BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019874
(334 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359493166|ref|XP_002268292.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Vitis vinifera]
Length = 622
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 276/325 (84%), Positives = 295/325 (90%), Gaps = 4/325 (1%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIEDLL G+G GGAPPGFRLP+ +VG PK NKNKP L K+ IPGT+T
Sbjct: 1 MEDIEDLLVGNGVGGAPPGFRLPLASVGFKPKQNKNKPNLE----KKSHIQDYIIPGTQT 56
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IYMKTFGCSHNQSDSEYMAGQL+AFGY L+DN EEAD+WLINTCTVKSPSQSAMDTLI K
Sbjct: 57 IYMKTFGCSHNQSDSEYMAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITK 116
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+S+KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LP
Sbjct: 117 GRSSKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLP 176
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
ALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV+SLVGRVRTVIADGVKE
Sbjct: 177 ALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVKE 236
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+WLSSEDTGAYGRDIGV LPILLNAIV+ELPPDG TMLRIGMTNPP+ILEHLKE+A VLR
Sbjct: 237 IWLSSEDTGAYGRDIGVTLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEMAVVLR 296
Query: 301 HPCVYSFLHVPVQSGSDAVLSVSQK 325
HPCVYSFLHVPVQSGSDA+LS +
Sbjct: 297 HPCVYSFLHVPVQSGSDAILSAMNR 321
>gi|255561612|ref|XP_002521816.1| radical sam protein, putative [Ricinus communis]
gi|223539029|gb|EEF40626.1| radical sam protein, putative [Ricinus communis]
Length = 630
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 276/328 (84%), Positives = 297/328 (90%), Gaps = 3/328 (0%)
Query: 1 MEDIEDLL-AGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNH-LSKTGSL-SPKIPG 57
MEDIEDLL GGGAPPGFRLP+N+VGV PK K + + NH +S + SL SPKIPG
Sbjct: 1 MEDIEDLLIGSGSGGGAPPGFRLPLNSVGVYPKKIIKKNKGYLNHGISLSQSLLSPKIPG 60
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T+TIY+KTFGCSHNQSDSEYMAGQLS+FGYALTD E+ D+WLINTCTVKSPSQSAMDT+
Sbjct: 61 TQTIYIKTFGCSHNQSDSEYMAGQLSSFGYALTDIPEDGDLWLINTCTVKSPSQSAMDTI 120
Query: 118 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
IAK KSAKKPLVVAGCVPQGSR+LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL RK
Sbjct: 121 IAKGKSAKKPLVVAGCVPQGSRNLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLTRK 180
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
LPALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLVGRVRTV+ DG
Sbjct: 181 TLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVRTVVGDG 240
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
VKE+WLSSEDTGAYGRDIGVNLP LLNAIV+ELP D STMLRIGMTNPPFILEHLKEIAE
Sbjct: 241 VKEIWLSSEDTGAYGRDIGVNLPRLLNAIVSELPADASTMLRIGMTNPPFILEHLKEIAE 300
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
VLRHPCVYSFLHVPVQSGSD VL+ +
Sbjct: 301 VLRHPCVYSFLHVPVQSGSDNVLNAMNR 328
>gi|18409989|ref|NP_565035.1| Methylthiotransferase [Arabidopsis thaliana]
gi|12322201|gb|AAG51137.1|AC069273_8 unknown protein [Arabidopsis thaliana]
gi|14194137|gb|AAK56263.1|AF367274_1 At1g72090/F28P5_4 [Arabidopsis thaliana]
gi|27363418|gb|AAO11628.1| At1g72090/F28P5_4 [Arabidopsis thaliana]
gi|332197151|gb|AEE35272.1| Methylthiotransferase [Arabidopsis thaliana]
Length = 601
Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust.
Identities = 270/332 (81%), Positives = 293/332 (88%), Gaps = 9/332 (2%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDN----HLSKTGSLSP--- 53
MEDIEDLLAG GG P GFRLP+NAVG+NPK NK+K R+ S SL+P
Sbjct: 1 MEDIEDLLAGGVGGAPP-GFRLPLNAVGINPKTNKSK-RISSKPDQITASNRDSLAPPSM 58
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
KIPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGYALT+ EEAD+WLINTCTVKSPSQSA
Sbjct: 59 KIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYALTEVPEEADLWLINTCTVKSPSQSA 118
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct: 179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
EIA VLRHPCVY+FLHVPVQSGSD+VL+ +
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNR 330
>gi|297839059|ref|XP_002887411.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333252|gb|EFH63670.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 602
Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/332 (80%), Positives = 293/332 (88%), Gaps = 9/332 (2%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNH----LSKTGSLSP--- 53
MEDIEDLLAG GG P GFRLP+NAVG+NPK NK+K R+ S SL+P
Sbjct: 1 MEDIEDLLAGGVGGAPP-GFRLPLNAVGINPKTNKSK-RVSSKQDQITASNRDSLAPPSL 58
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
KIPGT+TIY+KTFGCSHNQSDSEYMAGQL+AFGYALT+ E+AD+WLINTCTVKSPSQSA
Sbjct: 59 KIPGTQTIYIKTFGCSHNQSDSEYMAGQLTAFGYALTEVPEDADLWLINTCTVKSPSQSA 118
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct: 179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
EIA VLRHPCVY+FLHVPVQSGSD+VL+ +
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNR 330
>gi|449447617|ref|XP_004141564.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Cucumis sativus]
Length = 635
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/331 (82%), Positives = 292/331 (88%), Gaps = 7/331 (2%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKY-NKNKPRLHDNHLSKTGS-----LSPK 54
MEDIEDLL G GGG P G+RLPI AVGV PK N K + S S L PK
Sbjct: 1 MEDIEDLLIGGGGGAPP-GYRLPITAVGVKPKKKNMFKSNASADDSSNEPSPIQNPLVPK 59
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGY L+DN E+AD+WLINTCTVKSPSQSAM
Sbjct: 60 IPGTQTIYVKTFGCSHNQSDSEYMAGQLSAFGYLLSDNPEDADLWLINTCTVKSPSQSAM 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
DTLI KCK+AKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 120 DTLITKCKNAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 179
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+RK LPALDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVR+VI
Sbjct: 180 NRKTLPALDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVRRVRSVI 239
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GV+E+WLSSEDTGAYGRDIGVNLPILLNAIV+ELP D STMLRIGMTNPPFILEHLKE
Sbjct: 240 NEGVREIWLSSEDTGAYGRDIGVNLPILLNAIVSELPSDASTMLRIGMTNPPFILEHLKE 299
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
IA+VL HPCVYSFLHVPVQSGSDA+LS +
Sbjct: 300 IAKVLSHPCVYSFLHVPVQSGSDAILSAMNR 330
>gi|449506818|ref|XP_004162857.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Cucumis sativus]
Length = 635
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 269/331 (81%), Positives = 291/331 (87%), Gaps = 7/331 (2%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKY-NKNKPRLHDNHLSKTGS-----LSPK 54
MEDIEDLL G GGG P G+RLP+ AVGV PK N K + S S L PK
Sbjct: 1 MEDIEDLLIGGGGGAPP-GYRLPLTAVGVKPKKKNMFKSNASADDSSNEPSPIQNPLVPK 59
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGY L+DN E+AD+WLINTCTVKSPSQSAM
Sbjct: 60 IPGTQTIYVKTFGCSHNQSDSEYMAGQLSAFGYLLSDNPEDADLWLINTCTVKSPSQSAM 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
DTLI KCK+AKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 120 DTLITKCKNAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 179
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+RK LPALDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RVR+VI
Sbjct: 180 NRKTLPALDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTLDSLVRRVRSVI 239
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GV+E+WLSSEDTGAYGRDIGV LPILLNAIV+ELP D STMLRIGMTNPPFILEHLKE
Sbjct: 240 NEGVREIWLSSEDTGAYGRDIGVTLPILLNAIVSELPSDASTMLRIGMTNPPFILEHLKE 299
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
IA+VL HPCVYSFLHVPVQSGSDA+LS +
Sbjct: 300 IAKVLSHPCVYSFLHVPVQSGSDAILSAMNR 330
>gi|356542899|ref|XP_003539902.1| PREDICTED: CDKAL1-like protein-like [Glycine max]
Length = 609
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/326 (79%), Positives = 289/326 (88%), Gaps = 12/326 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINA-VGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTE 59
MEDIEDLL GS PPGFRLP+ A VGV K N+ S + S SP IPGT+
Sbjct: 1 MEDIEDLLIGSA---TPPGFRLPLAAAVGVGTKRNQLS--------SSSLSPSPAIPGTQ 49
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
TI++KTFGCSHNQSDSEYMAGQLSAFGY+L+D+ + AD+WLINTCTVKSPSQSAMDT+I+
Sbjct: 50 TIFIKTFGCSHNQSDSEYMAGQLSAFGYSLSDDPDHADLWLINTCTVKSPSQSAMDTIIS 109
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K KS+ KPLVVAGCVPQGSRDLKELEG+SIVGVQQIDRVVE+VEETLKGHEVRLL RKKL
Sbjct: 110 KGKSSNKPLVVAGCVPQGSRDLKELEGISIVGVQQIDRVVEIVEETLKGHEVRLLTRKKL 169
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
PALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLVGRV++VI++GVK
Sbjct: 170 PALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISEGVK 229
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+WLSSEDTGAYGRDIGVNLP LLNA+VAELP D STMLRIGMTNPP+ILEHLKEIAE+L
Sbjct: 230 EIWLSSEDTGAYGRDIGVNLPTLLNALVAELPADASTMLRIGMTNPPYILEHLKEIAEIL 289
Query: 300 RHPCVYSFLHVPVQSGSDAVLSVSQK 325
RHPCVYSFLHVPVQSGSD +LS +
Sbjct: 290 RHPCVYSFLHVPVQSGSDTILSAMNR 315
>gi|224135639|ref|XP_002327268.1| predicted protein [Populus trichocarpa]
gi|222835638|gb|EEE74073.1| predicted protein [Populus trichocarpa]
Length = 612
Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust.
Identities = 270/325 (83%), Positives = 292/325 (89%), Gaps = 15/325 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIEDLL G+G G +PPGFRLP+NAVGVN K NKNKP+LH LS+T +S KIPGT
Sbjct: 1 MEDIEDLLVGNGSG-SPPGFRLPLNAVGVNLKKNKNKPKLHAKQLSET-PISSKIPGT-- 56
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
QSDSEYMAGQLS+FGY+L+D+ EEAD+WLINTCTVKSPSQSAMDTLI+K
Sbjct: 57 -----------QSDSEYMAGQLSSFGYSLSDSPEEADLWLINTCTVKSPSQSAMDTLISK 105
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
KSAKKPLVVAGCVPQGSR++KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LP
Sbjct: 106 GKSAKKPLVVAGCVPQGSRNVKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLP 165
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
ALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV+SL GRV+TVI DGVKE
Sbjct: 166 ALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLAGRVKTVIDDGVKE 225
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+WLSSEDTGAYGRDIGVNLPILLNAIVAELP DGSTMLRIGMTNPPFILEHLKEIAEVLR
Sbjct: 226 IWLSSEDTGAYGRDIGVNLPILLNAIVAELPSDGSTMLRIGMTNPPFILEHLKEIAEVLR 285
Query: 301 HPCVYSFLHVPVQSGSDAVLSVSQK 325
HPCVYSFLHVPVQSGSDA+L+ +
Sbjct: 286 HPCVYSFLHVPVQSGSDAILTAMNR 310
>gi|357111240|ref|XP_003557422.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Brachypodium distachyon]
Length = 624
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 250/322 (77%), Positives = 280/322 (86%), Gaps = 8/322 (2%)
Query: 1 MEDIEDLL--AGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
MEDIED+L AG GGGAPPG RLP++ V V PK + RL +IPGT
Sbjct: 1 MEDIEDVLGPAGFSGGGAPPGLRLPLSTVAVKPK--RRSSRLAQTQQQPEA----RIPGT 54
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM TLI
Sbjct: 55 QTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLI 114
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+KCK+A KPLVVAGCVPQGSRDLKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL RK
Sbjct: 115 SKCKNANKPLVVAGCVPQGSRDLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLLSRKT 174
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSY+++ LV RV+ V+++GV
Sbjct: 175 LPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYSIDGLVDRVKIVVSEGV 234
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
+E+WLSSEDTGAYGRDIG NLP LL+AIVAELP D STMLRIGMTNPPFILEHL EIA V
Sbjct: 235 REIWLSSEDTGAYGRDIGTNLPNLLSAIVAELPADRSTMLRIGMTNPPFILEHLNEIASV 294
Query: 299 LRHPCVYSFLHVPVQSGSDAVL 320
LRHPCVY+FLHVPVQSGSDAVL
Sbjct: 295 LRHPCVYTFLHVPVQSGSDAVL 316
>gi|242075846|ref|XP_002447859.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
gi|241939042|gb|EES12187.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
Length = 623
Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust.
Identities = 252/331 (76%), Positives = 281/331 (84%), Gaps = 16/331 (4%)
Query: 1 MEDIEDLL--AGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L A GGGAPPG RLP+ AV V PK S+ P +
Sbjct: 1 MEDIEDVLGPADLSGGGAPPGLRLPLAAVAVKPKRRS----------SRVAQAPPQPEAR 50
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM
Sbjct: 51 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 110
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 111 TTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLL 170
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV+
Sbjct: 171 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVV 230
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
++GV+E+WLSSEDTGAYGRDI NLP LLNAIVAELP D STMLRIGMTNPPFILEHLKE
Sbjct: 231 SEGVREIWLSSEDTGAYGRDISTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKE 290
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
IA VL HPCVYSFLHVPVQSGSDAVL+ +
Sbjct: 291 IAAVLCHPCVYSFLHVPVQSGSDAVLTAMNR 321
>gi|194693708|gb|ACF80938.1| unknown [Zea mays]
gi|413918351|gb|AFW58283.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
Length = 626
Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust.
Identities = 249/326 (76%), Positives = 279/326 (85%), Gaps = 16/326 (4%)
Query: 1 MEDIEDLLAGSGGGGA--PPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK---- 54
MEDIED+L +G G PPG RLP+ AV V PK S+ P+
Sbjct: 1 MEDIEDVLGAAGLSGGGAPPGLRLPLAAVAVKPKRRS----------SRVAQAPPQPEAG 50
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T++ E AD+WLINTCTVK+PSQSAM
Sbjct: 51 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEDPEGADLWLINTCTVKNPSQSAM 110
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 111 TTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLL 170
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV+
Sbjct: 171 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVV 230
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLKE
Sbjct: 231 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKE 290
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL 320
IA VL HPCVYSFLHVPVQSGSD+VL
Sbjct: 291 IAAVLCHPCVYSFLHVPVQSGSDSVL 316
>gi|38345374|emb|CAD40910.2| OSJNBa0088K19.13 [Oryza sativa Japonica Group]
Length = 626
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 249/331 (75%), Positives = 278/331 (83%), Gaps = 15/331 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV V PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM
Sbjct: 54 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 113
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 114 TTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL 173
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+
Sbjct: 174 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVV 233
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
++GV+E+WLSSEDTGAYGRDIG NLP LLN I AELP D STMLRIGMTNPPFILEHLKE
Sbjct: 234 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKE 293
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
IA VL HPCVYSFLHVPVQSGSDAVL+ +
Sbjct: 294 IASVLCHPCVYSFLHVPVQSGSDAVLTAMNR 324
>gi|413918350|gb|AFW58282.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
Length = 318
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 250/328 (76%), Positives = 280/328 (85%), Gaps = 16/328 (4%)
Query: 1 MEDIEDLLAGSGGGGA--PPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK---- 54
MEDIED+L +G G PPG RLP+ AV V PK S+ P+
Sbjct: 1 MEDIEDVLGAAGLSGGGAPPGLRLPLAAVAVKPKRRS----------SRVAQAPPQPEAG 50
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T++ E AD+WLINTCTVK+PSQSAM
Sbjct: 51 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEDPEGADLWLINTCTVKNPSQSAM 110
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 111 TTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLL 170
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV+
Sbjct: 171 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVV 230
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLKE
Sbjct: 231 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKE 290
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
IA VL HPCVYSFLHVPVQSGSD+VL V
Sbjct: 291 IAAVLCHPCVYSFLHVPVQSGSDSVLKV 318
>gi|218194881|gb|EEC77308.1| hypothetical protein OsI_15965 [Oryza sativa Indica Group]
Length = 629
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 249/334 (74%), Positives = 279/334 (83%), Gaps = 18/334 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV + PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVALKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQ---SDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
IPGT+TIY+KTFGCSHNQ SDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQ
Sbjct: 54 IPGTQTIYVKTFGCSHNQASFSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQ 113
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
SAM TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEV
Sbjct: 114 SAMTTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEV 173
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
RLL RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+
Sbjct: 174 RLLSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVK 233
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
V+++GV+E+WLSSEDTGAYGRDIG NLP LLN IVAELP D STMLRIGMTNPPFILEH
Sbjct: 234 IVVSEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIVAELPADRSTMLRIGMTNPPFILEH 293
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
LKEIA VL HPCVYSFLHVPVQSGSDAVL+ +
Sbjct: 294 LKEIASVLCHPCVYSFLHVPVQSGSDAVLTAMNR 327
>gi|115458480|ref|NP_001052840.1| Os04g0434300 [Oryza sativa Japonica Group]
gi|113564411|dbj|BAF14754.1| Os04g0434300, partial [Oryza sativa Japonica Group]
Length = 621
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/310 (77%), Positives = 267/310 (86%), Gaps = 13/310 (4%)
Query: 20 FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----KIPGTETIYMKTFGCSHNQSDS 75
RLP+ AV V PK +PR S+ P +IPGT+TIY+KTFGCSHNQSDS
Sbjct: 19 LRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEARIPGTQTIYVKTFGCSHNQSDS 69
Query: 76 EYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVP 135
EYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM TLI+KCKSA KPLVVAGCVP
Sbjct: 70 EYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANKPLVVAGCVP 129
Query: 136 QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEI 195
QGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL RK LP+LDLPKVR+NKF+EI
Sbjct: 130 QGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLLSRKTLPSLDLPKVRKNKFIEI 189
Query: 196 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 255
LPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+++GV+E+WLSSEDTGAYGRDI
Sbjct: 190 LPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVVSEGVREIWLSSEDTGAYGRDI 249
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 315
G NLP LLN I AELP D STMLRIGMTNPPFILEHLKEIA VL HPCVYSFLHVPVQSG
Sbjct: 250 GTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKEIASVLCHPCVYSFLHVPVQSG 309
Query: 316 SDAVLSVSQK 325
SDAVL+ +
Sbjct: 310 SDAVLTAMNR 319
>gi|222628903|gb|EEE61035.1| hypothetical protein OsJ_14875 [Oryza sativa Japonica Group]
Length = 613
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 238/331 (71%), Positives = 265/331 (80%), Gaps = 28/331 (8%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV V PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT QSDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM
Sbjct: 54 IPGT-------------QSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 100
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 101 TTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL 160
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+
Sbjct: 161 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVV 220
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
++GV+E+WLSSEDTGAYGRDIG NLP LLN I AELP D STMLRIGMTNPPFILEHLKE
Sbjct: 221 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKE 280
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
IA VL HPCVYSFLHVPVQSGSDAVL+ +
Sbjct: 281 IASVLCHPCVYSFLHVPVQSGSDAVLTAMNR 311
>gi|296081133|emb|CBI18159.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/248 (89%), Positives = 237/248 (95%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
MAGQL+AFGY L+DN EEAD+WLINTCTVKSPSQSAMDTLI K +S+KKPLVVAGCVPQG
Sbjct: 1 MAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITKGRSSKKPLVVAGCVPQG 60
Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILP 197
SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LPALDLPKVR+NKFVEILP
Sbjct: 61 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLPALDLPKVRKNKFVEILP 120
Query: 198 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 257
INVGCLGACTYCKTKHARGHLGSYTV+SLVGRVRTVIADGVKE+WLSSEDTGAYGRDIGV
Sbjct: 121 INVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVKEIWLSSEDTGAYGRDIGV 180
Query: 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
LPILLNAIV+ELPPDG TMLRIGMTNPP+ILEHLKE+A VLRHPCVYSFLHVPVQSGSD
Sbjct: 181 TLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEMAVVLRHPCVYSFLHVPVQSGSD 240
Query: 318 AVLSVSQK 325
A+LS +
Sbjct: 241 AILSAMNR 248
>gi|168060037|ref|XP_001782005.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666496|gb|EDQ53148.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 489
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 224/333 (67%), Positives = 260/333 (78%), Gaps = 20/333 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLP-------------INAVGVNPKYNKNKPRLHDNHLSK 47
MEDIED++ GG AP G LP NAV + P+ R+ + K
Sbjct: 1 MEDIEDMIGDFGG--APLGLHLPKTDSTSGSGRRNGTNAVTIKPRR-----RISAHSGGK 53
Query: 48 TGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVK 107
S + +T+Y+KTFGCSHNQSDSEYMAGQLS +GY++TD + AD+WLINTCTVK
Sbjct: 54 ESIDSVVLVAMQTVYLKTFGCSHNQSDSEYMAGQLSDYGYSVTDAPDGADLWLINTCTVK 113
Query: 108 SPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK 167
+PSQSAM+ LI K K A KPLVVAGCVPQG ++LK+LEGVS+VGVQQIDRVVEVVEETLK
Sbjct: 114 NPSQSAMENLIRKGKDAGKPLVVAGCVPQGDKNLKDLEGVSVVGVQQIDRVVEVVEETLK 173
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
GHEVRLL R LP+LDLPKVR+NKFVEI+PINVGCLGACTYCKTKHARGHLGSY + SLV
Sbjct: 174 GHEVRLLRRSSLPSLDLPKVRKNKFVEIVPINVGCLGACTYCKTKHARGHLGSYPLASLV 233
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
RV+ V+A+GVKE+WLSSEDTGAYG D+G +LP LLNA+V LP D S MLRIGMTNPP+
Sbjct: 234 DRVKGVVAEGVKEIWLSSEDTGAYGIDLGTDLPTLLNALVDVLPKDRSCMLRIGMTNPPY 293
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
IL+HL+ IA +L HPCVYSFLHVPVQSGSD VL
Sbjct: 294 ILKHLESIAAILNHPCVYSFLHVPVQSGSDNVL 326
>gi|302799254|ref|XP_002981386.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
gi|300150926|gb|EFJ17574.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
Length = 421
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/266 (75%), Positives = 243/266 (91%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
TI++KTFGC+HNQSDSEYMAGQL A+GY ++++ +EAD+WLINTCTVK+PSQSAM+TLI
Sbjct: 1 TIFVKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETLIR 60
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K+ PLV+AGCVPQGS+DLK+LEGVS+VGVQQI RVVEVVEETLKGHEV+LL R L
Sbjct: 61 KGKAQTIPLVIAGCVPQGSKDLKDLEGVSVVGVQQIQRVVEVVEETLKGHEVKLLRRSTL 120
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P+LDLPKVR+NKFVEI+PINVGCLG+CTYCKTKHARGHLGSY +E+LV R++ V+++GV
Sbjct: 121 PSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYKIEALVKRLQGVVSEGVT 180
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+WLSSEDTGAYGRDIG ++P LL+A+VAELP D S MLRIGMTNPP+IL+HLKEIAE+L
Sbjct: 181 EIWLSSEDTGAYGRDIGTDIPTLLHALVAELPRDRSVMLRIGMTNPPYILQHLKEIAEIL 240
Query: 300 RHPCVYSFLHVPVQSGSDAVLSVSQK 325
RHPCVYSFLHVPVQSGSD+VL+ ++
Sbjct: 241 RHPCVYSFLHVPVQSGSDSVLAAMKR 266
>gi|302772983|ref|XP_002969909.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
gi|300162420|gb|EFJ29033.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
Length = 421
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 202/266 (75%), Positives = 241/266 (90%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
TI++KTFGC+HNQSDSEYMAGQL A+GY ++++ +EAD+WLINTCTVK+PSQSAM+TLI
Sbjct: 1 TIFLKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETLIR 60
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K+ PLV+AGCVPQGS+DLK+LEGVS+VGVQQI RVVEVVEETLKGHEV+LL R L
Sbjct: 61 KGKAQTIPLVIAGCVPQGSKDLKDLEGVSVVGVQQIQRVVEVVEETLKGHEVKLLRRSTL 120
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P+LDLPKVR+NKFVEI+PINVGCLG+CTYCKTKHARGHLGSY +E+LV R++ V+++GV
Sbjct: 121 PSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYKIEALVKRLQGVVSEGVT 180
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+WLSSEDTGAYGRDIG ++P LL A+VAELP D S MLRIGMTNPP+IL+HLKEIAE+L
Sbjct: 181 EIWLSSEDTGAYGRDIGSDIPTLLRALVAELPRDRSVMLRIGMTNPPYILQHLKEIAEIL 240
Query: 300 RHPCVYSFLHVPVQSGSDAVLSVSQK 325
RHPCVYSFLHVPVQSGSD+VL ++
Sbjct: 241 RHPCVYSFLHVPVQSGSDSVLEAMKR 266
>gi|159475142|ref|XP_001695682.1| predicted protein [Chlamydomonas reinhardtii]
gi|158275693|gb|EDP01469.1| predicted protein [Chlamydomonas reinhardtii]
Length = 435
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/274 (65%), Positives = 223/274 (81%), Gaps = 3/274 (1%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE--ADIWLINTCTVKSPSQS 112
+PGT+ +++KTFGCSHN SDSEYMAGQLS +GY L +++E AD+WLIN+CTVK PSQ+
Sbjct: 3 VPGTQAVWVKTFGCSHNISDSEYMAGQLSDYGYRLVEDAERDAADLWLINSCTVKGPSQA 62
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
M LIA K+ K +VVAGCVPQG + L EL+GVS++GV QIDRVVE VEETL+G+ V
Sbjct: 63 GMSNLIAAGKAGGKRVVVAGCVPQGDKKLPELQGVSVLGVTQIDRVVEAVEETLRGNTVS 122
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+L +K LP LDLPKVRRNK +EI+PI+ GCLGACTYCKTKHARGHLGSY +L RVR
Sbjct: 123 MLAKKALPRLDLPKVRRNKHIEIVPISTGCLGACTYCKTKHARGHLGSYDPAALAERVRQ 182
Query: 233 VIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
AD V+E+WLSSEDTGAYGRDIG +LP LL+ ++A LPPDG T+LR+GMTNPP++LEH
Sbjct: 183 AAADPWVREIWLSSEDTGAYGRDIGSSLPELLDKLIAVLPPDGRTLLRVGMTNPPYVLEH 242
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L+ + + LRHPCV+S+LHVPVQS SDAVL ++
Sbjct: 243 LEALCKALRHPCVFSYLHVPVQSASDAVLEAMKR 276
>gi|302846252|ref|XP_002954663.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
nagariensis]
gi|300260082|gb|EFJ44304.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
nagariensis]
Length = 401
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/273 (65%), Positives = 224/273 (82%), Gaps = 2/273 (0%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYAL-TDNSEEADIWLINTCTVKSPSQSA 113
+PGT+ +++KTFGCSHN SDSEYMAGQL +GY + AD+WLIN+CTVK PSQ+
Sbjct: 3 VPGTQAVWVKTFGCSHNISDSEYMAGQLQDYGYRRESAGCNPADLWLINSCTVKGPSQAG 62
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
M +LIA ++ K L+VAGCVPQG + L EL+GVS++GV QIDRVVE VEETL+G+ VRL
Sbjct: 63 MSSLIAVGRAGGKRLLVAGCVPQGDKRLPELQGVSVLGVTQIDRVVEAVEETLRGNTVRL 122
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L +K+LP LDLPKVRRN+ +EI+PI+ GCLGACTYCKTKHARGHLGSY +LV RVR
Sbjct: 123 LAKKELPRLDLPKVRRNRHIEIVPISTGCLGACTYCKTKHARGHLGSYDPAALVERVRQA 182
Query: 234 IAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
AD V+E+W+SSEDTGAYGRDIG +LP LL+A++A LPPDG TMLR+GMTNPP++LEHL
Sbjct: 183 AADPWVREIWISSEDTGAYGRDIGCSLPELLDALIAVLPPDGRTMLRVGMTNPPYVLEHL 242
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ ++ LRHPCV+S+LHVPVQSGSDAVL ++
Sbjct: 243 EALSAALRHPCVFSYLHVPVQSGSDAVLDSMKR 275
>gi|145344300|ref|XP_001416674.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576900|gb|ABO94967.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 516
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 213/265 (80%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
PGT I++ TFGCSHN SDSE+MAGQL +GY L D E+AD WL+NTCTVK+PSQSAM+
Sbjct: 35 PGTAKIFVHTFGCSHNHSDSEFMAGQLRRYGYELVDAPEKADGWLVNTCTVKNPSQSAMN 94
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
T+I + K+A K +V+AGCVPQG + KEL VS++GV QIDRVVE +E TL G VR+L
Sbjct: 95 TVIERGKAANKAMVIAGCVPQGDKGAKELRDVSLLGVTQIDRVVEAMERTLAGDTVRMLE 154
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+K LP+LDLPKVRRN+FVEILP++ GCLGACTYCKTKHARG LGSY + +LV RV +A
Sbjct: 155 KKALPSLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGSYEISALVSRVEQAMA 214
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+GV EVWLSSEDTGAYG D+G ++ L AI A LP DGS MLR+GMTNPP+IL HL +
Sbjct: 215 EGVSEVWLSSEDTGAYGIDLGTDVAALFRAITAVLPTDGSVMLRLGMTNPPYILAHLDAV 274
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVL 320
AE +RHP VY+++H+PVQSGS+AVL
Sbjct: 275 AEAMRHPSVYAWMHIPVQSGSNAVL 299
>gi|255075877|ref|XP_002501613.1| predicted protein [Micromonas sp. RCC299]
gi|226516877|gb|ACO62871.1| predicted protein [Micromonas sp. RCC299]
Length = 435
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 173/266 (65%), Positives = 217/266 (81%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PG +++KTFGCSHN SDSE+MAGQL A+GY L + ++AD+W++NTCTVK+PSQSAM
Sbjct: 3 VPGVAKVHVKTFGCSHNHSDSEFMAGQLGAYGYDLVTDPDDADVWVVNTCTVKNPSQSAM 62
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+T+I K K+ K LV+AGCVPQG + KELE +S++GV QIDR+V+VVE TL G VRLL
Sbjct: 63 NTVITKGKAQGKKLVIAGCVPQGDKKAKELEDLSLIGVTQIDRIVDVVERTLAGDAVRLL 122
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+K LP+LDLPKVRRN+ VEILP++ GCLG CTYCKTKHARG LGSY+ E+LV RV+T I
Sbjct: 123 EKKPLPSLDLPKVRRNEHVEILPLSTGCLGQCTYCKTKHARGELGSYSPEALVQRVQTAI 182
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
A+GV E+WLSSEDTGAYG D+G ++ LL + A LP DGS MLR+GMTNPP+IL HL
Sbjct: 183 AEGVTEIWLSSEDTGAYGIDLGTDITRLLRDLTAVLPTDGSCMLRLGMTNPPYILAHLDA 242
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL 320
+AE + HP VY+FLH+PVQ+GSDAVL
Sbjct: 243 VAEAMHHPSVYAFLHIPVQAGSDAVL 268
>gi|303286521|ref|XP_003062550.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456067|gb|EEH53369.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 542
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 171/266 (64%), Positives = 219/266 (82%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PG ++++TFGCSHN SDSE+MAGQLSA+GY LT + E+AD+W++NTCTVK+PSQSAM
Sbjct: 108 VPGRAKVHVRTFGCSHNISDSEFMAGQLSAYGYTLTTSPEDADLWVVNTCTVKNPSQSAM 167
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+T+I + K+A K LV+AGCVPQG ++ +EL+ ++++GV QIDRVVE VE TL G VR+L
Sbjct: 168 NTVIERGKAAGKKLVIAGCVPQGDKNARELDDLTLLGVTQIDRVVEAVERTLAGDAVRML 227
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+K LPALDLPK+RRN+ VEI+P++ GCLG CTYCKTKHARG LGSY E+LV RV+T I
Sbjct: 228 AKKTLPALDLPKIRRNEHVEIVPLSTGCLGKCTYCKTKHARGELGSYAPEALVARVQTAI 287
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
A+GV E+WLSSEDTGAYG D+G ++ LL + A LP DGS MLR+GMTNPP+IL HL
Sbjct: 288 AEGVTEIWLSSEDTGAYGIDLGTDVTRLLRDVTAALPKDGSCMLRLGMTNPPYILAHLDA 347
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL 320
+AE + HP VY+FLH+PVQ+GSDAVL
Sbjct: 348 VAEAMHHPGVYAFLHIPVQAGSDAVL 373
>gi|307110241|gb|EFN58477.1| hypothetical protein CHLNCDRAFT_19538, partial [Chlorella
variabilis]
Length = 499
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/274 (66%), Positives = 215/274 (78%), Gaps = 3/274 (1%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD--NSEEADIWLINTCTVKSPSQS 112
+PGT+ I++KTFGCSHN SDSEYM GQL +G+ L D +S AD+WL+NTCTVKSPSQS
Sbjct: 63 VPGTQRIWVKTFGCSHNSSDSEYMMGQLQEYGFKLVDEADSAAADLWLLNTCTVKSPSQS 122
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
AMDTL+ + + K L+VAGCVPQG R EL G+S++GV QIDRVVE VEETLKGH V+
Sbjct: 123 AMDTLLRRGRRLGKALLVAGCVPQGDRRTAELRGLSLLGVTQIDRVVEAVEETLKGHTVQ 182
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LL +K LP LDLPKVRRN+ +EILP++ GCLGACTYCKTKHARG LGSY LV R
Sbjct: 183 LLAKKALPRLDLPKVRRNRHIEILPLSTGCLGACTYCKTKHARGQLGSYDPAELVRRAAA 242
Query: 233 VIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
AD V+E+WLSSEDTGAYGRDIG +LP LL +V LPPDG MLR+GMTNPPFILEH
Sbjct: 243 AAADPQVREIWLSSEDTGAYGRDIGTSLPALLRELVEVLPPDGRCMLRVGMTNPPFILEH 302
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L E+ +LR V+S+LHVPVQSGSDAVL+ ++
Sbjct: 303 LAEVGAILRDDRVFSYLHVPVQSGSDAVLTAMRR 336
>gi|356523570|ref|XP_003530410.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
protein 1-like 1-like [Glycine max]
Length = 518
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/216 (82%), Positives = 198/216 (91%)
Query: 110 SQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH 169
+QSAMDT+I K KS+ KPLVVAGCVPQGSRDLKEL+G+SIVGVQQI RVVE+VEETLKGH
Sbjct: 13 AQSAMDTIITKGKSSNKPLVVAGCVPQGSRDLKELQGISIVGVQQIHRVVEIVEETLKGH 72
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
EVRLL RKKLP LDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLV R
Sbjct: 73 EVRLLTRKKLPTLDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVRR 132
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
V++VI++GV E+WLSSEDTGA GRDIGVN P LLNA+VAELP D STMLRIGMTNPP+IL
Sbjct: 133 VKSVISEGVXEIWLSSEDTGASGRDIGVNPPTLLNALVAELPADASTMLRIGMTNPPYIL 192
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
EHLK IAE+LRHPCVYSFLHVPVQSGSD +LS +
Sbjct: 193 EHLKXIAEILRHPCVYSFLHVPVQSGSDTILSAMNR 228
>gi|223944159|gb|ACN26163.1| unknown [Zea mays]
gi|413918349|gb|AFW58281.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
Length = 517
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/207 (85%), Positives = 195/207 (94%)
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
M TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRL
Sbjct: 1 MTTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRL 60
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV
Sbjct: 61 LSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTV 120
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLK
Sbjct: 121 VSEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLK 180
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
EIA VL HPCVYSFLHVPVQSGSD+VL
Sbjct: 181 EIAAVLCHPCVYSFLHVPVQSGSDSVL 207
>gi|308801795|ref|XP_003078211.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
gi|116056662|emb|CAL52951.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
Length = 558
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 169/265 (63%), Positives = 213/265 (80%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I++ TFGCSHN SDSE+MAGQL ++GY L ++ +AD WL+NTCTVK+PSQSAM+T++ +
Sbjct: 35 IFVHTFGCSHNHSDSEFMAGQLQSYGYELVKDASDADGWLVNTCTVKNPSQSAMNTVLER 94
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K+A K L+VAGCVPQG + KEL+ VS++GV QIDRVVE +E TL G VR+L +K LP
Sbjct: 95 GKAANKALLVAGCVPQGDKGAKELKDVSLLGVTQIDRVVEAMERTLAGDTVRMLEKKTLP 154
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
LDLPKVRRN+FVEILP++ GCLGACTYCKTKHARG LGSY + +LV RV I++GV E
Sbjct: 155 RLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGSYEISALVSRVEQAISEGVSE 214
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
VWLSSEDTGAYG D+G ++ L AI A LP DGS MLR+GMTNPP+IL HL +AE +R
Sbjct: 215 VWLSSEDTGAYGIDLGTDVAALFRAITAVLPTDGSVMLRLGMTNPPYILAHLDAVAEAMR 274
Query: 301 HPCVYSFLHVPVQSGSDAVLSVSQK 325
HP VY+++H+PVQSGS+AVL ++
Sbjct: 275 HPAVYAWMHIPVQSGSNAVLEAMKR 299
>gi|340509229|gb|EGR34782.1| hypothetical protein IMG5_001960 [Ichthyophthirius multifiliis]
Length = 587
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/333 (53%), Positives = 233/333 (69%), Gaps = 16/333 (4%)
Query: 3 DIEDLLAGSG-GGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK------- 54
D+EDL+ G+ RL N + PK + + L T S
Sbjct: 7 DLEDLIQGNELADEYTQNVRLKPNTIKKRPKKQLKQSEQKQDTLEHTADDSEIKFNQSTN 66
Query: 55 ------IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS 108
IPG + +Y+KTFGCSHN SDSE+M GQL+ +GY L +N +EADI L+N+CTVK+
Sbjct: 67 TQQNTIIPGIQNVYVKTFGCSHNISDSEFMMGQLAEYGYNLVENEKEADIILVNSCTVKN 126
Query: 109 PSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG 168
PSQ A T++ K K +VVAGCVPQG R++ LE VS++G+ QIDRVVEV+EETLKG
Sbjct: 127 PSQDAFMTVVKSAKQQNKHIVVAGCVPQGDRNIPGLEDVSVIGISQIDRVVEVIEETLKG 186
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ VRLL +K LP+LDLPK+R+N +EI+PIN GCLG+CTYCKTKHARG LGSYT+E+++
Sbjct: 187 NTVRLLGKKALPSLDLPKIRKNNLIEIIPINTGCLGSCTYCKTKHARGKLGSYTLEAILA 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R V +GVKE+WL+SEDTGAYGRDIG ++ LL +V +LP D MLRIGMTNPP+I
Sbjct: 247 RCEQVCEEGVKEIWLTSEDTGAYGRDIGTDISELLKHLVEKLPND--VMLRIGMTNPPYI 304
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
LEH++ I+ +L HP V+SFLH+PVQ+G++ VL
Sbjct: 305 LEHMENISLILNHPRVFSFLHIPVQAGNNTVLE 337
>gi|384253319|gb|EIE26794.1| hypothetical protein COCSUDRAFT_35241 [Coccomyxa subellipsoidea
C-169]
Length = 494
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 176/268 (65%), Positives = 212/268 (79%), Gaps = 3/268 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYAL--TDNSEEADIWLINTCTVKSPSQSAMDTLI 118
I++KTFGC+HN SDSEYM GQL +GY L D + AD+WL+NTCTVK+PSQ+AM TL+
Sbjct: 14 IWVKTFGCAHNMSDSEYMMGQLQDYGYRLLADDKQDAADLWLVNTCTVKNPSQAAMSTLV 73
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
A+ K+ K LVV GCVPQG + + EL+ +S++GV QIDRVVE VEETL+G+ V +L +KK
Sbjct: 74 ARGKALNKKLVVCGCVPQGDKKVPELQDLSLLGVTQIDRVVEAVEETLRGNVVHMLAKKK 133
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG- 237
LP LDLPKVRRN VEILP++ GCLGACTYCKTKHARG LGSY + +LV R D
Sbjct: 134 LPRLDLPKVRRNAHVEILPLSTGCLGACTYCKTKHARGQLGSYELSALVHRAAAAAVDPL 193
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
V+EVWLSSEDTGAYGRD+ +LP LL A+ A LP DG T+LRIGMTNPPFILEHL +IAE
Sbjct: 194 VREVWLSSEDTGAYGRDLDTSLPDLLRALTAALPSDGRTILRIGMTNPPFILEHLPDIAE 253
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L HPCV+S+LHVPVQSGSDAVL+ +
Sbjct: 254 ALNHPCVFSYLHVPVQSGSDAVLAAMNR 281
>gi|403368709|gb|EJY84195.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Oxytricha trifallax]
Length = 642
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 167/286 (58%), Positives = 221/286 (77%), Gaps = 2/286 (0%)
Query: 36 NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
N + +N + + K+PG + I++KT+GCSHN SDSEYMAG L+ +GY + DN +E
Sbjct: 71 NAQKFQNNVQDQPFEQNEKVPGAQKIFVKTYGCSHNISDSEYMAGLLAEYGYQIVDNMDE 130
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
AD L+N+CTVK+PSQ L+ K KKP++V+GCVPQG R++K LE VS++G+ QI
Sbjct: 131 ADACLLNSCTVKNPSQEKFVNLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQI 190
Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
DRVVEVVEE LKGH V+LL +K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HAR
Sbjct: 191 DRVVEVVEEALKGHNVKLLAKKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHAR 250
Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
G LGSY ++V R RT I +GV E+WL+SEDTGAYGRDIG +LP LL +++A +P
Sbjct: 251 GKLGSYDPNAIVERARTAIEEGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--H 308
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
TMLR+GMTNPP+ILEHL+ +A++L HP VYSFLHVPVQ+ S++VL
Sbjct: 309 TMLRVGMTNPPYILEHLQAMADILNHPRVYSFLHVPVQAASNSVLD 354
>gi|403375394|gb|EJY87671.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Oxytricha trifallax]
Length = 644
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 167/286 (58%), Positives = 221/286 (77%), Gaps = 2/286 (0%)
Query: 36 NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
N + +N + + K+PG + I++KT+GCSHN SDSEYMAG L+ +GY + DN +E
Sbjct: 73 NAQKFQNNIQDQPFEQNEKVPGAQKIFVKTYGCSHNISDSEYMAGLLAEYGYQIVDNMDE 132
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
AD L+N+CTVK+PSQ L+ K KKP++V+GCVPQG R++K LE VS++G+ QI
Sbjct: 133 ADACLLNSCTVKNPSQEKFVNLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQI 192
Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
DRVVEVVEE LKGH V+LL +K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HAR
Sbjct: 193 DRVVEVVEEALKGHNVKLLAKKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHAR 252
Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
G LGSY ++V R RT I +GV E+WL+SEDTGAYGRDIG +LP LL +++A +P
Sbjct: 253 GKLGSYDPNAIVERARTAIEEGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--H 310
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
TMLR+GMTNPP+ILEHL+ +A++L HP VYSFLHVPVQ+ S++VL
Sbjct: 311 TMLRVGMTNPPYILEHLQAMADILNHPRVYSFLHVPVQAASNSVLD 356
>gi|403356675|gb|EJY77936.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Oxytricha trifallax]
Length = 644
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 166/286 (58%), Positives = 221/286 (77%), Gaps = 2/286 (0%)
Query: 36 NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
N + +N + + K+PG + +++KT+GCSHN SDSEYMAG L+ +GY + DN +E
Sbjct: 73 NAQKFQNNIQDQPFEQNEKVPGAQKVFVKTYGCSHNISDSEYMAGLLAEYGYQIVDNMDE 132
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
AD L+N+CTVK+PSQ L+ K KKP++V+GCVPQG R++K LE VS++G+ QI
Sbjct: 133 ADACLLNSCTVKNPSQEKFVNLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQI 192
Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
DRVVEVVEE LKGH V+LL +K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HAR
Sbjct: 193 DRVVEVVEEALKGHNVKLLAKKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHAR 252
Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
G LGSY ++V R RT I +GV E+WL+SEDTGAYGRDIG +LP LL +++A +P
Sbjct: 253 GKLGSYDPNAIVERARTAIEEGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--H 310
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
TMLR+GMTNPP+ILEHL+ +A++L HP VYSFLHVPVQ+ S++VL
Sbjct: 311 TMLRVGMTNPPYILEHLQAMADILNHPRVYSFLHVPVQAASNSVLD 356
>gi|348685958|gb|EGZ25773.1| hypothetical protein PHYSODRAFT_555473 [Phytophthora sojae]
Length = 649
Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 175/268 (65%), Positives = 216/268 (80%), Gaps = 2/268 (0%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
P +PG++ I+MKT+GCSHN SDSEYM G L+++GY T + + A +WL+N+CTVK PSQ+
Sbjct: 56 PSVPGSQLIWMKTYGCSHNVSDSEYMQGVLASYGYRFTQDPDAAQLWLLNSCTVKDPSQA 115
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
A L+ K + K +VVAGCVPQ R LK LE VSIVG+QQ+DRVVEVVEETLKGH VR
Sbjct: 116 AFMHLVVKGRKQSKAVVVAGCVPQADRHLKGLEEVSIVGIQQVDRVVEVVEETLKGHTVR 175
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LL + +LP LDLPK+R+N VEI+P++ GCLGACTYCKT+HARG LGSYT E++V R +T
Sbjct: 176 LLSKNRLPELDLPKIRKNPMVEIIPLSTGCLGACTYCKTRHARGKLGSYTPEAIVSRAQT 235
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
VI++GV E+WLSSEDTGAYG DIG +LP LL ++ E+ PDG MLR+GMTNPP+IL+HL
Sbjct: 236 VISEGVTEIWLSSEDTGAYGIDIGTDLPTLLRKLL-EVVPDG-VMLRVGMTNPPYILDHL 293
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
IAEVL+H VYSFLHVPVQSGSD VL
Sbjct: 294 DAIAEVLKHERVYSFLHVPVQSGSDDVL 321
>gi|348512452|ref|XP_003443757.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Oreochromis niloticus]
Length = 516
Score = 359 bits (922), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 182/327 (55%), Positives = 229/327 (70%), Gaps = 17/327 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIED+++ S P + P+ K K L D L + SL IPGT+
Sbjct: 9 MEDIEDMVSSSD----PTPHERQSARKSIIPRSRKKKELLSDEEL-QADSL---IPGTQK 60
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+MKT+GCSHN SD EYMAGQL+A GY +TD+ EAD+WL+N+CTVK+P++ I K
Sbjct: 61 IWMKTWGCSHNNSDGEYMAGQLAASGYKMTDDPTEADVWLLNSCTVKNPAEDHFRNSIKK 120
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ +K +VVAGCVPQ + L+G+SI+GVQQIDRVVEVV+E +KGH VRLL +KK
Sbjct: 121 AQDQEKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDG 180
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R R
Sbjct: 181 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS 240
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+P MLR+GMTNPP+ILEHL+
Sbjct: 241 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPE--GAMLRLGMTNPPYILEHLE 298
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLHVPVQS SD+VL
Sbjct: 299 EMAKILNHPRVYAFLHVPVQSASDSVL 325
>gi|196007898|ref|XP_002113815.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
gi|190584219|gb|EDV24289.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
Length = 529
Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 179/328 (54%), Positives = 237/328 (72%), Gaps = 10/328 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDN-HLSKTGSLSPKIPGTE 59
+EDIEDL++ ++ N V + + +K + + N + + IPGT+
Sbjct: 10 VEDIEDLISKEESYSVDVRSKISRNNVKLRSRPSKRQGKSDSNVEVDEKAVGDSIIPGTQ 69
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++T+GCSHN+SD EYMAGQLS++GY +T+ EEAD+WL+N+C VK+P++ + I
Sbjct: 70 GIYIRTWGCSHNKSDGEYMAGQLSSYGYKITEIPEEADLWLLNSCAVKNPAEDSFYNDIR 129
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K KK LV+AGCVPQG + ++G+S+VGVQQIDRVVEVVEETLKGH VRL +K+
Sbjct: 130 KAKELKKYLVLAGCVPQGQKRHPLMDGISVVGVQQIDRVVEVVEETLKGHSVRLFGQKRK 189
Query: 180 PA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L+LPK+R+N VEI+ IN GCL ACTYCKTKHARG LGSY +E +V R +T
Sbjct: 190 NGKKLGGAPLNLPKIRKNPLVEIIAINTGCLNACTYCKTKHARGDLGSYPIEDIVERAKT 249
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+W++SEDTGAYG DIGV+LP LL +V ++ PDG+ MLRIGMTNPP+ILEHL
Sbjct: 250 AFNEGVAEIWITSEDTGAYGIDIGVSLPDLLWQLV-KVIPDGA-MLRIGMTNPPYILEHL 307
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+E+A++L HP VYSFLHVPVQ+GSD VL
Sbjct: 308 EEMAKILSHPRVYSFLHVPVQAGSDKVL 335
