_A Tetratricopeptide repea 97.9 5.3E-05 1.8E-09 58.3 8.4 68 244-316 2-69 (100)
195 3gge_A PDZ domain-containing p 97.9 5.2E-06 1.8E-10 66.3 2.6 50 85-134 5-57 (95)
196 1klx_A Cysteine rich protein B 97.8 0.00012 4.1E-09 60.1 10.2 108 199-317 12-126 (138)
197 3qwp_A SET and MYND domain-con 97.8 9.5E-05 3.2E-09 73.0 10.3 83 199-281 304-400 (429)
198 2ejy_A 55 kDa erythrocyte memb 97.7 5.6E-05 1.9E-09 60.0 6.6 48 87-134 14-65 (97)
199 1hz4_A MALT regulatory protein 97.7 0.00056 1.9E-08 63.3 13.8 129 154-282 55-204 (373)
200 3e4b_A ALGK; tetratricopeptide 97.7 0.00022 7.5E-09 69.8 11.2 79 199-283 196-282 (452)
201 2vwr_A Ligand of NUMB protein 97.7 5.4E-05 1.9E-09 58.7 5.4 51 84-134 2-58 (95)
202 1hz4_A MALT regulatory protein 97.7 0.00026 8.9E-09 65.6 10.9 131 154-284 16-167 (373)
203 3u64_A Protein TP_0956; tetrat 97.6 0.00039 1.3E-08 66.1 12.1 85 198-284 179-272 (301)
204 2qg1_A Multiple PDZ domain pro 97.6 6.6E-05 2.3E-09 57.8 5.0 51 84-134 3-58 (92)
205 1n7e_A AMPA receptor interacti 97.6 7.8E-05 2.7E-09 58.1 5.0 50 85-134 5-59 (97)
206 2yt7_A Amyloid beta A4 precurs 97.6 0.0004 1.4E-08 54.7 9.1 67 86-156 10-84 (101)
207 3n71_A Histone lysine methyltr 97.5 0.00028 9.7E-09 71.0 10.3 97 218-314 312-419 (490)
208 2jil_A GRIP1 protein, glutamat 97.5 0.00017 5.9E-09 55.9 6.2 50 85-134 3-61 (97)
209 2opg_A Multiple PDZ domain pro 97.4 0.00016 5.6E-09 56.2 5.4 50 85-134 4-59 (98)
210 2qkv_A Inactivation-NO-after-p 97.4 0.00014 4.7E-09 56.8 5.0 52 82-134 5-60 (96)
211 1kwa_A Hcask/LIN-2 protein; PD 97.4 0.00014 4.7E-09 56.1 4.9 61 93-159 13-75 (88)
212 1i16_A Interleukin 16, LCF; cy 97.4 0.0005 1.7E-08 56.8 8.6 52 83-134 27-86 (130)
213 2dmz_A INAD-like protein; PDZ 97.4 0.00034 1.2E-08 57.4 7.4 53 82-134 12-75 (129)
214 3e4b_A ALGK; tetratricopeptide 97.4 0.0009 3.1E-08 65.4 11.7 93 217-316 178-279 (452)
215 2la8_A Inactivation-NO-after-p 97.4 0.0002 6.9E-09 57.3 5.8 49 85-134 2-54 (106)
216 3qww_A SET and MYND domain-con 97.4 0.00093 3.2E-08 66.2 11.6 100 224-329 307-417 (433)
217 3b76_A E3 ubiquitin-protein li 97.4 6.6E-05 2.3E-09 61.5 2.7 56 79-134 18-82 (118)
218 1wha_A KIAA0147 protein, scrib 97.4 0.00019 6.7E-09 56.7 5.4 52 83-134 5-67 (105)
219 2iwn_A Multiple PDZ domain pro 97.4 0.00017 5.7E-09 55.6 4.8 51 84-134 3-62 (97)
220 3i4w_A Disks large homolog 4; 97.4 0.00018 6E-09 56.5 5.0 51 84-134 10-64 (104)
221 1m5z_A GRIP, AMPA receptor int 97.4 0.00024 8.2E-09 54.5 5.4 51 83-134 4-60 (91)
222 2jre_A C60-1 PDZ domain peptid 97.4 0.0002 6.8E-09 56.8 5.0 54 81-134 8-73 (108)
223 2r4h_A Membrane-associated gua 97.3 0.00024 8.2E-09 57.1 5.4 60 75-134 14-78 (112)
224 1xi4_A Clathrin heavy chain; a 97.3 0.0014 4.6E-08 73.8 12.7 81 204-284 1210-1312(1630)
225 1wf8_A Neurabin-I; PDZ domain, 97.3 0.00018 6.2E-09 57.1 4.1 53 82-134 6-69 (107)
226 2fcf_A Multiple PDZ domain pro 97.3 0.00011 3.8E-09 57.7 2.8 49 86-134 5-68 (103)
227 3cbz_A Dishevelled-2; PDZ doma 97.3 0.00035 1.2E-08 55.8 5.6 50 85-134 5-62 (108)
228 2dlu_A INAD-like protein; PDZ 97.2 0.00036 1.2E-08 55.6 5.4 50 85-134 15-67 (111)
229 1q7x_A PDZ2B domain of PTP-BAS 97.2 0.00031 1.1E-08 55.7 4.8 51 84-134 8-71 (108)
230 1d5g_A Human phosphatase HPTP1 97.2 0.0004 1.4E-08 53.7 5.2 50 85-134 5-62 (96)
231 4b4t_Q 26S proteasome regulato 97.2 0.0025 8.7E-08 59.7 11.7 130 154-283 57-206 (434)
232 2i1n_A Discs, large homolog 3; 97.2 0.00044 1.5E-08 54.2 5.5 51 84-134 3-63 (102)
233 3qwp_A SET and MYND domain-con 97.2 0.0027 9.2E-08 62.6 12.3 105 219-329 291-406 (429)
234 3mv2_B Coatomer subunit epsilo 97.2 0.0041 1.4E-07 59.3 13.1 30 253-284 256-285 (310)
235 1uep_A Membrane associated gua 97.2 0.00064 2.2E-08 53.6 6.3 52 83-134 7-63 (103)
236 3bee_A Putative YFRE protein; 97.2 0.0023 8E-08 49.7 9.5 52 199-250 26-78 (93)
237 2dm8_A INAD-like protein; PDZ 97.2 0.00023 7.9E-09 57.1 3.7 50 85-134 17-72 (116)
238 2e7k_A Maguk P55 subfamily mem 97.2 0.00045 1.5E-08 53.5 5.2 47 87-134 8-58 (91)
239 3axa_A Afadin, nectin-3, prote 97.2 0.00037 1.3E-08 55.1 4.8 52 83-134 9-67 (106)
240 1nzn_A CGI-135 protein, fissio 97.2 0.003 1E-07 52.7 10.5 83 203-287 22-109 (126)
241 1qau_A Neuronal nitric oxide s 97.2 0.00078 2.7E-08 53.6 6.7 49 86-134 2-55 (112)
242 2o2t_A Multiple PDZ domain pro 97.2 0.00038 1.3E-08 56.0 4.8 51 84-134 19-78 (117)
243 3mv2_B Coatomer subunit epsilo 97.2 0.0025 8.6E-08 60.7 11.3 157 156-322 104-290 (310)
244 1v62_A KIAA1719 protein; struc 97.1 0.00038 1.3E-08 56.4 4.7 50 85-134 15-71 (117)
245 2uzc_A Human pdlim5, PDZ and L 97.1 0.0004 1.4E-08 52.9 4.5 49 85-134 3-55 (88)
246 2q3g_A PDZ and LIM domain prot 97.1 0.00039 1.3E-08 53.2 4.4 49 85-134 3-55 (89)
247 2g5m_B Neurabin-2; spinophilin 97.1 0.00038 1.3E-08 55.7 4.5 51 84-134 3-64 (113)
248 2d92_A INAD-like protein; PDZ 97.1 0.0012 4E-08 52.6 7.3 49 86-134 16-73 (108)
249 2pa1_A PDZ and LIM domain prot 97.1 0.0004 1.4E-08 52.9 4.3 47 87-134 4-54 (87)
250 1uhp_A Hypothetical protein KI 97.1 0.00056 1.9E-08 54.2 5.3 51 83-133 6-69 (107)
251 1wh1_A KIAA1095 protein; PDZ d 97.1 0.00056 1.9E-08 55.9 5.4 57 94-156 33-93 (124)
252 2koj_A Partitioning defective 97.1 0.00059 2E-08 54.3 5.4 51 84-134 10-68 (111)
253 2w4f_A Protein LAP4; structura 97.1 0.00064 2.2E-08 52.6 5.4 50 84-134 2-62 (97)
254 2q9v_A Membrane-associated gua 97.1 0.00059 2E-08 52.1 5.1 50 85-134 2-56 (90)
255 1tp5_A Presynaptic density pro 97.1 0.00042 1.4E-08 55.9 4.4 53 82-134 11-67 (119)
256 3egg_C Spinophilin; PP1, serin 97.1 0.00022 7.6E-09 62.2 2.8 52 83-134 78-140 (170)
257 2awx_A Synapse associated prot 97.1 0.00065 2.2E-08 53.7 5.3 49 86-134 4-62 (105)
258 1wi2_A Riken cDNA 2700099C19; 97.1 0.001 3.5E-08 52.5 6.4 49 85-134 15-69 (104)
259 2jik_A Synaptojanin-2 binding 97.1 0.0008 2.7E-08 52.6 5.7 50 85-134 7-66 (101)
260 2he4_A Na(+)/H(+) exchange reg 97.1 0.00019 6.5E-09 55.0 2.0 47 87-134 6-56 (90)
261 1ueq_A Membrane associated gua 97.1 0.00059 2E-08 55.7 5.2 51 84-134 18-73 (123)
262 1uit_A Human discs large 5 pro 97.1 0.00057 1.9E-08 55.1 5.0 46 88-134 22-70 (117)
263 1qav_A Alpha-1 syntrophin (res 97.0 0.00046 1.6E-08 52.9 4.0 50 85-134 4-59 (90)
264 1va8_A Maguk P55 subfamily mem 97.0 0.00047 1.6E-08 55.4 4.3 48 86-134 26-77 (113)
265 1g9o_A NHE-RF; PDZ domain, com 97.0 0.00081 2.8E-08 51.4 5.5 47 87-134 5-55 (91)
266 2eno_A Synaptojanin-2-binding 97.0 0.00099 3.4E-08 53.9 6.2 55 80-134 12-76 (120)
267 3o46_A Maguk P55 subfamily mem 97.0 0.0011 3.7E-08 51.1 6.1 42 93-134 15-57 (93)
268 2djt_A Unnamed protein product 97.0 0.00048 1.6E-08 54.2 4.1 51 84-134 10-67 (104)
269 1wg6_A Hypothetical protein (r 97.0 0.0013 4.4E-08 54.2 6.9 50 85-134 25-84 (127)
270 2pkt_A PDZ and LIM domain prot 97.0 0.00053 1.8E-08 52.6 4.2 47 87-134 5-55 (91)
271 3l4f_D SH3 and multiple ankyri 97.0 0.0019 6.6E-08 53.5 8.0 47 87-134 29-93 (132)
272 2iwq_A Multiple PDZ domain pro 97.0 0.00034 1.2E-08 57.5 3.3 51 84-134 23-88 (123)
273 2ehr_A INAD-like protein; PDZ 97.0 0.0013 4.6E-08 52.8 6.8 50 85-134 15-79 (117)
274 2fne_A Multiple PDZ domain pro 97.0 0.00021 7E-09 58.2 1.9 50 85-134 25-82 (117)
275 1rgw_A ZAsp protein; PDZ, cyph 97.0 0.00042 1.4E-08 52.3 3.5 48 86-134 2-53 (85)
276 2h2b_A Tight junction protein 97.0 0.0014 4.8E-08 51.7 6.5 51 82-134 4-66 (107)
277 1um1_A KIAA1849 protein, RSGI 97.0 0.001 3.5E-08 52.9 5.6 50 85-134 8-65 (110)
278 2fe5_A Presynaptic protein SAP 97.0 0.00097 3.3E-08 51.2 5.3 50 85-134 3-62 (94)
279 2i04_A Membrane-associated gua 97.0 0.0011 3.6E-08 50.1 5.3 48 87-134 2-54 (85)
280 2daz_A INAD-like protein; PDZ 96.9 0.00089 3.1E-08 54.6 5.2 49 85-133 25-79 (124)
281 2vz5_A TAX1-binding protein 3; 96.9 0.0009 3.1E-08 56.1 5.1 54 80-134 18-92 (139)
282 1y8m_A FIS1; mitochondria, unk 96.9 0.01 3.5E-07 50.6 11.6 74 212-287 36-112 (144)
283 2byg_A Channel associated prot 96.9 0.001 3.6E-08 53.9 5.3 55 80-134 19-83 (117)
284 1ihj_A INAD; intermolecular di 96.9 0.00071 2.4E-08 52.5 4.1 48 87-134 7-66 (98)
285 1b89_A Protein (clathrin heavy 96.9 0.0017 5.8E-08 64.9 7.9 50 218-278 125-174 (449)
286 3ly7_A Transcriptional activat 96.9 0.0045 1.5E-07 60.5 10.6 121 199-325 216-347 (372)
287 1x5q_A LAP4 protein; PDZ domai 96.9 0.0012 4E-08 52.5 5.4 51 83-134 13-74 (110)
288 2d90_A PDZ domain containing p 96.9 0.0013 4.6E-08 51.4 5.7 48 86-134 7-58 (102)
289 2db5_A INAD-like protein; PDZ 96.9 0.0015 5.3E-08 53.4 6.3 69 85-156 25-102 (128)
290 1nf3_C PAR-6B; semi-CRIB motif 96.9 0.00035 1.2E-08 57.5 2.2 49 86-134 30-94 (128)
291 2eaq_A LIM domain only protein 96.9 0.0021 7.1E-08 49.0 6.4 39 94-134 18-56 (90)
292 3tsv_A Tight junction protein 96.9 0.0012 4.3E-08 54.1 5.4 41 93-134 39-79 (124)
293 1wf7_A Enigma homologue protei 96.9 0.00071 2.4E-08 53.2 3.8 49 85-134 5-57 (103)
294 1n7t_A 99-MER peptide of densi 96.9 0.0012 4E-08 51.9 5.0 51 82-134 8-70 (103)
295 2eeg_A PDZ and LIM domain prot 96.8 0.00078 2.7E-08 52.1 3.8 49 85-134 8-60 (94)
296 4b4t_Q 26S proteasome regulato 96.8 0.0043 1.5E-07 58.1 9.6 64 219-282 59-125 (434)
297 1b8q_A Protein (neuronal nitri 96.8 0.00091 3.1E-08 54.6 4.3 68 84-157 7-81 (127)
298 3e17_A Tight junction protein 96.8 0.0017 6E-08 49.8 5.6 61 93-161 13-73 (88)
299 1mfg_A ERB-B2 interacting prot 96.8 0.0022 7.6E-08 49.4 6.2 48 85-134 3-62 (95)
300 2kom_A Partitioning defective 96.8 0.0015 5.1E-08 53.2 5.4 51 84-134 29-87 (121)
301 3hpk_A Protein interacting wit 96.8 0.00061 2.1E-08 55.6 2.9 79 85-167 19-103 (125)
302 3o48_A Mitochondria fission 1 96.8 0.0091 3.1E-07 50.3 10.2 75 211-287 36-113 (134)
303 2iwo_A Multiple PDZ domain pro 96.8 0.00037 1.3E-08 57.0 1.5 53 82-134 21-82 (120)
304 1q3o_A Shank1; PDZ, GKAP, pept 96.8 0.0032 1.1E-07 49.9 7.0 47 87-134 9-73 (109)
305 3gsl_A Disks large homolog 4; 96.8 0.0014 5E-08 56.3 5.3 51 84-134 4-64 (196)
306 1x6d_A Interleukin-16; PDZ dom 96.8 0.0011 3.7E-08 53.6 4.2 52 83-134 13-71 (119)
307 1v5q_A GRIP1 homolog, glutamat 96.8 0.0035 1.2E-07 50.9 7.2 54 81-134 11-74 (122)
308 2v5f_A Prolyl 4-hydroxylase su 96.7 0.0075 2.6E-07 46.9 8.9 39 218-259 49-87 (104)
309 2edp_A Fragment, shroom family 96.7 0.00092 3.1E-08 52.5 3.5 52 83-134 9-64 (100)
310 1wi4_A Synip, syntaxin binding 96.7 0.0036 1.2E-07 50.0 7.0 50 85-134 15-70 (109)
311 3r68_A Na(+)/H(+) exchange reg 96.7 0.0017 5.9E-08 49.9 4.9 46 88-134 8-57 (95)
312 2z17_A Pleckstrin homology SEC 96.7 0.0018 6.2E-08 50.9 5.1 47 87-134 17-76 (104)
313 1wfv_A Membrane associated gua 96.7 0.00065 2.2E-08 53.1 2.4 51 84-134 10-65 (103)
314 2cs5_A Tyrosine-protein phosph 96.7 0.004 1.4E-07 50.1 7.1 50 85-134 15-71 (119)
315 2rcz_A Tight junction protein 96.7 0.0004 1.4E-08 51.6 0.8 39 92-134 12-50 (81)
316 1um7_A Synapse-associated prot 96.7 0.0008 2.7E-08 53.5 2.6 52 83-134 13-68 (113)
317 1uez_A KIAA1526 protein; PDZ d 96.6 0.002 6.7E-08 50.4 4.8 47 87-134 10-63 (101)
318 2jxo_A Ezrin-radixin-moesin-bi 96.6 0.0038 1.3E-07 48.4 6.4 46 88-134 12-61 (98)
319 1wfg_A Regulating synaptic mem 96.6 0.0026 8.8E-08 52.6 5.7 41 93-133 48-93 (131)
320 1b89_A Protein (clathrin heavy 96.6 0.00081 2.8E-08 67.3 3.0 103 153-274 95-199 (449)
321 3kzd_A TIAM-1, T-lymphoma inva 96.6 0.0027 9.2E-08 50.3 5.3 52 82-134 3-63 (94)
322 2eeh_A PDZ domain-containing p 96.6 0.0021 7.2E-08 50.2 4.6 47 87-134 12-64 (100)
323 2dkr_A LIN-7 homolog B; LIN-7B 96.6 0.0018 6.3E-08 49.5 4.2 48 87-134 7-59 (93)
324 1ujd_A KIAA0559 protein; PDZ d 96.6 0.0023 7.7E-08 51.7 4.8 55 80-134 7-78 (117)
325 2kpk_A Membrane-associated gua 96.5 0.0036 1.2E-07 51.4 6.0 50 85-134 18-72 (129)
326 1uew_A Membrane associated gua 96.5 0.0035 1.2E-07 50.2 5.8 51 83-134 8-72 (114)
327 3u64_A Protein TP_0956; tetrat 96.5 0.0039 1.3E-07 59.3 6.9 54 231-285 179-237 (301)
328 1v5l_A PDZ and LIM domain 3; a 96.5 0.0016 5.5E-08 51.2 3.5 48 86-134 6-57 (103)
329 2dls_A PDZ-rhogef, RHO guanine 96.5 0.0045 1.5E-07 47.7 6.0 47 85-134 8-57 (93)
330 2ego_A General receptor for ph 96.5 0.0033 1.1E-07 48.7 5.1 48 86-134 5-65 (96)
331 1vb7_A PDZ and LIM domain 2; P 96.5 0.0018 6.2E-08 50.0 3.5 48 86-134 7-58 (94)
332 2dc2_A GOPC, golgi associated 96.5 0.001 3.5E-08 52.5 2.1 49 86-134 10-64 (103)
333 2gzv_A PRKCA-binding protein; 96.5 0.00098 3.4E-08 53.9 2.0 41 94-134 37-79 (114)
334 1uju_A Scribble; PDZ domain, c 96.4 0.0025 8.6E-08 50.7 4.3 49 86-134 10-73 (111)
335 1x5n_A Harmonin; PDZ domain, u 96.4 0.0084 2.9E-07 47.7 7.5 41 93-134 27-69 (114)
336 2csj_A TJP2 protein; PDZ domai 96.4 0.0044 1.5E-07 49.8 5.5 52 81-134 10-73 (117)
337 4e34_A Golgi-associated PDZ an 96.4 0.0031 1E-07 47.7 4.3 48 87-134 4-57 (87)
338 1whd_A RGS3, regulator of G-pr 96.4 0.0018 6.3E-08 50.7 2.9 52 80-134 10-64 (100)
339 3qik_A Phosphatidylinositol 3, 96.3 0.0042 1.4E-07 49.9 5.0 41 92-134 27-67 (101)
340 1ufx_A KIAA1526 protein; PDZ d 96.3 0.0056 1.9E-07 48.4 5.7 48 87-134 8-61 (103)
341 3sfj_A TAX1-binding protein 3; 96.3 0.0038 1.3E-07 48.8 4.6 40 94-134 20-73 (104)
342 2v90_A PDZ domain-containing p 96.3 0.0042 1.4E-07 47.9 4.7 41 93-134 14-58 (96)
343 3r0h_A INAD, inactivation-NO-a 96.3 0.0045 1.5E-07 54.0 5.4 50 85-134 18-74 (206)
344 4amh_A Disks large homolog 1; 96.2 0.0042 1.4E-07 49.3 4.4 42 93-134 13-61 (106)
345 3ngh_A PDZ domain-containing p 96.2 0.003 1E-07 49.6 3.5 41 93-134 13-54 (106)
346 2edz_A PDZ domain-containing p 96.2 0.01 3.5E-07 47.4 6.6 47 87-134 15-66 (114)
347 3cyy_A Tight junction protein 96.2 0.0049 1.7E-07 46.9 4.4 38 93-134 15-52 (92)
348 2kv8_A RGS12, regulator of G-p 96.2 0.0034 1.2E-07 47.1 3.5 45 87-134 4-51 (83)
349 1v6b_A Harmonin isoform A1; st 96.2 0.015 5.3E-07 46.9 7.6 45 90-134 25-72 (118)
350 3bpu_A Membrane-associated gua 96.2 0.0091 3.1E-07 45.2 5.9 47 85-134 3-53 (88)
351 1z87_A Alpha-1-syntrophin; pro 96.1 0.0034 1.2E-07 58.5 4.0 82 83-168 75-162 (263)
352 3tsz_A Tight junction protein 96.1 0.008 2.7E-07 58.8 6.7 41 93-134 19-59 (391)
353 2f5y_A Regulator of G-protein 96.0 0.005 1.7E-07 47.1 4.0 44 88-134 6-52 (91)
354 1uf1_A KIAA1526 protein; PDZ d 96.0 0.0066 2.3E-07 49.5 4.9 47 87-134 24-74 (128)
355 2eei_A PDZ domain-containing p 96.0 0.0038 1.3E-07 49.0 3.3 47 87-134 10-60 (106)
356 2kjd_A Sodium/hydrogen exchang 96.0 0.012 4.1E-07 47.7 6.4 47 87-134 11-61 (128)
357 1pc2_A Mitochondria fission pr 96.0 0.022 7.6E-07 48.8 8.2 93 230-326 13-113 (152)
358 3ffl_A Anaphase-promoting comp 96.0 0.018 6E-07 50.3 7.5 60 217-277 65-147 (167)
359 1w9e_A Syntenin 1; cell adhesi 96.0 0.0063 2.1E-07 51.7 4.6 46 87-134 6-55 (166)
360 2pzd_A Serine protease HTRA2; 95.9 0.0097 3.3E-07 47.3 5.4 45 104-155 34-78 (113)
361 3nfk_A Tyrosine-protein phosph 95.9 0.0077 2.6E-07 47.3 4.5 50 85-134 17-73 (107)
362 1ujv_A Membrane associated gua 95.9 0.012 4E-07 45.8 5.3 46 85-134 10-58 (96)
363 1p1d_A PDZ45, glutamate recept 95.8 0.0096 3.3E-07 51.9 5.2 50 85-134 6-65 (196)
364 3r0h_A INAD, inactivation-NO-a 95.8 0.0038 1.3E-07 54.5 2.6 49 85-134 113-165 (206)
365 2vsp_A PDZ domain-containing p 95.8 0.0046 1.6E-07 47.3 2.6 47 87-134 5-55 (91)
366 2d8i_A T-cell lymphoma invasio 95.8 0.0064 2.2E-07 49.3 3.6 52 82-134 12-72 (114)
367 1wif_A RSGI RUH-020, riken cDN 95.7 0.009 3.1E-07 49.5 4.5 65 85-156 27-96 (126)
368 3k1r_A Harmonin; protein-prote 95.7 0.007 2.4E-07 52.9 4.0 49 85-134 84-138 (192)
369 3shw_A Tight junction protein 95.7 0.0088 3E-07 60.1 5.2 46 88-134 4-51 (468)
370 2yub_A LIMK-2, LIM domain kina 95.7 0.014 4.7E-07 47.5 5.4 57 94-157 28-93 (118)
371 3qe1_A Sorting nexin-27, G pro 95.7 0.023 7.9E-07 44.5 6.5 47 87-134 8-71 (107)
372 1r6j_A Syntenin 1; PDZ, membra 95.3 0.022 7.7E-07 43.6 5.2 61 85-155 4-68 (82)
373 2vsv_A Rhophilin-2; scaffold p 95.3 0.016 5.3E-07 46.7 4.4 44 88-134 26-72 (109)
374 3gsl_A Disks large homolog 4; 95.3 0.007 2.4E-07 51.9 2.4 49 86-134 101-159 (196)
375 2qt5_A Glutamate receptor-inte 95.3 0.018 6E-07 50.2 4.9 50 85-134 7-62 (200)
376 3khf_A Microtubule-associated 95.2 0.0098 3.3E-07 46.1 2.8 41 93-134 13-62 (99)
377 2lob_A Golgi-associated PDZ an 94.1 0.0036 1.2E-07 50.5 0.0 41 93-134 39-82 (112)
378 2xkx_A Disks large homolog 4; 94.9 0.016 5.5E-07 60.8 4.1 50 85-134 307-360 (721)
379 1y7n_A Amyloid beta A4 precurs 94.8 0.028 9.7E-07 43.3 4.3 36 93-134 24-59 (90)
380 1p1d_A PDZ45, glutamate recept 94.7 0.054 1.9E-06 47.0 6.6 49 86-134 108-164 (196)
381 2qt5_A Glutamate receptor-inte 94.7 0.049 1.7E-06 47.3 6.0 66 85-156 106-182 (200)
382 2qbw_A PDZ-fibronectin fusion 94.6 0.038 1.3E-06 47.6 5.3 69 93-167 2-80 (195)
383 2edv_A FERM and PDZ domain-con 94.6 0.019 6.5E-07 44.5 3.0 46 85-134 8-58 (96)
384 3suz_A Amyloid beta A4 precurs 94.6 0.012 4.2E-07 57.3 2.2 50 85-134 204-261 (388)
385 1vae_A Rhophilin 2, rhophilin, 94.5 0.031 1.1E-06 44.8 4.0 39 93-134 26-64 (111)
386 2xkx_A Disks large homolog 4; 94.4 0.038 1.3E-06 58.0 5.5 52 83-134 57-118 (721)
387 2krg_A Na(+)/H(+) exchange reg 94.4 0.046 1.6E-06 49.2 5.3 47 87-134 11-61 (216)
388 2l97_A HTRA, putative serine p 94.2 0.089 3E-06 43.4 6.3 45 104-156 56-100 (134)
389 3i18_A LMO2051 protein; alpha- 94.0 0.087 3E-06 41.0 5.6 46 103-156 5-50 (100)
390 4gns_B Protein CSD3, chitin bi 93.9 0.1 3.4E-06 55.3 7.5 56 220-278 342-397 (754)
391 2kl1_A YLBL protein; structure 93.1 0.1 3.5E-06 40.2 4.5 45 104-156 4-48 (94)
392 1te0_A Protease DEGS; two doma 93.0 0.13 4.5E-06 48.2 6.0 55 95-156 223-288 (318)
393 4g26_A Pentatricopeptide repea 92.9 2.1 7.1E-05 42.6 15.0 70 211-284 101-172 (501)
394 1y8t_A Hypothetical protein RV 92.4 0.18 6.1E-06 47.3 6.1 54 95-155 231-285 (324)
395 4e6h_A MRNA 3'-END-processing 92.3 0.4 1.4E-05 50.0 9.2 76 203-281 330-407 (679)
396 4fgm_A Aminopeptidase N family 92.3 0.066 2.3E-06 55.2 3.1 39 94-134 486-524 (597)
397 2yuy_A RHO GTPase activating p 92.2 0.03 1E-06 45.5 0.4 29 105-134 61-89 (126)
398 4e6h_A MRNA 3'-END-processing 92.1 0.81 2.8E-05 47.7 11.1 128 202-332 454-588 (679)
399 2p3w_A Probable serine proteas 92.1 0.14 4.7E-06 40.4 4.1 30 104-134 34-63 (112)
400 3id1_A Regulator of sigma E pr 91.9 0.12 4E-06 40.1 3.5 45 107-158 4-48 (95)
401 1nzn_A CGI-135 protein, fissio 91.7 0.39 1.3E-05 39.8 6.7 33 216-248 75-107 (126)
402 2kjp_A Uncharacterized protein 91.6 0.089 3E-06 40.6 2.5 43 106-156 2-44 (91)
403 2i6v_A General secretion pathw 91.4 0.13 4.5E-06 38.9 3.2 40 93-134 5-47 (87)
404 3rle_A Golgi reassembly-stacki 91.4 0.17 5.8E-06 44.6 4.5 40 94-134 96-141 (209)
405 1ya0_A SMG-7 transcript varian 91.2 0.57 2E-05 47.1 8.5 62 219-283 156-217 (497)
406 2ff4_A Probable regulatory pro 91.0 0.59 2E-05 45.0 8.2 58 220-280 176-233 (388)
407 1w9e_A Syntenin 1; cell adhesi 91.0 0.23 7.7E-06 41.9 4.6 43 86-134 89-135 (166)
408 3stj_A Protease DEGQ; serine p 90.4 0.27 9.2E-06 46.9 5.1 46 104-156 262-307 (345)
409 1fc6_A Photosystem II D1 prote 90.3 0.2 6.9E-06 48.4 4.2 40 94-134 86-127 (388)
410 2hga_A Conserved protein MTH13 90.2 0.39 1.3E-05 39.2 5.2 46 102-155 22-67 (125)
411 2zpm_A Regulator of sigma E pr 89.7 0.15 5E-06 38.5 2.1 44 107-157 6-49 (91)
412 3rle_A Golgi reassembly-stacki 89.5 0.16 5.4E-06 44.9 2.5 29 105-134 16-45 (209)
413 3o48_A Mitochondria fission 1 89.3 0.37 1.3E-05 40.4 4.4 34 215-248 78-111 (134)
414 2i4s_A General secretion pathw 88.6 0.38 1.3E-05 37.6 3.9 28 106-134 38-65 (105)
415 3kae_A CDC27, possible protein 88.6 1.9 6.5E-05 38.3 8.6 70 215-284 62-146 (242)
416 4a8c_A Periplasmic PH-dependen 88.4 0.14 4.8E-06 50.4 1.5 57 105-168 363-419 (436)
417 1y8m_A FIS1; mitochondria, unk 88.4 0.44 1.5E-05 40.5 4.3 34 215-248 77-110 (144)
418 3qo6_A Protease DO-like 1, chl 87.6 0.46 1.6E-05 45.1 4.5 54 95-155 235-305 (348)
419 1ky9_A Protease DO, DEGP, HTRA 87.5 0.11 3.7E-06 51.5 0.0 65 96-167 373-438 (448)
420 3ffl_A Anaphase-promoting comp 87.1 1.2 4.1E-05 38.7 6.4 107 220-327 25-148 (167)
421 4a8c_A Periplasmic PH-dependen 86.3 0.71 2.4E-05 45.3 5.2 29 105-134 263-291 (436)
422 3pv2_A DEGQ; trypsin fold, PDZ 86.3 0.61 2.1E-05 46.1 4.7 44 105-155 282-325 (451)
423 3k50_A Putative S41 protease; 86.3 0.45 1.6E-05 46.6 3.7 28 106-134 91-118 (403)
424 3mkq_A Coatomer beta'-subunit; 86.2 2.4 8.1E-05 42.8 9.1 48 223-278 660-707 (814)
425 1lcy_A HTRA2 serine protease; 86.1 0.5 1.7E-05 44.4 3.8 30 104-134 255-284 (325)
426 3soe_A Membrane-associated gua 85.4 1.3 4.3E-05 35.9 5.3 46 85-134 12-60 (113)
427 1zbp_A Hypothetical protein VP 85.0 2.2 7.5E-05 39.8 7.4 61 224-287 6-66 (273)
428 3kae_A CDC27, possible protein 82.7 16 0.00056 32.3 11.6 100 219-329 37-142 (242)
429 3num_A Serine protease HTRA1; 82.4 0.26 8.9E-06 46.5 0.0 29 104-133 253-281 (332)
430 4h7y_A Dual specificity protei 82.4 2.6 9E-05 36.3 6.3 60 225-287 70-129 (161)
431 4g26_A Pentatricopeptide repea 82.1 12 0.00042 36.9 12.1 69 211-283 136-206 (501)
432 2uy1_A Cleavage stimulation fa 82.1 7.4 0.00025 38.3 10.5 53 231-287 195-247 (493)
433 3spa_A Mtrpol, DNA-directed RN 80.6 9.8 0.00033 41.9 11.4 61 220-284 132-197 (1134)
434 2ff4_A Probable regulatory pro 80.5 23 0.00078 33.7 13.1 93 219-313 119-230 (388)
435 3suz_A Amyloid beta A4 precurs 79.7 0.37 1.3E-05 46.8 0.0 26 108-134 318-343 (388)
436 3mkq_A Coatomer beta'-subunit; 79.5 12 0.00041 37.6 11.2 27 215-241 681-707 (814)
437 4fhn_B Nucleoporin NUP120; pro 78.5 12 0.00039 41.0 11.4 69 216-284 843-931 (1139)
438 3pv2_A DEGQ; trypsin fold, PDZ 77.2 1.1 3.8E-05 44.2 2.6 44 105-155 386-429 (451)
439 2lnm_A Protein TIC 40, chlorop 76.3 5.4 0.00019 28.5 5.5 26 286-311 5-30 (62)
440 4fln_A Protease DO-like 2, chl 75.7 2.6 8.9E-05 42.9 4.9 38 95-134 255-304 (539)
441 1k32_A Tricorn protease; prote 74.2 3.1 0.00011 44.4 5.3 39 94-134 738-785 (1045)
442 4b4t_R RPN7, 26S proteasome re 73.5 4 0.00014 39.7 5.5 63 219-281 135-197 (429)
443 3mkq_B Coatomer subunit alpha; 72.5 29 0.001 30.0 10.2 45 226-278 16-60 (177)
444 2llv_A Heat shock protein STI1 71.4 5.7 0.00019 29.3 4.7 50 282-331 12-69 (71)
445 1wy6_A Hypothetical protein ST 70.3 28 0.00097 29.7 9.2 68 214-284 89-157 (172)
446 1ky9_A Protease DO, DEGP, HTRA 69.4 1.7 5.9E-05 42.8 1.8 29 105-134 286-314 (448)
447 2ijq_A Hypothetical protein; s 66.6 21 0.00072 30.5 7.9 65 217-281 34-104 (161)
448 2w2u_A Hypothetical P60 katani 63.5 9 0.00031 29.1 4.5 26 218-243 22-47 (83)
449 2v6y_A AAA family ATPase, P60 62.0 9.9 0.00034 28.7 4.5 26 218-243 14-39 (83)
450 2crb_A Nuclear receptor bindin 61.7 7.3 0.00025 30.7 3.6 24 220-243 20-43 (97)
451 2ca5_A MXIH; transport protein 61.2 17 0.00059 27.9 5.6 48 268-327 26-74 (85)
452 3txn_A 26S proteasome regulato 61.1 36 0.0012 32.9 9.4 62 220-281 104-168 (394)
453 1zbp_A Hypothetical protein VP 59.8 51 0.0017 30.5 9.7 84 201-284 16-132 (273)
454 4a5x_A MITD1, MIT domain-conta 59.6 9.3 0.00032 29.2 4.0 25 257-281 21-45 (86)
455 3ax2_A Mitochondrial import re 56.7 17 0.00057 27.2 4.8 31 218-248 20-50 (73)
456 2g0u_A Type III secretion syst 56.5 28 0.00096 27.2 6.2 49 268-328 32-81 (92)
457 3spa_A Mtrpol, DNA-directed RN 56.3 96 0.0033 34.2 12.5 70 211-284 161-233 (1134)
458 2rpa_A Katanin P60 ATPase-cont 55.4 30 0.001 26.0 6.1 56 255-316 15-70 (78)
459 2uy1_A Cleavage stimulation fa 53.9 49 0.0017 32.3 9.2 46 202-248 199-245 (493)
460 2crb_A Nuclear receptor bindin 53.8 17 0.00059 28.5 4.6 30 252-281 15-44 (97)
461 2cfu_A SDSA1; SDS-hydrolase, l 52.5 34 0.0012 35.1 8.1 51 218-271 452-502 (658)
462 1wfd_A Hypothetical protein 15 52.2 17 0.0006 27.9 4.5 22 220-241 20-41 (93)
463 2v6x_A Vacuolar protein sortin 51.3 19 0.00065 27.0 4.5 24 220-243 18-41 (85)
464 1qsa_A Protein (soluble lytic 50.0 61 0.0021 33.2 9.4 58 219-280 290-347 (618)
465 2cpt_A SKD1 protein, vacuolar 47.2 19 0.00065 29.0 4.1 24 220-243 23-46 (117)
466 2llw_A Heat shock protein STI1 45.6 34 0.0012 25.2 5.0 24 288-311 15-38 (71)
467 2w2u_A Hypothetical P60 katani 44.9 29 0.00098 26.2 4.6 28 254-281 21-48 (83)
468 2cwy_A Hypothetical protein TT 43.9 36 0.0012 26.2 5.1 60 219-280 5-67 (94)
469 2v6y_A AAA family ATPase, P60 43.0 32 0.0011 25.8 4.6 27 255-281 14-40 (83)
470 2rpa_A Katanin P60 ATPase-cont 41.8 22 0.00077 26.8 3.5 28 217-244 14-41 (78)
471 2xze_A STAM-binding protein; h 40.1 53 0.0018 27.3 5.9 67 242-312 25-96 (146)
472 2vkj_A TM1634; membrane protei 39.7 80 0.0027 24.7 6.3 46 218-263 56-101 (106)
473 2p58_C Putative type III secre 38.0 1.3E+02 0.0043 24.2 7.4 66 203-277 27-94 (116)
474 1wfd_A Hypothetical protein 15 37.9 41 0.0014 25.7 4.6 28 254-281 17-44 (93)
475 1om2_A Protein (mitochondrial 37.8 31 0.001 27.0 3.8 29 219-247 24-52 (95)
476 4b4t_S RPN3, 26S proteasome re 36.2 27 0.00093 35.3 4.1 59 223-283 239-301 (523)
477 4a5x_A MITD1, MIT domain-conta 36.1 47 0.0016 25.1 4.6 25 219-243 20-44 (86)
478 4b4t_S RPN3, 26S proteasome re 36.0 82 0.0028 31.8 7.5 100 219-325 274-381 (523)
479 1ya0_A SMG-7 transcript varian 35.2 1.1E+02 0.0037 30.5 8.3 62 200-264 170-232 (497)
480 2v6x_A Vacuolar protein sortin 34.2 53 0.0018 24.4 4.6 28 254-281 15-42 (85)
481 2cpt_A SKD1 protein, vacuolar 31.1 49 0.0017 26.5 4.1 27 255-281 21-47 (117)
482 4gq2_M Nucleoporin NUP120; bet 31.1 94 0.0032 33.2 7.5 67 216-282 841-927 (950)
483 2br9_A 14-3-3E, 14-3-3 protein 30.8 93 0.0032 28.0 6.4 50 232-281 147-202 (234)
484 2npm_A 14-3-3 domain containin 30.7 91 0.0031 28.6 6.3 51 232-282 173-228 (260)
485 3txn_A 26S proteasome regulato 27.5 3.3E+02 0.011 26.1 10.1 58 222-279 146-208 (394)
486 4gq2_M Nucleoporin NUP120; bet 27.3 91 0.0031 33.4 6.6 101 220-328 815-924 (950)
487 3ax2_A Mitochondrial import re 26.9 1.2E+02 0.004 22.5 5.2 31 255-285 20-50 (73)
488 4gns_B Protein CSD3, chitin bi 26.2 2.9E+02 0.0098 29.0 10.0 54 259-327 344-397 (754)
489 1o9d_A 14-3-3-like protein C; 26.0 1.2E+02 0.0042 27.7 6.4 50 232-281 152-207 (260)
490 3uzd_A 14-3-3 protein gamma; s 25.8 1.3E+02 0.0044 27.4 6.4 50 232-281 148-203 (248)
491 2yhe_A SEC-alkyl sulfatase; hy 31.1 15 0.00051 38.1 0.0 51 219-272 465-515 (668)
492 3lew_A SUSD-like carbohydrate 24.1 1.5E+02 0.0052 28.9 7.1 52 231-282 174-233 (495)
493 3mcx_A SUSD superfamily protei 23.5 1.7E+02 0.006 28.2 7.4 52 231-282 176-232 (477)
494 3iqu_A 14-3-3 protein sigma; s 23.0 1.4E+02 0.0047 27.0 6.0 51 231-281 149-205 (236)
495 3t5x_A PCI domain-containing p 22.6 1.6E+02 0.0053 25.5 6.1 30 219-248 18-47 (203)
496 3ubw_A 14-3-3E, 14-3-3 protein 22.6 1.6E+02 0.0054 27.0 6.4 50 232-281 173-228 (261)
497 3myv_A SUSD superfamily protei 21.9 1.8E+02 0.0063 27.9 7.1 51 231-281 164-219 (454)
498 3t5x_A PCI domain-containing p 21.4 1E+02 0.0034 26.7 4.6 33 252-284 14-46 (203)
499 4fhn_B Nucleoporin NUP120; pro 20.4 1E+02 0.0035 33.6 5.4 101 221-329 818-927 (1139)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.55 E-value=4.5e-14 Score=115.60 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=74.3
Q ss_pred HHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 019871 185 RAERNSGVISN--RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC 261 (334)
Q Consensus 185 ~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~a 261 (334)
.++++.|+... +..+.++..|.++++++|.....+ ++|.+++++|+|++|+..|+++|+++|++ ..+|+++|.|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF---IKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---hHHHHHHHHH
Confidence 34555555443 334666777888888888766654 78888888888888888888888888887 5678888888
Q ss_pred HHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 262 YSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 262 y~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
|..+|++++|+.+|++||+++|++..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 88888888888888888888887654
No 2
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.53 E-value=8.2e-14 Score=114.05 Aligned_cols=115 Identities=17% Similarity=0.277 Sum_probs=94.0
Q ss_pred HHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 208 KKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 208 ~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
.+.++|+.++.+ ++|..+++.|+|++|+.+|+++|+++|++ +.+|+++|.||..+|++++|+.+|++||+++|.+.
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence 345677766655 99999999999999999999999999998 68999999999999999999999999999999988
Q ss_pred HHHhcChhhHHHhcChHHHHHHHHHHHhhh----chhHHHHHHHh
Q 019871 287 KRVRTDPDLENLRASEEFDVLLKRFDESFI----NENAINAIKSL 327 (334)
Q Consensus 287 ~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~----~~~ai~~~k~~ 327 (334)
..... -+. .+....+|.++++.|++.+. +..|.+.+..+
T Consensus 82 ~a~~~-lg~-~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 82 KGYIR-KAA-CLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHH-HHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHH-HHH-HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 73322 222 34556789999999999983 45566665554
No 3
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.47 E-value=6.5e-13 Score=139.91 Aligned_cols=157 Identities=10% Similarity=0.013 Sum_probs=120.6
Q ss_pred HHHhhhhHHHHhhcccchhhhhc-hhcHHH-HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHc
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG-ELSEKE-IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRT 228 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~-~l~ek~-~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~ 228 (334)
+...+|.++.+++++.++++... .+..+. ...++.+.|.++..+ .+.++..|.++++++|+..+++ ++|.++.++
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~ 90 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 90 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45678999999999999998533 222111 135667777776555 4777899999999999987765 999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHH
Q 019871 229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLL 308 (334)
Q Consensus 229 g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL 308 (334)
|++++|+++|++|++++|++ +.+|+|+|.+|..+|++++|+++|++||+++|++......- . ..+....+|.+++
T Consensus 91 g~~~~A~~~~~kAl~l~P~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L-~-~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 91 QDVQGALQCYTRAIQINPAF---ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL-A-HCLQIVCDWTDYD 165 (723)
T ss_dssp TCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH-H-HHHHHTTCCTTHH
T ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhh-h-hHHHhcccHHHHH
Confidence 99999999999999999998 68999999999999999999999999999999987633221 1 1223334455555
Q ss_pred HHHHHhh
Q 019871 309 KRFDESF 315 (334)
Q Consensus 309 ~~~~e~~ 315 (334)
+.|++.+
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 4
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.46 E-value=6.9e-13 Score=113.19 Aligned_cols=108 Identities=5% Similarity=-0.047 Sum_probs=89.6
Q ss_pred hhhchhcHHHHHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 019871 173 EQTGELSEKEIIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPE 249 (334)
Q Consensus 173 e~~~~l~ek~~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~ 249 (334)
....++.... ..++.+.|.... +..+.++..|.+.++++|.+...+ ++|.+++++|+|++|+.+|+++++++|++
T Consensus 26 ~~al~l~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~- 103 (151)
T 3gyz_A 26 KDINAIPDDM-MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND- 103 (151)
T ss_dssp GGGCCSCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-
T ss_pred HHHhCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-
Confidence 3334445543 344555665553 345777899999999999987765 99999999999999999999999999998
Q ss_pred cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 250 ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 250 e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
+.+|+++|.||..+|++++|+.+|++|+++.|+
T Consensus 104 --~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 104 --YTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp --CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred --cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 579999999999999999999999999999987
No 5
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=1e-12 Score=110.81 Aligned_cols=159 Identities=10% Similarity=0.088 Sum_probs=107.8
Q ss_pred HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHc
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRT 228 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~ 228 (334)
+...+|.++...+++.++++......+.+ ...++.+.|.+...+ .+.++..+.+.+...|.....+ .+|..+...
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMI 86 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHc
Confidence 56678888888888888887433221111 134455555554333 3455666777777777765554 778888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHH
Q 019871 229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLL 308 (334)
Q Consensus 229 g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL 308 (334)
++++.|+..++++++++|++ ..+++++|.+|..+|++++|++.|+++++++|.+...... -+. .+....+|++++
T Consensus 87 ~~~~~a~~~~~~a~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-lg~-~~~~~g~~~~A~ 161 (184)
T 3vtx_A 87 DEKQAAIDALQRAIALNTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQS-IGL-AYEGKGLRDEAV 161 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH-HHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHH-HHH-HHHHCCCHHHHH
Confidence 88888888888888888887 5678888888888888888888888888888877662221 121 234456788888
Q ss_pred HHHHHhhhc
Q 019871 309 KRFDESFIN 317 (334)
Q Consensus 309 ~~~~e~~~~ 317 (334)
+.|++.+..
T Consensus 162 ~~~~~al~~ 170 (184)
T 3vtx_A 162 KYFKKALEK 170 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 888877743
No 6
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.42 E-value=6.9e-13 Score=115.78 Aligned_cols=86 Identities=10% Similarity=0.008 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhhccC-------HH------HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCCcchHHH--
Q 019871 198 REIQMQNYMKKKEQKER-------RE------QDLREGLQLYRTGKYEVAREKFESVLGS-------KPTPEESSVAS-- 255 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~-------~~------~~~nlG~al~~~g~yeeAl~~fekALel-------dP~~~e~~~a~-- 255 (334)
.+.++..|.++++++|+ +. .+.|+|.++.++|+|++|+.+|++||++ +|++ +.+|
T Consensus 27 ~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~---~~A~~~ 103 (159)
T 2hr2_A 27 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE---GKLWIS 103 (159)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH---HHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch---HHHHHH
Confidence 45677788888888887 32 3349999999999999999999999999 9998 6899
Q ss_pred --HHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 256 --YNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 256 --yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
||+|.+|..+|++++|+.+|++||+++|++.
T Consensus 104 ~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 104 AVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 9999999999999999999999999998854
No 7
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=4.5e-12 Score=106.87 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=99.5
Q ss_pred HHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC
Q 019871 155 RQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTG 229 (334)
Q Consensus 155 ~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g 229 (334)
...+|.++..+++...+++......... ....+...|.+.... .+.+...+.+++++.|.....+ .+|.+++++|
T Consensus 42 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g 121 (184)
T 3vtx_A 42 LLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMG 121 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhC
Confidence 3457888888888888776432221111 012233344333322 3556778888899999877665 9999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 230 ~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
+|++|++.|+++++++|++ +.+|+++|.+|..+|++++|+.+|++||+++|++.
T Consensus 122 ~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 122 EHDKAIEAYEKTISIKPGF---IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp CHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred CchhHHHHHHHHHHhcchh---hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 9999999999999999998 68999999999999999999999999999998754
No 8
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.40 E-value=5.5e-13 Score=113.79 Aligned_cols=108 Identities=13% Similarity=0.031 Sum_probs=90.2
Q ss_pred HHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 204 NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 204 ~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
.+.+.++++|++.+. +++|.++++.|+|++|+..|+++++++|++ +.+|+++|.||..+|++++|+.+|++|++++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~---~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---VDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 345566777877665 599999999999999999999999999998 6899999999999999999999999999999
Q ss_pred CCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 283 YEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 283 p~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
|++..... .-.. .+....++.+++..|++.+.
T Consensus 101 P~~~~~~~-~lg~-~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 101 KNDYTPVF-HTGQ-CQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp SSCCHHHH-HHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHH-HHHH-HHHHcCCHHHHHHHHHHHHH
Confidence 99877332 2222 34556788888888888773
No 9
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.39 E-value=8.1e-13 Score=110.69 Aligned_cols=87 Identities=14% Similarity=0.007 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH-H
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA-L 275 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~-l 275 (334)
.+.++..|.++++++|++...+ ++|.++.+.|++++|+.+|+++++++|++ +.+|+++|.+|..+|++++|++. +
T Consensus 47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 47 YDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ---KDLVLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3556677777777777766654 77777777888888888888888777777 56777788777777777766654 5
Q ss_pred HHHHHcCCCCHH
Q 019871 276 EDALLAGYEDFK 287 (334)
Q Consensus 276 ekAIelgp~~~~ 287 (334)
++|++++|++..
T Consensus 124 ~~al~l~P~~~~ 135 (150)
T 4ga2_A 124 ERAAKLFPGSPA 135 (150)
T ss_dssp HHHHHHSTTCHH
T ss_pred HHHHHhCcCCHH
Confidence 777777777654
No 10
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.38 E-value=1.9e-12 Score=105.67 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
++|.++++.|+|++|+.+|++||+++|++ +.+|+|+|.||..+|++++|+.+|++||+++|++
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 67777777777777777777777777776 5677777777777777777777777777776653
No 11
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.37 E-value=1.1e-12 Score=114.62 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---------chHHHHHHHHHHHHCCChHHHHHHHHHHHHc----
Q 019871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---------SSVASYNVACCYSKLNQVKAGLSALEDALLA---- 281 (334)
Q Consensus 215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---------~~~a~yNlA~ay~~lG~~eeAl~~lekAIel---- 281 (334)
...++++|+.+++.|+|++|+.+|++||+++|++++ .+.+|+|+|.|+.++|++++|+.+|++||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 455679999999999999999999999999999421 1239999999999999999999999999999
Q ss_pred ---CCCCHH-H----HhcChhhHHHhcChHHHHHHHHHHHhhhc
Q 019871 282 ---GYEDFK-R----VRTDPDLENLRASEEFDVLLKRFDESFIN 317 (334)
Q Consensus 282 ---gp~~~~-~----i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~ 317 (334)
+|++.. | ....- .+....+|++++..|++.+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~---aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRAL---ALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHH---HHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHH---HHHHCCCHHHHHHHHHHHHhc
Confidence 999776 4 33332 356667899999999998844
No 12
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.36 E-value=7.7e-12 Score=110.35 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=82.3
Q ss_pred HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH-------------HHHHHHHHHHHHhhccCHHHHH-
Q 019871 156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV-------------REIQMQNYMKKKEQKERREQDL- 219 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l-------------~e~q~~~y~~~iel~~~~~~~~- 219 (334)
...|.++..+++..++++......+.. ...++.+.|.+.... .+.++..|.++++++|+....+
T Consensus 43 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 122 (217)
T 2pl2_A 43 YWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHL 122 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHH
Confidence 345666666666666665322111110 122344455444333 3445667777777777765554
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
++|.++..+|++++|+..|+++++++ ++ +.+|+++|.+|..+|++++|+.+|+++++++|++..
T Consensus 123 ~lg~~~~~~g~~~~A~~~~~~al~~~-~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 186 (217)
T 2pl2_A 123 QRGLVYALLGERDKAEASLKQALALE-DT---PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcc-cc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 77777777777777777777777777 55 567777777777777777777777777777777654
No 13
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.35 E-value=1e-11 Score=108.92 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=54.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 221 lG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
+|.++.++|+|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|+++|+++|++..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~ 123 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNN---VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 8888888888888888888888888887 578888888888888888888888888888888765
No 14
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=5e-12 Score=133.17 Aligned_cols=127 Identities=14% Similarity=0.075 Sum_probs=105.6
Q ss_pred HHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 019871 185 RAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC 261 (334)
Q Consensus 185 ~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~a 261 (334)
.++.|.|.++... .+.++..|.++++++|+...++ ++|.++.++|+|++|+.+|++||+++|++ +.+|+|+|.+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF---ADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Confidence 4456667666544 4778899999999999987765 99999999999999999999999999998 6899999999
Q ss_pred HHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 262 YSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 262 y~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
|..+|++++|+++|++||+++|++...... -.. .+....+|+++++.|++.+.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~-Lg~-~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSN-LAS-IHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHH-HHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999998763322 121 24456678888888887763
No 15
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.34 E-value=9.4e-12 Score=121.32 Aligned_cols=131 Identities=9% Similarity=0.004 Sum_probs=105.5
Q ss_pred HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH---HHHHHHHHHHHHhhccCHHHHH-HHHHHHHH
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV---REIQMQNYMKKKEQKERREQDL-REGLQLYR 227 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l---~e~q~~~y~~~iel~~~~~~~~-nlG~al~~ 227 (334)
+....|.++...++..++++......... ...+|.+.|.+...+ .+.++..|.++++++|+....+ ++|.++..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 45567888888888888887432111111 134566777666443 4567889999999999887765 99999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 228 ~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
+|+|++|+.+|+++|+++|++ ..+|+++|.+|..+|++++|+.+|++||+++|.+..
