BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>019873
MYSALSCQFGGELVAASGKEAEYAKRRRQALKRVDRELSRGNFKVALSLVKQLQRKPAGG
LRGFGAAKQVPKRLSSLDESELDSKELLTLRALFDSVMESIERCNLFDSLDEAPSDTVES
IVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFV
GFDFLKEVADARKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHSEGHY
SDINKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTS
KILTEQSLELLRSRTNVTLSFPHLLGKQRLVNVG

High Scoring Gene Products

Symbol, full name Information P value
AT1G54680 protein from Arabidopsis thaliana 3.0e-46
AT5G27290 protein from Arabidopsis thaliana 6.7e-43
AT1G56180 protein from Arabidopsis thaliana 0.00014

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  019873
        (334 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2199471 - symbol:AT1G54680 "AT1G54680" species...   485  3.0e-46   1
TAIR|locus:2181221 - symbol:AT5G27290 species:3702 "Arabi...   325  6.7e-43   2
TAIR|locus:2011861 - symbol:AT1G56180 "AT1G56180" species...    94  0.00014   2


>TAIR|locus:2199471 [details] [associations]
            symbol:AT1G54680 "AT1G54680" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] EMBL:CP002684
            UniGene:At.10837 UniGene:At.71292 HOGENOM:HOG000265031
            EMBL:AK221413 IPI:IPI00529113 RefSeq:NP_175867.2
            ProteinModelPortal:Q56YB0 STRING:Q56YB0 EnsemblPlants:AT1G54680.1
            GeneID:841909 KEGG:ath:AT1G54680 TAIR:At1g54680 eggNOG:NOG298880
            InParanoid:Q56YB0 OMA:FSCVILG ProtClustDB:CLSN2699143
            Genevestigator:Q56YB0 Uniprot:Q56YB0
        Length = 223

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 106/207 (51%), Positives = 139/207 (67%)

Query:    92 ALFDSVMESIERCNLFDSLDEAPSDTVESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYL 151
             +L DSV  SIE  +++        D+V +  E     S  EED F  VQHE+GHFL GYL
Sbjct:    13 SLIDSVSRSIE--SVY-----VQEDSVRTSKEMEIKTS-PEEDWFSVVQHESGHFLVGYL 64

Query:   152 LGVLPKGYEIPSVEALKQDDFTV-GRVQFVGFDFLKEVADARKQKKDTGQVGSWGNRGEI 210
             LGVLP+ YEIP++EA++Q+   V GRV+FVGF+FLK+V  A +  KD   V    N+G I
Sbjct:    65 LGVLPRHYEIPTLEAVRQNVSNVTGRVEFVGFEFLKQVGAANQLMKD--DVDGQMNQGNI 122

Query:   211 SVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLGYNKSEADSQVKWAALN 270
             S KTLNNFSCVILGG+V EH++FG+SEG YSDI KL+ V +WLG+ +SE ++ +KWA  N
Sbjct:   123 SSKTLNNFSCVILGGMVTEHILFGYSEGLYSDIVKLNDVLRWLGFTESEKEAHIKWAVSN 182

Query:   271 TVLISHHHIQVRSRLAEAMALGRSIGS 297
             TV + H H + R  LAE MA  + I +
Sbjct:   183 TVSLLHSHKEARVSLAETMAKAKPIST 209


>TAIR|locus:2181221 [details] [associations]
            symbol:AT5G27290 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0030003 "cellular
            cation homeostasis" evidence=RCA] [GO:0070838 "divalent metal ion
            transport" evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009507 UniGene:At.49069 UniGene:At.69944 EMBL:BT028971
            IPI:IPI00533047 RefSeq:NP_568492.1 ProteinModelPortal:Q08AA8
            STRING:Q08AA8 PaxDb:Q08AA8 PRIDE:Q08AA8 EnsemblPlants:AT5G27290.1
            GeneID:832787 KEGG:ath:AT5G27290 TAIR:At5g27290 eggNOG:NOG08023
            HOGENOM:HOG000265031 InParanoid:Q08AA8 OMA:KADSQVR PhylomeDB:Q08AA8
            ProtClustDB:CLSN2689874 Genevestigator:Q08AA8 Uniprot:Q08AA8
        Length = 341