>gi|387015104|gb|AFJ49671.1| CDK5 regulatory subunit associated protein 1-like 1 [Crotalus
adamanteus]
Length = 577
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 177/327 (54%), Positives = 232/327 (70%), Gaps = 14/327 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED+++ P F N + PK K + + + + IPG +
Sbjct: 9 LEDIEDIVSAED----PKPFDRQFNRKNIIPKVRKRQSQ-KNVEVDDPPPRDSVIPGIQK 63
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY++T+N+ EAD+WL+N+CTVKSP++ I K
Sbjct: 64 IWIRTWGCSHNSSDGEYMAGQLAAYGYSITENAAEADLWLLNSCTVKSPAEDHFRNSIKK 123
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ KK +V+AGCVPQ L G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 124 AQEGKKKIVLAGCVPQAQPRQDYLHGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 183
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY++E LV R +
Sbjct: 184 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYSIEELVNRGKQS 243
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 244 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 301
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLHVPVQS SD+VL
Sbjct: 302 EMAKILNHPRVYAFLHVPVQSASDSVL 328
>gi|301111844|ref|XP_002905001.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
infestans T30-4]
gi|262095331|gb|EEY53383.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
infestans T30-4]
Length = 624
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/268 (64%), Positives = 213/268 (79%), Gaps = 2/268 (0%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
P +PGT+ I++KT+GCSHN SDSEYM G L+++GY T + + A +WL+N+CTVK PSQ+
Sbjct: 55 PSVPGTQLIWIKTYGCSHNVSDSEYMQGVLASYGYRFTQDPDAAQLWLLNSCTVKDPSQA 114
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
A L K + K +VVAGCVPQ R LK LE VSIVG+QQ+DRVVEVVEETLKGH VR
Sbjct: 115 AFMHLAVKGRKQNKAVVVAGCVPQADRHLKGLEEVSIVGIQQVDRVVEVVEETLKGHTVR 174
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LL + +LP LDLPK+R+N VEI+P++ GCLGACTYCKT+HARG LGSYT E++V R +T
Sbjct: 175 LLAKNRLPELDLPKIRKNPMVEIIPLSTGCLGACTYCKTRHARGKLGSYTPEAIVSRAQT 234
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
VI +GV E+WLSSEDTGAYG DIG +LP L+ ++ E+ PDG MLR+GMTNPP+IL+HL
Sbjct: 235 VINEGVTEIWLSSEDTGAYGIDIGTDLPTLMRKLL-EVVPDG-IMLRVGMTNPPYILDHL 292
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
IAEVL H VYSFLHVPVQSGSD VL
Sbjct: 293 DAIAEVLNHERVYSFLHVPVQSGSDDVL 320
>gi|307190740|gb|EFN74642.1| CDKAL1-like protein [Camponotus floridanus]
Length = 542
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 181/328 (55%), Positives = 231/328 (70%), Gaps = 15/328 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+A P + V PK K + + + LS IPGT+T
Sbjct: 9 IEDIEDLIASQDI--TPKERYNSRKHITVRPKRRKQE----QEEVPQPPILSSIIPGTQT 62
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SD+EYMAGQL+ +GY L+D+ +AD+WL+N+CTVK+P++ I
Sbjct: 63 IYVKTWGCTHNNSDTEYMAGQLAMYGYNLSDDKLKADLWLLNSCTVKNPAEDQFRNEIEH 122
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
K K +V+AGCVPQG+ L+G+SI+GVQQIDRVVEVVEETLKG+ VR LH+KK
Sbjct: 123 GKKIGKHIVIAGCVPQGAPKSSFLQGLSIIGVQQIDRVVEVVEETLKGNTVRFLHQKKNS 182
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 183 GKKMGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYQPEEIVERAKQA 242
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V ++ PDG M+R+GMTNPP+ILEHL
Sbjct: 243 FEEGVCELWLTSEDTGAYGRDIGTSLPELLWKLV-DVIPDGC-MMRVGMTNPPYILEHLD 300
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
E+A++LRHP VYSFLH+PVQSGSD VL+
Sbjct: 301 EMAKILRHPKVYSFLHIPVQSGSDQVLA 328
>gi|322800811|gb|EFZ21687.1| hypothetical protein SINV_11782 [Solenopsis invicta]
Length = 538
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 181/328 (55%), Positives = 232/328 (70%), Gaps = 17/328 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+A P + V PK K + +S+ LS IPGT+T
Sbjct: 9 IEDIEDLIASQDI--TPKERYSSRKHITVRPKRRKQE------QVSQPSVLSSVIPGTQT 60
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SD+EYMAGQL+ +GY LT++ +AD+WL+N+CTVK+P++ I
Sbjct: 61 IYVKTWGCTHNSSDTEYMAGQLATYGYNLTEDKLKADLWLLNSCTVKNPAEDQFRNEIEH 120
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
K+ K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 121 GKNIGKHVVVAGCVPQGAPKSSFLQGLSVIGVQQIDRVVEVVEETLKGNTVRFLKQKKDS 180
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 181 GKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQA 240
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V ++ PDG M+R+GMTNPP+ILEHL
Sbjct: 241 FEEGVCELWLTSEDTGAYGRDIGTNLPELLWQLV-DVIPDGC-MMRVGMTNPPYILEHLD 298
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
E+A++L+HP VYSFLH+PVQSGSD VL+
Sbjct: 299 EMAKILQHPRVYSFLHIPVQSGSDQVLA 326
>gi|424513077|emb|CCO66661.1| predicted protein [Bathycoccus prasinos]
Length = 614
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 165/266 (62%), Positives = 214/266 (80%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT+ I++KTFGC+HN SDSE+M+GQL A+GY LTD+ EA++W++NTCTVK+PSQ+AM
Sbjct: 79 VPGTQRIHVKTFGCAHNHSDSEFMSGQLQAYGYKLTDDPSEANLWVVNTCTVKNPSQAAM 138
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+T++A+ K+ + P+VV GCVPQG + KEL VS++GV QIDR+VE VE TL+G V +L
Sbjct: 139 NTVLARAKTNEVPVVVCGCVPQGDQKAKELAEVSLLGVSQIDRIVEAVERTLRGERVLML 198
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+K LP LDLPKVRRN+ VEI+P++ GCLG CTYCKTKHARG LGSY +E+++GR + I
Sbjct: 199 EKKSLPKLDLPKVRRNERVEIIPLSTGCLGQCTYCKTKHARGELGSYEIEAIIGRAKLAI 258
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GV E+WLSSEDTGAYG DIG N+ L A+V LP D S MLR+GMTNPP+IL HL
Sbjct: 259 EEGVTEIWLSSEDTGAYGLDIGSNVAELFKALVDVLPADQSVMLRLGMTNPPYILAHLPA 318
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL 320
IAE +RHP V+S++H+PVQSGS VL
Sbjct: 319 IAEAMRHPSVFSWIHIPVQSGSSKVL 344
>gi|321479315|gb|EFX90271.1| hypothetical protein DAPPUDRAFT_300126 [Daphnia pulex]
Length = 560
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 188/336 (55%), Positives = 234/336 (69%), Gaps = 23/336 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK------ 54
++DIED++ G G A NAVG K K P D +KT + PK
Sbjct: 7 LDDIEDIV-GEGDLTALERSVARSNAVG---KRVKKTPNNKDP--AKTNKVIPKVEENGS 60
Query: 55 -IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
IPGT+ I++KT+GC+HN SDSEYMAGQL+A+GY+LTD EAD+WL+N+CTVK+P++
Sbjct: 61 IIPGTQKIWVKTWGCAHNNSDSEYMAGQLAAYGYSLTDEKYEADLWLLNSCTVKTPAEDH 120
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
I ++ P+VVAGCVPQG L+G+SI+GVQQIDRVVEVVEETLKGH VRL
Sbjct: 121 FKNEIDDGRARGTPVVVAGCVPQGQPKANYLQGLSIIGVQQIDRVVEVVEETLKGHSVRL 180
Query: 174 LHRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
L KK +L LPK+R+N +EI+PIN GCL CTYCKTKHARG LGSY E
Sbjct: 181 LGTKKDAEKKKTGGASLLLPKIRKNPLIEIIPINTGCLNQCTYCKTKHARGELGSYPPEE 240
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V R +GV E+WL+SEDTGAYGRDIG +LP LL +V ++ PDG MLR+GMTNP
Sbjct: 241 IVARAIQSFQEGVCEIWLTSEDTGAYGRDIGSSLPELLRQLV-QVIPDG-CMLRLGMTNP 298
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
P+ILEHL+ IAE+L HP VY+FLH+PVQSGSD VL+
Sbjct: 299 PYILEHLEAIAEILNHPRVYAFLHLPVQSGSDCVLT 334
>gi|363730366|ref|XP_418914.3| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
[Gallus gallus]
Length = 582
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 177/327 (54%), Positives = 230/327 (70%), Gaps = 14/327 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED++ S P +R V + ++ R + S+ IPG +
Sbjct: 9 LEDIEDIV--SAQDLKPRDWRFVRKNVFPKVRKRSSQQRAQTDDDPPHDSV---IPGIQK 63
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+CTVK+P++ I K
Sbjct: 64 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAEDHFRNSIKK 123
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ A K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 124 AQEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 183
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R +
Sbjct: 184 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRAKQS 243
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 244 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPYILEHLE 301
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 302 EMAKILNHPRVYAFLHIPVQSASDSVL 328
>gi|156382226|ref|XP_001632455.1| predicted protein [Nematostella vectensis]
gi|156219511|gb|EDO40392.1| predicted protein [Nematostella vectensis]
Length = 555
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 169/274 (61%), Positives = 208/274 (75%), Gaps = 9/274 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY++T+GCSHN SDSEYMAGQL+A+GY +TD+ + AD+WL+N+CTVKSP++
Sbjct: 58 IPGTQTIYVRTWGCSHNNSDSEYMAGQLAAYGYKITDDEQCADLWLLNSCTVKSPAEDGF 117
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K+ K LVVAGCVPQG ++G+S+VGVQQIDRVVEVVEETLKGH VRL
Sbjct: 118 RNAIKKAKAQGKHLVVAGCVPQGQPRHDTVKGISVVGVQQIDRVVEVVEETLKGHTVRLF 177
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK +LDLPK+R+N VEI+ IN GCL CTYCKTKHARG LGSY E +V
Sbjct: 178 GQKKADGKKTGGASLDLPKIRKNPLVEIIAINTGCLNQCTYCKTKHARGDLGSYPPEEIV 237
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYG+DIGV LP LL +V +P G +RIGMTNPP+
Sbjct: 238 NRAKQAFNEGVVEMWLTSEDTGAYGKDIGVTLPELLWQLVKVIPEGGR--MRIGMTNPPY 295
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
ILEHL+E+A++L HP VYSFLHVPVQS S VL+
Sbjct: 296 ILEHLEEMAKILNHPRVYSFLHVPVQSASTNVLA 329
>gi|224045698|ref|XP_002191115.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Taeniopygia guttata]
Length = 582
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 166/273 (60%), Positives = 212/273 (77%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+CTVK+P++
Sbjct: 58 IPGVQKIWIRTWGCSHNNSDGEYMAGQLAAYGYTITDNSAEADLWLLNSCTVKNPAEDHF 117
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + KK +V+AGCVPQ + L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 118 RNSIKKAQEGKKKVVLAGCVPQAQPRQEYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 177
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 178 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 237
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 238 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPKLLWKLV-EVIPEGA-MLRLGMTNPPY 295
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 296 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVL 328
>gi|405952652|gb|EKC20438.1| hypothetical protein CGI_10006004 [Crassostrea gigas]
Length = 536
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 165/273 (60%), Positives = 210/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GCSHN SDSEYMAGQL+++GY +TD+SE AD+WL+N+CTVK+P++
Sbjct: 64 IPGTQKVWLKTWGCSHNNSDSEYMAGQLASYGYKITDDSESADLWLLNSCTVKNPAEDHF 123
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + +K +VVAGCVPQG L+G+S++GVQQIDRV EVVEETLKGH VRL
Sbjct: 124 RNEIKKAREKQKKIVVAGCVPQGQPRTDYLQGLSVIGVQQIDRVTEVVEETLKGHSVRLY 183
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KKL AL LPK+R+N +EI+ IN GCL CTYCKTKHARG LGSY + +V
Sbjct: 184 GQKKLEGKKVGGAALSLPKIRKNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIV 243
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SED GAYG DIGV LP LL +V E+ P+G+ M R+GMTNPP+
Sbjct: 244 ARAKQSFEEGVIEIWLTSEDLGAYGHDIGVTLPQLLWKLV-EVIPEGARM-RLGMTNPPY 301
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++LRHP VYSFLHVPVQS SD+VL
Sbjct: 302 ILEHLEEMAKILRHPRVYSFLHVPVQSASDSVL 334
>gi|45361233|ref|NP_989194.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Xenopus
(Silurana) tropicalis]
gi|82186429|sp|Q6P4Y0.1|CDKAL_XENTR RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|38649005|gb|AAH63205.1| CDK5 regulatory subunit associated protein 1-like 1 [Xenopus
(Silurana) tropicalis]
Length = 553
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 178/329 (54%), Positives = 234/329 (71%), Gaps = 20/329 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPI--NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
++DIED+++ + P R N V K NKNK + + T IPGT
Sbjct: 9 LDDIEDIVSATD---PKPHDRQNARQNIVPRARKRNKNKIQEEEPPADST------IPGT 59
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ I+++T+GCSHN SD EYMAGQL+A+GY++T+ E+AD+WL+N+CTVKSP++ I
Sbjct: 60 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEQADLWLLNSCTVKSPAEDHFRNSI 119
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K + A K +V++GCVPQ + ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 120 KKAQEANKKVVLSGCVPQAQPRQEYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 179
Query: 179 L-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV R
Sbjct: 180 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRAA 239
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 240 QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEH 297
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 298 LEEMAKILNHPRVYAFLHIPVQSASDSVL 326
>gi|332024358|gb|EGI64557.1| CDKAL1-like protein [Acromyrmex echinatior]
Length = 539
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 179/328 (54%), Positives = 229/328 (69%), Gaps = 15/328 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+A P + + PK K +S+ LS IPGT+T
Sbjct: 9 IEDIEDLIASQDI--TPKERYNSRKHITIRPKRRKQL----QEEVSQPSILSSIIPGTQT 62
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SD+EYM GQL+++GY LT++ +AD+WL+N+CTVKSP++ I
Sbjct: 63 IYVKTWGCTHNSSDTEYMTGQLASYGYNLTEDKLKADLWLLNSCTVKSPAEDQFRNEIEY 122
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
K K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 123 GKKIGKHVVVAGCVPQGAPKSSFLQGLSVIGVQQIDRVVEVVEETLKGNTVRFLQQKKDL 182
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+L+LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 183 GKKTGGASLNLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQA 242
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL ++ ++ PDG M+RIGMTNPP+ILEHL
Sbjct: 243 FEEGVCELWLTSEDTGAYGRDIGTNLPKLLWQLI-DVIPDGC-MMRIGMTNPPYILEHLD 300
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
E+ ++LRH VYSFLH+PVQSGSD VL+
Sbjct: 301 EMTKILRHSKVYSFLHIPVQSGSDHVLA 328
>gi|383859676|ref|XP_003705318.1| PREDICTED: CDKAL1-like protein-like [Megachile rotundata]
Length = 540
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 178/328 (54%), Positives = 230/328 (70%), Gaps = 16/328 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+ S P + V K N+ + L + + +PGT+T
Sbjct: 9 IEDIEDLI--SSQDITPKERYSSRKNITVRSKRNQLR-----EELPQPPVFNSIVPGTQT 61
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SDSEYMAGQL+A+GY LT++ +AD+WL+N+CTVKSP++ I
Sbjct: 62 IYVKTWGCTHNSSDSEYMAGQLAAYGYRLTEDKSKADLWLLNSCTVKSPAEDHFRNEIEA 121
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 122 GRKQGKHIVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNSVRFLQQKKEA 181
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 182 GKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQA 241
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTG YGRDIG +LP LL ++ E+ PDG M+R+GMTNPP+ILEHL+
Sbjct: 242 FEEGVCELWLTSEDTGTYGRDIGTSLPELLWKLI-EVVPDGC-MIRVGMTNPPYILEHLE 299
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
E++++LRHP VYSFLHVPVQSGSD VL+
Sbjct: 300 EMSKILRHPKVYSFLHVPVQSGSDQVLA 327
>gi|410905177|ref|XP_003966068.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Takifugu rubripes]
Length = 613
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 166/273 (60%), Positives = 207/273 (75%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ I+MKT+GCSHN SD EYMAGQL+A GY +TD+ EAD+WL+N+CTVK+P++
Sbjct: 53 IPGTQKIWMKTWGCSHNNSDGEYMAGQLAASGYKITDDPIEADLWLLNSCTVKNPAEDHF 112
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + +K +VVAGCVPQ + L+G+SI+GVQQIDRVVEVV+E +KGH VRLL
Sbjct: 113 RNSIKKAQEQQKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLL 172
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 173 GQKKDGGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 232
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R +GV E+WL+SEDTGAYGRDIG +LP LL +V E+P MLR+GMTNPP+
Sbjct: 233 ERTRQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPE--GAMLRLGMTNPPY 290
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLHVPVQS SD+VL
Sbjct: 291 ILEHLEEMAKILSHPRVYAFLHVPVQSASDSVL 323
>gi|147902192|ref|NP_001084956.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Xenopus
laevis]
gi|82185344|sp|Q6NS26.1|CDKAL_XENLA RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|47122802|gb|AAH70521.1| MGC78779 protein [Xenopus laevis]
Length = 556
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 178/329 (54%), Positives = 232/329 (70%), Gaps = 20/329 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPI--NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
++DIED+++ + P R N V K NKN + + T IPGT
Sbjct: 9 LDDIEDMVSATD---PKPHDRQSARKNIVPRARKRNKNNIQEEEPPADST------IPGT 59
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ I+++T+GCSHN SD EYMAGQL+A+GY++T+ E+AD+WL+N+CTVKSP++ I
Sbjct: 60 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEKADLWLLNSCTVKSPAEDHFRNSI 119
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K + A K +VV+GCVPQ ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 120 KKAQEANKKVVVSGCVPQAQPRQDYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 179
Query: 179 L-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV R
Sbjct: 180 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRAT 239
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 240 QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEH 297
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 298 LEEMAKILNHPRVYAFLHIPVQSASDSVL 326
>gi|74003946|ref|XP_849433.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
isoform 3 [Canis lupus familiaris]
gi|402783749|dbj|BAM37954.1| CDK5 regulatory subunit-associated protein 1-like 1 [Canis lupus
familiaris]
Length = 578
Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 162/273 (59%), Positives = 209/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ EAD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASEADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ +G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYFKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ +N GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKANGKRLGGARLDLPKIRKNPLIEIISVNTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD VL
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVL 329
>gi|410252052|gb|JAA13993.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
gi|410291158|gb|JAA24179.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
gi|410291160|gb|JAA24180.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
Length = 579
Score = 347 bits (889), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 231/327 (70%), Gaps = 13/327 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVL 330
>gi|355677418|gb|AER95991.1| CDK5 regulatory subunit associated protein 1-like 1 [Mustela
putorius furo]
Length = 411
Score = 347 bits (889), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 177/327 (54%), Positives = 231/327 (70%), Gaps = 14/327 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED+++ G P R V PK K + + + S S IPG +
Sbjct: 10 LEDIEDIVSQ---GDLKPQDRHSARK-HVVPKARKRNTQKYLQEENSPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWLRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY +E LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIEELVERAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD VL
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDTVL 329
>gi|397505362|ref|XP_003823235.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Pan paniscus]
gi|410220836|gb|JAA07637.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
gi|410329393|gb|JAA33643.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
Length = 579
Score = 347 bits (889), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 231/327 (70%), Gaps = 13/327 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVL 330
>gi|93277076|ref|NP_060244.2| threonylcarbamoyladenosine tRNA methylthiotransferase [Homo
sapiens]
gi|74747199|sp|Q5VV42.1|CDKAL_HUMAN RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|111309189|gb|AAI21021.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
gi|111309398|gb|AAI21022.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
gi|119575830|gb|EAW55426.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_b
[Homo sapiens]
gi|158256902|dbj|BAF84424.1| unnamed protein product [Homo sapiens]
Length = 579
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 231/327 (70%), Gaps = 13/327 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVL 330
>gi|114605652|ref|XP_001171194.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 4 [Pan troglodytes]
Length = 536
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 231/327 (70%), Gaps = 13/327 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVL 330
>gi|402783747|dbj|BAM37953.1| CDK5 regulatory subunit-associated protein 1-like 1 [Felis catus]
Length = 576
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 163/274 (59%), Positives = 211/274 (77%), Gaps = 9/274 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKNNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPRGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLT 330
>gi|332228849|ref|XP_003263603.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Nomascus leucogenys]
Length = 536
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 231/327 (70%), Gaps = 13/327 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVL 330
>gi|410958374|ref|XP_003985794.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Felis catus]
Length = 576
Score = 347 bits (889), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 163/274 (59%), Positives = 211/274 (77%), Gaps = 9/274 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKNNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPRGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLT 330
>gi|395830637|ref|XP_003788426.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Otolemur garnettii]
Length = 583
Score = 346 bits (888), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 162/273 (59%), Positives = 211/273 (77%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYTITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRVGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVL 329
>gi|403270819|ref|XP_003927359.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Saimiri boliviensis boliviensis]
Length = 578
Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 175/327 (53%), Positives = 232/327 (70%), Gaps = 14/327 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED+++ + P R + V PK K + + S S IPG +
Sbjct: 10 LEDIEDIVSQED---SKPQDRHFVRR-DVVPKARKRNTQKYLQEEDSPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYLIDELVDRAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVL 329
>gi|380022483|ref|XP_003695074.1| PREDICTED: CDKAL1-like protein-like [Apis florea]
Length = 537
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 181/328 (55%), Positives = 231/328 (70%), Gaps = 16/328 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+ S P ++ V ++K + L + L+ IPGT+T
Sbjct: 9 IEDIEDLI--SSQDITPKERYSSRKSITV-----RSKRKQVIEELPQPPILNSIIPGTQT 61
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SDSEYMAGQL+A+GY LT+N +AD+WL+N+CTVKSP++ I
Sbjct: 62 IYVKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYKADLWLLNSCTVKSPAEDHFRNEIEA 121
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
K K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 122 GKKIGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFLQQKKEA 181
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 182 GKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVDRAKQA 241
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTG YGRDIG +LP LL ++ E+ P+G M RIGMTNPP+ILEHL+
Sbjct: 242 FEEGVCELWLTSEDTGTYGRDIGSSLPELLWKLI-EVIPNGCRM-RIGMTNPPYILEHLE 299
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
E++++LRHP VYSFLHVPVQSGSD VL+
Sbjct: 300 EMSKILRHPKVYSFLHVPVQSGSDQVLA 327
>gi|109069747|ref|XP_001098819.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
isoform 3 [Macaca mulatta]
Length = 576
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 162/273 (59%), Positives = 211/273 (77%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVL 330
>gi|355748266|gb|EHH52749.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
fascicularis]
Length = 576
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 162/273 (59%), Positives = 211/273 (77%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVL 330
>gi|380814044|gb|AFE78896.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
gi|383419475|gb|AFH32951.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
gi|384947864|gb|AFI37537.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
Length = 576
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 162/273 (59%), Positives = 211/273 (77%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVL 330
>gi|426250880|ref|XP_004019161.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 1 [Ovis aries]
gi|426250882|ref|XP_004019162.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 2 [Ovis aries]
gi|426250884|ref|XP_004019163.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 3 [Ovis aries]
Length = 578
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 172/327 (52%), Positives = 232/327 (70%), Gaps = 14/327 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + ++ S S IPG +
Sbjct: 10 LDDIEDIVSQEDSKPQDRHF----SRKHVVPKVRRRNTQKYLQEENRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SDAVL
Sbjct: 303 EMAKILHHPRVYAFLHIPVQSASDAVL 329
>gi|395511895|ref|XP_003760186.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Sarcophilus harrisii]
Length = 577
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 162/273 (59%), Positives = 210/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N EAD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENPSEADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEEDKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKSNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRVGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVL 329
>gi|7020375|dbj|BAA91102.1| unnamed protein product [Homo sapiens]
Length = 579
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 170/327 (51%), Positives = 231/327 (70%), Gaps = 13/327 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ I+ GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISISTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVL 330
>gi|432112178|gb|ELK35117.1| CDK5 regulatory subunit-associated protein 1-like 1 [Myotis
davidii]
Length = 572
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 211/273 (77%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + + K +V+AGCVPQ L+G+S++GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKRAQEENKKIVLAGCVPQAQPRQDYLQGLSVIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A+VL HP VY+FLH+PVQS SDAVL
Sbjct: 297 ILEHLEEMAKVLNHPRVYAFLHIPVQSASDAVL 329
>gi|350586429|ref|XP_003128247.3| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 [Sus
scrofa]
Length = 578
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 228/327 (69%), Gaps = 14/327 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED++ S P V + + L D + + S IPG +
Sbjct: 10 LDDIEDIV--SQEDSKPQDRHFARKQVVPKVRRRNTQKYLQDENSPPSDST---IPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD VL
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDTVL 329
>gi|431913258|gb|ELK14936.1| CDK5 regulatory subunit-associated protein 1-like 1 [Pteropus
alecto]
Length = 621
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 210/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+AFGY +T+N+ EAD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAFGYKITENASEADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+S++GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSVIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V ++ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-DVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD VL
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVL 329
>gi|26349829|dbj|BAC38554.1| unnamed protein product [Mus musculus]
gi|148700457|gb|EDL32404.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_d
[Mus musculus]
Length = 520
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 231/327 (70%), Gaps = 14/327 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRQF----SRKHVFPKVRRRNTQKYLQEEPRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVL 329
>gi|355561353|gb|EHH17985.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
Length = 576
Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 210/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+ +GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLATYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVL 330
>gi|74146734|dbj|BAE41351.1| unnamed protein product [Mus musculus]
Length = 351
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 231/327 (70%), Gaps = 14/327 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRQF----SRKHVFPKVRRRNTQKYLQEEPRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVL 329
>gi|334325985|ref|XP_001375874.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1
[Monodelphis domestica]
Length = 579
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 162/273 (59%), Positives = 210/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N EAD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENPSEADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEEDKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKSNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVL 329
>gi|21617853|ref|NP_653119.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Mus
musculus]
gi|81879575|sp|Q91WE6.1|CDKAL_MOUSE RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|16359212|gb|AAH16073.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56205715|emb|CAI24677.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56238093|emb|CAI25816.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56800055|emb|CAI35240.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56800204|emb|CAI35144.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|148700456|gb|EDL32403.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
[Mus musculus]
Length = 578
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 231/327 (70%), Gaps = 14/327 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRQF----SRKHVFPKVRRRNTQKYLQEEPRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVL 329
>gi|149731822|ref|XP_001494687.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
[Equus caballus]
Length = 578
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 210/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD VL
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVL 329
>gi|443735052|gb|ELU18907.1| hypothetical protein CAPTEDRAFT_20043 [Capitella teleta]
Length = 561
Score = 343 bits (880), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 174/328 (53%), Positives = 229/328 (69%), Gaps = 13/328 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNK-NKPRLHDNHLSKTGSLSPKIPGTE 59
++DIED+ + + G R + A + +K N P S+ IPGT+
Sbjct: 12 IDDIEDIFSKTSEGIPREKVRKHVVARARKQRASKRNAPEASQVQHPLADSV---IPGTQ 68
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY+KT+GC+HN SD EYMAGQL+A+GY +T++ + A +WL+N+CTVK+P++ I
Sbjct: 69 NIYVKTWGCAHNSSDGEYMAGQLAAYGYTITEDKDSAHLWLLNSCTVKNPAEDHFRNEIT 128
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K K +V++GCVPQG+ ++G+S++GV QIDRVVEVVEETLKG+ VRL +KK
Sbjct: 129 KAKEQGKYVVISGCVPQGAPRASYIQGLSVIGVHQIDRVVEVVEETLKGNAVRLFGQKKE 188
Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
AL LPK+RRN +EI+ IN GCL ACTYCKTKHARG LGSY +E +V R +
Sbjct: 189 AGKKLGGAALSLPKIRRNPLIEIIAINTGCLNACTYCKTKHARGELGSYPIEQIVNRAKQ 248
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+WL+SED GAYG DIGV LP LL +V E PDG+ M+R+GMTNPP+ILEHL
Sbjct: 249 SFEEGVVEIWLTSEDLGAYGIDIGVTLPQLLWQLV-ETIPDGA-MMRLGMTNPPYILEHL 306
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+E+A++L+HP VYSFLHVPVQSGSDAVL
Sbjct: 307 EEMAKILKHPRVYSFLHVPVQSGSDAVL 334
>gi|300794023|ref|NP_001179620.1| CDK5 regulatory subunit-associated protein 1-like 1 [Bos taurus]
gi|296474090|tpg|DAA16205.1| TPA: CDK5 regulatory subunit associated protein 1-like 1 [Bos
taurus]
Length = 578
Score = 343 bits (880), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 210/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD VL
Sbjct: 297 ILEHLEEMAKILHHPRVYAFLHIPVQSASDTVL 329
>gi|148700454|gb|EDL32401.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_a
[Mus musculus]
Length = 444
Score = 343 bits (879), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 231/327 (70%), Gaps = 14/327 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRQF----SRKHVFPKVRRRNTQKYLQEEPRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVL 329
>gi|354468803|ref|XP_003496840.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1,
partial [Cricetulus griseus]
Length = 432
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 160/273 (58%), Positives = 208/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIRKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +VA +P MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVAVIPE--GAMLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVL 329
>gi|270014918|gb|EFA11366.1| hypothetical protein TcasGA2_TC011523 [Tribolium castaneum]
Length = 545
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/274 (60%), Positives = 209/274 (76%), Gaps = 9/274 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ IY+KT+GC+HN SD+EYMAGQL+A+GY LT+N +EAD+WL+N+CTVK+P++
Sbjct: 64 IPGTQKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAEDHF 123
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K K +VVAGCVPQG+ ++G+SI+GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 124 RNQIQEAKELGKYIVVAGCVPQGAPKASFIQGLSIIGVQQIDRVVEVVEETLKGNTVKLL 183
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V
Sbjct: 184 GTKKEQGKKIGGASLLLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIV 243
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTG YGRDIG +LP LL +V E+ P+G LR+GMTNPP+
Sbjct: 244 ERAKQAFEEGVVEIWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPY 301
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
ILEHL E+A+++ HP VYSFLHVPVQSGSD VLS
Sbjct: 302 ILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLS 335
>gi|291190604|ref|NP_001167148.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
gi|223648364|gb|ACN10940.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
Length = 562
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 162/273 (59%), Positives = 205/273 (75%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+M+T+GCSHN SD EYMAGQL+A GY +T++ EAD+WL+N+CTVK+P++
Sbjct: 55 IPGMQKIWMRTWGCSHNNSDGEYMAGQLAASGYKMTEDPAEADLWLLNSCTVKNPAEDHF 114
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +VVAGCVPQ + L+G+SI+GVQQIDRVVEVV+E +KGH VRLL
Sbjct: 115 RNSIKKAQEQDKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLL 174
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV
Sbjct: 175 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPVEELV 234
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R +GV E+WL+SEDTGAYG+DIG +LP LL +V E+P MLR+GMTNPP+
Sbjct: 235 ERARQSFQEGVCEIWLTSEDTGAYGKDIGTDLPTLLWRLVEEIPE--GAMLRLGMTNPPY 292
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E++++L HP VY+FLHVPVQS SD+VL
Sbjct: 293 ILEHLEEMSKILNHPRVYAFLHVPVQSASDSVL 325
>gi|392333847|ref|XP_003753012.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Rattus norvegicus]
gi|149045301|gb|EDL98387.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
isoform CRA_d [Rattus norvegicus]
Length = 520
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 210/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVL 329
>gi|296197315|ref|XP_002806724.1| PREDICTED: LOW QUALITY PROTEIN: threonylcarbamoyladenosine tRNA
methylthiotransferase [Callithrix jacchus]
Length = 579
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 230/327 (70%), Gaps = 13/327 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LEDIEDIVSQED---SKPQERHFVRR-DVVPKARRRNTQKYLQEEEDSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+A CVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAVCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLHVPVQS SD+VL
Sbjct: 304 EMAKILNHPRVYAFLHVPVQSASDSVL 330
>gi|32480090|emb|CAE01708.1| OSJNBb0086G13.6 [Oryza sativa Japonica Group]
Length = 558
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 177/257 (68%), Positives = 202/257 (78%), Gaps = 28/257 (10%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV V PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT QSDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM
Sbjct: 54 IPGT-------------QSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 100
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 101 TTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL 160
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+
Sbjct: 161 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVV 220
Query: 235 ADGVKEVWLSSEDTGAY 251
++GV+E+WLSSEDTGAY
Sbjct: 221 SEGVREIWLSSEDTGAY 237
>gi|91094359|ref|XP_970283.1| PREDICTED: similar to GA19679-PA [Tribolium castaneum]
Length = 548
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/274 (60%), Positives = 209/274 (76%), Gaps = 9/274 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ IY+KT+GC+HN SD+EYMAGQL+A+GY LT+N +EAD+WL+N+CTVK+P++
Sbjct: 67 IPGTQKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAEDHF 126
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K K +VVAGCVPQG+ ++G+SI+GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 127 RNQIQEAKELGKYIVVAGCVPQGAPKASFIQGLSIIGVQQIDRVVEVVEETLKGNTVKLL 186
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V
Sbjct: 187 GTKKEQGKKIGGASLLLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIV 246
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTG YGRDIG +LP LL +V E+ P+G LR+GMTNPP+
Sbjct: 247 ERAKQAFEEGVVEIWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPY 304
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
ILEHL E+A+++ HP VYSFLHVPVQSGSD VLS
Sbjct: 305 ILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLS 338
>gi|157129375|ref|XP_001661661.1| radical sam proteins [Aedes aegypti]
gi|108872257|gb|EAT36482.1| AAEL011435-PA [Aedes aegypti]
Length = 558
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/287 (58%), Positives = 210/287 (73%), Gaps = 9/287 (3%)
Query: 42 DNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
D + + L IPGT++IY+KT+GC+HN SDSEYMAGQL+++GY +T + +AD+WL+
Sbjct: 49 DAAVPEKSVLESVIPGTQSIYLKTWGCAHNNSDSEYMAGQLASYGYNITSDKSDADLWLL 108
Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEV 161
N+CTVK+PS+ I K +V+AGCVPQ + + G+SIVGV QIDRV EV
Sbjct: 109 NSCTVKNPSEDTFRNEIQAANKMGKHVVLAGCVPQAAPKSDYMHGLSIVGVHQIDRVTEV 168
Query: 162 VEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 214
VEETLKGH VRLL KKL P L LPKVR+N +EI+PIN GCL ACTYCKTK A
Sbjct: 169 VEETLKGHSVRLLQAKKLNGKRVAGPQLALPKVRKNPLIEIIPINSGCLNACTYCKTKFA 228
Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274
R L SY VE +V R V +GV E+WL+SEDTG YGRDIG +LP LL +VA + PDG
Sbjct: 229 RADLVSYPVEEIVQRAAHVFTEGVCEIWLTSEDTGTYGRDIGTSLPELLWQLVAVI-PDG 287
Query: 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
MLR+GMTNPP+ILEHL+E+A++L HP VYSFLHVP+QSGSD+VLS
Sbjct: 288 C-MLRLGMTNPPYILEHLEEMAKILVHPKVYSFLHVPIQSGSDSVLS 333
>gi|149045300|gb|EDL98386.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
isoform CRA_c [Rattus norvegicus]
Length = 578
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 210/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVL 329
>gi|301779277|ref|XP_002925056.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
1-like, partial [Ailuropoda melanoleuca]
Length = 429
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 209/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKNNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
I EHL+E+A++L HP VY+FLH+PVQS SD VL
Sbjct: 297 ISEHLEEMAKILNHPRVYAFLHIPVQSASDTVL 329
>gi|92096943|gb|AAI14872.1| CDKAL1 protein [Bos taurus]
Length = 416
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 210/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD VL
Sbjct: 297 ILEHLEEMAKILHHPRVYAFLHIPVQSASDTVL 329
>gi|291395737|ref|XP_002714277.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
[Oryctolagus cuniculus]
Length = 571
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/278 (57%), Positives = 213/278 (76%), Gaps = 9/278 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+S++GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSVIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKENGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V ++ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-DVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL ++
Sbjct: 297 ILEHLQEMAKILNHPRVYAFLHIPVQSASDSVLMAMKR 334
>gi|349604029|gb|AEP99693.1| CDK5 regulatory subunit-associated protein 1-like 1-like protein
[Equus caballus]
Length = 578
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 210/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKTQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGAPLDLPKIRKNPRIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFREGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD VL
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVL 329
>gi|149045299|gb|EDL98385.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 442
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 210/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVL 329
>gi|195456808|ref|XP_002075296.1| GK17257 [Drosophila willistoni]
gi|194171381|gb|EDW86282.1| GK17257 [Drosophila willistoni]
Length = 570
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 167/273 (61%), Positives = 204/273 (74%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +Y+KT+GC+HN SDSEYMAGQL+++GY L +EAD+WL+N+CTVK+PS+
Sbjct: 71 IPGTQKVYIKTWGCAHNNSDSEYMAGQLASYGYQLCSGKDEADLWLLNSCTVKNPSEDTF 130
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG + L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 131 RNEIESGMQNGKHVVVAGCVPQGGPKSEYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 190
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ +L LPKVR+N VEI+ IN GCL CTYCKTKHARG L SY E +V
Sbjct: 191 QNKKVNGRRVAGASLALPKVRKNPLVEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 250
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 251 ERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPY 308
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A+VL+HP VYSFLHVPVQSGSD+VL
Sbjct: 309 ILEHLEEVAKVLQHPRVYSFLHVPVQSGSDSVL 341
>gi|198423331|ref|XP_002121617.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
1-like 1 [Ciona intestinalis]
Length = 516
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 162/279 (58%), Positives = 213/279 (76%), Gaps = 10/279 (3%)
Query: 50 SLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNSEEADIWLINTCTVKS 108
++ IP T+TI++KT+GC+HN SDSEYMAGQL+++GY +T+N + AD+WL+N+CTVK+
Sbjct: 55 TIQSNIPATQTIFVKTWGCTHNSSDSEYMAGQLASYGYNVVTENGDNADLWLLNSCTVKN 114
Query: 109 PSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG 168
P++ +I+K +S K +V+AGCV QG+ ++G+SI+GVQQIDRVVEVVEETLKG
Sbjct: 115 PAEDHFRNMISKAQSLNKQVVLAGCVSQGAPKQSYIQGLSIIGVQQIDRVVEVVEETLKG 174
Query: 169 HEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ VRLL +KK +LDLPK+RRN F+EI+ IN GCL +CTYCKTKHARG+LGSY
Sbjct: 175 NTVRLLKQKKENGRKIGGASLDLPKIRRNPFIEIISINTGCLNSCTYCKTKHARGNLGSY 234
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
V +V R +GV E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+G
Sbjct: 235 PVAEIVQRAIQSFGEGVVEIWLTSEDTGAYGRDIGTSLPELLWELVKVIPV--GCMLRVG 292
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
MTNPP+IL+HL+E+ ++L HP VYSFLHVPVQSGSD L
Sbjct: 293 MTNPPYILDHLEEMGKILNHPNVYSFLHVPVQSGSDQTL 331
>gi|344289532|ref|XP_003416496.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1
[Loxodonta africana]
Length = 578
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 160/273 (58%), Positives = 209/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+ + +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITEKASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD VL
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVL 329
>gi|425893217|gb|AFY09824.1| CDK5 regulatory subunit associated protein 1-like 1 [Rattus
norvegicus]
Length = 578