T Consensus 179 ~g~~~eAl~~~~kal~ldP~~---~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~ 235 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQDAKN---YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS 235 (382)
T ss_dssp HTCCTTHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred ccCHHHHHHHHHHHHHhCccC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999998 689999999999999999999999999999998776
No 16
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.34 E-value=2.1e-11 Score=102.19 Aligned_cols=87 Identities=11% Similarity=-0.020 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871 196 RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA 274 (334)
Q Consensus 196 ~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~ 274 (334)
+..+.++..|.+.++++|.+...+ ++|.++++.|+|++|+.+|+++++++|++ +.+|+++|.||..+|++++|+.+
T Consensus 35 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~ 111 (148)
T 2vgx_A 35 GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE---PRFPFHAAECLLQXGELAEAESG 111 (148)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHH
Confidence 334667788899999999877665 99999999999999999999999999998 57999999999999999999999
Q ss_pred HHHHHHcCCCC
Q 019871 275 LEDALLAGYED 285 (334)
Q Consensus 275 lekAIelgp~~ 285 (334)
|++|++++|++
T Consensus 112 ~~~al~~~p~~ 122 (148)
T 2vgx_A 112 LFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHCcCC
Confidence 99999999874
No 17
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.33 E-value=3.6e-12 Score=111.12 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Q 019871 196 RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKY----------EVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (334)
Q Consensus 196 ~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~y----------eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~ 264 (334)
...+.++..|.++++++|++.+.+ ++|.++.+.+++ ++|+.+|++||+++|++ ..+|||+|.+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~---~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK---DEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHH
Confidence 345667889999999999998876 799999999876 59999999999999998 6899999999998
Q ss_pred CC-----------ChHHHHHHHHHHHHcCCCC
Q 019871 265 LN-----------QVKAGLSALEDALLAGYED 285 (334)
Q Consensus 265 lG-----------~~eeAl~~lekAIelgp~~ 285 (334)
+| ++++|+++|++||+++|++
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 85 8999999999999999985
No 18
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.32 E-value=1.1e-11 Score=109.31 Aligned_cols=155 Identities=12% Similarity=0.037 Sum_probs=116.3
Q ss_pred HHhhhhHHHHhhcccchhhhhc-hhcHHH-HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHc-
Q 019871 155 RQRVGPLLMKMQKRYGKMEQTG-ELSEKE-IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRT- 228 (334)
Q Consensus 155 ~~R~G~V~lkLek~~~aie~~~-~l~ek~-~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~- 228 (334)
....|.++...+++.+++.... .+.... ...++.+.|.+.... .+.++..|.++++++|+....+ ++|.++.++
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 87 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALY 87 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Confidence 3467888888888888877422 111111 123455556555433 4667889999999999987665 999999999
Q ss_pred ----------CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHH
Q 019871 229 ----------GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENL 298 (334)
Q Consensus 229 ----------g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~L 298 (334)
|++++|+..|+++++++|++ +.+|+++|.+|..+|++++|+.+|++|++++ ++.... ..-.. .+
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~-~~la~-~~ 161 (217)
T 2pl2_A 88 RQAEDRERGKGYLEQALSVLKDAERVNPRY---APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIR-SALAE-LY 161 (217)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHH-HHHHH-HH
T ss_pred hhhhhhcccccCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHH-HHHHH-HH
Confidence 99999999999999999998 6899999999999999999999999999999 655522 22221 13
Q ss_pred hcChHHHHHHHHHHHhh
Q 019871 299 RASEEFDVLLKRFDESF 315 (334)
Q Consensus 299 r~dp~F~~lL~~~~e~~ 315 (334)
....+|.+++..|++.+
T Consensus 162 ~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKAL 178 (217)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 33457777777777766
No 19
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.31 E-value=7.4e-12 Score=102.10 Aligned_cols=98 Identities=12% Similarity=0.080 Sum_probs=82.9
Q ss_pred hhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHH
Q 019871 187 ERNSGVISN--RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEE----SSVASYNVA 259 (334)
Q Consensus 187 ~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e----~~~a~yNlA 259 (334)
+++.|+... +-.+.++..|.++++++|+....+ ++|.+++++|+|++|+..|+++|+++|++.. .+.+|+++|
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 444554443 334667889999999999987776 9999999999999999999999999998742 135899999
Q ss_pred HHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 260 CCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 260 ~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
.+|..+|++++|+++|++||+..|+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 9999999999999999999998775
No 20
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=1.2e-11 Score=103.48 Aligned_cols=87 Identities=7% Similarity=0.064 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
+.++..+.+++...|.... .+++|.+++++|+|++|+..|+++++++|++ +.+|+++|.||..+|++++|+.+|++
T Consensus 14 e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 14 ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD---PKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 3455677777766666544 3699999999999999999999999999998 68999999999999999999999999
Q ss_pred HHHcCCCCHHH
Q 019871 278 ALLAGYEDFKR 288 (334)
Q Consensus 278 AIelgp~~~~~ 288 (334)
||+++|++...
T Consensus 91 al~~~p~~~~~ 101 (150)
T 4ga2_A 91 SVELNPTQKDL 101 (150)
T ss_dssp HHHHCTTCHHH
T ss_pred HHHhCCCCHHH
Confidence 99999998773
No 21
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.5e-11 Score=98.06 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.++..|.+++++.|+....+ ++|.+++++|+|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|+
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 20 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---VRAYIRKATAQIAVKEYASALETLD 96 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4556778888888888876655 99999999999999999999999999998 6799999999999999999999999
Q ss_pred HHHHcCC
Q 019871 277 DALLAGY 283 (334)
Q Consensus 277 kAIelgp 283 (334)
++++++|
T Consensus 97 ~al~~~p 103 (126)
T 3upv_A 97 AARTKDA 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHhCc
Confidence 9999983
No 22
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.30 E-value=1.4e-11 Score=102.81 Aligned_cols=73 Identities=14% Similarity=-0.008 Sum_probs=66.4
Q ss_pred ccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 212 KERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 212 ~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.|..... +++|.+++++|+|++|+..|+++|+++|++ +.+|+++|.||..+|++++|+.+|++|++++|++..
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 132 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN---EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS 132 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH
Confidence 4454444 499999999999999999999999999998 689999999999999999999999999999999763
No 23
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.30 E-value=2.9e-11 Score=99.35 Aligned_cols=86 Identities=12% Similarity=0.015 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.++..|.+.++++|.+...+ ++|.++++.|+|++|+.+|+++++++|++ +.+|+++|.||..+|++++|+.+|+
T Consensus 34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (142)
T 2xcb_A 34 WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE---PRFPFHAAECHLQLGDLDGAESGFY 110 (142)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566778888899999876654 99999999999999999999999999998 5799999999999999999999999
Q ss_pred HHHHcCCCCH
Q 019871 277 DALLAGYEDF 286 (334)
Q Consensus 277 kAIelgp~~~ 286 (334)
++++++|++.
T Consensus 111 ~al~~~p~~~ 120 (142)
T 2xcb_A 111 SARALAAAQP 120 (142)
T ss_dssp HHHHHHHTCG
T ss_pred HHHHhCCCCc
Confidence 9999988743
No 24
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.29 E-value=1.5e-11 Score=102.97 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=89.6
Q ss_pred HHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 204 NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 204 ~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
.|.+++++.|++... +++|..+++.|+|++|+..|+++++++|++ +.+|+++|.||..+|++++|+.+|++|++++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 456677777876555 599999999999999999999999999998 6899999999999999999999999999999
Q ss_pred CCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 283 YEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 283 p~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
|++...... -. ..+....++.++++.|++.+.
T Consensus 86 p~~~~~~~~-lg-~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 86 IXEPRFPFH-AA-ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCTHHHHH-HH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHH-HH-HHHHHcCCHHHHHHHHHHHHH
Confidence 998763322 11 124455778888888887764
No 25
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.27 E-value=6.1e-11 Score=94.42 Aligned_cols=98 Identities=14% Similarity=0.186 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhh
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDL 295 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl 295 (334)
...+++|..+++.|+|++|+..|+++++++|++ +.+|+++|.||..+|++++|+.+|++|++++|.+......- ..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-g~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK-AT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH-HH
Confidence 345699999999999999999999999999998 68999999999999999999999999999999987632221 11
Q ss_pred HHHhcChHHHHHHHHHHHhhhch
Q 019871 296 ENLRASEEFDVLLKRFDESFINE 318 (334)
Q Consensus 296 ~~Lr~dp~F~~lL~~~~e~~~~~ 318 (334)
.+....+|.++++.|++.+..+
T Consensus 81 -~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 -AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp -HHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHhCHHHHHHHHHHHHHhC
Confidence 2344567888888888877544
No 26
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.27 E-value=1.5e-11 Score=99.69 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.++..|.++++++|+....+ .+|.++.++|++++|+.+|+++++++|++ ..+|+++|.+|..+|++++|+.+|+
T Consensus 33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~la~~~~~~g~~~~A~~~~~ 109 (121)
T 1hxi_A 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---IAVHAALAVSHTNEHNANAALASLR 109 (121)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456677777888888765554 88888888888888888888888888887 5688888888888888888888888
Q ss_pred HHHHcCCCC
Q 019871 277 DALLAGYED 285 (334)
Q Consensus 277 kAIelgp~~ 285 (334)
++++++|.+
T Consensus 110 ~al~~~P~~ 118 (121)
T 1hxi_A 110 AWLLSQPQY 118 (121)
T ss_dssp HHHC-----
T ss_pred HHHHhCcCC
Confidence 888888764
No 27
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=6.8e-11 Score=103.15 Aligned_cols=130 Identities=6% Similarity=0.023 Sum_probs=101.5
Q ss_pred HHHhhhhHHHHhhcccchhhhhc---hhcH-HHHHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHH
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG---ELSE-KEIIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQDL-REGLQLY 226 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~---~l~e-k~~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~ 226 (334)
.....|.++...+++.++++... ++.. .+ ...+.+.|.+.. +..+.++..|.++++++|+....+ ++|.+++
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD-SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC-cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 34567889999999988887432 2221 11 122333444443 334667889999999999987765 9999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 227 RTGKYEVAREKFESVLGSKPTPEE----SSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 227 ~~g~yeeAl~~fekALeldP~~~e----~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
.+|+|++|+..|+++++++|+++. ...+|+++|.++..+|++++|+.+|++|++++|+
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999831 0156999999999999999999999999999998
No 28
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.26 E-value=3.3e-11 Score=100.71 Aligned_cols=87 Identities=16% Similarity=0.041 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.++..|.++++++|.....+ ++|.+++++|+|++|+.+|+++++++|++ ..+|+++|.+|..+|++++|+.+|+
T Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~ 103 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY---SKAWSRLGLARFDMADYKGAKEAYE 103 (164)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4567788889999999876665 99999999999999999999999999998 6899999999999999999999999
Q ss_pred HHHHcCCCCHH
Q 019871 277 DALLAGYEDFK 287 (334)
Q Consensus 277 kAIelgp~~~~ 287 (334)
++++++|++..
T Consensus 104 ~al~~~p~~~~ 114 (164)
T 3sz7_A 104 KGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHSSSCC
T ss_pred HHHHhCCCchH
Confidence 99999998654
No 29
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.25 E-value=1.9e-11 Score=100.45 Aligned_cols=108 Identities=13% Similarity=0.120 Sum_probs=86.2
Q ss_pred HHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 204 NYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 204 ~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
.|.+.+++.|++... +.+|..+++.|+|++|+..|+++++++|++ +.+|+++|.||..+|++++|+.+|++|++++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 455566667766554 599999999999999999999999999998 6899999999999999999999999999999
Q ss_pred CCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 283 YEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 283 p~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
|++...... -. ..+....+|.++++.|++.+.
T Consensus 83 p~~~~~~~~-lg-~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 83 INEPRFPFH-AA-ECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCTHHHHH-HH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHH-HH-HHHHHcCCHHHHHHHHHHHHH
Confidence 998763322 11 124445678888888877663
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.24 E-value=2.5e-11 Score=118.36 Aligned_cols=129 Identities=9% Similarity=-0.002 Sum_probs=105.8
Q ss_pred HHhhhhHHHHhhc-ccchhhhhc---hhcHHHHHHHhhchhhhhhhHH--HHHHHHHHHHHhhccCHHHHH-HHHHHHHH
Q 019871 155 RQRVGPLLMKMQK-RYGKMEQTG---ELSEKEIIRAERNSGVISNRVR--EIQMQNYMKKKEQKERREQDL-REGLQLYR 227 (334)
Q Consensus 155 ~~R~G~V~lkLek-~~~aie~~~---~l~ek~~~~a~~n~g~~~~~l~--e~q~~~y~~~iel~~~~~~~~-nlG~al~~ 227 (334)
....|.++..+++ +.++++... ++..+. ..+|.+.|.+...+. +.++..|.++++++|++..++ ++|.++.+
T Consensus 134 ~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~ 212 (382)
T 2h6f_A 134 WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212 (382)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence 3457888889887 888887433 222221 356777887776664 557889999999999987765 99999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH-CCChHHH-----HHHHHHHHHcCCCCHH
Q 019871 228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK-LNQVKAG-----LSALEDALLAGYEDFK 287 (334)
Q Consensus 228 ~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~-lG~~eeA-----l~~lekAIelgp~~~~ 287 (334)
+|+|++|+.+|+++|+++|++ ..+|+++|.+|.. .|..++| +.+|++||+++|++..
T Consensus 213 ~g~~~eAl~~~~~al~l~P~~---~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~ 275 (382)
T 2h6f_A 213 FKLWDNELQYVDQLLKEDVRN---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES 275 (382)
T ss_dssp HTCCTTHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred cCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999999998 6899999999999 5555888 5999999999999875
No 31
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.24 E-value=1.8e-10 Score=109.02 Aligned_cols=100 Identities=10% Similarity=0.038 Sum_probs=85.6
Q ss_pred HHhhchhhhhhhH--HHHHHHHHHHHHhhccCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 019871 185 RAERNSGVISNRV--REIQMQNYMKKKEQKERR----------------EQDLREGLQLYRTGKYEVAREKFESVLGSKP 246 (334)
Q Consensus 185 ~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~----------------~~~~nlG~al~~~g~yeeAl~~fekALeldP 246 (334)
..+.+.|...... .+.++..|.+++++.|.. ...+++|.+++++|+|++|+.+|+++++++|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455556555433 466778888888888876 3445999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 247 TPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 247 ~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
++ ..+|+++|.+|..+|++++|+.+|++|++++|++..
T Consensus 228 ~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 228 NN---EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred Cc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 98 689999999999999999999999999999999765
No 32
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.23 E-value=1.6e-10 Score=94.18 Aligned_cols=87 Identities=17% Similarity=0.097 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.++..|.+.+++.|..... +++|.+++..|+|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|+
T Consensus 29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~ 105 (166)
T 1a17_A 29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYRRAASNMALGKFRAALRDYE 105 (166)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 455667788888888876555 499999999999999999999999999998 6899999999999999999999999
Q ss_pred HHHHcCCCCHH
Q 019871 277 DALLAGYEDFK 287 (334)
Q Consensus 277 kAIelgp~~~~ 287 (334)
++++++|.+..
T Consensus 106 ~a~~~~p~~~~ 116 (166)
T 1a17_A 106 TVVKVKPHDKD 116 (166)
T ss_dssp HHHHHSTTCHH
T ss_pred HHHHhCCCCHH
Confidence 99999998765
No 33
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.23 E-value=3.9e-11 Score=95.32 Aligned_cols=84 Identities=15% Similarity=0.144 Sum_probs=74.7
Q ss_pred HHHHHHHHHhh---ccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 201 QMQNYMKKKEQ---KERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 201 q~~~y~~~iel---~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
++..|.+++++ +|..... +++|.+++++|+|++|+..|+++++++|++ +.+++++|.||..+|++++|+..|+
T Consensus 9 A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 85 (117)
T 3k9i_A 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---QALRVFYAMVLYNLGRYEQGVELLL 85 (117)
T ss_dssp CHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45677788887 4655554 499999999999999999999999999998 6899999999999999999999999
Q ss_pred HHHHcCCCCHH
Q 019871 277 DALLAGYEDFK 287 (334)
Q Consensus 277 kAIelgp~~~~ 287 (334)
++++..|.+..
T Consensus 86 ~al~~~p~~~~ 96 (117)
T 3k9i_A 86 KIIAETSDDET 96 (117)
T ss_dssp HHHHHHCCCHH
T ss_pred HHHHhCCCcHH
Confidence 99999998654
No 34
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.21 E-value=2e-10 Score=98.84 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
..+++|.+++++|+|++|+.+|+++++++|++ ..+++++|.+|..+|++++|+.+|++|++++|.+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 34599999999999999999999999999998 689999999999999999999999999999998754
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.21 E-value=5.4e-10 Score=96.88 Aligned_cols=153 Identities=13% Similarity=0.140 Sum_probs=110.2
Q ss_pred HHHhhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhh--hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVIS--NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGK 230 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~ 230 (334)
+...+|.++..+++...+++........ ...+.+. .+..+.++..+.+.++..|.....+ ++|.+++..|+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTE------HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc------CchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 4456777888877777777643211110 0112222 2233455667777777777766554 99999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHH
Q 019871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKR 310 (334)
Q Consensus 231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~ 310 (334)
|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|+++++++|++......- . ..+....++.++++.
T Consensus 155 ~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l-~-~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK-A-TAQIAVKEYASALET 229 (258)
T ss_dssp HHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-H-HHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH-H-HHHHHHhhHHHHHHH
Confidence 999999999999999998 68999999999999999999999999999999977632221 1 123344677788777
Q ss_pred HHHhhhc
Q 019871 311 FDESFIN 317 (334)
Q Consensus 311 ~~e~~~~ 317 (334)
|++.+..
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776643
No 36
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=2.1e-10 Score=100.01 Aligned_cols=117 Identities=9% Similarity=0.109 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHHHhhcc-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871 196 RVREIQMQNYMKKKEQKE-RR-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 196 ~l~e~q~~~y~~~iel~~-~~-~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
+..+.++..|.+.+++.| .+ ...+++|.+++.+|+|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.
T Consensus 21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~ 97 (228)
T 4i17_A 21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---ANAYIGKSAAYRDMKNNQEYIA 97 (228)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---HHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---HHHHHHHHHHHHHcccHHHHHH
Confidence 334667888999999996 44 445699999999999999999999999999998 6899999999999999999999
Q ss_pred HHHHHHHcCCCCHHH------HhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 274 ALEDALLAGYEDFKR------VRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 274 ~lekAIelgp~~~~~------i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
.|+++++++|++... +...-.. ......+|+++++.|++.+.
T Consensus 98 ~~~~al~~~p~~~~~~~~~~~~~~~~g~-~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 98 TLTEGIKAVPGNATIEKLYAIYYLKEGQ-KFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHhH-HHHHhccHHHHHHHHHHHHh
Confidence 999999999997632 1111111 12345678888888888774
No 37
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.17 E-value=1.7e-10 Score=93.33 Aligned_cols=94 Identities=15% Similarity=0.159 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE 296 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~ 296 (334)
..+.+|..+++.|++++|+..|+++++++|++ +.+|+++|.+|..+|++++|+.+|++|++++|++...... -..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~-la~- 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA-LAV- 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH-
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHH-
Confidence 45799999999999999999999999999998 6899999999999999999999999999999998763221 111
Q ss_pred HHhcChHHHHHHHHHHHhh
Q 019871 297 NLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 297 ~Lr~dp~F~~lL~~~~e~~ 315 (334)
.+....++.+++..|++.+
T Consensus 94 ~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 2334456777777776655
No 38
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=1.3e-10 Score=101.75 Aligned_cols=152 Identities=9% Similarity=0.011 Sum_probs=96.7
Q ss_pred hhhhHHHHhhcccchhhhhc---hhcHHHHHHHhhc----------------hhhhhhh--HHHHHHHHHHHHHhhccCH
Q 019871 157 RVGPLLMKMQKRYGKMEQTG---ELSEKEIIRAERN----------------SGVISNR--VREIQMQNYMKKKEQKERR 215 (334)
Q Consensus 157 R~G~V~lkLek~~~aie~~~---~l~ek~~~~a~~n----------------~g~~~~~--l~e~q~~~y~~~iel~~~~ 215 (334)
..|..++..+++.++++... ++.... ..++.. .|.+... ..+.++..|.++++++|++
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 87 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDR-TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN 87 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHH-HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 35666777777777776422 222221 123333 5544433 3477789999999999998
Q ss_pred HHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCC--hHHHHHHHHHHHHcCCCCHHHHhcC
Q 019871 216 EQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQ--VKAGLSALEDALLAGYEDFKRVRTD 292 (334)
Q Consensus 216 ~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~--~eeAl~~lekAIelgp~~~~~i~~D 292 (334)
...+ ++|.+++..|++++|+.+|+++++++|++ +.+|+++|.+|...|+ .+.+...+++++...|....+...
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~- 163 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADN---LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD- 163 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHH-
Confidence 7765 99999999999999999999999999998 6788888888766543 344555666655433322111111
Q ss_pred hhhHHHhcChHHHHHHHHHHHhh
Q 019871 293 PDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 293 pdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
.+..+. ..+|.+++..|++.+
T Consensus 164 -g~~~~~-~~~~~~A~~~~~~al 184 (208)
T 3urz_A 164 -GLSKLF-TTRYEKARNSLQKVI 184 (208)
T ss_dssp -HHHHHH-HHTHHHHHHHHHHHT
T ss_pred -HHHHHH-ccCHHHHHHHHHHHH
Confidence 222111 245666666666665
No 39
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.17 E-value=4.8e-10 Score=96.04 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=102.0
Q ss_pred HhhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHH
Q 019871 156 QRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYE 232 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~ye 232 (334)
-..|.++...+++..+++........ ...++.+.|.+.... .+.++..|.+++++.|.....+ ++|.+++++|+|+
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 45788888888888888743322211 123455566555433 4667888999999999876654 9999999999999
Q ss_pred HHHHHHHHHHhcCCCCC-------------cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 233 VAREKFESVLGSKPTPE-------------ESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 233 eAl~~fekALeldP~~~-------------e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
+|+..|++++++.|++. ....+|+++|.+|..+|++++|+.+|++|++++|.+
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999999863 123799999999999999999999999999999974
No 40
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=3e-10 Score=104.50 Aligned_cols=166 Identities=11% Similarity=0.003 Sum_probs=114.4
Q ss_pred HHHhhhhHHHHhhcccchhhhhc-hhcHHH-------HHHHhhchhhhhhh---HHHHHHHHHHHHHhhccCH------H
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG-ELSEKE-------IIRAERNSGVISNR---VREIQMQNYMKKKEQKERR------E 216 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~-~l~ek~-------~~~a~~n~g~~~~~---l~e~q~~~y~~~iel~~~~------~ 216 (334)
+...+|.++..++++.++++... ++.... ....+.+.|.++.. ..+.++..|.+++++.|.. .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 45678889999988888887422 221110 12345566766643 3577788999999887742 2
Q ss_pred H-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhc
Q 019871 217 Q-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEES----SVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRT 291 (334)
Q Consensus 217 ~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~----~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~ 291 (334)
. ..++|.++.++|+|++|+..|++++++.|++... ..+|+++|.||..+|++++|+.+|+++++++|...... .
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~-~ 237 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR-E 237 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH-H
Confidence 2 3489999999999999999999999999987431 12789999999999999999999999999999854311 1
Q ss_pred ChhhHHH------hcChHHHHHHHHHHHhhhchhH
Q 019871 292 DPDLENL------RASEEFDVLLKRFDESFINENA 320 (334)
Q Consensus 292 Dpdl~~L------r~dp~F~~lL~~~~e~~~~~~a 320 (334)
...+..+ ....+|+++++.|++.+..+.+
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 1111111 1346799999999887655443
No 41
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.16 E-value=1.3e-10 Score=115.08 Aligned_cols=154 Identities=8% Similarity=-0.050 Sum_probs=115.8
Q ss_pred HHHhhhhHHHHhhcccchhhhhc---hhcHHHHHHHhhchhhhhhh-----------HHHHHHHHHHHHHhhccCHHHHH
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG---ELSEKEIIRAERNSGVISNR-----------VREIQMQNYMKKKEQKERREQDL 219 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~---~l~ek~~~~a~~n~g~~~~~-----------l~e~q~~~y~~~iel~~~~~~~~ 219 (334)
+...+|.++..++++..+++... ++... ..++.+.|.++.. ..+.++..|.+++++.|++...+
T Consensus 139 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 216 (474)
T 4abn_A 139 AWNQLGEVYWKKGDVTSAHTCFSGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSW 216 (474)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 44568889999888888887422 22222 1344455555433 34667889999999999876665
Q ss_pred -HHHHHHHHc--------CCHHHHHHHHHHHHhcCC---CCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 220 -REGLQLYRT--------GKYEVAREKFESVLGSKP---TPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 220 -nlG~al~~~--------g~yeeAl~~fekALeldP---~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
++|.++..+ |+|++|+.+|+++++++| ++ +.+|+++|.+|..+|++++|+.+|++|++++|++..
T Consensus 217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 293 (474)
T 4abn_A 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN---PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293 (474)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999 999999999999999999 76 789999999999999999999999999999999875
Q ss_pred HHhcChhhHHHhcChHHHHHHHHHHHh
Q 019871 288 RVRTDPDLENLRASEEFDVLLKRFDES 314 (334)
Q Consensus 288 ~i~~Dpdl~~Lr~dp~F~~lL~~~~e~ 314 (334)
....-. ..+....++.++++.+.+.
T Consensus 294 a~~~l~--~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 294 PQQREQ--QLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHH--HHHHHHHHHHHHHHHhccc
Confidence 221111 1223345777787776554
No 42
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.15 E-value=7.5e-10 Score=102.77 Aligned_cols=148 Identities=11% Similarity=0.059 Sum_probs=105.1
Q ss_pred HHhhhhHHHHhhcccchhhhhchhc---HHHHHHHhhchhhhh----hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHH
Q 019871 155 RQRVGPLLMKMQKRYGKMEQTGELS---EKEIIRAERNSGVIS----NRVREIQMQNYMKKKEQKERREQDL-REGLQLY 226 (334)
Q Consensus 155 ~~R~G~V~lkLek~~~aie~~~~l~---ek~~~~a~~n~g~~~----~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~ 226 (334)
....|.++.++++...++....... +... ......+.+. .+..+.+...|.+.++..|.+...+ ++|.++.
T Consensus 133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~ 211 (291)
T 3mkr_A 133 MAMTVQILLKLDRLDLARKELKKMQDQDEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM 211 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3456778888888887776322221 1110 0011112111 2445667788888888888877665 8999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHH-HHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHH
Q 019871 227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKA-GLSALEDALLAGYEDFKRVRTDPDLENLRASEEFD 305 (334)
Q Consensus 227 ~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~ee-Al~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~ 305 (334)
++|+|++|+..|+++++++|++ +.+|+|+|.++..+|+.++ +..+++++++++|++.... +...++..|.
T Consensus 212 ~~g~~~eA~~~l~~al~~~p~~---~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~------d~~~~~~~fd 282 (291)
T 3mkr_A 212 AQGRWEAAEGVLQEALDKDSGH---PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK------EYRAKENDFD 282 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH------HHHHHHHHHH
Confidence 9999999999999999999998 6799999999999999976 5688899999999976532 1233446788
Q ss_pred HHHHHHH
Q 019871 306 VLLKRFD 312 (334)
Q Consensus 306 ~lL~~~~ 312 (334)
+++.+|.
T Consensus 283 ~~~~~~~ 289 (291)
T 3mkr_A 283 RLVLQYA 289 (291)
T ss_dssp HHHHHHS
T ss_pred HHHHHcC
Confidence 8887774
No 43
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=5.3e-11 Score=123.42 Aligned_cols=154 Identities=10% Similarity=0.040 Sum_probs=115.6
Q ss_pred HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCC
Q 019871 156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQD-LREGLQLYRTGK 230 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~ 230 (334)
...|.++..++++.++++......+.. ...++.+.|.++... .+.++..|.++++++|++... +++|.++.++|+
T Consensus 437 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~ 516 (681)
T 2pzi_A 437 LMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN 516 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 446778888888888887433222221 235667777666555 467789999999999987665 499999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhc-------ChH
Q 019871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRA-------SEE 303 (334)
Q Consensus 231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~-------dp~ 303 (334)
|++ +..|++|++++|++ ..+|+|+|.+|..+|++++|+.+|++|++++|++.... .......+.. ..+
T Consensus 517 ~~~-~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~-~~~~~~~~~~~~~~~~~~~~ 591 (681)
T 2pzi_A 517 TDE-HKFYQTVWSTNDGV---ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTAR-LTSAVTLLSGRSTSEVTEEQ 591 (681)
T ss_dssp CCT-TCHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHH-HHHHHHTC-------CCHHH
T ss_pred hHH-HHHHHHHHHhCCch---HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHH-HHHHHHHHccCCCCCCCHHH
Confidence 999 99999999999998 67999999999999999999999999999999865522 1222221111 256
Q ss_pred HHHHHHHHHHh
Q 019871 304 FDVLLKRFDES 314 (334)
Q Consensus 304 F~~lL~~~~e~ 314 (334)
|.++++.+.+.
T Consensus 592 ~~~A~~~l~~~ 602 (681)
T 2pzi_A 592 IRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHhhC
Confidence 77777777554
No 44
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.14 E-value=3.7e-10 Score=111.59 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=83.6
Q ss_pred HHhhchhhhhhh--HHHHHHHHHHHHHhhccCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 019871 185 RAERNSGVISNR--VREIQMQNYMKKKEQKERR----------------EQDLREGLQLYRTGKYEVAREKFESVLGSKP 246 (334)
Q Consensus 185 ~a~~n~g~~~~~--l~e~q~~~y~~~iel~~~~----------------~~~~nlG~al~~~g~yeeAl~~fekALeldP 246 (334)
..+++.|+.... ..+.++..|.+++++.|.. ...+++|.+++++|+|++|+.+|++||+++|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 456666655543 3577889999999998886 3345999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 247 TPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 247 ~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
++ ..+||++|.||..+|++++|+.+|++|++++|++..
T Consensus 349 ~~---~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 349 AN---EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred cc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 98 689999999999999999999999999999998653
No 45
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.14 E-value=3.9e-10 Score=94.12 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE 296 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~ 296 (334)
..+.+|.++++.|+|++|+..|+++++++|++ +.+|+++|.||..+|++++|+.+|++||+++|.+...... -..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~- 87 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR-LGL- 87 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHH-
Confidence 45699999999999999999999999999998 6899999999999999999999999999999998763322 121
Q ss_pred HHhcChHHHHHHHHHHHhh
Q 019871 297 NLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 297 ~Lr~dp~F~~lL~~~~e~~ 315 (334)
.+....+|.++++.|++.+
T Consensus 88 ~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 2344567888888888776
No 46
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.13 E-value=5e-10 Score=88.38 Aligned_cols=89 Identities=11% Similarity=0.075 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhhccCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERRE----QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA 274 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~----~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~ 274 (334)
+.++..|.+.++..|+.. ..+.+|.++++.|+|++|+..|+++++.+|++...+.+++++|.||..+|++++|+..
T Consensus 19 ~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~ 98 (129)
T 2xev_A 19 DDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQT 98 (129)
T ss_dssp HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445566777777777765 4569999999999999999999999999999854357899999999999999999999
Q ss_pred HHHHHHcCCCCHH
Q 019871 275 LEDALLAGYEDFK 287 (334)
Q Consensus 275 lekAIelgp~~~~ 287 (334)
|+++++..|++..
T Consensus 99 ~~~~~~~~p~~~~ 111 (129)
T 2xev_A 99 LQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHSTTSHH
T ss_pred HHHHHHHCCCChH
Confidence 9999999998654
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.12 E-value=1.7e-09 Score=95.06 Aligned_cols=99 Identities=19% Similarity=0.192 Sum_probs=84.3
Q ss_pred Hhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Q 019871 186 AERNSGVISN--RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCY 262 (334)
Q Consensus 186 a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay 262 (334)
.+.+.|.+.. +..+.+...|.+.+++.|.....+ ++|.+++..|+|++|+..|+++++++|++ ..+|+++|.+|
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~ 121 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc---cHHHHHHHHHH
Confidence 3444444443 334667788999999999876654 99999999999999999999999999998 57999999999
Q ss_pred HHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 263 SKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 263 ~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
..+|++++|+..|+++++++|.+..
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~ 146 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDPNDPF 146 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCChH
Confidence 9999999999999999999999764
No 48
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.12 E-value=3.1e-10 Score=86.47 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchH-HHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSV-ASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLEN 297 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~-a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~ 297 (334)
+++|..+++.|+|++|+..|+++++.+|++ .. +|+++|.||..+|++++|+.+|++|++++|++......
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------ 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------ 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH------
Confidence 578999999999999999999999999998 67 99999999999999999999999999999997653211
Q ss_pred HhcChHHHHHHHHHHHhh
Q 019871 298 LRASEEFDVLLKRFDESF 315 (334)
Q Consensus 298 Lr~dp~F~~lL~~~~e~~ 315 (334)
..+.+++..|++..
T Consensus 75 ----~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 75 ----KMVMDILNFYNKDM 88 (99)
T ss_dssp ----HHHHHHHHHHCCTT
T ss_pred ----HHHHHHHHHHHHHh
Confidence 35677777776554
No 49
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.12 E-value=2.6e-10 Score=89.63 Aligned_cols=81 Identities=16% Similarity=0.060 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871 201 QMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI 279 (334)
++..|.+.++.+|.+... +++|.+++..|+|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|++|+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---SVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346788888899987665 499999999999999999999999999998 6899999999999999999999999999
Q ss_pred HcCCC
Q 019871 280 LAGYE 284 (334)
Q Consensus 280 elgp~ 284 (334)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 99775
No 50
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.12 E-value=3.7e-10 Score=90.07 Aligned_cols=84 Identities=12% Similarity=0.078 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.++..|.+.+++.|.....+ ++|.+++.+|+|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|+
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS---VKAHFFLGQCQLEMESYDEAIANLQ 101 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4556677888888888876654 99999999999999999999999999998 6799999999999999999999999
Q ss_pred HHHHcCCC
Q 019871 277 DALLAGYE 284 (334)
Q Consensus 277 kAIelgp~ 284 (334)
+|++++|+
T Consensus 102 ~a~~~~p~ 109 (137)
T 3q49_B 102 RAYSLAKE 109 (137)
T ss_dssp HHHHHHHH
T ss_pred HHHHHChh
Confidence 99999876
No 51
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.10 E-value=5.2e-10 Score=87.58 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
+.++..|.+.++..|..... +++|.+++..|++++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|++
T Consensus 33 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 33 PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF---IKGYTRKAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44556667777777766554 489999999999999999999999999987 67999999999999999999999999
Q ss_pred HHHcCCCCH
Q 019871 278 ALLAGYEDF 286 (334)
Q Consensus 278 AIelgp~~~ 286 (334)
+++++|.+.
T Consensus 110 ~~~~~p~~~ 118 (133)
T 2lni_A 110 ALDLDSSCK 118 (133)
T ss_dssp HHHHCGGGT
T ss_pred HHHhCCCch
Confidence 999988753
No 52
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.10 E-value=3e-10 Score=87.12 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
...+++|.+++..|+|++|+..|+++++++|++ +.+|+++|.||..+|++++|+.+|++|++++|++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 345699999999999999999999999999998 6899999999999999999999999999999986
No 53
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.10 E-value=2e-10 Score=89.53 Aligned_cols=70 Identities=11% Similarity=0.181 Sum_probs=62.6
Q ss_pred ccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 212 KERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 212 ~~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
+|++.. .+++|.++++.|+|++|+..|+++++++|++ ..+|+++|.||..+|++++|+.+|++|+++.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY---VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 455544 4599999999999999999999999999998 579999999999999999999999999998664
No 54
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.10 E-value=2.4e-09 Score=99.25 Aligned_cols=155 Identities=11% Similarity=0.075 Sum_probs=107.6
Q ss_pred HhhhhHHHHhhcccchhhhhch---hcHHHHHHHhhc----------hhhh--hhhHHHHHHHHHHHHHhhccC--HHH-
Q 019871 156 QRVGPLLMKMQKRYGKMEQTGE---LSEKEIIRAERN----------SGVI--SNRVREIQMQNYMKKKEQKER--REQ- 217 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~~~~---l~ek~~~~a~~n----------~g~~--~~~l~e~q~~~y~~~iel~~~--~~~- 217 (334)
..+|.++..++++.++++.... +.... ...+.+ .+.+ ..+..+.++..|.+.+++.|. +..
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKY-KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-HCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccc-hHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 4567777777777777663221 11111 001111 1222 234456677888899999887 544
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLEN 297 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~ 297 (334)
.+++|.++.+.|+|++|+..|+++++++|++ +.+|+++|.+|..+|++++|+..|++|++++|++......- .. .
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-~~-~ 290 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPED---YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL-GI-S 290 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-HH-H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH-HH-H
Confidence 4599999999999999999999999999998 68999999999999999999999999999999976532221 11 1
Q ss_pred HhcChHHHHHHHHHHHhhh
Q 019871 298 LRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 298 Lr~dp~F~~lL~~~~e~~~ 316 (334)
+....++.+++..|++.+.
T Consensus 291 ~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHTCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 2233466677776666653
No 55
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.09 E-value=1.3e-09 Score=83.03 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.+...|.+.++..|..... +++|.+++..|+|++|+..|+++++++|++ ..+++++|.+|..+|++++|+.+|+
T Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---GKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345667777888888876555 499999999999999999999999999998 6799999999999999999999999
Q ss_pred HHHHcCCCCHH
Q 019871 277 DALLAGYEDFK 287 (334)
Q Consensus 277 kAIelgp~~~~ 287 (334)
++++++|.+..
T Consensus 97 ~~~~~~~~~~~ 107 (118)
T 1elw_A 97 EGLKHEANNPQ 107 (118)
T ss_dssp HHHTTCTTCHH
T ss_pred HHHHcCCCCHH
Confidence 99999998654
No 56
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.09 E-value=8.4e-10 Score=103.38 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
+.++..|.+++++.|+....+ ++|.++++.|++++|+..|+++++++|++ +.+|+++|.+|...|++++|+..|++
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF---PDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC---HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445566777777777655443 77777777888888888888888777776 56777778777777888888888888
Q ss_pred HHHcCCCCHH
Q 019871 278 ALLAGYEDFK 287 (334)
Q Consensus 278 AIelgp~~~~ 287 (334)
++++.|.+..
T Consensus 297 al~~~p~~~~ 306 (388)
T 1w3b_A 297 ALRLCPTHAD 306 (388)
T ss_dssp HHHHCTTCHH
T ss_pred HHhhCcccHH
Confidence 8777777654
No 57
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.09 E-value=4.1e-10 Score=93.80 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGS------------------KPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALel------------------dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
...++|..+++.|+|++|+..|++++++ +|.+ ..+|+|+|.||.++|++++|+.+|++|
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN---IPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH---HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH---HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4559999999999999999999999999 5554 679999999999999999999999999
Q ss_pred HHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 279 LLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 279 Ielgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
|+++|.+...+..- . ..+....+|.+++..|++.+
T Consensus 90 l~~~p~~~~a~~~~-g-~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 90 LKREETNEKALFRR-A-KARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHSTTCHHHHHHH-H-HHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHH-H-HHHHHHhcHHHHHHHHHHHH
Confidence 99999988733221 1 12445578999999998887
No 58
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.09 E-value=3.3e-09 Score=86.77 Aligned_cols=131 Identities=11% Similarity=0.081 Sum_probs=98.8
Q ss_pred HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhh--hhHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHc
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVIS--NRVREIQMQNYMKKKEQKERREQD-LREGLQLYRT 228 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~ 228 (334)
+....|.++...++...+++......... ....+...+.+. .+..+.+...+.+.++..|..... +.+|..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 44567778888888887776432211110 112233334333 233455677788888888876555 4999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 229 g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
|++++|+..|+++++.+|++ ..+++++|.+|..+|++++|+..++++++.+|.+..
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 145 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK 145 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cCHHHHHHHHHHHHhcCcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH
Confidence 99999999999999999998 689999999999999999999999999999998754
No 59
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.3e-09 Score=87.04 Aligned_cols=86 Identities=9% Similarity=0.059 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA 274 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~ 274 (334)
+.++..|.+.+++.|+. ...+++|.+++..|+|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+
T Consensus 45 ~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~ 121 (148)
T 2dba_A 45 GGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD---VKALYRRSQALEKLGRLDQAVLD 121 (148)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC---HHHHHHHHHHHHHcCCHHHHHHH
Confidence 34556677777777774 334599999999999999999999999999998 68999999999999999999999
Q ss_pred HHHHHHcCCCCHH
Q 019871 275 LEDALLAGYEDFK 287 (334)
Q Consensus 275 lekAIelgp~~~~ 287 (334)
|+++++++|++..
T Consensus 122 ~~~al~~~p~~~~ 134 (148)
T 2dba_A 122 LQRCVSLEPKNKV 134 (148)
T ss_dssp HHHHHHHCSSCHH
T ss_pred HHHHHHcCCCcHH
Confidence 9999999998654
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.08 E-value=2.2e-10 Score=113.44 Aligned_cols=156 Identities=10% Similarity=-0.014 Sum_probs=116.1
Q ss_pred HHhhhhHHHHhhcc-cchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHHHHHHHHHHc-
Q 019871 155 RQRVGPLLMKMQKR-YGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDLREGLQLYRT- 228 (334)
Q Consensus 155 ~~R~G~V~lkLek~-~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~nlG~al~~~- 228 (334)
....|.++..++++ .++++......+.+ ...++.+.|.++... .+.++..|.++++++|+.....++|.++..+
T Consensus 105 ~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~ 184 (474)
T 4abn_A 105 LMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQ 184 (474)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhc
Confidence 34567777777777 77776432111111 124556666665544 4667889999999999965556999999999
Q ss_pred --------CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC--------CChHHHHHHHHHHHHcCC---CCHHHH
Q 019871 229 --------GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL--------NQVKAGLSALEDALLAGY---EDFKRV 289 (334)
Q Consensus 229 --------g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l--------G~~eeAl~~lekAIelgp---~~~~~i 289 (334)
|+|++|+..|+++++++|++ +.+|+++|.+|..+ |++++|+.+|++|++++| .+....
T Consensus 185 ~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 261 (474)
T 4abn_A 185 TDSGDEHSRHVMDSVRQAKLAVQMDVLD---GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261 (474)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHH
T ss_pred cCChhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHH
Confidence 99999999999999999998 68999999999999 999999999999999999 666532
Q ss_pred hcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 290 RTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 290 ~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
.. -.. .+....+|.++++.|++.+
T Consensus 262 ~~-lg~-~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 262 LN-RAT-LHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HH-HHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HH-HHH-HHHHcCCHHHHHHHHHHHH
Confidence 22 121 2333467777777777765
No 61
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.08 E-value=1.6e-09 Score=101.50 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=106.4
Q ss_pred HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhh--HHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC
Q 019871 156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNR--VREIQMQNYMKKKEQKERREQDL-REGLQLYRTGK 230 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~--l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~ 230 (334)
...|.++..+++...+++......... ....+.+.|.+... ..+.++..|.+++++.|+....+ ++|.++...|+
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 346666777666666665322111110 01234444444332 24566788888889999876655 99999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHH
Q 019871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKR 310 (334)
Q Consensus 231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~ 310 (334)
|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+..|+++++++|++......- . ..+....++.++++.
T Consensus 219 ~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-~-~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 219 FDRAVAAYLRALSLSPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL-A-NALKEKGSVAEAEDC 293 (388)
T ss_dssp TTHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH-H-HHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-H-HHHHHcCCHHHHHHH
Confidence 999999999999999988 67999999999999999999999999999999876532111 1 112233456666665
Q ss_pred HHHhh
Q 019871 311 FDESF 315 (334)
Q Consensus 311 ~~e~~ 315 (334)
|++.+
T Consensus 294 ~~~al 298 (388)
T 1w3b_A 294 YNTAL 298 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 62
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.07 E-value=1.7e-09 Score=86.14 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChh
Q 019871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPD 294 (334)
Q Consensus 215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpd 294 (334)
....+.+|..++..|+|++|+..|+++++++|++ +.+|+++|.||..+|++++|+.+|++|++++|.+...... -.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~ 84 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF-LG 84 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH-HH
Confidence 3455699999999999999999999999999998 6899999999999999999999999999999997763221 11
Q ss_pred hHHHhcChHHHHHHHHHHHhhh
Q 019871 295 LENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 295 l~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
. .+....+|.+++..|.+.+.
T Consensus 85 ~-~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 Q-CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp H-HHHHTTCHHHHHHHHHHHHH
T ss_pred H-HHHHHhhHHHHHHHHHHHHH
Confidence 1 23345677888877777663
No 63
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.06 E-value=1.2e-09 Score=82.82 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHC-CChHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPT--PEESSVASYNVACCYSKL-NQVKAGLS 273 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~--~~e~~~a~yNlA~ay~~l-G~~eeAl~ 273 (334)
.+.++..|.+.+++.|..... +++|.+++..|+|++|+..|+++++++|+ + ..+|+++|.+|..+ |++++|++
T Consensus 22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~ 98 (112)
T 2kck_A 22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN---KDVWAAKADALRYIEGKEVEAEI 98 (112)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC---HHHHHHHHHHHTTCSSCSHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch---HHHHHHHHHHHHHHhCCHHHHHH
Confidence 345667777788888876554 48999999999999999999999999998 6 67899999999999 99999999
Q ss_pred HHHHHHHcCCCC
Q 019871 274 ALEDALLAGYED 285 (334)
Q Consensus 274 ~lekAIelgp~~ 285 (334)
+++++++.+|..
T Consensus 99 ~~~~~~~~~p~~ 110 (112)
T 2kck_A 99 AEARAKLEHHHH 110 (112)
T ss_dssp HHHHHGGGCCCC
T ss_pred HHHHHhhcccCC
Confidence 999999988864
No 64
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.06 E-value=5.1e-09 Score=90.33 Aligned_cols=157 Identities=10% Similarity=0.053 Sum_probs=108.2
Q ss_pred HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHc
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQD-LREGLQLYRT 228 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~ 228 (334)
+....|.++...++...+++......... ....+...+.+.. +..+.++..+.+.++..|..... +.+|.++++.
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 44567778888888877776432211110 0122333443332 23456677888888888876555 4999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHH
Q 019871 229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLL 308 (334)
Q Consensus 229 g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL 308 (334)
|++++|+..|+++++.+|++ ..+++++|.+|..+|++++|+..|+++++.+|.+......- . ..+....++.+++
T Consensus 139 ~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-a-~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 139 EQPKLALPYLQRAVELNEND---TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA-G-VTYAYKENREKAL 213 (243)
T ss_dssp SCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHH-H-HHHHHTTCTTHHH
T ss_pred ccHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH-H-HHHHHccCHHHHH
Confidence 99999999999999999987 67999999999999999999999999999999866522111 1 1122234555555
Q ss_pred HHHHHhh
Q 019871 309 KRFDESF 315 (334)
Q Consensus 309 ~~~~e~~ 315 (334)
+.|++.+
T Consensus 214 ~~~~~~~ 220 (243)
T 2q7f_A 214 EMLDKAI 220 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 65
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.05 E-value=3.1e-09 Score=82.22 Aligned_cols=87 Identities=18% Similarity=0.121 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.++..|.+.++..|..... +.+|.+++..|+|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|+
T Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~ 104 (131)
T 2vyi_A 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY---SKAYGRMGLALSSLNKHVEAVAYYK 104 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345667777788888876555 499999999999999999999999999998 6799999999999999999999999
Q ss_pred HHHHcCCCCHH
Q 019871 277 DALLAGYEDFK 287 (334)
Q Consensus 277 kAIelgp~~~~ 287 (334)
++++++|.+..
T Consensus 105 ~~~~~~p~~~~ 115 (131)
T 2vyi_A 105 KALELDPDNET 115 (131)
T ss_dssp HHHHHSTTCHH
T ss_pred HHHhcCccchH
Confidence 99999998654
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=1.6e-09 Score=96.77 Aligned_cols=129 Identities=13% Similarity=0.063 Sum_probs=77.6
Q ss_pred HhhhhHHHHhhcccchhhhhchhcH---HH--HHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCH---H-HHHHHHHH
Q 019871 156 QRVGPLLMKMQKRYGKMEQTGELSE---KE--IIRAERNSGVISN--RVREIQMQNYMKKKEQKERR---E-QDLREGLQ 224 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~~~~l~e---k~--~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~---~-~~~nlG~a 224 (334)
-..|.+++..+++.++++....... .. ...++...|.+.. +..+.++..|.+.+++.|+. . ..+.+|.+
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence 3456666666666666653221111 11 1233334444433 23355666777777776632 2 23477777
Q ss_pred HHH--------cCCHHHHHHHHHHHHhcCCCCCcchHHH--------------HHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 225 LYR--------TGKYEVAREKFESVLGSKPTPEESSVAS--------------YNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 225 l~~--------~g~yeeAl~~fekALeldP~~~e~~~a~--------------yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
+++ .|++++|+..|+++++.+|++.....++ +++|.+|..+|++++|+..|+++++..
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 777 7777777777777777777764322232 777777777777777777777777777
Q ss_pred CC
Q 019871 283 YE 284 (334)
Q Consensus 283 p~ 284 (334)
|+
T Consensus 179 p~ 180 (261)
T 3qky_A 179 PD 180 (261)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 67
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.03 E-value=1.8e-09 Score=81.78 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC--CHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE--DFK 287 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~--~~~ 287 (334)
.+.+|.+++..|+|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|+++++++|. +..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 77 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD 77 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH
Confidence 3589999999999999999999999999998 679999999999999999999999999999998 543
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.03 E-value=5.7e-09 Score=88.48 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhccCHHHH-HHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQD-LREGLQLYRT-GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~-g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
+.+...|.+.+++.|..... +++|.+++.. |++++|+..|+++++ .|.++....+|+++|.+|..+|++++|+..|+
T Consensus 59 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 137 (225)
T 2vq2_A 59 DKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLK 137 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444455555555544333 2555555555 555555555555555 22222124455555555555555555555555
Q ss_pred HHHHcCCCCH
Q 019871 277 DALLAGYEDF 286 (334)
Q Consensus 277 kAIelgp~~~ 286 (334)
++++.+|.+.
T Consensus 138 ~~~~~~~~~~ 147 (225)
T 2vq2_A 138 RSLAAQPQFP 147 (225)
T ss_dssp HHHHHSTTCH
T ss_pred HHHHhCCCCc
Confidence 5555555543
No 69
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.03 E-value=2.5e-10 Score=113.76 Aligned_cols=114 Identities=14% Similarity=0.098 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871 196 RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA 274 (334)
Q Consensus 196 ~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~ 274 (334)
+..+.++..|.++++++|+....+ ++|.+++++|+|++|+..|++|++++|++ +.+|+++|.+|..+|++++|+++
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Confidence 345667889999999999876665 99999999999999999999999999998 68999999999999999999999
Q ss_pred HHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHH
Q 019871 275 LEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFD 312 (334)
Q Consensus 275 lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~ 312 (334)
|++|++++|++......-.....+....+|+++++.++
T Consensus 97 ~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999986542221111112333456666666655
No 70
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.02 E-value=5.2e-09 Score=90.23 Aligned_cols=132 Identities=16% Similarity=0.049 Sum_probs=87.6
Q ss_pred HHHHHhhhhHHHHhhcccchhhhhchh---cHHHHHHHhhchhhhh--hhHHHHHHHHHHHHHhhccCHHHH-HHHHHHH
Q 019871 152 YTIRQRVGPLLMKMQKRYGKMEQTGEL---SEKEIIRAERNSGVIS--NRVREIQMQNYMKKKEQKERREQD-LREGLQL 225 (334)
Q Consensus 152 sai~~R~G~V~lkLek~~~aie~~~~l---~ek~~~~a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~-~nlG~al 225 (334)
.......|.++...+++..+++..... .... ...+...+.+. .+..+.++..+.+.+++.|..... +.+|.++
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 334566777888888888777642211 1111 22333344333 233466778888888888876655 4999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 226 ~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
...|++++|+..|+++++.+|++ ..+++++|.+|..+|++++|+..|+++++..|.+..
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 160 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence 99999999999999999999998 679999999999999999999999999999998765
No 71
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=2.7e-09 Score=95.25 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHHHhhccCH---HH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH------
Q 019871 195 NRVREIQMQNYMKKKEQKERR---EQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK------ 264 (334)
Q Consensus 195 ~~l~e~q~~~y~~~iel~~~~---~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~------ 264 (334)
.+..+.++..|.+.++..|.. .. .+.+|.+++++|+|++|+..|+++++++|+++....++|++|.||..
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~ 107 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE 107 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence 334466778888899988876 44 46999999999999999999999999999876657899999999999
Q ss_pred --CCChHHHHHHHHHHHHcCCCCH
Q 019871 265 --LNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 265 --lG~~eeAl~~lekAIelgp~~~ 286 (334)
+|++++|+..|+++++..|++.
T Consensus 108 ~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 108 LDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred ccchhHHHHHHHHHHHHHHCcCch
Confidence 9999999999999999999864
No 72
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.01 E-value=3.1e-09 Score=106.31 Aligned_cols=83 Identities=11% Similarity=0.009 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871 201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI 279 (334)
+...|.++++++|+....+ ++|.+++++|+|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+++|++|+
T Consensus 42 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al 118 (568)
T 2vsy_A 42 GEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH---PGIALWLGHALEDAGQAEAAAAAYTRAH 118 (568)
T ss_dssp HHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444443332 45555555555555555555555555544 3445555555555555555555555555
Q ss_pred HcCCCCH
Q 019871 280 LAGYEDF 286 (334)
Q Consensus 280 elgp~~~ 286 (334)
+++|++.
T Consensus 119 ~~~p~~~ 125 (568)
T 2vsy_A 119 QLLPEEP 125 (568)
T ss_dssp HHCTTCH
T ss_pred HhCCCCH
Confidence 5555443
No 73
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.01 E-value=7.4e-10 Score=97.74 Aligned_cols=128 Identities=14% Similarity=0.140 Sum_probs=96.8
Q ss_pred HhhhhHHHHhhcccchhhhhchhcHH---H-H-HHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHH
Q 019871 156 QRVGPLLMKMQKRYGKMEQTGELSEK---E-I-IRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYR 227 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~~~~l~ek---~-~-~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~ 227 (334)
...|.++..++++..+++......+. . . ..++.+.|.+.... .+.++..|.+.+++.|.....+ ++|.+++.
T Consensus 41 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 120 (272)
T 3u4t_A 41 NRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 45677888888888887743211111 0 0 12244455444333 4667788999999998876554 99999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH-HHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 228 TGKYEVAREKFESVLGSKPTPEESSVASYNVA-CCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 228 ~g~yeeAl~~fekALeldP~~~e~~~a~yNlA-~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.|+|++|+..|+++++++|++ ..+|+++| .+|.. +++++|+..|+++++++|++..