 Score = 325 (119.5 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 70/180 (38%), Positives = 110/180 (61%)

Query:   118 VESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRV 177
             + S+V D +  +  +  H   VQHEAGHFL  YL+G+LP+GY + S+EAL+++    G +
Sbjct:   163 IGSLVLDTTGHTFSQRYHNRVVQHEAGHFLVAYLVGILPRGYTLSSLEALQKE----GSL 218

Query:   178 QFVGFDFLKEVADARKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHSE 237
                      +   A    +   +V    N G++S   LN FSC+ L G+  E+L++G++E
Sbjct:   219 NI-------QAGSAFVDYEFLEEV----NSGKVSATMLNRFSCIALAGVATEYLLYGYAE 267

Query:   238 GHYSDINKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGS 297
             G   DI+KLD + + LG+ + +ADSQV+W+ LNT+L+   H   RS+LA+AM+ G S+GS
Sbjct:   268 GGLDDISKLDGLVKSLGFTQKKADSQVRWSVLNTILLLRRHEIARSKLAQAMSKGESVGS 327

 Score = 145 (56.1 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 38/80 (47%), Positives = 48/80 (60%)

Query:    27 RRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKRXXXXXXXXXXXXX 86
             RRQAL++VD +LS G+ + ALSLVK LQ KP  GLR FGAA+QVP+R             
Sbjct:    42 RRQALEQVDSKLSSGDERAALSLVKDLQGKP-DGLRCFGAARQVPQRLYTLEELKLNGIN 100

Query:    87 XXXXRALFDSVMESIERCNL 106
                  +  D+ + SIER NL
Sbjct:   101 AASLLSPTDTTLGSIER-NL 119


>TAIR|locus:2011861 [details] [associations]
            symbol:AT1G56180 "AT1G56180" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] EMBL:CP002684 EMBL:AC069159
            EMBL:BT001014 IPI:IPI00523261 PIR:C96603 RefSeq:NP_564711.1
            UniGene:At.28711 ProteinModelPortal:Q9C7J3 STRING:Q9C7J3
            PRIDE:Q9C7J3 EnsemblPlants:AT1G56180.1 GeneID:842071
            KEGG:ath:AT1G56180 TAIR:At1g56180 InParanoid:Q9C7J3 OMA:NDENLFR
            PhylomeDB:Q9C7J3 ProtClustDB:CLSN2688864 Genevestigator:Q9C7J3
            Uniprot:Q9C7J3
        Length = 389

 Score = 94 (38.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 23/97 (23%), Positives = 45/97 (46%)

Query:   208 GEISVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLG--YNKSEADSQVK 265
             G +S  + + +S V+  G+ AE LV+G +EG  +D N    +   L    + ++  +Q +
Sbjct:   285 GRLSGSSFDRYSMVLFAGIAAEALVYGEAEGGENDENLFRSISVLLEPPLSVAQMSNQAR 344

Query:   266 WAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKI 302
             W+ L +  +   H        EA+ +G  +     +I
Sbjct:   345 WSVLQSYNLLKWHKAAHRAAVEALQVGSPLSIVIRRI 381

 Score = 68 (29.0 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 18/54 (33%), Positives = 25/54 (46%)

Query:   139 VQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADAR 192
             V HEAGH L  YL+G   +G  +  V A++         QF       E+A+ R
Sbjct:   233 VVHEAGHLLVAYLMGCPIRGVILDPVVAMQMGVQGQAGTQFWDQKMESEIAEGR 286


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      334       317   0.00083  116 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  204 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.63u 0.14s 23.77t   Elapsed:  00:00:01
  Total cpu time:  23.63u 0.14s 23.77t   Elapsed:  00:00:02
  Start:  Fri May 10 11:33:46 2013   End:  Fri May 10 11:33:48 2013

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