Score = 340 bits (872), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 160/273 (58%), Positives = 209/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +V+AGCVPQ L+G+SI+G QQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGAQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVL 329
>gi|307207026|gb|EFN84849.1| CDKAL1-like protein [Harpegnathos saltator]
Length = 542
Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 208/279 (74%), Gaps = 10/279 (3%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
LS IPGT+T+Y+KT+GC+HN SD+EYMAGQL+A GY L D+ +AD+WL+N+CTVK+P+
Sbjct: 46 LSSIIPGTQTVYVKTWGCTHNSSDAEYMAGQLAAQGYNLIDDKLKADLWLLNSCTVKNPA 105
Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
+ I + A K +VVAGCVPQG+ L+G+SI+GVQQIDRVVEVVEETLKGH
Sbjct: 106 EDQFRNEIENGRKAGKHIVVAGCVPQGAPKSPFLKGLSIIGVQQIDRVVEVVEETLKGHT 165
Query: 171 VRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
VR L KK L+LPK+R+N +EI+ I+ GCL CTYCKTKHARG LGSY
Sbjct: 166 VRFLRTKKNSTGRKIGGSTLNLPKIRKNPRIEIIAISTGCLNQCTYCKTKHARGQLGSYP 225
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
+ +V R +GV E+W++SEDTGAYGRDIG NLP LL +V +P S M+RIGM
Sbjct: 226 PDEIVARALQAFEEGVCELWITSEDTGAYGRDIGTNLPELLWKLVDVIP--ESCMMRIGM 283
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
TNPP+ILEHL EIA++LRHP VYSFLH+PVQSGSD VL+
Sbjct: 284 TNPPYILEHLDEIAKILRHPKVYSFLHIPVQSGSDQVLA 322
>gi|118373032|ref|XP_001019710.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Tetrahymena thermophila]
gi|89301477|gb|EAR99465.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Tetrahymena thermophila SB210]
Length = 574
Score = 339 bits (870), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 168/331 (50%), Positives = 227/331 (68%), Gaps = 25/331 (7%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGV----------NPKYNKNKPRLHDNHLSKTGS 50
+ DIED++AG R+ + PK + + D+ +
Sbjct: 6 LADIEDVIAGDVADDFIQKDRVKDRNIKKRPKKVKKVEEEPKQEELQEPEDDDEIKFDMP 65
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
++ ++PGT+ +Y+KTFGCSHN SDSE+M GQL+ +GY L + ++A + L+N+CTVK+PS
Sbjct: 66 VNNQVPGTQNVYVKTFGCSHNISDSEFMMGQLAEYGYNLCSDPKDAHLILVNSCTVKNPS 125
Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
Q A T++ K KKP+VVAGCVPQG R++ LE VS++G+ QIDRVVEVVEETLKG++
Sbjct: 126 QDAFMTIVKTYKHKKKPIVVAGCVPQGDRNIPGLEDVSVIGISQIDRVVEVVEETLKGNK 185
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
VRL +K LP+LDLPK+R CLG+CTYCKTKHARG LGSY E++V RV
Sbjct: 186 VRLYGKKTLPSLDLPKIR-------------CLGSCTYCKTKHARGKLGSYQPEAIVNRV 232
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+TV +GVKE+WL+SEDTGAYGRDIG ++ LL IV LP D MLR+GMTNPP+ILE
Sbjct: 233 KTVCEEGVKEIWLTSEDTGAYGRDIGTDISQLLRLIVEVLPND--VMLRVGMTNPPYILE 290
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
HL+ ++ +LRHP V+SFLH+PVQ+ ++ VL
Sbjct: 291 HLQNMSTILRHPRVFSFLHIPVQAANNTVLE 321
>gi|158292783|ref|XP_314113.4| AGAP005211-PA [Anopheles gambiae str. PEST]
gi|157017155|gb|EAA09381.5| AGAP005211-PA [Anopheles gambiae str. PEST]
Length = 553
Score = 339 bits (870), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 179/328 (54%), Positives = 226/328 (68%), Gaps = 16/328 (4%)
Query: 3 DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNK---NKPRLHDNHLSKTGSLSPKIPGTE 59
DIEDL+ S +P L V V K K N+P+ + + L IP T+
Sbjct: 11 DIEDLI--SLDDPSPAERYLNKKDVTVRTKRVKVRANRPK--ETSTVEKPLLDSVIPETQ 66
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IYMKT+GC+HN SD+EYMAGQL+ +GY LT + + AD+W++N+CTVK+PS+ I
Sbjct: 67 HIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKDSADLWVLNSCTVKNPSEDTFRNEIE 126
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
A K +VVAGCVPQ + L+G+S+VGVQQIDRV EVVEETLKGH VRLL KK+
Sbjct: 127 AAHQAGKHVVVAGCVPQAAPRSDYLKGLSVVGVQQIDRVAEVVEETLKGHSVRLLQAKKV 186
Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
P L LPKVR+N +E++PIN GCL ACTYCKTK AR L SY V+ +V R +
Sbjct: 187 DGRKVAGPKLALPKVRKNPLIEVIPINSGCLNACTYCKTKFARADLVSYPVQEIVDRAQQ 246
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
V DGV E+WL+SEDTG YGRDIG +LP LL +V E+ P+G M+R+GMTNPP+ILEHL
Sbjct: 247 VFQDGVCEIWLTSEDTGTYGRDIGSSLPELLWQLV-EVIPEGC-MMRLGMTNPPYILEHL 304
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VYSFLH+PVQSGSDA+L
Sbjct: 305 DEMAKILSHPRVYSFLHIPVQSGSDAIL 332
>gi|340371624|ref|XP_003384345.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Amphimedon queenslandica]
Length = 550
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 165/273 (60%), Positives = 208/273 (76%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG+++IY+KT+GCSHN SD EYMAG L+A GY +TD+ +A +WL+N+CTVK PS+
Sbjct: 63 IPGSQSIYIKTWGCSHNTSDGEYMAGLLAAEGYTITDSPLDAHVWLLNSCTVKGPSEDGF 122
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ I K K K LVVAGCVPQG +DL E++ +S VGV+QIDR+VEVVE LKG VRL
Sbjct: 123 KSAIKKGKELNKTLVVAGCVPQGQKDLDEIKDISAVGVKQIDRIVEVVEGALKGGTVRLF 182
Query: 175 HRKK-------LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
K+ P+L+LPK+R+N VEI+PIN GCL CTYCKTKH+RG+L SY + ++
Sbjct: 183 GTKRGSGRQLAGPSLELPKIRKNPLVEIIPINSGCLNHCTYCKTKHSRGNLASYYPQEII 242
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R +GV E+WL+SEDTGAYGRDIGV LP LL +V E+ P+GS MLRIGMTNPP+
Sbjct: 243 SRATQAFEEGVVEIWLTSEDTGAYGRDIGVTLPELLWQLV-EVMPEGS-MLRIGMTNPPY 300
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
I+EHL+E+A++L HP VYSFLHVPVQSGSDAVL
Sbjct: 301 IMEHLEEMAKILSHPRVYSFLHVPVQSGSDAVL 333
>gi|41055309|ref|NP_956921.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Danio rerio]
gi|82187245|sp|Q6PG34.1|CDKAL_DANRE RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|34784048|gb|AAH57248.1| CDK5 regulatory subunit associated protein 1-like 1 [Danio rerio]
Length = 547
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 161/291 (55%), Positives = 209/291 (71%), Gaps = 9/291 (3%)
Query: 37 KPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEA 96
+ R H + IPG + +++KT+GCSHN SD EYMAGQL+ GY +T++S +A
Sbjct: 37 RARKHKQETGEQMQTDSVIPGMQKVWLKTWGCSHNSSDGEYMAGQLAVAGYQITEDSSDA 96
Query: 97 DIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQID 156
D+WL+N+CTVKSP++ I K + K +V+AGCVPQ + ++ +SI+GVQQID
Sbjct: 97 DLWLLNSCTVKSPAEDHFRNAIRKAQEQNKKVVLAGCVPQAQPRMDYIKDLSIIGVQQID 156
Query: 157 RVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYC 209
RVVEVV+E +KGH VRLL +KK LDLPK+R+N +EI+ IN GCL ACTYC
Sbjct: 157 RVVEVVDEAIKGHSVRLLGQKKEKGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYC 216
Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269
KTKHARG L SY VE LV RVR +GV E+WL+SEDTGAYGRDIG +LP LL +V E
Sbjct: 217 KTKHARGDLASYPVEELVERVRQSFQEGVCEIWLTSEDTGAYGRDIGSDLPTLLWRLVEE 276
Query: 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+P MLR+GMTNPP+ILEHL+E++ +L+HP V+SFLHVP+QS SD+VL
Sbjct: 277 IPE--GAMLRLGMTNPPYILEHLEEMSRILQHPRVFSFLHVPLQSASDSVL 325
>gi|125807910|ref|XP_001360562.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
gi|121988829|sp|Q291H5.1|CDKAL_DROPS RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDKAL1-like
protein; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|54635734|gb|EAL25137.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
Length = 553
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 166/273 (60%), Positives = 205/273 (75%), Gaps = 10/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ +EAD+WL+N+CTVK+PS+
Sbjct: 68 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKDEADLWLLNSCTVKNPSEDTF 126
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 127 RNEIESGMSNGKHIVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 186
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V
Sbjct: 187 QNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 246
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 247 DRARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPPY 304
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL
Sbjct: 305 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVL 337
>gi|300192927|ref|NP_001177888.1| CDKAL1-like protein [Nasonia vitripennis]
Length = 541
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 205/273 (75%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KT+GC+HN SDSEYMAGQLS +GY LT++ AD+W++N+CTVK+P++
Sbjct: 57 IPGTQTIYIKTWGCTHNSSDSEYMAGQLSMYGYNLTEDKSIADLWILNSCTVKNPAEDHF 116
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K +VV+GCVPQG+ ++G+SI+GVQQIDRVVEVVEETLKG+ V+ L
Sbjct: 117 KNEINLARKLGKHIVVSGCVPQGAPKSNFIQGLSIIGVQQIDRVVEVVEETLKGNTVKFL 176
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++KK L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E ++
Sbjct: 177 NKKKEAGKKIGGAPLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYRPEEII 236
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R DG+KE+WL+SEDTGAYG+DI NLP LL ++ ++ PD M RIGMTNPP+
Sbjct: 237 DRAIQAFKDGIKELWLTSEDTGAYGKDIDTNLPELLWKLI-DVIPDKCRM-RIGMTNPPY 294
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+EI ++L+HP VYSFLH+PVQSGSD VL
Sbjct: 295 ILEHLEEIGKILKHPKVYSFLHIPVQSGSDRVL 327
>gi|195150351|ref|XP_002016118.1| GL10666 [Drosophila persimilis]
gi|194109965|gb|EDW32008.1| GL10666 [Drosophila persimilis]
Length = 553
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 166/273 (60%), Positives = 205/273 (75%), Gaps = 10/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ +EAD+WL+N+CTVK+PS+
Sbjct: 68 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKDEADLWLLNSCTVKNPSEDTF 126
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 127 RNEIESGMSNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 186
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V
Sbjct: 187 QNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 246
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 247 DRARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPPY 304
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL
Sbjct: 305 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVL 337
>gi|428184659|gb|EKX53514.1| hypothetical protein GUITHDRAFT_64346 [Guillardia theta CCMP2712]
Length = 563
Score = 337 bits (863), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 166/267 (62%), Positives = 208/267 (77%), Gaps = 3/267 (1%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-SEEADIWLINTCTVKSPSQSA 113
IPG + I++KT GC+HN SD EYMAG L+++GY +T+ SE+ D +L N+CTVK PSQ +
Sbjct: 2 IPGMQRIFLKTQGCAHNVSDGEYMAGLLASYGYEITETWSEDVDCFLFNSCTVKGPSQDS 61
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
++AK KS+ +VVAGCVPQG E + VSI+G QQI RVVEVVEE +KG+ V+L
Sbjct: 62 FLNMVAKAKSSGASVVVAGCVPQGEPGRGEFDDVSIIGTQQIHRVVEVVEEAIKGNTVKL 121
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L +++ PAL+LPK+RRN VEI+PI++GCL CTYCKTKHARG L SYT +S+V RVRTV
Sbjct: 122 LGQRERPALELPKIRRNALVEIVPISMGCLNHCTYCKTKHARGDLVSYTPDSIVSRVRTV 181
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I++GV+EVWLSSEDTGAYG+DI V+LP LL AIV L PDG MLR+GMTNPP ILEH +
Sbjct: 182 ISEGVREVWLSSEDTGAYGKDINVSLPYLLGAIVDAL-PDG-VMLRVGMTNPPHILEHKE 239
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+A VL HP V+ FLH+PVQ GSD VL
Sbjct: 240 AVARVLNHPRVFKFLHIPVQCGSDKVL 266
>gi|339252460|ref|XP_003371453.1| putative radical SAM domain protein [Trichinella spiralis]
gi|316968295|gb|EFV52591.1| putative radical SAM domain protein [Trichinella spiralis]
Length = 542
Score = 337 bits (863), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 162/274 (59%), Positives = 209/274 (76%), Gaps = 10/274 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG ++Y+KT+GC+HN SDSEYMAG +S+ GY + D+ ADIWL+N+CTVK+PS+ +
Sbjct: 48 IPGAFSVYVKTWGCTHNSSDSEYMAGLMSSAGYGIVDDPSVADIWLLNSCTVKTPSEQHV 107
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ K ++ KP++V+GCVPQ + L+GVS+VG+QQIDR+VEVVEETLKG+ V+LL
Sbjct: 108 QNELEKARALNKPVIVSGCVPQAEPSIPWLQGVSLVGIQQIDRIVEVVEETLKGNTVQLL 167
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ KK+ LDLPKVRRN VEI+ IN GCL CTYCKTK ARG+L SY++E ++
Sbjct: 168 NYKKVKGKRTAGARLDLPKVRRNPLVEIIAINTGCLNNCTYCKTKKARGNLASYSIEEII 227
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + I++GVKE+WL+SED GAYGRDI LP LL A+ A+L PDG MLR+GMTNPPF
Sbjct: 228 DRAESCISEGVKEIWLTSEDLGAYGRDIDCTLPELLKALTAKL-PDG-VMLRLGMTNPPF 285
Query: 288 -ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
I ++EI E+L HPCVYSFLH+PVQSGSDAVL
Sbjct: 286 HIPISVQEIGEILNHPCVYSFLHIPVQSGSDAVL 319
>gi|291238003|ref|XP_002738926.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Saccoglossus kowalevskii]
Length = 544
Score = 336 bits (862), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 162/273 (59%), Positives = 207/273 (75%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG +++Y+KT+GCSHN SDSEYMAGQL+++GY +T+ E AD+WL+N+CTVK+P++
Sbjct: 46 IPGCQSVYVKTWGCSHNNSDSEYMAGQLASYGYKITETEEAADLWLLNSCTVKTPAEQHF 105
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L + GVS+VGVQQIDR+VEVVEET KGH VRL
Sbjct: 106 QNSIIKAREQNKYMVLAGCVPQAQPKLDYINGVSVVGVQQIDRIVEVVEETFKGHTVRLF 165
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK L+LPK+R+N +EI+ IN GCL ACTYCKTK+ARG LGSY LV
Sbjct: 166 GQKKKDGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNACTYCKTKYARGELGSYQPSELV 225
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYG+DIGV + LL +V E+ PDG M+RIGMTNPP+
Sbjct: 226 ARAKQSFEEGVCELWLTSEDTGAYGKDIGVTIVELLWQLV-EVIPDGC-MMRIGMTNPPY 283
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+EI+++L+HP VYSFLHVPVQSGSD+VL
Sbjct: 284 ILEHLEEISKILKHPRVYSFLHVPVQSGSDSVL 316
>gi|242021866|ref|XP_002431364.1| radical sam protein, putative [Pediculus humanus corporis]
gi|212516632|gb|EEB18626.1| radical sam protein, putative [Pediculus humanus corporis]
Length = 442
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 173/328 (52%), Positives = 226/328 (68%), Gaps = 20/328 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIEDL+ P ++ + V K +P ++DN IP +
Sbjct: 8 VDDIEDLIVSRDSAPKPNRTKITYRSKKVK-KDEYVQPVIYDN----------PIPESHK 56
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SDSEYMAG LS++GY L ++ E AD+WL+N+CTVK+P++S I K
Sbjct: 57 IYIKTWGCTHNSSDSEYMAGLLSSYGYNLVEDPEIADLWLLNSCTVKNPAESHFRNEIEK 116
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ K +V AGCVPQG+ ++ +SI+G+ IDRVVEVVEETLKGH VRLL +KK
Sbjct: 117 GRKLGKHIVAAGCVPQGAPKQNYIQNLSIIGIHNIDRVVEVVEETLKGHSVRLLSQKKEN 176
Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L LPKVR+N ++EI+PI+ GCL CTYCKTKHARG LGSY VE +V R +
Sbjct: 177 GKKLGGANLLLPKVRKNPYIEIIPISTGCLNQCTYCKTKHARGELGSYPVEEIVERAKQA 236
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
++GV E+WL+SEDTGAYG+DIG +LP LL +V E+ PD M R+GMTNPP+ILEHL+
Sbjct: 237 FSEGVVELWLTSEDTGAYGKDIGASLPELLWKVV-EVIPDNCRM-RVGMTNPPYILEHLE 294
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
E+A++L H VYSFLHVPVQSGSDAVLS
Sbjct: 295 EMAKILNHEKVYSFLHVPVQSGSDAVLS 322
>gi|195335207|ref|XP_002034266.1| GM19985 [Drosophila sechellia]
gi|194126236|gb|EDW48279.1| GM19985 [Drosophila sechellia]
Length = 556
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 169/295 (57%), Positives = 213/295 (72%), Gaps = 21/295 (7%)
Query: 34 NKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
+K KP++H++ IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+
Sbjct: 56 DKPKPKIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GK 104
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
EEAD+WL+N+CTVK+PS+ I K +VVAGCVPQG+ L G+S++GVQ
Sbjct: 105 EEADLWLLNSCTVKNPSEDTFRNEIKSGMQNGKYIVVAGCVPQGAPKSDYLNGLSVIGVQ 164
Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGA 205
QIDRVVEVVEETLKGH V+LL KK L LPKVR+N +EI+ IN GCL
Sbjct: 165 QIDRVVEVVEETLKGHSVQLLQNKKKVLGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQ 224
Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265
CTYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWK 284
Query: 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+V +P + MLR+GMTNPP+ILEHL+E+A+V++HP VYSFLHVPVQSGSD+VL
Sbjct: 285 LVEVIPEN--CMLRVGMTNPPYILEHLEEVAKVMQHPRVYSFLHVPVQSGSDSVL 337
>gi|350422581|ref|XP_003493215.1| PREDICTED: CDKAL1-like protein-like [Bombus impatiens]
Length = 540
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 163/274 (59%), Positives = 208/274 (75%), Gaps = 9/274 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT+TIY KT+GC+HN SDSEYMAGQL+A+GY LT+N EAD+WL+N+CTVKSP++
Sbjct: 56 VPGTQTIYTKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYEADLWLLNSCTVKSPAEDHF 115
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGRKMGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK +L LPK+RRN +EI+ IN GCL CTYCKTKHARG LGSY + +V
Sbjct: 176 QQKKEAGKKIGGASLRLPKIRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIV 235
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R +GV E+WL+SEDTG YGRDIG +LP LL A+V ++ PDG +R+GMTNPP+
Sbjct: 236 ERAIQAFDEGVCELWLTSEDTGTYGRDIGTSLPELLWALV-KVVPDGCR-VRVGMTNPPY 293
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
ILE+L+E++++L HP VYSFLH+PVQSGSD VL+
Sbjct: 294 ILEYLEEMSKILSHPKVYSFLHIPVQSGSDQVLA 327
>gi|195584188|ref|XP_002081896.1| GD25482 [Drosophila simulans]
gi|194193905|gb|EDX07481.1| GD25482 [Drosophila simulans]
Length = 556
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 169/295 (57%), Positives = 213/295 (72%), Gaps = 21/295 (7%)
Query: 34 NKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
+K KP++H++ IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+
Sbjct: 56 DKPKPKIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GK 104
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
EEAD+WL+N+CTVK+PS+ I K +VVAGCVPQG+ L G+S++GVQ
Sbjct: 105 EEADLWLLNSCTVKNPSEDTFRNEIKSGMQNGKYVVVAGCVPQGAPKSDYLNGLSVIGVQ 164
Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGA 205
QIDRVVEVVEETLKGH V+LL KK L LPKVR+N +EI+ IN GCL
Sbjct: 165 QIDRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQ 224
Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265
CTYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWK 284
Query: 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+V +P + MLR+GMTNPP+ILEHL+E+A+V++HP VYSFLHVPVQSGSD+VL
Sbjct: 285 LVEVIPEN--CMLRVGMTNPPYILEHLEEVAKVMQHPRVYSFLHVPVQSGSDSVL 337
>gi|195382799|ref|XP_002050116.1| GJ21959 [Drosophila virilis]
gi|194144913|gb|EDW61309.1| GJ21959 [Drosophila virilis]
Length = 553
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 164/273 (60%), Positives = 204/273 (74%), Gaps = 10/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT+ +Y+KT+GC+HN SDSEYMAGQL+A+GY L+ +EAD+WL+N+CTVK+PS+
Sbjct: 70 VPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYNLS-GKDEADLWLLNSCTVKNPSEDTF 128
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 129 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 188
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ AL LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY + +V
Sbjct: 189 QNKKVHGRRVAGAALSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPDEIV 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R +G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 249 ERARQSFDEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPY 306
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL
Sbjct: 307 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVL 339
>gi|195027257|ref|XP_001986500.1| GH20489 [Drosophila grimshawi]
gi|193902500|gb|EDW01367.1| GH20489 [Drosophila grimshawi]
Length = 554
Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 179/334 (53%), Positives = 224/334 (67%), Gaps = 21/334 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKN---KPRLHDNHLSKTGSL----SP 53
++DIEDL++ P R N V + K KP L D+ +T
Sbjct: 12 IDDIEDLISADD---IKPRDRYE-NKKNVTVRAKKRAPIKPTLSDDEKEETKPQKIIHES 67
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
IPGT+ +Y+KT+GC+HN SDSEYMAGQL++FGY L+ +E AD+WL+N+CTVK+PS+
Sbjct: 68 VIPGTQKVYVKTWGCAHNNSDSEYMAGQLASFGYKLSGKNE-ADLWLLNSCTVKNPSEDT 126
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
I K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRL
Sbjct: 127 FRNEIEAGMRNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRL 186
Query: 174 LHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
L KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY +
Sbjct: 187 LQNKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPAEI 246
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V R R +G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP
Sbjct: 247 VDRARQSFDEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 304
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL
Sbjct: 305 YILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVL 338
>gi|195123861|ref|XP_002006420.1| GI21033 [Drosophila mojavensis]
gi|193911488|gb|EDW10355.1| GI21033 [Drosophila mojavensis]
Length = 554
Score = 333 bits (853), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 165/273 (60%), Positives = 203/273 (74%), Gaps = 10/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +Y+KT+GC+HN SDSEYMAGQL+A+GY L+ + +EAD+WL+N+CTVK+PS+
Sbjct: 70 IPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYNLS-SKDEADLWLLNSCTVKNPSEDTF 128
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG+ L G+SI+GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 129 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLRGLSIIGVQQIDRVVEVVEETLKGHSVRLL 188
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY +V
Sbjct: 189 QNKKVQGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPAEIV 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R +G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 249 ERARQSFDEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPY 306
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL
Sbjct: 307 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVL 339
>gi|429329558|gb|AFZ81317.1| RNA modification enzyme, MiaB family domain-containing protein
[Babesia equi]
Length = 643
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 152/284 (53%), Positives = 215/284 (75%), Gaps = 4/284 (1%)
Query: 44 HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT 103
H +T + +P IPG++T+Y + FGC+HN SDSEYM G LS +GY +TD+ +A + +IN+
Sbjct: 205 HEKETCNHTPLIPGSQTVYFRGFGCAHNSSDSEYMMGILSEYGYNITDDMSKAQVAVINS 264
Query: 104 CTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELE--GVSIVGVQQIDRVVEV 161
CTVK PSQ AM T I K K K P+VV GCVPQ ++L L+ VS++G QIDR+VEV
Sbjct: 265 CTVKGPSQDAMATEIRKAKDLKIPIVVGGCVPQADKNLTPLKDPSVSLLGTSQIDRIVEV 324
Query: 162 VEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
VE L+G ++ LL RK LP+L+LPK+R+N+ +EI+P++ GCLG+CT+CKTK ARG LGSY
Sbjct: 325 VEHALQGRKLVLLERKTLPSLELPKIRQNELIEIIPLSTGCLGSCTFCKTKQARGVLGSY 384
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
T+ES++ RV + ++ V ++WL+SEDTGAYG DIG+++ +LL +I+ LPPD MLR+G
Sbjct: 385 TLESILDRVESAVSQKVSQIWLTSEDTGAYGIDIGIDIVVLLKSILPLLPPD--VMLRLG 442
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
M+NPP+I H++EIA++L+H V+ F+H+PVQSGSD VL +
Sbjct: 443 MSNPPYIKRHIEEIAKILKHKNVFEFIHIPVQSGSDRVLDAMNR 486
>gi|19922432|ref|NP_611207.1| CG6550 [Drosophila melanogaster]
gi|122087244|sp|Q7K4W1.1|CDKAL_DROME RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDKAL1-like
protein; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|7302795|gb|AAF57870.1| CG6550 [Drosophila melanogaster]
gi|15291579|gb|AAK93058.1| GH28477p [Drosophila melanogaster]
gi|220945770|gb|ACL85428.1| CG6550-PA [synthetic construct]
Length = 552
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 166/274 (60%), Positives = 202/274 (73%), Gaps = 11/274 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ EEAD+WL+N+CTVK+PS+
Sbjct: 67 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GKEEADLWLLNSCTVKNPSEDTF 125
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH V+LL
Sbjct: 126 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVQLL 185
Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
KK L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +
Sbjct: 186 QNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 245
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP
Sbjct: 246 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 303
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ILEHL+E+A VL+HP VYSFLHVPVQSGSD+VL
Sbjct: 304 YILEHLEEVANVLQHPRVYSFLHVPVQSGSDSVL 337
>gi|194755317|ref|XP_001959938.1| GF11786 [Drosophila ananassae]
gi|190621236|gb|EDV36760.1| GF11786 [Drosophila ananassae]
Length = 557
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 165/274 (60%), Positives = 203/274 (74%), Gaps = 11/274 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ E+AD+WL+N+CTVK+PS+
Sbjct: 69 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKEDADLWLLNSCTVKNPSEDTF 127
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 128 RNEIESGMKNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVRLL 187
Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
KK L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +
Sbjct: 188 QNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 247
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP
Sbjct: 248 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPP 305
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL
Sbjct: 306 YILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVL 339
>gi|427785609|gb|JAA58256.1| Putative cdk5 regulatory subunit associated protein 1-like 1
[Rhipicephalus pulchellus]
Length = 554
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 163/274 (59%), Positives = 202/274 (73%), Gaps = 9/274 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT I++KT+GC+HN SDSEYMAGQL+A GY + D++ AD+WL+N+CTVK+P++
Sbjct: 51 LPGTHKIHVKTWGCAHNSSDSEYMAGQLAAKGYTIVDDARSADLWLLNSCTVKNPAEDHF 110
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCV Q + ++ L G+SIVGVQQ DRVVEVVEETLKG+ VRLL
Sbjct: 111 RGAIEAALHQGKKVVVAGCVSQATPNVGYLRGLSIVGVQQTDRVVEVVEETLKGNSVRLL 170
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK L LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY ++ LV
Sbjct: 171 GSKKEGRRKAGGAPLTLPKIRRNPLVEIIAINTGCLNRCTYCKTKHARGDLGSYPIDELV 230
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV+E+WL+SEDTGAYGRDIGV LP LL IV +P MLR+GMTNPP+
Sbjct: 231 ARAKQAFEEGVREIWLTSEDTGAYGRDIGVTLPDLLREIVQVIPE--GCMLRLGMTNPPY 288
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
IL+HL+++AE+L HP VYSFLHVPVQSGSD VL+
Sbjct: 289 ILDHLEDMAEILNHPRVYSFLHVPVQSGSDPVLT 322
>gi|241558622|ref|XP_002400268.1| conserved hypothetical protein [Ixodes scapularis]
gi|215499750|gb|EEC09244.1| conserved hypothetical protein [Ixodes scapularis]
Length = 460
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 160/274 (58%), Positives = 206/274 (75%), Gaps = 9/274 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT IY+KT+GC+HN SDSEYMAGQL+A GY++ +++ AD+WL+N+CTVK+P++
Sbjct: 52 LPGTHKIYVKTWGCAHNSSDSEYMAGQLAAKGYSIVEDASSADLWLLNSCTVKNPAEDHF 111
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +V AGCV Q + +++ L+G+S+VGVQQ DR+VEVVEETLKG+ VRLL
Sbjct: 112 RGAIDSGLRQGKKVVAAGCVSQATPNVEYLKGLSVVGVQQTDRIVEVVEETLKGNSVRLL 171
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK AL LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY++E LV
Sbjct: 172 GSKKDGRRKAGGAALTLPKIRRNPLVEIIAINTGCLNHCTYCKTKHARGDLGSYSIEELV 231
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV+E+WL+SEDTGAYGRDIG LP LL +VA +P MLR+GMTNPP+
Sbjct: 232 ARAKQAFQEGVREIWLTSEDTGAYGRDIGETLPDLLREMVAVVPE--GCMLRLGMTNPPY 289
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
IL++L+++AE+L HP VYSFLHVPVQSGSD VL+
Sbjct: 290 ILDYLEDMAEILSHPRVYSFLHVPVQSGSDPVLA 323
>gi|427797963|gb|JAA64433.1| Putative cdk5 regulatory subunit-associated protein 1-like 1,
partial [Rhipicephalus pulchellus]
Length = 550
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 162/274 (59%), Positives = 202/274 (73%), Gaps = 9/274 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT I++KT+GC+HN SDSEYMAGQL+A GY + D++ AD+WL+N+CTVK+P++
Sbjct: 87 LPGTHKIHVKTWGCAHNSSDSEYMAGQLAAKGYTIVDDARSADLWLLNSCTVKNPAEDHF 146
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCV Q + ++ L G+SIVGVQQ DRVVEVVEETLKG+ VRLL
Sbjct: 147 RGAIEAALHQGKKVVVAGCVSQATPNVGYLRGLSIVGVQQTDRVVEVVEETLKGNSVRLL 206
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK L LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY ++ LV
Sbjct: 207 GSKKEGRRKAGGAPLTLPKIRRNPLVEIIAINTGCLNRCTYCKTKHARGDLGSYPIDELV 266
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV+E+WL+SEDTGAYGRDIGV LP LL +V +P MLR+GMTNPP+
Sbjct: 267 ARAKQAFEEGVREIWLTSEDTGAYGRDIGVTLPDLLREMVQVIPE--GCMLRLGMTNPPY 324
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
IL+HL+++AE+L HP VYSFLHVPVQSGSD VL+
Sbjct: 325 ILDHLEDMAEILNHPRVYSFLHVPVQSGSDPVLT 358
>gi|340723640|ref|XP_003400197.1| PREDICTED: CDKAL1-like protein-like [Bombus terrestris]
Length = 540
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 160/274 (58%), Positives = 205/274 (74%), Gaps = 9/274 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT+TIY KT+GC+HN SDSEYMAGQL+A+GY LT+N EAD+WL+N+CTVK+P++
Sbjct: 56 VPGTQTIYTKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYEADLWLLNSCTVKNPAEDHF 115
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGRKMGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175
Query: 175 HR-------KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ +L LPK+RRN +EI+ IN GCL CTYCKTKHARG LGSY + +V
Sbjct: 176 QQKKEGGKKIGGASLRLPKIRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIV 235
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R +GV E+WL+SEDTG YGRDIG +LP LL +V ++ PDG +R+GMTNPP+
Sbjct: 236 ERAIQAFDEGVCELWLTSEDTGTYGRDIGTSLPELLWTLV-KVVPDGCR-IRVGMTNPPY 293
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
ILEHL+E++++L HP VYSFLH+PVQSGSD VL+
Sbjct: 294 ILEHLEEMSKILSHPKVYSFLHIPVQSGSDQVLA 327
>gi|312384872|gb|EFR29498.1| hypothetical protein AND_01451 [Anopheles darlingi]
Length = 526
Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 203/273 (74%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP T+ IYMKT+GC+HN SD+EYMAGQL+ +GY LT + + AD+W++N+CTVK+PS+
Sbjct: 62 IPETQQIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKKAADLWVLNSCTVKNPSEDTF 121
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I A K +VVAGCVPQ + L G+S+VGVQQIDRV EVVEETLKGH VRLL
Sbjct: 122 RNEIEAAHRAGKHVVVAGCVPQAAPRSDYLHGLSVVGVQQIDRVAEVVEETLKGHSVRLL 181
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ P L LPKVR+N +E++PIN GCL +CTYCKTK AR L SY V+ +V
Sbjct: 182 QAKKVNGRKVAGPKLALPKVRKNPLIEVIPINSGCLNSCTYCKTKFARADLVSYPVQEIV 241
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + V +GV E+WL+SEDTG YGRDI +LP LL +V E+ P+G M+R+GMTNPP+
Sbjct: 242 ERAQQVFEEGVCEIWLTSEDTGTYGRDIDSSLPELLWKLV-EVIPEGC-MMRLGMTNPPY 299
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A+VL HP VYSFLH+PVQSGSD +L
Sbjct: 300 ILEHLEEMAKVLAHPRVYSFLHIPVQSGSDTIL 332
>gi|195488757|ref|XP_002092449.1| GE14196 [Drosophila yakuba]
gi|194178550|gb|EDW92161.1| GE14196 [Drosophila yakuba]
Length = 552
Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 164/274 (59%), Positives = 204/274 (74%), Gaps = 11/274 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ EEAD+WL+N+CTVK+PS+
Sbjct: 67 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKEEADLWLLNSCTVKNPSEDTF 125
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 126 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGNSVQLL 185
Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
KK L LPKVR+N+ +EI+ IN GCL CTYCKTKHARG L SY E +
Sbjct: 186 QNKKKVHGRRVAGAPLSLPKVRKNRLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 245
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP
Sbjct: 246 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 303
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL
Sbjct: 304 YILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVL 337
>gi|449279432|gb|EMC87024.1| CDK5 regulatory subunit-associated protein 1-like 1, partial
[Columba livia]
Length = 515
Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 157/273 (57%), Positives = 202/273 (73%), Gaps = 11/273 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+CTVK+P++
Sbjct: 58 IPGVQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAEDHF 117
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + KK +V+AGCVPQ L+G+SI+GV ++EVVEET+KGH VRLL
Sbjct: 118 RNSIKKAQEGKKKVVLAGCVPQAQPRQDYLKGLSIIGVCIF--IIEVVEETIKGHSVRLL 175
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 176 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 235
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 236 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEAIPE--GAMLRLGMTNPPY 293
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 294 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVL 326
>gi|194882251|ref|XP_001975226.1| GG22199 [Drosophila erecta]
gi|190658413|gb|EDV55626.1| GG22199 [Drosophila erecta]
Length = 557
Score = 330 bits (846), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 164/274 (59%), Positives = 204/274 (74%), Gaps = 11/274 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ EEAD+WL+N+CTVK+PS+
Sbjct: 68 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GKEEADLWLLNSCTVKNPSEDTF 126
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 127 RNEIKLGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGNSVQLL 186
Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
KK L LPKVR+N+ +EI+ IN GCL CTYCKTKHARG L SY E +
Sbjct: 187 QNKKKVHGRRVAGAPLSLPKVRKNQLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 246
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP
Sbjct: 247 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 304
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL
Sbjct: 305 YILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVL 338
>gi|357625033|gb|EHJ75587.1| hypothetical protein KGM_15103 [Danaus plexippus]
Length = 538
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 160/275 (58%), Positives = 198/275 (72%), Gaps = 10/275 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT+TIY+KT+GC+HN SDSEYMAG L+A GY LT++ A +WL+N+CTVKSP++
Sbjct: 57 VPGTQTIYVKTWGCAHNNSDSEYMAGLLAAHGYKLTEDKFSAQLWLLNSCTVKSPAEDHF 116
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + LV+AGCVPQG+ L G+S+VGV QIDR+VE+VEETLKGH VRL
Sbjct: 117 KNEIELAQKRGIHLVLAGCVPQGAPRSGYLAGLSVVGVHQIDRIVEIVEETLKGHTVRLF 176
Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+KK +L LPKVR+N +EI+PIN GCL CTYCKTKHARG LGSY E +
Sbjct: 177 GQKKTEEGRKAGGASLLLPKVRKNPLIEIIPINTGCLNQCTYCKTKHARGELGSYPPEEI 236
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V R +GV E+WL+SEDTG YGRDIG +LP LL +VA +P LR+GMTNPP
Sbjct: 237 VERATQSFKEGVCEIWLTSEDTGTYGRDIGTSLPYLLKQLVAVIPE--GCRLRLGMTNPP 294
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ILEHL E+AE++ HP VY FLHVPVQSGSD VL+
Sbjct: 295 YILEHLAEVAEIMHHPRVYKFLHVPVQSGSDQVLA 329
>gi|170028512|ref|XP_001842139.1| aq_284 [Culex quinquefasciatus]
gi|167876261|gb|EDS39644.1| aq_284 [Culex quinquefasciatus]
Length = 555
Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 161/277 (58%), Positives = 204/277 (73%), Gaps = 9/277 (3%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
L IPGT+ IY+KT+GC+HN SDSEYMAGQL+++GY +T + +A++WL+N+CTVK+PS
Sbjct: 59 LESVIPGTQRIYLKTWGCAHNSSDSEYMAGQLASYGYNITTDKTDANLWLLNSCTVKNPS 118
Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
+ I + K +V+AGCVPQ + + + G+SIVGVQQ+DRV EVVEETLKGH
Sbjct: 119 EDTFRNEILAAEKMGKHVVLAGCVPQAAPKSEYMHGLSIVGVQQLDRVTEVVEETLKGHS 178
Query: 171 VRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
VRLL KK+ P L LPKVR+N +EI+PIN GCL CTYCKTK AR L SY V
Sbjct: 179 VRLLQPKKVNGKKVAGPNLALPKVRKNPLIEIIPINSGCLNTCTYCKTKFARADLISYPV 238
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
E ++ R V +GV E+WL+SEDTG YGRDIG +LP LL +V E+ PD + LR+GMT
Sbjct: 239 EEIIERATQVFQEGVCEIWLTSEDTGTYGRDIGSSLPELLWKLV-EVIPD-NCRLRLGMT 296
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
NPP+ILEHL E+A++L HP VY FLHVPVQSGSD+VL
Sbjct: 297 NPPYILEHLDEMAKILAHPKVYGFLHVPVQSGSDSVL 333
>gi|167533429|ref|XP_001748394.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773206|gb|EDQ86849.1| predicted protein [Monosiga brevicollis MX1]
Length = 466
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 158/295 (53%), Positives = 207/295 (70%), Gaps = 25/295 (8%)
Query: 38 PRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEAD 97
PR HD + IPG++TI+++T+GCSHN SD EYMAG LSA GY ++D E AD
Sbjct: 30 PR-HDRSRREQAEGDSFIPGSKTIFLRTWGCSHNNSDGEYMAGLLSAAGYTISDKREGAD 88
Query: 98 IWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDR 157
+W++N+CTVK+PS+ + I +S P+V+AGCVPQ QIDR
Sbjct: 89 LWILNSCTVKTPSEDTFNNEIRDARSRNIPVVLAGCVPQ---------------TMQIDR 133
Query: 158 VVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCK 210
VVEVVEETL+G VRLL KK+ ALDLPK+RRN +EI+PIN GCL CTYCK
Sbjct: 134 VVEVVEETLQGRTVRLLGSKKVDGRKTGGTALDLPKIRRNPLIEIIPINTGCLNKCTYCK 193
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270
TKHARG LGSYT++ +V RV+ VIA+GV E+WL+SEDTGAYGRDI ++P LL AI+A +
Sbjct: 194 TKHARGDLGSYTIQEIVQRVQQVIAEGVVEIWLTSEDTGAYGRDINTSIPELLRAILAVV 253
Query: 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
P M+R+GMTNPP+I+EH++ IAE LRHP +Y F+H+P+QSG++ +L Q+
Sbjct: 254 P--AGVMVRLGMTNPPYIVEHVQAIAECLRHPRMYKFIHIPIQSGANPILHAMQR 306
>gi|328718445|ref|XP_001945556.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Acyrthosiphon pisum]
Length = 522
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 172/326 (52%), Positives = 225/326 (69%), Gaps = 17/326 (5%)
Query: 3 DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIY 62
DIEDL++ S A G P N V + PK K KP H ++PGT+TI+
Sbjct: 8 DIEDLIS-SVADVAEIGRVKPRNIVSLRPKV-KVKPVREILHPPS------QVPGTQTIF 59
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+KT+GCSHN SD EYMAG LS +GY +T++ AD+W++N+CTVK+P++ I+ K
Sbjct: 60 IKTWGCSHNSSDGEYMAGLLSNYGYKITEDKAIADLWILNSCTVKNPAEDHFRNEISTGK 119
Query: 123 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL--- 179
+ K +VVAGCVPQG + ++ +S++GVQQIDRVVEVVEETLKGH +RLL +KK+
Sbjct: 120 KSGKFVVVAGCVPQGDQKSPFIQNLSVIGVQQIDRVVEVVEETLKGHTIRLLGQKKINGK 179
Query: 180 ----PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
L LPK+R+NK +EI+ I+ GCL CTYCKTKHARG+LGSY + +V R
Sbjct: 180 KDGGARLQLPKMRKNKLIEIIAISTGCLNQCTYCKTKHARGNLGSYPPDEIVQRAIESFN 239
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G E+WL+SEDTGAYG DI NLP LL +VA +P M+RIGMTNPP+IL HL+EI
Sbjct: 240 EGAVELWLTSEDTGAYGLDIQTNLPELLWRLVAIIPE--GCMMRIGMTNPPYILNHLEEI 297
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLS 321
A++L HP VY+FLHVPVQSGS+ VL+
Sbjct: 298 AKILSHPRVYAFLHVPVQSGSNQVLA 323
>gi|115618009|ref|XP_792404.2| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Strongylocentrotus purpuratus]
Length = 556
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 172/304 (56%), Positives = 220/304 (72%), Gaps = 13/304 (4%)
Query: 25 NAVGVNPK-YNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLS 83
N V PK N+ K R + K S+ IPGT+ +++KT+GCSHN SD EYMAGQL+
Sbjct: 29 NKQDVMPKVLNRKKDRRKNGEDIKADSI---IPGTQKVFVKTWGCSHNNSDGEYMAGQLA 85
Query: 84 AFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKE 143
++GY++TD+S AD+WL+N+CTVK+P++ I K + K LV+AGCVPQG K
Sbjct: 86 SYGYSITDDSSGADVWLLNSCTVKNPAEDHFRNEIQKAQQQGKALVLAGCVPQGQPKAKY 145
Query: 144 LEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-------HRKKLPALDLPKVRRNKFVEIL 196
++GVS++GVQQIDRVVEVVEET+KG+ VRL + +LDLPK+RRN VEIL
Sbjct: 146 MQGVSVIGVQQIDRVVEVVEETVKGNTVRLFGQKKQGGKKIGGASLDLPKIRRNPLVEIL 205
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
IN GCL CTYCKTKHARG LGSY E LV R + +GV E+WL+SEDTGAYG DIG
Sbjct: 206 AINTGCLNQCTYCKTKHARGELGSYPPEELVARAKQSFDEGVCEIWLTSEDTGAYGIDIG 265
Query: 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316
V + LL+ +V E+ P+G M+RIGMTNPP+IL+HL+ IA +LRHP VYSFLH+P+QSGS
Sbjct: 266 VTIVELLDQLV-EVIPEG-CMMRIGMTNPPYILDHLEGIARILRHPRVYSFLHIPIQSGS 323
Query: 317 DAVL 320
D+VL
Sbjct: 324 DSVL 327
>gi|313226156|emb|CBY21299.1| unnamed protein product [Oikopleura dioica]
Length = 1581
Score = 323 bits (829), Expect = 6e-86, Method: Composition-based stats.
Identities = 158/273 (57%), Positives = 200/273 (73%), Gaps = 12/273 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSE--EADIWLINTCTVKSPSQSAMD 115
+ IY++T+GC+HN SDSEYMAGQL+ GY + D+++ E D+WL+N+CTVK+P++
Sbjct: 51 QKIYVRTWGCTHNTSDSEYMAGQLAEAGYDVKLDDAKRLECDLWLLNSCTVKAPAEDHFK 110
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
I + P+VVAGCVPQG+ K ++G+S +GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 111 NAINAAQKVNIPVVVAGCVPQGAPSDKFVKGLSTIGVQQIDRVVEVVEETLKGNTVKLLG 170
Query: 176 RKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
KK L LPKVRRN +EI+ IN GCL +CTYCKTKHARG L SY ++ +V
Sbjct: 171 PKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKHARGDLASYPIDEIVA 230
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R G+ EVWL+SEDTGAYGRDIG N+ LLNA+V +P M+RIGMTNPP+I
Sbjct: 231 RFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE--GCMMRIGMTNPPYI 288
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
LEHL+ IA++L HP VYSFLHVPVQSGSDAVL+
Sbjct: 289 LEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLN 321
>gi|342181579|emb|CCC91059.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 578
Score = 323 bits (828), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 156/279 (55%), Positives = 205/279 (73%), Gaps = 13/279 (4%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
P IPG T+++ TFGC HN SD EYMAGQL+ G+ +TD +ADI+L+N+CTVK+PS+
Sbjct: 82 PGIPGNATVFVHTFGCGHNMSDGEYMAGQLAQSGFQITDEFSQADIYLLNSCTVKNPSEE 141
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
++ + ++ KPLVVAGCVPQ D K+ VS++GV+ IDRV VV ETL+G+ VR
Sbjct: 142 HFVNMMNRVRATGKPLVVAGCVPQADPDNKQWAEVSVIGVRSIDRVSYVVNETLQGNCVR 201
Query: 173 LL----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
L+ KLPALDLPKVRRNK++EI+PI+VGCL CTYCKTK+ARG L SY
Sbjct: 202 LIGSDKEQLRVGESDKLPALDLPKVRRNKYIEIIPISVGCLNCCTYCKTKYARGDLRSYP 261
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIG 281
V +VGRVR V+ DGVKE+ L+SED+GAYG DIG ++ LL A+ AEL +GS MLR+G
Sbjct: 262 VSEIVGRVREVVDDGVKEIRLTSEDSGAYGIDIGTDIVQLLRAVAAEL--EGSDVMLRVG 319
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
M+NPP++L H+ + A +LRHP VY F+H+PVQSGS+ +L
Sbjct: 320 MSNPPYLLRHVDDFASILRHPNVYEFVHIPVQSGSNRIL 358
>gi|391334616|ref|XP_003741698.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Metaseiulus occidentalis]
Length = 521
Score = 323 bits (828), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 169/327 (51%), Positives = 216/327 (66%), Gaps = 21/327 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIEDL G+ P G +P + P K+K H + +PG +
Sbjct: 14 VDDIEDLDFGNFPRPEPRGQVVP-KIIRKAP--TKDKEEFHGDSF---------VPGHQK 61
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GCSHN SDSEYM G LSA GY + N +EA +WL+N+CTVK+PS+ + I
Sbjct: 62 IYVKTWGCSHNSSDSEYMGGMLSAAGYPIVSNKDEASLWLLNSCTVKNPSEEHLKNSIRS 121
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
S K +VV GCV Q + L+G+SIVG QIDRVVEVVEETLKG+ VRLL K +
Sbjct: 122 ALSQNKKVVVTGCVSQAEPKAEFLQGLSIVGTHQIDRVVEVVEETLKGNSVRLLGAKSVK 181
Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L LPK+R+N VEIL IN GCL CTYCKTK ARG+LGSY +E +V R +
Sbjct: 182 GKKQGGAKLSLPKIRKNPLVEILAINTGCLNHCTYCKTKMARGNLGSYPIEDIVERCKQS 241
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GVKE+W++SEDTGAYGRDIG+ LP LL +V +P LR+GMTNPP+I++HL+
Sbjct: 242 FQEGVKEIWMTSEDTGAYGRDIGLTLPELLREVVKVIPE--GCYLRLGMTNPPYIMDHLE 299
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++AE+L HP VYSFLH+PVQSGSD VL
Sbjct: 300 DMAEILSHPRVYSFLHIPVQSGSDPVL 326
>gi|326429727|gb|EGD75297.1| cdk5 regulatory subunit associated protein 1 [Salpingoeca sp. ATCC
50818]
Length = 530
Score = 323 bits (827), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 164/328 (50%), Positives = 224/328 (68%), Gaps = 13/328 (3%)
Query: 2 EDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETI 61
++IE+ AG GG RLP + V + + K R+ + + G + +PG +
Sbjct: 3 DEIEEAAAGLVGGVRRT--RLPGDGVAI-----QQKRRVPEGDRVEQGKDAGFVPGCACV 55
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GCSHN SD EYMAG LSA GY + + AD+W++N+CTVK+PS+ + I +
Sbjct: 56 YIRTWGCSHNTSDGEYMAGVLSAAGYEIVKDKMTADLWILNSCTVKTPSEDTFNNAIREG 115
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+ K LV+AGCV Q K +G+SIVG+ QIDRV+EVVEETL+G VRLL +K A
Sbjct: 116 QKLGKKLVLAGCVAQAQPRGKMTQGLSIVGIHQIDRVLEVVEETLQGRTVRLLSKKSSGA 175
Query: 182 ----LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L +PK+RRN+ +EI+PIN GCL CTYCKTKHARG L SY + +V RVR V+A+G
Sbjct: 176 GGAPLAMPKIRRNELIEIIPINTGCLNQCTYCKTKHARGQLNSYPADEIVARVRQVVAEG 235
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
V E+WL+SEDTG YGRD + LL I+ E+ PDG MLR+GMTNPP+ILEHL+E+A+
Sbjct: 236 VVEIWLTSEDTGTYGRDRDDTIVNLLWKII-EVLPDG-VMLRVGMTNPPYILEHLEEMAK 293
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+L HP VY+FLH+P+Q+ SDAVL+ ++
Sbjct: 294 ILNHPRVYAFLHIPIQAASDAVLTTMKR 321
>gi|313220891|emb|CBY31727.1| unnamed protein product [Oikopleura dioica]
Length = 1590
Score = 323 bits (827), Expect = 1e-85, Method: Composition-based stats.