T Consensus 121 ~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~ 177 (272)
T 3u4t_A 121 KGNFPLAIQYMEKQIRPTTTD---PKVFYELGQAYYYN-KEYVKADSSFVKVLELKPNIYI 177 (272)
T ss_dssp TTCHHHHHHHHGGGCCSSCCC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHH
T ss_pred ccCHHHHHHHHHHHhhcCCCc---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCccchH
Confidence 999999999999999999998 68999999 66665 5999999999999999998765
No 74
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.00 E-value=8.4e-09 Score=90.10 Aligned_cols=130 Identities=14% Similarity=0.073 Sum_probs=70.9
Q ss_pred HHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcC
Q 019871 155 RQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQD-LREGLQLYRTG 229 (334)
Q Consensus 155 ~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g 229 (334)
....|.++...++...+++......+.. ....+...+.+.. +..+.++..|.+.+++.|..... +++|.+++..|
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence 3455666666666666655322111100 0112222332222 22344455566666666654443 36666667777
Q ss_pred CHHHHHHHHHHHHh--cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 230 KYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 230 ~yeeAl~~fekALe--ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
++++|+..|+++++ .+|.+ ..+++++|.+|..+|++++|+..|+++++.+|.+..
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPER---SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS 176 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred HHHHHHHHHHHHHhCccCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH
Confidence 77777777777766 44444 456666777777777777777777777766666543
No 75
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=7.2e-09 Score=79.94 Aligned_cols=64 Identities=23% Similarity=0.343 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
.+|..+...|++++|+..|++++..+|.+ ..+++++|.+|...|++++|+..++++++.+|.+.
T Consensus 40 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 103 (136)
T 2fo7_A 40 NLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 103 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 44555555555555555555555555544 34455555555555555555555555555554443
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=2.7e-09 Score=98.07 Aligned_cols=161 Identities=9% Similarity=-0.094 Sum_probs=113.6
Q ss_pred HHHhhhhHHHHhhcccchhhhhc-hhcH--H-----HHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCH------H-
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG-ELSE--K-----EIIRAERNSGVISNRV--REIQMQNYMKKKEQKERR------E- 216 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~-~l~e--k-----~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~------~- 216 (334)
...+.|.++..++++.++++... .+.. + ....++.+.|.++..+ .+.++..|.+++++.+.. .
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34778999999999999988432 2221 1 1134566677666544 466778899999887642 2
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH----
Q 019871 217 QDLREGLQLYRT-GKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR---- 288 (334)
Q Consensus 217 ~~~nlG~al~~~-g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~---- 288 (334)
...++|.++... |+|++|+.+|++|+++.|+... ...+++++|.+|..+|++++|+.+|++++++.|.+...
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 234999999996 9999999999999999886531 13579999999999999999999999999999875321
Q ss_pred --HhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 289 --VRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 289 --i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+...-.+ .+...+++..++..|++.+
T Consensus 199 ~~~~~~lg~-~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 199 KDYFLKKGL-CQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHH-HHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 1111111 1233456667776666655
No 77
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.99 E-value=1.7e-09 Score=90.70 Aligned_cols=86 Identities=7% Similarity=0.009 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhhccCHHHH-HHHHHH-HHHcCCH--HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQD-LREGLQ-LYRTGKY--EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~-~nlG~a-l~~~g~y--eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
.+.++..|.+.+++.|..... +++|.+ ++..|++ ++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.
T Consensus 60 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~ 136 (177)
T 2e2e_A 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE---ITALMLLASDAFMQANYAQAIE 136 (177)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcccHHHHHH
Confidence 456678888888888877655 499999 7799999 99999999999999998 6799999999999999999999
Q ss_pred HHHHHHHcCCCCH
Q 019871 274 ALEDALLAGYEDF 286 (334)
Q Consensus 274 ~lekAIelgp~~~ 286 (334)
.|+++++++|.+.
T Consensus 137 ~~~~al~~~p~~~ 149 (177)
T 2e2e_A 137 LWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHTCCTTS
T ss_pred HHHHHHhhCCCCc
Confidence 9999999999853
No 78
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.99 E-value=3e-09 Score=92.10 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=94.4
Q ss_pred hhhHHHHhhcccchhhhhch---hcHHHHHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCH
Q 019871 158 VGPLLMKMQKRYGKMEQTGE---LSEKEIIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKY 231 (334)
Q Consensus 158 ~G~V~lkLek~~~aie~~~~---l~ek~~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~y 231 (334)
.+.++..+++...+++.... ..... ...+.+.|.+.. +..+.++..|.+.+++.|.....+ ++|.++++.|+|
T Consensus 111 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 189 (258)
T 3uq3_A 111 TADILTKLRNAEKELKKAEAEAYVNPEK-AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF 189 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHcCcch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCH
Confidence 35566676666666653221 22221 233444554443 334667888999999999876654 999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 232 eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp 283 (334)
++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|++|++++|
T Consensus 190 ~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 190 PEAIADCNKAIEKDPNF---VRAYIRKATAQIAVKEYASALETLDAARTKDA 238 (258)
T ss_dssp HHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence 99999999999999998 68999999999999999999999999999983
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.99 E-value=4.5e-09 Score=85.96 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=98.1
Q ss_pred HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHc
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQD-LREGLQLYRT 228 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~ 228 (334)
+....|.++...++...+++......... ....+.+.+.+.... .+.+...+.+.++..|..... +.+|.+++..
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 123 (186)
T 3as5_A 44 VALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL 123 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc
Confidence 34567778888888777776432221110 112333444443332 355667788888888876555 4999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCH
Q 019871 229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 229 g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~ 286 (334)
|++++|+..|+++++.+|++ ..+++++|.+|..+|++++|+.+++++++++|++.
T Consensus 124 ~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 124 GRFDEAIDSFKIALGLRPNE---GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred CcHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 99999999999999999998 68999999999999999999999999999988753
No 80
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.99 E-value=7.9e-09 Score=94.91 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhhccC--HHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871 198 REIQMQNYMKKKEQKER--REQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA 274 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~--~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~ 274 (334)
.+.++..|.+.+++.|. ... .+++|.++++.|+|++|+..|+++++++|++ +.+|+++|.+|..+|++++|+..
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---YLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHcCCHHHHHHH
Confidence 35556777778888887 444 4588999999999999999999999999987 67899999999999999999999
Q ss_pred HHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 275 LEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 275 lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
|+++++++|.+...... -.. .+....+|.+++..|++.+
T Consensus 274 ~~~al~~~~~~~~~~~~-l~~-~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 274 YRRALELQPGYIRSRYN-LGI-SCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHCTTCHHHHHH-HHH-HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHH-HHH-HHHHCCCHHHHHHHHHHHH
Confidence 99999998876652211 111 1222345566665555554
No 81
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.99 E-value=1.6e-08 Score=88.35 Aligned_cols=157 Identities=13% Similarity=-0.002 Sum_probs=106.4
Q ss_pred HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh--hHHHHHHHHHHHHHh--hccCHHHH-HHHHHHHH
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN--RVREIQMQNYMKKKE--QKERREQD-LREGLQLY 226 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~--~l~e~q~~~y~~~ie--l~~~~~~~-~nlG~al~ 226 (334)
+....|.++...++..++++......+.. ....+.+.+.+.. +..+.+...+.+.++ ..|..... +.+|.+++
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence 33456778888888777776432211110 0122333443332 223556667777777 66666555 49999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHH
Q 019871 227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDV 306 (334)
Q Consensus 227 ~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~ 306 (334)
+.|++++|+..|+++++.+|++ ..+++++|.+|..+|++++|+..|+++++..|.+......-- ..+....++.+
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~ 227 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRLNRNQ---PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI--RLAKVFEDRDT 227 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHH--HHHHHTTCHHH
T ss_pred HcCCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH--HHHHHccCHHH
Confidence 9999999999999999999998 679999999999999999999999999999998665322111 11222345555
Q ss_pred HHHHHHHhh
Q 019871 307 LLKRFDESF 315 (334)
Q Consensus 307 lL~~~~e~~ 315 (334)
+++.+++.+
T Consensus 228 A~~~~~~~~ 236 (252)
T 2ho1_A 228 AASYGLQLK 236 (252)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 82
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.98 E-value=1.1e-09 Score=96.71 Aligned_cols=154 Identities=11% Similarity=0.056 Sum_probs=102.8
Q ss_pred hhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhh--hhHHHHHHHHHHHHHhhccCH----HHHHHHHHHHHHc
Q 019871 157 RVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVIS--NRVREIQMQNYMKKKEQKERR----EQDLREGLQLYRT 228 (334)
Q Consensus 157 R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~----~~~~nlG~al~~~ 228 (334)
+.|.++...+++..+++......+.. ....+...|.+. .+..+.++..+.+.++..++. ...+++|.++...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 45666777677777666422111110 011222333333 233456677788887732221 1246999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHH
Q 019871 229 GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLL 308 (334)
Q Consensus 229 g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL 308 (334)
|++++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|+++++++|.+...... -.. .+....+|.+++
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-l~~-~~~~~~~~~~A~ 162 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYE-LGQ-AYYYNKEYVKAD 162 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHH-HHH-HHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHH-HHH-HHHHHHHHHHHH
Confidence 99999999999999999998 5799999999999999999999999999999987763322 110 111122666666
Q ss_pred HHHHHhh
Q 019871 309 KRFDESF 315 (334)
Q Consensus 309 ~~~~e~~ 315 (334)
+.|++.+
T Consensus 163 ~~~~~a~ 169 (272)
T 3u4t_A 163 SSFVKVL 169 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666555
No 83
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.98 E-value=4.7e-09 Score=77.64 Aligned_cols=68 Identities=22% Similarity=0.310 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
..+++|..++..|+|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|+++++++|.+..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 78 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH
Confidence 34599999999999999999999999999998 689999999999999999999999999999998654
No 84
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.97 E-value=7.7e-10 Score=104.99 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
..+++|.+++++|+|++|+.+|+++|+++|++ ..+||++|.+|..+|++++|+.+|++|++++|++..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN---PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 45699999999999999999999999999998 689999999999999999999999999999998654
No 85
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.97 E-value=2.9e-09 Score=98.60 Aligned_cols=127 Identities=15% Similarity=0.083 Sum_probs=91.9
Q ss_pred hhhHHHHhhcccchhhhhchhcHHH----HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC
Q 019871 158 VGPLLMKMQKRYGKMEQTGELSEKE----IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGK 230 (334)
Q Consensus 158 ~G~V~lkLek~~~aie~~~~l~ek~----~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~ 230 (334)
+|.++..+++...+++......+.. ....+.+.|.+.... .+.++..|.+.+++.|+....+ ++|.++.+.|+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3556666666666665322111110 012334445444333 4667788999999999876655 99999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|++|+++.|+...
T Consensus 263 ~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 316 (365)
T 4eqf_A 263 SEEAVEAYTRALEIQPGF---IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316 (365)
T ss_dssp HHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCC
Confidence 999999999999999998 689999999999999999999999999999988543
No 86
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.96 E-value=8.1e-09 Score=88.30 Aligned_cols=84 Identities=11% Similarity=0.115 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
.+.++..|.+.+ ++.....+++|.++++.|+|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|++
T Consensus 22 ~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~ 96 (213)
T 1hh8_A 22 WKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKE 96 (213)
T ss_dssp HHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 344556666553 5555666799999999999999999999999999998 68999999999999999999999999
Q ss_pred HHHcCCCCH
Q 019871 278 ALLAGYEDF 286 (334)
Q Consensus 278 AIelgp~~~ 286 (334)
|+++.|.+.
T Consensus 97 al~~~~~~~ 105 (213)
T 1hh8_A 97 ALIQLRGNQ 105 (213)
T ss_dssp HHHTTTTCS
T ss_pred HHHhCCCcc
Confidence 999988754
No 87
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.96 E-value=3.6e-09 Score=102.15 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHh----------------hccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 019871 198 REIQMQNYMKKKE----------------QKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVAC 260 (334)
Q Consensus 198 ~e~q~~~y~~~ie----------------l~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ 260 (334)
.+.++..|.++++ +.|..... +++|.+++++|+|++|+.+|++|++++|++ +.+|+++|.
T Consensus 239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~ 315 (370)
T 1ihg_A 239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---TKALYRRAQ 315 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh---HHHHHHHHH
Confidence 3455566666665 45555444 499999999999999999999999999998 689999999
Q ss_pred HHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 261 CYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 261 ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
+|..+|++++|+.+|++|++++|++..
T Consensus 316 ~~~~~g~~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 316 GWQGLKEYDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999998654
No 88
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.96 E-value=1.2e-08 Score=78.15 Aligned_cols=86 Identities=21% Similarity=0.321 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
+.++..|.+.++..|..... +.+|.++++.|++++|+..|+++++.+|.+ ..+++++|.+|..+|++++|+..|++
T Consensus 26 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44556666777777765554 589999999999999999999999999987 67999999999999999999999999
Q ss_pred HHHcCCCCHH
Q 019871 278 ALLAGYEDFK 287 (334)
Q Consensus 278 AIelgp~~~~ 287 (334)
+++.+|.+..
T Consensus 103 ~~~~~~~~~~ 112 (125)
T 1na0_A 103 ALELDPNNAE 112 (125)
T ss_dssp HHHHCTTCHH
T ss_pred HHHhCCCcHH
Confidence 9999988654
No 89
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.96 E-value=5.2e-09 Score=93.97 Aligned_cols=112 Identities=13% Similarity=0.022 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
+.++..|.+.+++.|..... +.+|.++...|+|++|+..|+++++++|++ ..+++++|.+|..+|++++|+..|++
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---HLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---SHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45566777777777765444 488888888888888888888888888876 45777888888888888888888888
Q ss_pred HHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 278 ALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 278 AIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+++.+|.+...... -. ..+....+|.+++..|++.+
T Consensus 185 al~~~~~~~~~~~~-l~-~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 185 ALSIAPEDPFVMHE-VG-VVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHTTCTTCHHHHHH-HH-HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHH-HH-HHHHHcccHHHHHHHHHHHH
Confidence 88888776542211 11 11222344555555554444
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=2.7e-08 Score=76.59 Aligned_cols=126 Identities=21% Similarity=0.227 Sum_probs=94.2
Q ss_pred HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCC
Q 019871 156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQD-LREGLQLYRTGK 230 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~ 230 (334)
...|.++...++...+++......... ....+...+.+.... .+.+...+.+.++..|..... +.+|.++.+.|+
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 456778888888777776422111110 012233334333222 355567777888888876554 499999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
+++|+..|+++++..|.+ ..+++++|.+|...|++++|+..|+++++.+|.
T Consensus 85 ~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999987 679999999999999999999999999999886
No 91
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.95 E-value=7.1e-09 Score=81.01 Aligned_cols=95 Identities=17% Similarity=0.292 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhh
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDL 295 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl 295 (334)
...+.+|..+++.|+|++|+..|+++++.+|++ ..+|+++|.+|..+|++++|+.+|+++++++|.+...... -..
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-la~ 92 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR-KAA 92 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH-HHH
Confidence 344699999999999999999999999999998 6899999999999999999999999999999987653221 111
Q ss_pred HHHhcChHHHHHHHHHHHhh
Q 019871 296 ENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 296 ~~Lr~dp~F~~lL~~~~e~~ 315 (334)
.+....+|.++++.|++.+
T Consensus 93 -~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 93 -ALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp -HHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHhhHHHHHHHHHHHH
Confidence 2334467888888777766
No 92
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.95 E-value=2.5e-09 Score=101.25 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=81.8
Q ss_pred HhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------------chHHHHHHHHHHHHCCChHHHHHHH
Q 019871 209 KEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEE------------SSVASYNVACCYSKLNQVKAGLSAL 275 (334)
Q Consensus 209 iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e------------~~~a~yNlA~ay~~lG~~eeAl~~l 275 (334)
++.+|..... +++|.++++.|+|++|+.+|++|++++|++.. ...+|+|+|.||.++|++++|+.+|
T Consensus 140 ~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3334444444 59999999999999999999999999999720 0379999999999999999999999
Q ss_pred HHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 276 EDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 276 ekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
++||+++|.+...+.. ... .+....+|.+++..|++.+
T Consensus 220 ~~al~~~p~~~~a~~~-lg~-~~~~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 220 NKALELDSNNEKGLSR-RGE-AHLAVNDFELARADFQKVL 257 (336)
T ss_dssp HHHHHHCTTCHHHHHH-HHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHH-HHH-HHHHCCCHHHHHHHHHHHH
Confidence 9999999998763322 121 2344567778777777766
No 93
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.94 E-value=8.4e-09 Score=86.44 Aligned_cols=110 Identities=10% Similarity=0.104 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-HHHCCCh--HHHHHHHH
Q 019871 201 QMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC-YSKLNQV--KAGLSALE 276 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~a-y~~lG~~--eeAl~~le 276 (334)
++..+.+.++.+|..... +.+|.+++..|+|++|+.+|+++++++|++ +.+|+++|.+ |...|++ ++|+..|+
T Consensus 29 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~ 105 (177)
T 2e2e_A 29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---AELYAALATVLYYQASQHMTAQTRAMID 105 (177)
T ss_dssp CCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 445677778888877655 499999999999999999999999999998 6899999999 8899999 99999999
Q ss_pred HHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 277 DALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 277 kAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
++++++|.+...... -.. .+....+|.+++..|++.+
T Consensus 106 ~al~~~p~~~~~~~~-la~-~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 106 KALALDSNEITALML-LAS-DAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHCTTCHHHHHH-HHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHH-HHH-HHHHcccHHHHHHHHHHHH
Confidence 999999997763221 111 2333467778877777766
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=1.4e-09 Score=112.76 Aligned_cols=112 Identities=13% Similarity=0.036 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.++..|.++++++|++...+ ++|.+++++|+|++|+..|++|++++|++ +.+|+++|.+|..+|++++ +.+|+
T Consensus 449 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 449 VAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---LAPKLALAATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHH-HHHHH
Confidence 4667788999999999886665 99999999999999999999999999998 5799999999999999999 99999
Q ss_pred HHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 277 DALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 277 kAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+|++++|++...... -.. .+....+++++++.|++.+
T Consensus 525 ~al~~~P~~~~a~~~-lg~-~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 525 TVWSTNDGVISAAFG-LAR-ARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHCTTCHHHHHH-HHH-HHHHTTCHHHHHHHHHTSC
T ss_pred HHHHhCCchHHHHHH-HHH-HHHHcCCHHHHHHHHHhhc
Confidence 999999998773322 221 2344567888888888776
No 95
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.94 E-value=2.8e-09 Score=98.13 Aligned_cols=86 Identities=12% Similarity=0.073 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871 197 VREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL 275 (334)
Q Consensus 197 l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l 275 (334)
..+.++..|.+++++.|.....+ ++|.+++++|+|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~ 95 (281)
T 2c2l_A 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS---VKAHFFLGQCQLEMESYDEAIANL 95 (281)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34557788889999999876665 99999999999999999999999999998 689999999999999999999999
Q ss_pred HHHHHcCCCC
Q 019871 276 EDALLAGYED 285 (334)
Q Consensus 276 ekAIelgp~~ 285 (334)
++|++++|++
T Consensus 96 ~~al~l~p~~ 105 (281)
T 2c2l_A 96 QRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHhCccc
Confidence 9999999865
No 96
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.93 E-value=1.6e-08 Score=79.49 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=75.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC---HHHHhcChh
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED---FKRVRTDPD 294 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~---~~~i~~Dpd 294 (334)
.+++|..+++.|+|++|+..|+++++.+|+++....+++++|.||..+|++++|+.+|+++++.+|++ .... ..-.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~-~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGL-LKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH-HHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHH-HHHH
Confidence 56899999999999999999999999999985333799999999999999999999999999999987 3311 1111
Q ss_pred hHHHhcChHHHHHHHHHHHhh
Q 019871 295 LENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 295 l~~Lr~dp~F~~lL~~~~e~~ 315 (334)
. .+....++.++++.|++.+
T Consensus 84 ~-~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 84 L-SQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp H-HHHHTTCHHHHHHHHHHHH
T ss_pred H-HHHHcCCHHHHHHHHHHHH
Confidence 1 2233456777776666655
No 97
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.93 E-value=1e-08 Score=78.03 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhh
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDL 295 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl 295 (334)
...+.+|..++..|+|++|+..|+++++.+|++ ..+|+++|.+|..+|++++|+..++++++.+|.+......- .
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-a- 79 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK-A- 79 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-H-
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHH-H-
Confidence 345689999999999999999999999999998 68999999999999999999999999999999876532211 1
Q ss_pred HHHhcChHHHHHHHHHHHhh
Q 019871 296 ENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 296 ~~Lr~dp~F~~lL~~~~e~~ 315 (334)
..+....++.++++.|++.+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 12334456777777777766
No 98
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.93 E-value=6e-08 Score=87.57 Aligned_cols=130 Identities=16% Similarity=0.101 Sum_probs=96.1
Q ss_pred HHHhhhhHHHHhhcccchhhhhc---hhcH---HHHHHHhhch------------hhh--hhhHHHHHHHHHHHHHhhcc
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG---ELSE---KEIIRAERNS------------GVI--SNRVREIQMQNYMKKKEQKE 213 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~---~l~e---k~~~~a~~n~------------g~~--~~~l~e~q~~~y~~~iel~~ 213 (334)
+....|.++..++++..+++... .+.. .. ...+... +.+ ..+..+.++..+.+.++..|
T Consensus 73 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 151 (359)
T 3ieg_A 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV 151 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 34567778888888777776322 2222 21 1111111 222 22334556777888888888
Q ss_pred CHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 214 RREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 214 ~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.....+ .+|.++...|++++|+..|+++++++|++ +.+|+++|.+|..+|++++|+..|+++++.+|++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 223 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 223 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH
Confidence 776654 99999999999999999999999999998 679999999999999999999999999999998765
No 99
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.93 E-value=3.4e-08 Score=88.63 Aligned_cols=156 Identities=10% Similarity=0.028 Sum_probs=106.5
Q ss_pred HHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhh--hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC
Q 019871 155 RQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVIS--NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRTG 229 (334)
Q Consensus 155 ~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g 229 (334)
....|.++..++++..+++......... ....+...|.+. .+..+.++..+.+.++..|.....+ ++|.+++..|
T Consensus 128 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 207 (330)
T 3hym_B 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 3457777888887777776432111110 011222233332 2334566778888888888876554 9999999999
Q ss_pred CHHHHHHHHHHHHhcC---------CCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhc
Q 019871 230 KYEVAREKFESVLGSK---------PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRA 300 (334)
Q Consensus 230 ~yeeAl~~fekALeld---------P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~ 300 (334)
+|++|+..|++++++. |.+ ..+|+++|.+|..+|++++|+.+|+++++++|++......- . ..+..
T Consensus 208 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l-a-~~~~~ 282 (330)
T 3hym_B 208 EWKTAEKWFLDALEKIKAIGNEVTVDKW---EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAI-G-YIHSL 282 (330)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCSCTTTTC---CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHH-H-HHHHH
T ss_pred cHHHHHHHHHHHHHHhhhccccccccHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHH-H-HHHHH
Confidence 9999999999999886 333 46899999999999999999999999999998865522211 1 11223
Q ss_pred ChHHHHHHHHHHHhh
Q 019871 301 SEEFDVLLKRFDESF 315 (334)
Q Consensus 301 dp~F~~lL~~~~e~~ 315 (334)
..++.++++.|++.+
T Consensus 283 ~g~~~~A~~~~~~al 297 (330)
T 3hym_B 283 MGNFENAVDYFHTAL 297 (330)
T ss_dssp HTCHHHHHHHHHTTT
T ss_pred hccHHHHHHHHHHHH
Confidence 356777777777766
No 100
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.92 E-value=1.3e-08 Score=89.44 Aligned_cols=114 Identities=12% Similarity=0.094 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHhhc----cCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHH
Q 019871 197 VREIQMQNYMKKKEQK----ERREQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAG 271 (334)
Q Consensus 197 l~e~q~~~y~~~iel~----~~~~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeA 271 (334)
..+.++..|.+.++.. |.... .+.+|.+++..|+|++|+..|+++++++|++ ..+|+++|.+|..+|++++|
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHccCHHHH
Confidence 3455666777777653 23333 3599999999999999999999999999998 68999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 272 LSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 272 l~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+.+|++|++++|.+......- . ..+....+|.++++.|++.+
T Consensus 97 ~~~~~~al~~~~~~~~~~~~l-a-~~~~~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNR-G-IALYYGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHH-H-HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccHHHHHH-H-HHHHHhccHHHHHHHHHHHH
Confidence 999999999999876522211 1 12333456777777776665
No 101
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.92 E-value=3.2e-08 Score=83.81 Aligned_cols=131 Identities=11% Similarity=-0.010 Sum_probs=96.9
Q ss_pred HHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh---hHHHHHHHHHHHHHh--hccCHHHH-HHHHHHHH
Q 019871 155 RQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN---RVREIQMQNYMKKKE--QKERREQD-LREGLQLY 226 (334)
Q Consensus 155 ~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~---~l~e~q~~~y~~~ie--l~~~~~~~-~nlG~al~ 226 (334)
....|.++..+++...+++......... ....+.+.+.+.. +..+.++..+.+.++ ..|..... +++|.++.
T Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 124 (225)
T 2vq2_A 45 WLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA 124 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH
Confidence 3456777888888777776432111110 0122334444433 334556677778877 45555444 59999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC-CCHHH
Q 019871 227 RTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY-EDFKR 288 (334)
Q Consensus 227 ~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp-~~~~~ 288 (334)
+.|++++|+..|+++++.+|++ ..+++++|.+|..+|++++|+..++++++.+| .+...
T Consensus 125 ~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 184 (225)
T 2vq2_A 125 KQGQFGLAEAYLKRSLAAQPQF---PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD 184 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence 9999999999999999999998 68999999999999999999999999999999 76553
No 102
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.92 E-value=2.3e-08 Score=90.30 Aligned_cols=131 Identities=12% Similarity=0.124 Sum_probs=98.9
Q ss_pred HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhcc---CHHHHH-HH----
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKE---RREQDL-RE---- 221 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~---~~~~~~-nl---- 221 (334)
+....|.++..++++..+++......... ....+...|.+.... .+.++..|.+.+++.| .....+ .+
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (359)
T 3ieg_A 39 AYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD 118 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH
Confidence 34457788888888888877433222111 112344444444333 4566788888888888 554443 33
Q ss_pred --------HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 222 --------GLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 222 --------G~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
|..++..|++++|+..|+++++.+|++ ..+++++|.+|..+|++++|+..|+++++.+|.+..
T Consensus 119 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 189 (359)
T 3ieg_A 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD---AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 799999999999999999999999998 689999999999999999999999999999998776
No 103
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.3e-08 Score=81.11 Aligned_cols=110 Identities=23% Similarity=0.313 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhh
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDL 295 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl 295 (334)
...+.+|..++..|+|++|+..|+++++++|++.....+|+++|.+|..+|++++|+.+|+++++++|.+...... -..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~a~ 107 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR-RSQ 107 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH-HHH
Confidence 4456999999999999999999999999999852224799999999999999999999999999999987653221 111
Q ss_pred HHHhcChHHHHHHHHHHHhhh----chhHHHHHHHh
Q 019871 296 ENLRASEEFDVLLKRFDESFI----NENAINAIKSL 327 (334)
Q Consensus 296 ~~Lr~dp~F~~lL~~~~e~~~----~~~ai~~~k~~ 327 (334)
.+....+|.++++.|++.+. +..+...+..+
T Consensus 108 -~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 108 -ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp -HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred -HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 23334567888887777763 33444444444
No 104
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.91 E-value=1.8e-08 Score=90.26 Aligned_cols=114 Identities=11% Similarity=0.074 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871 197 VREIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL 275 (334)
Q Consensus 197 l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l 275 (334)
..+.+...+.+.++..|..... +.+|.++++.|++++|+..|+++++.+|++ ..+|+++|.+|...|++++|+..|
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD---AQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455667777888888876554 488999999999999999999999999987 678999999999999999999999
Q ss_pred HHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 276 EDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 276 ekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+++++.+|.+...... -. ..+....++.++++.|++.+
T Consensus 230 ~~a~~~~~~~~~~~~~-l~-~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 230 NRALDINPGYVRVMYN-MA-VSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHCTTCHHHHHH-HH-HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHH-HH-HHHHHhccHHHHHHHHHHHH
Confidence 9999998886652221 11 11233456666666666655
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.90 E-value=2.1e-08 Score=102.54 Aligned_cols=145 Identities=8% Similarity=-0.008 Sum_probs=116.5
Q ss_pred HHhhchhhhhhhH------------HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC--CHHHHHHHHHHHHhcCCCCC
Q 019871 185 RAERNSGVISNRV------------REIQMQNYMKKKEQKERREQDL-REGLQLYRTG--KYEVAREKFESVLGSKPTPE 249 (334)
Q Consensus 185 ~a~~n~g~~~~~l------------~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g--~yeeAl~~fekALeldP~~~ 249 (334)
.+|...+.+...+ .+.++..+.++++.+|+...+| ++|.++.+.+ +|++|++.|++++++||.+
T Consensus 64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N- 142 (567)
T 1dce_A 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN- 142 (567)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-
Confidence 4566677666554 3556788999999999987776 9999999999 7799999999999999999
Q ss_pred cchHHHHHHHHHHHHCC-ChHHHHHHHHHHHHcCCCCHH-HHhcChhhHHHhc-----------ChHHHHHHHHHHHhh-
Q 019871 250 ESSVASYNVACCYSKLN-QVKAGLSALEDALLAGYEDFK-RVRTDPDLENLRA-----------SEEFDVLLKRFDESF- 315 (334)
Q Consensus 250 e~~~a~yNlA~ay~~lG-~~eeAl~~lekAIelgp~~~~-~i~~Dpdl~~Lr~-----------dp~F~~lL~~~~e~~- 315 (334)
..+|++++.++..+| .+++++++++++|+.+|.|.. |...---+..+.. ...+++.++.+++.+
T Consensus 143 --~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 143 --FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp --HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 689999999999999 999999999999999999887 5444433444321 256888888888887
Q ss_pred ---hchhHHHHHHHhhcccC
Q 019871 316 ---INENAINAIKSLFGLLD 332 (334)
Q Consensus 316 ---~~~~ai~~~k~~~~~~~ 332 (334)
.++.|-.....+++.++
T Consensus 221 ~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 221 TDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp HCSSCSHHHHHHHHHHSCCC
T ss_pred hCCCCccHHHHHHHHHhcCC
Confidence 46677777777776543
No 106
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.90 E-value=3.9e-08 Score=91.09 Aligned_cols=128 Identities=11% Similarity=0.019 Sum_probs=96.0
Q ss_pred HHHhhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHHHHHHHH----HH
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQDLREGLQL----YR 227 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~nlG~al----~~ 227 (334)
+....|.++...++..++++.... .. ...++.+.+.+.. +..+.+...+.+.+++.|... ..+++.++ ..
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~l~~a~~~l~~~ 178 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ-GD--SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-LTQLATAWVSLAAG 178 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT-CC--SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC-CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-HHHHHHHHHHHHhC
Confidence 345678888888888888875332 11 1223334444443 334667788888888888753 23443332 34
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH
Q 019871 228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR 288 (334)
Q Consensus 228 ~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~ 288 (334)
.|++++|+..|+++++.+|++ +.+|+++|.||..+|++++|+..|++||+++|++...
T Consensus 179 ~~~~~eA~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKCSPT---LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp TTHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred chHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 599999999999999999998 6899999999999999999999999999999998774
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.89 E-value=1.3e-08 Score=89.63 Aligned_cols=65 Identities=9% Similarity=0.057 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
.+|..+++.|+|++|+..|+++++..|+++....+++++|.||.++|++++|++.+++++..+|.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 44555555555555555555555555554322244555555555555555555555555555554
No 108
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.89 E-value=1.4e-08 Score=78.39 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE 296 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~ 296 (334)
..+.+|..++..|+|++|+..|+++++.+|++ ..+|+++|.+|..+|++++|+..++++++++|.+......- . .
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~-~ 88 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM-G-L 88 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-H-H
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH-H-H
Confidence 34599999999999999999999999999998 68999999999999999999999999999999876532211 1 1
Q ss_pred HHhcChHHHHHHHHHHHhhh
Q 019871 297 NLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 297 ~Lr~dp~F~~lL~~~~e~~~ 316 (334)
.+....+|.++++.|++.+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 23345677888777777663
No 109
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.89 E-value=4.7e-09 Score=103.65 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=83.3
Q ss_pred HHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------------chHHHHHHHHHHHHCCChHHHHHH
Q 019871 208 KKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEE------------SSVASYNVACCYSKLNQVKAGLSA 274 (334)
Q Consensus 208 ~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e------------~~~a~yNlA~ay~~lG~~eeAl~~ 274 (334)
.++.+|..... +++|..+++.|+|++|+.+|++|++++|++.. ...+|+|+|.||.++|++++|+.+
T Consensus 260 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 33444444444 49999999999999999999999999999720 137999999999999999999999
Q ss_pred HHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 275 LEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 275 lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
|++||+++|.+...+.. ... .+....+|++++..|++.+.
T Consensus 340 ~~~al~~~p~~~~a~~~-~g~-a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 340 CDKALGLDSANEKGLYR-RGE-AQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHHHHSTTCHHHHHH-HHH-HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCccHHHHHH-HHH-HHHHccCHHHHHHHHHHHHH
Confidence 99999999998763322 122 23345678888888887763
No 110
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.88 E-value=2.9e-08 Score=85.20 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=75.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-------------hHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEES-------------SVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~-------------~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
.+++|..++..|+|++|+..|++++++.|++++. ..+|+++|.||..+|++++|+.+|++|++++|.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 4589999999999999999999999999987310 179999999999999999999999999999998
Q ss_pred CHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 285 DFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 285 ~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+...+..- .. .+....+|.++++.|++.+
T Consensus 121 ~~~~~~~l-g~-~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 121 NVKALYKL-GV-ANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp CHHHHHHH-HH-HHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHH-HH-HHHHcccHHHHHHHHHHHH
Confidence 77632221 11 1223346777777777665
No 111
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.88 E-value=6.4e-08 Score=91.50 Aligned_cols=159 Identities=14% Similarity=0.199 Sum_probs=109.5
Q ss_pred HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHH------------
Q 019871 156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQDL------------ 219 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~------------ 219 (334)
...|.++..+++...+++......+.. ....+.+.+.+.. +..+.++..|.+.+++.|+....+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 446777888888888777433222211 1223334443333 334666778888888888765543
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHH
Q 019871 220 -REGLQLYRTGKYEVAREKFESVLGSKPTPEES-SVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLEN 297 (334)
Q Consensus 220 -nlG~al~~~g~yeeAl~~fekALeldP~~~e~-~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~ 297 (334)
.+|.++++.|++++|+..|+++++++|+++.. ..+|+++|.+|..+|++++|+..|+++++++|++...... -. ..
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-l~-~~ 338 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD-RA-EA 338 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH-HH-HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH-HH-HH
Confidence 33899999999999999999999999986310 2378999999999999999999999999999987653222 11 12
Q ss_pred HhcChHHHHHHHHHHHhhh
Q 019871 298 LRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 298 Lr~dp~F~~lL~~~~e~~~ 316 (334)
+....+|.+++..|++.+.
T Consensus 339 ~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 3445678888888877763
No 112
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.87 E-value=1e-08 Score=79.43 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHHHHCCChHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEES----SVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~----~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
+.++..|.+.++..|..... +++|.+++..|+|++|+..|+++++++|++... ..+|+++|.+|..+|++++|+.
T Consensus 21 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 100 (131)
T 1elr_A 21 DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIH 100 (131)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 44556677777777776554 499999999999999999999999998865221 4689999999999999999999
Q ss_pred HHHHHHHcCCC
Q 019871 274 ALEDALLAGYE 284 (334)
Q Consensus 274 ~lekAIelgp~ 284 (334)
+|+++++++|+
T Consensus 101 ~~~~~~~~~~~ 111 (131)
T 1elr_A 101 FYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHhCCC
Confidence 99999999874
No 113
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.87 E-value=3e-08 Score=93.76 Aligned_cols=131 Identities=16% Similarity=0.102 Sum_probs=96.9
Q ss_pred HHHhhhhHHHHhhcccchhhhhchh---cHHHH--HHH------------hhchhhhh--hhHHHHHHHHHHHHHhhccC
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGEL---SEKEI--IRA------------ERNSGVIS--NRVREIQMQNYMKKKEQKER 214 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l---~ek~~--~~a------------~~n~g~~~--~~l~e~q~~~y~~~iel~~~ 214 (334)
+....|.++..+++...+++..... ..... ... ....+... .+..+.++..|.+.+++.|.
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 175 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW 175 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3456777888888887777632211 11100 011 11112222 22245567788888888887
Q ss_pred HHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 215 REQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 215 ~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.... +.+|.++.+.|++++|+..|+++++.+|++ ..+|+++|.+|..+|++++|+..|+++++++|++..
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 246 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLKNDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 246 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH
Confidence 7665 499999999999999999999999999998 689999999999999999999999999999998765
No 114
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.87 E-value=2e-08 Score=97.04 Aligned_cols=156 Identities=12% Similarity=0.060 Sum_probs=108.6
Q ss_pred HHhhhhHHHHhhcccchhhhhchhcHHH-HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC
Q 019871 155 RQRVGPLLMKMQKRYGKMEQTGELSEKE-IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGK 230 (334)
Q Consensus 155 ~~R~G~V~lkLek~~~aie~~~~l~ek~-~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~ 230 (334)
....|.++...++...+++......... ....+...|.+.... .+.+...|.+.++..|.....+ .+|.++...|+
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Confidence 4556677777777777766322111110 012233344333222 3566788888888888876654 99999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHH
Q 019871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKR 310 (334)
Q Consensus 231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~ 310 (334)
|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+..|+++++.+|.+......- . ..+....++.++++.
T Consensus 326 ~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-~-~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF-A-EILTDRGDFDTAIKQ 400 (537)
T ss_dssp HHHHHHHHHHHHHHCTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH-H-HHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH-H-HHHHHhCCHHHHHHH
Confidence 999999999999999998 47999999999999999999999999999999876522111 1 122334566666666
Q ss_pred HHHhh
Q 019871 311 FDESF 315 (334)
Q Consensus 311 ~~e~~ 315 (334)
|++.+
T Consensus 401 ~~~a~ 405 (537)
T 3fp2_A 401 YDIAK 405 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.86 E-value=2.4e-08 Score=81.11 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE 296 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~ 296 (334)
..+.+|..++..|+|++|+..|+++++++|++ ..+|+++|.+|..+|++++|+.+|+++++++|.+...... -..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~a~- 89 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR-RAA- 89 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH-
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH-HHH-
Confidence 45699999999999999999999999999998 6899999999999999999999999999999987653221 111
Q ss_pred HHhcChHHHHHHHHHHHhh
Q 019871 297 NLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 297 ~Lr~dp~F~~lL~~~~e~~ 315 (334)
.+....+|.++++.|++.+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVV 108 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHH
Confidence 2333456777777666665
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=2.4e-08 Score=87.98 Aligned_cols=89 Identities=10% Similarity=0.071 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH---------
Q 019871 198 REIQMQNYMKKKEQKERR----EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK--------- 264 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~----~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~--------- 264 (334)
.+.++..|.+.++..|.. ...+++|.+++++|+|++|+..|+++++.+|+++....++|++|.+|..
T Consensus 20 ~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~ 99 (225)
T 2yhc_A 20 WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGF 99 (225)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhh
Confidence 355667777777777764 3456999999999999999999999999999986545689999999986
Q ss_pred ---------CCChHHHHHHHHHHHHcCCCCH
Q 019871 265 ---------LNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 265 ---------lG~~eeAl~~lekAIelgp~~~ 286 (334)
+|++++|+..|+++|+..|+..
T Consensus 100 ~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 100 FGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp --------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred hccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 6799999999999999999865
No 117
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.86 E-value=1.1e-08 Score=94.17 Aligned_cols=96 Identities=20% Similarity=0.228 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhh
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDL 295 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl 295 (334)
...+.+|..+++.|+|++|+..|+++++++|++ +.+|+++|.+|..+|++++|+.+|++|++++|++...... -..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~ 80 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF-LGQ 80 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH-HHH
Confidence 445699999999999999999999999999998 6899999999999999999999999999999998763322 122
Q ss_pred HHHhcChHHHHHHHHHHHhhh
Q 019871 296 ENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 296 ~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
.+....+|.+++..|++.+.
T Consensus 81 -~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 -CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp -HHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHcCCHHHHHHHHHHHHH
Confidence 23445678888888877664
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=1.4e-08 Score=101.58 Aligned_cols=130 Identities=10% Similarity=0.014 Sum_probs=103.8
Q ss_pred HHHhhhhHHHHhhcccchhhhhc---hhcHHHHHHHhhchhhhhhh--HHHHHHHHHHHHHhhccCHHHHH-HHHHHHHH
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG---ELSEKEIIRAERNSGVISNR--VREIQMQNYMKKKEQKERREQDL-REGLQLYR 227 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~---~l~ek~~~~a~~n~g~~~~~--l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~ 227 (334)
+....|.++...+++.++++... ++.... ..++.+.|.++.. ..+.++..|.++++++|+....+ ++|.++.+
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 103 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGH-PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED 103 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 44567888888888888887432 222111 2344555555433 34667889999999999876654 99999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC---CChHHHHHHHHHHHHcCCCCHH
Q 019871 228 TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL---NQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 228 ~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l---G~~eeAl~~lekAIelgp~~~~ 287 (334)
+|++++|++.|+++++++|++ ..+++++|.+|..+ |++++|++.|+++++.+|.+..
T Consensus 104 ~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 104 AGQAEAAAAAYTRAHQLLPEE---PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred cCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence 999999999999999999998 68999999999999 9999999999999999998643
No 119
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.85 E-value=2.5e-08 Score=91.56 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871 197 VREIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL 275 (334)
Q Consensus 197 l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l 275 (334)
..+.++..|.+.+++.|.....+ .+|.++++.|++++|+..|+++++++|++ ..+|+++|.+|..+|++++|+..|
T Consensus 79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN---QTALMALAVSFTNESLQRQACEIL 155 (368)
T ss_dssp CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34667788889999999876654 99999999999999999999999999998 689999999999999999999999
Q ss_pred HHHHHcCCCCHH
Q 019871 276 EDALLAGYEDFK 287 (334)
Q Consensus 276 ekAIelgp~~~~ 287 (334)
+++++++|.+..
T Consensus 156 ~~~~~~~~~~~~ 167 (368)
T 1fch_A 156 RDWLRYTPAYAH 167 (368)
T ss_dssp HHHHHTSTTTGG
T ss_pred HHHHHhCcCcHH
Confidence 999999998654
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.85 E-value=2e-08 Score=84.96 Aligned_cols=76 Identities=16% Similarity=0.055 Sum_probs=37.7
Q ss_pred HHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871 203 QNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (334)
Q Consensus 203 ~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI 279 (334)
..+.+.++++|++... +++|.++.+.|++++|+..|+++++++|++.+ ..+++++|.+|..+|+.++|+.+|+++|
T Consensus 95 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 95 KRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD-GEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT-THHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh-HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 4444445555544332 25555555555555555555555555554321 2345555555555555555555555554
No 121
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.83 E-value=3.9e-09 Score=97.24 Aligned_cols=126 Identities=8% Similarity=-0.036 Sum_probs=90.8
Q ss_pred hhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCH
Q 019871 157 RVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKY 231 (334)
Q Consensus 157 R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~y 231 (334)
..|..++..++..++++........+ ...++.+.+.+.... .+.+...+.+.+++.|+..... ..+..+.+.+++
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhccc
Confidence 45566667667777666322111111 123344455444333 3556667777777778654443 777778888999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 232 eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
++|+..|+++++.+|++ ..+++++|.+|...|++++|+..|+++++.+|++
T Consensus 202 ~~a~~~l~~al~~~P~~---~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 202 TPEIQQLQQQVAENPED---AALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp CHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred CccHHHHHHHHhcCCcc---HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 99999999999999998 6899999999999999999999999999999985
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=3.2e-08 Score=83.68 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=89.4
Q ss_pred hhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHH-HHHcCC
Q 019871 157 RVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQ-LYRTGK 230 (334)
Q Consensus 157 R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~a-l~~~g~ 230 (334)
..|.+++..+++.+++.......+.+ ...++.+.|.+.... .+.++..+.+.+++.| +.... .++.. +.+.++
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcc
Confidence 45667777778888777433222222 134455666555433 3556677777777888 54443 33433 334445
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
..+|+..|+++++++|++ ..+++++|.+|..+|++++|+..|+++++.+|..
T Consensus 90 ~~~a~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 90 ESPELKRLEQELAANPDN---FELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp SCHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred cchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 567899999999999998 6899999999999999999999999999999874
No 123
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.81 E-value=2.5e-08 Score=77.25 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC-------HHHH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED-------FKRV 289 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~-------~~~i 289 (334)
..+.+|..++..|+|++|+..|+++++.+|++ ..+++++|.+|..+|++++|+.+|+++++++|.+ ...
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~- 81 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA- 81 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH-
Confidence 35689999999999999999999999999998 6899999999999999999999999999998764 221
Q ss_pred hcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 290 RTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 290 ~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
...-.. .+....+|..+++.|++.+.
T Consensus 82 ~~~la~-~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 82 YARIGN-SYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHhccHHHHHHHHHHHHH
Confidence 111111 12344567777777776663
No 124
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.80 E-value=4.1e-08 Score=93.85 Aligned_cols=176 Identities=9% Similarity=0.002 Sum_probs=102.3
Q ss_pred HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh---------------------hHHHHHHHHHHHHHhhc
Q 019871 156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN---------------------RVREIQMQNYMKKKEQK 212 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~---------------------~l~e~q~~~y~~~iel~ 212 (334)
...|.++...++...+++......+.. ...++.+.|.++. ...+.++..|.++++++
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 330 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN 330 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Confidence 457788888888888776432111110 0122333333221 11344556777788888
Q ss_pred cCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-HHHCCChHHHHHHHHHHHHcCCCCHHHHh
Q 019871 213 ERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACC-YSKLNQVKAGLSALEDALLAGYEDFKRVR 290 (334)
Q Consensus 213 ~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~a-y~~lG~~eeAl~~lekAIelgp~~~~~i~ 290 (334)
|..... +++|.++...|+|++|+.+|+++|+++|++......++++|.. +..+|++++|+.+|++||+++|.+..+..
T Consensus 331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~ 410 (472)
T 4g1t_A 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK 410 (472)
T ss_dssp TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 876554 4999999999999999999999999998864333456777754 56789999999999999999998765321
Q ss_pred cChhhHH-----HhcCh----HHHHHHHHHHHhhhchhHHHHHHHhhccc
Q 019871 291 TDPDLEN-----LRASE----EFDVLLKRFDESFINENAINAIKSLFGLL 331 (334)
Q Consensus 291 ~Dpdl~~-----Lr~dp----~F~~lL~~~~e~~~~~~ai~~~k~~~~~~ 331 (334)
.-..+.. +..+| -+..+-..|...-..++||+.+++....|
T Consensus 411 ~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 411 MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1111111 11111 23333344555566777777777665543
No 125
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.78 E-value=3.7e-08 Score=85.96 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=93.7
Q ss_pred HHHhhhhHHHHhhcccchhhhhc-hhcH---------HHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhc--------c
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG-ELSE---------KEIIRAERNSGVISNRV--REIQMQNYMKKKEQK--------E 213 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~-~l~e---------k~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~--------~ 213 (334)
+...+|.++..++++..+++... .+.. ......+.+.|.+.... .+.++..|.+++++. |
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 45678889999998888887432 1111 11124455555555433 456667777777762 3
Q ss_pred CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 214 RREQD-LREGLQLYRTGKYEVAREKFESVLGS--------KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 214 ~~~~~-~nlG~al~~~g~yeeAl~~fekALel--------dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
..... .++|.+++..|+|++|+..|++++++ +|.. ..+++++|.+|..+|++++|+..|++++++.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV---AKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 33333 49999999999999999999999998 5554 6899999999999999999999999999873
No 126
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=3.7e-08 Score=91.06 Aligned_cols=172 Identities=11% Similarity=-0.014 Sum_probs=114.9
Q ss_pred HHHhhhhHHHHhhcccchhhhhc-hhcHH-------HHHHHhhchhhhhhh-HHHHHHHHHHHHHhhccCH-------HH
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG-ELSEK-------EIIRAERNSGVISNR-VREIQMQNYMKKKEQKERR-------EQ 217 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~-~l~ek-------~~~~a~~n~g~~~~~-l~e~q~~~y~~~iel~~~~-------~~ 217 (334)
+....|.++..++++..+++... .+... .....+.+.|.++.. ..+.++..|.+++++.+.. ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 45678889999999999987432 22110 112344555554433 2356778899988876542 22
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH--HHhcC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK--RVRTD 292 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~--~i~~D 292 (334)
..++|.++.++|+|++|+..|++++++.|++.. ...+++++|.||..+|++++|+.+|++++ ++|.... ....-
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l 236 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAAL 236 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHH
Confidence 349999999999999999999999998776532 13488999999999999999999999999 9986432 10000
Q ss_pred hhhH-HH--hcChHHHHHHHHHHHhhhchhHHHHHHHh
Q 019871 293 PDLE-NL--RASEEFDVLLKRFDESFINENAINAIKSL 327 (334)
Q Consensus 293 pdl~-~L--r~dp~F~~lL~~~~e~~~~~~ai~~~k~~ 327 (334)
..+. .+ .....|.. +..|+.....+.++..+-.-
T Consensus 237 ~~l~~~~~~~d~~~~~~-~~~~~~~~~ld~~~~~~~~~ 273 (307)
T 2ifu_A 237 EDLLQAYDEQDEEQLLR-VCRSPLVTYMDNDYAKLAIS 273 (307)
T ss_dssp HHHHHHHHTTCHHHHHH-HTTSHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHH-HHhCchhhhhhHHHHHHHHh
Confidence 0010 11 12245677 44477766677777655533
No 127
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.77 E-value=1.1e-07 Score=93.52 Aligned_cols=112 Identities=6% Similarity=-0.032 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
+.+...|.+.+++.|.+... ..+|..+.+.|++++|++.|+++++.+|++ ..+|+++|.+|...|++++|++.|++
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT---HLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC---SHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44556666666677765544 377778888888888888888888777776 46778888888888888888888888
Q ss_pred HHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 278 ALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 278 AIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+++++|.+......- ...+....+++++++.|++.+
T Consensus 467 ~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 467 SYALFQYDPLLLNEL--GVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHCCCCHHHHHHH--HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHH--HHHHHHhCCHHHHHHHHHHHH
Confidence 888777765422111 112233456666666666654
No 128
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.77 E-value=1.1e-08 Score=98.78 Aligned_cols=126 Identities=10% Similarity=0.015 Sum_probs=94.4
Q ss_pred hhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhhh--HHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCH
Q 019871 157 RVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNR--VREIQMQNYMKKKEQKERREQD-LREGLQLYRTGKY 231 (334)
Q Consensus 157 R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~--l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~y 231 (334)
..|.++...++...+++......+.. ....+.+.|.+... ..+.++..|.+.+++.|..... +.+|.+++..|++
T Consensus 281 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 360 (537)
T 3fp2_A 281 FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF 360 (537)
T ss_dssp HHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 45556666666666665322111110 01234444444433 3466778888999999886554 5999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 232 eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
++|+..|+++++.+|++ +.+|+++|.+|..+|++++|+..|+++++++|.+
T Consensus 361 ~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 361 TESEAFFNETKLKFPTL---PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999998 5799999999999999999999999999998764
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.76 E-value=1.1e-07 Score=72.69 Aligned_cols=94 Identities=17% Similarity=0.271 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLE 296 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~ 296 (334)
..+.+|..++..|++++|+..|+++++.+|++ ..+++++|.+|...|++++|+..|+++++.+|.+...... -. .
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-la-~ 85 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN-LG-N 85 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HH-H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH-HH-H
Confidence 34589999999999999999999999999987 6799999999999999999999999999999987652211 11 1
Q ss_pred HHhcChHHHHHHHHHHHhh
Q 019871 297 NLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 297 ~Lr~dp~F~~lL~~~~e~~ 315 (334)
.+....+|.+++..|++.+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 2333456777777776665
No 130
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.9e-07 Score=89.28 Aligned_cols=87 Identities=17% Similarity=0.045 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871 196 RVREIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL 275 (334)
Q Consensus 196 ~l~e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l 275 (334)
+..+.++..|.+.++..|+....+++|.++++.|+|++|+..|+++++++|++ ..+|+.+|.+|..+|++++|+..|
T Consensus 20 g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY---SKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH---HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33456778888888888876666799999999999999999999999999998 679999999999999999999999
Q ss_pred HHHHHcCCCC
Q 019871 276 EDALLAGYED 285 (334)
Q Consensus 276 ekAIelgp~~ 285 (334)
+++++.+|.+
T Consensus 97 ~~~~~~~~~~ 106 (514)
T 2gw1_A 97 SVLSLNGDFN 106 (514)
T ss_dssp HHHHHSSSCC
T ss_pred HHHHhcCCCc
Confidence 9999998843
No 131
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.74 E-value=9.4e-08 Score=93.97 Aligned_cols=159 Identities=12% Similarity=0.015 Sum_probs=117.6
Q ss_pred HHHhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhh--hhHHHHHHHHHHHHHhhccCHHHHH-HHHHHHHHc
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVIS--NRVREIQMQNYMKKKEQKERREQDL-REGLQLYRT 228 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~--~~l~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~ 228 (334)
+...++.++.+.++..++++......+.. ....+.+.+... .+..+.+...|.+.+++.|.+...+ .+|..+.+.
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 55678899999999999887433222110 012233344333 3334667788888888888876655 999999999
Q ss_pred CCHHHHHHHHHHHHhc------CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcCh
Q 019871 229 GKYEVAREKFESVLGS------KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASE 302 (334)
Q Consensus 229 g~yeeAl~~fekALel------dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp 302 (334)
|++++|++.|++++++ +|++ ...+|+++|.+|.+.|++++|++.|+++++++|++......- ...+....
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g 564 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKP--WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI--ALVYLHKK 564 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGG--GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH--HHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhhhccccchhh--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH--HHHHHHhC
Confidence 9999999999999998 4442 157999999999999999999999999999999877632221 12345567
Q ss_pred HHHHHHHHHHHhhh
Q 019871 303 EFDVLLKRFDESFI 316 (334)
Q Consensus 303 ~F~~lL~~~~e~~~ 316 (334)
+++++++.|++.+.
T Consensus 565 ~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 565 IPGLAITHLHESLA 578 (597)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 89999999988873
No 132
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.72 E-value=1.1e-07 Score=89.56 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=95.1
Q ss_pred HHHHhhhhHHHHhhcccchhhhhc-hhcH-------H-HHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCH------
Q 019871 153 TIRQRVGPLLMKMQKRYGKMEQTG-ELSE-------K-EIIRAERNSGVISNRV--REIQMQNYMKKKEQKERR------ 215 (334)
Q Consensus 153 ai~~R~G~V~lkLek~~~aie~~~-~l~e-------k-~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~------ 215 (334)
.+...+|.++..++++..+++... ++.. . .....+.+.|.+...+ .+.++..|.+++++.+..