Identities = 158/273 (57%), Positives = 199/273 (72%), Gaps = 12/273 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSE--EADIWLINTCTVKSPSQSAMD 115
+ IY++T+GC+HN SDSEYMAGQL+ GY + D+++ E D+WL+N+CTVK+P++
Sbjct: 51 QKIYVRTWGCTHNTSDSEYMAGQLAEAGYDVKLDDAKRLECDLWLLNSCTVKAPAEDHFK 110
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
I P+VVAGCVPQG+ K ++G+S +GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 111 NAINAAHKVNIPVVVAGCVPQGAPSDKFVKGLSTIGVQQIDRVVEVVEETLKGNTVKLLG 170
Query: 176 RKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
KK L LPKVRRN +EI+ IN GCL +CTYCKTKHARG L SY ++ +V
Sbjct: 171 PKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKHARGDLASYPIDEIVA 230
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R G+ EVWL+SEDTGAYGRDIG N+ LLNA+V +P M+RIGMTNPP+I
Sbjct: 231 RFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE--GCMMRIGMTNPPYI 288
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
LEHL+ IA++L HP VYSFLHVPVQSGSDAVL+
Sbjct: 289 LEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLN 321
>gi|328773588|gb|EGF83625.1| hypothetical protein BATDEDRAFT_1672, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 446
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 162/289 (56%), Positives = 207/289 (71%), Gaps = 17/289 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNS--EEADIWLINTCTVKSPSQ 111
+PG ++++KT+GC HN SD EYMAG L+A GY + D+S EEA +W++N+CTVK PSQ
Sbjct: 1 LPGQASVFVKTWGCGHNNSDGEYMAGLLAADGYNVILDHSKAEEAQVWVLNSCTVKGPSQ 60
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
I K K A K +VVAGCVPQ S E +G+S++GVQQID+VV VVEETLKG+ +
Sbjct: 61 QTFVNDIDKGKLAGKKIVVAGCVPQASPSNDEWKGLSVIGVQQIDQVVRVVEETLKGNTI 120
Query: 172 RLLHRKKLPA------------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
RL+ K + LDLPKVRRN F+EI+PIN GCL CTYCKTKHARG LG
Sbjct: 121 RLMKEAKEVSADGVKRKAGGARLDLPKVRRNPFIEIIPINTGCLNQCTYCKTKHARGDLG 180
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD--GSTM 277
SY++ ++ RV +V+ +GVKE+WL+SEDTGAYGRDIGV++ LL I+ + M
Sbjct: 181 SYSLAEIIARVESVLHEGVKEIWLTSEDTGAYGRDIGVSIVDLLEGILVAMDKHIVQDAM 240
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKI 326
LR+GMTNPP+ILEHLK IA+VL HP VYSFLHVPVQ+GS VL +++
Sbjct: 241 LRVGMTNPPYILEHLKGIAKVLNHPKVYSFLHVPVQAGSTKVLDDMRRL 289
>gi|294900097|ref|XP_002776898.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
50983]
gi|239884099|gb|EER08714.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
50983]
Length = 554
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 151/277 (54%), Positives = 201/277 (72%), Gaps = 2/277 (0%)
Query: 46 SKTGSLSPKIPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC 104
S GS +PG + I+ KTFGCSHN SDSEYM G LS +GY +AD+ ++N+C
Sbjct: 110 SVVGSGDGNLPGAGQKIFFKTFGCSHNTSDSEYMMGLLSRYGYDFVGKIADADVVVLNSC 169
Query: 105 TVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE 164
TVK+PS+ A+ TL+ ++ P VV GCVPQ R + L S+VG QIDR+VEVVEE
Sbjct: 170 TVKNPSEDALATLVKAAEAEGLPTVVCGCVPQADRKSRALRNASLVGTSQIDRIVEVVEE 229
Query: 165 TLKGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
TL+G+ V LL KKLP L +LPK+RRN VEI+ +N GCLG C+YCKTK+ARG LGSY+
Sbjct: 230 TLRGNRVSLLQSKKLPELRELPKIRRNPLVEIVAVNTGCLGKCSYCKTKYARGSLGSYSK 289
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
E ++ RVRT +A+GV+++WL+SED GAYG DIG N+ LL IV EL +M+R+GMT
Sbjct: 290 EDIIARVRTALAEGVQQIWLTSEDLGAYGLDIGTNVAELLREIVGELEKYPDSMMRLGMT 349
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
NPP+IL+H +E+A++L HP V+ F+H+P+QSGS+ VL
Sbjct: 350 NPPYILQHAEEVAKILTHPQVFEFIHIPIQSGSNDVL 386
>gi|312076345|ref|XP_003140819.1| CDK5 regulatory subunit-associated protein 1-like 1 [Loa loa]
Length = 478
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 164/322 (50%), Positives = 224/322 (69%), Gaps = 18/322 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIED++ P L N V V + + + + +PGT+
Sbjct: 1 MEDIEDVIR------VPTAVNLRQNHVIVRKRLKGDGEPFYGDSF---------VPGTQK 45
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC+HN SDSE MAG LS G+ LT+ E+A +W++N+CTVK+PS++ ++ + +
Sbjct: 46 IYIRTWGCTHNTSDSEQMAGLLSEAGHQLTNKKEDASLWILNSCTVKTPSETQLENTVKE 105
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRKKL 179
+ K ++VAGCV Q +L+ LEG+SIVGV+QI+ V + VEETLKG+ VR L RK
Sbjct: 106 ARKLNKFIIVAGCVSQAEPNLRFLEGISIVGVKQIECVTQAVEETLKGNCVRFLSQRKPN 165
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
L LPK+R+NKF+EIL I+ GCL CTYCKTK ARG+L S+ ++SL+ R R ADG K
Sbjct: 166 SNLLLPKIRKNKFIEILAISSGCLNHCTYCKTKSARGNLVSFPLDSLLERARNAFADGCK 225
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+WL+SED GA+GRDI + LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L+EI+E+L
Sbjct: 226 ELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIPEG-CMLRLGMTNPPYILDFLEEISEIL 283
Query: 300 RHPCVYSFLHVPVQSGSDAVLS 321
HP VYSFLH+PVQS SDAVL+
Sbjct: 284 NHPRVYSFLHIPVQSASDAVLA 305
>gi|323100040|gb|ADX30521.1| MiaB-like protein 1 [Plutella xylostella]
Length = 542
Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 169/329 (51%), Positives = 215/329 (65%), Gaps = 16/329 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIEDL+ S P V V + N K ++ + L +PGT+T
Sbjct: 9 IDDIEDLI--SSQDITPKERYASRKNVSVRSRKNNTK----ESEPVEKVILQSVVPGTQT 62
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SDSEYM G L+A GY LTD+ A +WL+N+CTVK+P++ I
Sbjct: 63 IYVKTWGCAHNNSDSEYMVGLLAAQGYQLTDDKWSAQLWLLNSCTVKNPAEEHFRNEIEL 122
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
++ +VVAGCVPQG+ L G+SIVGV QIDR+VE+VEETLKGH VRL +KK
Sbjct: 123 GQARGIHVVVAGCVPQGAPRAGYLAGLSIVGVHQIDRIVEIVEETLKGHTVRLFGQKKTD 182
Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+L LPKVR+N +EI+ IN GCL CTYCKTKHARG LGSY E +V R R
Sbjct: 183 DGKKAGGASLQLPKVRKNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERARQ 242
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+WL+SEDTG YGRDIG +LP LL+ VA +P LR+GMTNPP++LEHL
Sbjct: 243 SFKEGVCEIWLTSEDTGTYGRDIGTSLPELLDQPVAAIP--AGCRLRLGMTNPPYMLEHL 300
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+A ++RH VY FLHVPVQSGSD VL+
Sbjct: 301 PRVAGIMRHSRVYKFLHVPVQSGSDQVLA 329
>gi|393907189|gb|EFO23252.2| MiaB-like tRNA modifying enzyme [Loa loa]
Length = 465
Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 164/322 (50%), Positives = 224/322 (69%), Gaps = 18/322 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIED++ P L N V V + + + + +PGT+
Sbjct: 1 MEDIEDVIR------VPTAVNLRQNHVIVRKRLKGDGEPFYGDSF---------VPGTQK 45
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC+HN SDSE MAG LS G+ LT+ E+A +W++N+CTVK+PS++ ++ + +
Sbjct: 46 IYIRTWGCTHNTSDSEQMAGLLSEAGHQLTNKKEDASLWILNSCTVKTPSETQLENTVKE 105
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRKKL 179
+ K ++VAGCV Q +L+ LEG+SIVGV+QI+ V + VEETLKG+ VR L RK
Sbjct: 106 ARKLNKFIIVAGCVSQAEPNLRFLEGISIVGVKQIECVTQAVEETLKGNCVRFLSQRKPN 165
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
L LPK+R+NKF+EIL I+ GCL CTYCKTK ARG+L S+ ++SL+ R R ADG K
Sbjct: 166 SNLLLPKIRKNKFIEILAISSGCLNHCTYCKTKSARGNLVSFPLDSLLERARNAFADGCK 225
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+WL+SED GA+GRDI + LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L+EI+E+L
Sbjct: 226 ELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIPEGC-MLRLGMTNPPYILDFLEEISEIL 283
Query: 300 RHPCVYSFLHVPVQSGSDAVLS 321
HP VYSFLH+PVQS SDAVL+
Sbjct: 284 NHPRVYSFLHIPVQSASDAVLA 305
>gi|427797957|gb|JAA64430.1| Putative cdk5 regulatory subunit associated protein 1-like 1,
partial [Rhipicephalus pulchellus]
Length = 541
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 164/301 (54%), Positives = 206/301 (68%), Gaps = 36/301 (11%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-- 112
+PGT I++KT+GC+HN SDSEYMAGQL+A GY + D++ AD+WL+N+CTVK+P++
Sbjct: 51 LPGTHKIHVKTWGCAHNSSDSEYMAGQLAAKGYTIVDDARSADLWLLNSCTVKNPAEDHF 110
Query: 113 ----------------------AMDTLIAKCKSA---KKPLVVAGCVPQGSRDLKELEGV 147
A D ++A K +VVAGCV Q + ++ L G+
Sbjct: 111 RGAIEAALHQGKKVVVAGXXNPAEDHFRGAIEAALHQGKKVVVAGCVSQATPNVGYLRGL 170
Query: 148 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINV 200
SIVGVQQ DRVVEVVEETLKG+ VRLL KK L LPK+RRN VEI+ IN
Sbjct: 171 SIVGVQQTDRVVEVVEETLKGNSVRLLGSKKEGRRKAGGAPLTLPKIRRNPLVEIIAINT 230
Query: 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLP 260
GCL CTYCKTKHARG LGSY ++ LV R + +GV+E+WL+SEDTGAYGRDIGV LP
Sbjct: 231 GCLNRCTYCKTKHARGDLGSYPIDELVARAKQAFEEGVREIWLTSEDTGAYGRDIGVTLP 290
Query: 261 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
LL +V +P MLR+GMTNPP+IL+HL+++AE+L HP VYSFLHVPVQSGSD VL
Sbjct: 291 DLLREMVQVIPE--GCMLRLGMTNPPYILDHLEDMAEILNHPRVYSFLHVPVQSGSDPVL 348
Query: 321 S 321
+
Sbjct: 349 T 349
>gi|300176745|emb|CBK24410.2| unnamed protein product [Blastocystis hominis]
Length = 507
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 144/271 (53%), Positives = 198/271 (73%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP +++ TFGC+HN +D EYM G LS +G+ +N +EA +W++N+CTVK PS+
Sbjct: 48 IPEKYKLWIITFGCAHNFADGEYMKGILSDYGFQFAENRDEASLWVLNSCTVKDPSEIVF 107
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + K K +VVAGCVPQ D L +SI+GV+QI R+VEVVEETLKG+ + LL
Sbjct: 108 RNYVTEAKEKNKMVVVAGCVPQADSDASWLRDLSILGVKQIHRIVEVVEETLKGNTIHLL 167
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
K+LP LDLPK+RR+ +EI+PI+ GCLG CTYCKT++ARG L SY ++S++ R+R
Sbjct: 168 SLKELPPLDLPKIRRDPHIEIVPISEGCLGHCTYCKTQYARGKLMSYPLQSIINRLRAAF 227
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+ V EVWLSSEDTGAYG D G+++ LL I + +P +TM+R+GMTNPP++L HLKE
Sbjct: 228 DEHVFEVWLSSEDTGAYGIDRGLSIADLLKEIPSVIPDQSNTMVRLGMTNPPYVLSHLKE 287
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+A LRHP V+SF+H+PVQSGS+AVL+ Q+
Sbjct: 288 VAAFLRHPNVFSFIHIPVQSGSNAVLNTMQR 318
>gi|297677249|ref|XP_002816517.1| PREDICTED: LOW QUALITY PROTEIN: threonylcarbamoyladenosine tRNA
methylthiotransferase, partial [Pongo abelii]
Length = 577
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 152/273 (55%), Positives = 202/273 (73%), Gaps = 9/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +VVAGCVPQ L+G+SI+GVQQIDRVVEVVEET+KG+ V L
Sbjct: 120 RNSIKKAQEENKKIVVAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGYSVSHL 179
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ K L L K ++ V ++ +N CL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 CKYKQNGARLHGARLRLKKKKKKCVVSLISLNTXCLNACTYCKTKHARGNLASYPIDELV 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVL 330
>gi|261328871|emb|CBH11849.1| tRNA modification enzyme, putative [Trypanosoma brucei gambiense
DAL972]
Length = 535
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/279 (55%), Positives = 200/279 (71%), Gaps = 13/279 (4%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
P IPG TI++ TFGC HN SD EYMAGQL GY +TD +AD +L+N+CTVK+PS+
Sbjct: 45 PGIPGNATIFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEE 104
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+++ + + KPL+VAGCVPQ K+ VS+VGV+ IDRV VV+E L+G+ VR
Sbjct: 105 HFVSMMNRVRDTGKPLIVAGCVPQADPTNKQWGDVSVVGVRSIDRVSYVVQEALQGNCVR 164
Query: 173 LL----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
LL +LPALDLPKVRRNK++EI+PI+VGCL CTYCKTK ARG L SY
Sbjct: 165 LLGETEDQRQSNDSNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDLRSYP 224
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIG 281
VE +V RVR V+ DGVKE+ L+SED+GAYG DIG ++ LL A+ EL +G+ MLR+G
Sbjct: 225 VEVIVDRVREVVRDGVKEIRLTSEDSGAYGIDIGTDVVYLLQAVAVEL--EGTDVMLRVG 282
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
M+NPP++L H+ A VL+HP VY F+H+PVQSGSD++L
Sbjct: 283 MSNPPYLLRHVDGFATVLKHPNVYEFVHIPVQSGSDSIL 321
>gi|72390349|ref|XP_845469.1| tRNA modification enzyme [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359495|gb|AAX79931.1| tRNA modification enzyme, putative [Trypanosoma brucei]
gi|70802004|gb|AAZ11910.1| tRNA modification enzyme, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 535
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/279 (54%), Positives = 199/279 (71%), Gaps = 13/279 (4%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
P IPG TI++ TFGC HN SD EYMAGQL GY +TD +AD +L+N+CTVK+PS+
Sbjct: 45 PGIPGNATIFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEE 104
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+++ + + KPL+VAGCVPQ K+ VS+VGV+ ID V VV+E L+G+ VR
Sbjct: 105 HFVSMMNRVRDTGKPLIVAGCVPQADPTNKQWGDVSVVGVRSIDCVSYVVQEALQGNCVR 164
Query: 173 LL----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
LL +LPALDLPKVRRNK++EI+PI+VGCL CTYCKTK ARG L SY
Sbjct: 165 LLGETEDQRQSNESNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDLRSYP 224
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIG 281
VE +V RVR V+ DGVKE+ L+SED+GAYG DIG ++ LL A+ EL +G+ MLR+G
Sbjct: 225 VEVIVDRVREVVRDGVKEIRLTSEDSGAYGIDIGTDVVYLLRAVAVEL--EGTDVMLRVG 282
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
M+NPP++L H+ A VL+HP VY F+H+PVQSGSD++L
Sbjct: 283 MSNPPYLLRHVDGFATVLKHPNVYEFVHIPVQSGSDSIL 321
>gi|308497879|ref|XP_003111126.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
gi|308240674|gb|EFO84626.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
Length = 560
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 164/334 (49%), Positives = 224/334 (67%), Gaps = 29/334 (8%)
Query: 3 DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT-ETI 61
DIED++ G G G+ + I PK ++ P ++ +PG + +
Sbjct: 2 DIEDIV-GRGPVGSRDAAEIKIRTRKQLPKEKEDVP-----------NVDSMVPGVGQKV 49
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GCSHN SDSEYMAG L GY + E AD+W++N+CTVK+PS+ + L+ +
Sbjct: 50 WVRTWGCSHNTSDSEYMAGLLQQAGYDVLKEGEAADVWILNSCTVKTPSEQQANNLVVQG 109
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE----------- 170
+ K +++AGCV Q + L+ VSIVGV+QIDR+VEVVEETLKG++
Sbjct: 110 QEQGKKIIMAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVEETLKGNKVLPTILRTSRL 169
Query: 171 -VRLLHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
VRLL R + A L LPK+R+N+ +E+L I+ GCL CTYCKTK ARG L SY +E LV
Sbjct: 170 HVRLLTRNRPDALLSLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLEDLVE 229
Query: 229 RVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+ R D GVKE+WL+SED GA+GRDI + LP LLNA+V ++ PDGS M+R+GMTNPP+
Sbjct: 230 QARAAFHDEGVKELWLTSEDLGAWGRDINLVLPDLLNALV-KVIPDGS-MMRLGMTNPPY 287
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
IL+HL+EIAE+L HP VY+FLH+PVQS SDAVL+
Sbjct: 288 ILDHLEEIAEILNHPKVYAFLHIPVQSASDAVLT 321
>gi|268535520|ref|XP_002632893.1| Hypothetical protein CBG15101 [Caenorhabditis briggsae]
Length = 437
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 151/270 (55%), Positives = 204/270 (75%), Gaps = 5/270 (1%)
Query: 55 IPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
+PG + ++++T+GCSHN SDSEYMAG L GY + E AD+W++N+CTVK+PS+
Sbjct: 4 VPGVGQKVWVRTWGCSHNTSDSEYMAGLLHKAGYDVLKEGENADVWVLNSCTVKTPSEQQ 63
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
+ L+ + + K +++AGCV Q + L+ VSIVGV+QIDR+VEVVEETLKG++VRL
Sbjct: 64 ANNLVVQGQEQGKKIIMAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVEETLKGNKVRL 123
Query: 174 LHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L R + A L LPK+R+N+ +E+L I+ GCL CTYCKTK ARG L SY +E LV + R
Sbjct: 124 LTRNRPDALLSLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLEDLVEQARA 183
Query: 233 VIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
D GVKE+WL+SED GA+GRDI + LP LLNA+V ++ PDG M+R+GMTNPP+IL+H
Sbjct: 184 AFHDEGVKELWLTSEDLGAWGRDINLVLPDLLNALV-KVIPDGC-MMRLGMTNPPYILDH 241
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
L+EIAE+L +P VY+FLH+PVQS SDAVL+
Sbjct: 242 LEEIAEILNNPKVYAFLHIPVQSASDAVLT 271
>gi|407851980|gb|EKG05664.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
Length = 530
Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 144/281 (51%), Positives = 201/281 (71%), Gaps = 11/281 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP T+++ TFGCSHN SD EYMAG L+ GY +TD +AD++L+N+CTVK+PS+
Sbjct: 45 IPSNATVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHF 104
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLI 164
Query: 175 ----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
KLP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVLRVRSVLKEGVKEIRITSEDVGAYGIDIKTDIVCLLRAIVKEI-QGTEVMMRVGMSN 283
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+ Q+
Sbjct: 284 PPYLLRHLDDFAAILRHPNVYEFVHIPIQSGSNRILNAMQR 324
>gi|71661088|ref|XP_817570.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
gi|70882770|gb|EAN95719.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
Length = 530
Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 144/281 (51%), Positives = 201/281 (71%), Gaps = 11/281 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP T+++ TFGCSHN SD EYMAG L+ GY +TD +AD++L+N+CTVK+PS+
Sbjct: 45 IPSNATVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHF 104
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLI 164
Query: 175 ----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
KLP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVLRVRSVLKEGVKEIRITSEDVGAYGIDINTDIICLLRAIVKEI-QGTEVMMRVGMSN 283
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+ Q+
Sbjct: 284 PPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQR 324
>gi|324507132|gb|ADY43031.1| CDKAL1-like protein [Ascaris suum]
Length = 535
Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 155/267 (58%), Positives = 201/267 (75%), Gaps = 3/267 (1%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGTETI+++T+GCSHN SDSEYM G LS GY + E A +W++N+CTVK+PS+ +
Sbjct: 44 VPGTETIFVRTWGCSHNTSDSEYMTGLLSMAGYNIISTKENASLWVLNSCTVKTPSEDQL 103
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + K K AKK +VVAGCV Q + + L GVS+VGV+QIDR+VEVVEETLKG+ VRLL
Sbjct: 104 ENEVKKAKEAKKFIVVAGCVSQADPNAEFLRGVSLVGVKQIDRIVEVVEETLKGNCVRLL 163
Query: 175 HRKK-LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
RK+ L LPK+RRN +E+L ++ GCL CTYCKTK ARG L SY E LV +
Sbjct: 164 SRKRPEQKLSLPKMRRNNLIEVLAVSSGCLNNCTYCKTKQARGDLVSYPPEELVEQAVRA 223
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
++G +E+WL+SED GA+GRD G+ LP LL A+V ++ P+G M+R+GMTNPP+IL+ L
Sbjct: 224 FSEGCREIWLTSEDLGAWGRDFGMVLPDLLKAMV-DVIPEG-CMMRLGMTNPPYILDFLD 281
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
EIAE+L HP VYSFLH+PVQSGSDAVL
Sbjct: 282 EIAEILNHPRVYSFLHIPVQSGSDAVL 308
>gi|348566232|ref|XP_003468906.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
protein 1-like 1-like [Cavia porcellus]
Length = 613
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 158/314 (50%), Positives = 205/314 (65%), Gaps = 56/314 (17%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+NS EAD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENSSEADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRD---------------------------------- 140
I L + G VP G+R
Sbjct: 119 RNSINFF------LQIFGLVPAGNRHSQWYAQAPGISGPAEPVQPRLLGAGVCTDGWLSS 172
Query: 141 -------LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-------LDLPK 186
+ L G++ V VQQIDRVVEVVEET+KGH VRLL +KK LDLPK
Sbjct: 173 DSTGGERQEHLXGMAHVPVQQIDRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPK 232
Query: 187 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSE 246
+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SE
Sbjct: 233 IRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSE 292
Query: 247 DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306
DTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+
Sbjct: 293 DTGAYGRDIGTSLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYA 350
Query: 307 FLHVPVQSGSDAVL 320
FLH+PVQS SD+VL
Sbjct: 351 FLHIPVQSASDSVL 364
>gi|407416808|gb|EKF37819.1| tRNA modification enzyme, putative [Trypanosoma cruzi marinkellei]
Length = 530
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 145/281 (51%), Positives = 202/281 (71%), Gaps = 11/281 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP T+++ TFGCSHN SD EYMAG LS GY +TD +AD++L+N+CTVK+PS+
Sbjct: 45 IPSNATVFVHTFGCSHNVSDGEYMAGLLSQAGYRVTDVFNDADVYLLNSCTVKNPSEEHF 104
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+G+ VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGNCVRLI 164
Query: 175 ----HRKK------LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
H K LP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GMNEHANKKQDPNELPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVSRVRSVLKEGVKEIRITSEDVGAYGIDINTDIVCLLRAIVKEV-QGTEVMVRVGMSN 283
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+ Q+
Sbjct: 284 PPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQR 324
>gi|71664178|ref|XP_819072.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
gi|70884358|gb|EAN97221.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
Length = 530
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 143/281 (50%), Positives = 200/281 (71%), Gaps = 11/281 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP T+++ TFGCSHN SD EYMAG L+ GY +TD AD++L+N+CTVK+PS+
Sbjct: 45 IPSNATVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNGADVYLLNSCTVKNPSEEHF 104
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLI 164
Query: 175 ----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+LP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GVNEHANNKQDPNELPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVSRVRSVLKEGVKEIRITSEDVGAYGIDINTDIVSLLRAIVKEI-QGTEVMMRVGMSN 283
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+ Q+
Sbjct: 284 PPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQR 324
>gi|403223832|dbj|BAM41962.1| uncharacterized protein TOT_040000341 [Theileria orientalis strain
Shintoku]
Length = 873
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 146/283 (51%), Positives = 200/283 (70%), Gaps = 6/283 (2%)
Query: 40 LHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIW 99
L DN + + S P IY K FGCSHN SD EYM G L +GY + D E++ +
Sbjct: 433 LSDNSMDQLYDAS--TPELTKIYFKNFGCSHNISDGEYMLGLLVEYGYKIVDTMEKSHLV 490
Query: 100 LINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDR 157
+IN+CTVK PS+ AM T+I + P+VV+GCVPQ ++ +S++G+ QIDR
Sbjct: 491 IINSCTVKGPSEEAMVTMIKSAVMSYLPVVVSGCVPQADQNNPVFNNPLISLLGITQIDR 550
Query: 158 VVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
+VEVVE +L+G+++ LL +K LP LDLPK+RRNK +EI+P++ GCLG+CT+CKTKH+RG
Sbjct: 551 IVEVVENSLQGNKMVLLEKKDLPRLDLPKIRRNKLIEIIPLSTGCLGSCTFCKTKHSRGV 610
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 277
LGSY +E ++ RV + + +GVKE+WL+SED GAYG DIG NL LL +IV LP TM
Sbjct: 611 LGSYDIEIILDRVESCVNEGVKEIWLTSEDLGAYGIDIGTNLVTLLRSIVQVLP--QGTM 668
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
LR+GM+NPPFI +++ EI E+L H VY F+H+PVQS S++VL
Sbjct: 669 LRLGMSNPPFIKKYIDEICEILLHDNVYEFIHIPVQSFSNSVL 711
>gi|323509405|dbj|BAJ77595.1| cgd6_1520 [Cryptosporidium parvum]
Length = 493
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 201/294 (68%), Gaps = 16/294 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PG I +K FGC+HN+SDSE M G LS +GY L + +E ++ +IN+CTVK PSQ +
Sbjct: 98 VPGVAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSC 157
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
LI KS +K +VV GCVPQ +L L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 158 QNLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLI 217
Query: 175 HRK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
K LP L LPK+RRN FVEI+ I+VGCLG CTYCKTKH+RG LGS
Sbjct: 218 PDKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKHSRGDLGS 277
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
Y VE+++ R+ + +GVK+ WL+SED GAYG+DIG NL LL I+ LP D M+RI
Sbjct: 278 YPVETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRI 335
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVSL 334
GMTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L + ++ + SL
Sbjct: 336 GMTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSL 389
>gi|66475406|ref|XP_627519.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
II]
gi|32398737|emb|CAD98697.1| conserved hypothetical transmembrane protein [Cryptosporidium
parvum]
gi|46228975|gb|EAK89824.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
II]
Length = 543
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 201/294 (68%), Gaps = 16/294 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PG I +K FGC+HN+SDSE M G LS +GY L + +E ++ +IN+CTVK PSQ +
Sbjct: 98 VPGVAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSC 157
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
LI KS +K +VV GCVPQ +L L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 158 QNLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLI 217
Query: 175 HRK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
K LP L LPK+RRN FVEI+ I+VGCLG CTYCKTKH+RG LGS
Sbjct: 218 PDKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKHSRGDLGS 277
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
Y VE+++ R+ + +GVK+ WL+SED GAYG+DIG NL LL I+ LP D M+RI
Sbjct: 278 YPVETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRI 335
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVSL 334
GMTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L + ++ + SL
Sbjct: 336 GMTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSL 389
>gi|440904068|gb|ELR54635.1| CDK5 regulatory subunit-associated protein 1-like 1, partial [Bos
grunniens mutus]
Length = 302
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/246 (58%), Positives = 187/246 (76%), Gaps = 9/246 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLK 293
ILEHL+
Sbjct: 297 ILEHLE 302
>gi|71029160|ref|XP_764223.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351177|gb|EAN31940.1| hypothetical protein, conserved [Theileria parva]
Length = 750
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 136/267 (50%), Positives = 196/267 (73%), Gaps = 4/267 (1%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
PG +Y+K FGCSHN SDSEYM G +S GYA+TD + D+ +IN+CTVK+PS+ M
Sbjct: 323 PGEVVVYLKNFGCSHNISDSEYMLGIISESGYAITDTMDSCDLVIINSCTVKNPSEHGMI 382
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSR--DLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
I + K ++V GC+PQ + + +S++G+ QI+++V V+E L G+ V +
Sbjct: 383 NYINQGLKLGKKIIVTGCIPQSDKLHPIFNNNNISLLGIMQIEKIVYVIENMLNGNRVVM 442
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L +KKLP+LDLPK+R+NK +EI+PI+ GCLG+CT+CKTKH+RG L SY +ES++ RV +
Sbjct: 443 LEKKKLPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKHSRGVLNSYEIESILDRVESC 502
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I++GVKE+WL+SED GAYG D+G N+ LL++I+A LP D MLR+GM NPP+I +++
Sbjct: 503 ISEGVKEIWLTSEDLGAYGIDLGTNIITLLHSIIAVLPKD--IMLRLGMCNPPYIKKYIS 560
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+ E+LRH V+ F+H+PVQS SD+VL
Sbjct: 561 EVCEILRHENVFEFIHIPVQSCSDSVL 587
>gi|67623743|ref|XP_668154.1| transmembrane protein [Cryptosporidium hominis TU502]
gi|54659343|gb|EAL37924.1| transmembrane protein [Cryptosporidium hominis]
Length = 543
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 147/294 (50%), Positives = 200/294 (68%), Gaps = 16/294 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PG I +K FGC+HN+SDSE M G LS +GY L + +E ++ +IN+CTVK PSQ +
Sbjct: 98 VPGIAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSC 157
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
LI KS +K +VV GCVPQ +L L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 158 QNLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLI 217
Query: 175 HRK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
K LP L LPK+RRN FVEI+ I+VGCLG CTYCKTK +RG LGS
Sbjct: 218 PDKMEGKSGQLIDSLEMSLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKQSRGDLGS 277
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
Y +E+++ R+ + +GVK+ WL+SED GAYG+DIG NL LL I+ LP D M+RI
Sbjct: 278 YPIETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRI 335
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVSL 334
GMTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L + ++ + SL
Sbjct: 336 GMTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSL 389
>gi|209878518|ref|XP_002140700.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
gi|209556306|gb|EEA06351.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
Length = 548
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 138/286 (48%), Positives = 200/286 (69%), Gaps = 20/286 (6%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
K+PG I M+ FGC+HN+SDSE M G L +GY + + ++ D+ +IN+CTVKSPS+ +
Sbjct: 83 KVPGIGRIMMRNFGCNHNRSDSESMNGLLVEYGYEIVNELDDCDLIVINSCTVKSPSEMS 142
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
L+ + KK +VV GC+PQ R L L+ VS++GV R+VE+VE TL+G+ V +
Sbjct: 143 CRNLVETALNKKKFVVVTGCIPQAERTLPWLKNVSVLGVSYTHRIVEIVELTLQGNIVEM 202
Query: 174 LHRK------------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
+ +LP L+LPK+R+N VEI+ ++VGCLG CTYCKTK++R
Sbjct: 203 ISMNSDLSAIGTTKKQDKATFSRLPPLNLPKIRKNPLVEIITVSVGCLGNCTYCKTKYSR 262
Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
G+LGSYT+E+++ RV+T + +G+K++WL+SEDTGAYG+DIG NL L+ I+ +PPD
Sbjct: 263 GNLGSYTIETILNRVKTSLKEGIKQIWLTSEDTGAYGKDIGTNLSSLIYQILNIIPPD-- 320
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
M+RIGMTNPP+IL ++++ EVL HP V+ FLH+PVQSGS+ VL+
Sbjct: 321 VMIRIGMTNPPYILNQIQDMVEVLSHPNVFEFLHIPVQSGSNKVLT 366
>gi|119575831|gb|EAW55427.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
[Homo sapiens]
Length = 488
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 140/241 (58%), Positives = 183/241 (75%), Gaps = 9/241 (3%)
Query: 87 YALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG 146
+ +T+N+ +AD+WL+N+CTVK+P++ I K + K +V+AGCVPQ L+G
Sbjct: 22 HQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKG 81
Query: 147 VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPIN 199
+SI+GVQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+N +EI+ IN
Sbjct: 82 LSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISIN 141
Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL 259
GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGRDIG NL
Sbjct: 142 TGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNL 201
Query: 260 PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 319
P LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD+V
Sbjct: 202 PTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSV 259
Query: 320 L 320
L
Sbjct: 260 L 260
>gi|34535972|dbj|BAC87494.1| unnamed protein product [Homo sapiens]
Length = 487
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 140/241 (58%), Positives = 183/241 (75%), Gaps = 9/241 (3%)
Query: 87 YALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG 146
+ +T+N+ +AD+WL+N+CTVK+P++ I K + K +V+AGCVPQ L+G
Sbjct: 22 HQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKG 81
Query: 147 VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPIN 199
+SI+GVQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+N +EI+ IN
Sbjct: 82 LSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISIN 141
Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL 259
GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGRDIG NL
Sbjct: 142 TGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNL 201
Query: 260 PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 319
P LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD+V
Sbjct: 202 PTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSV 259
Query: 320 L 320
L
Sbjct: 260 L 260
>gi|84997025|ref|XP_953234.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65304230|emb|CAI76609.1| hypothetical protein, conserved [Theileria annulata]
Length = 750
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 135/276 (48%), Positives = 195/276 (70%), Gaps = 13/276 (4%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P IY+K FGCSHN SDSEYM G +S GY +T+N EE D+ +IN+CTVK+PS+ AM
Sbjct: 312 PSEVKIYLKNFGCSHNISDSEYMLGLISESGYTITENIEECDVVIINSCTVKNPSEHAMV 371
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSR----------DLKELEGVS-IVGVQQIDRVVEVVEE 164
I + K ++V GC+PQ + +++ L ++ VG+ QID+++ V+E
Sbjct: 372 NYINQGLKLNKRIIVTGCIPQSDKKHPVLSTSVTNVQFLNKLNNSVGIMQIDKIIYVIEN 431
Query: 165 TLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ G+ V LL +K LP+LDLPK+R+NK +EI+PI+ GCLG+CT+CKTKH+RG L SY +E
Sbjct: 432 VMNGNRVVLLEKKSLPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKHSRGVLNSYEIE 491
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
+++ RV + +++GVKE+WL+SED GAYG D+G N+ LL +I+ LP + MLR+GM N
Sbjct: 492 AILDRVESSVSEGVKEIWLTSEDLGAYGIDLGTNIITLLYSIINILPQN--IMLRLGMCN 549
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
PP+I +++ EI E+L H V+ F+H+PVQS SDAVL
Sbjct: 550 PPYIKKYINEICEILSHDNVFEFIHIPVQSCSDAVL 585
>gi|170579583|ref|XP_001894893.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Brugia malayi]
gi|158598345|gb|EDP36257.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Brugia malayi]
Length = 447
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 142/245 (57%), Positives = 191/245 (77%), Gaps = 3/245 (1%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
MAG LSA G+ LT+ E+A +W++N+CTVK+PS++ ++ ++ + + K ++VAGCV Q
Sbjct: 1 MAGLLSAAGHQLTNKKEDASLWILNSCTVKTPSETQLENMVREARKLNKFIIVAGCVSQA 60
Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVRRNKFVEIL 196
+L+ L+G+SIVGV+QI+ V + VEETLKG+ VR L R+K + L LPK+R+NKFVEIL
Sbjct: 61 EPNLRFLDGISIVGVKQIECVTQAVEETLKGNCVRFLSRRKQNSNLLLPKIRKNKFVEIL 120
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
I+ GCL CTYCKTK ARG+L SY ++SL+ R R ADG KE+WL+SED GA+GRDI
Sbjct: 121 AISSGCLNHCTYCKTKSARGNLVSYPLDSLLERARNAFADGCKELWLTSEDLGAWGRDID 180
Query: 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316
+ LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L+EI+E+L HP VYSFLH+PVQS S
Sbjct: 181 MVLPDLLNALV-EIIPEG-CMLRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSAS 238
Query: 317 DAVLS 321
DAVLS
Sbjct: 239 DAVLS 243
>gi|426351722|ref|XP_004043378.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like, partial [Gorilla gorilla
gorilla]
Length = 440
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 138/236 (58%), Positives = 179/236 (75%), Gaps = 9/236 (3%)
Query: 92 NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVG 151
N+ +AD+WL+N+CTVK+P++ I K + K +V+AGCVPQ L+G+SI+G
Sbjct: 1 NASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIG 60
Query: 152 VQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLG 204
VQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+N +EI+ IN GCL
Sbjct: 61 VQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLN 120
Query: 205 ACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLN 264
ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGRDIG NLP LL
Sbjct: 121 ACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLW 180
Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD++L
Sbjct: 181 KLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSIL 234
>gi|432908314|ref|XP_004077806.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Oryzias latipes]
Length = 494
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/239 (58%), Positives = 178/239 (74%), Gaps = 9/239 (3%)
Query: 89 LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVS 148
+ D+ EAD+WL+N+CTVK+P++ I K + K +VVAGCVPQ + L+ +S
Sbjct: 25 ILDDPAEADLWLLNSCTVKNPAEDHFRNSIKKAQEQDKKVVVAGCVPQAQPRMDYLKSLS 84
Query: 149 IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVG 201
I+GVQQIDRVVEVV+E +KGH VRLL +KK LDLPK+R+N +EI+ IN G
Sbjct: 85 IIGVQQIDRVVEVVDEAVKGHSVRLLGQKKEGGRRLGGARLDLPKIRKNPLIEIISINTG 144
Query: 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI 261
CL ACTYCKTKHARG L SY +E LV RVR +GV E+WL+SEDTGAYGRDIG +LP
Sbjct: 145 CLNACTYCKTKHARGDLASYPIEELVKRVRQSFQEGVCEIWLTSEDTGAYGRDIGTDLPT 204
Query: 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
LL +V ++ PDG+ MLR+GMTNPP+ILEHL E+A++L HP VY+FLHVPVQS SD+VL
Sbjct: 205 LLWRLVEQI-PDGA-MLRLGMTNPPYILEHLGEMAKILNHPRVYAFLHVPVQSASDSVL 261
>gi|323455423|gb|EGB11291.1| hypothetical protein AURANDRAFT_1140, partial [Aureococcus
anophagefferens]
Length = 446
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 144/279 (51%), Positives = 190/279 (68%), Gaps = 12/279 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN---SEEADIWLINTCTVKSPSQ 111
+P T+ +Y++TFGCSHN SDSEYM G L++ GY ++ + ++ AD W++N+CTVK PSQ
Sbjct: 3 LPETKRVYVRTFGCSHNVSDSEYMCGLLASEGYEVSTDRADADAADAWVVNSCTVKDPSQ 62
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDL---------KELEGVSIVGVQQIDRVVEVV 162
+A + + K +VV+GC+PQG R L EL+G S VG++QI RV E V
Sbjct: 63 AAFMKEVRRGMKDGKAVVVSGCIPQGERGLVKKQGGRKPPELDGASSVGIKQIGRVNEAV 122
Query: 163 EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
L+G L LP+L+LPKVR N VEI+P++ GCLGAC YCKT+HARG LGSY
Sbjct: 123 AAALRGETFHALGSGPLPSLELPKVRANALVEIVPLSSGCLGACAYCKTRHARGALGSYA 182
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
+ +V RV +ADGV EVWLSSEDTGAYG D+G +L LL A++ L MLR+GM
Sbjct: 183 LADIVARVDGALADGVGEVWLSSEDTGAYGIDLGTSLGALLEALLPVLEAHPHGMLRVGM 242
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
TNPP++L+ L+ + L H VY+FLHVPVQSGSDAVL+
Sbjct: 243 TNPPYVLDQLEVLGRCLNHAQVYAFLHVPVQSGSDAVLA 281
>gi|358334470|dbj|GAA52927.1| CDKAL1-like protein [Clonorchis sinensis]
Length = 659
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 164/382 (42%), Positives = 214/382 (56%), Gaps = 89/382 (23%)
Query: 29 VNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY- 87
V ++ + L D +++ IP ++++T+GC+HN SDSEYMAG L+ +GY
Sbjct: 22 VKVRFRTRRQNLADTDSDSVTTMA--IPEHYRVFVQTWGCAHNTSDSEYMAGLLAQYGYQ 79
Query: 88 ---------------ALTDNSE-----------------------------------EAD 97
A ++NSE EAD
Sbjct: 80 VILGGSTKDSHEPVSAQSNNSECECSSGLAGDCCQKQEDKGCCTMPGLLTADERAKQEAD 139
Query: 98 IWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDR 157
+W++N+CTVK P++ + K LVVAGCVPQ L+GVSI+GVQQIDR
Sbjct: 140 LWVLNSCTVKGPAEDHFRNAVKAGMRMGKRLVVAGCVPQSHPAADYLKGVSIIGVQQIDR 199
Query: 158 VVEVVEETLKGHEVRLL--------------HRKKL--PALDLPKVRRNKFVEILPINVG 201
VVEVVEETL+G+ VR L R++L LDLPK+RRN +EIL ++ G
Sbjct: 200 VVEVVEETLQGNTVRFLDKKWAVSGDGDSHSERRRLGGARLDLPKIRRNPLIEILAVSTG 259
Query: 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG----- 256
CL ACTYCKTKHARG L SY +E L+ R + ADGVKE+WL+SED GAYGRD+
Sbjct: 260 CLNACTYCKTKHARGVLASYPIEELLERAKQAFADGVKELWLTSEDLGAYGRDLDRTTSV 319
Query: 257 -------------VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 303
+ L LL+ +V L P+G MLR+GMTNPP+ILE L+EIA+VL HP
Sbjct: 320 YSCPSMAARFPQCLTLADLLSGLV-RLIPEGC-MLRLGMTNPPYILEQLREIADVLSHPR 377
Query: 304 VYSFLHVPVQSGSDAVLSVSQK 325
VY+FLHVPVQSGSDAVL ++
Sbjct: 378 VYAFLHVPVQSGSDAVLDCMKR 399
>gi|449681850|ref|XP_002155994.2| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Hydra magnipapillata]
Length = 474
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/232 (59%), Positives = 174/232 (75%), Gaps = 9/232 (3%)
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
AD+WL+N+CTVK+P++ + I K + K +V+AGCVPQG + ++G+SIVGVQQI
Sbjct: 8 ADLWLLNSCTVKNPAEESFKNEIKKAQELNKYVVLAGCVPQGQPRGEFMKGLSIVGVQQI 67
Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTY 208
DRVVEVVEETLKGH VRL +KKL L+LPK+R+N +EI+ IN GCL CTY
Sbjct: 68 DRVVEVVEETLKGHSVRLFGKKKLNGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNQCTY 127
Query: 209 CKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268
CKTKHARG LGSY E +V RV+ +GV E+WL+SEDTGAYG+DIGV LP LL I+
Sbjct: 128 CKTKHARGELGSYPPEEIVARVKQSFEEGVVEIWLTSEDTGAYGKDIGVTLPELLWQIIE 187
Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+PP G ++RIGMTNPP+I E+L E+A++L HP VYSFLH+PVQSGS+ VL
Sbjct: 188 VIPPGG--LMRIGMTNPPYIKEYLDEMAKILNHPRVYSFLHIPVQSGSNNVL 237
>gi|402582010|gb|EJW75956.1| hypothetical protein WUBG_13135, partial [Wuchereria bancrofti]
Length = 240
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 132/229 (57%), Positives = 179/229 (78%), Gaps = 3/229 (1%)
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
E+A +W++N+CTVK+PS++ ++ + + + K ++VAGCV Q +L+ L+G+SIVGV+
Sbjct: 1 EDASLWILNSCTVKTPSETQLENTVKEARKLNKFIIVAGCVSQAEPNLQFLDGISIVGVK 60
Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYCKTK 212
QI+ V + VEETLKG+ VR L R+K + L LPK+R+NKF+EIL I+ GCL CTYCKTK
Sbjct: 61 QIECVTQAVEETLKGNCVRFLSRRKPNSNLLLPKIRKNKFIEILAISTGCLNHCTYCKTK 120
Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272
ARG+L SY ++SL+ R R ADG KE+WL+SED GA+GRDI + LP LLNA+V E+ P
Sbjct: 121 SARGNLVSYPLDSLLERARNAFADGCKELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIP 179
Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+G MLR+GMTNPP+IL+ L+EI+E+L HP VYSFLH+PVQS SDAVLS
Sbjct: 180 EG-CMLRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSASDAVLS 227
>gi|340054214|emb|CCC48509.1| putative tRNA modification enzyme, fragment [Trypanosoma vivax
Y486]
Length = 514
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 137/298 (45%), Positives = 195/298 (65%), Gaps = 17/298 (5%)
Query: 40 LHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIW 99
+HD + + + + + + T + EYMAG L GY++TD E AD +
Sbjct: 10 MHDGDIEDILCNNATLNVSSSRIVNTLNTRQRRRLPEYMAGLLVQSGYSVTDEFEHADAY 69
Query: 100 LINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV 159
L+N+CTVK+PS+ +++ + + KPLVVAGCVPQ K+ VSI+GV+ IDRV
Sbjct: 70 LLNSCTVKNPSEEHFVSMMNRVRLTGKPLVVAGCVPQADPLNKQWSDVSIIGVRSIDRVC 129
Query: 160 EVVEETLKGHEVRLL----HRK------------KLPALDLPKVRRNKFVEILPINVGCL 203
VV E L+G+ VRL+ H++ LPALDLPKVR N+++EI+PI+VGCL
Sbjct: 130 YVVHEALQGNCVRLIGLSGHQEASDSGGRSRETDTLPALDLPKVRHNRYIEIIPISVGCL 189
Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILL 263
CTYCKTK ARG L SY +E +V RVR V+ +GVKE+ L+SED+GAYG DIG ++ LL
Sbjct: 190 NNCTYCKTKQARGDLRSYPIEKIVERVREVLREGVKEIRLTSEDSGAYGIDIGTDVVQLL 249
Query: 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
A+ AEL MLR+GM+NPP++L H+ ++A +L+HP +Y F+H+PVQSGS+ +L+
Sbjct: 250 RAVAAEL-SGKDVMLRVGMSNPPYLLRHVNDLAVLLKHPNIYEFVHIPVQSGSNRILN 306
>gi|256081446|ref|XP_002576981.1| radical sam proteins [Schistosoma mansoni]
gi|350644302|emb|CCD60954.1| radical sam proteins, putative [Schistosoma mansoni]
Length = 810
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 199/373 (53%), Gaps = 79/373 (21%)
Query: 25 NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA 84
+ V V ++ KP ++S+ LS +P ++++T+GC+HN SDSEYM G L
Sbjct: 17 STVLVKTRFRNKKP-----NISEDLCLSSNLPEKFHVFVQTWGCAHNTSDSEYMTGLLVK 71
Query: 85 FGYALT--------------------------------------------------DNSE 94
+GY +T D +
Sbjct: 72 YGYRVTLDGSQITNGCESEANISSTSDFACGCQDNGDQCCSKEKNSDKGNVVLSNCDAKK 131
Query: 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQ 154
AD+W++N+CTVK P++ + + K +V +GCVPQ L+GVS++GV Q
Sbjct: 132 NADVWVLNSCTVKGPAEDHFRNAVLEGIKLGKRVVASGCVPQSRPGADYLKGVSVIGVHQ 191
Query: 155 IDRVVEVVEETLKGHEVRLLHRKKLP----ALDLPKVRRNKFVEILPINVGCLGACTYCK 210
IDR+VEVVEETL+ H ALDLPK+RRN +EIL I+ GCL ACTYCK
Sbjct: 192 IDRIVEVVEETLQESSSSATHSSSSSLAGIALDLPKIRRNPLIEILAISTGCLNACTYCK 251
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------------- 256
TK ARG L SY +E L+ R + +GVKE+WL+SED GAYGRD+
Sbjct: 252 TKQARGILASYPIEQLLDRAKQAFKEGVKELWLTSEDLGAYGRDLDRTTSSLICPGLSEK 311
Query: 257 ----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV 312
+ L LL +V +P MLR+GMTNPP+IL+ L EIAEVL HP VYSFLH+PV
Sbjct: 312 WSHHITLADLLAGLVPIIP--AGCMLRLGMTNPPYILDQLVEIAEVLSHPRVYSFLHIPV 369
Query: 313 QSGSDAVLSVSQK 325
QSGSDAVL ++
Sbjct: 370 QSGSDAVLDAMKR 382
>gi|90083062|dbj|BAE90613.1| unnamed protein product [Macaca fascicularis]
Length = 464
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 128/217 (58%), Positives = 160/217 (73%), Gaps = 9/217 (4%)
Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
Q I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH
Sbjct: 4 QDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHS 63
Query: 171 VRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
VRLL +KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY +
Sbjct: 64 VRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPI 123
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ LV R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMT
Sbjct: 124 DELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMT 181
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
NPP+ILEHL+E+A++L HP VY+FLH+PVQ SD+VL
Sbjct: 182 NPPYILEHLEEMAKILNHPRVYAFLHIPVQPASDSVL 218