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 355788999999999888887422 2211 1 1123455556555433 466777888888764432
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C-CCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871 216 -EQDLREGLQLYRTGKYEVAREKFESVLGS-----K-PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 216 -~~~~nlG~al~~~g~yeeAl~~fekALel-----d-P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp 283 (334)
....++|.++..+|+|++|+.+|++++++ + |.. +.+++++|.+|..+|++++|+.++++|+++.+
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL---PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 13459999999999999999999999994 5 554 68999999999999999999999999999843
No 133
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.72 E-value=1.4e-07 Score=84.48 Aligned_cols=87 Identities=15% Similarity=0.065 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
.+.+...+.+.++..|.....+ .+|.+++..|++++|+..|+++++++|++ ..+|+++|.+|..+|++++|+..|+
T Consensus 37 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~ 113 (327)
T 3cv0_A 37 LAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---IAVHAALAVSHTNEHNANAALASLR 113 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445667777788888776554 99999999999999999999999999998 6899999999999999999999999
Q ss_pred HHHHcCCCCHH
Q 019871 277 DALLAGYEDFK 287 (334)
Q Consensus 277 kAIelgp~~~~ 287 (334)
++++.+|.+..
T Consensus 114 ~~~~~~~~~~~ 124 (327)
T 3cv0_A 114 AWLLSQPQYEQ 124 (327)
T ss_dssp HHHHTSTTTTT
T ss_pred HHHHhCCccHH
Confidence 99999998654
No 134
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.71 E-value=1.7e-07 Score=83.61 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHHHH
Q 019871 201 QMQNYMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGL 272 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~~nlG~al~~----~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~eeAl 272 (334)
++..|.++++.. .....+++|.++.. .+++++|+..|+++++.++ ..+++++|.+|.. .+++++|+
T Consensus 97 A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~~~~~~~~~~A~ 170 (273)
T 1ouv_A 97 ALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND-----GDGCTILGSLYDAGRGTPKDLKKAL 170 (273)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 334444444432 22333355555555 5555555555555555432 2355555555555 55555555
Q ss_pred HHHHHHHHcC
Q 019871 273 SALEDALLAG 282 (334)
Q Consensus 273 ~~lekAIelg 282 (334)
.+|++|++.+
T Consensus 171 ~~~~~a~~~~ 180 (273)
T 1ouv_A 171 ASYDKACDLK 180 (273)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 5555555553
No 135
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.70 E-value=2e-07 Score=88.66 Aligned_cols=139 Identities=11% Similarity=-0.034 Sum_probs=106.8
Q ss_pred HHhhchhhhhhh----HHHHHHHHHHHHHhhccCHHHHH-HHHHHH----HHc---CCHHHHHHHHHHHHhcCCCCCcch
Q 019871 185 RAERNSGVISNR----VREIQMQNYMKKKEQKERREQDL-REGLQL----YRT---GKYEVAREKFESVLGSKPTPEESS 252 (334)
Q Consensus 185 ~a~~n~g~~~~~----l~e~q~~~y~~~iel~~~~~~~~-nlG~al----~~~---g~yeeAl~~fekALeldP~~~e~~ 252 (334)
.+|...+.+... ..+.++..+...+..+|+....+ +++.++ ... +++++++..++++++.+|.+ .
T Consensus 68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn---y 144 (306)
T 3dra_A 68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN---H 144 (306)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC---H
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC---H
Confidence 356666665543 33667788888999999987765 888888 777 89999999999999999998 7
Q ss_pred HHHHHHHHHHHHCCChH--HHHHHHHHHHHcCCCCHH-HHhcChhhHHHhcChH------HHHHHHHHHHhh----hchh
Q 019871 253 VASYNVACCYSKLNQVK--AGLSALEDALLAGYEDFK-RVRTDPDLENLRASEE------FDVLLKRFDESF----INEN 319 (334)
Q Consensus 253 ~a~yNlA~ay~~lG~~e--eAl~~lekAIelgp~~~~-~i~~Dpdl~~Lr~dp~------F~~lL~~~~e~~----~~~~ 319 (334)
.+|++++.++..+|.++ ++++.++++|+.+|.|+. |..+- +. +...++ +++.|+.+++.+ .|+.
T Consensus 145 ~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~--~l-l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S 221 (306)
T 3dra_A 145 HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRF--FL-LFSKKHLATDNTIDEELNYVKDKIVKCPQNPS 221 (306)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHH--HH-HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHH--HH-HHhccccchhhhHHHHHHHHHHHHHhCCCCcc
Confidence 89999999999999998 999999999999999887 33221 11 223333 777777776666 5667
Q ss_pred HHHHHHHhhc
Q 019871 320 AINAIKSLFG 329 (334)
Q Consensus 320 ai~~~k~~~~ 329 (334)
|-+....++.
T Consensus 222 aW~y~~~ll~ 231 (306)
T 3dra_A 222 TWNYLLGIHE 231 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666665
No 136
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.68 E-value=1.6e-07 Score=83.40 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=90.9
Q ss_pred HHHhhhhHHHHhhcccchhhhhc-hhcH---------HHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhc--------c
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG-ELSE---------KEIIRAERNSGVISNRV--REIQMQNYMKKKEQK--------E 213 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~-~l~e---------k~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~--------~ 213 (334)
+...+|.++..++++..+++... .+.. ......+.+.|.+.... .+.+...+.+.+++. +
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 44567888888888888877422 1111 11123344455444333 355667777777663 2
Q ss_pred CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871 214 RREQ-DLREGLQLYRTGKYEVAREKFESVLGS--------KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 214 ~~~~-~~nlG~al~~~g~yeeAl~~fekALel--------dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp 283 (334)
.... ..++|.+++..|++++|+..|++++++ +|.. ..+++++|.+|..+|++++|+..|++++++.+
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV---AKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2223 349999999999999999999999998 4444 67899999999999999999999999998643
No 137
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.68 E-value=8.3e-08 Score=92.58 Aligned_cols=95 Identities=17% Similarity=0.263 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLG----------------SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALe----------------ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe 280 (334)
...++|..+++.|+|++|+..|++|++ ++|.+ ..+|+|+|.||.++|++++|+.+|++||+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA---LSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH---HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 356999999999999999999999999 67766 68999999999999999999999999999
Q ss_pred cCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 281 AGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 281 lgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
++|++...+.. -.. .+....+|+++++.|++.+.
T Consensus 302 ~~p~~~~a~~~-lg~-~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 302 IDPSNTKALYR-RAQ-GWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TCTTCHHHHHH-HHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred hCchhHHHHHH-HHH-HHHHccCHHHHHHHHHHHHH
Confidence 99998763322 121 23445678899988888773
No 138
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.67 E-value=1.8e-07 Score=83.41 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHH
Q 019871 199 EIQMQNYMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKA 270 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~nlG~al~~----~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~ee 270 (334)
+.++..|.+++++. .....+++|.++.. .+++++|+..|+++++.++ +.+++++|.+|.. .+++++
T Consensus 131 ~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 131 KKAVEYFTKACDLN-DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD-----SPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHcCCCCCccHHH
Confidence 34445555555443 23334466666665 6666666666666665532 3456666666666 666666
Q ss_pred HHHHHHHHHHcCC
Q 019871 271 GLSALEDALLAGY 283 (334)
Q Consensus 271 Al~~lekAIelgp 283 (334)
|+.+|++|++.++
T Consensus 205 A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 205 ALARYSKACELEN 217 (273)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCC
Confidence 6666666666654
No 139
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.67 E-value=1e-07 Score=91.13 Aligned_cols=157 Identities=10% Similarity=0.000 Sum_probs=90.2
Q ss_pred HhhhhHHHHhhcccchhhhhchh---cHHHHHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcC
Q 019871 156 QRVGPLLMKMQKRYGKMEQTGEL---SEKEIIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQD-LREGLQLYRTG 229 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~~~~l---~ek~~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g 229 (334)
...|.++..+++...+++..... .... ...+.+.+.+.. +..+.++..+.+.++..|..... +++|.++++.|
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAKELDPEN-IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN 386 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSSC-SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Confidence 34566666666666665532211 1100 112222332222 22344556666777776665444 47788888888
Q ss_pred CHHHHHHHHHHHHhcCCCCCcc---hHHHHHHHHHHHH---CCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChH
Q 019871 230 KYEVAREKFESVLGSKPTPEES---SVASYNVACCYSK---LNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEE 303 (334)
Q Consensus 230 ~yeeAl~~fekALeldP~~~e~---~~a~yNlA~ay~~---lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~ 303 (334)
++++|+..|+++++++|+++.. ..+|+++|.+|.. +|++++|+..|+++++++|++......- . ..+....+
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l-a-~~~~~~g~ 464 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL-A-QMKLQQED 464 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH-H-HHHHHTTC
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH-H-HHHHHhcC
Confidence 8888888888888777776310 1277888888888 7888888888888888877765422111 1 11233345
Q ss_pred HHHHHHHHHHhh
Q 019871 304 FDVLLKRFDESF 315 (334)
Q Consensus 304 F~~lL~~~~e~~ 315 (334)
+.++++.|++.+
T Consensus 465 ~~~A~~~~~~a~ 476 (514)
T 2gw1_A 465 IDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655554
No 140
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.67 E-value=1.4e-08 Score=80.36 Aligned_cols=85 Identities=8% Similarity=0.007 Sum_probs=64.6
Q ss_pred HcCCHHHHHHHHHHHHhc---CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChH
Q 019871 227 RTGKYEVAREKFESVLGS---KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEE 303 (334)
Q Consensus 227 ~~g~yeeAl~~fekALel---dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~ 303 (334)
.+|+|++|+..|++++++ +|++ ..+|+++|.+|..+|++++|+.+|++|++++|++...... -.. .+....+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~-~~~~~g~ 76 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDL---AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF-YAM-VLYNLGR 76 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH-HHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH-HHH-HHHHcCC
Confidence 479999999999999999 4665 7899999999999999999999999999999998663222 222 2334467
Q ss_pred HHHHHHHHHHhhh
Q 019871 304 FDVLLKRFDESFI 316 (334)
Q Consensus 304 F~~lL~~~~e~~~ 316 (334)
|.++++.|++.+.
T Consensus 77 ~~~A~~~~~~al~ 89 (117)
T 3k9i_A 77 YEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777663
No 141
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.67 E-value=2e-07 Score=85.81 Aligned_cols=86 Identities=9% Similarity=0.020 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHh-hccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 199 EIQMQNYMKKKE-QKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 199 e~q~~~y~~~ie-l~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
+.+...|.++++ +.|+.... +++|..+.+.|++++|+..|+++++++|+++ ..+|+++|.++..+|++++|+..|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT--HHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc--cHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 344555666665 45555433 3666666666666666666666666666552 1256666666666666666666666
Q ss_pred HHHHcCCCCH
Q 019871 277 DALLAGYEDF 286 (334)
Q Consensus 277 kAIelgp~~~ 286 (334)
+|++.+|...
T Consensus 159 ~a~~~~p~~~ 168 (308)
T 2ond_A 159 KAREDARTRH 168 (308)
T ss_dssp HHHTSTTCCT
T ss_pred HHHhcCCCCH
Confidence 6666655543
No 142
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.66 E-value=1.5e-07 Score=86.54 Aligned_cols=125 Identities=13% Similarity=0.050 Sum_probs=91.3
Q ss_pred HhhhhHHHHhhcccchhhhhchhcHHH--HHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCC
Q 019871 156 QRVGPLLMKMQKRYGKMEQTGELSEKE--IIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQD-LREGLQLYRTGK 230 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~ 230 (334)
...|.+++..++..++++......... ........+.... +..+.++..|.++++++|++.+. +++|.++.+.|+
T Consensus 155 ~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~ 234 (287)
T 3qou_A 155 LLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR 234 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc
Confidence 346778888888888876433222111 0011111121111 11233567889999999998666 599999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
+++|+..|+++++.+|++.+ ..++.+++.+|..+|+.++|+..|+++|..
T Consensus 235 ~~~A~~~l~~~l~~~p~~~~-~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 235 NEEALELLFGHLRXDLTAAD-GQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHHHHHCTTGGG-GHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccc-chHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 99999999999999999743 579999999999999999999999999863
No 143
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.65 E-value=3.8e-08 Score=85.67 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=69.1
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCCh----------HHHHHHHHHHHHcCCCCHHHHhc-Ch
Q 019871 225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQV----------KAGLSALEDALLAGYEDFKRVRT-DP 293 (334)
Q Consensus 225 l~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~----------eeAl~~lekAIelgp~~~~~i~~-Dp 293 (334)
.-+.++|++|++.|+++++++|++ +.+|+|+|.++..++++ ++|+..|++||+++|++...+.. .-
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~---aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLD---ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 346788999999999999999999 68999999999999875 59999999999999998762221 11
Q ss_pred hhHHHh--------cChHHHHHHHHHHHhh
Q 019871 294 DLENLR--------ASEEFDVLLKRFDESF 315 (334)
Q Consensus 294 dl~~Lr--------~dp~F~~lL~~~~e~~ 315 (334)
.+..+- ...+|+++++.|++.+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl 118 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAV 118 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHH
Confidence 111110 0147899999998888
No 144
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.63 E-value=2.3e-07 Score=87.25 Aligned_cols=157 Identities=9% Similarity=-0.028 Sum_probs=105.6
Q ss_pred hhhHHHHhhcccchhhhhc-hhc--H----HH-HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCH-------H-HHH
Q 019871 158 VGPLLMKMQKRYGKMEQTG-ELS--E----KE-IIRAERNSGVISNRV--REIQMQNYMKKKEQKERR-------E-QDL 219 (334)
Q Consensus 158 ~G~V~lkLek~~~aie~~~-~l~--e----k~-~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~-------~-~~~ 219 (334)
.|.++...+++..+++... .+. + .. ....+.+.|.+...+ .+.++..+.+++++.++. . ...
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 7778888888888877322 211 1 11 124455556555433 466777888888764432 2 234
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHc-----C-CCCHHHHh
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLA-----G-YEDFKRVR 290 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIel-----g-p~~~~~i~ 290 (334)
++|.++..+|+|++|+..|++|+++.|...+ .+.+++|+|.+|..+|++++|+.+|++|+++ + |.. ..+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL-PQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH-HHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH-HHHH
Confidence 9999999999999999999999988765421 2358999999999999999999999999995 3 332 2222
Q ss_pred cChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 291 TDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 291 ~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
..-... .....++.++++.|++.+.
T Consensus 268 ~~l~~~-~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 268 FLITQI-HYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHCCCHHHHHHHHHHHHH
Confidence 222211 2334567777777766653
No 145
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.63 E-value=4e-08 Score=93.10 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc--------------chHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE--------------SSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e--------------~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
..+++|..+++.|+|++|+.+|++|++++|++.. ...+|+|+|.||.++|++++|+.+|++||+++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3569999999999999999999999999998620 00389999999999999999999999999999
Q ss_pred CCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 283 YEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 283 p~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
|.+...+.. ... .+....+|.+++..|++.+.
T Consensus 261 p~~~~a~~~-lg~-a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 261 EKNPKALFR-RGK-AKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TTCHHHHHH-HHH-HHHTTTCHHHHHHHHHHTTC
T ss_pred CCCHHHHHH-HHH-HHHHcCCHHHHHHHHHHHHH
Confidence 998763322 122 24455788888888888773
No 146
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.62 E-value=1.2e-07 Score=75.05 Aligned_cols=74 Identities=12% Similarity=0.042 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 214 RREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP----EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 214 ~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~----~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
...+++.+|..+++.|+|..|+..|++|++..+.. ......++++|.||.++|++++|+..+++|+++.|++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 45678999999999999999999999999864221 123678999999999999999999999999999999754
No 147
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.61 E-value=4e-07 Score=83.78 Aligned_cols=113 Identities=12% Similarity=-0.037 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhhccCHHHHH-HHHHHHH-------HcCCH-------HHHHHHHHHHHh-cCCCCCcchHHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQDL-REGLQLY-------RTGKY-------EVAREKFESVLG-SKPTPEESSVASYNVACCY 262 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~-nlG~al~-------~~g~y-------eeAl~~fekALe-ldP~~~e~~~a~yNlA~ay 262 (334)
+.++..|.++++..|.....+ ++|..+. +.|++ ++|+..|++|++ ++|++ ..+|+++|.++
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~---~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---MLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc---HHHHHHHHHHH
Confidence 456678999999999987765 8887776 46886 999999999999 79998 67999999999
Q ss_pred HHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 263 SKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 263 ~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
..+|++++|+..|++||++.|.+...+...-. ..++...++.++++.|++.+
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM-KFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHH-HHHHHHHCHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHH-HHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999999987641111111 11233345666666666655
No 148
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.60 E-value=1.5e-08 Score=77.45 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
.+.++..|.+++++.|+....+ ++|.+++++|+|++|+..|+++++++|++.. ...+++++|.++..+|++++|+.
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 20 YREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence 4567788889999999876654 9999999999999999999999999999721 13689999999999998888877
Q ss_pred HHHH
Q 019871 274 ALED 277 (334)
Q Consensus 274 ~lek 277 (334)
.+++
T Consensus 100 ~~~~ 103 (111)
T 2l6j_A 100 EVDE 103 (111)
T ss_dssp SSSS
T ss_pred HHHH
Confidence 6654
No 149
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.60 E-value=3e-07 Score=81.70 Aligned_cols=128 Identities=8% Similarity=-0.063 Sum_probs=91.0
Q ss_pred HHHhhhhHHHHhhcccchhhhhchhcH----------HHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhc--------c
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGELSE----------KEIIRAERNSGVISNRV--REIQMQNYMKKKEQK--------E 213 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l~e----------k~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~--------~ 213 (334)
+....|.++...+++..+++......+ ......+.+.|.+.... .+.++..|.+++++. +
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 445788888888888888774321111 11123344455444332 355667777777652 2
Q ss_pred CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 214 RREQ-DLREGLQLYRTGKYEVAREKFESVLGSK-----PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 214 ~~~~-~~nlG~al~~~g~yeeAl~~fekALeld-----P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
.... ..++|.++...|+|++|+..|++++++. ++++....+++++|.+|..+|++++|+.+|++++++
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2222 3499999999999999999999999884 333333678999999999999999999999999998
No 150
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.60 E-value=1.3e-07 Score=87.33 Aligned_cols=160 Identities=9% Similarity=-0.026 Sum_probs=106.8
Q ss_pred HHHhhhhHHHHhhcccchhhhhc---hhcHH-----HHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccC------HHH
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG---ELSEK-----EIIRAERNSGVISNRV--REIQMQNYMKKKEQKER------REQ 217 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~---~l~ek-----~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~------~~~ 217 (334)
...+.|.++...+++..+++... ++..+ .....+.+.|.+...+ .+.++..|.+++++.+. ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34677888998888888887422 22111 1123455556555433 35567788888877542 122
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH-----H
Q 019871 218 -DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK-----R 288 (334)
Q Consensus 218 -~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~-----~ 288 (334)
..++|.++.. |+|++|+.+|++|+++.|.... ...+++++|.+|..+|++++|+.+|++|+++.+.+.. .
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 3499999988 9999999999999999876421 1468999999999999999999999999998654321 1
Q ss_pred HhcChhhHHHhcChHHHHHHHHHHHhh
Q 019871 289 VRTDPDLENLRASEEFDVLLKRFDESF 315 (334)
Q Consensus 289 i~~Dpdl~~Lr~dp~F~~lL~~~~e~~ 315 (334)
+...-.+. .....++.+++..|++.+
T Consensus 197 ~~~~~g~~-~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLV-QLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHH-HHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHh
Confidence 11111111 122346777777776655
No 151
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.59 E-value=1.3e-07 Score=96.58 Aligned_cols=100 Identities=11% Similarity=0.053 Sum_probs=88.5
Q ss_pred HHhhchhhhhhhHH----HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 019871 185 RAERNSGVISNRVR----EIQMQNYMKKKEQKERREQDL-REGLQLYRTG-KYEVAREKFESVLGSKPTPEESSVASYNV 258 (334)
Q Consensus 185 ~a~~n~g~~~~~l~----e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g-~yeeAl~~fekALeldP~~~e~~~a~yNl 258 (334)
.+|...+.+...+. +.++..+.+.++++|....+| ++|.++.+.| .++++++.++++|+.+|.+ ..+|+++
T Consensus 108 ~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n---~saW~~r 184 (567)
T 1dce_A 108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN---YSSWHYR 184 (567)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC---HHHHHHH
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC---ccHHHHH
Confidence 46777777776654 667889999999999987766 9999999999 9999999999999999999 6899999
Q ss_pred HHHHHHC--------------CChHHHHHHHHHHHHcCCCCHH
Q 019871 259 ACCYSKL--------------NQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 259 A~ay~~l--------------G~~eeAl~~lekAIelgp~~~~ 287 (334)
+.++..+ +.+++|++++++||+++|++..
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 9999986 5689999999999999998766
No 152
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.58 E-value=6.6e-07 Score=84.25 Aligned_cols=128 Identities=12% Similarity=0.046 Sum_probs=95.3
Q ss_pred HHHhhhhHHHHhhcccchhhhhc---hhcH------HHHHHHhhchhhhhhhH--HHHHHHHHHHHHhhcc---CH----
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG---ELSE------KEIIRAERNSGVISNRV--REIQMQNYMKKKEQKE---RR---- 215 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~---~l~e------k~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~---~~---- 215 (334)
+...+|.++..+++...+++... ++.+ ......+.+.|.+...+ .+.++..|.+++++.+ ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55678999999999888887422 1111 11223455556555443 3566777888777533 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLG-----SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALe-----ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
....++|.++..+|+|++|+..|+++++ .+|.. ..+++++|.+|.++|++++|+.++++|+++.+.
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL---PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 1234999999999999999999999999 67765 689999999999999999999999999998543
No 153
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.56 E-value=9.3e-07 Score=77.50 Aligned_cols=169 Identities=7% Similarity=-0.103 Sum_probs=109.8
Q ss_pred HHhhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhhhh-----HHHHHHHHHHHHHhhccCHHHHHHHHHHHHH--
Q 019871 155 RQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNR-----VREIQMQNYMKKKEQKERREQDLREGLQLYR-- 227 (334)
Q Consensus 155 ~~R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~~-----l~e~q~~~y~~~iel~~~~~~~~nlG~al~~-- 227 (334)
...+|.++...++...+++......+.....+..+.|.++.. -.+.++..|.++++. -.....+++|..+..
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~-g~~~a~~~Lg~~y~~g~ 99 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEA-GSKSGEIVLARVLVNRQ 99 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCC
Confidence 456788888877777777642211111112345555555433 134455666666543 233445699999988
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhc-
Q 019871 228 --TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRA- 300 (334)
Q Consensus 228 --~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~- 300 (334)
.+++++|+..|+++++..|.+. .+.+++++|.+|.. .+++++|+.+|++|+++ +.+.. +...-...-...
T Consensus 100 g~~~d~~~A~~~~~~A~~~~~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~-a~~~Lg~~y~~g~ 176 (212)
T 3rjv_A 100 AGATDVAHAITLLQDAARDSESDA-AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGY-AEYWAGMMFQQGE 176 (212)
T ss_dssp GSSCCHHHHHHHHHHHTSSTTSHH-HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTH-HHHHHHHHHHHCB
T ss_pred CCccCHHHHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHH-HHHHHHHHHHcCC
Confidence 9999999999999999998310 14799999999999 88999999999999999 22222 111112111221
Q ss_pred ----ChHHHHHHHHHHHhh--hchhHHHHHHHh
Q 019871 301 ----SEEFDVLLKRFDESF--INENAINAIKSL 327 (334)
Q Consensus 301 ----dp~F~~lL~~~~e~~--~~~~ai~~~k~~ 327 (334)
.+.+.+++.-|++.. -+..|...+..+
T Consensus 177 gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l 209 (212)
T 3rjv_A 177 KGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRI 209 (212)
T ss_dssp TTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 236888888888876 346666666654
No 154
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.55 E-value=4.6e-07 Score=86.53 Aligned_cols=82 Identities=9% Similarity=-0.049 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH--HhcChhhHHHhcChHHHHHH
Q 019871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR--VRTDPDLENLRASEEFDVLL 308 (334)
Q Consensus 231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~--i~~Dpdl~~Lr~dp~F~~lL 308 (334)
+++|+..|+++++++|.+ ..+++++|.+|..+|++++|+.+|++||++++.+... +...-.-........+.+++
T Consensus 316 ~~~A~~~~~~a~~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDNL---FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHCTTT---CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHHHhhcCCch---hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 344444444444444444 2356677777788888888888888888888764432 11000000122345677777
Q ss_pred HHHHHhh
Q 019871 309 KRFDESF 315 (334)
Q Consensus 309 ~~~~e~~ 315 (334)
+.|.+.+
T Consensus 393 ~~y~kal 399 (472)
T 4g1t_A 393 HHFIEGV 399 (472)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777766
No 155
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.53 E-value=3.9e-07 Score=79.32 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=92.0
Q ss_pred HHHhhhhHHHHhhcccchhhhhc-hhcH---------HHHHHHhhchhhhhhhH--HHHHHHHHHHHHhh--------cc
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG-ELSE---------KEIIRAERNSGVISNRV--REIQMQNYMKKKEQ--------KE 213 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~-~l~e---------k~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel--------~~ 213 (334)
+...+|.++..++++..+++... .+.. .....++.+.|.+.... .+.+...+.+.+++ .|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 45678888888888888887432 1211 11123455555554433 45566777777776 44
Q ss_pred CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------------------------------------
Q 019871 214 RREQD-LREGLQLYRTGKYEVAREKFESVLGSKPT--------------------------------------------- 247 (334)
Q Consensus 214 ~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~--------------------------------------------- 247 (334)
..... .++|.+++.+|++++|+..|++++++.|.
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 43333 49999999999999999999999986221
Q ss_pred -CCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 248 -PEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 248 -~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
++....+++++|.+|..+|++++|+..|++|+++
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1223578999999999999999999999999986
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=3.3e-06 Score=81.27 Aligned_cols=141 Identities=9% Similarity=-0.003 Sum_probs=105.4
Q ss_pred HhhchhhhhhhHH------------HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCc
Q 019871 186 AERNSGVISNRVR------------EIQMQNYMKKKEQKERREQDL-REGLQLYRTGK--YEVAREKFESVLGSKPTPEE 250 (334)
Q Consensus 186 a~~n~g~~~~~l~------------e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~--yeeAl~~fekALeldP~~~e 250 (334)
+|...+.+...+. +.++..+...+..+|+....+ +++.++...++ |++++.+++++++++|.|
T Consensus 66 aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-- 143 (331)
T 3dss_A 66 LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-- 143 (331)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC--
T ss_pred HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC--
Confidence 4555655554432 345677778888999987776 99999999994 999999999999999999
Q ss_pred chHHHHHHHHHHHHCCC-hHHHHHHHHHHHHcCCCCHH-HHhcChhhHHHhc-----------ChHHHHHHHHHHHhh--
Q 019871 251 SSVASYNVACCYSKLNQ-VKAGLSALEDALLAGYEDFK-RVRTDPDLENLRA-----------SEEFDVLLKRFDESF-- 315 (334)
Q Consensus 251 ~~~a~yNlA~ay~~lG~-~eeAl~~lekAIelgp~~~~-~i~~Dpdl~~Lr~-----------dp~F~~lL~~~~e~~-- 315 (334)
..+|++++.++..+|. +++++++++++|+.+|.|.. |...---+..+.. ...+++.|+.+++.+
T Consensus 144 -y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 144 -FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp -HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 6899999999999999 59999999999999999887 4333323333311 145677777777666
Q ss_pred --hchhHHHHHHHhhc
Q 019871 316 --INENAINAIKSLFG 329 (334)
Q Consensus 316 --~~~~ai~~~k~~~~ 329 (334)
.++.|-.-.+.+++
T Consensus 223 ~P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 223 DPNDQSAWFYHRWLLG 238 (331)
T ss_dssp STTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 45555555555554
No 157
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.51 E-value=1.7e-08 Score=100.43 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=89.9
Q ss_pred hhhhHHHHhhcccchhhhhc-hhcHHH-HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCH
Q 019871 157 RVGPLLMKMQKRYGKMEQTG-ELSEKE-IIRAERNSGVISNRV--REIQMQNYMKKKEQKERREQDL-REGLQLYRTGKY 231 (334)
Q Consensus 157 R~G~V~lkLek~~~aie~~~-~l~ek~-~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~y 231 (334)
..|.++.+.+++.++++... .+.... ....+.+.|.++..+ .+.++..|.+++++.|+....+ ++|.+++++|+|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34555556666666665322 111110 123344555554433 4677889999999999876665 999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHH--HHHCCChHHHHHHHH-----------HHHHcCCCCH
Q 019871 232 EVAREKFESVLGSKPTPEESSVASYNVACC--YSKLNQVKAGLSALE-----------DALLAGYEDF 286 (334)
Q Consensus 232 eeAl~~fekALeldP~~~e~~~a~yNlA~a--y~~lG~~eeAl~~le-----------kAIelgp~~~ 286 (334)
++|++.|+++++++|++ ..++++++.+ +..+|++++|++.++ ++++++|.+.
T Consensus 91 ~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 91 RAALRDYETVVKVKPHD---KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHHHHHHHHHHHSTTC---TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 99999999999999998 4689999999 889999999999999 8888888743
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.46 E-value=8.3e-07 Score=86.17 Aligned_cols=164 Identities=14% Similarity=-0.029 Sum_probs=118.0
Q ss_pred HHhhcccchhhhhchhcHHH--HHHHhhchhhhhhhH---HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHc-C-CHHHH
Q 019871 163 MKMQKRYGKMEQTGELSEKE--IIRAERNSGVISNRV---REIQMQNYMKKKEQKERREQDL-REGLQLYRT-G-KYEVA 234 (334)
Q Consensus 163 lkLek~~~aie~~~~l~ek~--~~~a~~n~g~~~~~l---~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~-g-~yeeA 234 (334)
.+.+...++++......+.. ...+|...+.+...+ .+.++..+...++.+|+...++ +++.++... + +++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 34455555665322111111 124566666666444 3566788888999999988776 999999888 8 99999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChH--------HHHHHHHHHHHcCCCCHH-HHhcChhhHHHhc---C-
Q 019871 235 REKFESVLGSKPTPEESSVASYNVACCYSKLNQVK--------AGLSALEDALLAGYEDFK-RVRTDPDLENLRA---S- 301 (334)
Q Consensus 235 l~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~e--------eAl~~lekAIelgp~~~~-~i~~Dpdl~~Lr~---d- 301 (334)
++.++++|+++|.+ ..+|++++-++..+|.++ +++++++++|+.+|.|.. |..+---+..+.. .
T Consensus 145 L~~~~k~L~~dpkN---y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 145 IEYIHGSLLPDPKN---YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHTSSCTTC---HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHhCCCC---HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccch
Confidence 99999999999999 689999999999999988 999999999999999887 4333222211211 0
Q ss_pred hHHHHHHHHHHHhh----hchhHHHHHHHhhc
Q 019871 302 EEFDVLLKRFDESF----INENAINAIKSLFG 329 (334)
Q Consensus 302 p~F~~lL~~~~e~~----~~~~ai~~~k~~~~ 329 (334)
..+++.|+.+++.+ .|+.|-...+.++.
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 12677777776666 67778877777776
No 159
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.45 E-value=1.6e-07 Score=71.13 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhhccCHHH-H-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871 198 REIQMQNYMKKKEQKERREQ-D-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSAL 275 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~-~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~l 275 (334)
.+.++..|.+.+++.|.... . +++|.+++.+|+|++|+..|+++++++|++ ..++++ +.+.+++..|
T Consensus 16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~--------~~~~~a~~~~ 84 (99)
T 2kc7_A 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS---PALQAR--------KMVMDILNFY 84 (99)
T ss_dssp HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---THHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHH--------HHHHHHHHHH
Confidence 35567788888899998765 4 599999999999999999999999999998 456655 6788999999
Q ss_pred HHHHHcCCCC
Q 019871 276 EDALLAGYED 285 (334)
Q Consensus 276 ekAIelgp~~ 285 (334)
++++..+|++
T Consensus 85 ~~~~~~~p~~ 94 (99)
T 2kc7_A 85 NKDMYNQLEH 94 (99)
T ss_dssp CCTTHHHHCC
T ss_pred HHHhccCccc
Confidence 9998887764
No 160
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.43 E-value=9.6e-07 Score=82.53 Aligned_cols=131 Identities=16% Similarity=0.074 Sum_probs=88.7
Q ss_pred HHHhhhhHHHHhhcccchhhhhc-hhcH------HH-HHHHhhchhhhhhhHHH-------------------HHHHHHH
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG-ELSE------KE-IIRAERNSGVISNRVRE-------------------IQMQNYM 206 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~-~l~e------k~-~~~a~~n~g~~~~~l~e-------------------~q~~~y~ 206 (334)
+...+|.++..++++..+++... .+.. .. ....+.+.|.++..... .++..|.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 44567888888888888877432 1111 11 12344555555543333 3445555
Q ss_pred HHHhhccC------H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHH
Q 019871 207 KKKEQKER------R-EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALE 276 (334)
Q Consensus 207 ~~iel~~~------~-~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~le 276 (334)
+.+++.+. . ....++|.+++..|+|++|+..|++++++.|.... ...+++++|.+|..+|++++|+.+|+
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 55543211 1 12349999999999999999999999998776421 12489999999999999999999999
Q ss_pred HHHHcCCC
Q 019871 277 DALLAGYE 284 (334)
Q Consensus 277 kAIelgp~ 284 (334)
+|+++.+.
T Consensus 288 ~al~~~~~ 295 (411)
T 4a1s_A 288 RTLALAVE 295 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988664
No 161
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.42 E-value=2.4e-06 Score=67.63 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~---e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
++|.+++..|+|++|+..|++++++.+... ....+++++|.+|..+|++++|+.++++|+++
T Consensus 94 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 94 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555555555555555555554422110 11234555555555555555555555555544
No 162
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.42 E-value=1.8e-06 Score=82.01 Aligned_cols=85 Identities=6% Similarity=-0.202 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhhccCHHHHH-HHHHHHHHcC--CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH----HHC---CChH
Q 019871 200 IQMQNYMKKKEQKERREQDL-REGLQLYRTG--KYEVAREKFESVLGSKPTPEESSVASYNVACCY----SKL---NQVK 269 (334)
Q Consensus 200 ~q~~~y~~~iel~~~~~~~~-nlG~al~~~g--~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay----~~l---G~~e 269 (334)
.++..+.+.++++|....++ .+|.++..++ +++++++.++++|..+|++ ..+|++++.++ ..+ ++++
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~---y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN---YQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC---CHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc---HHHHHHHHHHHHHHHHhccccCCHH
Confidence 35677888999999998876 9999999999 9999999999999999999 58999999999 888 8999
Q ss_pred HHHHHHHHHHHcCCCCHH
Q 019871 270 AGLSALEDALLAGYEDFK 287 (334)
Q Consensus 270 eAl~~lekAIelgp~~~~ 287 (334)
+++..++++|+.+|.++.
T Consensus 128 ~EL~~~~~~l~~~pkny~ 145 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHH 145 (306)
T ss_dssp HHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhCCCCHH
Confidence 999999999999999887
No 163
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.42 E-value=1.1e-06 Score=82.66 Aligned_cols=158 Identities=9% Similarity=-0.004 Sum_probs=104.5
Q ss_pred hhhhHHHHhhcccchhhhhc---hhcH----H-HHHHHhhchhhhhhhH--HHHHHHHHHHHHhhccC----H---H-HH
Q 019871 157 RVGPLLMKMQKRYGKMEQTG---ELSE----K-EIIRAERNSGVISNRV--REIQMQNYMKKKEQKER----R---E-QD 218 (334)
Q Consensus 157 R~G~V~lkLek~~~aie~~~---~l~e----k-~~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~----~---~-~~ 218 (334)
..|..+...+++..+++... .+.. . .....+.+.|.+...+ .+.++..+.+++++.+. . . ..
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 46777777778888776322 1211 1 1123455556555433 45667778888876543 1 1 12
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHHHHCCChHHHHHHHHHHHH-----cCCCCHHHHh
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVACCYSKLNQVKAGLSALEDALL-----AGYEDFKRVR 290 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~---e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe-----lgp~~~~~i~ 290 (334)
.++|.++..+|+|++|+..|++|+++.+... ....+++|+|.+|..+|++++|+.+|++|++ .+|.. ..+.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHH
Confidence 4999999999999999999999998754321 1257899999999999999999999999999 55553 2222
Q ss_pred cChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 291 TDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 291 ~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
..-... .....++++++..+++.+.
T Consensus 265 ~~la~~-~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 265 FGLSWT-LCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHCCCHHHHHHHHHHHHH
Confidence 222211 2334567777777766653
No 164
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=8.4e-07 Score=83.77 Aligned_cols=134 Identities=10% Similarity=0.065 Sum_probs=89.0
Q ss_pred hhhHHHHhhcccchhhhhchhc---HHHHHHHhhchhhhhhhHH--HHHHHHHHHHHhhccC---HHHHHHHHHHHHHcC
Q 019871 158 VGPLLMKMQKRYGKMEQTGELS---EKEIIRAERNSGVISNRVR--EIQMQNYMKKKEQKER---REQDLREGLQLYRTG 229 (334)
Q Consensus 158 ~G~V~lkLek~~~aie~~~~l~---ek~~~~a~~n~g~~~~~l~--e~q~~~y~~~iel~~~---~~~~~nlG~al~~~g 229 (334)
.+.++..++++.++.+....+. +.. . ..+..+.+....+ ..++..+.......++ +...+++|.++.++|
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~-~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEH-L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHH-H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCch-H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence 4556677778888776433222 221 1 2333443332221 2222222222211111 234579999999999
Q ss_pred CHHHHHHHHHHHHhcC--CCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH--HHhcChhhH
Q 019871 230 KYEVAREKFESVLGSK--PTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK--RVRTDPDLE 296 (334)
Q Consensus 230 ~yeeAl~~fekALeld--P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~--~i~~Dpdl~ 296 (334)
++++|+.+|++++... |.. ...+++++|.|+..+|+.++|...|++++..+|+ .. ..+.||.+-
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~--~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~~ 253 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEAC--ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPSYR 253 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTT--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTCC
T ss_pred CHHHHHHHHHHHhcCCCCccc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCCC
Confidence 9999999999999654 552 2579999999999999999999999999999998 55 667777764
No 165
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.40 E-value=7.6e-07 Score=69.51 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHH
Q 019871 232 EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRF 311 (334)
Q Consensus 232 eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~ 311 (334)
++|+..|+++++.+|++ +.+|+++|.+|..+|++++|+.+|++|++++|.+...... -.. .+....++.+++..|
T Consensus 2 ~~a~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~-~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW-LGK-TLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHH-HHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHH-HHH-HHHHcCCHHHHHHHH
Confidence 46899999999999998 6899999999999999999999999999999997763221 111 123345677777777
Q ss_pred HHhh
Q 019871 312 DESF 315 (334)
Q Consensus 312 ~e~~ 315 (334)
++.+
T Consensus 77 ~~al 80 (115)
T 2kat_A 77 ESGL 80 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 166
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.39 E-value=1e-06 Score=80.34 Aligned_cols=85 Identities=16% Similarity=0.062 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhccCH------H-HHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCCcc-hHHHHHHHHHHHHCC
Q 019871 198 REIQMQNYMKKKEQKERR------E-QDLREGLQLYRTGKYEVAREKFESVL---GSKPTPEES-SVASYNVACCYSKLN 266 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~------~-~~~nlG~al~~~g~yeeAl~~fekAL---eldP~~~e~-~~a~yNlA~ay~~lG 266 (334)
.+.++..|.+++++.+.. . ...++|.+++..|+|++|+..|++|+ +..|++... ..+++|+|.+|..+|
T Consensus 131 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 2qfc_A 131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp HHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh
Confidence 344555666666543221 1 22377777777777777777777777 334443110 146777777777777
Q ss_pred ChHHHHHHHHHHHHcC
Q 019871 267 QVKAGLSALEDALLAG 282 (334)
Q Consensus 267 ~~eeAl~~lekAIelg 282 (334)
++++|+.++++|+++.
T Consensus 211 ~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 211 RYEESLYQVNKAIEIS 226 (293)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7777777777777654
No 167
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.38 E-value=1.8e-06 Score=63.37 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC
Q 019871 198 REIQMQNYMKKKEQKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN 266 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG 266 (334)
.+.++..|.+++++.|..... +++|.++++.|++++|+..|+++++++|++ ..+++++|.++..+|
T Consensus 25 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcC
Confidence 345667788888888876555 599999999999999999999999999998 689999999998765
No 168
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.38 E-value=1.6e-06 Score=68.00 Aligned_cols=69 Identities=13% Similarity=-0.039 Sum_probs=61.9
Q ss_pred cCHHH-HHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 213 ERREQ-DLREGLQLYRTGK---YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 213 ~~~~~-~~nlG~al~~~g~---yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
|++.+ ...+|.+++..++ .++|...+++|+++||++ ..+++.+|..+...|++++|+..++++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~---~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN---EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44444 4599999987666 799999999999999999 789999999999999999999999999999998
No 169
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.37 E-value=5.6e-07 Score=82.11 Aligned_cols=95 Identities=14% Similarity=0.020 Sum_probs=71.2
Q ss_pred hhhhhhh--HHHHHHHHHHHHHhhccCH------H-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC-CcchHHHH
Q 019871 190 SGVISNR--VREIQMQNYMKKKEQKERR------E-QDLREGLQLYRTGKYEVAREKFESVLGSKP---TP-EESSVASY 256 (334)
Q Consensus 190 ~g~~~~~--l~e~q~~~y~~~iel~~~~------~-~~~nlG~al~~~g~yeeAl~~fekALeldP---~~-~e~~~a~y 256 (334)
.|.+... ..+.++..|.+++++.+.. . ...++|.+++.+|+|++|+.+|+++++.-. .+ .....+++
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 4444433 2366778888888754331 1 235999999999999999999999995321 11 12256899
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 257 NVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 257 NlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
|+|.+|..+|++++|+.++++||++.+.
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998543
No 170
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.37 E-value=4.2e-06 Score=77.09 Aligned_cols=131 Identities=15% Similarity=0.072 Sum_probs=89.3
Q ss_pred HHHhhhhHHHHhhcccchhhhhc---hhcHHH-----HHHHhhchhhhhhhHH----------------------HHHHH
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG---ELSEKE-----IIRAERNSGVISNRVR----------------------EIQMQ 203 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~---~l~ek~-----~~~a~~n~g~~~~~l~----------------------e~q~~ 203 (334)
+....|.++..++++..+++... ++.++. ....+.+.|.+..... +.++.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 44567888888888888876422 121111 1123445554443333 23344
Q ss_pred HHHHHHhhc------cCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHH
Q 019871 204 NYMKKKEQK------ERRE-QDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 204 ~y~~~iel~------~~~~-~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
.|.+++++. +... ...++|.+++..|+|++|+..|++++++.|+... ...+++++|.+|..+|++++|+.
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 555555431 1112 2349999999999999999999999998776531 13489999999999999999999
Q ss_pred HHHHHHHcCCC
Q 019871 274 ALEDALLAGYE 284 (334)
Q Consensus 274 ~lekAIelgp~ 284 (334)
+|++|+++.+.
T Consensus 249 ~~~~al~~~~~ 259 (406)
T 3sf4_A 249 YYKKTLLLARQ 259 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 171
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.36 E-value=1.1e-05 Score=73.37 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHH---HcCCCCHH---HH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDAL---LAGYEDFK---RV 289 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAI---elgp~~~~---~i 289 (334)
+.+|..+...|+|++|+..|++++++.+.... ...+++++|.+|..+|++++|+.+|++|+ +..+.+.. .+
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~ 198 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence 47888899999999999999999987665421 14589999999999999999999999999 44555432 23
Q ss_pred hcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 290 RTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 290 ~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
..+-... +....+|.++++.|++.+.
T Consensus 199 ~~nlg~~-y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 199 RYNHAKA-LYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHH-HHHHhhHHHHHHHHHHHHH
Confidence 3333322 3445678888888777763
No 172
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.35 E-value=3.9e-06 Score=77.31 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=92.6
Q ss_pred HHHhhhhHHHHhhc--------------------ccchhhhhc-hhc--H----HH-HHHHhhchhhhhhhH--HHHHHH
Q 019871 154 IRQRVGPLLMKMQK--------------------RYGKMEQTG-ELS--E----KE-IIRAERNSGVISNRV--REIQMQ 203 (334)
Q Consensus 154 i~~R~G~V~lkLek--------------------~~~aie~~~-~l~--e----k~-~~~a~~n~g~~~~~l--~e~q~~ 203 (334)
+...+|.++..+++ +..+++... .+. + .. ....+.+.|.+.... .+.++.
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 55678888888888 666666322 111 1 11 123344555555433 355667
Q ss_pred HHHHHHhhccCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHH
Q 019871 204 NYMKKKEQKERR-------EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 204 ~y~~~iel~~~~-------~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
.+.+++++.+.. ....++|.+++..|++++|+..|++++++.|+... ...+++++|.+|..+|++++|+.
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 777777664432 12349999999999999999999999988776421 14689999999999999999999
Q ss_pred HHHHHHHcCCC
Q 019871 274 ALEDALLAGYE 284 (334)
Q Consensus 274 ~lekAIelgp~ 284 (334)
+|++|+++.+.
T Consensus 289 ~~~~a~~~~~~ 299 (406)
T 3sf4_A 289 YHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998554
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.34 E-value=4.7e-06 Score=80.25 Aligned_cols=100 Identities=11% Similarity=0.046 Sum_probs=86.3
Q ss_pred HHhhchhhhhhhH----HHHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 019871 185 RAERNSGVISNRV----REIQMQNYMKKKEQKERREQDL-REGLQLYRTGK-YEVAREKFESVLGSKPTPEESSVASYNV 258 (334)
Q Consensus 185 ~a~~n~g~~~~~l----~e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~-yeeAl~~fekALeldP~~~e~~~a~yNl 258 (334)
.+|...+.+...+ .+.++..+.+.++++|.+..++ +++.++...|+ +++++++++++|+.+|.| ..+|+++
T Consensus 109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N---~SAW~~R 185 (331)
T 3dss_A 109 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN---YSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC---HHHHHHH
T ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC---HHHHHHH
Confidence 3566666666544 2456778999999999987766 99999999999 699999999999999999 6899999
Q ss_pred HHHHHHC--------------CChHHHHHHHHHHHHcCCCCHH
Q 019871 259 ACCYSKL--------------NQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 259 A~ay~~l--------------G~~eeAl~~lekAIelgp~~~~ 287 (334)
+.++..+ +.++++++++++||..+|+|..
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S 228 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 228 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 9999988 5689999999999999999887
No 174
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.34 E-value=2.3e-06 Score=74.95 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=77.0
Q ss_pred Hhhchhhhhhh------HHHHHHHHHHHHHhhccC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcch
Q 019871 186 AERNSGVISNR------VREIQMQNYMKKKEQKER---REQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESS 252 (334)
Q Consensus 186 a~~n~g~~~~~------l~e~q~~~y~~~iel~~~---~~~~~nlG~al~~----~g~yeeAl~~fekALeldP~~~e~~ 252 (334)
+..+.|.++.. -.+.++.-|.++++..+. ....+++|..+.. .+++++|+..|++++++ |.+ +
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~---~ 162 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT---G 162 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT---T
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC---H
Confidence 44455554432 345667788888887774 4556799999999 99999999999999998 555 4
Q ss_pred HHHHHHHHHHHHC-C-----ChHHHHHHHHHHHHcCCCCH
Q 019871 253 VASYNVACCYSKL-N-----QVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 253 ~a~yNlA~ay~~l-G-----~~eeAl~~lekAIelgp~~~ 286 (334)
.+++++|.+|... | ++++|+.+|++|++.|....
T Consensus 163 ~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A 202 (212)
T 3rjv_A 163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTG 202 (212)
T ss_dssp HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 6999999999864 3 89999999999999987643
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.33 E-value=4e-06 Score=66.34 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
..++|.+++..|+|++|+..|++++++.+.... ...+++++|.+|..+|++++|+..+++|+++.
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 458999999999999999999999988655321 24689999999999999999999999999874
No 176
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.32 E-value=3e-06 Score=71.00 Aligned_cols=128 Identities=11% Similarity=0.052 Sum_probs=64.4
Q ss_pred HHHhhhhHHHHhhcccchhhhhc-hhc------HHH-HHHHhhchhhhhhhH--HHHHHHHHHHHHhh---cc-CH----
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG-ELS------EKE-IIRAERNSGVISNRV--REIQMQNYMKKKEQ---KE-RR---- 215 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~-~l~------ek~-~~~a~~n~g~~~~~l--~e~q~~~y~~~iel---~~-~~---- 215 (334)
+....|.++...+++..+++... .+. ... ....+.+.|.+.... .+.+...+.+++++ .+ ..
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 44556667777666666665322 111 011 112233333333222 23344455555544 22 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
....++|.++...|++++|+..|++++++.+.... ...++.++|.+|..+|++++|+.++++|+++
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11236666666666666666666666654322210 1234566666666666666666666666665
No 177
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.27 E-value=2.2e-06 Score=78.03 Aligned_cols=96 Identities=14% Similarity=0.074 Sum_probs=71.9
Q ss_pred HhhchhhhhhhH--HHHHHHHHHHHHhhc----cCH---H-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---cch
Q 019871 186 AERNSGVISNRV--REIQMQNYMKKKEQK----ERR---E-QDLREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESS 252 (334)
Q Consensus 186 a~~n~g~~~~~l--~e~q~~~y~~~iel~----~~~---~-~~~nlG~al~~~g~yeeAl~~fekALeldP~~~---e~~ 252 (334)
.+.+.|.++..+ .+.+...|.++++.. ... . ..+++|.+++++|+|++|+..|++++++.++.. ..+
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 345556555433 355667777777421 111 1 235999999999999999999999998876542 125
Q ss_pred HHHHHHHHHHHHCCC-hHHHHHHHHHHHHc
Q 019871 253 VASYNVACCYSKLNQ-VKAGLSALEDALLA 281 (334)
Q Consensus 253 ~a~yNlA~ay~~lG~-~eeAl~~lekAIel 281 (334)
.+|+++|.||..+|+ +++|+.+|++|+++
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 799999999999995 69999999999987
No 178
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.25 E-value=3.2e-06 Score=73.06 Aligned_cols=83 Identities=11% Similarity=0.119 Sum_probs=69.8
Q ss_pred HHHHHHHhhcc-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 203 QNYMKKKEQKE-RREQDLREGLQLYRTG---KYEVAREKFESVLGSK-PTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 203 ~~y~~~iel~~-~~~~~~nlG~al~~~g---~yeeAl~~fekALeld-P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
..|.+.++..+ .....|+.|.++.+.+ ++++++..+++.++.+ |+. ....+|++|.+|.++|++++|++++++
T Consensus 19 ~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~--~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 19 KKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE--QRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc--hHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45666555444 4456689999999988 7889999999999998 732 157999999999999999999999999
Q ss_pred HHHcCCCCHH
Q 019871 278 ALLAGYEDFK 287 (334)
Q Consensus 278 AIelgp~~~~ 287 (334)
+|++.|++..
T Consensus 97 lL~ieP~n~Q 106 (152)
T 1pc2_A 97 LLQTEPQNNQ 106 (152)
T ss_dssp HHHHCTTCHH
T ss_pred HHhcCCCCHH
Confidence 9999999765
No 179
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.23 E-value=6e-06 Score=73.05 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
++|.++...|++++|+..|++++++.|+... ...+++++|.+|..+|++++|+.++++|+++.
T Consensus 228 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 228 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555443210 12455555555555555555555555555543
No 180
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.23 E-value=9.4e-06 Score=75.76 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhhccCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCCcchHHHHHHHHHHHHCC
Q 019871 198 REIQMQNYMKKKEQKERRE-----QDLREGLQLYRTGKYEVAREKFESVLGS------KPTPEESSVASYNVACCYSKLN 266 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~-----~~~nlG~al~~~g~yeeAl~~fekALel------dP~~~e~~~a~yNlA~ay~~lG 266 (334)
.+.++..|.+++++.|++. ..+.+|.+++..|+|++|+..|++++++ +|.. ..+++++|.+|..+|
T Consensus 64 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE---AKSSGNLGNTLKVMG 140 (411)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH---HHHHHHHHHHHHHCC
Confidence 3456667777777777754 2459999999999999999999999988 4443 689999999999999
Q ss_pred ChHHHHHHHHHHHHcC
Q 019871 267 QVKAGLSALEDALLAG 282 (334)
Q Consensus 267 ~~eeAl~~lekAIelg 282 (334)
++++|+.+|++|+++.
T Consensus 141 ~~~~A~~~~~~al~~~ 156 (411)
T 4a1s_A 141 RFDEAAICCERHLTLA 156 (411)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999983
No 181
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.20 E-value=2.9e-05 Score=64.93 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhhc------cCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCC-cchHHHHHHHHHHHHCC
Q 019871 198 REIQMQNYMKKKEQK------ERREQ-DLREGLQLYRTGKYEVAREKFESVLGS---KPTPE-ESSVASYNVACCYSKLN 266 (334)
Q Consensus 198 ~e~q~~~y~~~iel~------~~~~~-~~nlG~al~~~g~yeeAl~~fekALel---dP~~~-e~~~a~yNlA~ay~~lG 266 (334)
.+.++..|.+++++. +.... ..++|.++...|+|++|+..|++++++ .++++ ....+++++|.+|..+|
T Consensus 42 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g 121 (203)
T 3gw4_A 42 FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG 121 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC
Confidence 344556666666532 21222 349999999999999999999999988 44221 12578999999999999
Q ss_pred ChHHHHHHHHHHHHcC
Q 019871 267 QVKAGLSALEDALLAG 282 (334)
Q Consensus 267 ~~eeAl~~lekAIelg 282 (334)
++++|+.++++|+++.
T Consensus 122 ~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 122 DLAGARQEYEKSLVYA 137 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999873
No 182
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.20 E-value=2.6e-05 Score=75.59 Aligned_cols=85 Identities=5% Similarity=-0.091 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhhccCHHHHH-HHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC-C-ChHHHHHHH
Q 019871 200 IQMQNYMKKKEQKERREQDL-REGLQLYRTG-KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL-N-QVKAGLSAL 275 (334)
Q Consensus 200 ~q~~~y~~~iel~~~~~~~~-nlG~al~~~g-~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l-G-~~eeAl~~l 275 (334)
.++..+.+.++++|.....+ .+|.++..+| .+++++..++++|..+|++ ..+|++|+.++..+ + +++++++.+
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn---y~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS---YQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 46678889999999988876 9999999999 5999999999999999999 78999999999998 8 999999999
Q ss_pred HHHHHcCCCCHH
Q 019871 276 EDALLAGYEDFK 287 (334)
Q Consensus 276 ekAIelgp~~~~ 287 (334)
+++|+.+|.++.