>gi|326917127|ref|XP_003204853.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
1-like, partial [Meleagris gallopavo]
Length = 327
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 128/208 (61%), Positives = 157/208 (75%), Gaps = 9/208 (4%)
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K A K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 1 KAHEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKD 60
Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R +
Sbjct: 61 NGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRAKQ 120
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+WL+SEDTGAYGRDIG +LP LL +V E P+G+ MLR+GMTNPP+ILEHL
Sbjct: 121 SFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPYILEHL 178
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 179 EEMAKILNHPRVYAFLHIPVQSASDSVL 206
>gi|300122464|emb|CBK23034.2| unnamed protein product [Blastocystis hominis]
Length = 465
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 122/267 (45%), Positives = 176/267 (65%), Gaps = 3/267 (1%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P +T+Y+ TFGCSHN SD E M G L+ GY +T EEAD+W+INTCTV+ S +
Sbjct: 33 PDAKTVYVHTFGCSHNISDGETMKGVLAQGGYNITSKKEEADVWVINTCTVRDKSIQSFR 92
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TL + K K LVVAGC+ + L E + +GV+QI ++ E V+ +
Sbjct: 93 TLYNEAKKTGKKLVVAGCMLEADPSLSSEFHADATLGVRQIAQIKETVDSLFFPPTHHFV 152
Query: 175 H-RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
++P+L LPK+R+++ VEI+PI++GCLGACT+C+T+ ARG L SY ++ ++ RV
Sbjct: 153 SPSDEIPSLQLPKIRKDEGVEIIPISLGCLGACTFCQTRLARGKLWSYPIDEIIKRVHAA 212
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+G+ E+WL+SEDTGAYG D +L LL+ I +E+ D + M++IGMTNPPF+ L+
Sbjct: 213 KVNGISEIWLTSEDTGAYGMDRNSSLMELLDRIRSEV-EDSNVMVKIGMTNPPFLKPMLE 271
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++ +L H YS+LH+PVQSGSDAVL
Sbjct: 272 PLSTILNHKNFYSYLHIPVQSGSDAVL 298
>gi|345312696|ref|XP_001514441.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1,
partial [Ornithorhynchus anatinus]
Length = 448
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/208 (59%), Positives = 158/208 (75%), Gaps = 9/208 (4%)
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K + K +V+AGCVPQ ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 1 KAQEEDKKVVLAGCVPQAQPRQDYMKGLSIIGVQQIDRVVEVVEETVKGHSVRLLGQKKD 60
Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 61 NGKRMGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQ 120
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL
Sbjct: 121 SFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHL 178
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ +A++L HP VY+FLH+PVQS SD+VL
Sbjct: 179 EAMAKILSHPRVYAFLHIPVQSASDSVL 206
>gi|82915234|ref|XP_729019.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485813|gb|EAA20584.1| Drosophila melanogaster GH28477p-related [Plasmodium yoelii yoelii]
Length = 817
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 16/258 (6%)
Query: 67 GCSHN--QSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
GC+ N +SD + AG + +L N + + IN +K + S D
Sbjct: 405 GCATNNDKSDPKTKAGCCNGENESLVSNVKNK-VEGINNEIIKKRTNSGKDI-------- 455
Query: 125 KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPALD 183
++V GCVPQ D+K E VS+VGV ID++V+ VE + G+ V+ L + KK+ +L+
Sbjct: 456 --KIIVCGCVPQAENDMKIFENVSLVGVNNIDKIVDAVENVINGYNVKYLKQSKKMTSLN 513
Query: 184 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVW 242
LPK+R+NKF+EI+ IN GCLG CTYCKTK ARG+L SY ++ +V R++ V D +KE+W
Sbjct: 514 LPKIRKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIKDIVNRIKHVYTKDNIKEIW 573
Query: 243 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 302
L+SED+GAYG D+ N+ LL I+ E D M+RIGMTNPP+IL+H+K+I ++L+H
Sbjct: 574 LTSEDSGAYGIDLNTNIVNLLKEIL-EYVQDTDVMIRIGMTNPPYILKHVKDICKLLKHK 632
Query: 303 CVYSFLHVPVQSGSDAVL 320
+Y F+H+PVQSGS+ VL
Sbjct: 633 NMYEFIHIPVQSGSNNVL 650
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P IY K+FGC+HN SDSE+M G LS +G+ N E+ DI ++N+CTVK+PS+ +M
Sbjct: 248 PENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFKFVKNIEDCDICIVNSCTVKNPSEESMK 307
Query: 116 TLI 118
T+I
Sbjct: 308 TII 310
>gi|110773695|ref|XP_396696.3| PREDICTED: CDKAL1-like protein-like [Apis mellifera]
Length = 264
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 120/209 (57%), Positives = 150/209 (71%), Gaps = 10/209 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KT+GC+HN SDSEYMAGQL+A+GY LT+N +AD+WL+N+CTVKSP++
Sbjct: 56 IPGTQTIYVKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYKADLWLLNSCTVKSPAEDHF 115
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGKKIGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E L+
Sbjct: 176 QQKKEAGKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEELL 235
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
V+T ++ +WL + YGRDIG
Sbjct: 236 -IVQTAFRKRLR-LWLHPK-IQDYGRDIG 261
>gi|68068881|ref|XP_676351.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56496008|emb|CAH98348.1| conserved hypothetical protein [Plasmodium berghei]
Length = 784
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 145/196 (73%), Gaps = 3/196 (1%)
Query: 127 PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPALDLP 185
++V GCVPQ D+K E VS+VGV ID++V+ VE + G+ V+ L + KK+ +L+LP
Sbjct: 423 KIIVCGCVPQAENDMKIFENVSLVGVNNIDKIVDAVENVINGYNVKYLKQSKKMTSLNLP 482
Query: 186 KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLS 244
K+R+NKF+EI+ IN GCLG CTYCKTK ARG+L SY ++ +V R++ V D +KE+WL+
Sbjct: 483 KIRKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIKDIVSRIKYVCTKDNIKEIWLT 542
Query: 245 SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304
SED+GAYG D+ N+ LL I+ + D M+RIGMTNPP+IL+H+K+I ++L+H +
Sbjct: 543 SEDSGAYGIDLNTNIVNLLKEIL-DYVQDTDVMIRIGMTNPPYILKHVKDICKLLKHKNM 601
Query: 305 YSFLHVPVQSGSDAVL 320
Y F+H+PVQSGS+ VL
Sbjct: 602 YEFIHIPVQSGSNNVL 617
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP IY K+FGC+HN SDSE+M G LS +G+ N ++ DI ++N+CTVK+PS+ +M
Sbjct: 216 IPENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFQFVKNIDDCDICIVNSCTVKNPSEESM 275
Query: 115 DTLI 118
T+I
Sbjct: 276 KTII 279
>gi|71996771|ref|NP_740783.2| Protein Y92H12BL.1 [Caenorhabditis elegans]
gi|75017352|sp|Q8MXQ7.2|CDKAL_CAEEL RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDKAL1-like
protein; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|373220306|emb|CCD72949.1| Protein Y92H12BL.1 [Caenorhabditis elegans]
Length = 425
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/194 (60%), Positives = 150/194 (77%), Gaps = 4/194 (2%)
Query: 130 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVR 188
+AGCV Q + L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R + A L LPK+R
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDAVLSLPKMR 60
Query: 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSED 247
+N+ +E+L I+ GCL CTYCKTK ARG L SY + LV + R D GVKE+WL+SED
Sbjct: 61 KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHDEGVKELWLTSED 120
Query: 248 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307
GA+GRDIG+ LP LL +V ++ PDGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLRELV-KVIPDGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178
Query: 308 LHVPVQSGSDAVLS 321
LH+PVQS SDAVL+
Sbjct: 179 LHIPVQSASDAVLN 192
>gi|341883251|gb|EGT39186.1| hypothetical protein CAEBREN_03885 [Caenorhabditis brenneri]
Length = 432
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/194 (60%), Positives = 149/194 (76%), Gaps = 4/194 (2%)
Query: 130 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR 188
+AGCV Q + L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R + AL LPK+R
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDALLSLPKMR 60
Query: 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI-ADGVKEVWLSSED 247
+N+ +E+L I+ GCL CTYCKTK ARG L SY + LV + R +GVKE+WL+SED
Sbjct: 61 KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHEEGVKELWLTSED 120
Query: 248 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307
GA+GRDIG+ LP LL +V +P DGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLKELVKVIP-DGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178
Query: 308 LHVPVQSGSDAVLS 321
LH+PVQS SDAVL+
Sbjct: 179 LHIPVQSASDAVLT 192
>gi|221057894|ref|XP_002261455.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
gi|194247460|emb|CAQ40860.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
Length = 750
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 105/223 (47%), Positives = 154/223 (69%), Gaps = 3/223 (1%)
Query: 100 LINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV 159
L+ +VK + + IAK ++V GCVPQ +D++ E VS+VGV ID++V
Sbjct: 362 LVKRASVKQMEKEGVKGAIAKAPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVTNIDKIV 421
Query: 160 EVVEETLKGHEVRLL-HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
+VVE + G+ VR L H KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK ARG L
Sbjct: 422 DVVENVINGYNVRYLKHSKKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDL 481
Query: 219 GSYTVESLVGRVRTVI-ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 277
SY + ++ R++ V + +KE+WL+SEDTGAYG D+ N+ LL I+ + + M
Sbjct: 482 ASYNIPDIINRIKHVCNEENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTI-SNSDVM 540
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+R+GMTNPP+IL+H+K+I +L+H +Y F+H+PVQSGS+ VL
Sbjct: 541 IRLGMTNPPYILKHIKDICNLLKHKNMYEFIHIPVQSGSNRVL 583
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+P IY K+FGC+HN SDSE+M G L +G+ + EE DI +IN+CTVK+PS+ +M
Sbjct: 208 LPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESM 267
Query: 115 DTLI 118
T+I
Sbjct: 268 KTII 271
>gi|167379627|ref|XP_001735214.1| radical sam proteins [Entamoeba dispar SAW760]
gi|165902883|gb|EDR28592.1| radical sam proteins, putative [Entamoeba dispar SAW760]
Length = 438
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 122/272 (44%), Positives = 166/272 (61%), Gaps = 10/272 (3%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE-----EADIWLINTCTVKSPSQSAM 114
TI T+GCSHN SDSE M L GY + D+SE + +IN+CTVK+PSQ A+
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKI-DSSETPISSKYKAVVINSCTVKNPSQQAI 67
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
+ + KC+ A PLV+AGCVPQ + + + SIVGV Q+ ++ E VE+
Sbjct: 68 EVVQKKCEEANVPLVIAGCVPQADPKACQCSKKCSIVGVDQLHKITEAVEKATHNEGQSY 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L R L +D VR N ++++ GC AC+YCKTKHARG L SY +E LV RV+
Sbjct: 128 LERGALVNID-EHVRSNPLIDVIVTCTGCENACSYCKTKHARGGLRSYPIEDLVKRVQHS 186
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I +GVKE+ L+ ED GAYG DI P +L I + +G MLRIGM NPP+I+++ K
Sbjct: 187 IDEGVKEIRLTGEDIGAYGLDINETFPHMLECICEVV--EGKAMLRIGMVNPPYIIKYFK 244
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
EI +L PC + FLH+P+QSGS +VL ++
Sbjct: 245 EIVNILLRPCCFKFLHIPIQSGSSSVLEAMKR 276
>gi|67462443|ref|XP_647883.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
HM-1:IMSS]
gi|56463504|gb|EAL42497.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
HM-1:IMSS]
Length = 438
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 121/271 (44%), Positives = 162/271 (59%), Gaps = 8/271 (2%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS----EEADIWLINTCTVKSPSQSAMD 115
TI T+GCSHN SDSE M L GY + +S + +IN+CTVK+PSQ A+D
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68
Query: 116 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ KC+ A PLV+AGCVPQ + + SIVGV Q+ ++ E VE+ L
Sbjct: 69 VVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
R L +D VR N ++I+ GC AC+YCKTKHARG L SY +E LV RV+ +
Sbjct: 129 ERGALVDID-DHVRSNPLIDIIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQSV 187
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GVKE+ L+ ED GAYG DI P +L I + DG MLRIGM NPP+I+++ E
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYFNE 245
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
I +L PC + FLH+P+QSGS +VL ++
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSTSVLDAMKR 276
>gi|449705503|gb|EMD45533.1| RNA modification enzymes MiaBfamily protein [Entamoeba histolytica
KU27]
Length = 438
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 162/271 (59%), Gaps = 8/271 (2%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS----EEADIWLINTCTVKSPSQSAMD 115
TI T+GCSHN SDSE M L GY + +S + +IN+CTVK+PSQ A+D
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68
Query: 116 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ KC+ A PLV+AGCVPQ + + SIVGV Q+ ++ E VE+ L
Sbjct: 69 VVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
R L +D VR N ++I+ GC AC+YCKTKHARG L SY +E LV RV+ +
Sbjct: 129 ERGALVDID-DHVRSNPLIDIIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQSV 187
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GVKE+ L+ ED GAYG DI P +L I + DG MLRIGM NPP+I+++ E
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYFNE 245
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
I +L PC + FLH+P+QSGS ++L ++
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSTSILDAMKR 276
>gi|407043368|gb|EKE41912.1| MiaB family tRNA modifying enzyme, archaeal-type protein [Entamoeba
nuttalli P19]
Length = 438
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 162/271 (59%), Gaps = 8/271 (2%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS----EEADIWLINTCTVKSPSQSAMD 115
TI T+GCSHN SDSE M L GY + +S + +IN+CTVK+PSQ A+D
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68
Query: 116 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ KC+ A PLV+AGCVPQ + + SIVGV Q+ ++ E VE+ L
Sbjct: 69 VVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
R L +D VR N ++++ GC AC+YCKTKHARG L SY +E LV RV+ +
Sbjct: 129 ERGALVDID-DHVRSNPLIDVIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQSV 187
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GVKE+ L+ ED GAYG DI P +L I + DG MLRIGM NPP+I+++ E
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYFDE 245
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
I +L PC + FLH+P+QSGS +VL ++
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSTSVLDAMKR 276
>gi|389584604|dbj|GAB67336.1| tRNA modifying enzyme, partial [Plasmodium cynomolgi strain B]
Length = 768
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/228 (45%), Positives = 155/228 (67%), Gaps = 3/228 (1%)
Query: 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQ 154
+ D L+ VK + A+ A ++V GCVPQ +D++ E VS+VGV
Sbjct: 375 KGDSGLVKREAVKKTEKEAVKGAAATAPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVSN 434
Query: 155 IDRVVEVVEETLKGHEVRLLHR-KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213
ID++V+VVE + G+ VR L + KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK
Sbjct: 435 IDKIVDVVENVINGYNVRYLKQGKKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKF 494
Query: 214 ARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272
ARG L SY + ++ R++ V + + +KE+WL+SEDTGAYG D+ N+ LL I+ +
Sbjct: 495 ARGDLASYNIPDIINRIKHVCSEENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTI-S 553
Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ M+R+GMTNPP+IL+H+K+I +L+H +Y F+H+PVQSGS+ VL
Sbjct: 554 NSDVMIRLGMTNPPYILKHVKDICNLLKHKNMYEFIHIPVQSGSNRVL 601
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+P IY K+FGC+HN SDSE+M G L +G+ + EE DI +IN+CTVK+PS+ +M
Sbjct: 229 LPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESM 288
Query: 115 DTLI 118
T+I
Sbjct: 289 KTII 292
>gi|156101079|ref|XP_001616233.1| tRNA modifying enzyme [Plasmodium vivax Sal-1]
gi|148805107|gb|EDL46506.1| tRNA modifying enzyme, putative [Plasmodium vivax]
Length = 799
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 149/205 (72%), Gaps = 8/205 (3%)
Query: 123 SAKKP-----LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR- 176
SAK P ++V GCVPQ +D++ E VS+VGV ID++V+VVE + G+ VR L +
Sbjct: 429 SAKPPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVTNIDKIVDVVENVINGYNVRYLKQA 488
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA- 235
KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK ARG L SY + ++ R++ V +
Sbjct: 489 KKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDLASYNIPDIINRIKHVCSE 548
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+ +KE+WL+SEDTGAYG D+ N+ LL I+ + + M+R+GMTNPP+IL+H+K+I
Sbjct: 549 ENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTI-SNSDVMIRLGMTNPPYILKHVKDI 607
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVL 320
+L+H +Y F+H+PVQSGS+ VL
Sbjct: 608 CNLLKHKNMYEFIHIPVQSGSNRVL 632
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+P IY K+FGC+HN SDSE+M G L +G+ + EE DI +IN+CTVK+PS+ +M
Sbjct: 252 LPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESM 311
Query: 115 DTLI 118
T+I
Sbjct: 312 KTII 315
>gi|86171407|ref|XP_966205.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
gi|46361171|emb|CAG25035.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
Length = 860
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 97/195 (49%), Positives = 141/195 (72%), Gaps = 3/195 (1%)
Query: 128 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH-RKKLPALDLPK 186
++V GCVPQ +D++ E VS+VGV ID++V+VVE + G+ V+ L KK+ +L+LPK
Sbjct: 499 IIVCGCVPQAEKDMEIFENVSLVGVNNIDKIVDVVENVINGYNVQYLKTSKKMTSLNLPK 558
Query: 187 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI-ADGVKEVWLSS 245
+R+NK++EI+ IN GCLG CTYCKTK ARG L SY + + R+ V + +KE+WL+S
Sbjct: 559 IRKNKYIEIININNGCLGNCTYCKTKFARGDLSSYNIRDITDRITYVCNEENIKEIWLTS 618
Query: 246 EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 305
EDTGAYG DI ++ LL I+ + + M+R+GMTNPP+IL+H+K+I +L+H +Y
Sbjct: 619 EDTGAYGIDINTDIVNLLKNILKSVEH-TNVMIRLGMTNPPYILKHIKDICTLLKHKNMY 677
Query: 306 SFLHVPVQSGSDAVL 320
F+H+PVQSGS+ VL
Sbjct: 678 EFIHIPVQSGSNNVL 692
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+P IY K+FGC+HN SDSE+M G L+ +G+ EE DI ++N+CTVK+PS+ +M
Sbjct: 239 LPENYKIYFKSFGCAHNSSDSEFMMGLLANYGFKFVKKIEECDICIVNSCTVKNPSEESM 298
Query: 115 DTLIAKCK 122
T+I K
Sbjct: 299 KTIINYVK 306
>gi|221488386|gb|EEE26600.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
GT1]
Length = 867
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/187 (56%), Positives = 137/187 (73%), Gaps = 5/187 (2%)
Query: 137 GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEIL 196
G RDL +L SIVGV IDR+VE VEE LKG+ +RL +++LP+LDLPK+RRN VEI+
Sbjct: 510 GQRDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKRRLPSLDLPKIRRNNLVEIV 567
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
PI+ GCLG+CTYCKTKHARG LGSY E++ RV + +GVK++WL+SED+GAYG D
Sbjct: 568 PISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEGVKQIWLTSEDSGAYGLDRQ 627
Query: 257 VNLPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
+L LL + V + D S MLR+GM+NPPF+L+ LK +V HP V+ FLH+P+Q
Sbjct: 628 SSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQQLKSAVQVFSHPNVFEFLHLPLQ 687
Query: 314 SGSDAVL 320
SGS+ VL
Sbjct: 688 SGSNDVL 694
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ I++KTFGC+HNQSDSEYM G L A GY E+AD+ LIN+CTVKSPS+ A+ ++I
Sbjct: 279 QRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINSCTVKSPSEFALYSVI 338
>gi|237833257|ref|XP_002365926.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
gi|211963590|gb|EEA98785.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
gi|221508888|gb|EEE34457.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
VEG]
Length = 867
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/187 (56%), Positives = 137/187 (73%), Gaps = 5/187 (2%)
Query: 137 GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEIL 196
G RDL +L SIVGV IDR+VE VEE LKG+ +RL +++LP+LDLPK+RRN VEI+
Sbjct: 510 GQRDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKRRLPSLDLPKIRRNNLVEIV 567
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
PI+ GCLG+CTYCKTKHARG LGSY E++ RV + +GVK++WL+SED+GAYG D
Sbjct: 568 PISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEGVKQIWLTSEDSGAYGLDRQ 627
Query: 257 VNLPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
+L LL + V + D S MLR+GM+NPPF+L+ LK +V HP V+ FLH+P+Q
Sbjct: 628 SSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQQLKSAVQVFSHPNVFEFLHLPLQ 687
Query: 314 SGSDAVL 320
SGS+ VL
Sbjct: 688 SGSNDVL 694
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ I++KTFGC+HNQSDSEYM G L A GY E+AD+ LIN+CTVKSPS+ A+ ++I
Sbjct: 279 QRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINSCTVKSPSEFALYSVI 338
>gi|401408469|ref|XP_003883683.1| putative radical SAM domain-containing protein [Neospora caninum
Liverpool]
gi|325118100|emb|CBZ53651.1| putative radical SAM domain-containing protein [Neospora caninum
Liverpool]
Length = 863
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 105/185 (56%), Positives = 136/185 (73%), Gaps = 5/185 (2%)
Query: 139 RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPI 198
RDL +L SIVGV IDR+VE VEE LKG+ +RL +K+LP+LDLPK+RRN VEI+PI
Sbjct: 508 RDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKKRLPSLDLPKIRRNALVEIVPI 565
Query: 199 NVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN 258
+ GCLG+CTYCKTKHARG LGSY E++ R+ + DGVK++WL+SED+GAYG D +
Sbjct: 566 STGCLGSCTYCKTKHARGELGSYPEEAIETRIEASLLDGVKQIWLTSEDSGAYGLDRQSS 625
Query: 259 LPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 315
L LL + V + D S MLR+GM+NPPF+L+ LK +V HP V+ FLH+P+QSG
Sbjct: 626 LTSLLARLLRNVFDRRADPSLMLRVGMSNPPFLLQQLKSAVQVFAHPNVFEFLHLPLQSG 685
Query: 316 SDAVL 320
S+ VL
Sbjct: 686 SNDVL 690
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 56 PGTET-IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
PG + IY+KTFGC+HNQSDSEYM G L A GY EEAD+ LIN+CTVKSPS+ A+
Sbjct: 268 PGKQQKIYVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEEADVCLINSCTVKSPSEFAL 327
Query: 115 DTLI 118
++I
Sbjct: 328 YSVI 331
>gi|313217015|emb|CBY38208.1| unnamed protein product [Oikopleura dioica]
Length = 1477
Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats.
Identities = 104/168 (61%), Positives = 123/168 (73%), Gaps = 9/168 (5%)
Query: 161 VVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213
VVEETLKG+ V+LL KK L LPKVRRN +EI+ IN GCL +CTYCKTKH
Sbjct: 15 VVEETLKGNTVKLLGPKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKH 74
Query: 214 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273
ARG L SY ++ +V R G+ EVWL+SEDTGAYGRDIG N+ LLNA+V +P
Sbjct: 75 ARGDLASYPIDEIVARFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE- 133
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
M+RIGMTNPP+ILEHL+ IA++L HP VYSFLHVPVQSGSDAVL+
Sbjct: 134 -GCMMRIGMTNPPYILEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLN 180
>gi|18978284|ref|NP_579641.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
gi|397652439|ref|YP_006493020.1| 2-methylthioadenine synthetase [Pyrococcus furiosus COM1]
gi|18894107|gb|AAL82036.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
gi|393190030|gb|AFN04728.1| 2-methylthioadenine synthetase [Pyrococcus furiosus COM1]
Length = 425
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/263 (40%), Positives = 158/263 (60%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N++D E MAG L + GY + + E ADI ++N+C VK P++ + I +
Sbjct: 4 VYIENYGCARNRADGEIMAGLLLSSGYEIVEGEENADIVVVNSCAVKDPTEVKIARRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
K ++V GC+P + D + +++GV+ IDR+V+ VE L+G + V ++
Sbjct: 64 LLDRGKKVIVTGCLPHVNPDAIDERVSAVLGVKSIDRIVQAVEYALRGEKLISVPDWRKR 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LD P++ ILPI GCL CTYC T+ ARG L SY+ E +V V+ I G
Sbjct: 124 NLDKLDFPRLSPRGVHFILPIAEGCLNGCTYCATRSARGVLKSYSPEKIVEWVKWAIRQG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRIRVGMMNPNHVLKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ VY FLH+PVQSG + +L
Sbjct: 241 AYKDEKVYKFLHLPVQSGDNEIL 263
>gi|302809011|ref|XP_002986199.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
gi|300146058|gb|EFJ12730.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
Length = 686
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/233 (51%), Positives = 145/233 (62%), Gaps = 35/233 (15%)
Query: 88 ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGV 147
A++D+ + AD+WLINTCTVK+P+ M TLI K K+A PLV + G + +
Sbjct: 2 AISDSPQRADLWLINTCTVKAPT---MGTLIRKGKAASIPLVDSWMRSSGFKRSR----- 53
Query: 148 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
Q+ V ETLKGHE RLL R LP+LDLPKVR+NKFVEI+PINVGCLGACT
Sbjct: 54 ---SCQRHRSAVNTAGETLKGHEARLLRRDALPSLDLPKVRKNKFVEIIPINVGCLGACT 110
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
YCKTKHARGHLGSYTV++ V R++TV+++ GRDIG N+P LL A+V
Sbjct: 111 YCKTKHARGHLGSYTVDTPVQRLKTVVSE---------------GRDIGANIPALLRALV 155
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
A LP N P + HL HPCVYSFLHV VQSG D+VL
Sbjct: 156 AVLP-------HRQKYNAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVL 199
>gi|14917063|sp|O59545.2|AMTAB_PYRHO RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
Length = 425
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 161/263 (61%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N++D E MA L G+ + ++ EE++I ++N+C VK P++ + I +
Sbjct: 4 VYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
K ++V GC+P + D+ + +I+GV+ IDR+V+ VE ++G + V ++
Sbjct: 64 LLDNGKKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPDWKKR 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LD P++ ILPI GCL ACTYC T+ ARG L SY+ E ++G V+ I G
Sbjct: 124 NLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIKQG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL L++ I A +G +R+GM NP +L+ L E+ +
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLIDEITA---IEGEFRIRVGMMNPNHVLKFLDELID 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ VY FLH+PVQSG + +L
Sbjct: 241 AYKDEKVYKFLHLPVQSGDNEIL 263
>gi|14591622|ref|NP_143704.1| hypothetical protein PH1875 [Pyrococcus horikoshii OT3]
gi|3258314|dbj|BAA30997.1| 432aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 432
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 161/263 (61%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N++D E MA L G+ + ++ EE++I ++N+C VK P++ + I +
Sbjct: 11 VYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIRE 70
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
K ++V GC+P + D+ + +I+GV+ IDR+V+ VE ++G + V ++
Sbjct: 71 LLDNGKKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPDWKKR 130
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LD P++ ILPI GCL ACTYC T+ ARG L SY+ E ++G V+ I G
Sbjct: 131 NLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIKQG 190
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL L++ I A +G +R+GM NP +L+ L E+ +
Sbjct: 191 YKEIWLSAEDTGCYGFDIGTNLAKLIDEITA---IEGEFRIRVGMMNPNHVLKFLDELID 247
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ VY FLH+PVQSG + +L
Sbjct: 248 AYKDEKVYKFLHLPVQSGDNEIL 270
>gi|14521928|ref|NP_127405.1| hypothetical protein PAB1134 [Pyrococcus abyssi GE5]
gi|14916852|sp|Q9UXX9.1|AMTAB_PYRAB RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|5459148|emb|CAB50634.1| Hypothetical protein, UPF0004 family [Pyrococcus abyssi GE5]
gi|380742568|tpe|CCE71202.1| TPA: 2-methylthioadenine synthetase [Pyrococcus abyssi GE5]
Length = 425
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 159/263 (60%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++ +GC+ N++D E MA L G+ + + +E +I ++N+C VK P++ + I +
Sbjct: 4 IYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++V GC+P + D+ + I+GV+ IDR+++ VE L+G + V ++
Sbjct: 64 LLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPDWRKR 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LD P++ I+PI GCL ACTYC T+ ARG L SY+ E +VG V+ I G
Sbjct: 124 NLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRVRVGMMNPNHVLKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH+PVQSG + +L
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNDIL 263
>gi|407465270|ref|YP_006776152.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus sp. AR2]
gi|407048458|gb|AFS83210.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus sp. AR2]
Length = 422
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 168/263 (63%), Gaps = 7/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G+ LTDNSEE+D+ ++ TC+VK + + M I
Sbjct: 4 IFVEAYGCSASFADSEMISGLILNGGHTLTDNSEESDLNIVVTCSVKDSTANKMMYRINS 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
KS KPL+VAGC+P+ ++ E E S++G + + ++V+ TL G + L
Sbjct: 64 LKS--KPLIVAGCLPKAEKETVEKFSENASLLGPNSLGKTLQVINTTLGGQKQVALEDSD 121
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L + LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +V+T I +G
Sbjct: 122 LSKVGLPKVRLNPSVGIVEIASGCMSECTFCQTKLSKGDLSSYRLGDIVRQVQTEIKEGC 181
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KEVWL+S D G YG DIG +LP L+NA V+E+P D M+R+GM NP ++ +++ +
Sbjct: 182 KEVWLTSTDNGCYGFDIGTDLPTLINA-VSEIPED--FMIRVGMMNPMYMPRIKEKLIDS 238
Query: 299 LRHPCVYSFLHVPVQSGSDAVLS 321
+ V+ FLH+PVQSGSD VL+
Sbjct: 239 YDNDKVFKFLHIPVQSGSDKVLN 261
>gi|440300691|gb|ELP93138.1| radical sam protein, putative [Entamoeba invadens IP1]
Length = 441
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/266 (42%), Positives = 164/266 (61%), Gaps = 8/266 (3%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYAL--TDNSEEADIW--LINTCTVKSPSQSAMDTLIAK 120
TFGCSHN SDSE M L+ GY L D+ E + ++N+CTVK+PSQ +++ + K
Sbjct: 16 TFGCSHNVSDSEVMQKDLTEAGYILDKADSPLEGNYTAVVVNSCTVKNPSQQSIEQIKKK 75
Query: 121 CKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
C+ P+V+AGCVPQ + K + SIVGV Q+ ++ + VE ++G L R L
Sbjct: 76 CEEMHIPVVLAGCVPQADPKVFKCSKNCSIVGVDQLHKIKDAVESAVRGEGATYLERGPL 135
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
+D + + + ++I+ GC ACTYCKTKHARG L SY + ++ R++ I +GVK
Sbjct: 136 VDIDSYE-KSSPLIDIIVTCTGCENACTYCKTKHARGGLRSYPIIDIIKRIKKSINEGVK 194
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ L+ ED GAYG DIG P +L + + +G M+RIGM NPP+I+++ EI EV
Sbjct: 195 ELRLTGEDIGAYGMDIGDTFPHMLKEMCDVV--EGKAMIRIGMVNPPYIIKYFDEIVEVF 252
Query: 300 RHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ CVY F+H+P+QSGS VL ++
Sbjct: 253 KRKCVYKFIHIPIQSGSTQVLEAMKR 278
>gi|407462932|ref|YP_006774249.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046554|gb|AFS81307.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus
koreensis AR1]
Length = 422
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/263 (41%), Positives = 171/263 (65%), Gaps = 9/263 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++++GCS + +DSE ++G + G+ L ++SEE+D+ ++ TC+VK + + M I +
Sbjct: 4 IFVESYGCSASFADSEMISGLILNGGHTLVEDSEESDLNIVVTCSVKDATANKM---IHR 60
Query: 121 CKSAK-KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
KS K KPLVVAGC+P+ ++ E E S++G + + ++V++ TL+G + L
Sbjct: 61 IKSLKTKPLVVAGCLPKAEKETVERFSENASLLGPNSLGKTLQVIDSTLQGRKEIALEDS 120
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L + LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +V+T I +G
Sbjct: 121 DLSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKISKGDLQSYRLGDIVRQVKTEIDEG 180
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WL+S D G YG DIG +LP L+NA V+E+P D M+R+GM NP ++ +++ E
Sbjct: 181 CKEIWLTSTDNGCYGLDIGTDLPALINA-VSEIPED--FMVRVGMMNPMYMPRIKEKLIE 237
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ V+ FLH+PVQSGSD VL
Sbjct: 238 SYENDKVFKFLHIPVQSGSDKVL 260
>gi|332158106|ref|YP_004423385.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
gi|331033569|gb|AEC51381.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
Length = 429
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 160/263 (60%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N++D E MA L G+ + + +E++I ++N+C VK P++ + I +
Sbjct: 8 VYIENYGCARNRADGEIMAALLHLAGHEIVYDLDESEIVIVNSCAVKDPTERKIARRIRE 67
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
K ++V GC+P + ++ + +++GV+ IDR+V+ VE ++G + V ++
Sbjct: 68 LLDEGKKVIVTGCLPHVNPEVIDERVSAVLGVKSIDRIVQAVEYAIRGEKLISVPDWRKR 127
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LDLP++ I+PI GCL ACTYC T+ ARG L SY+ E +V V+ I G
Sbjct: 128 NLDKLDLPRLSLRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVEWVKWAIKQG 187
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL LL+ I A +G +R+GM NP +++ L E+ E
Sbjct: 188 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRIRVGMMNPNHVIKFLDELIE 244
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ VY FLH+PVQSG + +L
Sbjct: 245 AYQDDKVYKFLHLPVQSGDNEIL 267
>gi|337284314|ref|YP_004623788.1| hypothetical protein PYCH_08310 [Pyrococcus yayanosii CH1]
gi|334900248|gb|AEH24516.1| hypothetical protein PYCH_08310 [Pyrococcus yayanosii CH1]
Length = 428
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/263 (38%), Positives = 158/263 (60%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++ +GC+ N++D E+MAG L G+ + D EEA+ ++NTC VK P++ M I +
Sbjct: 4 VHIENYGCARNRADGEFMAGILMLAGHEIVDTIEEAEYVVVNTCAVKDPTEVKMARRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL---HRK 177
A K ++V GC+P + + + +++GV+ IDR+ +E +G ++ + ++
Sbjct: 64 LLDAGKKVIVTGCLPHVNPSVIDERASAVLGVKSIDRIAYAIETAERGEKIISVPDWRKR 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L L LP++ + ++PI GCL ACTYC T+ ARG L SY E +V V+ I G
Sbjct: 124 NLDKLTLPRLPTSGISFVVPIAEGCLNACTYCATRLARGVLKSYRPELIVNWVKWAIERG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
+E+WLS+EDTG YG DIG NL LL+ I A DG +R+GM NP +++ L E+ E
Sbjct: 184 YREIWLSAEDTGCYGFDIGTNLAELLDEITA---IDGEFRIRVGMMNPNHVIKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH+PVQSG + +L
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNEIL 263
>gi|393795212|ref|ZP_10378576.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 422
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 165/265 (62%), Gaps = 11/265 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G+ + NS E+D+ ++ TC+VK + + M I
Sbjct: 4 IFVEAYGCSASFADSEMISGLIVNGGHTIAKNSTESDLNIVVTCSVKDSTANKMIHRIKS 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
KS KPLVVAGC+P+ +L +E +S ++G + + ++V++ TL+G + L
Sbjct: 64 LKS--KPLVVAGCLPKA--ELSTVEKISKNASLLGPNSLGKTLQVIDSTLRGTKFVALED 119
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
L + LPKVR N+ V I+ I GC+ C++C+TK A+G L SY + +V +V T ++D
Sbjct: 120 TDLSKVGLPKVRLNEVVGIVEIASGCMSECSFCQTKLAKGDLQSYRIGDIVRQVETEVSD 179
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+WL+S D G YG DI +LP L+ A V+E+P D M+R+GM NP ++ E+
Sbjct: 180 GCKEIWLTSTDNGCYGFDINTDLPTLVKA-VSEIPED--FMIRVGMMNPMYMPRIKNELI 236
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLS 321
E VY FLH+PVQSGSD VL+
Sbjct: 237 ESFSSDKVYKFLHIPVQSGSDKVLN 261
>gi|161528769|ref|YP_001582595.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
gi|160340070|gb|ABX13157.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
Length = 422
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/263 (40%), Positives = 170/263 (64%), Gaps = 9/263 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++++GCS + +DSE ++G + G+ L ++S E+D+ ++ TC+VK + + M + +
Sbjct: 4 IFVESYGCSASFADSEMISGLILNGGHTLVEDSSESDLNVVVTCSVKDATANKM---VHR 60
Query: 121 CKSAK-KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
KS K KPLVVAGC+P+ ++ E E S++G + + ++V++ TLKG + L
Sbjct: 61 IKSLKTKPLVVAGCLPKAEKETVEKFSENASLLGPNSLGKTLQVIDSTLKGRKKIALEDT 120
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L + LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +V+T I +G
Sbjct: 121 DLSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKISKGDLQSYRLGDIVRQVKTEINEG 180
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KEVWL+S D G YG DIG +LP L+NA V+E+P + M+R+GM NP ++ +++ E
Sbjct: 181 CKEVWLTSTDNGCYGFDIGTDLPSLINA-VSEIPEE--FMIRVGMMNPMYMPRIKEKLIE 237
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ V+ FLH+PVQSGSD VL
Sbjct: 238 SYDNDKVFKFLHIPVQSGSDKVL 260
>gi|315231263|ref|YP_004071699.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus barophilus MP]
gi|315184291|gb|ADT84476.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus barophilus MP]
Length = 424
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 164/260 (63%), Gaps = 4/260 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L GY + D + AD ++NTC VK P+++ M I +
Sbjct: 3 VHIETYGCTRNKADAEIMEALLVNAGYEIVD-LDSADYVIVNTCAVKDPTENHMRKRIKE 61
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
A K ++V GC+P + + + +I+GV+ I+R+ E +E +G ++ + ++ +
Sbjct: 62 LLDAGKKVIVTGCLPHINIEAIDERVSAILGVKSINRITEAIELAERGVKLVDVEQRGID 121
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
L+LP++ ++K V ++PI+ GCL ACTYC T+ ARG L SY+ E +V V+ +A G KE
Sbjct: 122 KLELPRMWKSKVVFVVPISEGCLNACTYCATRFARGILKSYSPEKIVRWVKEALAKGYKE 181
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ LSSEDTG YG DIG NL LL+ + + +G +R+GM NP +++ L E+ + +
Sbjct: 182 IQLSSEDTGCYGFDIGTNLAELLDELTS---IEGEFRIRVGMMNPNHVIKFLDELIDAYK 238
Query: 301 HPCVYSFLHVPVQSGSDAVL 320
+Y FLH+PVQSG + +L
Sbjct: 239 DEKIYKFLHLPVQSGDNEIL 258
>gi|57641999|ref|YP_184477.1| 2-methylthioadenine synthetase [Thermococcus kodakarensis KOD1]
gi|57160323|dbj|BAD86253.1| probable 2-methylthioadenine synthetase [Thermococcus kodakarensis
KOD1]
Length = 427
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 160/263 (60%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++++GC+ N++D E M L GY L ++ E AD ++NTC VK P++ M I +
Sbjct: 4 VYVESYGCTRNKADGEIMEAILLRAGYELAESPESADYVVVNTCAVKDPTEHKMARRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++ GC+ + D+ + ++GV+ IDR+ E ++ +G + V +
Sbjct: 64 LLDSGKKVIATGCLVHVNPDVIDPRVSGMLGVKSIDRIAEAIDLAERGGKLVSVEGWKER 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
K+ L+LP++ ++ V ++PI+ GCL ACTYC T+ ARG L SY E ++ V+ +A G
Sbjct: 124 KVDKLELPRLWKSGVVFVVPISEGCLNACTYCATRFARGVLKSYKPELVLKWVKEALARG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +++ L E+ E
Sbjct: 184 YKEIQLSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRIRVGMMNPNHVIKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
V + P VY FLH+PVQSG + VL
Sbjct: 241 VYQDPKVYKFLHLPVQSGDNEVL 263
>gi|329765663|ref|ZP_08257235.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137855|gb|EGG42119.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 422
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 165/265 (62%), Gaps = 11/265 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G+ + NS E+D+ ++ TC+VK + + M I
Sbjct: 4 IFVEAYGCSASFADSEMISGLIVNGGHTIAKNSTESDLNIVVTCSVKDSTANKMIHRIKS 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
KS KPLVVAGC+P+ +L +E +S ++G + + ++V++ TL+G + L
Sbjct: 64 LKS--KPLVVAGCLPKA--ELSTVEKISKNASLLGPNSLGKTLQVIDSTLRGTKFVALED 119
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
L + LPKVR N+ V I+ I GC+ C++C+TK A+G L SY + +V +V T +++
Sbjct: 120 TDLSKVGLPKVRLNEVVGIVEIASGCMSECSFCQTKLAKGDLQSYRIGDIVRQVETEVSE 179
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+WL+S D G YG DI +LP L+ A V+E+P D M+R+GM NP ++ E+
Sbjct: 180 GCKEIWLTSTDNGCYGFDINTDLPTLVKA-VSEIPED--FMIRVGMMNPMYMPRIKNELI 236
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLS 321
E VY FLH+PVQSGSD VL+
Sbjct: 237 ESFSSDKVYKFLHIPVQSGSDKVLN 261
>gi|405971863|gb|EKC36670.1| hypothetical protein CGI_10015051, partial [Crassostrea gigas]
Length = 354
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/160 (60%), Positives = 119/160 (74%), Gaps = 9/160 (5%)
Query: 168 GHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
GH VRL +KKL AL LPK+R+N +EI+ IN GCL CTYCKTKHARG LGS
Sbjct: 1 GHSVRLYGQKKLEGKKVGGAALSLPKIRKNPLIEIIAINTGCLNQCTYCKTKHARGELGS 60
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
Y + +V R + +GV E+WL+SED GAYG DIGV LP LL +V E+ P+G+ M R+
Sbjct: 61 YPPDEIVARAKQSFEEGVIEIWLTSEDLGAYGHDIGVTLPQLLWKLV-EVIPEGARM-RL 118
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
GMTNPP+ILEHL+E+A++LRHP VYSFLHVPVQS SD+VL
Sbjct: 119 GMTNPPYILEHLEEMAKILRHPRVYSFLHVPVQSASDSVL 158
>gi|341582604|ref|YP_004763096.1| 2-methylthioadenine synthetase [Thermococcus sp. 4557]
gi|340810262|gb|AEK73419.1| 2-methylthioadenine synthetase [Thermococcus sp. 4557]
Length = 425
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 154/263 (58%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L + GY L + E AD ++NTC VK P++ M I +
Sbjct: 4 VHVETYGCTRNRADAEMMEAILVSAGYGLAETPETADYVVVNTCAVKDPTEKHMRERIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
A + ++V GC+P + D + I+GV+ IDR+ E + +G + V +
Sbjct: 64 LLDAGRKVIVTGCLPHVNPDAIDSRVSGILGVKSIDRIAEAISLAERGGKLVSVEGWRER 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+ L+LP++ + ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 NIDKLELPRLWKGGVAFVVPISEGCLNACTYCATRFARGVLRSYKPELVVKWVKEALARG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
+E+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +L L E+ +
Sbjct: 184 YREIQLSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRVRVGMMNPNHVLRFLDELVD 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
VY F+H+PVQSG D VL
Sbjct: 241 AYTDEKVYRFIHLPVQSGDDEVL 263
>gi|386876686|ref|ZP_10118774.1| MiaB-like tRNA modifying enzyme, archaeal-type [Candidatus
Nitrosopumilus salaria BD31]
gi|386805442|gb|EIJ64973.1| MiaB-like tRNA modifying enzyme, archaeal-type [Candidatus
Nitrosopumilus salaria BD31]
Length = 422
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 163/262 (62%), Gaps = 7/262 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G++L DNS ++D+ ++ TC+VK + + M I
Sbjct: 4 IFVEAYGCSASFADSEMISGLIQNGGHSLVDNSSDSDLNIVVTCSVKDSTANKMMHRIKS 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
KS KPL+VAGC+P+ +D E + S++G + + ++V+ TL G L
Sbjct: 64 LKS--KPLIVAGCLPKAEKDTVEKFSKKASLLGPNSLGKTLQVINTTLDGRRQIALEDSD 121
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L + LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +++T I +G
Sbjct: 122 LSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKLSKGDLSSYRLGDIVRQIQTEIKEGC 181
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+WL+S D G YG DIG +LP L+NA+V E+P + M+R+GM NP ++ + + E
Sbjct: 182 KEIWLTSTDNGCYGFDIGTDLPSLVNAVV-EIPEN--FMVRVGMMNPMYMPRIKERLIES 238
Query: 299 LRHPCVYSFLHVPVQSGSDAVL 320
+ V+ FLH+PVQ GS+ VL
Sbjct: 239 FDNDKVFKFLHIPVQCGSNKVL 260
>gi|340345320|ref|ZP_08668452.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520461|gb|EGP94184.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 422
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 163/263 (61%), Gaps = 7/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G+ L +S E+D+ ++ TC+VK + + M I
Sbjct: 4 IFVEAYGCSASFADSEMISGLIVNGGHTLVKDSSESDLNIVVTCSVKDSTANKMMHRINS 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKE--LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
KS KPLVVAGC+P+ ++ E + S++G + + ++V++ TL+G + L
Sbjct: 64 LKS--KPLVVAGCLPKAEQNTVEKITQKASLLGPNSLGKTLQVIDSTLRGIKQVALEDSD 121
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L + LPKVR N + I+ I GC+ CT+C+TK ++G L SY + +V +V T I++G
Sbjct: 122 LSKVGLPKVRLNPVIGIIEIASGCMSECTFCQTKLSKGDLKSYRLGDIVRQVETEISEGC 181
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+WL+S D G YG DI +LP L+NA V E+P D M+R+GM NP ++ E+ +
Sbjct: 182 KEIWLTSTDNGCYGLDINTDLPTLINA-VTEIPED--FMIRVGMMNPMYMPRIKNELIKS 238
Query: 299 LRHPCVYSFLHVPVQSGSDAVLS 321
VY FLH+PVQSGS+ VL+
Sbjct: 239 FDSDKVYKFLHIPVQSGSNKVLN 261
>gi|375082214|ref|ZP_09729282.1| 2-methylthioadenine synthetase [Thermococcus litoralis DSM 5473]
gi|374743102|gb|EHR79472.1| 2-methylthioadenine synthetase [Thermococcus litoralis DSM 5473]
Length = 422
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 158/263 (60%), Gaps = 7/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L GY + + + A+ ++NTC VK P++ M I +
Sbjct: 3 VHIETYGCTRNKADAEIMEALLLKAGYEIAE-LDSAEYVVVNTCAVKDPTEKHMSKRIKE 61
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++V GC+P + D + I+GV+ IDR+VE ++ KG + V +
Sbjct: 62 LIDSGKRVIVTGCLPHVNPDAIDERASGILGVKSIDRIVEAIQLAEKGEKLISVEGWKER 121
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+ L+LP++ + V ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 122 SIDKLELPRIWKGGVVFVVPISEGCLNACTYCATRFARGVLKSYKPELIVKWVKEALAKG 181
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP ++ L E+ E
Sbjct: 182 YKEIQLSSEDTGCYGFDIGTNLAKLLDEITA---IEGDFRVRVGMMNPNNAIKILDELVE 238
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
V + +Y FLH+PVQSG + +L
Sbjct: 239 VYKDEKIYKFLHLPVQSGDNEIL 261
>gi|68445550|dbj|BAE03259.1| hypothetical conserved protein [unclutured Candidatus Nitrosocaldus
sp.]
Length = 454
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 156/267 (58%), Gaps = 8/267 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++ +GCS + SD E +AG + GY L N +EAD +I TC VK + + M I +
Sbjct: 10 VWLEVYGCSSSLSDGEIIAGIIVGKGYELASNFDEADASIIVTCVVKDATANRMVERIKR 69
Query: 121 CKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
S KPLVVAGC+ + +R + SIVG IDRV + L G + LL
Sbjct: 70 LSS--KPLVVAGCMAKAEPNRIRRFNPRASIVGPNAIDRVDTALASALDGKGIVLLD-GS 126
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
+ + LPK+R N + ++ I GCL CT+C+T+ A+G L SY + +V +VR + G
Sbjct: 127 MQKVGLPKIRVNPVISMVQIGSGCLSECTFCETRIAKGRLTSYRIGDIVRQVREDVEQGC 186
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
+EVWL+S D GAYGRDIG NL L+ A+ + D M+R+GM NP ++ L ++ E
Sbjct: 187 REVWLTSTDNGAYGRDIGTNLVELIKAVCS---IDAEFMIRVGMMNPQYLPLMLDDLIEA 243
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSVSQK 325
R V+ F+H+PVQSGSD VL + ++
Sbjct: 244 YRDDKVFKFIHIPVQSGSDRVLRLMRR 270
>gi|390961316|ref|YP_006425150.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
CL1]
gi|390519624|gb|AFL95356.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
CL1]
Length = 424
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 152/263 (57%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L GY L + E AD ++NTC VK P++ M I +
Sbjct: 4 VHVETYGCTRNRADAEMMEAILLRAGYELVETPESADYVVVNTCAVKDPTEKHMRERIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++ GC+ + + I+GV+ IDR+ E + +G + V +
Sbjct: 64 LLDSGKKVIATGCLVHVNPGAIDPRVSGILGVKSIDRIAEAISVAERGGKLISVEGWRER 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+ L+LP++ +N ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 SIDKLELPRLWKNGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVRWVKEALARG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP ++ L E+ E
Sbjct: 184 YKEIQLSSEDTGCYGFDIGTNLAKLLDEITA---IEGDFRVRVGMMNPNHAIKFLDELVE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
R VY FLH+PVQSG D VL
Sbjct: 241 AYRDEKVYKFLHLPVQSGDDEVL 263
>gi|302806569|ref|XP_002985034.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
gi|300147244|gb|EFJ13909.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
Length = 613
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 117/233 (50%), Positives = 144/233 (61%), Gaps = 35/233 (15%)
Query: 88 ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGV 147
A++D+ + AD+WLINTCTVK+P+ M+TLI K K+A PLV + G + +
Sbjct: 2 AISDSPQRADLWLINTCTVKAPT---METLIRKGKAASIPLVDSWMRSSGFKRSR----- 53
Query: 148 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
Q+ ETLKGHE LL R LP+LDLPKV +NKFVEI+PINVGCLGACT
Sbjct: 54 ---SCQRHRSAANTAGETLKGHEAWLLRRDALPSLDLPKVCKNKFVEIIPINVGCLGACT 110
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
YCKTKHARGHLGSYTV++LV R++TV+++ GRDIG N+P LL A+V
Sbjct: 111 YCKTKHARGHLGSYTVDTLVQRLKTVVSE---------------GRDIGANIPALLCALV 155
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
A LP N P + HL HPCVYSFLHV VQSG D+VL
Sbjct: 156 AALPHRQK-------YNAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVL 199
>gi|288560943|ref|YP_003424429.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
gi|288543653|gb|ADC47537.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
Length = 428
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 157/266 (59%), Gaps = 11/266 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ NQ+DSE MAG L+ L EEAD ++NTC VK P++S + I
Sbjct: 6 VFIETYGCTFNQADSEIMAGILNENNIGLVSTEEEADAIIVNTCYVKLPTESKVINRIKN 65
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ K ++V GC+ + D K+LE + S +G Q+++ +VV+ T+ G VR
Sbjct: 66 LQKQYPDKKIIVGGCMVE--VDPKKLEAIGPNCSWIGPHQLNKTADVVKSTIGGEIVREF 123
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
P + +PK+R++ ++ ++ I GCLGACTYC T+ ARGHL SY ++ +V R I
Sbjct: 124 GFSDEPKVCVPKIRKDPYIHVIQICEGCLGACTYCCTRFARGHLNSYPIKDIVEEARLAI 183
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
DG E+ L+++DT A+G+D G L L+ + + DG +R+GM +P I L
Sbjct: 184 EDGCVEIELTAQDTSAFGKDTGEKLSDLIKEVAS---LDGDFRVRVGMMHPRNIGNDLDN 240
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ E + VY F+H+P+QSGSD VL
Sbjct: 241 LIEAFKMEKVYDFIHLPIQSGSDKVL 266
>gi|212224708|ref|YP_002307944.1| 2-methylthioadenine synthetase [Thermococcus onnurineus NA1]
gi|212009665|gb|ACJ17047.1| Hypothetical 2-methylthioadenine synthetase [Thermococcus
onnurineus NA1]
Length = 425
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 153/263 (58%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L GY L + E AD ++NTC VK P++ M I +
Sbjct: 4 VHVETYGCTRNKADAEIMEAILLRAGYELVETPESADYVVVNTCAVKDPTEKHMRERIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVV---EETLKGHEVRLLHRK 177
+ K ++V GC+ + D+ + I+GV+ IDR+ E + E K V +
Sbjct: 64 LLDSGKRVIVTGCLTHVNPDIIDPRVSGILGVKSIDRIAEAIDLAERDGKLVSVEGWRER 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L L LP++ R+ ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 SLDKLGLPRLWRSGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVKWVKEALARG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
+E+ LSSEDTG YG DIG NL LL+ I + +G +R+GM NP ++ L E+ E
Sbjct: 184 YREIQLSSEDTGCYGFDIGTNLAELLDEITS---IEGEFRIRVGMMNPNHAIKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ VY FLH+PVQSG + VL
Sbjct: 241 AYQDEKVYKFLHLPVQSGDNEVL 263
>gi|167042354|gb|ABZ07082.1| putative Radical SAM superfamily protein [uncultured marine
crenarchaeote HF4000_ANIW97M7]
Length = 422
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 160/263 (60%), Gaps = 7/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G+ L + E+D+ LI TC+VK + + M I +
Sbjct: 4 IWVEAYGCSSSFADSEMISGLIVNGGHTLVQDQSESDLNLIVTCSVKDVTATRMVHRIKQ 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKE--LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+S KPLVVAGC+P+ R E + S++G I + ++V+E TL G +V L
Sbjct: 64 SQS--KPLVVAGCLPKAERHTVEKFAQNASMMGPNSIGKTLQVIEATLNGSKVVALDDTD 121
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L + +PK+R N V I+ I GC+ CT+C+TK A+G L SY + +V +V+ +ADG
Sbjct: 122 LSKVGIPKIRLNPAVGIVEIANGCMSECTFCQTKLAKGDLNSYRIGDIVRQVKRELADGC 181
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+WLSS D G YG DIG +L L+ V+++P D +R+GM NP F+ + +
Sbjct: 182 KEIWLSSTDNGCYGLDIGEDLSSLIEQ-VSQIPEDFK--IRVGMMNPMFMPRIRDNLLKS 238
Query: 299 LRHPCVYSFLHVPVQSGSDAVLS 321
+ V+ FLHVPVQSGS+ VL+
Sbjct: 239 FENNKVFRFLHVPVQSGSNDVLN 261
>gi|409096282|ref|ZP_11216306.1| 2-methylthioadenine synthetase [Thermococcus zilligii AN1]
Length = 424
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 150/263 (57%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D E M L GY L + E+AD ++NTC VK P++ M I +
Sbjct: 4 VHVETYGCTRNRADGEIMEAILVRAGYELAETPEDADYVVVNTCAVKDPTEKHMKERIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++V GC+P + + I+GV+ IDR+ E VE +G + V +
Sbjct: 64 LLDSGKRVIVTGCLPHVNPSTIDPRVSGILGVKSIDRIAEAVERAERGEKFVSVEGWRER 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L+LP++ ++ ++PI GCL ACTYC T ARG L SY E +V V+ + G
Sbjct: 124 NSDKLELPRLWKSGVAFVVPIGEGCLNACTYCSTHFARGVLKSYRPELIVKWVKEALIRG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ LSSEDTG YG DIG NL LL I A +G +R+GM NP ++ L E+ +
Sbjct: 184 YKEIQLSSEDTGCYGFDIGTNLAKLLEEITA---IEGDFRVRVGMMNPNHVIRILDELID 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ VY FLH+PVQSG + VL
Sbjct: 241 AYQSGKVYKFLHLPVQSGDNGVL 263
>gi|312136430|ref|YP_004003767.1| RNA modification enzyme, miab family [Methanothermus fervidus DSM
2088]
gi|311224149|gb|ADP77005.1| RNA modification enzyme, MiaB family [Methanothermus fervidus DSM
2088]
Length = 427
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 163/264 (61%), Gaps = 7/264 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC++N++DS+ +AG L + D+ +EAD+ ++NTC VK P++ + I +
Sbjct: 3 VYIETYGCTYNKADSQIIAGILEKENIKVVDSIDEADVIILNTCYVKQPTEHKIINRIRE 62
Query: 121 CKSA--KKPLVVAGCVPQ-GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
++ K L+VAGC+ + LK++ S +G ++ + EVV+ + G++ ++ +
Sbjct: 63 LQNTYKSKELIVAGCMVEIDPEKLKKIAPESAWLGPHKLHKAPEVVKSVINGNKKKVYGK 122
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+++PK R N + I+ I GCLG C+YC T+ ARG L SY ++S+V V+ I D
Sbjct: 123 DSKIKVEMPKKRFNSHIHIVQICEGCLGNCSYCCTRFARGRLYSYPLDSIVKDVKKAIED 182
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G E+ L+++DT AYGRDIG +LP L+N I + DG +R+GM +P + + L E+
Sbjct: 183 GCVEIQLTAQDTAAYGRDIGCDLPTLINKITS---LDGKFKIRVGMMHPKNVKKILDELV 239
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH+PVQSGSD VL
Sbjct: 240 DAYDSEKIYKFLHLPVQSGSDKVL 263
>gi|408383124|ref|ZP_11180663.1| MiaB family RNA modification protein [Methanobacterium formicicum
DSM 3637]
gi|407814232|gb|EKF84864.1| MiaB family RNA modification protein [Methanobacterium formicicum
DSM 3637]
Length = 424
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 155/266 (58%), Gaps = 11/266 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IYM+TFGC+ NQ+DS+ +AG L G + + EEAD+ ++NTC VK P++ + I K
Sbjct: 3 IYMETFGCTFNQADSQIIAGLLEENGGKIVKSPEEADVIIMNTCYVKQPTEQKITNRIGK 62
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 174
++ +K L++AGC+ D ++LE ++ +G ++I+ EVVE +KGH VR
Sbjct: 63 LQAQFPQKKLLIAGCMV--DIDPEKLEKMAPQAGWIGARRINSAPEVVEAVMKGHLVRET 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
LP+ R N +V IL I GCLG C+YC T+ ARG L SY + L +
Sbjct: 121 GHGDEFKTCLPRKRSNPWVHILQICEGCLGKCSYCCTRFARGGLQSYPISLLKSEAEQAV 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
ADG E+ L+++DT AYG+D G L L+N I + G +R+GM +P I L+
Sbjct: 181 ADGCVEIQLTAQDTAAYGKDSGETLADLINEISS---IKGDFRIRVGMMHPKNIANDLES 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL 320
I ++ VY FLH+P+QSGSD +L
Sbjct: 238 IITAFKNDKVYKFLHLPLQSGSDQIL 263
>gi|223478016|ref|YP_002582106.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus sp. AM4]
gi|214033242|gb|EEB74070.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus sp. AM4]
Length = 424
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 156/263 (59%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++++GCS N++D E M L G+ L + E AD ++NTC VK P++ M I +
Sbjct: 4 VHVESYGCSRNKADGEIMEALLLKAGHELVETPENADYVVVNTCAVKDPTEFKMAKRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH--RKK 178
+ K ++ GC+ + D + I+GV+ IDR+ E +E +G ++ + R++
Sbjct: 64 LLDSGKKVIATGCLVHVNPDAIDPRVSGILGVKSIDRIAEAIEIAERGGKLVSVEGWRER 123
Query: 179 LP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P L+LP++ + ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 NPDKLELPRLWKPGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVKWVKEALARG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
+E+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YREIILSSEDTGCYGFDIGTNLAELLDEITA---IEGEFRVRVGMMNPNHVLKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ VY FLH+PVQSG + +L
Sbjct: 241 AYQDEKVYRFLHLPVQSGDNEIL 263
>gi|348019711|gb|AEP43797.1| radical sam [Biston betularia]
Length = 188
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 90/141 (63%), Positives = 108/141 (76%), Gaps = 2/141 (1%)
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
+L LPKVR+N +EI+ IN GCL CTYCKTKHARG LGSY E +V R R +GV E
Sbjct: 7 SLLLPKVRKNPHIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERARLSFQEGVVE 66
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+WL+SEDTG YGRDIG +LP LL +V E+ P+G LR+GMTNPP+ILEHL+E+A ++
Sbjct: 67 IWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPYILEHLEEVARIMH 124
Query: 301 HPCVYSFLHVPVQSGSDAVLS 321
HP VY FLHVPVQSGSD VLS
Sbjct: 125 HPRVYKFLHVPVQSGSDQVLS 145
>gi|410720277|ref|ZP_11359634.1| MiaB-like tRNA modifying enzyme [Methanobacterium sp. Maddingley
MBC34]
gi|410601324|gb|EKQ55841.1| MiaB-like tRNA modifying enzyme [Methanobacterium sp. Maddingley
MBC34]
Length = 425
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 154/267 (57%), Gaps = 11/267 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IYM+TFGC+ NQ+DS+ MAG L G + + E+AD+ +INTC VK P++ + I K
Sbjct: 3 IYMETFGCTFNQADSQIMAGLLEETGGKIVKSPEDADVIIINTCYVKQPTEQKITNRIGK 62
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 174
++ +K L++AGC+ D ++LE ++ +G ++I+ EVVE + GH R
Sbjct: 63 LQAQFPQKKLIIAGCMV--DIDSEKLEKMAPQAGWIGARRINSAPEVVEAVMNGHLARET 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
LP+ R N V IL I GCLG C+YC T+ ARG L SY L +
Sbjct: 121 GHGDDIKTCLPRKRSNPMVHILQICEGCLGKCSYCCTRFARGGLQSYPTSLLKAEAEQAV 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
ADG E+ L+++DT AYG+D G +L L+N I + +G +RIGM +P I L+
Sbjct: 181 ADGCVEIQLTAQDTAAYGKDTGESLADLINEICS---IEGDFRIRIGMMHPKNIKGDLEA 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLS 321
I ++ VY FLH+P+QSGS+ +LS
Sbjct: 238 IITSFKNEKVYKFLHLPLQSGSNQILS 264
>gi|288931237|ref|YP_003435297.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
gi|288893485|gb|ADC65022.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
Length = 422
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 160/263 (60%), Gaps = 8/263 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ NQ+DS+ M G LS YA D++EEAD+ ++NTC V ++ + I +
Sbjct: 3 VYIETYGCTMNQADSDIMRGLLSR-EYAFADSAEEADVVIVNTCGVIGFTERKILRRIEE 61
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K K ++ AGC+ + +R ++ ++V + R+ E V+ L G V +++ ++
Sbjct: 62 IKGMGKKVIAAGCLARIARKRLKIAD-ALVSPDNVHRINEAVKAVLNGERVEIINVSRVD 120
Query: 181 ALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
++ V+ + + I+ I+ GCLG C+YC TK ARG L S+++E +V V+ V+ G
Sbjct: 121 KAEISGVKCRLKENAIAIVSISEGCLGNCSYCATKIARGRLRSFSIEKIVEEVKKVVEMG 180
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ L+S+DTGAYG+D G LP LL I +E+ +G +R+GM NP +E L ++ E
Sbjct: 181 YKEIQLTSQDTGAYGKDKGYRLPDLLEKI-SEI--EGDFRVRVGMMNPQHAMEILDDLIE 237
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH+PVQSG + VL
Sbjct: 238 AFKSEKIYKFLHLPVQSGDNKVL 260
>gi|193084232|gb|ACF09895.1| MiaB-like tRNA modifying enzyme [uncultured marine crenarchaeote
AD1000-23-H12]
Length = 422
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 161/268 (60%), Gaps = 5/268 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++++GCS N +D+E ++G LS GY + +N ++D+ +I TCTVK P+ + M I
Sbjct: 3 VHVESYGCSANIADAEMISGLLSQKGYNVLNNDPDSDLNVIVTCTVKDPTFNKMVKRIKS 62
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
S KPL++AGC+P+ D L+ + S++ + V+ + L G + + K+
Sbjct: 63 LSSTGKPLIIAGCMPKTELDKILQINDQASLLDPGSVHLAVDAAKAALAGEKFESISSKR 122
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
+ LP++R N V I ++ GCL CT+C+ K ARG L SY +V + + DG
Sbjct: 123 SNKVLLPRLRSNPVVHIAEVSQGCLSKCTFCQVKFARGGLVSYRPLDIVREIEQAVIDGC 182
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
+E+WL+S+D G YG+DI +LP LLN I+ ++ DG M+R+GM NP + E + ++
Sbjct: 183 REIWLTSQDIGCYGKDIKTSLPELLN-IICDI--DGDFMVRVGMMNPMHLDEIIDDLITS 239
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSVSQKI 326
P ++ FLH+PVQSGSD +L + +++
Sbjct: 240 YMDPKIFKFLHIPVQSGSDEILKLMKRM 267
>gi|240104185|ref|YP_002960494.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
gammatolerans EJ3]
gi|239911739|gb|ACS34630.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
gammatolerans EJ3]
Length = 424
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 156/263 (59%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++++GCS N++D E M L GY L + ++AD ++NTC VK P++ M I +
Sbjct: 4 VYVESYGCSRNRADGEIMEAILLRAGYELAEGPDKADYVVVNTCAVKDPTELKMVRRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH--RKK 178
+ K ++ GC+ + + + I+GV+ IDR+ E + +G ++ + R++
Sbjct: 64 LLDSGKKVIATGCLVHVNPEAIDPRVSGILGVKSIDRIAEAISVAERGEKLISVEGWRER 123
Query: 179 LP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P L+LP++ + ++PI+ GCL ACTYC T+ ARG L SY E ++ VR ++ G
Sbjct: 124 NPDKLELPRLWKPGVSFVVPISEGCLNACTYCATRFARGVLKSYKPELVIKWVREAVSRG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
+E+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YREIILSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRVRVGMMNPNHVLKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH+PVQSG + +L
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNEIL 263
>gi|118576134|ref|YP_875877.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
gi|118194655|gb|ABK77573.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
Length = 421
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/262 (40%), Positives = 154/262 (58%), Gaps = 7/262 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS +Q+DSE ++G L G+ L + EE+D +I TC VK + + M I
Sbjct: 4 IWIEAYGCSASQADSEMISGLLVNGGHTLAASPEESDAGVIVTCAVKDATANRMVHRIKM 63
Query: 121 CKSAKKPLVVAGCVPQGS-RDLKELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+PLVVAGC+P+ + + G +++G I R V VVE L+G L
Sbjct: 64 L--GGRPLVVAGCLPKAEPGTMARISPGAALMGPNSIGRTVPVVEAALRGERRIELDDTD 121
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L LPKVR N+ V I+ I GCL CT+C+TK A+G LGSY + +V +VR + DG
Sbjct: 122 LTKTGLPKVRLNEAVGIVEIASGCLSECTFCQTKLAKGDLGSYRIGDIVRQVRAEVDDGC 181
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
EVWL+S D G YG DI +LP LL+A++ +P G +R+GM NP ++ + +A+
Sbjct: 182 SEVWLTSTDNGCYGFDISEDLPGLLDAVIT-IP--GRFRVRVGMMNPMYMPRIREGLAKS 238
Query: 299 LRHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH+PVQSGS +L
Sbjct: 239 FQSDKLYRFLHIPVQSGSGRIL 260
>gi|242399008|ref|YP_002994432.1| 2-methylthioadenine synthetase [Thermococcus sibiricus MM 739]
gi|242265401|gb|ACS90083.1| Probable 2-methylthioadenine synthetase [Thermococcus sibiricus MM
739]
Length = 424
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 154/263 (58%), Gaps = 7/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L GY + D + AD ++NTC VK P++ M I +
Sbjct: 3 VHIETYGCTRNKADAEMMEALLLRAGYEVVD-LDSADYVIMNTCAVKDPTEKHMARRIKE 61
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++V GC+P + + I+GV+ IDR++ +E +G + V +
Sbjct: 62 LLDSGKRVIVTGCLPHVNPSAIDERVSGILGVKSIDRIIGAIELAERGEKLINVEGWRER 121
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+ L++P+V + V ++PI+ GCL ACTYC T+ ARG L SY +V V+ +A G
Sbjct: 122 SIDKLEIPRVWKGGVVFVVPISEGCLNACTYCATRFARGVLKSYKPGLIVKWVKEAVAKG 181
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ LSSEDTG YG DIG NL LL+ I + +G +R+GM NP ++ L E+ E
Sbjct: 182 YKEIQLSSEDTGCYGFDIGTNLARLLDEITS---IEGEFRIRVGMMNPNNAVKVLDELIE 238
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH+PVQSG + +L
Sbjct: 239 AYKDNKIYKFLHLPVQSGDNEIL 261
>gi|389851459|ref|YP_006353693.1| methylthiotransferase [Pyrococcus sp. ST04]
gi|388248765|gb|AFK21618.1| putative methylthiotransferase [Pyrococcus sp. ST04]
Length = 405
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 146/246 (59%), Gaps = 6/246 (2%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
MA L G+ L + +A++ ++N+C VK P++ + I + K ++V GC+P
Sbjct: 1 MAALLYLAGHELVSDENDAEVVVVNSCAVKDPTERKIARRIKELLDEGKKVIVTGCLPHV 60
Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRKKLPALDLPKVRRNKFVE 194
+ D+ + +I+GV+ IDR+V+ VE L+G + V ++ L LDLP++
Sbjct: 61 NPDVIDERVSAILGVKSIDRIVQAVEYALRGEKLISVPDWKKRNLDKLDLPRLSPRGVHF 120
Query: 195 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 254
I+PI GCL ACTYC T+ ARG L SY+ E +V V+ I G KE+WLS+EDTG YG D
Sbjct: 121 IVPIAEGCLNACTYCATRLARGVLKSYSPEKVVEWVKWAIRQGYKEIWLSAEDTGCYGFD 180
Query: 255 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 314
IG NL LL+ I + +G +R+GM NP +++ L E+ E + +Y FLH+PVQS
Sbjct: 181 IGTNLAKLLDEITS---IEGEFRVRVGMMNPNHVMKFLDELIEAYKDEKIYKFLHLPVQS 237
Query: 315 GSDAVL 320
G + +L
Sbjct: 238 GDNEIL 243
>gi|304314978|ref|YP_003850125.1| 2-methylthioadenine synthetase [Methanothermobacter marburgensis
str. Marburg]
gi|302588437|gb|ADL58812.1| predicted 2-methylthioadenine synthetase [Methanothermobacter
marburgensis str. Marburg]
Length = 427
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 155/266 (58%), Gaps = 12/266 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++TFGC+ NQ+DSE MAG LS G +LT +EAD+ ++NTC VK P++ + I +
Sbjct: 6 VYIETFGCTFNQADSEIMAGVLSEAGASLT-GIDEADVIILNTCYVKHPTEHKVINRIKR 64
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 174
+ K LVVAGC+ + D ++LE +S +G Q+ R EVV +G R+
Sbjct: 65 IREMYPDKGLVVAGCMVEI--DPQKLESISGDASWLGPHQLMRTAEVVGAAYRGDVKRIT 122
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ +P+VR N + I+ I GC G+C+YC T+ ARG + SY + +V R I
Sbjct: 123 GFTSDVKVGVPRVRSNPLIHIIQICEGCSGSCSYCCTRFARGSIQSYPSDIIVQEAREAI 182
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
G +E+ L+++DT AYG D G L L+ I E+P G +R+GM +P +L L
Sbjct: 183 EAGCREIQLTAQDTAAYGSDTGERLSDLIREI-TEIP--GDFRVRVGMMHPASVLRDLDG 239
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ E R VYSFLH+PVQSGSD VL
Sbjct: 240 LVEAFRSEKVYSFLHLPVQSGSDRVL 265
>gi|402865946|ref|XP_003897161.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Papio anubis]
Length = 629
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 104/127 (81%), Gaps = 2/127 (1%)
Query: 194 EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR 253
EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGR
Sbjct: 259 EIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGR 318
Query: 254 DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
DIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQ
Sbjct: 319 DIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQ 376
Query: 314 SGSDAVL 320
S SD+VL
Sbjct: 377 SASDSVL 383
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 88/113 (77%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+K
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIK 172
>gi|374857474|dbj|BAL60326.1| hypothetical conserved protein, partial [uncultured crenarchaeote]
Length = 434
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 147/255 (57%), Gaps = 8/255 (3%)
Query: 73 SDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAG 132
SD E +AG + GY L N +EAD +I TC VK + + M I + S KPLVVAG
Sbjct: 2 SDGEIIAGIIVGKGYELASNFDEADASIIVTCVVKDATANRMVERIKRLSS--KPLVVAG 59
Query: 133 CVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRN 190
C+ + +R + SIVG IDRV + L G + LL + + LPK+R N
Sbjct: 60 CMAKAEPNRIRRFNPRASIVGPNAIDRVDTALASALDGKGIVLLD-GSMQKVGLPKIRVN 118
Query: 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGA 250
+ ++ I GCL CT+C+T+ A+G L SY + +V +VR + G +EVWL+S D GA
Sbjct: 119 PVISMVQIGSGCLSECTFCETRIAKGRLTSYRIGDIVRQVREDVEQGCREVWLTSTDNGA 178
Query: 251 YGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHV 310
YGRDIG NL L+ A+ + D M+R+GM NP ++ L ++ E R V+ F+H+
Sbjct: 179 YGRDIGTNLVELIKAVCS---IDAEFMIRVGMMNPQYLPLMLDDLIEAYRDDKVFKFIHI 235
Query: 311 PVQSGSDAVLSVSQK 325
PVQSGSD VL + ++
Sbjct: 236 PVQSGSDRVLRLMRR 250
>gi|74193201|dbj|BAE20608.1| unnamed protein product [Mus musculus]
Length = 218
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 114/156 (73%), Gaps = 7/156 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCL 203
+KK LDLPK+R+N +EI+ IN G +
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGII 214
>gi|392354291|ref|XP_003751729.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Rattus norvegicus]
Length = 212
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 112/154 (72%), Gaps = 7/154 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVG 201
+KK LDLPK+R+N +EI+ IN G
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTG 212
>gi|408403887|ref|YP_006861870.1| hypothetical protein Ngar_c12730 [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364483|gb|AFU58213.1| hypothetical protein Ngar_c12730 [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 435
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 160/274 (58%), Gaps = 6/274 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++ +GCS + +DSE ++G L GY + E + LI TC+VK ++ M + I
Sbjct: 9 VWVEAYGCSASMADSEMISGLLKGAGYEIASKQSEGALNLIVTCSVKDTTEHRMVSRIKA 68
Query: 121 CKSAKKPLVVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ KPLVVAGC+P+ R ++ L + S++G I++ V+VV L G + L
Sbjct: 69 MSKSGKPLVVAGCLPKADRAKVESLNSLASLLGPHSIEKAVDVVGSALAGGRLVALEDSV 128
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
+++P+VR N V I+ I GC+ CT+C+TK A+G L SY + ++ +++ I G
Sbjct: 129 ADKVNIPRVRLNPMVSIVEIASGCMSECTFCQTKIAKGWLRSYRIGDIMRQIKADINAGC 188
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KEVWL+S D G YG+D+G +L LL A + +G +R+GM NP ++ E L + +V
Sbjct: 189 KEVWLASTDNGCYGKDMGTDLVELLRACCS---IEGDFKIRLGMMNPMYVPEMLNRMVDV 245
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKS 331
+ ++ FLH+PV+SGSD VL ++ TK+
Sbjct: 246 FYENEKLFRFLHIPVESGSDRVLRKMKRGHTTKT 279
>gi|388254688|gb|AFK24805.1| MiaB-like tRNA modifying enzyme [uncultured archaeon]
Length = 450
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 152/263 (57%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++ +GCS + +DSE ++G L GY + N E + LI TC+VK ++ M + I
Sbjct: 27 VWIEAYGCSASMADSEMISGLLKGSGYEIASNQSEGALNLIVTCSVKDTTEHRMVSRIKA 86
Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ KPLV+AGC+P+ R E S++G I+ VV L G + L
Sbjct: 87 LSRSGKPLVIAGCLPKADRAKVEALNSSASLLGPHSIESAPAVVGSALAGSPMVALEDSA 146
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
+++P+VR N V I+ I GC+ CT+C+TK A+G L SY + ++ ++++ + G
Sbjct: 147 SDKINIPRVRLNPTVSIVEIASGCMSECTFCQTKIAKGWLRSYRIGDIMRQIKSDVEAGC 206
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+WL+S D G YG+D+G +L LLNA + +G M+R+GM NP ++ E L +
Sbjct: 207 KEIWLASTDNGCYGKDMGTDLVELLNACSS---IEGDFMIRLGMMNPMYMPEMLDRMVNT 263
Query: 299 LR-HPCVYSFLHVPVQSGSDAVL 320
+ + ++ FLH+PV+SGSD +L
Sbjct: 264 FQENDKLFKFLHIPVESGSDRML 286
>gi|148642905|ref|YP_001273418.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
ATCC 35061]
gi|222445138|ref|ZP_03607653.1| hypothetical protein METSMIALI_00759 [Methanobrevibacter smithii
DSM 2375]
gi|148551922|gb|ABQ87050.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
ATCC 35061]
gi|222434703|gb|EEE41868.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanobrevibacter
smithii DSM 2375]
Length = 426
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 159/267 (59%), Gaps = 11/267 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+ T+GC+ N++D++ M G L L D+ E AD+ ++NTC VK P+++ + I +
Sbjct: 3 VYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKIQQ 62
Query: 121 C--KSAKKPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLL 174
K K ++V+GC+ + D ++LE V S +G Q+++ +VV T G +R
Sbjct: 63 LQEKFPDKKVIVSGCMVE--IDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIREC 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
K + +PKV + I+ I GCLGACT+C T+ ARG L SY ++ +V + I
Sbjct: 121 GFSKDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFARGPLNSYPIKDIVAEAKKAI 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
DG E+ L+++DT A+G D G L L+ VA L DG +R+GM +P IL ++ E
Sbjct: 181 DDGAVEIQLTAQDTAAFGYDSGEKLSDLIKE-VANL--DGEFRVRVGMMHPKNILNNVDE 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLS 321
I + ++HP VY+F+H+PVQ+GS+ VLS
Sbjct: 238 IIDAIKHPKVYNFIHLPVQTGSNKVLS 264
>gi|261350294|ref|ZP_05975711.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
DSM 2374]
gi|288861078|gb|EFC93376.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
DSM 2374]
Length = 426
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 159/267 (59%), Gaps = 11/267 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+ T+GC+ N++D++ M G L L D+ E AD+ ++NTC VK P+++ + I +
Sbjct: 3 VYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKIQQ 62
Query: 121 C--KSAKKPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLL 174
K K ++V+GC+ + D ++LE V S +G Q+++ +VV T G +R
Sbjct: 63 LQEKFPDKKVIVSGCMVE--IDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIREC 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
K + +PKV + I+ I GCLGACT+C T+ ARG L SY ++ +V + I
Sbjct: 121 GFSKDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFARGPLNSYPIKDIVAEAKKAI 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
DG E+ L+++DT A+G D G L L+ VA L DG +R+GM +P IL ++ E
Sbjct: 181 DDGAVEIQLTAQDTAAFGYDSGEKLSDLIKE-VANL--DGEFRVRVGMMHPKDILNNVDE 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLS 321
I + ++HP VY+F+H+PVQ+GS+ VLS
Sbjct: 238 IIDAIKHPKVYNFIHLPVQTGSNKVLS 264
>gi|333986908|ref|YP_004519515.1| MiaB family RNA modification protein [Methanobacterium sp. SWAN-1]
gi|333825052|gb|AEG17714.1| RNA modification enzyme, MiaB family [Methanobacterium sp. SWAN-1]
Length = 425
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 151/267 (56%), Gaps = 11/267 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++TFGC+ NQ+DS+ MAG L + E+AD+ +INTC VK P++ I
Sbjct: 2 NIYIETFGCTFNQADSQIMAGLLKENQEKIVSKPEDADVIIINTCYVKHPTEQKAINRIH 61
Query: 120 KCKSA--KKPLVVAGCVPQGSRDLKELE----GVSIVGVQQIDRVVEVVEETLKGHEVRL 173
K + K L+++GC+ + D K+L+ S +G ++ E+V+ G VR
Sbjct: 62 KVQKQFPDKKLIISGCMVE--IDKKKLQKAAPNASWIGPHKVTSTPEIVKSVFNGENVRS 119
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ + LPK+R N F+ I+ I GC G C+YC T+ ARG L SY E + V
Sbjct: 120 IGYGTDCKVCLPKIRSNPFIHIVQICEGCNGDCSYCCTRFARGSLQSYPTELIKREVEEA 179
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+A+G E+ ++++DT AYG+D G +L L+N I +G +R+GM +P I++ +
Sbjct: 180 VAEGCVEIQITAQDTAAYGKDTGTSLSKLINEITT---IEGDFKIRVGMMHPKSIMDDVD 236
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
I + ++ VY FLH+P+QSG+D VL
Sbjct: 237 GIIKAFKNEKVYKFLHIPIQSGNDDVL 263
>gi|15678846|ref|NP_275963.1| hypothetical protein MTH826 [Methanothermobacter thermautotrophicus
str. Delta H]
gi|6226399|sp|O26914.1|AMTAB_METTH RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|2621916|gb|AAB85324.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 424
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/267 (38%), Positives = 156/267 (58%), Gaps = 12/267 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++TFGC+ NQ+DSE MAG L G LT ++AD+ +INTC VK P++ + I K
Sbjct: 6 VYIETFGCTFNQADSEIMAGVLREEGAVLT-GIDDADVIIINTCYVKHPTEHKVINRIKK 64
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 174
+ +K LVVAGC+ + D +LE +S +G Q+ R + V G R+
Sbjct: 65 IQETYPEKGLVVAGCMVEI--DPSKLEAISGDASWLGPHQLRRAPQAVRAASNGLVERIT 122
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ +P+VR N + I+PI GC G+C+YC T+ ARG + SY + ++ R +
Sbjct: 123 GFTSDVKVKVPRVRSNPLIHIIPICEGCNGSCSYCCTRFARGRIQSYPSDLIISEAREAV 182
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
A G +E+ L+++DT AYG D G L ++ I + +P G+ +R+GM +P +L L
Sbjct: 183 ASGCREIQLTAQDTAAYGVDTGEKLSDIIKGI-SGIP--GNFRIRVGMMHPASVLRDLDG 239
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ E + VYSFLH+PVQSGSD+VL+
Sbjct: 240 LVEAFKSEKVYSFLHLPVQSGSDSVLA 266
>gi|41614804|ref|NP_963302.1| hypothetical protein NEQ008 [Nanoarchaeum equitans Kin4-M]
gi|40068528|gb|AAR38863.1| NEQ008 [Nanoarchaeum equitans Kin4-M]
Length = 413
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 146/265 (55%), Gaps = 16/265 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +++GC+ N+ D+ YM Q+ T+N EEAD+ +IN+C VK P+++ + I +
Sbjct: 3 VYFESYGCTLNKRDTLYMQAQIEN----TTNNLEEADVVVINSCIVKQPTETKILYRINQ 58
Query: 121 CKSAKKPLVVAGC-VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K +V+ GC V + KEL+ +S+V + DR+ E +E T KG V L +KK+
Sbjct: 59 LKKMGKKIVLTGCMVSEPYLKYKELQDISLVNIYNQDRIKEAIERTYKGERVLFLEKKKI 118
Query: 180 P---ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
A L K R I+ I GCL CTYC TK AR SY + + + +
Sbjct: 119 YKEFARPLSKAR-----AIIQIQEGCLWRCTYCGTKLARSMFYSYPPKLIKREIEEKLKQ 173
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G+K +L+ DT YG+DI +L LL ++ +G +R+GM NP F LE + E+
Sbjct: 174 GIKIFYLTGPDTATYGKDINYSLADLLKDLI---EIEGDFYIRVGMANPTFFLEQIDELI 230
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLS 321
+V + ++ F H+PVQSGS+ VL
Sbjct: 231 DVFKSNKIFKFFHLPVQSGSNKVLK 255
>gi|170289680|ref|YP_001736496.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170173760|gb|ACB06813.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 432
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 17/266 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GCS N+SDS+ M L G ++ EAD+ ++NTC VK+P++ M I +
Sbjct: 3 FYIETYGCSMNRSDSQIMEKLLEEAGLIRVNDPREADVIVLNTCNVKTPTEQRM---IQR 59
Query: 121 CKSAKK--PLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ K PLVVAGC+ QG + LK+ V +V ++ID++VE V + G L
Sbjct: 60 ARELSKYAPLVVAGCMAKSQGYK-LKDFSKV-LVAPREIDKIVEAVNSAIAGRRAEFLEW 117
Query: 177 KKLPALDLPKVRRN--KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ +D R+ + V I+PI GC+GACTYC T+ ARG L S+ +++ +
Sbjct: 118 R---FIDKSSYLRDPLELVGIIPIAEGCMGACTYCITRLARGGLTSFPKRNILRLAEHFL 174
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
G E+WL+SEDT AYGRD+G NL L+ + ++LP G +R+GM P L L E
Sbjct: 175 RKGAVELWLTSEDTAAYGRDMGENLANLIMDL-SDLP--GDFRIRVGMMTPSSALPILSE 231
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ R VY F H+PVQSGSD VL
Sbjct: 232 LIGAYRSRKVYKFFHLPVQSGSDRVL 257
>gi|15920732|ref|NP_376401.1| hypothetical protein ST0515 [Sulfolobus tokodaii str. 7]
gi|15621515|dbj|BAB65510.1| tRNA methylthiotransferase [Sulfolobus tokodaii str. 7]
Length = 418
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/267 (37%), Positives = 150/267 (56%), Gaps = 11/267 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+ DS M L G+ + D+ +AD+ ++NTC V+ ++ M I +
Sbjct: 3 VYIETYGCALNKGDSYIMMTLLKDRGHDIVDSYNQADVIVLNTCAVRLETEERMKQRIKE 62
Query: 121 CKSAKKPLVVAGCV--PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K K L++AGC+ Q + + SIVG Q ID++VE VE +G + L K+
Sbjct: 63 LKKIGKKLIIAGCLVSSQPALVMSLAPESSIVGAQSIDKIVEAVESNKRG--IFLEESKE 120
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L P++ K + I+PI GC G C +C TK AR L SY ++V V+ + G
Sbjct: 121 LVT---PRIFEGK-ISIIPIADGCAGDCNFCITKLARKKLRSYPPRNIVNAVKEAVQKGA 176
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ L+++DT AYG DI NL LL I L +G+ M+RIGM P + + EI E+
Sbjct: 177 VEIELTAQDTAAYGLDINYNLVELLKEI---LEIEGNYMIRIGMMTPELAFKQIDEILEI 233
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSVSQK 325
++ VY FLH+PVQSG D VL + +
Sbjct: 234 IKDKRVYKFLHLPVQSGDDRVLKLMNR 260
>gi|224146346|ref|XP_002325973.1| predicted protein [Populus trichocarpa]
gi|222862848|gb|EEF00355.1| predicted protein [Populus trichocarpa]
Length = 270
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 105/165 (63%), Gaps = 46/165 (27%)
Query: 128 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKV 187
L VAGCVPQGSR++KE GVSIVGVQQID VVEV+EETLKG EVR+L RK LPALDLP
Sbjct: 68 LAVAGCVPQGSRNMKE-PGVSIVGVQQIDHVVEVLEETLKGDEVRILTRKTLPALDLPP- 125
Query: 188 RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED 247
V+ADGVKE+WLSSED
Sbjct: 126 --------------------------------------------QVVADGVKEIWLSSED 141
Query: 248 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
TGAYG DIGVNLPILLNAIVAELP D STMLRIGM NPPFI E L
Sbjct: 142 TGAYGCDIGVNLPILLNAIVAELPSDASTMLRIGMKNPPFIREPL 186
>gi|325959667|ref|YP_004291133.1| MiaB family RNA modification protein [Methanobacterium sp. AL-21]
gi|325331099|gb|ADZ10161.1| RNA modification enzyme, MiaB family [Methanobacterium sp. AL-21]
Length = 425
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 149/266 (56%), Gaps = 11/266 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+ T GC+ NQ+DS+ MAG L L D E+AD ++NTC VK P++ + T I K
Sbjct: 3 VYIDTVGCTFNQADSQIMAGILKENRVELVDTPEDADTIIMNTCYVKHPTEQKVLTKIKK 62
Query: 121 CKSA--KKPLVVAGCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + L+++GC+ P+ D S +G +I E+V +G+ VR
Sbjct: 63 MQEQYPESKLLISGCMVEIDPEKLADAAP--EASWIGPHKIKSTYEIVNSVHEGNIVRET 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
P + LPKVR N + I+ I GC G CTYC T+ ARG + SY+ E + +
Sbjct: 121 GFSSEPKVGLPKVRTNPIIHIIQICEGCDGFCTYCCTRFARGRIQSYSSEMIKKEAEQAV 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+G KE+ L+++DT AYGRD G +L L+ ++++++ DG LR+GM +P I+ +
Sbjct: 181 TEGCKEIQLTAQDTAAYGRDTGESLADLI-SMISDI--DGKFKLRVGMMHPKSIMNQVDP 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL 320
I + + Y FLH+P+QSGSD VL
Sbjct: 238 IIKAFKKGKCYKFLHLPIQSGSDTVL 263
>gi|385772200|ref|YP_005644766.1| MiaB family RNA modification protein [Sulfolobus islandicus
HVE10/4]
gi|385774915|ref|YP_005647483.1| MiaB family RNA modification protein [Sulfolobus islandicus REY15A]
gi|323473663|gb|ADX84269.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus REY15A]
gi|323476314|gb|ADX81552.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
HVE10/4]
Length = 421
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 152/269 (56%), Gaps = 9/269 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+TIY++T+GC+ N++D+ M L + GY +N E ADI ++NTC V+ ++ M I
Sbjct: 2 KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61
Query: 119 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + K LVVAGC+ + L S++G Q ++R+++V++ E R +
Sbjct: 62 KELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIIDVIK-----SEERKIVL 116
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ AL P+ K + I+P+ GC G C++C TK AR L SY + +V R +
Sbjct: 117 EGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAVKA 175
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+ L+ +DT AYG D+G ++ L++ + DG M+RIGM P + + +
Sbjct: 176 GAKEIELTGQDTAAYGLDLGGSIS-LVDVVNKVTEIDGDFMIRIGMMTPEQAMRIIDNLI 234
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
EV+R+P VY F+H+PVQSG D VL + +
Sbjct: 235 EVMRNPKVYKFIHLPVQSGDDRVLKLMNR 263
>gi|227826584|ref|YP_002828363.1| MiaB family RNA modification protein [Sulfolobus islandicus
M.14.25]
gi|227829226|ref|YP_002831005.1| MiaB family RNA modification protein [Sulfolobus islandicus
L.S.2.15]
gi|229577995|ref|YP_002836393.1| MiaB family RNA modification protein [Sulfolobus islandicus
Y.G.57.14]
gi|229583207|ref|YP_002841606.1| MiaB family RNA modification protein [Sulfolobus islandicus
Y.N.15.51]
gi|229583748|ref|YP_002842249.1| MiaB family RNA modification protein [Sulfolobus islandicus
M.16.27]
gi|238618670|ref|YP_002913495.1| MiaB family RNA modification protein [Sulfolobus islandicus M.16.4]
gi|284996581|ref|YP_003418348.1| MiaB family RNA modification protein [Sulfolobus islandicus
L.D.8.5]
gi|227455673|gb|ACP34360.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
L.S.2.15]
gi|227458379|gb|ACP37065.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
M.14.25]
gi|228008709|gb|ACP44471.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
Y.G.57.14]
gi|228013923|gb|ACP49684.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
Y.N.15.51]
gi|228018797|gb|ACP54204.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