T Consensus 149 ~k~L~~dpkNy~ 160 (349)
T 3q7a_A 149 HGSLLPDPKNYH 160 (349)
T ss_dssp HHHTSSCTTCHH
T ss_pred HHHHHhCCCCHH
Confidence 999999999887
No 183
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.17 E-value=1.3e-05 Score=70.92 Aligned_cols=87 Identities=14% Similarity=0.027 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhhccCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CCcchHHHHHHHHHHHHCCChH
Q 019871 198 REIQMQNYMKKKEQKERREQ-----DLREGLQLYRTGKYEVAREKFESVLGSKPT---PEESSVASYNVACCYSKLNQVK 269 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~-----~~nlG~al~~~g~yeeAl~~fekALeldP~---~~e~~~a~yNlA~ay~~lG~~e 269 (334)
.+.++..|.+.+++.|.+.. ...+|.+++..|+|++|+..|++++++.+. .+....+++++|.+|..+|+++
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 100 (338)
T 3ro2_A 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD 100 (338)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHH
Confidence 34456677777777777532 349999999999999999999999987321 1112578999999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 019871 270 AGLSALEDALLAGYE 284 (334)
Q Consensus 270 eAl~~lekAIelgp~ 284 (334)
+|+..+++|+++.+.
T Consensus 101 ~A~~~~~~al~~~~~ 115 (338)
T 3ro2_A 101 EAIVCCQRHLDISRE 115 (338)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998654
No 184
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.15 E-value=2.5e-06 Score=80.58 Aligned_cols=114 Identities=6% Similarity=-0.087 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871 201 QMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe 280 (334)
+...+...+...|.+...|.+|.++++.++|++|+..|++++...+.. ....++|++|+++..+|++++|+.+|++++.
T Consensus 121 A~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~-~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 121 AMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF-LAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc-cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 333343333345655666899999999999999999999888763221 0135899999999999999999999999996
Q ss_pred cC--CCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 281 AG--YEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 281 lg--p~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
-. |.....+.-...+ .|+..+++.++...|++.+.
T Consensus 200 g~~~P~~~~da~~~~gl-aL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 200 SPAGEACARAIAWYLAM-ARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp STTTTTTHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCccccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Confidence 54 4423222222232 36667788888888888774
No 185
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.13 E-value=1.3e-05 Score=78.25 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=72.4
Q ss_pred Hhhchhhhhhh-----HHHHHHHHHHHHHhhccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcchHHHH
Q 019871 186 AERNSGVISNR-----VREIQMQNYMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASY 256 (334)
Q Consensus 186 a~~n~g~~~~~-----l~e~q~~~y~~~iel~~~~~~~~nlG~al~~----~g~yeeAl~~fekALeldP~~~e~~~a~y 256 (334)
++.+.|.++.. ..+.++..|.++++. ......+++|..++. .+++++|+.+|++|++.. + +.+++
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~ 403 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--L---SAAQV 403 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---HHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--C---HHHHH
Confidence 34445544432 335566777777765 334556799999999 899999999999999864 3 57999
Q ss_pred HHHHHHHH----CCChHHHHHHHHHHHHcCCC
Q 019871 257 NVACCYSK----LNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 257 NlA~ay~~----lG~~eeAl~~lekAIelgp~ 284 (334)
++|.+|.. .+++++|+.+|++|++.+|+
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 99999998 89999999999999999954
No 186
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.13 E-value=2.8e-05 Score=76.72 Aligned_cols=83 Identities=12% Similarity=-0.031 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhccCHHHHH-HHHHHHHH-------cCCHH-------HHHHHHHHHHh-cCCCCCcchHHHHHHHHHHHH
Q 019871 201 QMQNYMKKKEQKERREQDL-REGLQLYR-------TGKYE-------VAREKFESVLG-SKPTPEESSVASYNVACCYSK 264 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~~-nlG~al~~-------~g~ye-------eAl~~fekALe-ldP~~~e~~~a~yNlA~ay~~ 264 (334)
.+..|.++++..|.....+ ++|..+.+ .|+++ +|+..|++|++ ++|++ ..+|+++|..+..
T Consensus 257 a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 257 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---MLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHh
Confidence 3467888888888776665 77777765 78877 88999999997 78887 6788888988888
Q ss_pred CCChHHHHHHHHHHHHcCCCCH
Q 019871 265 LNQVKAGLSALEDALLAGYEDF 286 (334)
Q Consensus 265 lG~~eeAl~~lekAIelgp~~~ 286 (334)
.|++++|...|++|+++.|.+.
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~ 355 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDP 355 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCH
T ss_pred cCCHHHHHHHHHHHhCccccCc
Confidence 8999999999999999888764
No 187
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.06 E-value=4.1e-05 Score=85.78 Aligned_cols=121 Identities=11% Similarity=0.011 Sum_probs=85.9
Q ss_pred chhhHHHHHHH-------hhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcc---CH
Q 019871 146 EYGRTMYTIRQ-------RVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISNRVREIQMQNYMKKKEQKE---RR 215 (334)
Q Consensus 146 ~~~~v~sai~~-------R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~~l~e~q~~~y~~~iel~~---~~ 215 (334)
|.++++..|.. .+|.++..++.+.+|++.+....... .+.... -.++.++.++++..+ .+
T Consensus 1036 D~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~~~-----~A~~VL-----ie~i~nldrAiE~Aervn~p 1105 (1630)
T 1xi4_A 1036 DRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT-----SAVQVL-----IEHIGNLDRAYEFAERCNEP 1105 (1630)
T ss_pred ChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCCHH-----HHHHHH-----HHHHhhHHHHHHHHHhcCCH
Confidence 45566665553 57888888888888887433211110 001111 124456666655442 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
..++++|.++...|+|++|+++|.+| ++ +.+|+++|.++.++|++++|+++|..|++..++
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-----dD---~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DD---PSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc-----CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 55669999999999999999999887 44 568999999999999999999999999988754
No 188
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.02 E-value=0.00024 Score=69.51 Aligned_cols=64 Identities=8% Similarity=-0.017 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
-++..+...|++++|+..+++|++++|. ..+|.-+|.++...|++++|++.|++|+.++|....
T Consensus 282 alal~~l~~gd~d~A~~~l~rAl~Ln~s----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 282 IKAVSALVKGKTDESYQAINTGIDLEMS----WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 4566666789999999999999999975 468889999999999999999999999999998543
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.02 E-value=6.6e-05 Score=61.74 Aligned_cols=78 Identities=14% Similarity=0.024 Sum_probs=64.2
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHHHH
Q 019871 201 QMQNYMKKKEQKERREQDLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGL 272 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~~nlG~al~~----~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~eeAl 272 (334)
++.-|.++++. -.....+++|..++. .+++++|+..|++|.+. .+ +.+++++|.+|.. .+++++|+
T Consensus 44 A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~---~~a~~~Lg~~y~~G~g~~~d~~~A~ 117 (138)
T 1klx_A 44 LFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--ND---QDGCLILGYKQYAGKGVVKNEKQAV 117 (138)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TC---HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CC---HHHHHHHHHHHHCCCCCCcCHHHHH
Confidence 56666666654 334556799999998 89999999999999987 33 5799999999999 89999999
Q ss_pred HHHHHHHHcCCC
Q 019871 273 SALEDALLAGYE 284 (334)
Q Consensus 273 ~~lekAIelgp~ 284 (334)
.+|++|.+.+..
T Consensus 118 ~~~~~Aa~~g~~ 129 (138)
T 1klx_A 118 KTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHCCCH
Confidence 999999998764
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.01 E-value=3.9e-05 Score=77.32 Aligned_cols=90 Identities=10% Similarity=-0.009 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhc-----cCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCcchHHHHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQK-----ERREQ----DLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSK 264 (334)
Q Consensus 199 e~q~~~y~~~iel~-----~~~~~----~~nlG~al~~~g~yeeAl~~fekALel-----dP~~~e~~~a~yNlA~ay~~ 264 (334)
+.+..-|.+++++. ++... ..++|.+|..+|+|++|+..|+++|++ -|++++.+..++|+|.+|..
T Consensus 326 ~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 405 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWH 405 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 44555566666543 22222 239999999999999999999999976 46776667899999999999
Q ss_pred CCChHHHHHHHHHHHHc-----CCCCHHH
Q 019871 265 LNQVKAGLSALEDALLA-----GYEDFKR 288 (334)
Q Consensus 265 lG~~eeAl~~lekAIel-----gp~~~~~ 288 (334)
+|++++|+..|++|+++ ||+.+..
T Consensus 406 ~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 434 (490)
T 3n71_A 406 AGHIEVGHGMICKAYAILLVTHGPSHPIT 434 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999874 7776553
No 191
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.99 E-value=2.8e-05 Score=76.65 Aligned_cols=85 Identities=9% Similarity=0.010 Sum_probs=63.6
Q ss_pred HHHHHHHHHHh-hccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 200 IQMQNYMKKKE-QKERREQD-LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 200 ~q~~~y~~~ie-l~~~~~~~-~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
.+...|.++++ +.|+.... +.+|..+.+.|++++|...|+++++++|.++ ..+|.+.+.++.++|++++|+..|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc--hHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45667777776 67765554 4788888888888888888888888888762 24788888888778888888888888
Q ss_pred HHHcCCCCH
Q 019871 278 ALLAGYEDF 286 (334)
Q Consensus 278 AIelgp~~~ 286 (334)
|++..|...
T Consensus 382 Al~~~~~~~ 390 (530)
T 2ooe_A 382 AREDARTRH 390 (530)
T ss_dssp HHTCTTCCT
T ss_pred HHhccCCch
Confidence 887766543
No 192
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.98 E-value=2.8e-05 Score=77.15 Aligned_cols=83 Identities=12% Similarity=0.014 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhhc-----cCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCcchHHHHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQK-----ERREQ----DLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSK 264 (334)
Q Consensus 199 e~q~~~y~~~iel~-----~~~~~----~~nlG~al~~~g~yeeAl~~fekALel-----dP~~~e~~~a~yNlA~ay~~ 264 (334)
+.+..-|.+++++. |+... ..++|.+|..+|+|++|+..|+++|++ -|++++.+..++|+|.+|..
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 394 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMG 394 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 34555666766643 33322 239999999999999999999999966 46676667899999999999
Q ss_pred CCChHHHHHHHHHHHHc
Q 019871 265 LNQVKAGLSALEDALLA 281 (334)
Q Consensus 265 lG~~eeAl~~lekAIel 281 (334)
+|++++|+..|++|+++
T Consensus 395 qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 395 LENKAAGEKALKKAIAI 411 (433)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999999999886
No 193
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.98 E-value=8.8e-05 Score=72.36 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=34.1
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHHHHHHHHHHHHcC
Q 019871 218 DLREGLQLYR----TGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSALEDALLAG 282 (334)
Q Consensus 218 ~~nlG~al~~----~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~eeAl~~lekAIelg 282 (334)
.+++|..+.. .+++++|+..|+++++.. + +.+++++|.+|.. .+++++|+.+|++|++.+
T Consensus 150 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 150 QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--N---VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG 217 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC
Confidence 3456655555 556666666666665542 2 3456666666655 556666666666665554
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.87 E-value=5.3e-05 Score=58.29 Aligned_cols=68 Identities=10% Similarity=0.107 Sum_probs=51.9
Q ss_pred cCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 244 SKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 244 ldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
.+|++ +.+|+++|.+|..+|++++|+.+|++|++++|++...... -. ..+....+|.++++.|++.+.
T Consensus 2 ~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-lg-~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 2 EDPED---PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYH-LG-KLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp ---CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH-HH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-HH-HHHHHcCCHHHHHHHHHHHHh
Confidence 46777 6899999999999999999999999999999997763222 11 123455688888888888773
No 195
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=97.87 E-value=5.2e-06 Score=66.33 Aligned_cols=50 Identities=28% Similarity=0.421 Sum_probs=43.8
Q ss_pred ceEEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+..+|+|. .|||+++..+.+|.+||..|.+||-|++++.+.+||.|+.|-
T Consensus 5 ~~k~V~l~K~~~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VN 57 (95)
T 3gge_A 5 IEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESIN 57 (95)
T ss_dssp EEEEEEEECCSSCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEET
T ss_pred eEEEEEEEECCCCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEEC
Confidence 44677776 599999976667899999999999999999999999999983
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.81 E-value=0.00012 Score=60.14 Aligned_cols=108 Identities=10% Similarity=-0.035 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH----CCChHHHHHH
Q 019871 199 EIQMQNYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK----LNQVKAGLSA 274 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~----lG~~eeAl~~ 274 (334)
+.++.-|.++++....... +|..+...+.+++|+..|+++.+. .+ +.+++++|.+|.. .+++++|+.+
T Consensus 12 ~~A~~~~~~aa~~g~~~a~---lg~~y~~g~~~~~A~~~~~~Aa~~--g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC---LSLVSNSQINKQKLFQYLSKACEL--NS---GNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH---HHHHTCTTSCHHHHHHHHHHHHHT--TC---HHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHhhh---HHHHHHcCCCHHHHHHHHHHHHcC--CC---HHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 4456677777776644333 999999999999999999999997 33 6799999999999 8999999999
Q ss_pred HHHHHHcCCCCHHHHhcChhhHHHh---cChHHHHHHHHHHHhhhc
Q 019871 275 LEDALLAGYEDFKRVRTDPDLENLR---ASEEFDVLLKRFDESFIN 317 (334)
Q Consensus 275 lekAIelgp~~~~~i~~Dpdl~~Lr---~dp~F~~lL~~~~e~~~~ 317 (334)
|++|.+.+...... .-...-.. -...+.+++.-|++....
T Consensus 84 ~~~Aa~~g~~~a~~---~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGLNDQDGCL---ILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHTTCHHHHH---HHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHH---HHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99999986532211 11111111 034577777777776643
No 197
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.76 E-value=9.5e-05 Score=73.04 Aligned_cols=83 Identities=10% Similarity=-0.144 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhc-----cCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCcchHHHHHHHHHHHH
Q 019871 199 EIQMQNYMKKKEQK-----ERREQ----DLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSK 264 (334)
Q Consensus 199 e~q~~~y~~~iel~-----~~~~~----~~nlG~al~~~g~yeeAl~~fekALel-----dP~~~e~~~a~yNlA~ay~~ 264 (334)
+.+..-|.+.+++. ++... ..++|.++..+|+|++|+..|+++|++ -|+++..+..++|+|.+|..
T Consensus 304 ~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~ 383 (429)
T 3qwp_A 304 EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH 383 (429)
T ss_dssp HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 44556677777643 23222 239999999999999999999999966 46666667899999999999
Q ss_pred CCChHHHHHHHHHHHHc
Q 019871 265 LNQVKAGLSALEDALLA 281 (334)
Q Consensus 265 lG~~eeAl~~lekAIel 281 (334)
+|++++|+..|++|+++
T Consensus 384 ~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 384 QGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999999885
No 198
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=97.73 E-value=5.6e-05 Score=60.04 Aligned_cols=48 Identities=23% Similarity=0.473 Sum_probs=41.2
Q ss_pred EEEeec----CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~----kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..|.|. .++|+.+....+++++|..|.|+|.|+++|.+++||+|+.+-
T Consensus 14 ~~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~IN 65 (97)
T 2ejy_A 14 RLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEIN 65 (97)
T ss_dssp EEEEEEECSSSCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEET
T ss_pred EEEEEEeCCCCCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC
Confidence 345555 489999976667899999999999999999999999999983
No 199
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.69 E-value=0.00056 Score=63.26 Aligned_cols=129 Identities=9% Similarity=-0.036 Sum_probs=86.1
Q ss_pred HHHhhhhHHHHhhcccchhhhhc---hhcHHH-----HHHHhhchhhhhh--hHHHHHHHHHHHHHhhcc--------CH
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG---ELSEKE-----IIRAERNSGVISN--RVREIQMQNYMKKKEQKE--------RR 215 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~---~l~ek~-----~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~--------~~ 215 (334)
+....|.++...+++..+++... ++.... ......+.|.+.. +..+.+...|.+.+++.+ ..
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 44556777777777776665322 111110 0111233343332 223455667777766542 12
Q ss_pred HH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--cchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 216 EQ-DLREGLQLYRTGKYEVAREKFESVLGSKPTPE--ESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 216 ~~-~~nlG~al~~~g~yeeAl~~fekALeldP~~~--e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
.. ..++|.+++..|++++|+..|++++++.|... ....+++++|.++...|++++|+..+++++.+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 24899999999999999999999999988642 124689999999999999999999999999874
No 200
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.67 E-value=0.00022 Score=69.78 Aligned_cols=79 Identities=14% Similarity=0.081 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhccCHHHH-HHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-H--HHCCChHH
Q 019871 199 EIQMQNYMKKKEQKERREQD-LREGLQLYRT----GKYEVAREKFESVLGSKPTPEESSVASYNVACC-Y--SKLNQVKA 270 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~-~nlG~al~~~----g~yeeAl~~fekALeldP~~~e~~~a~yNlA~a-y--~~lG~~ee 270 (334)
+.++..|.++++..+..... +++|..+... +++++|+..|+++. |.+ +.+++++|.+ | ...+++++
T Consensus 196 ~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~---~~a~~~Lg~~~~~~~~~~d~~~ 269 (452)
T 3e4b_A 196 AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY---PASWVSLAQLLYDFPELGDVEQ 269 (452)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS---THHHHHHHHHHHHSGGGCCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC---HHHHHHHHHHHHhCCCCCCHHH
Confidence 44456666666666655554 5777777555 67777777777776 665 4677777777 4 45677777
Q ss_pred HHHHHHHHHHcCC
Q 019871 271 GLSALEDALLAGY 283 (334)
Q Consensus 271 Al~~lekAIelgp 283 (334)
|+.+|++|++.+.
T Consensus 270 A~~~~~~Aa~~g~ 282 (452)
T 3e4b_A 270 MMKYLDNGRAADQ 282 (452)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 7777777777663
No 201
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=97.66 E-value=5.4e-05 Score=58.74 Aligned_cols=51 Identities=27% Similarity=0.516 Sum_probs=43.3
Q ss_pred cceEEEeecC-----CcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIEQ-----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~k-----Plgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.++|+|.| ++|+.+.... +.+++|..|.|+|.|+++|.+++||+|+.+-
T Consensus 2 ~~~~~v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn 58 (95)
T 2vwr_A 2 MEILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAIN 58 (95)
T ss_dssp EEEEEEEEECSSTTCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred cEEEEEEEEECCCCCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEEC
Confidence 3678899986 3899996553 4589999999999999999999999999983
No 202
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.65 E-value=0.00026 Score=65.55 Aligned_cols=131 Identities=8% Similarity=-0.069 Sum_probs=86.3
Q ss_pred HHHhhhhHHHHhhcccchhhhhc---hhcHH--H--HHHHhhchhhhhhhH--HHHHHHHHHHHHhhccCH--H-----H
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTG---ELSEK--E--IIRAERNSGVISNRV--REIQMQNYMKKKEQKERR--E-----Q 217 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~---~l~ek--~--~~~a~~n~g~~~~~l--~e~q~~~y~~~iel~~~~--~-----~ 217 (334)
+....|.++...++..++++... ..... . ......+.|.+.... .+.+...+.+++++.+.. . .
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44455666666666666655321 11110 0 112233444443322 344556677776654431 1 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----CcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP-----EESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~-----~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
..++|.++...|+|++|+..|++++++.+.. +....+++++|.+|..+|++++|+.++++++++.+.
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 3489999999999999999999999876321 112568899999999999999999999999998775
No 203
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.65 E-value=0.00039 Score=66.06 Aligned_cols=85 Identities=14% Similarity=-0.042 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhhccCHHH--H-HHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC-CCh
Q 019871 198 REIQMQNYMKKKEQKERREQ--D-LREGLQLYRT-----GKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL-NQV 268 (334)
Q Consensus 198 ~e~q~~~y~~~iel~~~~~~--~-~nlG~al~~~-----g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l-G~~ 268 (334)
...+.....++++++|+... + ..+|..|++. |+.+.|..+|++||+++|+.. ..+++..|-.|+.. |++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~--id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD--PDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC--SHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHhcCCH
Confidence 44556778899999999433 4 4999999995 999999999999999999741 46889999999884 999
Q ss_pred HHHHHHHHHHHHcCCC
Q 019871 269 KAGLSALEDALLAGYE 284 (334)
Q Consensus 269 eeAl~~lekAIelgp~ 284 (334)
++|...|++|+..+|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999999887
No 204
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=97.59 E-value=6.6e-05 Score=57.82 Aligned_cols=51 Identities=27% Similarity=0.565 Sum_probs=42.7
Q ss_pred cceEEEeecC----CcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIEQ----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~k----Plgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
++.++|+|.| ++|+.+.... +.+++|..|.|+|.|+++|.+++||+|+.+-
T Consensus 3 ~~~~~v~l~k~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn 58 (92)
T 2qg1_A 3 SDTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVN 58 (92)
T ss_dssp -CEEEEEEECCTTSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEET
T ss_pred ceEEEEEEEeCCCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 4678888885 4899986543 4599999999999999999999999999984
No 205
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=97.56 E-value=7.8e-05 Score=58.15 Aligned_cols=50 Identities=30% Similarity=0.646 Sum_probs=43.3
Q ss_pred ceEEEeecC---CcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIEQ---PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~k---Plgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.++|+|.| ++|+.+....+ ++++|..|.+++.|+++|.+++||+|+.+-
T Consensus 5 ~~~~v~l~~~~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vn 59 (97)
T 1n7e_A 5 IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAIN 59 (97)
T ss_dssp CEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEET
T ss_pred eEEEEEEEeCCCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 568899885 78899966543 699999999999999999899999999984
No 206
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=97.55 E-value=0.0004 Score=54.67 Aligned_cols=67 Identities=24% Similarity=0.450 Sum_probs=46.8
Q ss_pred eEEEeec----CCcceeEeecCCC----ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 86 EYEVEIE----QPYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 86 ~~~v~l~----kPlgl~~~~~~~g----~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
..+|.|. .++|+.+.....| +++|..|.+++.|++++.+++||+|+.+- |..+ ...++..+..+++.
T Consensus 10 ~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~In---g~~v-~~~~~~~~~~~l~~ 84 (101)
T 2yt7_A 10 CREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAIN---GTSL-VGLPLAACQAAVRE 84 (101)
T ss_dssp CEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEES---SCBC-TTSCHHHHHHHHHH
T ss_pred eEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEEC-CCCCHHHHHHHHHh
Confidence 3555654 3799999764444 79999999999999977799999999983 3222 01344455555544
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.55 E-value=0.00028 Score=70.97 Aligned_cols=97 Identities=8% Similarity=-0.133 Sum_probs=69.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc-----CCCCHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA-----GYEDFK 287 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALel-----dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel-----gp~~~~ 287 (334)
.++.+..+..+|+|++|+..|+++|++ .|+++....+++|+|.+|..+|++++|+..+++||++ ||+.+.
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 345666778899999999999999976 4566555688999999999999999999999999975 676655
Q ss_pred HHhcChhhHHH-hcChHHHHHHHHHHHh
Q 019871 288 RVRTDPDLENL-RASEEFDVLLKRFDES 314 (334)
Q Consensus 288 ~i~~Dpdl~~L-r~dp~F~~lL~~~~e~ 314 (334)
.+..--.|..+ ....+|.+++.-|.++
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33222222222 2334555555554443
No 208
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=97.50 E-value=0.00017 Score=55.94 Aligned_cols=50 Identities=28% Similarity=0.611 Sum_probs=42.5
Q ss_pred ceEEEeecC---CcceeEeecC------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIEQ---PYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~k---Plgl~~~~~~------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.++|+|.| ++|+.+..+. +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 3 ~~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~in 61 (97)
T 2jil_A 3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVD 61 (97)
T ss_dssp EEEEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred eEEEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 457788875 7899997654 3589999999999999998899999999983
No 209
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=97.44 E-value=0.00016 Score=56.22 Aligned_cols=50 Identities=32% Similarity=0.499 Sum_probs=42.7
Q ss_pred ceEEEeec---CCcceeEeecCC---CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~~---g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+++.|+|. .++|+.+..+.+ ++++|..|.+++.|+++|.+++||+|+.+-
T Consensus 4 ~~~~v~l~~~~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vn 59 (98)
T 2opg_A 4 CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVN 59 (98)
T ss_dssp EEEEEEEECBTTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred CEEEEEEEECCCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEEC
Confidence 45677776 568999976655 799999999999999999899999999983
No 210
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=97.44 E-value=0.00014 Score=56.84 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=43.5
Q ss_pred hccceEEEeec----CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 82 EKYEEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 82 ~~~~~~~v~l~----kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..++.++|+|. ..+|+.+.. .+.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus 5 ~~~~~~~v~l~~~~~~glG~~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~I~~In 60 (96)
T 2qkv_A 5 NSLEKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFN 60 (96)
T ss_dssp CCCCCEEEEEECBTTBCCCEEEEE-CSSSEEEEEECTTSCHHHHHHCCTTCEEEEET
T ss_pred HHCceEEEEEEeCCCCCccEEEEe-CCCcEEEEEeCCCChHHhcCCCCCCCEEEEEC
Confidence 34577888885 368888855 45689999999999999999899999999984
No 211
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=97.44 E-value=0.00014 Score=56.12 Aligned_cols=61 Identities=20% Similarity=0.337 Sum_probs=44.8
Q ss_pred CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeecccccccccccc--chhhHHHHHHHhhh
Q 019871 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYTIRQRVG 159 (334)
Q Consensus 93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~--~~~~v~sai~~R~G 159 (334)
.++|+.+..+.+|+++|..|.++|.|++++.+++||+|+.+- ..++. .+..+...++...+
T Consensus 13 ~~lG~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~In------g~~v~~~~~~~~~~~l~~~~~ 75 (88)
T 1kwa_A 13 EPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREIN------GISVANQTVEQLQKMLREMRG 75 (88)
T ss_dssp SCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEET------TEEGGGSCHHHHHHHHHHCCE
T ss_pred CceeEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC------CEECCCCCHHHHHHHHhcCCC
Confidence 469999976556899999999999999955599999999983 23333 34455555554444
No 212
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=97.43 E-value=0.0005 Score=56.81 Aligned_cols=52 Identities=21% Similarity=0.379 Sum_probs=43.0
Q ss_pred ccceEEEeecC---CcceeEeecCC-----CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 83 KYEEYEVEIEQ---PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 83 ~~~~~~v~l~k---Plgl~~~~~~~-----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+.++|+|.| ++|+.+..+.+ .++||..|.+|+.|+++|.+++||+|+.|-
T Consensus 27 ~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vn 86 (130)
T 1i16_A 27 EATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLG 86 (130)
T ss_dssp SEEEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECS
T ss_pred CCcEEEEEEEcCCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 34667788875 89999976544 479999999999999996699999999983
No 213
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.42 E-value=0.00034 Score=57.37 Aligned_cols=53 Identities=32% Similarity=0.634 Sum_probs=45.0
Q ss_pred hccceEEEeec----CCcceeEeec-------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 82 EKYEEYEVEIE----QPYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 82 ~~~~~~~v~l~----kPlgl~~~~~-------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
...+.++|+|. .++|+.+... .+++++|..|.+++.|+++|.+++||+|+.+-
T Consensus 12 ~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn 75 (129)
T 2dmz_A 12 SLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVD 75 (129)
T ss_dssp CCEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEET
T ss_pred CCCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC
Confidence 35678999994 4789999653 34699999999999999999899999999984
No 214
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.42 E-value=0.0009 Score=65.39 Aligned_cols=93 Identities=9% Similarity=-0.049 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC----CChHHHHHHHHHHHHcCCCCHHHH
Q 019871 217 QDLREGLQLYRTG---KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKL----NQVKAGLSALEDALLAGYEDFKRV 289 (334)
Q Consensus 217 ~~~nlG~al~~~g---~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l----G~~eeAl~~lekAIelgp~~~~~i 289 (334)
..+++|.++.+.| ++++|+..|+++++..|.. +..++++|.+|... +++++|+.+|++|+ |.+....
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~---a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~ 251 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT---AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASW 251 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 6679999999999 9999999999999999987 56779999999766 79999999999998 4444321
Q ss_pred hcChhhHHH--hcChHHHHHHHHHHHhhh
Q 019871 290 RTDPDLENL--RASEEFDVLLKRFDESFI 316 (334)
Q Consensus 290 ~~Dpdl~~L--r~dp~F~~lL~~~~e~~~ 316 (334)
. .-...-+ ....++.++++-|++...
T Consensus 252 ~-~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 252 V-SLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp H-HHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 1 1111101 234567777777777663
No 215
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=97.41 E-value=0.0002 Score=57.32 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=41.7
Q ss_pred ceEEEeec----CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~----kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.++|+|. ..+|+.+.. .+.+++|..|.+||.|+++|.+++||+|+.+-
T Consensus 2 ~~~~v~L~k~~~~glG~~i~~-~~~gv~V~~V~~gspA~~aG~L~~GD~Il~In 54 (106)
T 2la8_A 2 EKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFN 54 (106)
T ss_dssp EEEEEEECCBSSSTTCCEEEE-CSSSEEEEECCTTSCHHHHTTCCTTCEEEEES
T ss_pred eEEEEEEEeCCCCccCEEEEe-CCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 46788886 468888855 56689999999999999999999999999983
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.40 E-value=0.00093 Score=66.19 Aligned_cols=100 Identities=10% Similarity=-0.056 Sum_probs=69.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhc-----CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc-----CCCCHHHHhcCh
Q 019871 224 QLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA-----GYEDFKRVRTDP 293 (334)
Q Consensus 224 al~~~g~yeeAl~~fekALel-----dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel-----gp~~~~~i~~Dp 293 (334)
.....|+|++|+..|+++|++ .|+++....++.|+|.+|..+|++++|+..+++||++ ||+.+..+..--
T Consensus 307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 334678999999999999975 5676655688999999999999999999999999875 677665332222
Q ss_pred hhHH-HhcChHHHHHHHHHHHhhhchhHHHHHHHhhc
Q 019871 294 DLEN-LRASEEFDVLLKRFDESFINENAINAIKSLFG 329 (334)
Q Consensus 294 dl~~-Lr~dp~F~~lL~~~~e~~~~~~ai~~~k~~~~ 329 (334)
.+.. +....+|.+++.-|++ |++-.+..+|
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~------Al~i~~~~lG 417 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKK------AIAIMEVAHG 417 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH------HHHHHHHHTC
T ss_pred HHHHHHHhccCHHHHHHHHHH------HHHHHHHHcC
Confidence 2222 2234455555555544 4444444444
No 217
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=97.40 E-value=6.6e-05 Score=61.49 Aligned_cols=56 Identities=27% Similarity=0.456 Sum_probs=44.3
Q ss_pred hhhhccceEEEeec----CCcceeEeecC-----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 79 EQEEKYEEYEVEIE----QPYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 79 ~~~~~~~~~~v~l~----kPlgl~~~~~~-----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+-.+.....|+|. .++|+.+..+. +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus 18 ~~~~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VN 82 (118)
T 3b76_A 18 LYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVD 82 (118)
T ss_dssp CCCEEEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEET
T ss_pred cccCCCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 44445556667775 46899987654 3479999999999999999999999999983
No 218
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.39 E-value=0.00019 Score=56.74 Aligned_cols=52 Identities=33% Similarity=0.618 Sum_probs=44.2
Q ss_pred ccceEEEeec---CCcceeEeecC--------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 83 KYEEYEVEIE---QPYGLKFAKGR--------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 83 ~~~~~~v~l~---kPlgl~~~~~~--------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+.+.|+|. .++|+.+..+. +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 5 ~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn 67 (105)
T 1wha_A 5 SSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSIN 67 (105)
T ss_dssp CCEEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEES
T ss_pred CCeeEEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC
Confidence 3477888886 67899997644 3699999999999999999999999999983
No 219
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=97.39 E-value=0.00017 Score=55.64 Aligned_cols=51 Identities=24% Similarity=0.563 Sum_probs=43.0
Q ss_pred cceEEEeecCC---cceeEeec------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIEQP---YGLKFAKG------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~kP---lgl~~~~~------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.++|+|.++ +|+.+... .+++++|..|.+++.|+++|.+++||+|+.+-
T Consensus 3 ~~~~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vn 62 (97)
T 2iwn_A 3 SETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVD 62 (97)
T ss_dssp EEEEEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEET
T ss_pred cEEEEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEEC
Confidence 46788888865 89999665 24699999999999999998899999999984
No 220
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=97.38 E-value=0.00018 Score=56.53 Aligned_cols=51 Identities=31% Similarity=0.603 Sum_probs=42.3
Q ss_pred cceEEEeec---CCcceeEeecCCC-ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIE---QPYGLKFAKGRDG-GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~---kPlgl~~~~~~~g-~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+..+|+|. .++|+.+..+.++ +++|..|.|++.|+++|.+++||+|+.+-
T Consensus 10 ~~~~~v~l~k~~~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vn 64 (104)
T 3i4w_A 10 REPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVN 64 (104)
T ss_dssp SSCEEEEEECBTTBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEET
T ss_pred CccEEEEEEeCCCccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEEC
Confidence 345667776 4789999776665 99999999999999999999999999984
No 221
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=97.36 E-value=0.00024 Score=54.48 Aligned_cols=51 Identities=27% Similarity=0.533 Sum_probs=42.9
Q ss_pred ccceEEEeecC-----CcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 83 KYEEYEVEIEQ-----PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 83 ~~~~~~v~l~k-----Plgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.+..+|+|.| .+|+.+..+. +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 4 ~~~~~~v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vn 60 (91)
T 1m5z_A 4 PVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVN 60 (91)
T ss_dssp CCEEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred CcceEEEEEEECCCCCCccEEEEeccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 34667888875 6899987654 4599999999999999999 99999999984
No 222
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=97.35 E-value=0.0002 Score=56.79 Aligned_cols=54 Identities=26% Similarity=0.537 Sum_probs=44.7
Q ss_pred hhccceEEEee--c---CCcceeEeec-------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 81 EEKYEEYEVEI--E---QPYGLKFAKG-------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 81 ~~~~~~~~v~l--~---kPlgl~~~~~-------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+...+.++|+| + .++|+.+..+ .+.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 8 ~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vn 73 (108)
T 2jre_A 8 ASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVD 73 (108)
T ss_dssp SSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEET
T ss_pred ccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC
Confidence 34567899999 4 4589999654 34599999999999999999999999999983
No 223
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=97.34 E-value=0.00024 Score=57.11 Aligned_cols=60 Identities=25% Similarity=0.529 Sum_probs=43.3
Q ss_pred CCCchhhhccceEEEeecC---CcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 75 SGSEEQEEKYEEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 75 ~~~~~~~~~~~~~~v~l~k---Plgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
++-..+-..-+.++|+|.| ++|+.+..+. +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 14 d~~t~~~~~~~~~~v~l~~~~~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vn 78 (112)
T 2r4h_A 14 GTENLYFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEIN 78 (112)
T ss_dssp ---------CCEEEEEEECBTTBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEET
T ss_pred CCcccccCCCceEEEEEEcCCCccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence 3333455556778888874 6888886543 4689999999999999999899999999983
No 224
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.31 E-value=0.0014 Score=73.81 Aligned_cols=81 Identities=15% Similarity=0.033 Sum_probs=45.3
Q ss_pred HHHHHHhhccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------CcchHHHHHHHHH
Q 019871 204 NYMKKKEQKERREQDLREGLQLYRTGKYEVAREKFESVLGSKPTP----------------------EESSVASYNVACC 261 (334)
Q Consensus 204 ~y~~~iel~~~~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~----------------------~e~~~a~yNlA~a 261 (334)
.|..++........+..+|.++.++|+|++|++++.+|...++=. ...+.-+..++..
T Consensus 1210 ~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~y 1289 (1630)
T 1xi4_A 1210 MYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINY 1289 (1630)
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHH
Confidence 333333333333444566667777777777777776664332200 0012234455556
Q ss_pred HHHCCChHHHHHHHHHHHHcCCC
Q 019871 262 YSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 262 y~~lG~~eeAl~~lekAIelgp~ 284 (334)
|...|.+++||..|++||.+++.
T Consensus 1290 Ye~~G~feEAI~LlE~aL~Lera 1312 (1630)
T 1xi4_A 1290 YQDRGYFEELITMLEAALGLERA 1312 (1630)
T ss_pred HHHcCCHHHHHHHHHHHhccChh
Confidence 77777777777777777777654
No 225
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.29 E-value=0.00018 Score=57.13 Aligned_cols=53 Identities=26% Similarity=0.577 Sum_probs=44.3
Q ss_pred hccceEEEeec---CCcceeEee---c-----CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 82 EKYEEYEVEIE---QPYGLKFAK---G-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 82 ~~~~~~~v~l~---kPlgl~~~~---~-----~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+..+.+.|+|. .++|+.+.. + .+.++||..|.+++.|+++|.+++||+|+.+-
T Consensus 6 ~~~~~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn 69 (107)
T 1wf8_A 6 SGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVD 69 (107)
T ss_dssp CCEEEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEET
T ss_pred CCceEEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC
Confidence 35677888885 588999966 1 34589999999999999999999999999983
No 226
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=97.28 E-value=0.00011 Score=57.71 Aligned_cols=49 Identities=24% Similarity=0.517 Sum_probs=38.4
Q ss_pred eEEEeecC----CcceeEeecCC-----------CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIEQ----PYGLKFAKGRD-----------GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~k----Plgl~~~~~~~-----------g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.|.|.|.| .+|+.+....+ .+++|..|.++|.|+++|.+++||+|+.+-
T Consensus 5 p~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~in 68 (103)
T 2fcf_A 5 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVD 68 (103)
T ss_dssp CEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEET
T ss_pred CEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEEC
Confidence 37777764 47888854322 589999999999999999899999999983
No 227
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=97.26 E-value=0.00035 Score=55.81 Aligned_cols=50 Identities=28% Similarity=0.524 Sum_probs=43.4
Q ss_pred ceEEEeec----CCcceeEeecC----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE----QPYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~----kPlgl~~~~~~----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.++|+|. .++|+.+..+. +.++||..|.+++.|+++|.+++||+|+.+-
T Consensus 5 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vn 62 (108)
T 3cbz_A 5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVN 62 (108)
T ss_dssp CEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred eEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEEC
Confidence 67888887 46999996652 5699999999999999999999999999983
No 228
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.24 E-value=0.00036 Score=55.60 Aligned_cols=50 Identities=34% Similarity=0.613 Sum_probs=42.3
Q ss_pred ceEEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+..+|+|. .++|+.+..+.+.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 15 ~~~~v~l~~~~~~lG~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vn 67 (111)
T 2dlu_A 15 HVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIG 67 (111)
T ss_dssp EEEEEEEECCSSCCCEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEES
T ss_pred ceEEEEEEeCCCccCEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 34556665 579999976666899999999999999999899999999983
No 229
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.22 E-value=0.00031 Score=55.70 Aligned_cols=51 Identities=37% Similarity=0.755 Sum_probs=43.0
Q ss_pred cceEEEeecC---CcceeEe-----ec-----CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIEQ---PYGLKFA-----KG-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~k---Plgl~~~-----~~-----~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.++|+|.| ++|+.+. .+ .+++++|..|.++|.|+++|.+++||+|+.+-
T Consensus 8 ~~~~~v~l~k~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn 71 (108)
T 1q7x_A 8 GDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 71 (108)
T ss_dssp SSEEEEEEESSSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEET
T ss_pred CcEEEEEEEECCCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence 4678888874 8999996 21 24689999999999999999999999999983
No 230
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=97.21 E-value=0.0004 Score=53.73 Aligned_cols=50 Identities=36% Similarity=0.747 Sum_probs=42.0
Q ss_pred ceEEEeec---CCcceeEeecC-----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~-----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.|+|.|. .++|+.+..+. +++++|..|.+++.|+++|.+++||+|+.+-
T Consensus 5 ~~~~v~l~k~~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vn 62 (96)
T 1d5g_A 5 DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 62 (96)
T ss_dssp CEEEEEEECSSSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEET
T ss_pred CEEEEEEEeCCCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEEC
Confidence 45777775 68899996542 3599999999999999999899999999983
No 231
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0025 Score=59.67 Aligned_cols=130 Identities=13% Similarity=0.054 Sum_probs=85.8
Q ss_pred HHHhhhhHHHHhhcccchhhhhchhcHH------H-HH-HHhhchhhhhh--hHHHHHHHHHHHHHhhcc------CHH-
Q 019871 154 IRQRVGPLLMKMQKRYGKMEQTGELSEK------E-II-RAERNSGVISN--RVREIQMQNYMKKKEQKE------RRE- 216 (334)
Q Consensus 154 i~~R~G~V~lkLek~~~aie~~~~l~ek------~-~~-~a~~n~g~~~~--~l~e~q~~~y~~~iel~~------~~~- 216 (334)
+...+|.+|...+++.++++......+. . .. ....+.|.+.. +..+.++..|.+.++... ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3467899999999998888743322211 0 00 01112232221 123445555555554322 122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPT---PEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~---~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp 283 (334)
...++|..++..|+|++|+..+++++..-.. ......++.+++.+|..+|++++|...|++|+...+
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 2349999999999999999999999865322 122357899999999999999999999999988743
No 232
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=97.20 E-value=0.00044 Score=54.17 Aligned_cols=51 Identities=35% Similarity=0.581 Sum_probs=42.5
Q ss_pred cceEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.++|+|. .++|+.+..+. +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus 3 ~~~~~v~l~k~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn 63 (102)
T 2i1n_A 3 FKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVN 63 (102)
T ss_dssp EEEEEEEEECBTTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred ceEEEEEEEECCCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 355677776 47899997643 3599999999999999999999999999983
No 233
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.20 E-value=0.0027 Score=62.57 Aligned_cols=105 Identities=12% Similarity=0.006 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc-----CCCCHHH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGS-----KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA-----GYEDFKR 288 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALel-----dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel-----gp~~~~~ 288 (334)
++.-..+..+|+|++|+..|++++++ .|+++....++.|+|.+|..+|++++|+..++++|++ ||+.+..
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 34455677899999999999999976 3555555678999999999999999999999999875 6666553
Q ss_pred HhcChhhHHH-hcChHHHHHHHHHHHhhhchhHHHHHHHhhc
Q 019871 289 VRTDPDLENL-RASEEFDVLLKRFDESFINENAINAIKSLFG 329 (334)
Q Consensus 289 i~~Dpdl~~L-r~dp~F~~lL~~~~e~~~~~~ai~~~k~~~~ 329 (334)
+..--.+..+ ....++.+++.-|. +|++-++..+|
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~------~Al~i~~~~lG 406 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLR------LAFDIMRVTHG 406 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH------HHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH------HHHHHHHHhcC
Confidence 3322222222 22344555554443 44444555554
No 234
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.20 E-value=0.0041 Score=59.26 Aligned_cols=30 Identities=7% Similarity=-0.232 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 253 VASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 253 ~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
.++.|+.++...+|+ +|.+.++++.+..|+
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 444444444444444 444444444444444
No 235
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.19 E-value=0.00064 Score=53.58 Aligned_cols=52 Identities=27% Similarity=0.533 Sum_probs=42.8
Q ss_pred ccceEEEeec---CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 83 KYEEYEVEIE---QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 83 ~~~~~~v~l~---kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++.++|+|. .++|+.+..+. +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 7 ~~~~~~v~l~~~~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~in 63 (103)
T 1uep_A 7 GYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVD 63 (103)
T ss_dssp SEEEECCEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEET
T ss_pred CceEEEEEEEeCCCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEEC
Confidence 4566777777 46888886542 4589999999999999999999999999983
No 236
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.19 E-value=0.0023 Score=49.67 Aligned_cols=52 Identities=10% Similarity=0.027 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 019871 199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEE 250 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e 250 (334)
..+.+.+.++++++|+...+. .+|..+++.|+|++|+..|+++++.+|.++.
T Consensus 26 ~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 26 DEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 445577888999999987764 9999999999999999999999999999643
No 237
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.18 E-value=0.00023 Score=57.14 Aligned_cols=50 Identities=28% Similarity=0.517 Sum_probs=42.3
Q ss_pred ceEEEeec---CCcceeEeecCC---CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~~---g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.+.|+|. .++|+.+..+.+ ++++|..|.+++.|+++|.+++||+|+.+-
T Consensus 17 ~~~~v~l~~~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn 72 (116)
T 2dm8_A 17 QEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVN 72 (116)
T ss_dssp SCEEEEEECCSSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEET
T ss_pred CEEEEEEEECCCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEEC
Confidence 45677775 678999976554 699999999999999999899999999983
No 238
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.18 E-value=0.00045 Score=53.50 Aligned_cols=47 Identities=28% Similarity=0.468 Sum_probs=39.9
Q ss_pred EEEeec----CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~----kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..|.|. .++|+.+.. .+++++|..|.+++.|++++.+++||+|+.+-
T Consensus 8 r~v~l~k~~~~~lG~~i~~-~~~~v~V~~V~~~spA~~ag~L~~GD~I~~in 58 (91)
T 2e7k_A 8 RMVGIRKTAGEHLGVTFRV-EGGELVIARILHGGMVAQQGLLHVGDIIKEVN 58 (91)
T ss_dssp CBCCBCCCTTCCCCEEEEE-SSSSEEEEEECSSSHHHHHCCCCTTCEEEEET
T ss_pred EEEEEEECCCCcEeEEEEe-cCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 456665 379999965 56799999999999999988899999999983
No 239
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=97.18 E-value=0.00037 Score=55.12 Aligned_cols=52 Identities=27% Similarity=0.513 Sum_probs=41.9
Q ss_pred ccceEEEeec--CCcceeEeec-----CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 83 KYEEYEVEIE--QPYGLKFAKG-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 83 ~~~~~~v~l~--kPlgl~~~~~-----~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+.++|+|. .++|+.+..+ .+.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus 9 ~~~~~~v~l~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~in 67 (106)
T 3axa_A 9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVD 67 (106)
T ss_dssp -CCEEEEEEECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEET
T ss_pred CceEEEEEECCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 4466778775 5678888542 34589999999999999999999999999983
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.17 E-value=0.003 Score=52.71 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=68.8
Q ss_pred HHHHHHHhhc-cCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-CCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 203 QNYMKKKEQK-ERREQDLREGLQLYRTGKYEV---AREKFESVLGSK-PTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 203 ~~y~~~iel~-~~~~~~~nlG~al~~~g~yee---Al~~fekALeld-P~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
..|.+..... +.....|+.+.++.+..+-.+ +|..++..+..+ |.. ....+|.+|..+.++|+|++|+.+++.
T Consensus 22 ~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~--~Rd~lY~LAvg~yklg~Y~~A~~~~~~ 99 (126)
T 1nzn_A 22 KKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE--QRDYVFYLAVGNYRLKEYEKALKYVRG 99 (126)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4455544433 566777899999999888887 999999999877 532 257999999999999999999999999
Q ss_pred HHHcCCCCHH
Q 019871 278 ALLAGYEDFK 287 (334)
Q Consensus 278 AIelgp~~~~ 287 (334)
.|+..|++..
T Consensus 100 lL~~eP~n~Q 109 (126)
T 1nzn_A 100 LLQTEPQNNQ 109 (126)
T ss_dssp HHHHCTTCHH
T ss_pred HHHhCCCCHH
Confidence 9999999865
No 241
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=97.17 E-value=0.00078 Score=53.64 Aligned_cols=49 Identities=24% Similarity=0.404 Sum_probs=40.8
Q ss_pred eEEEeec----CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIE----QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~----kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|+|. .++|+.+.... .++++|..|.+++.|+++|.|++||+|+.+-
T Consensus 2 ~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~in 55 (112)
T 1qau_A 2 VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN 55 (112)
T ss_dssp EEEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEET
T ss_pred EEEEEEEcCCCCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEEC
Confidence 5778884 36899997654 3499999999999999999559999999984
No 242
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=97.17 E-value=0.00038 Score=56.02 Aligned_cols=51 Identities=24% Similarity=0.410 Sum_probs=42.7
Q ss_pred cceEEEeecCC----cceeEeecC-----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIEQP----YGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~kP----lgl~~~~~~-----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
...+.|+|.|+ +|+.+..+. +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus 19 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~in 78 (117)
T 2o2t_A 19 RHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAIN 78 (117)
T ss_dssp SCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEET
T ss_pred CeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 35688888875 788886543 3589999999999999999999999999983
No 243
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.16 E-value=0.0025 Score=60.72 Aligned_cols=157 Identities=11% Similarity=-0.014 Sum_probs=92.1
Q ss_pred HhhhhHHHHhhcccchhhhhchh-------cHHHH----HHHhhchhhhhhhHHHHHHHHHHHHHhhcc-----CHHHHH
Q 019871 156 QRVGPLLMKMQKRYGKMEQTGEL-------SEKEI----IRAERNSGVISNRVREIQMQNYMKKKEQKE-----RREQDL 219 (334)
Q Consensus 156 ~R~G~V~lkLek~~~aie~~~~l-------~ek~~----~~a~~n~g~~~~~l~e~q~~~y~~~iel~~-----~~~~~~ 219 (334)
...|.++...++..++++.+... ..-+. +......|. ...+..-+.+..+.+| ++....
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r-----~d~A~k~l~~~~~~~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN-----VSTASTIFDNYTNAIEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHhcCccccccchHHHH
Confidence 46777888888888887632222 11111 122222222 2333333333334455 355556
Q ss_pred HHHHH--HHHcC--CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc----------CCCC
Q 019871 220 REGLQ--LYRTG--KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA----------GYED 285 (334)
Q Consensus 220 nlG~a--l~~~g--~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel----------gp~~ 285 (334)
+++.+ .+..| ++++|+..|+++.+..|++. ....++| |+..+|++++|...|++.++. +|++
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~-~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWK-TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH-HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc-cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 66655 55556 99999999999999888721 0356777 899999999999999988776 4766
Q ss_pred HHHHhcChhhHHHhcChHHHHHHHHHHHhhhchhHHH
Q 019871 286 FKRVRTDPDLENLRASEEFDVLLKRFDESFINENAIN 322 (334)
Q Consensus 286 ~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~~~ai~ 322 (334)
...+..--.+.....+ +-.+++++..+..-++-+|.
T Consensus 255 ~~~LaN~i~l~~~lgk-~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 255 PTFLANQITLALMQGL-DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHHHHHHTTC-TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhCh-HHHHHHHHHHHhCCCChHHH
Confidence 6544222222222222 44555555555544444443
No 244
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.14 E-value=0.00038 Score=56.40 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=41.2
Q ss_pred ceEEEeecC----CcceeEeecCC---CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIEQ----PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~k----Plgl~~~~~~~---g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+.|+|.| ++|+.+..+.+ ++++|..|.+++.|+++|.+++||+|+.+-
T Consensus 15 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~In 71 (117)
T 1v62_A 15 GPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSID 71 (117)
T ss_dssp SSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEET
T ss_pred CcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 346677764 68999976533 569999999999999999999999999983
No 245
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=97.14 E-value=0.0004 Score=52.85 Aligned_cols=49 Identities=27% Similarity=0.601 Sum_probs=40.3
Q ss_pred ceEEEeec--CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE--QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~--kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.+.|+|. .|+|+.+..+. +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 3 ~~~~v~l~~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~in 55 (88)
T 2uzc_A 3 SNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQAN-VRIGDVVLSID 55 (88)
T ss_dssp CEEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred cEEEEEEcCCCcccEEEECcCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence 34666666 77888886543 3479999999999999999 99999999983
No 246
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=97.14 E-value=0.00039 Score=53.16 Aligned_cols=49 Identities=33% Similarity=0.698 Sum_probs=40.2
Q ss_pred ceEEEeec--CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE--QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~--kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+++.|+++ .|+|+.+..+. +.+++|..|.|++.|+++| +++||+|+.+-
T Consensus 3 ~~~~v~~~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~in 55 (89)
T 2q3g_A 3 DSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSID 55 (89)
T ss_dssp EEEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred cEEEEEEcCCCcccEEEECcCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 45777777 67788885543 3479999999999999999 99999999983
No 247
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=97.13 E-value=0.00038 Score=55.66 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=42.8
Q ss_pred cceEEEeec---CCcceeEee---c-----CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIE---QPYGLKFAK---G-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~---kPlgl~~~~---~-----~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.+.|+|. .++|+.+.. + .+.+++|..|.|+|.|+++|.+++||+|+.+-
T Consensus 3 ~~~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vn 64 (113)
T 2g5m_B 3 MELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD 64 (113)
T ss_dssp CEEEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEET
T ss_pred eEEEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 356788886 678999866 2 34599999999999999999999999999983
No 248
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.13 E-value=0.0012 Score=52.58 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=40.4
Q ss_pred eEEEeec---CCcceeEeec------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIE---QPYGLKFAKG------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~---kPlgl~~~~~------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+|+|. +++|+.+..+ .+.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 16 ~~~v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vn 73 (108)
T 2d92_A 16 VKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVN 73 (108)
T ss_dssp CEEEEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEES
T ss_pred eEEEEEEECCCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 3556665 6789998654 24589999999999999999999999999983
No 249
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=97.12 E-value=0.0004 Score=52.85 Aligned_cols=47 Identities=26% Similarity=0.574 Sum_probs=39.0
Q ss_pred EEEeec--CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~--kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.|++. .|+|+.+..+.+ .+++|..|.|++.|+++| +++||+|+.+-
T Consensus 4 ~~v~~~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in 54 (87)
T 2pa1_A 4 LTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDAD-LRPGDIIVAIN 54 (87)
T ss_dssp EEEEECSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTT-CCTTCEEEEET
T ss_pred EEEEECCCCccCEEEecccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence 455555 688999976544 589999999999999998 99999999983
No 250
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.11 E-value=0.00056 Score=54.23 Aligned_cols=51 Identities=22% Similarity=0.475 Sum_probs=42.7
Q ss_pred ccceEEEeec---CCcceeEeecC----------CCceEEEeeCCCCccccccccccCcEeeee
Q 019871 83 KYEEYEVEIE---QPYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 83 ~~~~~~v~l~---kPlgl~~~~~~----------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
..+.++|+|. .++|+.+..+. +.++||..|.+++.|++++.+++||+|+.+
T Consensus 6 ~~~~~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~v 69 (107)
T 1uhp_A 6 SGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV 69 (107)
T ss_dssp SSEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEE
T ss_pred CcEEEEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEE
Confidence 4477889998 46999996533 469999999999999999449999999998
No 251
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.11 E-value=0.00056 Score=55.87 Aligned_cols=57 Identities=25% Similarity=0.419 Sum_probs=43.4
Q ss_pred CcceeEeecCC----CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 94 PYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 94 Plgl~~~~~~~----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
.+|+.+....+ ++++|..|.+++.|+++|.|++||+|+.+- | .++.++..+..++..