M.16.27]
gi|238379739|gb|ACR40827.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.16.4]
gi|284444476|gb|ADB85978.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
L.D.8.5]
Length = 421
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 152/269 (56%), Gaps = 9/269 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+TIY++T+GC+ N++D+ M L + GY +N E ADI ++NTC V+ ++ M I
Sbjct: 2 KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61
Query: 119 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + K LVVAGC+ + L S++G Q ++R+++V++ E R +
Sbjct: 62 KELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIIDVIK-----SEERKIVL 116
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ AL P+ K + I+P+ GC G C++C TK AR L SY + +V R +
Sbjct: 117 EGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAVKA 175
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+ L+ +DT AYG D+G ++ L++ + DG M+RIGM P + + +
Sbjct: 176 GAKEIELTGQDTAAYGLDLGGSIS-LVDVVNKVTEIDGDFMIRIGMMTPEQAMRIIDNLI 234
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
EV+R+P VY F+H+PVQSG D VL + +
Sbjct: 235 EVMRNPKVYKFIHLPVQSGDDRVLKLMNR 263
>gi|260841717|ref|XP_002614057.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
gi|229299447|gb|EEN70066.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
Length = 316
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/133 (63%), Positives = 102/133 (76%), Gaps = 5/133 (3%)
Query: 188 RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED 247
RRN V I P N CL CTYCKTKHARG LGSY E +V R R +GV E+WL+SED
Sbjct: 22 RRN--VLIFPSN-SCLNQCTYCKTKHARGELGSYPPEEIVSRARQSFEEGVVEIWLTSED 78
Query: 248 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307
TGAYG+DIGV LP LL +V E+ P+G MLR+GMTNPP+ILEHL+E+A++L HP VY+F
Sbjct: 79 TGAYGKDIGVTLPELLWRLV-EVIPEGC-MLRVGMTNPPYILEHLEEMAKILSHPRVYAF 136
Query: 308 LHVPVQSGSDAVL 320
LHVPVQ+ SD+VL
Sbjct: 137 LHVPVQAASDSVL 149
>gi|15899133|ref|NP_343738.1| hypothetical protein SSO2380 [Sulfolobus solfataricus P2]
gi|284173752|ref|ZP_06387721.1| hypothetical protein Ssol98_03728 [Sulfolobus solfataricus 98/2]
gi|384432728|ref|YP_005642086.1| MiaB family RNA modification protein [Sulfolobus solfataricus 98/2]
gi|13815682|gb|AAK42528.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261600882|gb|ACX90485.1| RNA modification enzyme, MiaB family [Sulfolobus solfataricus 98/2]
Length = 421
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 155/271 (57%), Gaps = 13/271 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ IY++T+GC+ N++D+ M L + GY +N E ADI ++NTC V+ ++ M I
Sbjct: 2 KNIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61
Query: 119 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + K LVVAGC+ + L S++G Q ++R+V++V+ E R +
Sbjct: 62 KELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIVDIVK-----SEERKIVI 116
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ AL P+ K + I+P+ GC G C++C TK AR L SY + +V R I
Sbjct: 117 EGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAIQS 175
Query: 237 GVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
G +E+ L+ +DT AYG D+G ++L ++N VA++ DG M+RIGM P + + +
Sbjct: 176 GAREIELTGQDTAAYGLDLGGSISLVDVVNK-VADI--DGDFMIRIGMMTPEQAMRIMDD 232
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E +R+P VY F+H+PVQSG D VL + +
Sbjct: 233 LIEAIRNPKVYKFIHLPVQSGDDRVLKLMNR 263
>gi|284162243|ref|YP_003400866.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
gi|284012240|gb|ADB58193.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
Length = 423
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 155/267 (58%), Gaps = 14/267 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ NQSDS+ M G L A + L D+++EAD+ +IN+C V ++ +
Sbjct: 4 VYIETYGCTMNQSDSDIMRGIL-AKNFELVDSADEADVVVINSCGVVDFTERKILKRAES 62
Query: 121 CKSAKKPLVVAGCVPQ-GSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K K +V+AGC+P+ ++ E+ VS V ID VV+ V LKG + L+ R
Sbjct: 63 LKRQGKKVVMAGCLPRIATKKCLEVSDALVSPDNVHVIDLVVKSV---LKGEKPILIDRT 119
Query: 178 KLPALDLPKVRRN---KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ ++ V+R + I+ I GC G C++C T+ ARG L S+ ES+V VR +
Sbjct: 120 DVDKSEISCVKRRLRENAIAIVSIAEGCTGRCSFCATRFARGRLRSFKFESIVDEVRKCV 179
Query: 235 ADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+G KE+ ++S+DTGAYG D G LP LL AI +E+ +G +R+GM NP +E L
Sbjct: 180 ENGFKEIQITSQDTGAYGLDKGRYMLPDLLRAI-SEI--EGDFRVRVGMMNPRHAVEMLD 236
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++ +Y F+H+PVQSG + VL
Sbjct: 237 DLLNAFESEKMYKFIHIPVQSGDENVL 263
>gi|156337861|ref|XP_001619903.1| hypothetical protein NEMVEDRAFT_v1g149881 [Nematostella vectensis]
gi|156203943|gb|EDO27803.1| predicted protein [Nematostella vectensis]
Length = 202
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 91/120 (75%), Gaps = 2/120 (1%)
Query: 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI 261
CL CTYCKTKHARG LGSY E +V R + +GV E+WL+SEDTGAYG+DIGV LP
Sbjct: 1 CLNQCTYCKTKHARGDLGSYPPEEIVNRAKQAFNEGVVEMWLTSEDTGAYGKDIGVTLPE 60
Query: 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
LL +V +P G +RIGMTNPP+ILEHL+E+A++L HP VYSFLHVPVQS S VL+
Sbjct: 61 LLWQLVKVIPEGGR--MRIGMTNPPYILEHLEEMAKILNHPRVYSFLHVPVQSASTNVLA 118
>gi|302806527|ref|XP_002985013.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
gi|300147223|gb|EFJ13888.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
Length = 353
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/157 (59%), Positives = 107/157 (68%), Gaps = 24/157 (15%)
Query: 164 ETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
ETLKGHE RLL R LP+LDLPKVR+NKFVEI+PINVGCLGACTYCKTKHARGHLGSYTV
Sbjct: 24 ETLKGHEARLLRRDALPSLDLPKVRKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTV 83
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
++LV R++TV+++ GRDIG N+P LL A+VA LP
Sbjct: 84 DTLVQRLKTVVSE---------------GRDIGANIPALLRALVAALPHRQK-------Y 121
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
N P + HL HPCVYSFLHV VQSG D+VL
Sbjct: 122 NAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVL 156
>gi|347523463|ref|YP_004781033.1| RNA modification enzyme, MiaB family [Pyrolobus fumarii 1A]
gi|343460345|gb|AEM38781.1| RNA modification enzyme, MiaB family [Pyrolobus fumarii 1A]
Length = 453
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 154/277 (55%), Gaps = 19/277 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N +DS M+ L++ GY + D+ E+AD+ +INTCTV+ ++ M I +
Sbjct: 6 VYIETYGCALNHADSAIMSSVLASRGYTIVDSIEDADVIIINTCTVRLDTEQRMVKRIKE 65
Query: 121 C--KSAK-KPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRL-- 173
K K K +V+AGC+ + L + G +V + R+ VE G E+ +
Sbjct: 66 VWRKYGKSKRIVIAGCLAKAQPYLVKRVAPGAVLVSPGNVHRIYLAVE---SGTELLVED 122
Query: 174 -LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L RK+LP P+ ++ V + I GCL C +C TK AR +L S +E +V V+
Sbjct: 123 PLERKRLP----PRPWKHGVVAEVVIQEGCLSDCAFCITKFARRYLRSQPIEEIVDYVKK 178
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFI 288
++ GV E+ L+ +DT YG DI LP LL I V E P +R+GM +P
Sbjct: 179 LVEAGVVEIRLTGQDTATYGVDIYGKRMLPKLLEEIASVVESPDGCKAYVRVGMMSPDQA 238
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L E+ +++ HPC++ FLH+PVQSG D VL V ++
Sbjct: 239 LPFWDELLDIMSHPCIFKFLHIPVQSGDDRVLRVMRR 275
>gi|330835295|ref|YP_004410023.1| RNA modification protein [Metallosphaera cuprina Ar-4]
gi|329567434|gb|AEB95539.1| RNA modification protein [Metallosphaera cuprina Ar-4]
Length = 418
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 145/264 (54%), Gaps = 13/264 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +T+GC+ N+ D+ M L + + + E AD+ +INTC V+ ++ M I +
Sbjct: 3 VYFETYGCALNKGDTYSMMSLLRERNHEIVETLEGADVVVINTCAVRMETEEKMKKRIRE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K LV+AGC+ L S++G Q I +V+VVE +E + K
Sbjct: 63 LSKTGKKLVIAGCLTGAQPGLVSSLSPSSSMIGPQSISDIVKVVE----SNERVISLDSK 118
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P++ LP+V + + ++PI GC G C +C TK AR +L SY + ++V V+ +I+ G
Sbjct: 119 TPSI-LPRVF-DGLISVIPIEDGCAGNCNFCITKLARRNLRSYPLRNIVETVKRMISQGA 176
Query: 239 KEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ L+ +DT YG D+G V LP ++ + + +G M+R+GM P + HL I
Sbjct: 177 KEIELTGQDTAVYGLDMGGKVTLPDVVKEVAS---LEGDFMIRVGMMTPEMAMRHLDSIL 233
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVL 320
E +P VY F H+PVQSG+D VL
Sbjct: 234 EAWENPKVYKFFHIPVQSGNDKVL 257
>gi|336476780|ref|YP_004615921.1| MiaB-like tRNA modifying protein [Methanosalsum zhilinae DSM 4017]
gi|335930161|gb|AEH60702.1| MiaB-like tRNA modifying enzyme [Methanosalsum zhilinae DSM 4017]
Length = 431
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 156/280 (55%), Gaps = 11/280 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ +GCS NQ+ +E MA +++ +G+ L D+ A +INTCTVKS ++ + I++
Sbjct: 3 VHILNYGCSANQASAEIMAAKINEYGHELVDDESSAQAVVINTCTVKSTTEKKILHRISE 62
Query: 121 CKSAKKPLVVAGCVPQ-GSRDLKELEG----VSIVGVQQIDRVVEVVEETLKG---HEVR 172
++ LVV GC+PQ +D+ E + + + +I ++ ++ + KG +
Sbjct: 63 IGKTERELVVTGCMPQVQMKDIIEANSQAHVLGVNSITEIGNILNKIQNSNKGSVKDRIE 122
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LL L++ ++R N + I I+ GC C+YC + ARG L S+ + +V V+
Sbjct: 123 LLSSVPEGFLNVDRIRHNPNIHICQISQGCNHRCSYCIVRDARGPLTSFDPKDIVDDVKK 182
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
I++G +EVW++S+D G YG DI +LP LLN ++ ++P +R+GM NP +L L
Sbjct: 183 AISEGCREVWITSQDNGQYGADIQSSLPELLN-MLCKIPEHFK--IRVGMMNPFSVLPIL 239
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332
++ + + +Y LH+P+QS S+ LS + K V
Sbjct: 240 DDLIKAFENDKIYKLLHLPIQSASENTLSAMNRNHSMKDV 279
>gi|70606747|ref|YP_255617.1| hypothetical protein Saci_0962 [Sulfolobus acidocaldarius DSM 639]
gi|68567395|gb|AAY80324.1| universally conserved protein [Sulfolobus acidocaldarius DSM 639]
Length = 421
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 148/269 (55%), Gaps = 12/269 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+ DS M L G+ + DN ++A+I +INTC V+ ++ M I +
Sbjct: 3 VYIETYGCALNKGDSYIMMTLLRDKGHEIVDNIQDAEILVINTCAVRLETEERMKQRIKE 62
Query: 121 CKSAK-KPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K K LVVAGC+ + + S++G Q + ++V+VVE + K +V L K
Sbjct: 63 LKKYNDKRLVVAGCLASAEPAVVVSLAPEASVIGPQSVQKIVDVVENS-KQRQVYLNEDK 121
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L PKV K + ILPI GC G C +C TK AR L SY +V VR + G
Sbjct: 122 PLIT---PKVFDGK-IAILPIADGCAGDCNFCITKLARRKLRSYPPHLIVESVRDAVRKG 177
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIA 296
E+ LS +DT AYG D+G I L+ +V ++ +G M+RIGM P + + I
Sbjct: 178 AVEIELSGQDTAAYGLDLG---QIKLSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGII 234
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
EVLR VY F+H+PVQSG D VL + +
Sbjct: 235 EVLRETKVYKFIHLPVQSGDDNVLKLMNR 263
>gi|255514141|gb|EET90403.1| RNA modification enzyme, MiaB family [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 423
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 148/261 (56%), Gaps = 6/261 (2%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+KT+GC+ NQ+DS+ + L + ++ ++AD+ ++NTCTVK+P++ + L+ K
Sbjct: 4 YIKTYGCTLNQADSDIINSVLDSANIGQAESMQDADVIIVNTCTVKNPTEQKISDLLKKL 63
Query: 122 KSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+S K+ ++V GC+ + D+ SIV + ++ + + V T G V + +K
Sbjct: 64 ESEKRKVLVTGCMAAANPDIISNASPSASIVTISNLEDMPDAVSRTASGERVVMSSLQKR 123
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
L K R+ I P++ GC+ +C++C+TK AR L S++ + ++ V+ + G
Sbjct: 124 DRLASFKPRQGPVARI-PVSDGCMSSCSFCETKFARSALNSFSEDLILNAVKYSVKSGAV 182
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++S+D GAYG D N+ +L+ I +G +RIGM NP + ++ E A L
Sbjct: 183 EIDITSQDIGAYGADRKSNIALLMEKIS---RIEGFFKVRIGMLNPERLAGYINEFASAL 239
Query: 300 RHPCVYSFLHVPVQSGSDAVL 320
+ Y F H+P+QSGSD+VL
Sbjct: 240 GNEKFYKFAHLPLQSGSDSVL 260
>gi|21228284|ref|NP_634206.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
gi|20906744|gb|AAM31878.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
Length = 435
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 158/285 (55%), Gaps = 17/285 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEEADIWLINTCTVKSPSQSAMDTLI 118
+Y+++FGCS +Q+ +E M + G+ L +N+ +A++++ N+CTVK ++ + I
Sbjct: 3 VYLESFGCSASQASAEIMKASIGKLGHELLSPENAGQAEVYICNSCTVKYTTEQKILYKI 62
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRV---VEVVEETLK----GH 169
++V+GC+P+ + L I+GV + R+ + +E+ K G
Sbjct: 63 RSMGEKGVQVIVSGCMPEVQLEDILHANPEAHILGVNAVSRLGDLLSTIEQRKKTGIPGG 122
Query: 170 EVRLLHRKKLPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E RL R P L++P+ R N + I I+ GC AC+YC KHARG L S+ E ++
Sbjct: 123 E-RLEIRTSEPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLLSFPPEEII 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+R+ +ADG +E+WL+S+D YG D GV LP LL AI +E+P G +R+GM NP
Sbjct: 182 EDIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLRAI-SEIP--GDFKVRVGMMNPFS 238
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332
+L L ++ + ++ LH+P+QS S +VL ++ SV
Sbjct: 239 VLPILDDLVDAFDSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSV 283
>gi|452210718|ref|YP_007490832.1| 2-methylthioadenine synthetase [Methanosarcina mazei Tuc01]
gi|452100620|gb|AGF97560.1| 2-methylthioadenine synthetase [Methanosarcina mazei Tuc01]
Length = 458
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 160/286 (55%), Gaps = 17/286 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEEADIWLINTCTVKSPSQSAMDTLI 118
+Y+++FGCS +Q+ +E M + G+ L +N+ +A++++ N+CTVK ++ + I
Sbjct: 3 VYLESFGCSASQASAEIMKASIRKLGHELLSPENAGQAEVYICNSCTVKYTTEQKILYKI 62
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEV---VEETLK----GH 169
++V+GC+P+ + L I+GV + R+ ++ +E+ K G
Sbjct: 63 RSMGEKGVQVIVSGCMPEVQLEDILHANPEAHILGVNAVSRLGDLLFTIEQRKKTGIPGG 122
Query: 170 EVRLLHRKKLPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E RL R P L++P+ R N + I I+ GC AC+YC KHARG L S+ E ++
Sbjct: 123 E-RLEIRTSEPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLLSFPPEEIL 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+R+ +ADG +E+WL+S+D YG D GV LP LL AI +E+P G +R+GM NP
Sbjct: 182 EDIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLRAI-SEIP--GDFKVRVGMMNPFS 238
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVS 333
+L L ++ + ++ LH+P+QS S +VL ++ SV+
Sbjct: 239 VLPILDDLVDAFDSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSVN 284
>gi|435850791|ref|YP_007312377.1| MiaB-like tRNA modifying enzyme [Methanomethylovorans hollandica
DSM 15978]
gi|433661421|gb|AGB48847.1| MiaB-like tRNA modifying enzyme [Methanomethylovorans hollandica
DSM 15978]
Length = 433
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 150/271 (55%), Gaps = 15/271 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+ TFGCS NQ+ +E M + + G+ L + + AD+ ++NTCTVK ++ + I +
Sbjct: 3 VYVSTFGCSANQASAEVMMATIRSLGHELV-SEKHADVVVLNTCTVKYSTEQKILHKIRE 61
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVE---------ETLKGH 169
+VVAGC+P+ + ++ I+GV I R+ EV+ +T
Sbjct: 62 LGEKGIEVVVAGCMPEVQLEDIIRNNPDAHILGVNSISRIGEVLNSIASPNLCSQTTSRQ 121
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + + +++P++R N + I ++ GC AC+YC + RG L S+ +S+V
Sbjct: 122 ALHVFSHEPEGFINVPRLRFNSNIHICQLSQGCNNACSYCIVRFVRGPLRSFHPDSIVED 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+R +A+G +E+WL+S+D YG DIG+ LP LL I ++P G +R+GM NP +L
Sbjct: 182 IRQGVAEGCREIWLTSQDNAQYGIDIGLRLPQLLERI-CDIP--GDFKVRVGMMNPFSVL 238
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L+E+ + +Y +H+PVQS S+ VL
Sbjct: 239 PILEELLHAFENDKIYKLVHLPVQSASNDVL 269
>gi|84489190|ref|YP_447422.1| 2-methylthioadenine synthetase [Methanosphaera stadtmanae DSM 3091]
gi|84372509|gb|ABC56779.1| predicted 2-methylthioadenine synthetase [Methanosphaera stadtmanae
DSM 3091]
Length = 424
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 149/267 (55%), Gaps = 13/267 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T GC+ NQ+D++ MA L A Y + + EEAD+ ++NTC VK P++ M T I K
Sbjct: 3 IYLETHGCTFNQADTDIMANIL-AKKYDIVYDVEEADVIILNTCYVKLPTEQKMITKIRK 61
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 174
K+ K L++ GC+ + D K LE + +G ++D+V EVVE+ + G V
Sbjct: 62 YKTEFPDKKLIIGGCMVE--VDDKRLEKFAGDDCWIGPHKLDKVDEVVEKAINGEVVHEY 119
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ + K V IL I GC G CT+C T+ ARG L SY ++ +V + +
Sbjct: 120 GKTRAIKAGKGKKNSESLVHILQICEGCNGQCTFCCTRIARGFLISYPIDVIVEEAKDAV 179
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
G KE+ ++++DT +G D G + LLN + A +G +R+GM NP I L E
Sbjct: 180 EHGCKELQVTAQDTACFGMDTGESFADLLNKLGA---IEGDFRIRVGMMNPQSIKNQLHE 236
Query: 295 IAEVLR-HPCVYSFLHVPVQSGSDAVL 320
+ + + + +++F+H+P+QSGS VL
Sbjct: 237 VIDAFKNNDKIFNFVHLPIQSGSPKVL 263
>gi|327400612|ref|YP_004341451.1| MiaB family RNA modification protein [Archaeoglobus veneficus SNP6]
gi|327316120|gb|AEA46736.1| RNA modification enzyme, MiaB family [Archaeoglobus veneficus SNP6]
Length = 417
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 148/261 (56%), Gaps = 7/261 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ ++T+GC+ NQ+DS+ + ++S + L+ + E+AD+ +IN+C V ++ + +
Sbjct: 3 VAIETYGCTMNQADSDIIRAEVSR-EFELS-SVEDADVVVINSCGVIDYTERKILNRARQ 60
Query: 121 CKSAKKPLVVAGCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ K +V+AGC+P+ + + E+ +I + R+ EV++ + G+++ LL + ++
Sbjct: 61 LRQMGKTVVMAGCLPRIAKKKVMEVANAAI-SPDNVHRIDEVIKAAVSGNKLFLLDKSEI 119
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
K R + I+ I GC G CT+C T+ ARG L S++ + +V ++ + G
Sbjct: 120 DKTRCEKQRMAGGIAIVSIAEGCTGRCTFCATRFARGRLRSFSPDGIVEEIKKAVRAGYV 179
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ L+S+DTGAYG DIG NLP LL I A +G +R+GM NP L ++
Sbjct: 180 EIQLTSQDTGAYGHDIGTNLPDLLEKISA---IEGMFRVRVGMMNPRHAYSMLDDLLNAF 236
Query: 300 RHPCVYSFLHVPVQSGSDAVL 320
+Y FLH+PVQSG + VL
Sbjct: 237 ESEKIYKFLHLPVQSGDEKVL 257
>gi|332797846|ref|YP_004459346.1| MiaB family RNA modification protein [Acidianus hospitalis W1]
gi|332695581|gb|AEE95048.1| RNA modification enzyme, MiaB family [Acidianus hospitalis W1]
Length = 417
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 147/269 (54%), Gaps = 14/269 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +T+GC+ N+ D+ M L + + +N EAD+ ++NTC V+ + M + I +
Sbjct: 3 VYFETYGCALNKGDTYIMMTLLKQRNHEIVNNPNEADVIVLNTCDVRLETGERMKSRIKE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ K LVVAGC + + SI+G Q + ++++ VE G ++ ++ ++
Sbjct: 63 LRKFGKKLVVAGCFSGAEPGVVKTLAPEASIIGPQALTKIIDAVE----GEKIFSINAER 118
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P+V K + I+PI GC G C++C TK AR L SY++ S+V V+ + +G
Sbjct: 119 SEIT--PRVFEGK-IAIIPIADGCAGDCSFCITKLARRTLRSYSMRSIVEAVKEAVKNGA 175
Query: 239 KEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
EV L+ +D AYG D+G + L LLN + L +G M+RIGM P + I
Sbjct: 176 VEVELTGQDAAAYGLDLGGKIKLSDLLNEV---LSIEGDFMIRIGMMTPEQFARDIDGIL 232
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
E +R+P ++ FLH+PVQSG D VL + +
Sbjct: 233 EAMRNPKLFKFLHLPVQSGDDNVLKLMNR 261
>gi|146303440|ref|YP_001190756.1| RNA modification protein [Metallosphaera sedula DSM 5348]
gi|145701690|gb|ABP94832.1| RNA modification enzyme, MiaB family [Metallosphaera sedula DSM
5348]
Length = 418
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 142/268 (52%), Gaps = 11/268 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY +T+GC+ N+ D+ M L + + ++ E+AD+ +INTC V+ ++ M I +
Sbjct: 3 IYFETYGCALNKGDTYSMMTLLKGRNHEIVNSEEQADVLVINTCAVRMETEEKMKKRILE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K LVVAGC+ L S++G Q I VV+ VE + LH +
Sbjct: 63 LSKTGKKLVVAGCLAGAEPGLVMSLAPQSSLIGPQSIGDVVKAVESR---ERIVSLH-GE 118
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
LP++ LP V + ++PI GC G+C +C TK AR L SY +V R I G
Sbjct: 119 LPSV-LPSVFEG-LISVIPIADGCAGSCNFCITKLARKELRSYPPRMIVETARKAIEKGA 176
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ L+ +DT AYG D+G + I L +V E+ +G M+R+GM P + L ++ +
Sbjct: 177 KEIELTGQDTAAYGLDLGRD--IRLADLVGEVSSLEGDFMVRVGMMTPELAMRQLDDLLD 234
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+P VY F H+PVQSG+D VL +
Sbjct: 235 AWDNPKVYKFFHLPVQSGNDQVLRAMNR 262
>gi|298675805|ref|YP_003727555.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
Z-7303]
gi|298288793|gb|ADI74759.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
Z-7303]
Length = 433
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 149/271 (54%), Gaps = 15/271 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ T+GC +Q+ SE M + G+ L D + AD+ + NTCTVK ++ + I +
Sbjct: 3 VHVATYGCPSSQAASEIMMDAIKRQGHELVD-EKSADVVVFNTCTVKYTTEQKILHKIGE 61
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVE--ETLK-----GHEV 171
+VV+GC+P+ D L + I+GV I R+ EV++ E K G +
Sbjct: 62 LGRKGLEVVVSGCMPEVQHDDILDNNQDAHILGVNSITRINEVLDSIENAKNKNNSGRRL 121
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ + L+ P+ R N+ + I I+ GC C YC + ARG L S+ ++S+V VR
Sbjct: 122 EIFSSRPDDILNAPRTRFNQNIHICQISQGCNNRCAYCVVRTARGKLKSFDIDSIVEDVR 181
Query: 232 TVIADGVKEVWLSSEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+++G +E+W++S+D YG R GV LP LL+ + + +G+ +R+GM NP +
Sbjct: 182 KAVSEGCREIWITSQDNAQYGIDRQNGVLLPQLLDRVAS---IEGNFKIRVGMMNPFSVY 238
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L ++ +V + +Y FLH+P+QS S+ VL
Sbjct: 239 PILDDLLKVYENNKIYKFLHLPIQSASEKVL 269
>gi|385806199|ref|YP_005842597.1| MiaB family RNA modification protein [Fervidicoccus fontis Kam940]
gi|383796062|gb|AFH43145.1| RNA modification enzyme, MiaB family [Fervidicoccus fontis Kam940]
Length = 425
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 141/268 (52%), Gaps = 14/268 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++KTFGC+ N+SDSE M L + G+ DN E AD+ ++NTCTV+ S I K
Sbjct: 3 FFIKTFGCALNRSDSELMREILISRGFEEIDNLENADVIIVNTCTVRKDSDQKAIEYIEK 62
Query: 121 CKSAKK--PLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
K K +VVAGC+P L ++ + +R+V+ + +E L
Sbjct: 63 VKQLNKNSKIVVAGCIPGSQPYLIKSRFPDAVLISPYETNRIVDAI-----FYETDFLGY 117
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
++ ++P V+ + I+P+N GCL C +C TK AR L S + ++ ++ ++ +
Sbjct: 118 EEFKRYNVPIVKTGN-IAIVPLNDGCLSNCNFCITKVARRRLLSRMPKVILKAIKDLVEN 176
Query: 237 GVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
GV E+ LSS+D YG D LP L+ I E+ G MLRI M NP + + L+
Sbjct: 177 GVYEIQLSSQDASVYGIDFKGRPLLPDLVETINQEIK--GEYMLRIAMMNPDGVKKDLEN 234
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
++ + V+ FLH+P+QSG D VL +
Sbjct: 235 FVKIFEYEHVFKFLHLPIQSGDDEVLKI 262
>gi|20090019|ref|NP_616094.1| 2-methylthioadenine synthetase [Methanosarcina acetivorans C2A]
gi|19914987|gb|AAM04574.1| 2-methylthioadenine synthase [Methanosarcina acetivorans C2A]
Length = 435
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 148/272 (54%), Gaps = 15/272 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE--EADIWLINTCTVKSPSQSAMDTLI 118
+Y+++FGCS + + +E M + G+ L + + EA++++ N+CTVK ++ + I
Sbjct: 3 VYLESFGCSASLASAEIMKASVERLGHELLNPAAAGEAEVYICNSCTVKYTTEQKILYKI 62
Query: 119 AKCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLK--------G 168
++V+GC+P Q L I+GV I R+ E++ + G
Sbjct: 63 RSMGEKGVQVIVSGCMPEVQLEEILHANPEAHILGVNAISRLGELLSSIEQRRMEGLPAG 122
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ L + L L++P+ R N + I I+ GC AC+YC KHARG L S+ E +V
Sbjct: 123 GHLELRTSEPLGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLRSFPPEKIVK 182
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R+ +ADG +E+WL+S+D YG D GV LP LL +++E+P G +R+GM NP +
Sbjct: 183 DIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLR-MISEIP--GDFKVRVGMMNPFSV 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L L + + V+ LH+P+QS S +VL
Sbjct: 240 LPILDGLVDAFDSDKVFKLLHLPIQSASHSVL 271
>gi|302817030|ref|XP_002990192.1| hypothetical protein SELMODRAFT_428637 [Selaginella moellendorffii]
gi|300142047|gb|EFJ08752.1| hypothetical protein SELMODRAFT_428637 [Selaginella moellendorffii]
Length = 135
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/140 (55%), Positives = 97/140 (69%), Gaps = 11/140 (7%)
Query: 88 ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGV 147
A++D+ + AD+WLINTCT+K+P+ M+TLI K K+A PLV + G + +
Sbjct: 2 AISDSPQRADLWLINTCTLKAPT---METLICKGKAASIPLVDSWMRSSGFKRSRSH--- 55
Query: 148 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
Q+ ETLKGHE LL R LP+LDLPKVR+NKFVEI+PINVGCLGACT
Sbjct: 56 -----QRHRSAANTAGETLKGHEAWLLQRDALPSLDLPKVRKNKFVEIIPINVGCLGACT 110
Query: 208 YCKTKHARGHLGSYTVESLV 227
YCK KHARGHLGSYTV++L+
Sbjct: 111 YCKMKHARGHLGSYTVDALI 130
>gi|315424979|dbj|BAJ46654.1| tRNA modifying enzyme [Candidatus Caldiarchaeum subterraneum]
gi|343484572|dbj|BAJ50226.1| 2-methylthioadenine synthase [Candidatus Caldiarchaeum
subterraneum]
Length = 432
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 142/264 (53%), Gaps = 11/264 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ +Y + +GCS NQ+D E G L GY + + EAD ++ TC VK P+ M I
Sbjct: 12 QKVYAEVYGCSANQADGEIALGILQKQGYIMVERPNEADYVVLVTCAVKKPTADRMIHRI 71
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K S L+VAGC+ G + + + V+ V R + V ++GH K
Sbjct: 72 KKFSSLGPRLIVAGCMATG--EAERVRRVAPEAVLLPPRSITEVSAAIEGHGFDGGGTK- 128
Query: 179 LPALDLPKVRRNKFVEILPINVGC-LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LP++R+N + I+P++ GC C++C +R SY V ++V VR + +G
Sbjct: 129 ---LGLPRLRKNPVIAIVPVSEGCRWSRCSFCIVPRSRPGYESYPVRAVVDEVRKAVNEG 185
Query: 238 VKEVWLSSEDTGAYGRDIGVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
+EVWL+S+D G+YG + G N LP L+ ++ + +G RIGM NP ++ L+++
Sbjct: 186 CREVWLTSQDMGSYGLESGRNLLPELIESVNSL---EGKFYTRIGMMNPIYLKPILQKLV 242
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVL 320
+ +Y F+HVPVQSGSD VL
Sbjct: 243 KAYSGEKIYKFIHVPVQSGSDKVL 266
>gi|91773329|ref|YP_566021.1| MiaB-like tRNA modifying enzyme [Methanococcoides burtonii DSM
6242]
gi|91712344|gb|ABE52271.1| Radical SAM family protein with UPF0004 and MiaB-like domains
[Methanococcoides burtonii DSM 6242]
Length = 430
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 143/268 (53%), Gaps = 12/268 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ T+GCS NQ+ SE M + GY L D + A++ +INTCTVK ++ + I
Sbjct: 3 VHITTYGCSANQASSEIMIASVRDLGYELVDEMD-AEVVVINTCTVKYTTEQKILHKIED 61
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEV---VEETLK---GHEVR 172
+ +VV GC+PQ + L+ I+GV I ++ +V +E + K V
Sbjct: 62 LGAKGIDVVVTGCMPQVQLETILERNPDAHILGVNSIAKIGQVLRSIENSCKVGSRERVE 121
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L+ + L R N + I I+ GC +C YC ARG L S+ +S+V +R
Sbjct: 122 LITSEPEGFLKTAHSRFNPNIHICQISQGCDYSCAYCIVTIARGKLRSFDADSIVEDIRM 181
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ +G +E+WL+S+D G YG D V LP LL IVA +P G +R+GM NP + L
Sbjct: 182 AVDEGCREIWLTSQDNGQYGTDRDVLLPELLRRIVA-IP--GDFKIRVGMMNPFSVTPIL 238
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++ EV R +Y +H+P+QS SD VL
Sbjct: 239 DDLIEVFRSDKIYKIVHLPIQSASDNVL 266
>gi|147919729|ref|YP_686525.1| putative 2-methylthioadenine synthetase [Methanocella arvoryzae
MRE50]
gi|110621921|emb|CAJ37199.1| putative 2-methylthioadenine synthetase [Methanocella arvoryzae
MRE50]
Length = 404
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/270 (36%), Positives = 146/270 (54%), Gaps = 26/270 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T +Y++T+GC+ N++DS + + A G A+ + EEAD+ ++NTC V + ++M L
Sbjct: 2 TMRVYIETYGCTANEADSAGIRDAVLASGGAIASSPEEADVIVVNTCAVTGHTANSM--L 59
Query: 118 IAKCKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
A + K ++VAGC V + R LK E V G + VR L
Sbjct: 60 RAVSRFPGKRVLVAGCLAVAEPGR-LKGYEFVDGPGSLPV---------------VRALG 103
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ L + R ++I GC G C+YC + RG + S +V R IA
Sbjct: 104 LRPEAGLSIAMTGRTATIKIAE---GCNGQCSYCIVRLVRGRIRSTPAPDIVEAARRAIA 160
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G E++L+S+D+GAYG D GV LP L+ +I A LP G+ +RIGM NP I + L ++
Sbjct: 161 EGASELFLTSQDSGAYGLDTGVRLPTLIRSI-ASLP--GNFKVRIGMMNPFSIADILPDM 217
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+VL HP VY F H+PVQSGSD +L + Q+
Sbjct: 218 VDVLNHPKVYRFAHIPVQSGSDRILKLMQR 247
>gi|45357975|ref|NP_987532.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis S2]
gi|44920732|emb|CAF29968.1| Protein of unknown function UPF0004:Deoxyribonuclease/rho
motif-related TRAM [Methanococcus maripaludis S2]
Length = 425
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 147/269 (54%), Gaps = 13/269 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D++ + ++ F + LTDN +++DI +INTC V+ ++ M + I
Sbjct: 3 IYIEGYGCTLNTADTQIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 171
KS K +VVAGC+ + S+ ++ L V I+ G D++++ E
Sbjct: 63 YFKSLDKKVVVAGCMAKALSKKIENLADVLIMPREAQHSGNILKDKLLKDFSEKNNESTQ 122
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L KL + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 123 NLNFEDKLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAE 181
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F
Sbjct: 182 ELVKSGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L E+ E + V FLH+P+QSG D VL
Sbjct: 239 LDELIESFKSEKVVKFLHLPIQSGDDQVL 267
>gi|156938206|ref|YP_001436002.1| RNA modification protein [Ignicoccus hospitalis KIN4/I]
gi|156567190|gb|ABU82595.1| RNA modification enzyme, MiaB family [Ignicoccus hospitalis KIN4/I]
Length = 423
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 141/264 (53%), Gaps = 9/264 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY +T+GC+ ++E + +L + GY + EEAD +I TCTV+S ++ M I +
Sbjct: 3 IYYETYGCAVMLGEAERVLEELKSKGYEVVGRPEEADASIIFTCTVRSETEQRMAWRIKE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
A K L+V GC+ L ++ SIV + + E LKG + LL ++
Sbjct: 63 LCKASKKLIVTGCLASAQPGLVKMVCPRASIVSNSSLHEI----ELALKGEKKYLLKGQR 118
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P L V F ++PI GCLG CT+C TK AR L S +S++ + G
Sbjct: 119 -PRDWLKGVTPGGFRVVIPIADGCLGNCTFCITKVARPRLVSQRPDSIIEYALKGVKRGA 177
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+WL++ D AYG++IG+ LP LL ++ LP + +R+GM +P E + +V
Sbjct: 178 KEIWLTAPDVAAYGKEIGLELPDLLEKLLKVLPEN--VYVRVGMMSPDTFREVMDRTIDV 235
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSV 322
+R P V+ F H+P+QS SD VL +
Sbjct: 236 MRDPRVFKFFHLPLQSASDKVLRL 259
>gi|73669341|ref|YP_305356.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
gi|72396503|gb|AAZ70776.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
Length = 442
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 150/272 (55%), Gaps = 15/272 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEEADIWLINTCTVKSPSQSAMDTLI 118
+Y+++FGCS +Q+ +E M + G+ L + +++A++++ N+CTVK ++ + I
Sbjct: 3 VYLESFGCSASQASAEIMKASVERLGHKLLGPEAADQAEVYICNSCTVKYTTEQKILYKI 62
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVV----EETLKG---- 168
++V+GC+P+ + L I+GV I R+ E++ + +KG
Sbjct: 63 RSMGEKNVEVIVSGCMPEVQLEDILHANPEAHILGVNAISRLGELLSLIEQRKMKGLPGG 122
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + + L++P+ R N + I I+ GC AC+YC K+ARG L S+ +V
Sbjct: 123 EHLEFRASEPVGFLNVPRERSNPNIHICQISQGCNFACSYCIVKYARGKLHSFPPNDIVE 182
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R +A G +E+WL+S+D YG D GV LP LL +++E+P G +R+GM NP +
Sbjct: 183 DIRAAVAGGCREIWLTSQDDSQYGMDTGVRLPELLR-MISEIP--GDFKVRVGMMNPFSV 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L L ++ + V+ LH+P+QS S +VL
Sbjct: 240 LPILDDLVDAFDSDKVFKLLHLPIQSASHSVL 271
>gi|256811070|ref|YP_003128439.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
gi|256794270|gb|ACV24939.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
Length = 418
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 149/273 (54%), Gaps = 27/273 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC N +D+E + L G+ L DN EEADI +INTC V+ +++ M I +
Sbjct: 5 VYVEGYGCVLNTADTEIIKNSLKEAGFKLVDNLEEADIVVINTCVVRLETENRMIYRINE 64
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH--------EVR 172
K+ K +VVAGC+P+ ++ +++ + ++ + E++ ++ H E+
Sbjct: 65 LKNLGKEVVVAGCLPKALKN--KVKDFLHIYPRESYKAGEILRYYIEKHYRMPYIEEEIN 122
Query: 173 LLHRKKL----PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
KKL P+L P LPI GCLG C+YC K ARG L SY E +V
Sbjct: 123 KTLYKKLDYLKPSLITP----------LPICEGCLGNCSYCIVKIARGKLISYPREKIVN 172
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + +I GVK ++++++DT YG DIG NL LLN + +G ++R+GM + +
Sbjct: 173 KAKELINKGVKCLFITAQDTACYGFDIGDNLANLLNDLT---QIEGEFIMRVGMMHAKNV 229
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
L E+ E ++ V FLH+P+QSG D +L
Sbjct: 230 EPILDELIEAYQNEKVGKFLHLPLQSGDDEILK 262
>gi|124027960|ref|YP_001013280.1| hypothetical protein Hbut_1092 [Hyperthermus butylicus DSM 5456]
gi|123978654|gb|ABM80935.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
Length = 441
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 151/279 (54%), Gaps = 24/279 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N +D+ M LS+ GY+ T+ +EAD+ +INTCTV+ +++ M IA+
Sbjct: 6 VYIETYGCALNMADTAIMRSVLSSRGYSFTNCVDEADVIIINTCTVRLDTEARMKRRIAE 65
Query: 121 CKSAKKP----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
+ + LVVAGC+ R + VS V +D VE +G ++
Sbjct: 66 LAAIAEKTGARLVVAGCMASAQPYTVKRIAPKAVLVSTYNVHLVDIAVE------RGLDL 119
Query: 172 RLLHRKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
R+K L P R R K E+ PI GCLG C++C TK AR + S VE++V
Sbjct: 120 LTPPREKPKPLFKPTPRLMLRGKIAEV-PIAEGCLGDCSFCITKIARRRVYSRPVENIVK 178
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPP 286
VR ++ G E+ L+ +D YG D+ LP L+ ++ +G M+RIGM +P
Sbjct: 179 LVRELVRLGAVEIRLTGQDIAVYGIDLYGKRLLPELVRRVIE---VEGDFMVRIGMMSPD 235
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ L E EV RHP V+ F+H+PVQSG D VL + ++
Sbjct: 236 QLEPILDEFLEVFRHPKVFKFVHLPVQSGDDRVLRIMKR 274
>gi|374632057|ref|ZP_09704431.1| MiaB-like tRNA modifying enzyme [Metallosphaera yellowstonensis
MK1]
gi|373525887|gb|EHP70667.1| MiaB-like tRNA modifying enzyme [Metallosphaera yellowstonensis
MK1]
Length = 418
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 140/266 (52%), Gaps = 13/266 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +T+GC+ N+ D+ M L + LT++ AD+ +INTCTV+ ++ M I +
Sbjct: 3 VYFETYGCTLNKGDTLTMMSLLRERKHQLTNDISSADVIVINTCTVRMETEEKMKKRIKE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
S K LVVAGC+ L S++G Q ++ VV+ VE + R++
Sbjct: 63 LVSTGKKLVVAGCLAGAEPALVTSLAPSASLIGPQSLESVVKAVE-----GDSRVVEIGS 117
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LPKV + ++PI GC G C +C TK AR L SY++ ++ V+ + G
Sbjct: 118 KPPTLLPKVHEG-LIAVIPIADGCAGHCNFCITKLARRILRSYSMRAIKEAVQESVRRGA 176
Query: 239 KEVWLSSEDTGAY--GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ L+ +DT AY V LP L+ I + +G M+R+GM P + L EI
Sbjct: 177 KEIELTGQDTAAYGLDLGGLVGLPDLVREISS---VEGDFMIRVGMMTPDLAMRRLDEII 233
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSV 322
E HP VY F H+PVQSG+D VL +
Sbjct: 234 EAWSHPKVYKFFHIPVQSGNDRVLRL 259
>gi|351702084|gb|EHB05003.1| CDK5 regulatory subunit-associated protein 1-like 1 [Heterocephalus
glaber]
Length = 298
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 105/167 (62%), Gaps = 5/167 (2%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F V PK + P+ + S S IPG +
Sbjct: 10 LDDIEDIVSQEDSKPQDRHF----ARRHVVPKVRRRNPQTYLQEESSPPRDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N EAD+WL+N+CTVK P++ I +
Sbjct: 65 IWIQTWGCSHNNSDGEYMAGQLAAYGYTITENPSEADLWLLNSCTVKKPTEDHFRNSIKR 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK 167
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+K
Sbjct: 125 AQEENKKVVLAGCVPQAQPHQDYLKGLSIIGVQQIDRVVEVVEETIK 171
>gi|289192765|ref|YP_003458706.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
gi|288939215|gb|ADC69970.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
Length = 415
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 149/268 (55%), Gaps = 17/268 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC N +D+E + L G+ +T++ EEA+I +INTC V+ +++ M I +
Sbjct: 3 VYVEGYGCVLNTADTEIIKNSLREHGFEITEDLEEANIAIINTCVVRLETENRMIYRINE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K+ K +V+AGC+P+ ++ +++G + ++ R E++++ ++ H +R
Sbjct: 63 LKNLGKEVVIAGCLPKALKE--KVKGFLHIYPREAHRAGEILKDYIEKH-----YRMPYI 115
Query: 181 ALDLPKVRRNKF-------VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
D+ K K + LPI GC+G C+YC K ARG+L SY E +V + + +
Sbjct: 116 EEDINKTLYKKLDYLTPSLISPLPICEGCIGNCSYCIVKIARGNLISYPREKIVNKAKEL 175
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I G K + ++++DT YG DIG NL LLN + +G ++R+GM + L
Sbjct: 176 INKGAKCLLITAQDTACYGFDIGDNLANLLNDLT---QIEGEFIMRVGMMHAKNAELILD 232
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
E+ EV + V FLH+P+QSG D +L
Sbjct: 233 ELIEVYKDDKVGKFLHLPLQSGDDEILK 260
>gi|383319340|ref|YP_005380181.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanocella
conradii HZ254]
gi|379320710|gb|AFC99662.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanocella
conradii HZ254]
Length = 407
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 137/264 (51%), Gaps = 23/264 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N DS M + A G + + +EAD+ +INTC V P+ M L A
Sbjct: 3 VYIETYGCTANMGDSHRMRSSIQAAGCCVAERPDEADVIIINTCAVTEPTSRGM--LKAI 60
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K K ++VAGC+ L E G V G E +K +R +H K
Sbjct: 61 KKYEDKRVIVAGCMAAAQPYLLEGLGGNVECAGAPG-------AEAAMKLLGIRPVHGKP 113
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L I+ I GC+G CTYC + ARG L S S+ V+ + G
Sbjct: 114 L---------LKGKTAIISIAEGCVGKCTYCIVRLARGTLRSAPPASIKKSVKDALEMGA 164
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE++L+++DTGAYG DIG+ LP L++ + L +G +R+GM NP I + L ++ +
Sbjct: 165 KEIFLTAQDTGAYGIDIGIRLPKLMHDM---LGIEGDYRVRLGMMNPFSIADILDDVIRI 221
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSV 322
+ P VY F H+P+QSGSD +L +
Sbjct: 222 FQDPHVYKFAHIPIQSGSDRILRL 245
>gi|340623599|ref|YP_004742052.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis X1]
gi|339903867|gb|AEK19309.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis X1]
Length = 425
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 147/269 (54%), Gaps = 13/269 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D++ + ++ F + LTDN +++DI +INTC V+ ++ M + I
Sbjct: 3 IYIEGYGCTLNTADTQIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 171
KS K +VVAGC+ + S+ ++ L V I+ G D++++ E
Sbjct: 63 YFKSLDKKVVVAGCMAKALSKKIENLADVLIMPREAQHSGNILKDKLLKDCSEKNNESTQ 122