T Consensus 33 ~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~in---g---~~v~~~~~~~~~l~~ 93 (124)
T 1wh1_A 33 KLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQIN---G---IEVQNREEAVALLTS 93 (124)
T ss_dssp CCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEES---S---CBCCSHHHHHHHHTC
T ss_pred cccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC---C---EECCCHHHHHHHHHh
Confidence 58999976543 799999999999999998899999999983 2 233444455555544
No 252
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=97.11 E-value=0.00059 Score=54.29 Aligned_cols=51 Identities=18% Similarity=0.447 Sum_probs=42.9
Q ss_pred cceEEEeec---CCcceeEeecCC-----CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIE---QPYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~---kPlgl~~~~~~~-----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.+.+++. .++|+.+....+ ++++|..|.+++.|+++|.+++||+|+.+-
T Consensus 10 ~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~in 68 (111)
T 2koj_A 10 GKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVN 68 (111)
T ss_dssp CEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEET
T ss_pred CcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence 466777776 578999976543 689999999999999998899999999984
No 253
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=97.11 E-value=0.00064 Score=52.56 Aligned_cols=50 Identities=34% Similarity=0.632 Sum_probs=41.3
Q ss_pred cceEEEeecC---CcceeEeec--------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~k---Plgl~~~~~--------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
++++.+++.+ .+|+.+..+ .+++++|..|.+++.|+++| +++||+|+.+-
T Consensus 2 ~~~~~v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in 62 (97)
T 2w4f_A 2 MEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVN 62 (97)
T ss_dssp -CEEEEEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred ceEEEEEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence 4678888874 578888653 34799999999999999999 99999999984
No 254
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=97.10 E-value=0.00059 Score=52.13 Aligned_cols=50 Identities=26% Similarity=0.516 Sum_probs=39.9
Q ss_pred ceEEEeec---CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
++.+|+|. .++|+.+..+. +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus 2 ~~~~v~l~~~~~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~in 56 (90)
T 2q9v_A 2 MEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVD 56 (90)
T ss_dssp EEEEEEEECBTTBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred CcEEEEEEECCCccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence 34566666 46788886442 2469999999999999999999999999983
No 255
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=97.09 E-value=0.00042 Score=55.90 Aligned_cols=53 Identities=30% Similarity=0.549 Sum_probs=43.9
Q ss_pred hccceEEEeecCC---cceeEeecCC-CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 82 EKYEEYEVEIEQP---YGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 82 ~~~~~~~v~l~kP---lgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
...+..+|+|.|+ +|+.+....+ .+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 11 ~~~~~~~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn 67 (119)
T 1tp5_A 11 IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVN 67 (119)
T ss_dssp CCCSCEEEEEECTTSCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEET
T ss_pred CCCccEEEEEEECCCCccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 3446678888754 8899866543 599999999999999998899999999984
No 256
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=97.08 E-value=0.00022 Score=62.16 Aligned_cols=52 Identities=27% Similarity=0.582 Sum_probs=43.7
Q ss_pred ccceEEEeec---CCcceeEee---c-----CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 83 KYEEYEVEIE---QPYGLKFAK---G-----RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 83 ~~~~~~v~l~---kPlgl~~~~---~-----~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+.++|+|. .++|+.+.. + .++++||..|.+||.|+++|.+++||+|+.|-
T Consensus 78 ~~~~~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VN 140 (170)
T 3egg_C 78 RLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD 140 (170)
T ss_dssp TSEEEEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred CceEEEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence 4466888887 589999866 2 24589999999999999999999999999984
No 257
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=97.08 E-value=0.00065 Score=53.67 Aligned_cols=49 Identities=37% Similarity=0.651 Sum_probs=40.6
Q ss_pred eEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|+|. .++|+.+..+. +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus 4 ~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn 62 (105)
T 2awx_A 4 IMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 62 (105)
T ss_dssp EEEEEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred EEEEEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 4566765 58899996543 2589999999999999999999999999983
No 258
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.07 E-value=0.001 Score=52.51 Aligned_cols=49 Identities=29% Similarity=0.539 Sum_probs=40.8
Q ss_pred ceEEEeecC----CcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~k----Plgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
...+|+|.| ++|+.+..+.+ .+++|..|.+++.|+++| +++||+|+.+-
T Consensus 15 ~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in 69 (104)
T 1wi2_A 15 LPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVN 69 (104)
T ss_dssp CCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred CCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence 446777774 58899976543 489999999999999999 99999999983
No 259
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=97.07 E-value=0.0008 Score=52.58 Aligned_cols=50 Identities=32% Similarity=0.600 Sum_probs=41.9
Q ss_pred ceEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
...+|+|. .++|+.+..+. +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 7 ~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn 66 (101)
T 2jik_A 7 TEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN 66 (101)
T ss_dssp EEEEEEEECCTTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred ccEEEEEEeCCCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 45677776 57889997653 3699999999999999999899999999983
No 260
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=97.07 E-value=0.00019 Score=55.03 Aligned_cols=47 Identities=23% Similarity=0.608 Sum_probs=38.8
Q ss_pred EEEeec---CCcceeEeecCC-CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE---QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~---kPlgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..|+|. .++|+.+..+.+ .+++|..|.+++.|+++| +++||+|+.+-
T Consensus 6 r~v~l~k~~~g~G~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~in 56 (90)
T 2he4_A 6 RLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVN 56 (90)
T ss_dssp EEEEEECBTTBCCEEEEECSSSSSEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred EEEEEEECCCCccEEEEccCCCCCEEEEEECCCChHHHCC-CCCCCEEEEEC
Confidence 456665 468888866543 589999999999999999 99999999983
No 261
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.07 E-value=0.00059 Score=55.65 Aligned_cols=51 Identities=18% Similarity=0.376 Sum_probs=42.4
Q ss_pred cceEEEeecC---CcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIEQ---PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~k---Plgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.++|+|.| .+|+.+..+. +++++|..|.+++.|+++|.+++||+|+.+-
T Consensus 18 ~~~~~v~l~~~~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vn 73 (123)
T 1ueq_A 18 GTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYIN 73 (123)
T ss_dssp SEEEEEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEET
T ss_pred CcEEEEEEEeCCCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 3667888874 5888886543 4579999999999999999999999999983
No 262
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=97.07 E-value=0.00057 Score=55.05 Aligned_cols=46 Identities=28% Similarity=0.720 Sum_probs=39.8
Q ss_pred EEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 88 EVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 88 ~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.|+|. .++|+.+....+++++|..|.+++.|+++| +++||+|+.+-
T Consensus 22 ~v~l~~~~~~lG~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~vn 70 (117)
T 1uit_A 22 HVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFN 70 (117)
T ss_dssp EEEEECSSCCCCEEEEECTTSCEEEEEECTTSHHHHHT-CCTTCEECEET
T ss_pred EEEEEeCCCCccEEEEccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 45555 489999977777899999999999999999 99999999983
No 263
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=97.05 E-value=0.00046 Score=52.86 Aligned_cols=50 Identities=28% Similarity=0.424 Sum_probs=41.0
Q ss_pred ceEEEeecC----CcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~k----Plgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.++|+|.| ++|+.+..+. +.+++|..|.++|.|++++.+++||+|+.+-
T Consensus 4 ~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~in 59 (90)
T 1qav_A 4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVN 59 (90)
T ss_dssp SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEET
T ss_pred ccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEEC
Confidence 457788775 7899986553 3589999999999999994499999999983
No 264
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=97.05 E-value=0.00047 Score=55.42 Aligned_cols=48 Identities=33% Similarity=0.527 Sum_probs=39.6
Q ss_pred eEEEeec----CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~----kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
...|+|. .++|+.+.. .+++++|..|.+++.|+++|.+++||+|+.+-
T Consensus 26 ~~~v~l~k~~~~~lG~~i~~-~~~gv~V~~V~~~spA~~aGll~~GD~I~~vn 77 (113)
T 1va8_A 26 VKIVRIEKARDIPLGATVRN-EMDSVIISRIVKGGAAEKSGLLHEGDEVLEIN 77 (113)
T ss_dssp CEEEEEEECTTCCCCEEEEE-CSSSEEEEEECTTSHHHHHTCCCTTCEEEEET
T ss_pred eEEEEEEeCCCCceeEEEEe-CCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC
Confidence 3456666 388988854 46799999999999999999559999999983
No 265
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=97.05 E-value=0.00081 Score=51.44 Aligned_cols=47 Identities=28% Similarity=0.583 Sum_probs=39.0
Q ss_pred EEEeec---CCcceeEeecCC-CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE---QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~---kPlgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..|+|. .++|+.+..+.+ .+++|..|.+++.|+++| +++||+|+.+-
T Consensus 5 r~v~l~r~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in 55 (91)
T 1g9o_A 5 RLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVN 55 (91)
T ss_dssp EEEEEECBTTBCCEEEEECTTCSSEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred EEEEEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEEC
Confidence 345555 678899866543 599999999999999999 99999999983
No 266
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=0.00099 Score=53.92 Aligned_cols=55 Identities=29% Similarity=0.517 Sum_probs=44.9
Q ss_pred hhhccceEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 80 QEEKYEEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 80 ~~~~~~~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+......++|+|. .++|+.+..+. +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 12 ~~~~~~~~~v~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vn 76 (120)
T 2eno_A 12 VDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN 76 (120)
T ss_dssp CCEEEEEEEEEEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEET
T ss_pred CCCCCceEEEEEEECCCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence 3445567788887 46889886543 4599999999999999999999999999983
No 267
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=97.04 E-value=0.0011 Score=51.08 Aligned_cols=42 Identities=31% Similarity=0.660 Sum_probs=37.1
Q ss_pred CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 93 QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|+.+..+. +++++|..|.++|.|+++|.+++||+|+.+-
T Consensus 15 ~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~in 57 (93)
T 3o46_A 15 EPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVN 57 (93)
T ss_dssp SCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEET
T ss_pred CCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 68999996642 5699999999999999999999999999983
No 268
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.03 E-value=0.00048 Score=54.18 Aligned_cols=51 Identities=29% Similarity=0.531 Sum_probs=42.3
Q ss_pred cceEEEeec---CCcceeEeecC----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIE---QPYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~---kPlgl~~~~~~----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.++|+|. .++|+.+..+. +++++|..|.+++.|+++|.+++||+|+.+-
T Consensus 10 ~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vn 67 (104)
T 2djt_A 10 SGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHIN 67 (104)
T ss_dssp CCCEEEEEECCSSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEET
T ss_pred CceEEEEEEeCCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 366888887 56778885532 5689999999999999999899999999983
No 269
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=97.03 E-value=0.0013 Score=54.16 Aligned_cols=50 Identities=26% Similarity=0.509 Sum_probs=41.6
Q ss_pred ceEEEeec----CCcceeEeecC------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE----QPYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~----kPlgl~~~~~~------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..++|.|. .++|+.+..+. +.++||..|.++|.|+++|.+++||+|+.|-
T Consensus 25 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vn 84 (127)
T 1wg6_A 25 LTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVN 84 (127)
T ss_dssp EEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEET
T ss_pred eEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 45677775 36999996654 2489999999999999999999999999983
No 270
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=97.03 E-value=0.00053 Score=52.60 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=39.2
Q ss_pred EEEeec--CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~--kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.|++. .|+|+.+..+.+ .+++|..|.|++.|+++| +++||+|+.+-
T Consensus 5 ~~v~~~~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in 55 (91)
T 2pkt_A 5 QQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAID 55 (91)
T ss_dssp EEEEEESSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred EEEEECCCCCCCEEEEccCCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 455555 688999866543 589999999999999999 99999999984
No 271
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=97.03 E-value=0.0019 Score=53.53 Aligned_cols=47 Identities=19% Similarity=0.478 Sum_probs=38.5
Q ss_pred EEEeecC----CcceeEeecCCC--------------ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIEQ----PYGLKFAKGRDG--------------GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~k----Plgl~~~~~~~g--------------~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..|+|.| ++|+.+..+.+. +++|..|.+|+.|+++| +++||+|+.+-
T Consensus 29 r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vn 93 (132)
T 3l4f_D 29 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVN 93 (132)
T ss_dssp CEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEES
T ss_pred EEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 4556553 688888666542 69999999999999999 99999999983
No 272
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=97.02 E-value=0.00034 Score=57.48 Aligned_cols=51 Identities=22% Similarity=0.442 Sum_probs=39.7
Q ss_pred cceEEEeec----CCcceeEeec-----------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIE----QPYGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~----kPlgl~~~~~-----------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
...++|++. ..+|+.+... .+.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus 23 ~~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vn 88 (123)
T 2iwq_A 23 MQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVD 88 (123)
T ss_dssp CCCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEET
T ss_pred CCCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence 344566665 3578887432 23589999999999999999999999999984
No 273
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=97.02 E-value=0.0013 Score=52.81 Aligned_cols=50 Identities=30% Similarity=0.487 Sum_probs=40.9
Q ss_pred ceEEEeecC----CcceeEeecCC-----------CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIEQ----PYGLKFAKGRD-----------GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~k----Plgl~~~~~~~-----------g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+.|+|.| ++|+.+.-+.+ .+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 15 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vn 79 (117)
T 2ehr_A 15 PPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVS 79 (117)
T ss_dssp CCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEES
T ss_pred CCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEEC
Confidence 447777763 58888855432 589999999999999999899999999983
No 274
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=97.02 E-value=0.00021 Score=58.23 Aligned_cols=50 Identities=22% Similarity=0.463 Sum_probs=41.7
Q ss_pred ceEEEeec---CCcceeEeecC-----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~-----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+..+|+|. .++|+.+..+. +.+++|..|.|+|.|+++|.+++||+|+.+-
T Consensus 25 ~~~~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vn 82 (117)
T 2fne_A 25 QCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVN 82 (117)
T ss_dssp EEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred ccEEEEEEeCCCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence 45678887 57889986542 3489999999999999999999999999983
No 275
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=97.01 E-value=0.00042 Score=52.29 Aligned_cols=48 Identities=29% Similarity=0.588 Sum_probs=38.5
Q ss_pred eEEEeec--CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIE--QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~--kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.|+|. .|+|+.+..+. +.+++|..|.|++.|+++| +++||+|+.+-
T Consensus 2 ~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~vn 53 (85)
T 1rgw_A 2 AYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAID 53 (85)
T ss_dssp EEEEEECCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSS-CCCCSBEEEET
T ss_pred cEEEEEeCCCccCEEEEeccCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 4677777 56788875432 3379999999999999998 99999999983
No 276
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=96.98 E-value=0.0014 Score=51.70 Aligned_cols=51 Identities=25% Similarity=0.479 Sum_probs=41.2
Q ss_pred hccceEEEeecC----CcceeEeecCC--------CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 82 EKYEEYEVEIEQ----PYGLKFAKGRD--------GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 82 ~~~~~~~v~l~k----Plgl~~~~~~~--------g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.++.++|+|.| ++|+.+..+.+ .+++|..|.+++.|+ +| +++||+|+.+-
T Consensus 4 ~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vn 66 (107)
T 2h2b_A 4 MIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVN 66 (107)
T ss_dssp CCEEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEET
T ss_pred ccceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEEC
Confidence 345678888884 38888865433 499999999999999 76 99999999983
No 277
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.97 E-value=0.001 Score=52.85 Aligned_cols=50 Identities=30% Similarity=0.622 Sum_probs=42.2
Q ss_pred ceEEEeec---CCcceeEeecC-----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~-----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.+.|+|. .++|+.+..+. +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 8 ~~~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vn 65 (110)
T 1um1_A 8 YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVN 65 (110)
T ss_dssp CEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEES
T ss_pred cEEEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence 66888886 46889986642 3589999999999999999999999999983
No 278
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=96.97 E-value=0.00097 Score=51.23 Aligned_cols=50 Identities=38% Similarity=0.638 Sum_probs=40.6
Q ss_pred ceEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.++|+|. .++|+.+..+. +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 3 ~~~~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vn 62 (94)
T 2fe5_A 3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVN 62 (94)
T ss_dssp CEEEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred EEEEEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence 34567775 57899886432 3489999999999999999899999999983
No 279
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=96.95 E-value=0.0011 Score=50.14 Aligned_cols=48 Identities=17% Similarity=0.379 Sum_probs=38.5
Q ss_pred EEEeec---CCcceeEeecCCC--ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE---QPYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~---kPlgl~~~~~~~g--~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
++|+|. ..+|+.+..+.++ +++|..|.|++.|+++|.+++||+|+.+-
T Consensus 2 ~~v~l~k~~~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vn 54 (85)
T 2i04_A 2 IHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVN 54 (85)
T ss_dssp EEEEEECBTTBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred EEEEEEECCCCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence 456665 4578888554333 79999999999999999899999999983
No 280
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=96.95 E-value=0.00089 Score=54.58 Aligned_cols=49 Identities=31% Similarity=0.545 Sum_probs=41.6
Q ss_pred ceEEEeec---CCcceeEeecCC---CceEEEeeCCCCccccccccccCcEeeee
Q 019871 85 EEYEVEIE---QPYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~~---g~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
+.++|+|. .++|+.+..+.+ .+++|..|.+++.|+++|.+++||+|+.+
T Consensus 25 ~~~~v~l~k~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~I 79 (124)
T 2daz_A 25 ELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEI 79 (124)
T ss_dssp EEEEEEEECCSSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEE
T ss_pred ceEEEEEEeCCCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEE
Confidence 45678887 478999966533 59999999999999999999999999998
No 281
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=96.93 E-value=0.0009 Score=56.12 Aligned_cols=54 Identities=30% Similarity=0.532 Sum_probs=41.7
Q ss_pred hhhccceEEEeecC-------CcceeEeecC--------------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 80 QEEKYEEYEVEIEQ-------PYGLKFAKGR--------------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 80 ~~~~~~~~~v~l~k-------Plgl~~~~~~--------------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+......+.|+|.| ++|+.+..+. +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 18 ~~~~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vn 92 (139)
T 2vz5_A 18 LYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVN 92 (139)
T ss_dssp ----CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred ccCCCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEEC
Confidence 33344567778876 7999885432 3699999999999999999 99999999983
No 282
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.92 E-value=0.01 Score=50.63 Aligned_cols=74 Identities=5% Similarity=0.053 Sum_probs=65.5
Q ss_pred ccCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 212 KERREQDLREGLQLYRTGKYE---VAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 212 ~~~~~~~~nlG~al~~~g~ye---eAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.+.....|+.+.++.+..+-+ ++|..++..+..+|.. ...-+|.+|..|.++|+|++|..+++..|+..|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 467788899999998887654 7999999999988865 2679999999999999999999999999999999865
No 283
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=96.92 E-value=0.001 Score=53.91 Aligned_cols=55 Identities=31% Similarity=0.527 Sum_probs=42.9
Q ss_pred hhhccceEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 80 QEEKYEEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 80 ~~~~~~~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+-.+-+..+|+|. .++|+.+..+. +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus 19 y~~~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vn 83 (117)
T 2byg_A 19 YFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVN 83 (117)
T ss_dssp -CEEEEEEEEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred ccCCCceEEEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 3334455666765 57889986542 4589999999999999999999999999983
No 284
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=96.92 E-value=0.00071 Score=52.51 Aligned_cols=48 Identities=27% Similarity=0.628 Sum_probs=40.2
Q ss_pred EEEeecC----CcceeEeecC--------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIEQ----PYGLKFAKGR--------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~k----Plgl~~~~~~--------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..|+|.| ++|+.+..+. +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 7 ~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~in 66 (98)
T 1ihj_A 7 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 66 (98)
T ss_dssp EEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEET
T ss_pred EEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 5677776 8999996542 2389999999999999999899999999983
No 285
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.92 E-value=0.0017 Score=64.92 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
..++|..++..|+|++|+.+|.++ . .|..+|.|+.++|++++|++++++|
T Consensus 125 ~~~IGd~~~~~g~yeeA~~~Y~~a-----~------n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 125 IQQVGDRCYDEKMYDAAKLLYNNV-----S------NFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp ------------CTTTHHHHHHHT-----T------CHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-----h------hHHHHHHHHHHhccHHHHHHHHHHc
Confidence 335555555555555555555544 1 2555555555555555555555555
No 286
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.91 E-value=0.0045 Score=60.49 Aligned_cols=121 Identities=7% Similarity=-0.083 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhccCHHHHH-HHHHHHHHcCC-------HHHHHH-HHHH--HHhcCCCCCcchHHHHHHHHHHHHCCC
Q 019871 199 EIQMQNYMKKKEQKERREQDL-REGLQLYRTGK-------YEVARE-KFES--VLGSKPTPEESSVASYNVACCYSKLNQ 267 (334)
Q Consensus 199 e~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~-------yeeAl~-~fek--ALeldP~~~e~~~a~yNlA~ay~~lG~ 267 (334)
..++..+.++++++|+...++ .++.++..... ..+++. .++. ++..+|.+ +.+|.-+|.++...|+
T Consensus 216 ~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~---a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 216 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL---SIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC---HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC---HHHHHHHHHHHHhCCC
Confidence 455678899999999987776 66766642111 111222 2222 23556776 6788888888888999
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhhchhHHHHHH
Q 019871 268 VKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENAINAIK 325 (334)
Q Consensus 268 ~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~~~ai~~~k 325 (334)
+++|+.++++|+.++|....++.... +. --.+++.++++.|++.+..+--.+.+.
T Consensus 293 ~d~A~~~l~rAl~Ln~s~~a~~llG~-~~--~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 293 TDESYQAINTGIDLEMSWLNYVLLGK-VY--EMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHH-HH--HHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHH-HH--HHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 99999999999999986322222211 11 124688899999988886554444443
No 287
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.91 E-value=0.0012 Score=52.52 Aligned_cols=51 Identities=33% Similarity=0.612 Sum_probs=42.7
Q ss_pred ccceEEEeecC---CcceeEeec--------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 83 KYEEYEVEIEQ---PYGLKFAKG--------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 83 ~~~~~~v~l~k---Plgl~~~~~--------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+.+.+++.+ .+|+.+..+ .+.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 13 ~~~~~~~~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in 74 (110)
T 1x5q_A 13 EEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVN 74 (110)
T ss_dssp CCEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred CcceEEEEEecCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 44678888874 788888643 35699999999999999999 99999999984
No 288
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.91 E-value=0.0013 Score=51.44 Aligned_cols=48 Identities=31% Similarity=0.533 Sum_probs=40.0
Q ss_pred eEEEeecC---CcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIEQ---PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~k---Plgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
...|+|.| ++|+.+.... ..+++|..|.+++.|+++| +++||+|+.+-
T Consensus 7 ~r~v~l~k~~~g~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in 58 (102)
T 2d90_A 7 GRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVN 58 (102)
T ss_dssp SEEEEEECCSSSSSCEEEECSSSSSEEEECCCTTSTTTTTT-CCTTCEEEEES
T ss_pred CEEEEEeeCCCCccEEEEeecCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 36677774 4899997643 4589999999999999999 99999999983
No 289
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=96.91 E-value=0.0015 Score=53.36 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=47.6
Q ss_pred ceEEEeecC----CcceeEeecCC-----CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871 85 EEYEVEIEQ----PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (334)
Q Consensus 85 ~~~~v~l~k----Plgl~~~~~~~-----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~ 155 (334)
+...|+|.| ++|+.+..+.+ .++||..|.+++.|+++|.+++||+|+.+- |..+....++..+..+++
T Consensus 25 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~in---g~~v~~~~~~~~~~~~l~ 101 (128)
T 2db5_A 25 QIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAIN---HTPLDQNISHQQAIALLQ 101 (128)
T ss_dssp EEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEES---SCBCSTTSCHHHHHHHHH
T ss_pred ceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEECCCCCCHHHHHHHHH
Confidence 456666663 57888865432 289999999999999999999999999984 322221224445555554
Q ss_pred H
Q 019871 156 Q 156 (334)
Q Consensus 156 ~ 156 (334)
.
T Consensus 102 ~ 102 (128)
T 2db5_A 102 Q 102 (128)
T ss_dssp H
T ss_pred c
Confidence 4
No 290
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=96.89 E-value=0.00035 Score=57.52 Aligned_cols=49 Identities=33% Similarity=0.631 Sum_probs=39.3
Q ss_pred eEEEeecC-----CcceeEeecC-----------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIEQ-----PYGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~k-----Plgl~~~~~~-----------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
...|+|.| ++|+.+..+. +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus 30 ~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vn 94 (128)
T 1nf3_C 30 HRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVN 94 (128)
T ss_dssp CEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEET
T ss_pred cEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 35566664 4888886432 2489999999999999999899999999983
No 291
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=96.87 E-value=0.0021 Score=48.99 Aligned_cols=39 Identities=21% Similarity=0.474 Sum_probs=34.1
Q ss_pred CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 94 Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+|+.+.. ..++++|..|.|++.|+++| +++||+|+.+-
T Consensus 18 ~lG~~~~~-~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in 56 (90)
T 2eaq_A 18 DFGFTIKW-DIPGIFVASVEAGSPAEFSQ-LQVDDEIIAIN 56 (90)
T ss_dssp CCSEEEEE-ETTEEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred cccEEEEe-cCCCEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence 48998854 45689999999999999999 99999999983
No 292
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=96.86 E-value=0.0012 Score=54.12 Aligned_cols=41 Identities=29% Similarity=0.615 Sum_probs=37.7
Q ss_pred CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|+.+..+.+++++|..|.|++.|+++| +++||+|+.+-
T Consensus 39 ~~lG~~l~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vn 79 (124)
T 3tsv_A 39 DSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVN 79 (124)
T ss_dssp SCCCEEEEECTTSCEEEEEECTTCHHHHTT-CCTTEEEEEET
T ss_pred CceeEEEecCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 689999977677899999999999999999 99999999983
No 293
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=96.86 E-value=0.00071 Score=53.22 Aligned_cols=49 Identities=27% Similarity=0.526 Sum_probs=41.4
Q ss_pred ceEEEeec--CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~--kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.++|+|. .|+|+.+..+.+ .+++|..|.+++.|+++| +++||+|+.+-
T Consensus 5 ~~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-L~~GD~I~~in 57 (103)
T 1wf7_A 5 SSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSID 57 (103)
T ss_dssp CCEEEEEESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTT-CCTTCBEEEET
T ss_pred CEEEEEEeCCCccCEEEeccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 55788877 889999966543 369999999999999999 99999999983
No 294
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=96.86 E-value=0.0012 Score=51.85 Aligned_cols=51 Identities=29% Similarity=0.569 Sum_probs=41.3
Q ss_pred hccceEEEeec--CCcceeEeec----------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 82 EKYEEYEVEIE--QPYGLKFAKG----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 82 ~~~~~~~v~l~--kPlgl~~~~~----------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
...+.+.|++. .++|+.+..+ .+.+++|..|.+++.|++ | +++||+|+.+-
T Consensus 8 ~~~~~~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vn 70 (103)
T 1n7t_A 8 LAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQAN 70 (103)
T ss_dssp SSCCCEEEEEECSSCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEET
T ss_pred cccEEEEEEEccCCCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEEC
Confidence 34566778877 5788888654 345899999999999999 7 99999999983
No 295
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.85 E-value=0.00078 Score=52.12 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=40.2
Q ss_pred ceEEEeec--CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE--QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~--kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+.|+|. .|+|+.+..+. +.+++|..|.|++.|+++| +++||+|+.+-
T Consensus 8 ~~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~in 60 (94)
T 2eeg_A 8 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAIN 60 (94)
T ss_dssp CCEEEEECCSSCCSCCEECCTTTTSCCEECCCCSSSHHHHTT-CCTTCEEEEET
T ss_pred ceEEEEEeCCCccCEEEECccCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 44666666 77888886544 4589999999999999999 99999999983
No 296
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0043 Score=58.10 Aligned_cols=64 Identities=11% Similarity=-0.019 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEE---SSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
.++|.++.+.|+|++|++.|.+++.+.+.... ...+..+++.++...|++++|+..++++++..
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFA 125 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 47788888888888888888888877665431 12455667777777788888888888877653
No 297
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=96.83 E-value=0.00091 Score=54.62 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=49.1
Q ss_pred cceEEEeec----CCcceeEeecCC-CceEEEeeCCCCccccccccccCcEeeeeccccccccccccc--hhhHHHHHHH
Q 019871 84 YEEYEVEIE----QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAE--YGRTMYTIRQ 156 (334)
Q Consensus 84 ~~~~~v~l~----kPlgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~--~~~v~sai~~ 156 (334)
.+.++|+|. ..+|+.+....+ ++++|..|.+++.|+++|.|++||+|+.+- | .++.+ +..+...+..
T Consensus 7 ~~~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~in---g---~~v~~~~~~~~~~~l~~ 80 (127)
T 1b8q_A 7 PNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVN---D---RPLVDLSYDSALEVLRG 80 (127)
T ss_dssp CCSEEEEEECTTTSCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEET---T---EECSSSCHHHHHHHHHS
T ss_pred CceEEEEEEeCCCCcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEEC---C---EECCCCCHHHHHHHHHh
Confidence 356777774 478898866543 599999999999999999559999999984 2 23334 4455555554
Q ss_pred h
Q 019871 157 R 157 (334)
Q Consensus 157 R 157 (334)
.
T Consensus 81 ~ 81 (127)
T 1b8q_A 81 I 81 (127)
T ss_dssp C
T ss_pred C
Confidence 3
No 298
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=96.82 E-value=0.0017 Score=49.77 Aligned_cols=61 Identities=25% Similarity=0.428 Sum_probs=42.3
Q ss_pred CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhH
Q 019871 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPL 161 (334)
Q Consensus 93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V 161 (334)
.++|+.+ .|++||..|.+||.|+++|.+++||+|+.+- |..+ ...+..++...++...+.+
T Consensus 13 ~~~G~~~----~~gv~V~~V~~gspA~~aG~L~~GD~Il~in---g~~v-~~~~~~~~~~~i~~~~~~v 73 (88)
T 3e17_A 13 EEYGLRL----GSQIFVKEMTRTGLATKDGNLHEGDIILKIN---GTVT-ENMSLTDARKLIEKSRGKL 73 (88)
T ss_dssp CCCCEEE----EEEEEEEEECTTSHHHHHCCCCTTCEEEEET---TEEC-TTCCHHHHHHHHHHTTTEE
T ss_pred CCCCEEE----eCCEEEEEECCCCHHHHcCCCCCCCEEEEEC---CEEC-CCCCHHHHHHHHHcCCCeE
Confidence 3577776 3589999999999999999999999999984 2211 1123345555555544433
No 299
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=96.81 E-value=0.0022 Score=49.44 Aligned_cols=48 Identities=31% Similarity=0.615 Sum_probs=39.4
Q ss_pred ceEEEeecC--CcceeEeecC----------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIEQ--PYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~k--Plgl~~~~~~----------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+++|++.| ++|+.+..+. +.+++|..|.|++.|++ + +++||+|+.+-
T Consensus 3 ~~~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vn 62 (95)
T 1mfg_A 3 MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQAN 62 (95)
T ss_dssp EEEEEEEECSSSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEET
T ss_pred eEEEEEECCCCCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEEC
Confidence 457787774 6888886543 34899999999999999 6 99999999983
No 300
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=96.81 E-value=0.0015 Score=53.24 Aligned_cols=51 Identities=18% Similarity=0.445 Sum_probs=42.2
Q ss_pred cceEEEeecC---CcceeEeecCC-----CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIEQ---PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~k---Plgl~~~~~~~-----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.+.|++.+ ++|+.+....+ .+++|..|.|++.|+++|.+++||+|+.+-
T Consensus 29 ~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~In 87 (121)
T 2kom_A 29 GKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVN 87 (121)
T ss_dssp CEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEET
T ss_pred CeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence 4667788764 67888865542 589999999999999998899999999984
No 301
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=96.80 E-value=0.00061 Score=55.61 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=52.2
Q ss_pred ceEEEeecC----CcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhh
Q 019871 85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV 158 (334)
Q Consensus 85 ~~~~v~l~k----Plgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~ 158 (334)
...+|+|.| .+|+.+..+.+ .+++|..|.+||.|+++|.+++||+|+.+- |..+ .......+...++...
T Consensus 19 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~in---g~~v-~~~~~~~~~~~l~~~~ 94 (125)
T 3hpk_A 19 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVN---GRSI-KGKTKVEVAKMIQEVK 94 (125)
T ss_dssp EEEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEET---TEEC-TTCCHHHHHHHHHHSC
T ss_pred CCeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEEC---CEEC-CCCCHHHHHHHHHcCC
Confidence 445666765 58899866543 479999999999999999999999999984 2111 1112334555555544
Q ss_pred hhHHHHhhc
Q 019871 159 GPLLMKMQK 167 (334)
Q Consensus 159 G~V~lkLek 167 (334)
+.+.+.+.+
T Consensus 95 ~~v~l~v~r 103 (125)
T 3hpk_A 95 GEVTIHYNK 103 (125)
T ss_dssp SEEEEEEEE
T ss_pred CeEEEEEEE
Confidence 444444433
No 302
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.79 E-value=0.0091 Score=50.32 Aligned_cols=75 Identities=5% Similarity=0.049 Sum_probs=64.7
Q ss_pred hccCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 211 QKERREQDLREGLQLYRTGKY---EVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 211 l~~~~~~~~nlG~al~~~g~y---eeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
-.|....-|+.+.++.+..+- .++|..++..++.+|.. ....+|.+|..+.++|+|++|+.+++..|+..|+|..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~--~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 346677788999999887765 47999999999988854 2579999999999999999999999999999999876
No 303
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=96.78 E-value=0.00037 Score=56.95 Aligned_cols=53 Identities=25% Similarity=0.449 Sum_probs=40.5
Q ss_pred hccceEEEeecC----CcceeEeecCC-----CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 82 EKYEEYEVEIEQ----PYGLKFAKGRD-----GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 82 ~~~~~~~v~l~k----Plgl~~~~~~~-----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
...+...|+|.| ++|+.+..+.+ .++||..|.|+|.|++++.+++||+|+.+-
T Consensus 21 ~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~Vn 82 (120)
T 2iwo_A 21 QSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTIC 82 (120)
T ss_dssp ----CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEET
T ss_pred CCCCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEEC
Confidence 334557788773 78899866532 389999999999999995599999999983
No 304
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=96.77 E-value=0.0032 Score=49.90 Aligned_cols=47 Identities=19% Similarity=0.490 Sum_probs=38.0
Q ss_pred EEEeec----CCcceeEeecCC--------------CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE----QPYGLKFAKGRD--------------GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~----kPlgl~~~~~~~--------------g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..|+|. .++|+.+..+.+ .+++|..|.+++.|+++| +++||+|+.+-
T Consensus 9 ~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vn 73 (109)
T 1q3o_A 9 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVN 73 (109)
T ss_dssp EEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred EEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 455554 578999865543 179999999999999999 99999999983
No 305
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=96.77 E-value=0.0014 Score=56.27 Aligned_cols=51 Identities=33% Similarity=0.589 Sum_probs=42.4
Q ss_pred cceEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
++..+|+|. .++|+.+.-+. +.++||..|.|++-|+++|.+++||+|+.+-
T Consensus 4 ~~~~~v~l~~~~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vn 64 (196)
T 3gsl_A 4 MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 64 (196)
T ss_dssp EEEEEEEEECBTTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred cEEEEEEEEECCCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEEC
Confidence 345566666 78999997653 4589999999999999999999999999984
No 306
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=96.76 E-value=0.0011 Score=53.55 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=41.9
Q ss_pred ccceEEEeecC----CcceeEeecCC---CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 83 KYEEYEVEIEQ----PYGLKFAKGRD---GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 83 ~~~~~~v~l~k----Plgl~~~~~~~---g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+.+.|.|.| ++|+.+..+.+ .+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 13 ~~~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~in 71 (119)
T 1x6d_A 13 LDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSIN 71 (119)
T ss_dssp CTTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEET
T ss_pred CCCeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence 33456666654 78999965543 489999999999999999999999999983
No 307
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=96.75 E-value=0.0035 Score=50.94 Aligned_cols=54 Identities=24% Similarity=0.436 Sum_probs=44.1
Q ss_pred hhccceEEEeecC----CcceeEeec------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 81 EEKYEEYEVEIEQ----PYGLKFAKG------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 81 ~~~~~~~~v~l~k----Plgl~~~~~------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
-...+.++|+|.| .+|+.+..+ .+..++|..|.+++.|+++|.+++||+|+.+-
T Consensus 11 ~~~~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~in 74 (122)
T 1v5q_A 11 VVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAIN 74 (122)
T ss_dssp CCCEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEET
T ss_pred cccceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence 3456788999873 588888643 23579999999999999999899999999983
No 308
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.75 E-value=0.0075 Score=46.91 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVA 259 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA 259 (334)
..++|.+++++|+++.|+..++++++++|++ ..+..|++
T Consensus 49 ~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~n~~ 87 (104)
T 2v5f_A 49 LDYLSYAVYQQGDLDKALLLTKKLLELDPEH---QRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHhhHH
Confidence 3499999999999999999999999999998 57888887
No 309
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.73 E-value=0.00092 Score=52.46 Aligned_cols=52 Identities=19% Similarity=0.428 Sum_probs=41.8
Q ss_pred ccceEEEeec--CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 83 KYEEYEVEIE--QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 83 ~~~~~~v~l~--kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
...++.|++. .|+|+.+..+. +.+++|..|.+++.|++++.+++||+|+.+-
T Consensus 9 ~~~~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~in 64 (100)
T 2edp_A 9 SFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNIN 64 (100)
T ss_dssp CCEEEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEET
T ss_pred CcEEEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 4567888887 57888886543 3479999999999999993499999999983
No 310
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=96.72 E-value=0.0036 Score=50.01 Aligned_cols=50 Identities=26% Similarity=0.476 Sum_probs=39.2
Q ss_pred ceEEEeec--CCcceeEeecC---C-CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE--QPYGLKFAKGR---D-GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~--kPlgl~~~~~~---~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+...|+|. .++|+.+.-+. . .++||..|.+++.|+++|.+++||+|+.+-
T Consensus 15 ~~~~v~l~k~~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vn 70 (109)
T 1wi4_A 15 AFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSIN 70 (109)
T ss_dssp TEEEEEECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEET
T ss_pred cEEEEEEeCCCccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEEC
Confidence 34455665 67778885432 2 279999999999999999999999999983
No 311
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=96.72 E-value=0.0017 Score=49.87 Aligned_cols=46 Identities=33% Similarity=0.582 Sum_probs=37.1
Q ss_pred EEeec---CCcceeEeecCC-CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 88 EVEIE---QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 88 ~v~l~---kPlgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.|+|. ..+|+.+..+.+ .+++|..|.+++.|+++| +++||+|+.+-
T Consensus 8 ~v~l~~~~~~~G~~l~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~in 57 (95)
T 3r68_A 8 VVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVN 57 (95)
T ss_dssp EEEEECBTTBCSCEEEEC--CCSEEEECCCTTSHHHHHT-CCTTEEEEEET
T ss_pred EEEEecCCCcccEEEEecCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEEC
Confidence 45554 578899965543 399999999999999999 99999999983
No 312
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=96.71 E-value=0.0018 Score=50.94 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=37.8
Q ss_pred EEEeecC----CcceeEee---------cCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIEQ----PYGLKFAK---------GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~k----Plgl~~~~---------~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+|.|.| ++|+.+.. ..+.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 17 ~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vn 76 (104)
T 2z17_A 17 KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANIN 76 (104)
T ss_dssp CEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEET
T ss_pred eEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence 4455554 58898865 124599999999999999999 99999999983
No 313
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.71 E-value=0.00065 Score=53.11 Aligned_cols=51 Identities=25% Similarity=0.621 Sum_probs=42.5
Q ss_pred cceEEEeec---CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 84 YEEYEVEIE---QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 84 ~~~~~v~l~---kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.+.+++. .++|+.+..+.+ .+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 10 ~~~~~v~l~~~~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vn 65 (103)
T 1wfv_A 10 FDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEIN 65 (103)
T ss_dssp SCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEET
T ss_pred ceEEEEEEecCCCcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence 456778886 358888876654 389999999999999999899999999983
No 314
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.69 E-value=0.004 Score=50.12 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=40.3
Q ss_pred ceEEEeecC----CcceeEeecCC--CceEEEeeCCCCccccc-cccccCcEeeeec
Q 019871 85 EEYEVEIEQ----PYGLKFAKGRD--GGTYIDAIAPGGSADKT-GMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~k----Plgl~~~~~~~--g~v~v~~~~~~~~a~~~-~~i~~gD~v~~~s 134 (334)
+...|+|.| ++|+.+..+.+ .+++|..|.+++.|+++ +.+++||+|+.+-
T Consensus 15 ~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~in 71 (119)
T 2cs5_A 15 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLIN 71 (119)
T ss_dssp CCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEET
T ss_pred CeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEEC
Confidence 346778775 58999865533 37999999999999999 3499999999983
No 315
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=96.66 E-value=0.0004 Score=51.57 Aligned_cols=39 Identities=31% Similarity=0.564 Sum_probs=34.4
Q ss_pred cCCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 92 ~kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+++|+.+. ++++|..|.+++.|+++|.+++||+|+.+-
T Consensus 12 ~~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~in 50 (81)
T 2rcz_A 12 NEEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKIN 50 (81)
T ss_dssp TCCCCEEEE----EEEEEEEECTTSHHHHHSSCCTTCEEEEET
T ss_pred CCCCCEEEe----CCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence 467888774 789999999999999998899999999983
No 316
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.65 E-value=0.0008 Score=53.48 Aligned_cols=52 Identities=27% Similarity=0.570 Sum_probs=43.3
Q ss_pred ccceEEEeecC---CcceeEeecCC-CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 83 KYEEYEVEIEQ---PYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 83 ~~~~~~v~l~k---Plgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+...|+|.| ++|+.+..+.+ .+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 13 ~~~~~~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vn 68 (113)
T 1um7_A 13 AREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVN 68 (113)
T ss_dssp CCSEEEEEEECCSSCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEES
T ss_pred CCceEEEEEEECCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 34668888874 78999866543 599999999999999998899999999983
No 317
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.64 E-value=0.002 Score=50.38 Aligned_cols=47 Identities=30% Similarity=0.617 Sum_probs=38.7
Q ss_pred EEEeecC-----CcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIEQ-----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~k-----Plgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+|.|.+ ++|+.+.... +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 10 ~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in 63 (101)
T 1uez_A 10 RLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVN 63 (101)
T ss_dssp EEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEET
T ss_pred EEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 4455544 7899996654 3589999999999999999 99999999983
No 318
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=96.64 E-value=0.0038 Score=48.37 Aligned_cols=46 Identities=17% Similarity=0.551 Sum_probs=37.0
Q ss_pred EEeec---CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 88 EVEIE---QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 88 ~v~l~---kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|. .++|+.+..+. .++++|..|.+++.|+++| +++||+|+.+-
T Consensus 12 ~~~l~~~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in 61 (98)
T 2jxo_A 12 LCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVN 61 (98)
T ss_dssp EEEEECTTTCCCEEEECCCSSSCEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred EEEEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 34454 45788885543 3499999999999999999 99999999983
No 319
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=96.63 E-value=0.0026 Score=52.63 Aligned_cols=41 Identities=32% Similarity=0.487 Sum_probs=35.0
Q ss_pred CCcceeEeecC-----CCceEEEeeCCCCccccccccccCcEeeee
Q 019871 93 QPYGLKFAKGR-----DGGTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 93 kPlgl~~~~~~-----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
.++|+.+..+. +.++||..|.+++.|+++|.+++||+|+.+
T Consensus 48 ~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~i 93 (131)
T 1wfg_A 48 AMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEW 93 (131)
T ss_dssp TTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEE
T ss_pred CCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence 35899985432 238999999999999999999999999998
No 320
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.63 E-value=0.00081 Score=67.27 Aligned_cols=103 Identities=11% Similarity=0.008 Sum_probs=43.9
Q ss_pred HHHHhhhhHHHHhhcccchhhhhchhcHHHHHHHhhchhhhhh--hHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHcCC
Q 019871 153 TIRQRVGPLLMKMQKRYGKMEQTGELSEKEIIRAERNSGVISN--RVREIQMQNYMKKKEQKERREQDLREGLQLYRTGK 230 (334)
Q Consensus 153 ai~~R~G~V~lkLek~~~aie~~~~l~ek~~~~a~~n~g~~~~--~l~e~q~~~y~~~iel~~~~~~~~nlG~al~~~g~ 230 (334)
++.+.++.+|.++++.....+.... . . ..+|.+.|.... +..+.+...|.+. .....+|.+++++|+
T Consensus 95 ~i~~~Li~~Y~Klg~l~e~e~f~~~-p-n--~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 95 YVETELIFALAKTNRLAELEEFING-P-N--NAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGE 163 (449)
T ss_dssp --------------CHHHHTTTTTC-C-------------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHcC-C-c--HHHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhcc
Confidence 3455556666676666554443221 1 1 113334443332 2223333444332 234588899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHH
Q 019871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSA 274 (334)
Q Consensus 231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~ 274 (334)
|++|+++|++| .+ +.+|-+...++..+|+++.|..+
T Consensus 164 yq~AVea~~KA-----~~---~~~Wk~v~~aCv~~~ef~lA~~~ 199 (449)
T 1b89_A 164 YQAAVDGARKA-----NS---TRTWKEVCFACVDGKEFRLAQMC 199 (449)
T ss_dssp HHHHHHHHHHH-----TC---HHHHHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHc-----CC---chhHHHHHHHHHHcCcHHHHHHH
Confidence 99999999988 12 34666665555555555555443
No 321
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=96.59 E-value=0.0027 Score=50.26 Aligned_cols=52 Identities=27% Similarity=0.548 Sum_probs=40.5
Q ss_pred hccceEEEeecC------CcceeEeec-CCC--ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 82 EKYEEYEVEIEQ------PYGLKFAKG-RDG--GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 82 ~~~~~~~v~l~k------Plgl~~~~~-~~g--~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
|.++.-.|.|.| ++|+.+... .+| +++|..|.+++.|+++| +++||+|+.+-
T Consensus 3 ~~~~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vn 63 (94)
T 3kzd_A 3 MGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEIN 63 (94)
T ss_dssp -CCEEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred cccceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 445555666664 388888663 333 89999999999999999 99999999983
No 322
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.59 E-value=0.0021 Score=50.19 Aligned_cols=47 Identities=28% Similarity=0.553 Sum_probs=38.3
Q ss_pred EEEeec---C-CcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE---Q-PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~---k-Plgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+|+|. + ++|+.+.... ..+++|..|.+++.|+++| +++||+|+.+-
T Consensus 12 ~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~in 64 (100)
T 2eeh_A 12 HSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVN 64 (100)
T ss_dssp CCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHT-CCSSCEEEEET
T ss_pred EEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 445555 2 3999996653 3589999999999999999 99999999983
No 323
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.59 E-value=0.0018 Score=49.53 Aligned_cols=48 Identities=31% Similarity=0.619 Sum_probs=38.9
Q ss_pred EEEeec---CCcceeEeec--CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE---QPYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~---kPlgl~~~~~--~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..|+|. .++|+.+..+ .+.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 7 r~v~l~k~~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vn 59 (93)
T 2dkr_A 7 GVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVN 59 (93)
T ss_dssp CEEEEECCTTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEET
T ss_pred EEEEEEeCCCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 345554 6789999654 34699999999999999996699999999983
No 324
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.56 E-value=0.0023 Score=51.67 Aligned_cols=55 Identities=31% Similarity=0.564 Sum_probs=42.3
Q ss_pred hhhccceEEEeecC----------CcceeEeecCC-------CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 80 QEEKYEEYEVEIEQ----------PYGLKFAKGRD-------GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 80 ~~~~~~~~~v~l~k----------Plgl~~~~~~~-------g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.-.....+|+|.| ++|+.+..+.+ -+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 7 ~~~~~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vn 78 (117)
T 1ujd_A 7 GHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWN 78 (117)
T ss_dssp CCCSSCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEET
T ss_pred CCCCCceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 33445556666663 47888865433 279999999999999999999999999983
No 325
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=96.55 E-value=0.0036 Score=51.39 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=40.9
Q ss_pred ceEEEeec---CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.++|+|. ..+|+.+..+. +.+++|..|.++|.|+++|.+++||+|+.+-
T Consensus 18 ~~~~v~l~~~~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vn 72 (129)
T 2kpk_A 18 KFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVN 72 (129)
T ss_dssp EEEEEEEEECSSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEET
T ss_pred cEEEEEEEECCCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence 45667776 46888886543 3379999999999999999999999999983
No 326
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.55 E-value=0.0035 Score=50.19 Aligned_cols=51 Identities=27% Similarity=0.497 Sum_probs=40.0
Q ss_pred ccceEEEeecC----CcceeEeecC----CC-----ceEEEeeCCCCcccc-ccccccCcEeeeec
Q 019871 83 KYEEYEVEIEQ----PYGLKFAKGR----DG-----GTYIDAIAPGGSADK-TGMFQVGDKVLATS 134 (334)
Q Consensus 83 ~~~~~~v~l~k----Plgl~~~~~~----~g-----~v~v~~~~~~~~a~~-~~~i~~gD~v~~~s 134 (334)
..+..+|.|.| ++|+.+.... .| .++|..|.+++.|++ +| +++||+|+.+-
T Consensus 8 ~~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~in 72 (114)
T 1uew_A 8 SLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVN 72 (114)
T ss_dssp CCCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEET
T ss_pred cccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEEC
Confidence 34667888864 6899995432 22 569999999999999 66 99999999984
No 327
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.54 E-value=0.0039 Score=59.25 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHC-----CChHHHHHHHHHHHHcCCCC
Q 019871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKL-----NQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~l-----G~~eeAl~~lekAIelgp~~ 285 (334)
...|...+++|+++||+..+ ..+|.-+|..|.++ |+.++|.++|++||+++|+.
T Consensus 179 l~~A~a~lerAleLDP~~~~-GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQE-GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHH-HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHhCCCccc-CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 58999999999999999422 67999999999996 99999999999999999964
No 328
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=96.51 E-value=0.0016 Score=51.23 Aligned_cols=48 Identities=29% Similarity=0.499 Sum_probs=39.6
Q ss_pred eEEEeec--CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~--kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.|.++ .++|+.+..+.+ .+++|..|.+++.|+++| +++||+|+.+-
T Consensus 6 ~~~v~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~in 57 (103)
T 1v5l_A 6 SGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAID 57 (103)
T ss_dssp CBCCEEESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEET
T ss_pred EEEEEEcCCCCcCEEEeccccCCCCeEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 3555555 689999976654 379999999999999999 99999999983
No 329
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=96.50 E-value=0.0045 Score=47.68 Aligned_cols=47 Identities=26% Similarity=0.523 Sum_probs=37.7
Q ss_pred ceEEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
....|+|. .++|+.+. .+.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 8 ~~r~v~l~~~~~~~G~~l~--~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in 57 (93)
T 2dls_A 8 VQRCVIIQKDQHGFGFTVS--GDRIVLVQSVRPGGAAMKAG-VKEGDRIIKVN 57 (93)
T ss_dssp CEEEEEEECSSSSCCEEEE--CSSSCEEEEECSSSTTTTTT-CCSSCEEEEET
T ss_pred CCEEEEEEeCCCceeEEEe--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 34566665 35677773 35689999999999999999 99999999983
No 330
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=96.49 E-value=0.0033 Score=48.69 Aligned_cols=48 Identities=17% Similarity=0.393 Sum_probs=38.0
Q ss_pred eEEEeec----CCcceeEee-------cC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIE----QPYGLKFAK-------GR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~----kPlgl~~~~-------~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+|+|. .++|+.+.. +. +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 5 ~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~in 65 (96)
T 2ego_A 5 RKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVN 65 (96)
T ss_dssp EEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEET
T ss_pred cEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence 4667776 378888864 22 2389999999999999999 99999999983
No 331
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=96.47 E-value=0.0018 Score=50.01 Aligned_cols=48 Identities=23% Similarity=0.553 Sum_probs=39.4
Q ss_pred eEEEeec--CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~--kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.+++. .++|+.+..+.+ .+++|..|.+++.|+++| +++||+|+.+-
T Consensus 7 ~~~~~~~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in 58 (94)
T 1vb7_A 7 GLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAIN 58 (94)
T ss_dssp CEEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHT-CCTTCEEEEET
T ss_pred EEEEEecCCCCccEEEecccCCCCCeEEEEECCCCHHHHCC-CCCCCEEEEEC
Confidence 3555555 788999976543 489999999999999999 99999999983
No 332
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=96.46 E-value=0.001 Score=52.54 Aligned_cols=49 Identities=31% Similarity=0.497 Sum_probs=38.7
Q ss_pred eEEEeec----CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIE----QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~----kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
...|+|. .++|+.+.-+. +.+++|..|.++|.|++++.+++||+|+.+-
T Consensus 10 ~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~In 64 (103)
T 2dc2_A 10 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVN 64 (103)
T ss_dssp EEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEET
T ss_pred cEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEEC
Confidence 3566665 47899986543 2389999999999999974499999999984
No 333
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=96.46 E-value=0.00098 Score=53.89 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=35.1
Q ss_pred CcceeEeecCCC--ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 94 PYGLKFAKGRDG--GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 94 Plgl~~~~~~~g--~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+|+.+..+.+. +++|..|.+++.|+++|.+++||+|+.+-
T Consensus 37 ~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~In 79 (114)
T 2gzv_A 37 LIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVN 79 (114)
T ss_dssp CCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred cEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEEC
Confidence 389999765443 79999999999999999899999999983
No 334
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.45 E-value=0.0025 Score=50.70 Aligned_cols=49 Identities=29% Similarity=0.583 Sum_probs=39.5
Q ss_pred eEEEeec----CCcceeEeecC-----------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIE----QPYGLKFAKGR-----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~----kPlgl~~~~~~-----------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+|+|. .++|+.+..+. +.+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 10 ~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vn 73 (111)
T 1uju_A 10 LRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVN 73 (111)
T ss_dssp SSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBS
T ss_pred cEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 3455554 46899996544 2379999999999999999999999999983
No 335
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=96.45 E-value=0.0084 Score=47.73 Aligned_cols=41 Identities=22% Similarity=0.618 Sum_probs=35.7
Q ss_pred CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 93 QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|+.+.... +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 27 ~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vn 69 (114)
T 1x5n_A 27 RGLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVN 69 (114)
T ss_dssp CCCCEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEET
T ss_pred CceeEEEeecCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 67899996543 3589999999999999999 99999999984
No 336
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=96.39 E-value=0.0044 Score=49.80 Aligned_cols=52 Identities=31% Similarity=0.610 Sum_probs=41.4
Q ss_pred hhccceEEEeec----CCcceeEeecC--------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 81 EEKYEEYEVEIE----QPYGLKFAKGR--------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 81 ~~~~~~~~v~l~----kPlgl~~~~~~--------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+...+.++|+|. .++|+.+..+. +.+++|..|.+++.|+ ++ +++||+|+.+-
T Consensus 10 ~~~~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vn 73 (117)
T 2csj_A 10 EVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVN 73 (117)
T ss_dssp CEEEEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEES
T ss_pred cccceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEEC
Confidence 345677888886 46888886653 3479999999999997 55 99999999983
No 337
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=96.38 E-value=0.0031 Score=47.73 Aligned_cols=48 Identities=31% Similarity=0.526 Sum_probs=37.4
Q ss_pred EEEeec----CCcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE----QPYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~----kPlgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
++|+|. .++|+.+..+. +.+++|..|.|+|.|++++.+++||+|+.+-
T Consensus 4 ~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vn 57 (87)
T 4e34_A 4 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVN 57 (87)
T ss_dssp EEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEET
T ss_pred EEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEEC
Confidence 456665 37888886542 3479999999999999953399999999984
No 338
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=96.35 E-value=0.0018 Score=50.69 Aligned_cols=52 Identities=27% Similarity=0.497 Sum_probs=41.7
Q ss_pred hhhccceEEEeecC---CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 80 QEEKYEEYEVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 80 ~~~~~~~~~v~l~k---Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.....+++.|+|.+ .+|+.+.. +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 10 ~~~~~~~~~v~l~~~~~g~G~~~~~--~~~~~V~~V~~~spA~~aG-L~~GD~I~~vn 64 (100)
T 1whd_A 10 DPENGEKLQITIRRGKDGFGFTICC--DSPVRVQAVDSGGPAERAG-LQQLDTVLQLN 64 (100)
T ss_dssp SCCCCEEEEEEEECCSSSSSCBCCC--SSSCBCCBCCTTSHHHHHT-CCSSCEEEEET
T ss_pred CccccceEEEEEECCCCeeeEEEeC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 34456778888874 46666633 4689999999999999999 99999999983
No 339
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=96.34 E-value=0.0042 Score=49.95 Aligned_cols=41 Identities=24% Similarity=0.579 Sum_probs=35.2
Q ss_pred cCCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 92 EQPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 92 ~kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
....|+.+.. .++++.|..|.+|+.|+++| +++||+|+++-
T Consensus 27 ~~g~G~~l~~-~~~~~~I~~V~~gSpA~~AG-L~~GD~I~~In 67 (101)
T 3qik_A 27 EEDYGFDIEE-KNKAVVVKSVQRGSLAEVAG-LQVGRKIYSIN 67 (101)
T ss_dssp SSSSSEEEEE-ETTEEEEEEECTTSHHHHHT-CCTTCBEEEET
T ss_pred CCcccEEEEc-cCCCeEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 3667788755 46789999999999999999 99999999983
No 340
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.33 E-value=0.0056 Score=48.44 Aligned_cols=48 Identities=27% Similarity=0.432 Sum_probs=39.2
Q ss_pred EEEeec---CCcceeEeecCCC---ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE---QPYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~---kPlgl~~~~~~~g---~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..|.|. .++|+.+.-+.+. .++|..|.+++.|+++|.+++||+|+.+-
T Consensus 8 ~~v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vn 61 (103)
T 1ufx_A 8 TLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVN 61 (103)
T ss_dssp EEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEET
T ss_pred EEEEEEcCCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEEC
Confidence 556666 4788998655543 35999999999999999999999999983
No 341
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=96.31 E-value=0.0038 Score=48.79 Aligned_cols=40 Identities=33% Similarity=0.743 Sum_probs=34.0
Q ss_pred CcceeEeec--------------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 94 PYGLKFAKG--------------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 94 Plgl~~~~~--------------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
++|+.+.-+ ...+++|..|.+++.|+++| +++||+|+.+-
T Consensus 20 ~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~in 73 (104)
T 3sfj_A 20 ILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVN 73 (104)
T ss_dssp ECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred cccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence 488888622 24589999999999999999 99999999983
No 342
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=96.29 E-value=0.0042 Score=47.91 Aligned_cols=41 Identities=32% Similarity=0.662 Sum_probs=34.6
Q ss_pred CCcceeEeecC--C--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 93 QPYGLKFAKGR--D--GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~~--~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|+.+.... + .+++|..|.+++.|+++| +++||+|+.+-
T Consensus 14 ~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in 58 (96)
T 2v90_A 14 QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVA 58 (96)
T ss_dssp TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTT-CCTTEEEEEET
T ss_pred CcccEEEEeccCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence 57888886532 2 279999999999999999 99999999984
No 343
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=96.28 E-value=0.0045 Score=54.02 Aligned_cols=50 Identities=18% Similarity=0.416 Sum_probs=41.6
Q ss_pred ceEEEeec---CCcceeEeecCC----CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGRD----GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~~----g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
++++|+|. .++|+.+..+.+ .+++|..|.++|-|+++|.+++||+|+.+-
T Consensus 18 ~~~~v~~~~~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vn 74 (206)
T 3r0h_A 18 KKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDIN 74 (206)
T ss_dssp SCEEEEEECTTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred CEEEEEEEeCCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEEC
Confidence 45667775 689999965433 379999999999999998899999999984
No 344
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=96.22 E-value=0.0042 Score=49.26 Aligned_cols=42 Identities=40% Similarity=0.718 Sum_probs=36.3
Q ss_pred CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 93 QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|+.+.-+. +++++|..|.++|.|+++|.+++||+|+.+-
T Consensus 13 ~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vn 61 (106)
T 4amh_A 13 KGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 61 (106)
T ss_dssp CCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred CccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEC
Confidence 68899986542 3489999999999999999999999999984
No 345
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=96.21 E-value=0.003 Score=49.63 Aligned_cols=41 Identities=34% Similarity=0.580 Sum_probs=34.9
Q ss_pred CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 93 QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|+.+.... .++++|..|.|++.|+++| +++||+|+.+-
T Consensus 13 ~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in 54 (106)
T 3ngh_A 13 QNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRIN 54 (106)
T ss_dssp CCCCCEEECCTTCCSCEEECCCTTSHHHHTT-CCTTCEEEEET
T ss_pred CeeCEEEEEEeCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEEC
Confidence 46888886553 3489999999999999999 99999999983
No 346
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=96.19 E-value=0.01 Score=47.38 Aligned_cols=47 Identities=32% Similarity=0.528 Sum_probs=38.0
Q ss_pred EEEeec----CCcceeEeec-CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE----QPYGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~----kPlgl~~~~~-~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
|.+.|. +.+|+.+... ...+++|..|.+++.|+++| +++||+|+.+-
T Consensus 15 ~~~~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in 66 (114)
T 2edz_A 15 RECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRIN 66 (114)
T ss_dssp EEEEEECCTTCCCSCEEECCTTCCSCEEECCCTTCTTGGGT-CCTTCEEEEES
T ss_pred EEEEEeCCCCCcccEEEEEecCCCCeEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence 555443 5788888543 34589999999999999999 99999999984
No 347
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=96.18 E-value=0.0049 Score=46.92 Aligned_cols=38 Identities=32% Similarity=0.571 Sum_probs=33.5
Q ss_pred CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+++|+.+. ++++|..|.+++.|+++|.+++||+|+.+-
T Consensus 15 ~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~in 52 (92)
T 3cyy_A 15 EEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKIN 52 (92)
T ss_dssp SCCCEEEE----EEEEEEEECTTCHHHHSCCCCTTCEEEEET
T ss_pred CCCCEEEe----CCEEEEEECCCChHHhcCCCCCCCEEEEEC
Confidence 46788774 689999999999999998899999999983
No 348
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=96.17 E-value=0.0034 Score=47.09 Aligned_cols=45 Identities=27% Similarity=0.544 Sum_probs=35.4
Q ss_pred EEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+|+|. ..+|+.+. .+.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 4 r~v~l~~~~~g~G~~~~--~~~~~~V~~V~~~spA~~aG-l~~GD~I~~in 51 (83)
T 2kv8_A 4 RSVEVARGRAGYGFTLS--GQAPCVLSCVMRGSPADFVG-LRAGDQILAVN 51 (83)
T ss_dssp EEEEECCCSSCCSCBCC--CSSSCBCCBCCTTSTTTTTT-CCTTCEEEEET
T ss_pred EEEEEEeCCCcccEEEE--cCCCeEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence 566776 33555553 24479999999999999999 99999999983
No 349
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=96.17 E-value=0.015 Score=46.88 Aligned_cols=45 Identities=27% Similarity=0.461 Sum_probs=36.5
Q ss_pred eecCCcceeEeecC---CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 90 EIEQPYGLKFAKGR---DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 90 ~l~kPlgl~~~~~~---~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.-...+|+.+.-+. .|.++|..|.++|.|+++|.+++||+|+.+-
T Consensus 25 ~~~~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~In 72 (118)
T 1v6b_A 25 KKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAIN 72 (118)
T ss_dssp ESCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEES
T ss_pred CCCCccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 33467888886543 3679999999999999995599999999983
No 350
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=96.16 E-value=0.0091 Score=45.21 Aligned_cols=47 Identities=23% Similarity=0.454 Sum_probs=35.1
Q ss_pred ceEEEeecC---CcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIEQ---PYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~k---Plgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.++|+|.| .+|+.+.... +++++|..+ +++.|+ +| +++||+|+.+-
T Consensus 3 ~~~~v~l~k~~~g~G~~~~~~~~~~~~~v~~v-~~spA~-aG-l~~GD~I~~vn 53 (88)
T 3bpu_A 3 ELITVHIVKGPMGFGFTIADSPGGGGQRVKQI-VDSPRS-RG-LKEGDLIVEVN 53 (88)
T ss_dssp EEEEEEEECBTTBSSCEEEECTTSSSEEEEEC-CC--CC-TT-CCTTCEEEEET
T ss_pred cEEEEEEEcCCCceeEEEEecCCCCcEEEEEe-cCChhH-hC-CCCCCEEEEEC
Confidence 456777764 5888886653 358899887 899998 76 99999999984
No 351
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=96.15 E-value=0.0034 Score=58.50 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=54.8
Q ss_pred ccceEEEeecC----CcceeEeecC--CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 83 KYEEYEVEIEQ----PYGLKFAKGR--DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 83 ~~~~~~v~l~k----Plgl~~~~~~--~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
..+...|+|.| ++|+.+..+. +.++||..|.+||.|++++.+++||+|+.|- |..+- .....++...++.
T Consensus 75 ~~~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VN---G~~v~-~~t~~e~v~~l~~ 150 (263)
T 1z87_A 75 LLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVN---GEDLS-SATHDEAVQALKK 150 (263)
T ss_dssp SCSSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEES---SCBCT-TSCHHHHHHHHHH
T ss_pred CCccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEEC---CEECC-CcCHHHHHHHHhc
Confidence 34568888875 6889997654 3589999999999999954499999999983 22221 1123355555555
Q ss_pred hhhhHHHHhhcc
Q 019871 157 RVGPLLMKMQKR 168 (334)
Q Consensus 157 R~G~V~lkLek~ 168 (334)
--+.|.+.+.+.
T Consensus 151 ~g~~V~L~V~R~ 162 (263)
T 1z87_A 151 TGKEVVLEVKYM 162 (263)
T ss_dssp CCSCCCEEEECC
T ss_pred CCCeEEEEEEeC
Confidence 444455554443
No 352
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=96.10 E-value=0.008 Score=58.81 Aligned_cols=41 Identities=29% Similarity=0.615 Sum_probs=38.2
Q ss_pred CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|+.+..+++++|+|..|.+||.|+++| +++||+|+.+-
T Consensus 19 ~~lG~~i~gg~~~gi~V~~V~~gspA~~aG-L~~GD~Il~Vn 59 (391)
T 3tsz_A 19 DSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVN 59 (391)
T ss_dssp SSCCEEEEEETTTEEEEEEECTTCHHHHTT-CCTTEEEEEET
T ss_pred CceeEEEEecCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 589999977788999999999999999999 99999999984
No 353
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=96.05 E-value=0.005 Score=47.13 Aligned_cols=44 Identities=27% Similarity=0.542 Sum_probs=34.7
Q ss_pred EEeecC---CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 88 EVEIEQ---PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 88 ~v~l~k---Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.|+|.| .+|+.+. .+.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 6 ~v~l~~~~~g~G~~l~--~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vn 52 (91)
T 2f5y_A 6 QITIPRGKDGFGFTIC--CDSPVRVQAVDSGGPAERAG-LQQLDTVLQLN 52 (91)
T ss_dssp EEEEECBTTBTSEEEE--CSSSCEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred EEEEEeCCCCccEEEe--cCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 455553 3666663 34569999999999999999 99999999984
No 354
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=96.04 E-value=0.0066 Score=49.51 Aligned_cols=47 Identities=30% Similarity=0.664 Sum_probs=37.9
Q ss_pred EEEeec--CCcceeEeecCC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE--QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~--kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.|++. .++|+.+....+ .+++|..|.+++.|+++| +++||+|+.+-
T Consensus 24 v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vn 74 (128)
T 1uf1_A 24 VNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVN 74 (128)
T ss_dssp EEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHT-CCTTCEEEEET
T ss_pred EEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCC-CCCCCEEEEEC
Confidence 444444 579998866432 389999999999999999 99999999983
No 355
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.03 E-value=0.0038 Score=49.03 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=38.2
Q ss_pred EEEeec---CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE---QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~---kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..|+|. .++|+.+.... +.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 10 r~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~vn 60 (106)
T 2eei_A 10 RLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEVN 60 (106)
T ss_dssp EEEEEECCSSSCSCCEECCSSCCSCEECCCCTTSHHHHHT-CCSSEEEEEET
T ss_pred EEEEEEECCCCCCEEEEeccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 445555 57889885433 3589999999999999999 99999999983
No 356
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=96.03 E-value=0.012 Score=47.70 Aligned_cols=47 Identities=17% Similarity=0.527 Sum_probs=38.3
Q ss_pred EEEeec---CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE---QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~---kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..|+|. ..+|+.+..+. .++++|..|.+++.|+++| +++||+|+.+-
T Consensus 11 r~v~l~~~~~g~G~~l~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~in 61 (128)
T 2kjd_A 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVN 61 (128)
T ss_dssp EEEEEECCSSSCCEEEEECSSSCSEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred EEEEEecCCCcccEEEEecCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence 445554 56888886554 3599999999999999999 99999999984
No 357
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.00 E-value=0.022 Score=48.84 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCC---ChHHHHHHHHHHHHcC-CCCHHHHhcChhhHHHhcChHHH
Q 019871 230 KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLN---QVKAGLSALEDALLAG-YEDFKRVRTDPDLENLRASEEFD 305 (334)
Q Consensus 230 ~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG---~~eeAl~~lekAIelg-p~~~~~i~~Dpdl~~Lr~dp~F~ 305 (334)
....+.+.|++.++.+|.+ ..+.|+.|.|+.+.+ ++++|+..|+..++.+ |.+....+..-.+...+ ..+|.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~---~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~ 88 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVS---KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHH
T ss_pred HHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHH
Confidence 3456778888898888876 689999999999999 6779999999999998 64444455555666544 57899
Q ss_pred HHHHHHHHhh----hchhHHHHHHH
Q 019871 306 VLLKRFDESF----INENAINAIKS 326 (334)
Q Consensus 306 ~lL~~~~e~~----~~~~ai~~~k~ 326 (334)
++++.++..+ .|.+|.+..+.
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999888888 45577766443
No 358
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.98 E-value=0.018 Score=50.31 Aligned_cols=60 Identities=25% Similarity=0.384 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC--------------------CcchHHHHHHHHHHHHCCChHHHHH
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSK---PTP--------------------EESSVASYNVACCYSKLNQVKAGLS 273 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeld---P~~--------------------~e~~~a~yNlA~ay~~lG~~eeAl~ 273 (334)
..+.+|+++|..++|..|+..|++||.+. +.. .| ...-|.+|.||.+++++++||.
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e-~Elkykia~C~~~l~~~~~Ai~ 143 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSE-IEVKYKLAECYTVLKQDKDAIA 143 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccch-HHHHHHHHHHHHHHCCHHHHHH
Confidence 34599999999999999999999997542 111 11 2577999999999999999999
Q ss_pred HHHH
Q 019871 274 ALED 277 (334)
Q Consensus 274 ~lek 277 (334)
.|+.
T Consensus 144 ~Le~ 147 (167)
T 3ffl_A 144 ILDG 147 (167)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9875
No 359
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=95.96 E-value=0.0063 Score=51.74 Aligned_cols=46 Identities=26% Similarity=0.507 Sum_probs=39.4
Q ss_pred EEEeecC----CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~k----Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+|.|.| .+|+.+.. .+++++|..|.|++.|+++| +++||+|+.+-
T Consensus 6 r~v~l~k~~~~~lG~~~~~-~~~g~~V~~v~~~spA~~aG-l~~GD~I~~in 55 (166)
T 1w9e_A 6 REVILCKDQDGKIGLRLKS-IDNGIFVQLVQANSPASLVG-LRFGDQVLQIN 55 (166)
T ss_dssp EEEEEECCTTSCCSEEEEE-ETTEEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred EEEEEEeCCCCcEeEEEEe-CCCCEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence 5566665 68999965 46789999999999999999 99999999983
No 360
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=95.95 E-value=0.0097 Score=47.29 Aligned_cols=45 Identities=22% Similarity=0.342 Sum_probs=34.8
Q ss_pred CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (334)
Q Consensus 104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~ 155 (334)
.++++|..|.+++.|+++| +++||+|+.+- ..++.++..+..++.
T Consensus 34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~in------g~~v~~~~~~~~~l~ 78 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIG------EQMVQNAEDVYEAVR 78 (113)
T ss_dssp SSCEEEEEEBTTSHHHHHT-CCTTCEEEEET------TEECCSHHHHHHHHH
T ss_pred CCCeEEEEeCCCChHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHh
Confidence 5789999999999999999 99999999983 234445555555444
No 361
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=95.89 E-value=0.0077 Score=47.34 Aligned_cols=50 Identities=22% Similarity=0.368 Sum_probs=39.9
Q ss_pred ceEEEeec----CCcceeEeecCC--CceEEEeeCCCCccccccc-cccCcEeeeec
Q 019871 85 EEYEVEIE----QPYGLKFAKGRD--GGTYIDAIAPGGSADKTGM-FQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~----kPlgl~~~~~~~--g~v~v~~~~~~~~a~~~~~-i~~gD~v~~~s 134 (334)
....|.|. .++|+.+.-+.+ .+++|..|.+++.|+++|. +++||+|+.+-
T Consensus 17 ~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~in 73 (107)
T 3nfk_A 17 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLIN 73 (107)
T ss_dssp CCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEET
T ss_pred CEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEEC
Confidence 34666665 378888865433 3799999999999999994 99999999983
No 362
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=95.85 E-value=0.012 Score=45.84 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=36.1
Q ss_pred ceEEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.+.|+|. ..+|+.+... ..+++|..|.++ |+++| +++||+|+.+-
T Consensus 10 ~~~~v~l~~~~~g~G~~i~~~-~~Gv~V~~v~~~--a~~aG-L~~GD~I~~vn 58 (96)
T 1ujv_A 10 ELMTLTIVKGAQGFGFTIADS-PTGQRVKQILDI--QGCPG-LCEGDLIVEIN 58 (96)
T ss_dssp CCEEEEEECCSSSSSEEEEEE-TTEEEEEEESCG--GGSTT-CCSSCEEEEET
T ss_pred eEEEEEEEeCCCceeEEEEcC-CCCEEEEEEecc--cccCC-CCCCCEEEEEC
Confidence 56788887 4688888543 346999999994 77777 99999999983
No 363
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=95.80 E-value=0.0096 Score=51.87 Aligned_cols=50 Identities=26% Similarity=0.506 Sum_probs=41.7
Q ss_pred ceEEEeecC----CcceeEeecC------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIEQ----PYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~k----Plgl~~~~~~------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.++|+|.| .+|+.+..+. +.+++|..|.|++-|+++|.+++||+|+.+-
T Consensus 6 ~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vn 65 (196)
T 1p1d_A 6 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAIN 65 (196)
T ss_dssp EEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEET
T ss_pred EEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 567777763 5889997752 3479999999999999999899999999983
No 364
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=95.79 E-value=0.0038 Score=54.47 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=39.9
Q ss_pred ceEEEeec----CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~----kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..++|++. ..+|+.+.. .+.+++|..|.+||.|+++|.+++||+|+.+-
T Consensus 113 ~~~~v~l~~~~~~~lG~~~~~-~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VN 165 (206)
T 3r0h_A 113 EKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFN 165 (206)
T ss_dssp EEEEEEEECCTTCCCCEEEEE-CSSCEEEEEECTTSCHHHHHHCCTTCEEEEET
T ss_pred cEEEEEEecCCCCccCeEEEc-CCceEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence 35666664 357888864 45689999999999999998899999999984
No 365
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=95.77 E-value=0.0046 Score=47.31 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=36.8
Q ss_pred EEEeec---CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE---QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~---kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..|+|. .++|+.+.... ..+++|..|.+++.|+++| +++||+|+.+-
T Consensus 5 r~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in 55 (91)
T 2vsp_A 5 KLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVN 55 (91)
T ss_dssp EEEEEECBTTBTSCCCBCCTTCSCCBC-CCCTTSHHHHTT-CCTTCEEEEET
T ss_pred EEEEEEeCCCcccEEEEeccCCCCeEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence 455665 35788885533 3589999999999999999 99999999983
No 366
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.76 E-value=0.0064 Score=49.32 Aligned_cols=52 Identities=25% Similarity=0.500 Sum_probs=41.3
Q ss_pred hccceEEEeecC------CcceeEeec-CC--CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 82 EKYEEYEVEIEQ------PYGLKFAKG-RD--GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 82 ~~~~~~~v~l~k------Plgl~~~~~-~~--g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.+.++|.|.| ++|+.+... .+ .+++|..|.+++.|+++| +++||+|+.+-
T Consensus 12 ~~~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~In 72 (114)
T 2d8i_A 12 CPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEIN 72 (114)
T ss_dssp SCCEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHT-CCTTCCEEEES
T ss_pred ccCceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcC-CCCCCEEEEEC
Confidence 344667788863 588888643 22 489999999999999999 99999999983
No 367
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=95.75 E-value=0.009 Score=49.52 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=46.2
Q ss_pred ceEEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccc--cchhhHHHHHHH
Q 019871 85 EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPA--AEYGRTMYTIRQ 156 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~--~~~~~v~sai~~ 156 (334)
..++++|. .-+|+.+.. .+.+++|..|.++|.|+++|.+++||+|+.+- | .++ .++..+..+++.
T Consensus 27 ~~~~~~l~k~~~glG~~i~~-~~~~v~V~~V~~gspA~~aG~L~~GD~Il~Vn---G---~~v~~~s~~d~~~~l~~ 96 (126)
T 1wif_A 27 KVIQTKLTVGNLGLGLVVIQ-NGPYLQISHLINKGAAASDGILQPGDVLISVG---H---ANVLGYTLREFLKLLQN 96 (126)
T ss_dssp CEEEEEEECCTTCCCCCEEE-ETTEEEECCCCTTSSGGGCSSSCTTCBEEEES---S---SCCTTCCHHHHHHHHTS
T ss_pred ceEEEEEecCCceEeEEEEc-CCCcEEEEEECCCCHHHHcCCCCCCCEEEEEC---C---EEcCCCCHHHHHHHHhc
Confidence 44666665 345666643 46789999999999999999999999999983 2 233 244455565554
No 368
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=95.73 E-value=0.007 Score=52.95 Aligned_cols=49 Identities=33% Similarity=0.598 Sum_probs=39.7
Q ss_pred ceEEEeec----CCcceeEeec--CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE----QPYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~----kPlgl~~~~~--~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+..+|+|. .++|+.+..+ .+++++|..|.+||.|+++| +++||+|+.+-
T Consensus 84 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aG-L~~GD~Il~vn 138 (192)
T 3k1r_A 84 KLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRIN 138 (192)
T ss_dssp SCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTEEEEEET
T ss_pred ceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence 34567776 4688888544 24589999999999999999 99999999983
No 369
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=95.72 E-value=0.0088 Score=60.05 Aligned_cols=46 Identities=28% Similarity=0.572 Sum_probs=40.5
Q ss_pred EEeec--CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 88 EVEIE--QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 88 ~v~l~--kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.|.+. .++|+.+.-+++++|||..|.+||.|+++| +++||+|+.|-
T Consensus 4 ~V~l~k~~~lG~~i~gg~~~Gi~V~~V~~gspA~~aG-L~~GD~Il~VN 51 (468)
T 3shw_A 4 LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVN 51 (468)
T ss_dssp EEEEECCSSCCEEEEEETTTEEEEEEECSSSHHHHTT-CCTTEEEEEET
T ss_pred EEEEecCCccceEEEccCcCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 35555 689999977788999999999999999999 99999999984
No 370
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.70 E-value=0.014 Score=47.52 Aligned_cols=57 Identities=14% Similarity=0.257 Sum_probs=40.4
Q ss_pred CcceeEeecC-----CCceEEEeeCC--CCccccccccccCcEeeeeccccccccccccch--hhHHHHHHHh
Q 019871 94 PYGLKFAKGR-----DGGTYIDAIAP--GGSADKTGMFQVGDKVLATSAVFGTEIWPAAEY--GRTMYTIRQR 157 (334)
Q Consensus 94 Plgl~~~~~~-----~g~v~v~~~~~--~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~--~~v~sai~~R 157 (334)
++|+.+.... ..+|+|..|.+ ++.|+++| +++||+|+.+- | .++.++ ..+..++...
T Consensus 28 ~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vn---g---~~v~~~~~~dl~~~l~~~ 93 (118)
T 2yub_A 28 RRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEIN---G---TPVRTLRVEEVEDAIKQT 93 (118)
T ss_dssp SCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEES---S---SBTTTSCHHHHHHHHHCC
T ss_pred CceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEEC---C---EECCCcCHHHHHHHHHhC
Confidence 4577775432 35899999999 99999998 99999999983 2 334444 4555555443
No 371
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=95.67 E-value=0.023 Score=44.52 Aligned_cols=47 Identities=32% Similarity=0.596 Sum_probs=36.5
Q ss_pred EEEeecC---CcceeEeecCC---------C-----ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIEQ---PYGLKFAKGRD---------G-----GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~k---Plgl~~~~~~~---------g-----~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..|+|.| ++|+.+..+.+ | .+||..|.+++.|+++| +++||+|+.+-
T Consensus 8 r~v~l~k~~~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~aG-l~~GD~I~~in 71 (107)
T 3qe1_A 8 RVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVN 71 (107)
T ss_dssp EEEEEECBTTBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred EEEEEEECCCCCCEEEEcccccCCcceeccccccCCceEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 5666664 58888855421 2 24699999999999999 99999999983
No 372
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=95.35 E-value=0.022 Score=43.65 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=41.5
Q ss_pred ceEEEeecC----CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871 85 EEYEVEIEQ----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (334)
Q Consensus 85 ~~~~v~l~k----Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~ 155 (334)
+...|+|.| ++|+.+. +| +|..|.+|+.|+|+| +++||.|+.|- .+-....+..++.+.++
T Consensus 4 ~~r~v~l~k~~~g~~Gf~i~---~g--~I~~v~~gspA~~aG-l~~GD~Il~VN----G~~v~~~~~~evv~llr 68 (82)
T 1r6j_A 4 DPRTITMHKDSTGHVGFIFK---NG--KITSIVKDSSAARNG-LLTEHNICEIN----GQNVIGLKDSQIADILS 68 (82)
T ss_dssp CCEEEEEECCTTSCCCEEEE---TT--EEEEECTTSHHHHHT-CCSSEEEEEET----TEECTTCCHHHHHHHHH
T ss_pred ceEEEEEEECCCCCeEEEEE---CC--EEEEecCCCHHHHcC-CCCCCEEEEEC----CEEcCCCCHHHHHHHHh
Confidence 346788875 5777772 33 478999999999999 88999999983 22111233445555555
No 373
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=95.32 E-value=0.016 Score=46.69 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=34.8
Q ss_pred EEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 88 EVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 88 ~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.|.|. .++|+.+ ..+.+++|..|.|++.|+++| +++||+|+.+-
T Consensus 26 ~v~l~k~~~~~G~~l--~~~~~v~V~~V~~gspA~~AG-L~~GD~Il~Vn 72 (109)
T 2vsv_A 26 SIRFTAEEGDLGFTL--RGNAPVQVHFLDPYCSASVAG-AREGDYIVSIQ 72 (109)
T ss_dssp EEEECCGGGCCCEEE--ESSSSCEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred EEEEEeCCCceeEEE--eCCCCeEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 45555 4566665 234579999999999999999 99999999983
No 374
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=95.30 E-value=0.007 Score=51.88 Aligned_cols=49 Identities=37% Similarity=0.663 Sum_probs=38.5
Q ss_pred eEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|++. .++|+.+.... +.+++|..|.|+|.|+++|.+++||+|+.+-
T Consensus 101 ~~~v~l~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vn 159 (196)
T 3gsl_A 101 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVN 159 (196)
T ss_dssp EEEEEEEEBTTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred cEEEEEecCCCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEEC
Confidence 3455554 56888885432 3479999999999999999999999999983
No 375
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=95.26 E-value=0.018 Score=50.19 Aligned_cols=50 Identities=28% Similarity=0.494 Sum_probs=40.5
Q ss_pred ceEEEeec----CCcceeEeec--CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE----QPYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~----kPlgl~~~~~--~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+.|+|. .++|+.+..+ .+++++|..|.+++.|++++.+++||+|+.+-
T Consensus 7 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vn 62 (200)
T 2qt5_A 7 GSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVN 62 (200)
T ss_dssp EEEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEET
T ss_pred CCEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEEC
Confidence 44667775 5899999765 34589999999999999994499999999983
No 376
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=95.21 E-value=0.0098 Score=46.05 Aligned_cols=41 Identities=22% Similarity=0.452 Sum_probs=33.2
Q ss_pred CCcceeEeecC----CC-----ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 93 QPYGLKFAKGR----DG-----GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~~----~g-----~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|+.+.... ++ +++|..|.+++.|+++| +++||+|+.+-
T Consensus 13 ~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~in 62 (99)
T 3khf_A 13 KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHIN 62 (99)
T ss_dssp CCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred CCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 57788875432 11 56899999999999999 99999999983
No 377
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=94.13 E-value=0.0036 Score=50.47 Aligned_cols=41 Identities=34% Similarity=0.639 Sum_probs=33.1
Q ss_pred CCcceeEeecC--CCceEEEeeCCCCcccc-ccccccCcEeeeec
Q 019871 93 QPYGLKFAKGR--DGGTYIDAIAPGGSADK-TGMFQVGDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~~--~g~v~v~~~~~~~~a~~-~~~i~~gD~v~~~s 134 (334)
.++|+.+..+. +.+++|..|.++|.|++ +| +++||+|+.+-
T Consensus 39 ~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aG-L~~GD~Il~IN 82 (112)
T 2lob_A 39 EGLGISITGGKEHGVPILISEIHPGQPADRCGG-LHVGDAILAVN 82 (112)
Confidence 35778775542 24799999999999999 56 99999999983
No 378
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=94.89 E-value=0.016 Score=60.82 Aligned_cols=50 Identities=30% Similarity=0.575 Sum_probs=41.2
Q ss_pred ceEEEeec---CCcceeEeecC-CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGR-DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~-~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+...|+|. .++|+.+..++ ..+|+|..|.+||.|+++|.+++||+|+.|-
T Consensus 307 ~~~~v~l~~~~~~lG~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VN 360 (721)
T 2xkx_A 307 EPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVN 360 (721)
T ss_pred ceEEEEEEECCCCccEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEEC
Confidence 45566666 46899886554 3599999999999999999999999999983
No 379
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=94.77 E-value=0.028 Score=43.31 Aligned_cols=36 Identities=25% Similarity=0.589 Sum_probs=30.3
Q ss_pred CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|+.+. .| +|..|.++|.|+++| +++||+|+.+-
T Consensus 24 ~~lG~~~~---~G--~V~~V~~~spA~~aG-L~~GD~Il~In 59 (90)
T 1y7n_A 24 YQLGFSVQ---NG--IICSLMRGGIAERGG-VRVGHRIIEIN 59 (90)
T ss_dssp SCCCEEEE---TT--EEEEECTTSHHHHHT-CCSSCEEEEET
T ss_pred cccCeEec---CC--EEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 45777662 24 999999999999999 99999999983
No 380
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=94.75 E-value=0.054 Score=47.01 Aligned_cols=49 Identities=27% Similarity=0.489 Sum_probs=39.8
Q ss_pred eEEEeec----CCcceeEeecC----CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIE----QPYGLKFAKGR----DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~----kPlgl~~~~~~----~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+.++++ ..+|+.+.... ..+++|..|.+++.|+++|.+++||+|+.+-
T Consensus 108 ~~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vn 164 (196)
T 1p1d_A 108 TFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAID 164 (196)
T ss_dssp CEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEET
T ss_pred cEEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEEC
Confidence 3667776 35799886532 4589999999999999998899999999983
No 381
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=94.66 E-value=0.049 Score=47.33 Aligned_cols=66 Identities=24% Similarity=0.455 Sum_probs=47.5
Q ss_pred ceEEEeec---CCcceeEeecC------CCceEEEeeCCCCccccccccccCcEeeeecccccccccccc--chhhHHHH
Q 019871 85 EEYEVEIE---QPYGLKFAKGR------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAA--EYGRTMYT 153 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~--~~~~v~sa 153 (334)
..+.|++. .++|+.+..+. ..+++|..|.+++.|+++|.+++||+|+.+- ..++. ++..+..+
T Consensus 106 ~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~in------g~~v~~~~~~~~~~~ 179 (200)
T 2qt5_A 106 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVD------GIRLLGTTHAEAMSI 179 (200)
T ss_dssp EEEEEEEECBTTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEET------TEECTTCCHHHHHHH
T ss_pred eEEEEEEecCCCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC------CEECCCCCHHHHHHH
Confidence 44666654 56898886543 3589999999999999998899999999983 23344 44455555
Q ss_pred HHH
Q 019871 154 IRQ 156 (334)
Q Consensus 154 i~~ 156 (334)
+..
T Consensus 180 l~~ 182 (200)
T 2qt5_A 180 LKQ 182 (200)
T ss_dssp HHT
T ss_pred HHc
Confidence 544
No 382
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=94.63 E-value=0.038 Score=47.64 Aligned_cols=69 Identities=20% Similarity=0.421 Sum_probs=43.7
Q ss_pred CCcceeEeecC----------CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhHH
Q 019871 93 QPYGLKFAKGR----------DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLL 162 (334)
Q Consensus 93 kPlgl~~~~~~----------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V~ 162 (334)
+.+|+.+.-+. +.+++|..|.+++.|++ | +++||+|+.+- |..+-... ...+..+++...+.+.
T Consensus 2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vn---g~~v~~~~-~~~~~~~~~~~~~~v~ 75 (195)
T 2qbw_A 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQAN---GYSFINIE-HGQAVSLLKTFQNTVE 75 (195)
T ss_dssp CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEET---TEECTTCC-HHHHHHHHHHCCSEEE
T ss_pred CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEEC---CEECCCCC-HHHHHHHHHcCCCeEE
Confidence 35677775443 45999999999999999 7 99999999983 22221111 2244444444334444
Q ss_pred HHhhc
Q 019871 163 MKMQK 167 (334)
Q Consensus 163 lkLek 167 (334)
+.+.|
T Consensus 76 l~v~r 80 (195)
T 2qbw_A 76 LIIVR 80 (195)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44444
No 383
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.62 E-value=0.019 Score=44.48 Aligned_cols=46 Identities=26% Similarity=0.431 Sum_probs=36.0
Q ss_pred ceEEEeecC-----CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIEQ-----PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~k-----Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..++|+|.| ++|+.+. .+.+++|..|.+++.|+ +| +++||+|+.+-
T Consensus 8 ~~~~v~l~~~~~~~~~G~~l~--~~~~~~V~~V~~~spA~-ag-L~~GD~Il~in 58 (96)
T 2edv_A 8 VRHTVKIDKDTLLQDYGFHIS--ESLPLTVVAVTAGGSAH-GK-LFPGDQILQMN 58 (96)
T ss_dssp EEEEEEECCCSSSCSCSBCCC--SSSSCBCCCBCSSSSST-TT-SCTTCBEEEES
T ss_pred ccEEEEEEECCCCCcccEEEe--cCCCeEEEEECCCCchh-hC-CCCCCEEEEEC
Confidence 457788874 4566663 25689999999999996 66 99999999983
No 384
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=94.58 E-value=0.012 Score=57.28 Aligned_cols=50 Identities=20% Similarity=0.460 Sum_probs=39.9
Q ss_pred ceEEEeecC----CcceeEeecCCC----ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIEQ----PYGLKFAKGRDG----GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~k----Plgl~~~~~~~g----~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.-+|.|.| ++|+.+....+| +++|..|.|||.|+++|.+++||+|+.+-
T Consensus 204 ~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~Vn 261 (388)
T 3suz_A 204 NCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSIN 261 (388)
T ss_dssp CCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEET
T ss_pred cceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEEC
Confidence 344677764 699999775555 69999999999999999999999999984
No 385
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=94.47 E-value=0.031 Score=44.80 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=32.4
Q ss_pred CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 93 QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|+.+. .+.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 26 ~~~G~~l~--~~~~v~V~~V~~~spA~~aG-L~~GD~Il~In 64 (111)
T 1vae_A 26 GDLGFTLR--GNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQ 64 (111)
T ss_dssp SCCSCCEE--SSSSCEECCCCTTSSHHHHH-CCTTCEEEEET
T ss_pred CcccEEEe--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEEC
Confidence 45677662 24579999999999999999 99999999983
No 386
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=94.37 E-value=0.038 Score=57.96 Aligned_cols=52 Identities=33% Similarity=0.585 Sum_probs=43.0
Q ss_pred ccceEEEeec---CCcceeEeecC-------CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 83 KYEEYEVEIE---QPYGLKFAKGR-------DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 83 ~~~~~~v~l~---kPlgl~~~~~~-------~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++.++|+|. .++|+.+.-+. +.++||..|.+||-|+++|.+++||+|+.|-
T Consensus 57 ~~~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vn 118 (721)
T 2xkx_A 57 EMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 118 (721)
T ss_pred CceEEEEEEEeCCCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEEC
Confidence 3456788887 57888886443 4589999999999999999999999999984
No 387
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=94.35 E-value=0.046 Score=49.22 Aligned_cols=47 Identities=17% Similarity=0.527 Sum_probs=37.2
Q ss_pred EEEeec---CCcceeEeecCC-CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 87 YEVEIE---QPYGLKFAKGRD-GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 87 ~~v~l~---kPlgl~~~~~~~-g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
-.|+|. ..+|+.+..+.+ ++++|..|.+|+.|+++| |++||+|+.|-
T Consensus 11 r~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VN 61 (216)
T 2krg_A 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVN 61 (216)
T ss_dssp EEEEEECCSSSSCEEECCCSSSCSCBEEEECTTSHHHHHT-CCTTCBCCEET
T ss_pred EEEEEEeCCCCceEEEEecCCCCCeEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence 445555 457788754432 389999999999999999 99999999983
No 388
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=94.20 E-value=0.089 Score=43.37 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=33.6
Q ss_pred CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
..+++|..|.+++.|+ +| +++||+|+.+- ..++.++..+..++..
T Consensus 56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~in------G~~v~~~~~l~~~l~~ 100 (134)
T 2l97_A 56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKVD------DKEIASSTDLQSALYN 100 (134)
T ss_dssp CSCEEEEECSTTSGGG-TT-SCSSCEEEEET------TEECCCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchH-HC-CCCCCEEEEEC------CEEcCCHHHHHHHHHh
Confidence 4689999999999999 88 99999999983 2334444445554443
No 389
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=94.02 E-value=0.087 Score=41.02 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=34.3
Q ss_pred CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 103 RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 103 ~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
...||+|..|.+++.|++ | +++||+|+.+- ..++.++..+..++..
T Consensus 5 ~~~Gv~V~~V~~~spA~~-G-L~~GD~I~~In------g~~v~~~~dl~~~l~~ 50 (100)
T 3i18_A 5 TYDGVYVMSVKDDVPAAD-V-LHAGDLITEID------GNAFKSSQEFIDYIHS 50 (100)
T ss_dssp CCCCEEEEEECTTSGGGG-T-CCTTCEEEEET------TBCCSSHHHHHHHHHT
T ss_pred eCCCEEEEEeCCCCchHH-C-CCCCCEEEEEC------CEECCCHHHHHHHHHh
Confidence 457999999999999995 6 99999999983 2344555555555553
No 390
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.87 E-value=0.1 Score=55.33 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=51.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
-.+.-+...|+|+.|+.+-.+|+..-|.. -..||.+|-||..+|+++.||-.|.-+
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPse---F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELALDS---FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCchh---hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44666778999999999999999999997 579999999999999999999998877
No 391
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=93.07 E-value=0.1 Score=40.25 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=33.5
Q ss_pred CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
..+++|..|.+++.|++ | +++||+|+.+- ..++.++..+..++..
T Consensus 4 ~~Gv~V~~V~~~spA~~-G-L~~GD~Il~In------G~~v~~~~~l~~~l~~ 48 (94)
T 2kl1_A 4 AKGVYVMSVLPNMPAAG-R-LEAGDRIAAID------GQPINTSEQIVSYVRE 48 (94)
T ss_dssp CCCEECCCCCTTSTTBT-T-BCTTCEEEEET------TBCCCCHHHHHHHHHH
T ss_pred CCcEEEEEECCCChHHh-C-CCCCCEEEEEC------CEECCCHHHHHHHHHh
Confidence 45799999999999998 7 99999999983 2334445555555544
No 392
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=92.96 E-value=0.13 Score=48.21 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=39.9
Q ss_pred cceeEeec-----------CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 95 YGLKFAKG-----------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 95 lgl~~~~~-----------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
+||.+..- ...+++|..|.+++.|+++| +++||+|+.+- | -++.++..+..++..
T Consensus 223 lGi~~~~~~~~~~~~~g~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~in---g---~~v~~~~~l~~~l~~ 288 (318)
T 1te0_A 223 IGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAG-IQVNDLIISVD---N---KPAISALETMDQVAE 288 (318)
T ss_dssp CCEEEEECSCCCSSSSCSSSCCCEEEEEECTTSTTTTTC-CCTTCCEEEET---T---EECCCHHHHHHHHHT
T ss_pred ceeEeeecchhHHHhccCCCCCcEEEEEeCCCChHHHCC-CCCCCEEEEEC---C---EEcCCHHHHHHHHHh
Confidence 67777541 24689999999999999999 99999999983 2 234444445554443
No 393
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=92.93 E-value=2.1 Score=42.56 Aligned_cols=70 Identities=4% Similarity=-0.084 Sum_probs=57.8
Q ss_pred hccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 211 QKERREQDLREGLQLYRTGKYEVAREKFESVLGS--KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 211 l~~~~~~~~nlG~al~~~g~yeeAl~~fekALel--dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
+.|+....-.+-..+.+.|++++|++.|++..+. .|+ ...|..+=.+|.+.|++++|++.|++..+.|..
T Consensus 101 ~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~ 172 (501)
T 4g26_A 101 VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR----LRSYGPALFGFCRKGDADKAYEVDAHMVESEVV 172 (501)
T ss_dssp CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4465555557778899999999999999998854 566 468888888999999999999999999988754
No 394
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=92.45 E-value=0.18 Score=47.32 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=40.6
Q ss_pred cceeEeec-CCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871 95 YGLKFAKG-RDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (334)
Q Consensus 95 lgl~~~~~-~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~ 155 (334)
+|+.+... ...+++|..|.+++.|+++| +++||+|+.+- .-++.++..+...+.
T Consensus 231 lGi~~~~~~~~~g~~V~~v~~~spA~~aG-l~~GD~I~~in------g~~v~~~~~l~~~l~ 285 (324)
T 1y8t_A 231 LGVQVTNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVD------DRPINSADALVAAVR 285 (324)
T ss_dssp CCEEEESCSSSSSEEEEEECTTSTTTTTT-CCTTCEEEEET------TEECCSHHHHHHHHH
T ss_pred cceEeeeccCCCceEEEEECCCChHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHH
Confidence 78888543 35689999999999999999 99999999983 233444555555454
No 395
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=92.35 E-value=0.4 Score=49.98 Aligned_cols=76 Identities=7% Similarity=-0.021 Sum_probs=66.6
Q ss_pred HHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHH-HHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871 203 QNYMKKKEQKERREQDL-REGLQLYRTGKYEVAR-EKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (334)
Q Consensus 203 ~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl-~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe 280 (334)
..|.+++...|..+..+ ..+.-+...|+.++|+ ..|++|+...|.+ ...|...|......|++++|.+.|+++++
T Consensus 330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s---~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS---AVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56888888888877765 6666677889999998 9999999999987 57899999999999999999999999998
Q ss_pred c
Q 019871 281 A 281 (334)
Q Consensus 281 l 281 (334)
.
T Consensus 407 ~ 407 (679)
T 4e6h_A 407 R 407 (679)
T ss_dssp H
T ss_pred H
Confidence 6
No 396
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=92.26 E-value=0.066 Score=55.15 Aligned_cols=39 Identities=26% Similarity=0.435 Sum_probs=34.3
Q ss_pred CcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 94 PYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 94 Plgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
-+|+.+..+ .|+|.|..|.++|.|+++| |++||+|+++-
T Consensus 486 ~lG~~~~~~-~~gv~V~~V~~~spA~~AG-L~~GD~I~aIn 524 (597)
T 4fgm_A 486 NFGAKYKAS-PQGLDVLNVYHDESAYHAG-LSAGDKIIAID 524 (597)
T ss_dssp CCSEEEEEE-TTEEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred ccceEEecc-CCeEEEEEeCCCChHHHCC-CCCCCEEEEEC
Confidence 488888654 5689999999999999999 99999999983
No 397
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.21 E-value=0.03 Score=45.49 Aligned_cols=29 Identities=21% Similarity=0.564 Sum_probs=27.0
Q ss_pred CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 61 ~gv~V~~V~~~spA~~aG-L~~GD~I~~in 89 (126)
T 2yuy_A 61 DTIFVKQVKEGGPAFEAG-LCTGDRIIKVN 89 (126)
T ss_dssp CCCCBCCCCSSSHHHHHT-CCSSCCCCEET
T ss_pred CCEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence 569999999999999999 99999999983
No 398
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=92.07 E-value=0.81 Score=47.66 Aligned_cols=128 Identities=17% Similarity=0.064 Sum_probs=85.8
Q ss_pred HHHHHHHHhh-ccC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 202 MQNYMKKKEQ-KER-REQDLREGLQLYRTG-KYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 202 ~~~y~~~iel-~~~-~~~~~nlG~al~~~g-~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
..-+.++++. .+. .......+..-++.+ +++.|...|+++++..|++ +..|...+.....+|+.+.|-..|++|
T Consensus 454 R~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~---~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 454 RKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD---GEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc---hHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3445555554 222 222234455455554 5999999999999999998 456666677777899999999999999
Q ss_pred HHcCCC--CHH-HHhcChhhHHHhc-ChHHHHHHHHHHHhhhchhHHHHHHHhhcccC
Q 019871 279 LLAGYE--DFK-RVRTDPDLENLRA-SEEFDVLLKRFDESFINENAINAIKSLFGLLD 332 (334)
Q Consensus 279 Ielgp~--~~~-~i~~Dpdl~~Lr~-dp~F~~lL~~~~e~~~~~~ai~~~k~~~~~~~ 332 (334)
+...|+ ... ....=-.|+.-.. ......+.+++.+.+-.+.-++.+.+=|++++
T Consensus 531 l~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~~~~ 588 (679)
T 4e6h_A 531 IDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKVLD 588 (679)
T ss_dssp TTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTCBTT
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCc
Confidence 999883 222 1111122332222 34567777888888888888888888887664
No 399
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=92.05 E-value=0.14 Score=40.42 Aligned_cols=30 Identities=27% Similarity=0.652 Sum_probs=27.6
Q ss_pred CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+++|..|.+++.|+++| +++||+|+.+-
T Consensus 34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~in 63 (112)
T 2p3w_A 34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVN 63 (112)
T ss_dssp CSSEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred CCCeEEEEECCCChHHHCC-CCCCCEEEEEC
Confidence 4689999999999999998 99999999984
No 400
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=91.92 E-value=0.12 Score=40.07 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=33.9
Q ss_pred eEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhh
Q 019871 107 TYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRV 158 (334)
Q Consensus 107 v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~ 158 (334)
..|..|.+++.|+++| +++||+|+.+- ..++.++..+..++....
T Consensus 4 p~V~~V~~~spA~~aG-l~~GD~I~~in------g~~v~~~~d~~~~l~~~~ 48 (95)
T 3id1_A 4 PVVGEIAANSIAAEAQ-IAPGTELKAVD------GIETPDWDAVRLQLVDKI 48 (95)
T ss_dssp CBEEEECTTSHHHHTT-CCTTCEEEEET------TEECSSHHHHHHHHHHTT
T ss_pred CEEEeeCCCCHHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHHHhc
Confidence 4688999999999999 99999999983 234455555666665544
No 401
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.74 E-value=0.39 Score=39.79 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALeldP~~ 248 (334)
.-.|.+|..+|++|+|++|+.+++..|+.+|++
T Consensus 75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 75 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 445799999999999999999999999999998
No 402
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=91.63 E-value=0.089 Score=40.59 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=31.2
Q ss_pred ceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
|++|..|.+++.|++ | +++||+|+.+- | -++.++..+..++..
T Consensus 2 Gv~V~~V~~~spA~~-G-L~~GD~I~~In---G---~~v~~~~~l~~~l~~ 44 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-K-IEVGDKIISAD---G---KNYQSAEKLIDYISS 44 (91)
T ss_dssp CSSCCCCCCSSCCSS-C-CCSSCEEEEET---T---BCCSSHHHHHHHHSS
T ss_pred ceEEEEECCCChHHH-c-CCCCCEEEEEC---C---EECCCHHHHHHHHHc
Confidence 578999999999998 7 99999999983 2 233444444444443
No 403
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=91.44 E-value=0.13 Score=38.87 Aligned_cols=40 Identities=28% Similarity=0.236 Sum_probs=30.2
Q ss_pred CCcceeEeecCCC---ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 93 QPYGLKFAKGRDG---GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 93 kPlgl~~~~~~~g---~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+-+|+.-.. .+| ++.|..+.|++.|+++| +++||+|+.+-
T Consensus 5 ~~~~~~p~~-~~g~~~G~~V~~~~~~s~A~~aG-l~~GD~I~~in 47 (87)
T 2i6v_A 5 QYVRLSQVK-RDDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALN 47 (87)
T ss_dssp GTEEEEEEE-ETTEEEEEEEEECSCHHHHHHTT-CCTTCEEEEET
T ss_pred hccceEEEe-eCCeEEEEEEEeCCCCCHHHHCC-CCCCCEEEEEC
Confidence 445555533 244 67788888888889999 99999999983
No 404
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=91.43 E-value=0.17 Score=44.64 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=33.5
Q ss_pred CcceeEee-----cCCCceEEEeeCCCCcccccccccc-CcEeeeec
Q 019871 94 PYGLKFAK-----GRDGGTYIDAIAPGGSADKTGMFQV-GDKVLATS 134 (334)
Q Consensus 94 Plgl~~~~-----~~~g~v~v~~~~~~~~a~~~~~i~~-gD~v~~~s 134 (334)
.+|+.+.. ....+|+|..|.+++.|+++| +++ ||+|+.+-
T Consensus 96 ~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~in 141 (209)
T 3rle_A 96 LLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGAD 141 (209)
T ss_dssp SSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEES
T ss_pred ccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECC
Confidence 57888853 123689999999999999999 999 99999983
No 405
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.16 E-value=0.57 Score=47.14 Aligned_cols=62 Identities=8% Similarity=-0.015 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp 283 (334)
..+|+...-...+..|...|.+|+.+.|++ ...|+++|......|+.-+|+-+|-|++-...
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~---G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~ 217 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSN---GQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTB---SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCC---CchHHHHHHHHhcccccHHHHHHHHHHHhcCC
Confidence 389999988889999999999999999999 57999999999999999999999999987644
No 406
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.04 E-value=0.59 Score=45.02 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe 280 (334)
.++..+...|++++|+..+.+++..+|-+ -.+|..+-.+|...|+..+|+..|+++-.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~---E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYR---EPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66778889999999999999999999998 36899999999999999999999998744
No 407
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=90.99 E-value=0.23 Score=41.90 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=35.0
Q ss_pred eEEEeec----CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 86 EYEVEIE----QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 86 ~~~v~l~----kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+++|. ..+|+.+. +| +|..|.+++.|+++| +++||+|+.+-
T Consensus 89 ~~~v~l~~~~~~~lG~~~~---~g--~v~~v~~~s~a~~aG-l~~GD~I~~in 135 (166)
T 1w9e_A 89 ERTITMHKDSTGHVGFIFK---NG--KITSIVKDSSAARNG-LLTEHNICEIN 135 (166)
T ss_dssp CEEEEEECCTTSCCSEEEE---TT--EEEEECTTSHHHHTT-CCSSEEEEEET
T ss_pred cEEEEEecCCCCcEeEEEe---CC--EEEEEccCCHHHHcC-CCCCCEEEEEC
Confidence 3566665 45788875 34 899999999999999 99999999973
No 408
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=90.40 E-value=0.27 Score=46.95 Aligned_cols=46 Identities=20% Similarity=0.435 Sum_probs=35.4
Q ss_pred CCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHH
Q 019871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQ 156 (334)
Q Consensus 104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~ 156 (334)
..|++|..|.+++.|+++| +++||+|+.+- .-++.++..+...+..
T Consensus 262 ~~G~~V~~V~~~spA~~aG-L~~GDvI~~in------g~~v~~~~~l~~~l~~ 307 (345)
T 3stj_A 262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLN------GKPLNSFAELRSRIAT 307 (345)
T ss_dssp CSSEEEEEECTTSHHHHHT-CCTTCEECEET------TEECSCHHHHHHHHHT
T ss_pred CceEEEEEeccCChHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHHh
Confidence 3689999999999999999 99999999983 2334555555555554
No 409
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=90.33 E-value=0.2 Score=48.37 Aligned_cols=40 Identities=28% Similarity=0.481 Sum_probs=34.2
Q ss_pred CcceeEeec--CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 94 PYGLKFAKG--RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 94 Plgl~~~~~--~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
-+|+.+... .+++++|..|.+++.|+++| +++||+|+.+-
T Consensus 86 giG~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~In 127 (388)
T 1fc6_A 86 GVGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVD 127 (388)
T ss_dssp BCSEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred EEEEEEEEeecCCCcEEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence 367877653 26799999999999999999 99999999984
No 410
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=90.21 E-value=0.39 Score=39.23 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=33.3
Q ss_pred cCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871 102 GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (334)
Q Consensus 102 ~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~ 155 (334)
...+++.|..|.+++.|+++ +++||+|+.+- | .++.++..+..++.
T Consensus 22 ~~~~gv~V~~V~~~spA~~a--L~~GD~Il~In---G---~~v~~~~dl~~~l~ 67 (125)
T 2hga_A 22 HQPDGVQIDSVVPGSPASKV--LTPGLVIESIN---G---MPTSNLTTYSAALK 67 (125)
T ss_dssp -CCCCEEEEEECSSSGGGGT--SCTTCEEEEET---T---EECSSHHHHHHHHT
T ss_pred CCCCceEEEEECCCChHHHh--cCCCCEEEEEC---C---EEcCCHHHHHHHHH
Confidence 35678999999999999987 99999999983 2 33444444444444
No 411
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=89.73 E-value=0.15 Score=38.52 Aligned_cols=44 Identities=18% Similarity=0.445 Sum_probs=32.5
Q ss_pred eEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHh
Q 019871 107 TYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQR 157 (334)
Q Consensus 107 v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R 157 (334)
++|..|.+++.|+++| +++||+|+.+- ..++.++..+..++...
T Consensus 6 ~~V~~v~~~spA~~aG-l~~GD~I~~in------g~~v~~~~~~~~~l~~~ 49 (91)
T 2zpm_A 6 PVLENVQPNSAASXAG-LQAGDRIVXVD------GQPLTQWVTFVMLVRDN 49 (91)
T ss_dssp CBCSEECTTSHHHHTT-CCTTCEEEEET------TEECCCHHHHHHHHHHC
T ss_pred eEEEEECCCChHHhcC-CCCCCEEEEEC------CeEcCCHHHHHHHHhcC
Confidence 5688899999999998 99999999983 23444555555555543
No 412
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=89.52 E-value=0.16 Score=44.87 Aligned_cols=29 Identities=10% Similarity=0.220 Sum_probs=27.0
Q ss_pred CceEEEeeCCCCccccccccccC-cEeeeec
Q 019871 105 GGTYIDAIAPGGSADKTGMFQVG-DKVLATS 134 (334)
Q Consensus 105 g~v~v~~~~~~~~a~~~~~i~~g-D~v~~~s 134 (334)
.|++|..|.|++-|+++| +++| |+|+.+-
T Consensus 16 ~G~~V~~V~~~SpA~~AG-L~~G~D~I~~in 45 (209)
T 3rle_A 16 EGYHVLRVQENSPGHRAG-LEPFFDFIVSIN 45 (209)
T ss_dssp EEEEEEEECTTSHHHHTT-CCTTTEEEEEET
T ss_pred CEEEEEEECCCCHHHHCC-CCcCCeEEEEEC
Confidence 489999999999999999 9999 9999984
No 413
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.29 E-value=0.37 Score=40.45 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (334)
Q Consensus 215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~ 248 (334)
.+-.|.++..++++|+|++|.++.+..|+.+|+|
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 3446799999999999999999999999999998
No 414
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=88.62 E-value=0.38 Score=37.59 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=23.6
Q ss_pred ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
++.|....|++.|+++| +++||+|+.+-
T Consensus 38 G~~V~~~~pas~A~~aG-l~~GDvI~~in 65 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIG-LQDGDMAVALN 65 (105)
T ss_dssp EEEEEECSCTHHHHHHT-CCTTCEEEEET
T ss_pred EEEEecCCCCCHHHHcC-CCCCCEEEEEC
Confidence 56677777877789998 99999999983
No 415
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=88.60 E-value=1.9 Score=38.29 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcC--CCC----------C-cchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871 215 REQDLREGLQLYRTGKYEVAREKFESVL--GSK--PTP----------E-ESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (334)
Q Consensus 215 ~~~~~nlG~al~~~g~yeeAl~~fekAL--eld--P~~----------~-e~~~a~yNlA~ay~~lG~~eeAl~~lekAI 279 (334)
.-..+.+..++.++++|..|+.+.+..| +++ |+. + +.---+.-+|..+.+.|..+|||.++.+..
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 3445689999999999999999999999 333 332 1 112345567899999999999999999999
Q ss_pred HcCCC
Q 019871 280 LAGYE 284 (334)
Q Consensus 280 elgp~ 284 (334)
...|-
T Consensus 142 ~~~~l 146 (242)
T 3kae_A 142 GKSFL 146 (242)
T ss_dssp HHCCC
T ss_pred CCccc
Confidence 98884
No 416
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=88.43 E-value=0.14 Score=50.42 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=42.7
Q ss_pred CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhHHHHhhcc
Q 019871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQKR 168 (334)
Q Consensus 105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V~lkLek~ 168 (334)
.+++|..|.+++.|+++| +++||+|+.+- ..++.++..+..++....+.+.+...|.
T Consensus 363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vn------g~~v~~~~~~~~~l~~~~~~v~l~v~R~ 419 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVN------RDRVNSIAEMRKVLAAKPAIIALQIVRG 419 (436)
T ss_pred CCEEEEEeCCCCHHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHHhCCCeEEEEEEEC
Confidence 489999999999999999 99999999983 3455666666666666555555444443
No 417
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.42 E-value=0.44 Score=40.48 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871 215 REQDLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (334)
Q Consensus 215 ~~~~~nlG~al~~~g~yeeAl~~fekALeldP~~ 248 (334)
.+-.|.++..+|++|+|++|.++.+..|+.+|+|
T Consensus 77 RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 77 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3445799999999999999999999999999998
No 418
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=87.60 E-value=0.46 Score=45.15 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=39.7
Q ss_pred cceeEeecCC------CceEEEeeCCCCcccccccccc-----------CcEeeeeccccccccccccchhhHHHHHH
Q 019871 95 YGLKFAKGRD------GGTYIDAIAPGGSADKTGMFQV-----------GDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (334)
Q Consensus 95 lgl~~~~~~~------g~v~v~~~~~~~~a~~~~~i~~-----------gD~v~~~sa~fg~~~w~~~~~~~v~sai~ 155 (334)
|||.+..... .|++|..|.+++.|+++| +++ ||+|+++- .-++.++..+..++.
T Consensus 235 lGi~~~~~~~~~~~~~~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~in------g~~v~~~~dl~~~l~ 305 (348)
T 3qo6_A 235 LGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVN------GTKVSNGSDLYRILD 305 (348)
T ss_dssp CCCEECCTTTTTTTTCSSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEET------TBCCSSSHHHHHHHT
T ss_pred cCcEEccchhhhhcCCceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEEC------CEEeCCHHHHHHHHH
Confidence 7887754321 489999999999999999 888 99999983 234455555556554
No 419
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=87.46 E-value=0.11 Score=51.51 Aligned_cols=65 Identities=17% Similarity=0.407 Sum_probs=0.0
Q ss_pred ceeEee-cCCCceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHHHhhhhHHHHhhc
Q 019871 96 GLKFAK-GRDGGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRVGPLLMKMQK 167 (334)
Q Consensus 96 gl~~~~-~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~~R~G~V~lkLek 167 (334)
|+.+.. ....+++|..|.+++.|+++| +++||+|+.+- ..++.++..+..++....+.+.+...|
T Consensus 373 G~~l~~~~~~~gv~V~~V~~gspA~~aG-L~~GDiI~~vn------g~~v~~~~~l~~~l~~~~~~v~l~v~R 438 (448)
T 1ky9_A 373 GAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGAN------QQAVKNIAELRKVLDSKPSVLALNIQR 438 (448)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ceEeeccCCCCeEEEEEecCCCHHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHHcCCCeEEEEEEE
Confidence 666532 134689999999999999999 99999999983 234444454555555444455554443
No 420
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.14 E-value=1.2 Score=38.66 Aligned_cols=107 Identities=14% Similarity=0.051 Sum_probs=70.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHH--H--
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEE------SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKR--V-- 289 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e------~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~--i-- 289 (334)
.....++..|.|+.|+-..+.++.+..++++ ...+++..|.++...++|..|+..|++||...-.-.+. .
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 5566789999999999999998866433321 13578999999999999999999999998763321110 0
Q ss_pred -----hcChhhHHHhcC--hHHHHHHHHHHHhhhchhHHHHHHHh
Q 019871 290 -----RTDPDLENLRAS--EEFDVLLKRFDESFINENAINAIKSL 327 (334)
Q Consensus 290 -----~~Dpdl~~Lr~d--p~F~~lL~~~~e~~~~~~ai~~~k~~ 327 (334)
..-|.-..+..+ =+|+ +-.+|.+.-..+.||..+.+|
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkyk-ia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYK-LAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------CCCCHHHHHHH-HHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccCCCcccccccchHHHHHH-HHHHHHHHCCHHHHHHHHhcC
Confidence 000100001111 1355 557787877888888887765
No 421
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=86.35 E-value=0.71 Score=45.32 Aligned_cols=29 Identities=24% Similarity=0.649 Sum_probs=27.3
Q ss_pred CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.|++|..|.+++.|+++| +++||+|+.+-
T Consensus 263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~vn 291 (436)
T 4a8c_A 263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLN 291 (436)
T ss_pred cceEEEEECCCChHHHCC-CCCCCEEEEEC
Confidence 589999999999999999 99999999983
No 422
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=86.34 E-value=0.61 Score=46.11 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=34.3
Q ss_pred CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (334)
Q Consensus 105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~ 155 (334)
.+++|..|.+++.|+++| +++||+|+.+- | -++.++..+..++.
T Consensus 282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vn---G---~~v~~~~~l~~~l~ 325 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAG-LKAGDIITQIN---D---TKITQATQVKTTIS 325 (451)
T ss_dssp CCEEEEEECTTSHHHHHT-CCTTCEEEEET---T---EECCSHHHHHHHHH
T ss_pred ceEEEEecCCCChHHHcC-CCCCCEEEEEC---C---EEcCCHHHHHHHHH
Confidence 689999999999999999 99999999983 2 23445555555554
No 423
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=86.34 E-value=0.45 Score=46.60 Aligned_cols=28 Identities=25% Similarity=0.557 Sum_probs=26.1
Q ss_pred ceEEEeeCCCCccccccccccCcEeeeec
Q 019871 106 GTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 106 ~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.++|..|.||+.|+++| +++||+|+.+-
T Consensus 91 ~~~V~~V~~gsPA~~AG-L~~GD~I~~In 118 (403)
T 3k50_A 91 NALISYVVPGSPAEEAG-LQRGHWIMMMN 118 (403)
T ss_dssp EEEEEEECTTSHHHHTT-CCTTCEEEEET
T ss_pred eEEEEEeCCCChHHHcC-CCCCCEEEEEC
Confidence 48899999999999999 99999999984
No 424
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.16 E-value=2.4 Score=42.79 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=35.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 223 LQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 223 ~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
....+.|++++|++... .+ ++ ...|-++|..+.+.|+++.|.++|.++
T Consensus 660 ~~~l~~~~~~~A~~~~~---~~--~~---~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLT---DE--SA---EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHTCHHHHHHHHT---TC--CC---HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHH---hh--Cc---HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34467788888887732 22 22 468888998888999999999888886
No 425
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=86.06 E-value=0.5 Score=44.44 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=27.7
Q ss_pred CCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
..+++|..|.+++.|+++| +++||+|+.+-
T Consensus 255 ~~gv~V~~V~~~spA~~aG-l~~GDvI~~in 284 (325)
T 1lcy_A 255 QHGVLIHKVILGSPAHRAG-LRPGDVILAIG 284 (325)
T ss_dssp SSCEEEEEECTTSHHHHHT-CCTTCEEEEET
T ss_pred CCCeEEEEeCcCChHHHCC-CCCCCEEEEEC
Confidence 3589999999999999999 99999999984
No 426
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=85.38 E-value=1.3 Score=35.88 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=33.9
Q ss_pred ceEEEeec---CCcceeEeecCCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 85 EEYEVEIE---QPYGLKFAKGRDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 85 ~~~~v~l~---kPlgl~~~~~~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+.++|+|. +.+|+++..+. .+.+|..|.+. +..++ +++||+|+.+-
T Consensus 12 ~~~~V~L~Kg~~G~GFsI~~~~-~g~~V~~I~~~--~~~aG-L~~GD~Il~VN 60 (113)
T 3soe_A 12 LLVTIPLIKGPKGFGFAIADSP-TGQKVKMILDS--QWCQG-LQKGDIIKEIY 60 (113)
T ss_dssp EEEEEEEECBTTBSSEEEEEET-TEEEEEEESCG--GGSTT-CCTTCEEEEET
T ss_pred CEEEEEEEECCCcccEEEeCCC-CCcEEEEecCh--HHhCC-CCCCCEEEEEC
Confidence 55788887 56888885433 36779888883 45555 99999999983
No 427
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.98 E-value=2.2 Score=39.81 Aligned_cols=61 Identities=10% Similarity=0.009 Sum_probs=50.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 224 QLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 224 al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.+++.|+.++|++.....++.+|.+.. .-..+--.++..|+++.|++-|+-+.+++|+...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~---~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDAS---LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 567899999999999999999999953 4444444566679999999999999999998554
No 428
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=82.70 E-value=16 Score=32.33 Aligned_cols=100 Identities=26% Similarity=0.367 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC-CHHHHhcChhhHH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE-DFKRVRTDPDLEN 297 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~-~~~~i~~Dpdl~~ 297 (334)
.-++..+|-.|+|..|+-.+. .++- ..+.|..+.||-++.++..|+.++++-|+-.-+ ++ ..|.+++.
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~---~lNT-----~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~---~~d~~~~~ 105 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLH---KLNT-----CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDP---DVDARIQE 105 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH---TCCB-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCC---CCCHHHHT
T ss_pred hhhhhhhhhcchHhHHHHHHH---hcch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc---ccccccce
Confidence 478999999999999987632 2322 568888999999999999999999999943322 00 01222222
Q ss_pred H---hcChH-HHHHHH-HHHHhhhchhHHHHHHHhhc
Q 019871 298 L---RASEE-FDVLLK-RFDESFINENAINAIKSLFG 329 (334)
Q Consensus 298 L---r~dp~-F~~lL~-~~~e~~~~~~ai~~~k~~~~ 329 (334)
+ ..|.+ |..++. -+......+.||..|+--||
T Consensus 106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 2 12444 444443 35666788999999988776
No 429
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=82.40 E-value=0.26 Score=46.46 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=0.0
Q ss_pred CCceEEEeeCCCCccccccccccCcEeeee
Q 019871 104 DGGTYIDAIAPGGSADKTGMFQVGDKVLAT 133 (334)
Q Consensus 104 ~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~ 133 (334)
..+++|..|.+++.|+++| +++||+|+.+
T Consensus 253 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~i 281 (332)
T 3num_A 253 ISGAYIIEVIPDTPAEAGG-LKENDVIISI 281 (332)
T ss_dssp ------------------------------
T ss_pred CCceEEEEeccCCChHHcC-CCCCCEEEEE
Confidence 3589999999999999999 9999999998
No 430
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=82.40 E-value=2.6 Score=36.27 Aligned_cols=60 Identities=17% Similarity=0.089 Sum_probs=52.8
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 225 LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 225 l~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
+...++.++|-+.|+.++.+...+ +..|..-|-.-.++|+...|.+-|.+||.++|....
T Consensus 70 ~~ei~D~d~aR~vy~~a~~~hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 70 LKAIQEPDDARDYFQMARANCKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHHHCGGGCHHHHHHHHHHCTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 356699999999999999986666 678888888889999999999999999999998554
No 431
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=82.09 E-value=12 Score=36.92 Aligned_cols=69 Identities=12% Similarity=-0.048 Sum_probs=56.7
Q ss_pred hccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871 211 QKERREQDLREGLQLYRTGKYEVAREKFESVLGS--KPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 211 l~~~~~~~~nlG~al~~~g~yeeAl~~fekALel--dP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp 283 (334)
+.|+....-.+-..+.+.|++++|++.|++..+. .|+ ...|..+-.+|.+.|+.++|++.|++.-+.+-
T Consensus 136 ~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd----~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 136 IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE----EPELAALLKVSMDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC
Confidence 4565555556777889999999999999999854 566 47899999999999999999999999876653
No 432
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=82.08 E-value=7.4 Score=38.32 Aligned_cols=53 Identities=8% Similarity=-0.063 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHH
Q 019871 231 YEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFK 287 (334)
Q Consensus 231 yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~ 287 (334)
.+.....|++++...|.. +..|++-|..+...|+.++|...|++|+.. |.+..
T Consensus 195 ~~Rv~~~ye~al~~~p~~---~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~ 247 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYA---EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF 247 (493)
T ss_dssp HHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH
T ss_pred HHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH
Confidence 456788999999999987 679999999999999999999999999999 98654
No 433
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=80.64 E-value=9.8 Score=41.92 Aligned_cols=61 Identities=13% Similarity=-0.125 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-----hcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 220 REGLQLYRTGKYEVAREKFESVL-----GSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekAL-----eldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
.+=..+.+.|+.++|.+.|++.- ...|+ ...|.-+=..|.+.|++++|++.|++-.+.|..
T Consensus 132 aLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd----vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~ 197 (1134)
T 3spa_A 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT----LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197 (1134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC----HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 55567788888888888886643 24566 467777888888888888888888888777653
No 434
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.54 E-value=23 Score=33.70 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-------------------cchHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPE-------------------ESSVASYNVACCYSKLNQVKAGLSALEDAL 279 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~-------------------e~~~a~yNlA~ay~~lG~~eeAl~~lekAI 279 (334)
...|......|+.++|+..+++|+++-.... .+..+...++.++..+|++++|+..+++++
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~ 198 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT 198 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3556666678999999999999998853321 012344567778889999999999999999
Q ss_pred HcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHH
Q 019871 280 LAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDE 313 (334)
Q Consensus 280 elgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e 313 (334)
..+|-+-... .- -+..+...++..++++.|++
T Consensus 199 ~~~P~~E~~~-~~-lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 199 FEHPYREPLW-TQ-LITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHSTTCHHHH-HH-HHHHHHTTTCHHHHHHHHHH
T ss_pred HhCCCCHHHH-HH-HHHHHHHcCCHHHHHHHHHH
Confidence 9999754311 11 12234445566666655544
No 435
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=79.68 E-value=0.37 Score=46.76 Aligned_cols=26 Identities=27% Similarity=0.616 Sum_probs=0.0
Q ss_pred EEEeeCCCCccccccccccCcEeeeec
Q 019871 108 YIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 108 ~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
+|..|.+||.|+++| +++||+|+.+-
T Consensus 318 ~I~~V~~gs~A~~aG-L~~GD~Il~VN 343 (388)
T 3suz_A 318 IICSLMRGGIAERGG-VRVGHRIIEIN 343 (388)
T ss_dssp ---------------------------
T ss_pred EEEEeecCCHHHHcC-CCCCCEEEEEC
Confidence 899999999999999 99999999983
No 436
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=79.46 E-value=12 Score=37.55 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 019871 215 REQDLREGLQLYRTGKYEVAREKFESV 241 (334)
Q Consensus 215 ~~~~~nlG~al~~~g~yeeAl~~fekA 241 (334)
...+-++|..+.+.++++.|+.+|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344459999999999999999999986
No 437
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.52 E-value=12 Score=41.02 Aligned_cols=69 Identities=9% Similarity=-0.167 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCC-------------------CcchHHHHHHHHHHHHCCChHHHHHHH
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVLG-SKPTP-------------------EESSVASYNVACCYSKLNQVKAGLSAL 275 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekALe-ldP~~-------------------~e~~~a~yNlA~ay~~lG~~eeAl~~l 275 (334)
...|-+|.+++..|++++|..+|.+|.. +..+. .-.+..|+.+...+.+.+.++.+++..
T Consensus 843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa 922 (1139)
T 4fhn_B 843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 922 (1139)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3457999999999999999999999852 21111 011345667778899999999999999
Q ss_pred HHHHHcCCC
Q 019871 276 EDALLAGYE 284 (334)
Q Consensus 276 ekAIelgp~ 284 (334)
+.||+....
T Consensus 923 ~lAi~~~~~ 931 (1139)
T 4fhn_B 923 LLADASKET 931 (1139)
T ss_dssp HHHHHHCCS
T ss_pred HHHHHhccC
Confidence 999987654
No 438
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=77.18 E-value=1.1 Score=44.23 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=34.0
Q ss_pred CceEEEeeCCCCccccccccccCcEeeeeccccccccccccchhhHHHHHH
Q 019871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATSAVFGTEIWPAAEYGRTMYTIR 155 (334)
Q Consensus 105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~sa~fg~~~w~~~~~~~v~sai~ 155 (334)
++|+|..|.+++.|+++| +++||+|+.+- ..++.++..+..++.
T Consensus 386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vn------g~~v~~~~~~~~~l~ 429 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAG-IRPGDIIISAN------KKPVTDVKSLQTIAQ 429 (451)
T ss_dssp EEEEEEEECTTSHHHHHT-CCTTCEEEEET------TEECCSHHHHHHHTT
T ss_pred CceEEEEECCCCHHHHcC-CCCCCEEEEEC------CEECCCHHHHHHHHh
Confidence 489999999999999999 99999999983 234455554555444
No 439
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=76.27 E-value=5.4 Score=28.52 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=22.3
Q ss_pred HHHHhcChhhHHHhcChHHHHHHHHH
Q 019871 286 FKRVRTDPDLENLRASEEFDVLLKRF 311 (334)
Q Consensus 286 ~~~i~~Dpdl~~Lr~dp~F~~lL~~~ 311 (334)
+..++.||++..+.++|+|..+++.+
T Consensus 5 ~~kl~~dPe~~~~m~dP~~~~~lq~i 30 (62)
T 2lnm_A 5 ISKIMENPDVAMAFQNPRVQAALMEC 30 (62)
T ss_dssp HHHHTTSHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHcChHHHHHcCCHHHHHHHHHH
Confidence 45789999999999999999988765
No 440
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=75.73 E-value=2.6 Score=42.85 Aligned_cols=38 Identities=21% Similarity=0.431 Sum_probs=31.0
Q ss_pred cceeEeec------------CCCceEEEeeCCCCccccccccccCcEeeeec
Q 019871 95 YGLKFAKG------------RDGGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 95 lgl~~~~~------------~~g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
|||.+..- ...|++|..|.|++.|+|+ +++||+|+.+-
T Consensus 255 LGv~~~~~~~~~~~~~~~l~~~~Gv~V~~V~~~spA~~a--l~~GDvI~~id 304 (539)
T 4fln_A 255 LGVLLQKLENPALRECLKVPTNEGVLVRRVEPTSDASKV--LKEGDVIVSFD 304 (539)
T ss_dssp CCEEEEECCCHHHHHHHTCSSSBCEEEEEECTTSGGGGT--CCTTCEEEEET
T ss_pred cceEEEecCCHHHHHhcCCCCcCceeeecccCCChHHhC--ccCCCEEEEEC
Confidence 68877542 2359999999999999974 89999999973
No 441
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=74.23 E-value=3.1 Score=44.38 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=32.4
Q ss_pred CcceeEeecCCCceEEEeeCCC--------Cccccccc-cccCcEeeeec
Q 019871 94 PYGLKFAKGRDGGTYIDAIAPG--------GSADKTGM-FQVGDKVLATS 134 (334)
Q Consensus 94 Plgl~~~~~~~g~v~v~~~~~~--------~~a~~~~~-i~~gD~v~~~s 134 (334)
-+|+.+.. .+|+++|..|.+| +.|+++|. |+ ||+|++|-
T Consensus 738 g~G~~~~~-~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~ 785 (1045)
T 1k32_A 738 RIACDFKL-DGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDID 785 (1045)
T ss_dssp BCSEEEEE-ETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEET
T ss_pred eecEEEEE-eCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEEC
Confidence 46788865 4688999999998 99999983 88 99999983
No 442
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.49 E-value=4 Score=39.65 Aligned_cols=63 Identities=13% Similarity=-0.026 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
..+|..+++.|++++|+++|.++.............+.+...++...+++..+...+++|-.+
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 478888888888888888888888665544434567777777777788888888888887443
No 443
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=72.52 E-value=29 Score=30.02 Aligned_cols=45 Identities=7% Similarity=0.003 Sum_probs=26.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHH
Q 019871 226 YRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDA 278 (334)
Q Consensus 226 ~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekA 278 (334)
.+.|+++.|++..++. ++ ...|..+|......|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----ND---SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CC---HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CC---HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4566666666664433 11 345666666666666666666666665
No 444
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=71.42 E-value=5.7 Score=29.28 Aligned_cols=50 Identities=10% Similarity=0.266 Sum_probs=39.2
Q ss_pred CCCCHHHHhcChhhHHHhcChHHHHHHHHHH-------H-hhhchhHHHHHHHhhccc
Q 019871 282 GYEDFKRVRTDPDLENLRASEEFDVLLKRFD-------E-SFINENAINAIKSLFGLL 331 (334)
Q Consensus 282 gp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~-------e-~~~~~~ai~~~k~~~~~~ 331 (334)
+|+....+..||.+..+.++|+|.++|+.+. + -+.+.+-.+.|..+.|.+
T Consensus 12 ~p~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g~~ 69 (71)
T 2llv_A 12 DPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMGVD 69 (71)
T ss_dssp SSSCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHcCC
Confidence 6787788999999999999999999998754 3 455666677777777654
No 445
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=70.26 E-value=28 Score=29.72 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=51.8
Q ss_pred CHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 214 RREQDLREGLQ-LYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 214 ~~~~~~nlG~a-l~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
...+.+++++- +..+|+-++=-+.+...+.-+|-+ +..++.+|.+|.++|+..+|-+.+.+|-+.|-.
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~---~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVS---ASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCC---hHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34556677754 477888877767776655555444 679999999999999999999999999998864
No 446
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=69.40 E-value=1.7 Score=42.81 Aligned_cols=29 Identities=28% Similarity=0.626 Sum_probs=27.0
Q ss_pred CceEEEeeCCCCccccccccccCcEeeeec
Q 019871 105 GGTYIDAIAPGGSADKTGMFQVGDKVLATS 134 (334)
Q Consensus 105 g~v~v~~~~~~~~a~~~~~i~~gD~v~~~s 134 (334)
.+++|..|.+++.|+++| +++||+|+.+-
T Consensus 286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~in 314 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLN 314 (448)
T ss_dssp CSEECCCCTTCSSSTTTT-CCTTCEECBSS
T ss_pred CceEEEEeccCCHHHHcC-CCCCCEEEEEC
Confidence 589999999999999998 99999999983
No 447
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=66.60 E-value=21 Score=30.52 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--C-c--chHHH-HHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGSKPTP--E-E--SSVAS-YNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALeldP~~--~-e--~~~a~-yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
..+..|..+|..|+|=+|-+.++.+....+.. . . ...+. .-.|+.+...|+..-|...|.+|+..
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45778899999999999999999999876553 1 0 12333 44455567789999999999999874
No 448
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=63.47 E-value=9 Score=29.09 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLG 243 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALe 243 (334)
...+|...-+.|+|++|+.+|.++|+
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44666677777777777777776665
No 449
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=61.98 E-value=9.9 Score=28.71 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLG 243 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALe 243 (334)
...+|...-+.|+|++|+.+|.++|+
T Consensus 14 lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 14 YAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34566666667777777666666654
No 450
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=61.68 E-value=7.3 Score=30.68 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=20.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 019871 220 REGLQLYRTGKYEVAREKFESVLG 243 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALe 243 (334)
.++..+.+.|+|++||++.++|..
T Consensus 20 RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHH
Confidence 778899999999999999887764
No 451
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=61.18 E-value=17 Score=27.90 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh-hchhHHHHHHHh
Q 019871 268 VKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF-INENAINAIKSL 327 (334)
Q Consensus 268 ~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~-~~~~ai~~~k~~ 327 (334)
..+++..-.++|+.+|+|+.. | -+||..|..|.=.. ++-+.|+++|.+
T Consensus 26 ~~~~v~~Ai~~L~~~PsnPa~---------L---AeyQ~kl~eysl~rNaqSttiKa~KDi 74 (85)
T 2ca5_A 26 LQGELTLALDKLAKNPSNPQL---------L---AEYQSKLSEYTLYRNAQSNTVKVIKDV 74 (85)
T ss_dssp HHHHHHHHHHHHHHCTTCHHH---------H---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHH---------H---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566667788986542 1 37999999997666 777899999986
No 452
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=61.05 E-value=36 Score=32.94 Aligned_cols=62 Identities=16% Similarity=0.039 Sum_probs=48.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC--CC-cchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPT--PE-ESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~--~~-e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
.+|..++..|+|.+|+..+.+.++--.. +. ..-..+-...-.|..++++.++-..|.+|...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 8999999999999999999998853221 11 01245667777899999999999999999655
No 453
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=59.77 E-value=51 Score=30.53 Aligned_cols=84 Identities=10% Similarity=-0.098 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-----------------------------
Q 019871 201 QMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEE----------------------------- 250 (334)
Q Consensus 201 q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e----------------------------- 250 (334)
++......+..+|.+.... .+-..|+-.|+|+.|++.++-+.+++|+..-
T Consensus 16 al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG~~~P~~~g 95 (273)
T 1zbp_A 16 ALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLG 95 (273)
T ss_dssp HHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCC
T ss_pred HHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 4455556677788887764 7777888999999999999999999999620
Q ss_pred ---chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 251 ---SSVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 251 ---~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
......-.|......|+.++|...-++|++.-|.
T Consensus 96 ~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 96 ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 0122233445556678999999999999888765
No 454
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=59.60 E-value=9.3 Score=29.15 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=11.4
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 257 NVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 257 NlA~ay~~lG~~eeAl~~lekAIel 281 (334)
..|.-+-..|++++|+..|..||+.
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3333344444445555544444443
No 455
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=56.74 E-value=17 Score=27.18 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~ 248 (334)
...+|..+...|++++|+.+|-+||.+-|+-
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 3589999999999999999999999999885
No 456
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=56.51 E-value=28 Score=27.16 Aligned_cols=49 Identities=12% Similarity=0.247 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhh-hchhHHHHHHHhh
Q 019871 268 VKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESF-INENAINAIKSLF 328 (334)
Q Consensus 268 ~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~-~~~~ai~~~k~~~ 328 (334)
..+++..-.++++.+|+|+.. | -+|+..+..|.-.. ++-+.|++||.+-
T Consensus 32 ~~~~l~~Al~~L~~~psNPa~---------L---Ae~Qa~lseynl~RNaQSntiKa~KD~~ 81 (92)
T 2g0u_A 32 LNKQLQDAQANLTKNPSDPTA---------L---ANYQMIMSEYNLYRNAQSSAVKSMKDID 81 (92)
T ss_dssp HHHHHHHHHHHHHHSTTCHHH---------H---HHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCHHH---------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444556678886542 1 37999999998887 7778999999874
No 457
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=56.31 E-value=96 Score=34.24 Aligned_cols=70 Identities=14% Similarity=0.039 Sum_probs=57.0
Q ss_pred hccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCCcchHHHHHHHHHHHHCCCh-HHHHHHHHHHHHcCCC
Q 019871 211 QKERREQDLREGLQLYRTGKYEVAREKFESVLG--SKPTPEESSVASYNVACCYSKLNQV-KAGLSALEDALLAGYE 284 (334)
Q Consensus 211 l~~~~~~~~nlG~al~~~g~yeeAl~~fekALe--ldP~~~e~~~a~yNlA~ay~~lG~~-eeAl~~lekAIelgp~ 284 (334)
..|+-...-.+-..+.+.|++++|++.|++..+ +.|+ ...|.-+=.|+.+.|+. ++|.+.|++..+.|..
T Consensus 161 ~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD----vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~ 233 (1134)
T 3spa_A 161 KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD----LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLK 233 (1134)
T ss_dssp TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCC
T ss_pred CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCC
Confidence 445555555777889999999999999999985 5676 47888888899999985 7899999999888864
No 458
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=55.41 E-value=30 Score=26.02 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=36.0
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhh
Q 019871 255 SYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFI 316 (334)
Q Consensus 255 ~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~ 316 (334)
.-.+|.=|+.+|+|+.|+.+|+.+++.=-... ....||. .+ .+|+.+.+...+.+.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l-~~~~d~~---~r--~kW~~~~~ei~~E~~ 70 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYL-YSVKDTH---LR--QKWQQVWQEINVEAK 70 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH-HTCSCHH---HH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-HhcCCHH---HH--HhHHHHHHHHHHHHH
Confidence 45778889999999999999999988611111 1122432 22 367777766655543
No 459
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=53.88 E-value=49 Score=32.31 Aligned_cols=46 Identities=13% Similarity=-0.118 Sum_probs=38.1
Q ss_pred HHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871 202 MQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTP 248 (334)
Q Consensus 202 ~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~ 248 (334)
...|.+++...|..+..+ ..+.-+.+.|+.++|...|++|+.. |.+
T Consensus 199 ~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~ 245 (493)
T 2uy1_A 199 HFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG 245 (493)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc
Confidence 357888888778776655 6677778899999999999999999 987
No 460
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=53.81 E-value=17 Score=28.54 Aligned_cols=30 Identities=10% Similarity=-0.071 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 252 SVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 252 ~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
+..+--+|-.+.+.|+|++||++.++|...
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 345667889999999999999999988754
No 461
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=52.50 E-value=34 Score=35.15 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAG 271 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeA 271 (334)
.+.+|...+..|+|.+|.+..+.++..+|++ ..+..-+|.+|.++|.-.+.
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~---~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDN---RAARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHHhccC
Confidence 3588899999999999999999999999999 57889999999998854443
No 462
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=52.19 E-value=17 Score=27.91 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=9.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 019871 220 REGLQLYRTGKYEVAREKFESV 241 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekA 241 (334)
..|...-+.|+|++|+.+|..+
T Consensus 20 ~~Ave~D~~g~y~eAl~~Y~~A 41 (93)
T 1wfd_A 20 KRAVELDAESRYQQALVCYQEG 41 (93)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 3333444444444444444333
No 463
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=51.26 E-value=19 Score=26.95 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 019871 220 REGLQLYRTGKYEVAREKFESVLG 243 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALe 243 (334)
..|...-..|+|++|+.+|.++++
T Consensus 18 ~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 18 QKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444555555555444443
No 464
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=49.98 E-value=61 Score=33.17 Aligned_cols=58 Identities=12% Similarity=-0.016 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe 280 (334)
+..+.++ +.|+++.|...|++.-...+.. +...|++|.++..+|+.++|...|+++..
T Consensus 290 ~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~---~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 290 RRVRMAL-GTGDRRGLNTWLARLPMEAKEK---DEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHH-HHTCHHHHHHHHHHSCTTGGGS---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHH-HCCCHHHHHHHHHHcccccccc---HhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4555554 6699999999997755432222 67899999999999999999999999876
No 465
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=47.23 E-value=19 Score=29.03 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=12.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 019871 220 REGLQLYRTGKYEVAREKFESVLG 243 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALe 243 (334)
.+|...-+.|+|++|+.+|..|++
T Consensus 23 ~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 23 SKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 444444455555555555555444
No 466
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=45.63 E-value=34 Score=25.17 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=20.5
Q ss_pred HHhcChhhHHHhcChHHHHHHHHH
Q 019871 288 RVRTDPDLENLRASEEFDVLLKRF 311 (334)
Q Consensus 288 ~i~~Dpdl~~Lr~dp~F~~lL~~~ 311 (334)
.++.||++..+..||.+..++..+
T Consensus 15 ~~m~dPEi~~im~DP~~~~~lq~~ 38 (71)
T 2llw_A 15 RAMKDPEVAAIMQDPVMQSILQQA 38 (71)
T ss_dssp HHHHSHHHHHHHTCTHHHHHHHHH
T ss_pred HHhcCHHHHHHhCCHHHHHHHHHH
Confidence 677899999999999999998754
No 467
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=44.90 E-value=29 Score=26.20 Aligned_cols=28 Identities=11% Similarity=0.001 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 254 ASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 254 a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
.+..+|.-+-+.|++++|+..|.+||+.
T Consensus 21 ~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 21 KYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455666667778999999999988886
No 468
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=43.91 E-value=36 Score=26.24 Aligned_cols=60 Identities=27% Similarity=0.274 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPE---ESSVASYNVACCYSKLNQVKAGLSALEDALL 280 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~---e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe 280 (334)
+..|..++..|+|=+|-+.++.+-...|... -...+..-.|+.+...|+. |...+.+|+.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 5678899999999999999999998776521 0123334445556678888 9999999987
No 469
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=42.98 E-value=32 Score=25.79 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=19.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 255 SYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 255 ~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
+..+|.-+-+.|++++|+..|.+||+.
T Consensus 14 lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 14 YAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444555556678888888888888876
No 470
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=41.81 E-value=22 Score=26.76 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 019871 217 QDLREGLQLYRTGKYEVAREKFESVLGS 244 (334)
Q Consensus 217 ~~~nlG~al~~~g~yeeAl~~fekALel 244 (334)
+...+|..+...|+|+.|+.+|+.+++.
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4458899999999999999999999864
No 471
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=40.09 E-value=53 Score=27.33 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=40.4
Q ss_pred HhcCCCCCc-----chHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHH
Q 019871 242 LGSKPTPEE-----SSVASYNVACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFD 312 (334)
Q Consensus 242 LeldP~~~e-----~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~ 312 (334)
+++||+.+- .+...+..|..|...|+.+.|...|-+++.+= .+.+.+.||+..... ++++.++.+..
T Consensus 25 ~~v~~~i~l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~---~e~IpkHpdy~~~~~-~~~~~~l~~l~ 96 (146)
T 2xze_A 25 VEVNEDIPPRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLF---IEKLPKHRDYKSAVI-PEKKDTVKKLK 96 (146)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HTTGGGSTTTTTCCC-TTHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHHcccCccchhhhh-HHHHHHHHHHH
Confidence 455665531 12345666888889999999999999987762 224555666543321 34555555444
No 472
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=39.72 E-value=80 Score=24.72 Aligned_cols=46 Identities=28% Similarity=0.394 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Q 019871 218 DLREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYS 263 (334)
Q Consensus 218 ~~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~ 263 (334)
.+..|-.+|+.++|.+|+..|+++..+..+....-.+-|.++.|--
T Consensus 56 ~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 56 LIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHH
Confidence 4588899999999999999999998654331111123356666543
No 473
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=38.01 E-value=1.3e+02 Score=24.21 Aligned_cols=66 Identities=18% Similarity=0.057 Sum_probs=47.2
Q ss_pred HHHHHHHhhccCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHH
Q 019871 203 QNYMKKKEQKERREQDL--REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALED 277 (334)
Q Consensus 203 ~~y~~~iel~~~~~~~~--nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lek 277 (334)
...-+.++..+. ++.. -+...+...|+|++|+...+..- . +..--..|.|-.++|..+++..++.+
T Consensus 27 ~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~---pdlepw~ALce~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 27 NCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA-----Y---PDLEPWLALCEYRLGLGSALESRLNR 94 (116)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----C---GGGHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----C---chHHHHHHHHHHhcccHHHHHHHHHH
Confidence 334455666666 5554 56678899999999988744322 2 34566778899999999999888843
No 474
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=37.86 E-value=41 Score=25.72 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 254 ASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 254 a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
.+...|.-.-..|++++|+..|..||+.
T Consensus 17 ~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 17 AVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666778899999988888886
No 475
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=37.77 E-value=31 Score=27.04 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPT 247 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~ 247 (334)
+.+|..+...|+++.|+.+|-+||.+-|+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 48899999999999999999999988877
No 476
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.21 E-value=27 Score=35.31 Aligned_cols=59 Identities=7% Similarity=0.004 Sum_probs=39.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Q 019871 223 LQLYRTGKYEVAREKFESVLGSKPTP----EESSVASYNVACCYSKLNQVKAGLSALEDALLAGY 283 (334)
Q Consensus 223 ~al~~~g~yeeAl~~fekALeldP~~----~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp 283 (334)
..|...+.|+.|.....++. .|.. .+...-+|..|.+++.+++|.+|.++|..|+..-|
T Consensus 239 RnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 239 RDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 34456677777777777774 3432 12234566777778888888888888887777654
No 477
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=36.14 E-value=47 Score=25.12 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLG 243 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALe 243 (334)
...+...-+.|+|++|+.+|.++++
T Consensus 20 v~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 20 LKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4777777777777777777666654
No 478
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.04 E-value=82 Score=31.80 Aligned_cols=100 Identities=10% Similarity=0.130 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHHHHCCChHHHHHH----HHHHHHcCCCCHHHHh
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEES----SVASYNVACCYSKLNQVKAGLSA----LEDALLAGYEDFKRVR 290 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~----~~a~yNlA~ay~~lG~~eeAl~~----lekAIelgp~~~~~i~ 290 (334)
|..|..+.-.++|.+|.+++..|+..-|.+... ..++-.+-.|-..+|++.+--.. +++++.-... ...+.
T Consensus 274 YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~-Lv~Av 352 (523)
T 4b4t_S 274 FYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYH-LTKAV 352 (523)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHH-HHHHH
Confidence 489999999999999999999999998876321 12332333444446775431110 1111111000 00111
Q ss_pred cChhhHHHhcChHHHHHHHHHHHhhhchhHHHHHH
Q 019871 291 TDPDLENLRASEEFDVLLKRFDESFINENAINAIK 325 (334)
Q Consensus 291 ~Dpdl~~Lr~dp~F~~lL~~~~e~~~~~~ai~~~k 325 (334)
+. -+...|...++.+...|..++-.-.|+
T Consensus 353 r~------GdL~~F~~~L~~h~~~F~~Dgty~LI~ 381 (523)
T 4b4t_S 353 KL------GDLKKFTSTITKYKQLLLKDDTYQLCV 381 (523)
T ss_dssp HH------TCHHHHHHHHHHTHHHHHHTTCTHHHH
T ss_pred Hc------CCHHHHHHHHHHhcceeccCChhHHHH
Confidence 11 122478888888888886665544443
No 479
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=35.20 E-value=1.1e+02 Score=30.45 Aligned_cols=62 Identities=15% Similarity=0.013 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Q 019871 200 IQMQNYMKKKEQKERREQDL-REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSK 264 (334)
Q Consensus 200 ~q~~~y~~~iel~~~~~~~~-nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~ 264 (334)
.+..-|.+++.+.|.....+ .+|......|++-+|+-+|-+++.....+ +.+.-|+...+.+
T Consensus 170 ~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf---~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF---PAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHH
Confidence 46678999999999987666 89999999999999999999999776656 6799999888875
No 480
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=34.19 E-value=53 Score=24.39 Aligned_cols=28 Identities=14% Similarity=-0.012 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 254 ASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 254 a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
.+...|.-.-..|++++|+..|..|+++
T Consensus 15 ~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 15 ELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555566778999999999999886
No 481
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=31.13 E-value=49 Score=26.54 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=20.0
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 255 SYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 255 ~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
+...|.-.-..|++++|+..|..||++
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344455555668899999999999886
No 482
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.10 E-value=94 Score=33.24 Aligned_cols=67 Identities=9% Similarity=-0.134 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCC-----------------c--chHHHHHHHHHHHHCCChHHHHHHH
Q 019871 216 EQDLREGLQLYRTGKYEVAREKFESVL-GSKPTPE-----------------E--SSVASYNVACCYSKLNQVKAGLSAL 275 (334)
Q Consensus 216 ~~~~nlG~al~~~g~yeeAl~~fekAL-eldP~~~-----------------e--~~~a~yNlA~ay~~lG~~eeAl~~l 275 (334)
...|-+|.++...|++++|..+|++|- .+..... . ....|.+....+-..+.++.+++..
T Consensus 841 ~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA 920 (950)
T 4gq2_M 841 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 920 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345799999999999999999999886 2221110 0 1235677888889999999999999
Q ss_pred HHHHHcC
Q 019871 276 EDALLAG 282 (334)
Q Consensus 276 ekAIelg 282 (334)
+.||+.-
T Consensus 921 ~lAI~~~ 927 (950)
T 4gq2_M 921 LLADASK 927 (950)
T ss_dssp HHHHHTC
T ss_pred HHHHhhc
Confidence 9999864
No 483
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=30.80 E-value=93 Score=28.00 Aligned_cols=50 Identities=16% Similarity=0.079 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH-----hcCCCCCcchHHHHHHHHHHH-HCCChHHHHHHHHHHHHc
Q 019871 232 EVAREKFESVL-----GSKPTPEESSVASYNVACCYS-KLNQVKAGLSALEDALLA 281 (334)
Q Consensus 232 eeAl~~fekAL-----eldP~~~e~~~a~yNlA~ay~-~lG~~eeAl~~lekAIel 281 (334)
+.|..+|++|+ .+.|.+|.+--...|-+..|. .+++.++|+...++|++-
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46777777777 367888533333444454444 589999999988888764
No 484
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=30.71 E-value=91 Score=28.58 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHh----cCCCCCcchHHHHHHHHHHH-HCCChHHHHHHHHHHHHcC
Q 019871 232 EVAREKFESVLG----SKPTPEESSVASYNVACCYS-KLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 232 eeAl~~fekALe----ldP~~~e~~~a~yNlA~ay~-~lG~~eeAl~~lekAIelg 282 (334)
+.|..+|++|++ +.|.+|.+--...|-++.|. .+++.++|+...++|++-.
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 228 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA 228 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 567788888874 67777533233444454444 5899999999999887653
No 485
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=27.54 E-value=3.3e+02 Score=26.11 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=24.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC----CCCCcchHHHHHHHHHHH-HCCChHHHHHHHHHHH
Q 019871 222 GLQLYRTGKYEVAREKFESVLGSK----PTPEESSVASYNVACCYS-KLNQVKAGLSALEDAL 279 (334)
Q Consensus 222 G~al~~~g~yeeAl~~fekALeld----P~~~e~~~a~yNlA~ay~-~lG~~eeAl~~lekAI 279 (334)
...++..+++..+-..|++|.... ++....+.....-|..+. ..++|.+|..+|-+|+
T Consensus 146 ~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 146 SKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 334455555555555555554221 110001122233344444 4555555555555543
No 486
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.30 E-value=91 Score=33.37 Aligned_cols=101 Identities=13% Similarity=0.069 Sum_probs=59.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHH-HcCCCCHHHHhcChhhHHH
Q 019871 220 REGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDAL-LAGYEDFKRVRTDPDLENL 298 (334)
Q Consensus 220 nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAI-elgp~~~~~i~~Dpdl~~L 298 (334)
.+...+...|.|+-|. +.+..-|.+ +..-|-+|.||...|++++|..+|++|- -+...... ...+.....+
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t---~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~-~~~~~~~~~l 886 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSD---PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ-FAVLREFQEI 886 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSS---HHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCS-CGGGHHHHHH
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccc-ccchhhhhhc
Confidence 3555667777776543 244666666 4566999999999999999999999984 22222110 0001111111
Q ss_pred hc--------ChHHHHHHHHHHHhhhchhHHHHHHHhh
Q 019871 299 RA--------SEEFDVLLKRFDESFINENAINAIKSLF 328 (334)
Q Consensus 299 r~--------dp~F~~lL~~~~e~~~~~~ai~~~k~~~ 328 (334)
-. ..=|..+++-|++.-..+-+|++-+-.+
T Consensus 887 l~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI 924 (950)
T 4gq2_M 887 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD 924 (950)
T ss_dssp HHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 10 0135666677776666666666555433
No 487
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=26.87 E-value=1.2e+02 Score=22.47 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Q 019871 255 SYNVACCYSKLNQVKAGLSALEDALLAGYED 285 (334)
Q Consensus 255 ~yNlA~ay~~lG~~eeAl~~lekAIelgp~~ 285 (334)
...+|-.+...|++++|+.+|-+||..-|.-
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 3467888999999999999999999998773
No 488
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=26.15 E-value=2.9e+02 Score=29.04 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=38.3
Q ss_pred HHHHHHCCChHHHHHHHHHHHHcCCCCHHHHhcChhhHHHhcChHHHHHHHHHHHhhhchhHHHHHHHh
Q 019871 259 ACCYSKLNQVKAGLSALEDALLAGYEDFKRVRTDPDLENLRASEEFDVLLKRFDESFINENAINAIKSL 327 (334)
Q Consensus 259 A~ay~~lG~~eeAl~~lekAIelgp~~~~~i~~Dpdl~~Lr~dp~F~~lL~~~~e~~~~~~ai~~~k~~ 327 (334)
|-.+...|+++-|++..++|+.+-|..+. -|-.|.+.|-..-.++||+=++-+|
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~---------------tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFE---------------SWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhH---------------HHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44455679999999999999999999876 2334455555555666666555444
No 489
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=26.02 E-value=1.2e+02 Score=27.67 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHh-----cCCCCCcchHHHHHHHHHHH-HCCChHHHHHHHHHHHHc
Q 019871 232 EVAREKFESVLG-----SKPTPEESSVASYNVACCYS-KLNQVKAGLSALEDALLA 281 (334)
Q Consensus 232 eeAl~~fekALe-----ldP~~~e~~~a~yNlA~ay~-~lG~~eeAl~~lekAIel 281 (334)
+.|..+|++|++ +.|.+|.+--...|-++.|. .+++.++|+...++|++-
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 467778887773 67888543333445454444 589999999988888754
No 490
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=25.77 E-value=1.3e+02 Score=27.41 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=33.4
Q ss_pred HHHHHHHHHHH-----hcCCCCCcchHHHHHHHHHH-HHCCChHHHHHHHHHHHHc
Q 019871 232 EVAREKFESVL-----GSKPTPEESSVASYNVACCY-SKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 232 eeAl~~fekAL-----eldP~~~e~~~a~yNlA~ay-~~lG~~eeAl~~lekAIel 281 (334)
+.|..+|++|+ .+.|.+|.+--...|-++.| --+++.++|+...++|++-
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56777777775 36788864333344445444 4589999999988887654
No 491
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=31.10 E-value=15 Score=38.12 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHH
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGL 272 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl 272 (334)
+.++...+..|+|.+|.+..+.++..+|++ ..+..-+|.+|.++|.-.+.-
T Consensus 465 ~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~---~~ar~l~a~~~~~l~~~~~~~ 515 (668)
T 2yhe_A 465 LKQMRAAIDKGDYRWAVQLGNHLVFADPAN---KDARALQADAMEQLGYQTENA 515 (668)
Confidence 477888899999999999999999999999 457888888888888766553
No 492
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=24.12 E-value=1.5e+02 Score=28.94 Aligned_cols=52 Identities=13% Similarity=0.074 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCCC--------CcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 231 YEVAREKFESVLGSKPTP--------EESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 231 yeeAl~~fekALeldP~~--------~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
|+..++.++.|+..=|.. .....++--+|.+|.-.|++++|+..++++|...
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 344455555555443321 1234678889999999999999999999999863
No 493
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=23.47 E-value=1.7e+02 Score=28.16 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCCC-----CcchHHHHHHHHHHHHCCChHHHHHHHHHHHHcC
Q 019871 231 YEVAREKFESVLGSKPTP-----EESSVASYNVACCYSKLNQVKAGLSALEDALLAG 282 (334)
Q Consensus 231 yeeAl~~fekALeldP~~-----~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIelg 282 (334)
|+..++.++.|+..=|.. .....++--+|.+|.-.|++++|++.++++|..+
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 556667777777655542 1235678888999999999999999999999864
No 494
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=23.00 E-value=1.4e+02 Score=26.96 Aligned_cols=51 Identities=14% Similarity=0.142 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHh-----cCCCCCcchHHHHHHHHHH-HHCCChHHHHHHHHHHHHc
Q 019871 231 YEVAREKFESVLG-----SKPTPEESSVASYNVACCY-SKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 231 yeeAl~~fekALe-----ldP~~~e~~~a~yNlA~ay-~~lG~~eeAl~~lekAIel 281 (334)
-+.|..+|++|++ +.|.+|.+--..-|-++.| --+++.++|+...++|++-
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3667778887763 6788864333344445444 4679999999988887654
No 495
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=22.63 E-value=1.6e+02 Score=25.47 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 019871 219 LREGLQLYRTGKYEVAREKFESVLGSKPTP 248 (334)
Q Consensus 219 ~nlG~al~~~g~yeeAl~~fekALeldP~~ 248 (334)
|.+|..++-.++|.+|.+++.+|+..-|+.
T Consensus 18 YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 18 YYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 599999999999999999999999998876
No 496
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=22.58 E-value=1.6e+02 Score=27.02 Aligned_cols=50 Identities=16% Similarity=0.085 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHh-----cCCCCCcchHHHHHHHHHHH-HCCChHHHHHHHHHHHHc
Q 019871 232 EVAREKFESVLG-----SKPTPEESSVASYNVACCYS-KLNQVKAGLSALEDALLA 281 (334)
Q Consensus 232 eeAl~~fekALe-----ldP~~~e~~~a~yNlA~ay~-~lG~~eeAl~~lekAIel 281 (334)
+.|..+|++|++ +.|.+|.+--...|-++.|. -+++.++|+...++|++-
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788887763 67888543333445554444 479999999988888664
No 497
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=21.90 E-value=1.8e+02 Score=27.86 Aligned_cols=51 Identities=12% Similarity=0.116 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCCC-----CcchHHHHHHHHHHHHCCChHHHHHHHHHHHHc
Q 019871 231 YEVAREKFESVLGSKPTP-----EESSVASYNVACCYSKLNQVKAGLSALEDALLA 281 (334)
Q Consensus 231 yeeAl~~fekALeldP~~-----~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIel 281 (334)
|+..++.++.|+..=|.. .....++--+|.+|.-.|++++|++.++++|..
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 344555555555543432 123567888899999999999999999999975
No 498
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=21.36 E-value=1e+02 Score=26.73 Aligned_cols=33 Identities=15% Similarity=-0.112 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Q 019871 252 SVASYNVACCYSKLNQVKAGLSALEDALLAGYE 284 (334)
Q Consensus 252 ~~a~yNlA~ay~~lG~~eeAl~~lekAIelgp~ 284 (334)
..-.|.+|..++..+++.+|.++|..|+..-|.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 456799999999999999999999999998664
No 499
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=20.43 E-value=1e+02 Score=33.55 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=57.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHCCChHHHHHHHHHHHH-cCCCCHHHHhcChhhHHH-
Q 019871 221 EGLQLYRTGKYEVAREKFESVLGSKPTPEESSVASYNVACCYSKLNQVKAGLSALEDALL-AGYEDFKRVRTDPDLENL- 298 (334)
Q Consensus 221 lG~al~~~g~yeeAl~~fekALeldP~~~e~~~a~yNlA~ay~~lG~~eeAl~~lekAIe-lgp~~~~~i~~Dpdl~~L- 298 (334)
+...+...+.|+-|.+ .+..-|.+ +..-|-+|.||...|++++|..+|++|-. ++.++.. ......+..+
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~---~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l-~~~~~~~~~~~ 889 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSD---PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ-FAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCC---HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS-CSSHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCC---cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh-hhhhccccccc
Confidence 3344555666655543 23344555 45669999999999999999999999832 2221110 0000011111
Q ss_pred ------hcCh-HHHHHHHHHHHhhhchhHHHHHHHhhc
Q 019871 299 ------RASE-EFDVLLKRFDESFINENAINAIKSLFG 329 (334)
Q Consensus 299 ------r~dp-~F~~lL~~~~e~~~~~~ai~~~k~~~~ 329 (334)
...+ =|..++.-|++.-..+.+|++.+..+.
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 927 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0112 256677777777677777777665443
Done!