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L KL + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 123 NLNFEDKLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAE 181
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F
Sbjct: 182 ELVKSGTKCLLVTAQDTACYGLDNSDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L E+ E + V FLH+P+QSG + VL
Sbjct: 239 LDELIESFKSEKVVKFLHLPIQSGDNQVL 267
>gi|374635310|ref|ZP_09706912.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
gi|373562898|gb|EHP89103.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
Length = 417
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 148/271 (54%), Gaps = 18/271 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++ +GC+ N +D+ + L F + +TDN E+AD+ +INTC V+ +++ M I
Sbjct: 8 IYVEGYGCTLNIADTNIIENSLKEFNFEITDNVEDADLVIINTCVVRLETENRMFARINY 67
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG---HEVRLLHRK 177
KS K +VVAGC+ + + K++E ++ D ++ E L G HE + K
Sbjct: 68 FKSLDKKVVVAGCLAKALK--KKVENLA-------DLLIMPREAHLSGEIIHEHFVEKNK 118
Query: 178 KLPALDLPKVRRN---KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
K ++L + + + LPI GC+G C+YC K ARG L SY+ E +V + +I
Sbjct: 119 KENTINLEEKLKYISPSLITPLPICEGCIGECSYCIVKVARGRLISYSREKIVKKAEELI 178
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
G K + ++++DT YG DI NLP L+N + + +G ++RIGM + + + L +
Sbjct: 179 NSGTKCLLITAQDTACYGFDINDNLPNLINDLCS---INGEFIMRIGMMHAKNVGDILDD 235
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E + V LH+P+QSG D VL ++
Sbjct: 236 LIEAYKDEKVAKLLHLPLQSGDDGVLKAMKR 266
>gi|159111403|ref|XP_001705933.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
gi|157434024|gb|EDO78259.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
Length = 525
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 161/335 (48%), Gaps = 56/335 (16%)
Query: 45 LSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT---------DNSEE 95
L+ S SP + + M T GC HN ++S+ +A L G +T +++ +
Sbjct: 11 LAHAQSTSPLLTNVR-VMMVTMGCGHNAAESDIIASALQTAGAVITHSNGKYITPESARD 69
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS-------RDLKELEGVS 148
D+ IN+CTVK+PS+ + K +V+ GCVPQ R + +
Sbjct: 70 VDVLYINSCTVKNPSEDKAFVHVQKGLEVGTVVVLGGCVPQSYGTVNDELRKASAAKQLI 129
Query: 149 IVGV---QQIDRVVEVVEETLKGHEVRLLHRKKLPALDL--------------------- 184
I GV Q + + ++ E + H + H + PAL +
Sbjct: 130 ISGVLTQQWLAALPRLLREAIDLHILNNSHLLQ-PALRMTQPSDKAGVPAAISYVTKEAT 188
Query: 185 -----------PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
P R N ++I+ GC+G+CTYCKT H+RG L S +++L+ R+R+
Sbjct: 189 KDVEVEYLKCTPVHRANPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSS 248
Query: 234 IADG-VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILE 290
+AD ++E+WL+ EDT A+GR+ +LL + + T ML+IGMT+P ++
Sbjct: 249 LADPIIRELWLTGEDTLAWGRESDATFAVLLQEVQKLFETENPTHKMLKIGMTDPDSVIN 308
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ +R VY FLH+PVQSGSD +L++ ++
Sbjct: 309 QEDSLISFMRCKYVYKFLHLPVQSGSDRILTLMRR 343
>gi|134046253|ref|YP_001097738.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C5]
gi|132663878|gb|ABO35524.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C5]
Length = 425
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 148/269 (55%), Gaps = 13/269 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D+E + ++ F + LTDN +++DI +INTC V+ ++ M + I
Sbjct: 3 IYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETL-------KGHEV 171
KS K +VVAGC+ + + +K L V +V ++ +++++ L G
Sbjct: 63 YFKSLDKKVVVAGCMAKALPKKIKTLADV-LVMPREAQYSGKILKDNLLKGCSEKNGKSN 121
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L+ + + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 122 ENLNFEDQLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAE 181
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F
Sbjct: 182 ELVKTGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L E+ E + V FLH+P+QSG D VL
Sbjct: 239 LDELIESFKSKKVVKFLHLPIQSGDDQVL 267
>gi|386001450|ref|YP_005919749.1| MiaB-like tRNA modifying enzyme [Methanosaeta harundinacea 6Ac]
gi|357209506|gb|AET64126.1| MiaB-like tRNA modifying enzyme [Methanosaeta harundinacea 6Ac]
Length = 430
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 153/281 (54%), Gaps = 29/281 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC+ N+ +SE A L G+ + + EEAD+ ++NTC V ++ + +++
Sbjct: 22 FYIETYGCAANRGNSEAFASALVEAGHRRS-SQEEADLVIVNTCAVTERTERDIRRRLSE 80
Query: 121 CKSAKKPLVVAGC----VPQGSRDLKELEGVSIVGVQQIDRVVEVV--EETLKGHEVRLL 174
+ + L+VAGC +P+ RDL+ E + I+ R+ E E L G
Sbjct: 81 LQGER--LIVAGCLPSAIPEAVRDLRCREVLGILSAPSGRRIGEAFPPEPELAGS----- 133
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
++ R+ ++ I+ GCLG+C+YC + ARG L S TV+ + VR +
Sbjct: 134 ----------GRMTRD-LCAVVNISEGCLGSCSYCIVRRARGPLRSRTVQEVAEEVRRRL 182
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+G EV L+S+D AYG D+G +LP L++A VAE+ +G +R+GM NP + L+E
Sbjct: 183 KEGAVEVQLASQDAAAYGLDLGSSLPELIDA-VAEI--EGDFRIRVGMMNPGQVKPILEE 239
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL-SVSQKIVPTKSVSL 334
+ P VY FLH+PVQSGS VL S+ + P +S+
Sbjct: 240 LIRSYDDPKVYKFLHLPVQSGSAEVLRSMRRGYTPQDFLSM 280
>gi|308162206|gb|EFO64615.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia P15]
Length = 525
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 158/319 (49%), Gaps = 55/319 (17%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFG---------YALTDNSEEADIWLINTCTVKSPSQ 111
+ M T GC HN ++S+ +A L G Y +++++ D+ IN+CTVK+PS+
Sbjct: 26 VMMVTMGCGHNAAESDIIASALQTAGAVIIHSNGKYITPESAKDVDVLYINSCTVKNPSE 85
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQG----SRDLKELEG---VSIVGV---QQIDRVVEV 161
+ K +V+ GCVPQ S +L++ + I GV Q + + +
Sbjct: 86 DKAFVHVQKGLEVGTVVVLGGCVPQSYGAMSDELRKASASKQLIISGVLTQQWLTALPGL 145
Query: 162 VEETLKGHEVRLLHRKKLPALDL--------------------------------PKVRR 189
+ E + H + H + PAL + P R
Sbjct: 146 LREAIDFHILNTSHVLQ-PALRMTQPSSKAGVSAAISYVTKEATKDVDVEYLKCTPVHRA 204
Query: 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV-KEVWLSSEDT 248
N ++I+ GC+G+CTYCKT H+RG L S +++L+ R+R +AD V +E+WL+ EDT
Sbjct: 205 NPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLTRIRNSLADPVIRELWLTGEDT 264
Query: 249 GAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306
A+GR+ G LL + L + T ML+IGMT+P I+ +A + VY
Sbjct: 265 LAWGRESGTTFAGLLQEVQKLLETENPTHKMLKIGMTDPDSIINQEDSLASFICCKYVYK 324
Query: 307 FLHVPVQSGSDAVLSVSQK 325
FLH+PVQSGSD +L++ ++
Sbjct: 325 FLHLPVQSGSDRILTLMRR 343
>gi|15669058|ref|NP_247862.1| hypothetical protein MJ_0867 [Methanocaldococcus jannaschii DSM
2661]
gi|2501543|sp|Q58277.1|AMTAB_METJA RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|1591550|gb|AAB98872.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 427
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 146/268 (54%), Gaps = 17/268 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC N +D+E + L G+ + +N EEADI +INTC V+ +++ M I +
Sbjct: 14 VYVEGYGCVLNTADTEIIKNSLKKHGFEVVNNLEEADIAIINTCVVRLETENRMIYRINE 73
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K+ K +VVAGC+P+ ++ +++G + ++ + E+++ ++ H +R
Sbjct: 74 LKNLGKEVVVAGCLPKALKN--KVKGFLHIYPREAHKAGEILKNYVEKH-----YRMPYI 126
Query: 181 ALDLPKVRRNKF-------VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
D+ K K + LPI GC+G C+YC K ARG L SY E +V + + +
Sbjct: 127 EEDINKTLYKKLDYLKPSLITPLPICEGCIGNCSYCIVKIARGGLISYPREKIVNKAKEL 186
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I G K + ++++DT YG DIG NL LLN + G ++R+GM + L
Sbjct: 187 INKGAKCLLITAQDTACYGFDIGDNLANLLNELT---QIKGEFIMRVGMMHAKNAELILD 243
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
E+ EV ++ V FLH+P+QSG D +L
Sbjct: 244 ELIEVYQNEKVGKFLHLPLQSGDDEILK 271
>gi|307595884|ref|YP_003902201.1| MiaB family RNA modification enzyme [Vulcanisaeta distributa DSM
14429]
gi|307551085|gb|ADN51150.1| RNA modification enzyme, MiaB family [Vulcanisaeta distributa DSM
14429]
Length = 452
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 19/272 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DS+ M +L + G+ T++ E AD ++NTC V+ ++ L+ +
Sbjct: 9 TFGCWLNKADSDIMITKLRSLGWEYTEDVESADTIIVNTCAVREEAERNELKLLKRLSEE 68
Query: 125 K--KPLVVAGCV----PQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K L+VAGC+ P +D+ +S G + ID EVV H K
Sbjct: 69 YPGKRLIVAGCLTRIRPATIKDVSPNAMLISSHGAELID---EVVSSNTDVHVYEDRPAK 125
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVI 234
LP P++ +++V +PI VGCLG C++C TK R G + SY ++ +V + +
Sbjct: 126 YLPNY-YPELHGHRYV--VPIQVGCLGNCSFCVTKIGRMGFGRVKSYGIDDIVNAITNAV 182
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+ G +E++L+ ++ AYGRD G +L LL I+A++ DG M+R+GM P + +
Sbjct: 183 SKGAREIYLTGQEISAYGRDRGYDLADLLEKILAKV--DGRFMVRLGMMEPLELSRIIDR 240
Query: 295 IAEVLRHPC-VYSFLHVPVQSGSDAVLSVSQK 325
+ +V++ VY F HVPVQSGSD VL + ++
Sbjct: 241 LLDVVKSDWRVYRFFHVPVQSGSDRVLMLMRR 272
>gi|432328224|ref|YP_007246368.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum sp. MAR08-339]
gi|432134933|gb|AGB04202.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum sp. MAR08-339]
Length = 386
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 125/227 (55%), Gaps = 19/227 (8%)
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
E+AD +I TC V +++ M I + + K +VV GC+P R+L E +G+ +
Sbjct: 14 EDADKIVIGTCVVIEHTENRMLRRIKELRRYGKDIVVYGCLPSARRELLE-DGLIPITTW 72
Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213
+ +R HE +L +K P + +V V +PI GCLG CTYC TK
Sbjct: 73 EFER----------AHE--MLDLRKSP---MDQVFLWDAVATIPIANGCLGKCTYCITKI 117
Query: 214 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273
ARGH+ S VE ++ RV+ + G E+ LS++DT AYGRDIG NL L+N I + D
Sbjct: 118 ARGHIKSRPVEWIISRVKDALNMGAVEIRLSAQDTAAYGRDIGTNLAELVNLITS---LD 174
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
G +RIGM P LE + E+ E + VY FLH+PVQSG D +L
Sbjct: 175 GRFYVRIGMMEPRETLEIIDELIESYKSSKVYKFLHIPVQSGDDRIL 221
>gi|221222491|sp|O29021.2|AMTAB_ARCFU RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
Length = 424
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 148/265 (55%), Gaps = 13/265 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ ++T+GC+ NQ+DS+ M G LS G + E+A++ +IN+C V ++ + +
Sbjct: 3 VAIETYGCTTNQADSDIMRGFLS--GEFELSSVEDAEVVIINSCGVIDFTERKIIRRMLD 60
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH----EVRLLHR 176
K K +V+AGC+ + S++ + S + +D VV+ V L G E R + +
Sbjct: 61 LKREGKKVVLAGCLTRISKEALSVAD-SALSPDNLDMVVDAVYSALNGRKLFTERRFIDK 119
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ L ++R N + I+ I+ GCLG C++C TK ARG L S++++++V +
Sbjct: 120 AEFSHLKC-RLRENA-IAIVSISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRA 177
Query: 237 GVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G +E+ L+S+DTGAYG D G LP LL I +E+ +G +R+GM NP + L E+
Sbjct: 178 GYREIQLTSQDTGAYGMDKGRAMLPELLRKI-SEI--EGEFRVRVGMMNPQHAVRMLDEL 234
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVL 320
+Y FLH+PVQSG + +L
Sbjct: 235 INAYSSEKIYKFLHIPVQSGDNRIL 259
>gi|150403330|ref|YP_001330624.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C7]
gi|150034360|gb|ABR66473.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C7]
Length = 425
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 144/269 (53%), Gaps = 13/269 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D+E + ++ F + L DN +++DI +INTC V+ ++ M + I
Sbjct: 3 IYIEGYGCTLNTADTEIIKNSVNEFEEFELADNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 171
KS K +VVAGC+ + + +K L V I+ G+ D +++ E +
Sbjct: 63 YFKSLDKKVVVAGCMAKALPKKIKNLADVLIMPREAQYSGIILKDNLLKECSEKYNEYNQ 122
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L L + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 123 NLNFEDNLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLVSYDRDLIVKKAE 181
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ G K + ++++DT YG D NL L++ I +E+P + +RIGM + F
Sbjct: 182 ELVKTGTKCLLVTAQDTACYGLDNKDNLSNLIDDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L E+ E + V FLH+P+QSG D VL
Sbjct: 239 LDELIESFKSEKVVKFLHLPIQSGDDQVL 267
>gi|159904885|ref|YP_001548547.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C6]
gi|159886378|gb|ABX01315.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C6]
Length = 425
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 145/268 (54%), Gaps = 11/268 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D+E + ++ F + LTDN +++DI +INTC V+ ++ M + I
Sbjct: 3 IYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKG-HEVRLLHRK 177
KS K +VVAGC+ + + +K L V I+ + + + LKG E +
Sbjct: 63 YFKSLDKKVVVAGCMAKALPKKIKNLADVLIMPREAQYSGIILKNNLLKGCSEKNGKSNE 122
Query: 178 KLPALD-----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L D + KV + LPI GCLG+CTYC K ARG+L SY + + +
Sbjct: 123 NLNFEDQLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLVSYDRDLIFKKAEE 182
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F L
Sbjct: 183 LVKTGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPLL 239
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+ E + V FLH+P+QSG D VL
Sbjct: 240 DELIESFKSEKVVKFLHLPIQSGDDQVL 267
>gi|159041572|ref|YP_001540824.1| RNA modification protein [Caldivirga maquilingensis IC-167]
gi|157920407|gb|ABW01834.1| RNA modification enzyme, MiaB family [Caldivirga maquilingensis
IC-167]
Length = 422
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T Y++T+GC N++DS M L GY ++ +AD+ L+NTC V+ S+ I
Sbjct: 3 TYYIETYGCWLNKADSALMEEDLRRMGYVKVNDPAQADLILVNTCAVREDSEIRELKAIE 62
Query: 120 KCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K K L+VAGC+ + S ++ IV ++ + E+++ + E RL+ R
Sbjct: 63 KYSRLGKKLIVAGCLTKARPSEIMRLAPDALIVNPSSVENLAELLKGGVNLTE-RLMVR- 120
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVI 234
+PK + V ++PI VGCLG C+YC K+ RG +G S + + + +
Sbjct: 121 ------IPKYYESSHVYVVPIQVGCLGNCSYCVIKYTRGGMGWVKSADLSVVKESIAKAV 174
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
A G +E++L+ ++ AYG+D G +L LL A++ ++ +G ++R+GM P + +
Sbjct: 175 ARGAREIYLTGQEISAYGKDKGYDLVDLLEAVLRDV--EGRYLIRLGMLEPLELEGMIHR 232
Query: 295 IAEVLRHPC-VYSFLHVPVQSGSDAVLSVSQK 325
+ +V+++ +Y F H+PVQSGSD VL + ++
Sbjct: 233 LIDVIKNDWRIYRFFHIPVQSGSDKVLRLMKR 264
>gi|282163181|ref|YP_003355566.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
SANAE]
gi|282155495|dbj|BAI60583.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
SANAE]
Length = 406
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 141/265 (53%), Gaps = 20/265 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T GC+ N SDS+ + + A G + EEAD ++NTC V + +M L A
Sbjct: 3 IYIETHGCTANASDSQAIRNSVLASGGEVVGTPEEADTVVVNTCAVTEFTSKSM--LKAI 60
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K + K +VVAGC+ L L+G+ R +++ E R+L +P
Sbjct: 61 KKYSGKRVVVAGCMAAAQPYL--LKGI---------RNIQIAEAPGAEAVARML--GIMP 107
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
A P ++ V + I GC G C+YC + RG L S VE +V ++T + G +E
Sbjct: 108 AAGRPFIKGTSAV--VSIAEGCRGHCSYCIVRLVRGPLRSAPVEEVVHSIKTALRMGARE 165
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ L+++DTGAYG D G LP L+ I L +G +R+GM NP I + L ++A +
Sbjct: 166 ILLTAQDTGAYGLDAGERLPALMKEI---LSIEGDYRIRLGMMNPFSIADILGDMARIFN 222
Query: 301 HPCVYSFLHVPVQSGSDAVLSVSQK 325
P VY F H+PVQSGSD +L + ++
Sbjct: 223 DPRVYRFAHIPVQSGSDRILGLMER 247
>gi|52549017|gb|AAU82866.1| conserved hypothetical protein [uncultured archaeon GZfos21B5]
Length = 430
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 136/265 (51%), Gaps = 26/265 (9%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
GT ++++TFGC+ N D+ M L G+ + + SE ADI ++NTCTV ++ +
Sbjct: 9 GTAKVFIETFGCTANTGDTMEMRAILRNAGHEIVEESE-ADIVIVNTCTVTKRTELNVIK 67
Query: 117 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + K K +VVAGC+ +L + SI+G D V V ++ E +
Sbjct: 68 RLNELKERGKAVVVAGCMAAAQPELVK----SILG----DGVAMVTPRDIQASEKQ---- 115
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
LD V + ++ I GC+G CTYC K ARG L SY E + V++ +
Sbjct: 116 ----RLDFDGV-----IAVITIAQGCIGKCTYCIVKQARGKLKSYKSEKICEAVKSAVES 166
Query: 237 GVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G E+ ++S+D+ AYG + LP LL I + +G +R+GM NP ++ L E+
Sbjct: 167 GANEIRITSQDSSAYGWSSTDIKLPALLEQITS---VEGDFRIRVGMMNPFTLMPILDEL 223
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVL 320
E ++ F HVPVQSGSD VL
Sbjct: 224 LEAFNTEKIFKFFHVPVQSGSDRVL 248
>gi|289596431|ref|YP_003483127.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
gi|289534218|gb|ADD08565.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
Length = 404
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 139/260 (53%), Gaps = 23/260 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GCS N +++ M GQ A G + EEAD+ LI TC V +++ M I +
Sbjct: 3 VYLEAYGCSQNIAETN-MLGQ--AMG-EIVSRPEEADVILIGTCVVIEHTENRMLRRIEE 58
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K K +VV GC+P ++L +++ V I + E+ E L L R +
Sbjct: 59 LKRYGKKIVVYGCLPSARKELLDIDVVPIATWE-----FEMAGEILN------LDRSPMD 107
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
+ + V +PI GCLG CTYC T+ ARG + S + E ++ V+ + E
Sbjct: 108 EVFIWDA-----VATIPIANGCLGQCTYCITRLARGRVKSRSKEWILRLVKKALEQRAVE 162
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ +S++DT AYGRDIG L L+N+I A +P G LR+GM P L L E+ +
Sbjct: 163 IRISAQDTAAYGRDIGTELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELIDAYS 219
Query: 301 HPCVYSFLHVPVQSGSDAVL 320
+P VY FLH+PVQSG + +L
Sbjct: 220 NPKVYKFLHLPVQSGDNEIL 239
>gi|296109521|ref|YP_003616470.1| RNA modification enzyme, MiaB family [methanocaldococcus infernus
ME]
gi|295434335|gb|ADG13506.1| RNA modification enzyme, MiaB family [Methanocaldococcus infernus
ME]
Length = 411
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 150/270 (55%), Gaps = 21/270 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC N++D+E + L G+ +T++ +EA+I +INTC V+ +++ M I
Sbjct: 3 VYVEGYGCVLNKADTEIIKESLIKEGFEITESLDEANIVIINTCVVRLETENKMMHRINY 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETL-------KGHEVRL 173
S K ++VAGC+P+ ++ ++EG + ++ R E++++ L +G E L
Sbjct: 63 LNSLGKLVIVAGCLPKALKE--KVEGFYHIYPKEAHRAGEILKDILTKKKKEDRGEEKEL 120
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
KKL L + K V LPI+ GCLG C+YC K ARG L SY E LV + +
Sbjct: 121 Y--KKLNYL------KPKLVTPLPISEGCLGNCSYCIVKIARGKLISYPREFLVRKAEEL 172
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+ G K + ++++DT YG D G NL LL + +G ++R+GM + ++ L
Sbjct: 173 VKGGAKCLLITAQDTACYGLDRGDNLANLLKDLC---QIEGEFIMRVGMMHAKYLSPILD 229
Query: 294 EIAEVLR-HPCVYSFLHVPVQSGSDAVLSV 322
EI E+ R + FLH+P+QSG D +L +
Sbjct: 230 EIIELYREEEKIGKFLHLPLQSGDDEILKL 259
>gi|116753688|ref|YP_842806.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
gi|116665139|gb|ABK14166.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
Length = 411
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 148/259 (57%), Gaps = 18/259 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC+ N +S + G L A G+ +D + +++ ++NTC V S ++ M I + K
Sbjct: 5 IETYGCTSNTGNSMELRGALIAHGHQESD-LDGSEVVILNTCAVTSRTERNMLRRIGELK 63
Query: 123 SAKKPLVVAGCVPQGSRDLKE-LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+ L+VAGC+P +L E +E V ++ IDRV++ + + H L LP
Sbjct: 64 GRR--LIVAGCLPAAIPELIESVECVGVLNRWGIDRVLDALGRS--EHPTSELSASCLPG 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
++ I+ GCLGAC YC K ARG L S + V +I+ G E+
Sbjct: 120 ---------SLCGVVNISEGCLGACAYCIVKRARGTLRSREPHEIEKDVMRLISSGAVEI 170
Query: 242 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301
L+S+D GAYG DIG +LP LL+ +++++ DG+ M+R+GM NP +L+ L ++ + ++
Sbjct: 171 QLTSQDAGAYGCDIGASLPELLD-LLSDI--DGAFMIRVGMMNPNSVLKILDDLLDSYKN 227
Query: 302 PCVYSFLHVPVQSGSDAVL 320
+Y F+H+P+QSGSD VL
Sbjct: 228 EKIYRFIHLPLQSGSDRVL 246
>gi|410670393|ref|YP_006922764.1| MiaB-like tRNA modifying enzyme [Methanolobus psychrophilus R15]
gi|409169521|gb|AFV23396.1| MiaB-like tRNA modifying enzyme [Methanolobus psychrophilus R15]
Length = 440
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 149/273 (54%), Gaps = 17/273 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ TFGCS +Q+ +E M + G+AL S+ AD+ +INTCTVK ++ + +I +
Sbjct: 3 VHVATFGCSASQASAEIMRAIVRDKGHALVPLSD-ADVLVINTCTVKYATEQKILHIIRE 61
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ K ++V GC+P+ + +++ I+GV + RV E+++ K + R +
Sbjct: 62 AADSGKEVIVTGCMPEVQLEDIMEQNPQAHILGVNSVSRVGELLDSLGKTGKGGAKGRMQ 121
Query: 179 L------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ +P++R N + I ++ GC +C+YC ARG L S+ E ++ +R
Sbjct: 122 IFLHQPEGFQSVPRIRYNPNIHICQLSQGCNYSCSYCIVSVARGKLRSFGPEEIIADIRR 181
Query: 233 VIADGVKEVWLSSEDTGAYGRD-----IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+++G +E+WL+S+D G YG D + LP LL I +P G +R+GM NP
Sbjct: 182 AVSEGCREIWLTSQDNGQYGTDRRGTGKDILLPELLRMICT-IP--GQFRVRVGMMNPFS 238
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+L L ++ + + VY LH+P+QS SD VL
Sbjct: 239 VLPVLYDLLDAFDNEKVYKLLHLPIQSASDGVL 271
>gi|268325056|emb|CBH38644.1| conserved hypothetical protein, UPF0004 family, radical SAM
superfamily, TRAM family [uncultured archaeon]
Length = 430
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 135/265 (50%), Gaps = 26/265 (9%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
GT ++++TFGC+ N D+ M L G+ + + SE ADI ++NTCTV ++ +
Sbjct: 9 GTAKVFIETFGCTANTGDTMEMRAILRNAGHEIVEESE-ADIVIVNTCTVTKRTELNVIK 67
Query: 117 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + K K +VVAGC+ +L ++ G +V ++
Sbjct: 68 RLNELKERGKAVVVAGCMAAAQPELVR---------------------SILGDDVAMVTP 106
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ + A + ++ + + ++ I GC+G CTYC K ARG L SY E + V++ +
Sbjct: 107 RDIQAREKQRLEFDGVIAVITIAQGCIGKCTYCIVKQARGKLKSYKPEKICEAVKSAVES 166
Query: 237 GVKEVWLSSEDTGAYGR-DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G E+ ++S+D+ AYG + LP LL I + +G +R+GM NP ++ L E+
Sbjct: 167 GANEIRITSQDSSAYGWGSTDIKLPALLEQITS---VEGDFRIRVGMMNPFTLMPILDEL 223
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVL 320
E ++ F HVPVQSGSD VL
Sbjct: 224 LEAFNTEKIFKFFHVPVQSGSDRVL 248
>gi|333911554|ref|YP_004485287.1| MiaB-like tRNA modifying enzyme [Methanotorris igneus Kol 5]
gi|333752143|gb|AEF97222.1| MiaB-like tRNA modifying enzyme [Methanotorris igneus Kol 5]
Length = 413
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 148/274 (54%), Gaps = 24/274 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N +D+ + L +G+ +T N E+AD+ +INTC V+ +++ M I
Sbjct: 3 VYVEGYGCTLNTADTNIIENSLRDYGFEITSNIEDADLVIINTCVVRLETENRMFARINY 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV-------EVVEETLKGHEVRL 173
KS K +VVAGC+ + + K++E ++ + + + + +E++ ++ L
Sbjct: 63 FKSLNKKVVVAGCLAKALK--KKVENLADLLIMPREAHLSGKILYKHFIEKSSIEKDINL 120
Query: 174 LHRKKL--PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ K P+L P LPI+ GC+G C+YC K ARG L SY+ E LV + +
Sbjct: 121 EEKLKYLSPSLITP----------LPISEGCIGNCSYCIVKIARGRLVSYSREKLVEKAK 170
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+I G K + ++++DT YG D NLP L+N + + +G ++RIGM + +
Sbjct: 171 ELINSGTKCLLITAQDTACYGFDRNDNLPNLINDLCS---IEGEFIMRIGMMHAKNVENI 227
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L ++ E + V LH+P+QSG D VL ++
Sbjct: 228 LDDLIEAYKDEKVAKLLHLPLQSGDDDVLKAMKR 261
>gi|261403097|ref|YP_003247321.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
gi|261370090|gb|ACX72839.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
Length = 414
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 145/262 (55%), Gaps = 7/262 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC N +D+E + L G+ + D + AD+ +INTC V+ +++ M I +
Sbjct: 4 VYVEGYGCVLNSADTEIIKNALREEGFEIVDELDRADVAVINTCVVRLETENRMIYRINE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK-GHEVRLLHRKKL 179
K+ K +VVAGC+P+ ++ +++G + ++ + ++++ +K G V L K
Sbjct: 64 LKNLGKDVVVAGCLPKALKE--KVKGFLHIYPREAHKAGKILKIYIKSGKRVEGLEDDKS 121
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
L + + + LPI GCLG CTYC K ARG+L SY E +V + +I G K
Sbjct: 122 LHKKLDYIT-SSLITPLPICEGCLGHCTYCIVKIARGNLISYPREKIVKKAEELIKKGTK 180
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
++++++DT YG D NL LLN + +G ++R+GM + + E + E+ EV
Sbjct: 181 CIFITAQDTACYGFDRNDNLANLLNDLC---NIEGDFIMRVGMMHAKNVEEIIDELIEVY 237
Query: 300 RHPCVYSFLHVPVQSGSDAVLS 321
+ V FLH+P+QSG D +L
Sbjct: 238 KTDKVGKFLHLPLQSGDDEILK 259
>gi|336121828|ref|YP_004576603.1| MiaB-like tRNA modifying protein [Methanothermococcus okinawensis
IH1]
gi|334856349|gb|AEH06825.1| MiaB-like tRNA modifying enzyme [Methanothermococcus okinawensis
IH1]
Length = 428
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 139/269 (51%), Gaps = 13/269 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D+ + + F + + N E+AD+ +INTC V+ ++ M + I
Sbjct: 4 IYIEGYGCTLNAADTIIIKNSIVTFKDFQIVQNPEDADVVIINTCAVRLETEHKMISRIK 63
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE-TLKGH-------EV 171
KS K +VVAGC+P+ R+ E G ++ ++ ++V + T H
Sbjct: 64 HFKSLNKKVVVAGCMPKALREKVEDIGDVLIMPKEAHLSGKIVHDYTTYNHCNIGGNNNS 123
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ KL L P N + LPI+ GC+G CTYC K ARG L SY L+ +
Sbjct: 124 NVDIDDKLKYL-TPTNPENSLIMPLPISEGCIGKCTYCIVKVARGRLISYNRNLLIKKAE 182
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
I GVK + ++S+DT YG D LP L+N I + DG +RIGM + + +
Sbjct: 183 EFINKGVKHILITSQDTACYGFDKNDTLPNLINDIAS---IDGEFDMRIGMMHAKNVTQI 239
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ E+ ++ V FLH+P+QSG D VL
Sbjct: 240 MDELIASYQNDKVSKFLHLPIQSGDDKVL 268
>gi|70939009|ref|XP_740104.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56517584|emb|CAH81443.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 284
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 87/118 (73%), Gaps = 2/118 (1%)
Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPIL 262
G CTYC TK ARG+L SY ++ +V R++ V D +KE+WL+SED+GAYG D+ N+ L
Sbjct: 1 GNCTYCNTKFARGNLSSYNIKDIVSRIKHVYTQDNIKEIWLTSEDSGAYGIDLNTNIVNL 60
Query: 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L I+ + D M+RIGMTNPP+IL+H+K+I ++L+H +Y F+H+PVQSGS+ VL
Sbjct: 61 LKEIL-DYVQDTDIMIRIGMTNPPYILKHVKDICKLLKHKNMYEFIHIPVQSGSNNVL 117
>gi|449066971|ref|YP_007434053.1| hypothetical protein SacN8_04670 [Sulfolobus acidocaldarius N8]
gi|449035479|gb|AGE70905.1| hypothetical protein SacN8_04670 [Sulfolobus acidocaldarius N8]
Length = 402
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 135/252 (53%), Gaps = 12/252 (4%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-KPLVVAGCVPQ 136
M L G+ + DN ++A+I +INTC V+ ++ M I + K K LVVAGC+
Sbjct: 1 MMTLLRDKGHEIVDNIQDAEILVINTCAVRLETEERMKQRIKELKKYNDKRLVVAGCLAS 60
Query: 137 G--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVE 194
+ + S++G Q + ++V+VVE + K +V L K L PKV K +
Sbjct: 61 AEPAVVVSLAPEASVIGPQSVQKIVDVVENS-KQRQVYLNEDKPLIT---PKVFDGK-IA 115
Query: 195 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 254
ILPI GC G C +C TK AR L SY +V VR + G E+ LS +DT AYG D
Sbjct: 116 ILPIADGCAGDCNFCITKLARRKLRSYPPHLIVESVRDAVRKGAVEIELSGQDTAAYGLD 175
Query: 255 IGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
+G I L+ +V ++ +G M+RIGM P + + I EVLR VY F+H+PVQ
Sbjct: 176 LG---QIKLSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGIIEVLRETKVYKFIHLPVQ 232
Query: 314 SGSDAVLSVSQK 325
SG D VL + +
Sbjct: 233 SGDDNVLKLMNR 244
>gi|302348200|ref|YP_003815838.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
gi|302328612|gb|ADL18807.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
Length = 437
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 146/275 (53%), Gaps = 13/275 (4%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T Y++T+GC+ ++ DSE M L GY + EAD+ ++NTC V+ +++ +
Sbjct: 8 TTKYYIETYGCALSEFDSEIMRSILRGAGYEECKDPREADVIIVNTCAVRLDTEAKIVKR 67
Query: 118 IAKCKSAK---KPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+ + K LVV+GC+ + S L+ S+V Q + R+++ V TL
Sbjct: 68 LKELNGLSLQGKKLVVSGCLSKARPSLILRTAPAASLVSPQNVTRILDAV--TLDRPIYM 125
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L + + L P R + V + I+ GCL C++C+TK AR +L SY ++V VR
Sbjct: 126 LDGERDVNFLPKPPTRDS--VATVMISEGCLENCSFCETKLARRYLKSYPPRAIVSIVRD 183
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G +E+ L+ +D AYG D+ LP L+ I+ ++P G LRIGM P +E
Sbjct: 184 LVQGGAREIRLTGQDAAAYGVDLPGKPRLPDLIADILDKVP--GEYRLRIGMMTPNQAME 241
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ ++ +V R V+ F H+PVQSG D VL + +
Sbjct: 242 IIDDLLDVYRDGRVFKFFHIPVQSGDDRVLKIMNR 276
>gi|449069243|ref|YP_007436324.1| hypothetical protein SacRon12I_04660 [Sulfolobus acidocaldarius
Ron12/I]
gi|449037751|gb|AGE73176.1| hypothetical protein SacRon12I_04660 [Sulfolobus acidocaldarius
Ron12/I]
Length = 401
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 133/244 (54%), Gaps = 12/244 (4%)
Query: 86 GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-KPLVVAGCVPQG--SRDLK 142
G+ + DN ++A+I +INTC V+ ++ M I + K K LVVAGC+ + +
Sbjct: 8 GHEIVDNIQDAEILVINTCAVRLETEERMKQRIKELKKYNDKRLVVAGCLASAEPAVVVS 67
Query: 143 ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGC 202
S++G Q + ++V+VVE + K +V L K L PKV K + ILPI GC
Sbjct: 68 LAPEASVIGPQSVQKIVDVVENS-KQRQVYLNEDKPLIT---PKVFDGK-IAILPIADGC 122
Query: 203 LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL 262
G C +C TK AR L SY +V VR + G E+ LS +DT AYG D+G I
Sbjct: 123 AGDCNFCITKLARRKLRSYPPHLIVESVRDAVRKGAVEIELSGQDTAAYGLDLG---QIK 179
Query: 263 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
L+ +V ++ +G M+RIGM P + + I EVLR VY F+H+PVQSG D VL
Sbjct: 180 LSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGIIEVLRETKVYKFIHLPVQSGDDNVLK 239
Query: 322 VSQK 325
+ +
Sbjct: 240 LMNR 243
>gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum pernix K1]
gi|116062821|dbj|BAA80529.2| MiaB homolog [Aeropyrum pernix K1]
Length = 450
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 146/274 (53%), Gaps = 9/274 (3%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
+ T Y++ +GCS ++ D+ MA +L GY E+AD+ L+NTC V+ ++ +
Sbjct: 17 SRTYYLEVYGCSLSEFDALIMASRLEEAGYRRVARPEDADVILVNTCAVRLDTEQRIAER 76
Query: 118 IAKCKSA--KKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
+ K + + VVAGC+ + L + + S++ Q ++RV++ V+ G + +
Sbjct: 77 LEKLRLQLPDRKYVVAGCLVKARPGLVARLVPEASLLAPQAVERVLDAVDALESGRRLVV 136
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L ++ +P++ V + I GCLG C++C TK AR + SY+ +V RVR
Sbjct: 137 LDGRR-DTRSMPQLPITDAVVTVMIQEGCLGDCSFCITKVARRQVRSYSPRVIVERVREA 195
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+ G +E+ L+ D YG D+ NL L+ AI+ ++ +G +R+GM P + +
Sbjct: 196 VEKGAREIRLTGTDVAVYGVDLPGKPNLADLVAAILEKV--EGDYRIRVGMMTPDQVEPY 253
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L + +V R VY + H+PVQSG D VL + ++
Sbjct: 254 LDSLLDVYRDERVYKYFHLPVQSGDDEVLKIMKR 287
>gi|296242700|ref|YP_003650187.1| MiaB family RNA modification protein [Thermosphaera aggregans DSM
11486]
gi|296095284|gb|ADG91235.1| RNA modification enzyme, MiaB family [Thermosphaera aggregans DSM
11486]
Length = 427
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 145/276 (52%), Gaps = 21/276 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+SD M L G+ + DN AD+ +INTCTV+ ++ M I+
Sbjct: 3 VYVETYGCALNRSDEALMKHVLIERGHTIVDNPSNADVVIINTCTVRLDTEQHMLNRISS 62
Query: 121 CK----SAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + K L+VAGC+P Q + K S+V Q R+ VE G V L
Sbjct: 63 LRELTQARKGKLIVAGCLPAAQPYKVAKTAPEASLVSPQNSSRIYVAVES--DGRVVMLD 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
++ + L NK I PI GCL C++C TKHAR L S+TVE++V V T +
Sbjct: 121 GVRERDRIGL--CFENKVAPI-PIQEGCLSNCSFCITKHARRVLVSHTVEAIVKSVETAV 177
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP---PFIL 289
G E+ L+ D G YG ++ LP L+ V+ LP G +RIGM NP P IL
Sbjct: 178 RMGAVEIQLTGMDLGTYGMELYGKRYLPELVRR-VSTLP--GEFRVRIGMINPEHLPPIL 234
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ L E + R +Y FLH+P+QSGSD VL +
Sbjct: 235 DELLEAVKSDRR--IYRFLHIPLQSGSDKVLKAMNR 268
>gi|320101289|ref|YP_004176881.1| MiaB family RNA modification protein [Desulfurococcus mucosus DSM
2162]
gi|319753641|gb|ADV65399.1| RNA modification enzyme, MiaB family [Desulfurococcus mucosus DSM
2162]
Length = 428
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 148/278 (53%), Gaps = 24/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+SD M ++ G+ L ++ +AD +INTCTV+ ++ M I +
Sbjct: 3 VYIETYGCALNRSDEALMRESITGKGHVLVNDPGDADAIIINTCTVRLDTEYHMVKRIRE 62
Query: 121 ----CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
A K L+VAGC+ + + G S++ Q RVVEV+E R++
Sbjct: 63 LYKLSMEAGKKLIVAGCMARAQPYTVSRIAPGASLLSPQNSPRVVEVLEAP-----GRVV 117
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ A D V V +P+ GCL C++C ++HAR L S++++++V V +
Sbjct: 118 MINGVRARDRIGVYVENRVAPIPVQEGCLSNCSFCISRHARRVLVSHSIDAVVKAVGKAV 177
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
DG EV L+ D G YG D+ LP L+ IV + G+ MLR+GM NP EHL
Sbjct: 178 RDGAVEVQLTGMDLGTYGMDLYRARRLPDLIRRIVENV--RGNYMLRVGMINP----EHL 231
Query: 293 KEIAE-----VLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ I E V VY FLH+P+QSGS+ VL + ++
Sbjct: 232 RHILEDLVKVVADAENVYKFLHIPLQSGSNRVLKLMRR 269
>gi|297527331|ref|YP_003669355.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
DSM 12710]
gi|297256247|gb|ADI32456.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
DSM 12710]
Length = 429
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 143/280 (51%), Gaps = 29/280 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+ D M L + G+ L + EAD +INTCTV+ ++ M I +
Sbjct: 5 VYIETYGCALNRGDEYIMKTVLVSRGHRLVNEIAEADTIIINTCTVRYDTELKMIKRIKE 64
Query: 121 ----CKSAKKPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEET-----LKGH 169
K L+VAGC+ + + K S+V Q ++ VE LKG
Sbjct: 65 LYKIASEQNKKLIVAGCMAKAQPYKIHKIAPRASLVSPQNASKIWIAVESDKQVFLLKGE 124
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
R ++ +K + LPI GCLG C++C K+AR L SY + +
Sbjct: 125 RDR----------NILGTHVDKQIAYLPIQEGCLGNCSFCIVKNARRQLVSYPINKIKNT 174
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 286
V ++ GV E+ L+ +DT +YG D+ LP LL EL G+ M+RIGM NP
Sbjct: 175 VEELVGKGVVEIELTGQDTASYGLDLYGKQKLPHLLE----ELDRIKGNFMIRIGMMNPD 230
Query: 287 FILEHLKEIAEVLRHPC-VYSFLHVPVQSGSDAVLSVSQK 325
+ L E+ E++++ +Y FLH+P+QSGSD VL V ++
Sbjct: 231 TLANILDELVEIIKYSAHIYRFLHIPLQSGSDKVLRVMKR 270
>gi|119719528|ref|YP_920023.1| RNA modification protein [Thermofilum pendens Hrk 5]
gi|119524648|gb|ABL78020.1| RNA modification enzyme, MiaB family [Thermofilum pendens Hrk 5]
Length = 428
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 147/276 (53%), Gaps = 21/276 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++TFGC N+ +S MA L G+ + ++ E AD+ ++NTC V+ +++ + + +
Sbjct: 4 VYIETFGCWLNKGESNIMATLLKRRGHKVVESIENADVVILNTCAVRGDTETKIFRRLRE 63
Query: 121 CKSAKKP----LVVAGCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+ ++ LVV+GC+ P+ D+ S+V I+++ EVVE K VR
Sbjct: 64 LEELRQKRGFRLVVSGCLVNVRPKSILDVA--PSASLVEPDAIEKIPEVVESEDKLLIVR 121
Query: 173 LLH--RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGR 229
R LP V ++PI GCLG+C +C RG + SY ++ ++
Sbjct: 122 QYKASRNVLPDYS------GGAVHVVPIESGCLGSCAFCIEWVTRGTGVKSYPIDVIIEN 175
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
VR ++ G +E++L+ +D AYG D+G NL L+ I+ E+ DG +R+GM P +
Sbjct: 176 VRAAVSKGAREIFLTGQDVAAYGYDLGTNLYELVKRILEEV--DGEYRVRLGMMEPMLLG 233
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
LK + E+ R +Y + H+P QSG D VL + ++
Sbjct: 234 RFLKNLLELFRDERLYRYFHIPAQSGDDKVLRLMRR 269
>gi|154150044|ref|YP_001403662.1| MiaB-like tRNA modifying enzyme [Methanoregula boonei 6A8]
gi|153998596|gb|ABS55019.1| MiaB-like tRNA modifying enzyme [Methanoregula boonei 6A8]
Length = 430
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 137/260 (52%), Gaps = 27/260 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC +N D+ + L +G + E+AD ++NTCTV P++ M ++
Sbjct: 25 VYIETYGCRYNFGDTANLVAVLKHYGSTVVPAPEDADAVVVNTCTVVGPTERRMLRRLSA 84
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ +KPL V GC+P R+ + + V + +T++ L+
Sbjct: 85 LQ--EKPLFVTGCMPLVQRE----------AILAVCSPVIIHPDTIREASRALMTVG--- 129
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
++ V I+ I GCLG CTYC T+ ARG L S+ V+ + ++ + G E
Sbjct: 130 ---------SESVGIVQIAQGCLGRCTYCITRRARGPLRSFPVQEIRNKIEEYVRAGAYE 180
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ L+++DT A+GRD G LP LL A+ + +P G+ LR+GM NP L L ++ +
Sbjct: 181 IQLTAQDTSAWGRDTGQRLPDLLTAL-SSIP--GNFRLRVGMMNPATTLGILDDLIDAFA 237
Query: 301 HPCVYSFLHVPVQSGSDAVL 320
++ F+H+PVQSGSD +L
Sbjct: 238 SDRLFRFVHLPVQSGSDRIL 257
>gi|448415535|ref|ZP_21578265.1| miab-like tRNA modifying enzyme [Halosarcina pallida JCM 14848]
gi|445680488|gb|ELZ32932.1| miab-like tRNA modifying enzyme [Halosarcina pallida JCM 14848]
Length = 423
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 137/264 (51%), Gaps = 20/264 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ + EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVEGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+S L++ GC+ QG +E I+ + V E G
Sbjct: 65 ESETADLIITGCMALAQGEEFREEEVDAQILHWDDVPSAVTNGECPTPGPGTE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL I +E+ DG +R+GM NP I +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLPELLERICSEI--DGDFRVRLGMANPGGIHGIHEELADV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLS 321
RH +Y+F+H+PVQSGSDAVL
Sbjct: 229 FDRHEKLYNFIHLPVQSGSDAVLE 252
>gi|389860714|ref|YP_006362954.1| MiaB family RNA modification protein [Thermogladius cellulolyticus
1633]
gi|388525618|gb|AFK50816.1| RNA modification enzyme, MiaB family [Thermogladius cellulolyticus
1633]
Length = 425
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 142/270 (52%), Gaps = 16/270 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+SD M L+ G+ + D+ AD +INTCTV+ ++ M IA+
Sbjct: 3 VYLETYGCALNKSDEALMKRVLTDRGHGIVDDPTSADALVINTCTVRLDTEYRMARRIAE 62
Query: 121 ----CKSAKKPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
K + K LVVAGC+ + + K SIV Q D++ VE R++
Sbjct: 63 LYRLAKESGKKLVVAGCLAKAQPYKVAKLAPDASIVSPQNADKIYLAVESN-----SRVV 117
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
L + V + +P GCLG CT+C KHAR L S+ +E + V +
Sbjct: 118 LLTGLRSRGSIGVFLTGRIAPIPAQEGCLGNCTFCIVKHARRVLVSHPIEDVKKAVEEAV 177
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
G E+ L+ D G YG D+ LP L+ + VAE+ +G M+R+GM NP + L
Sbjct: 178 RLGAVEIELTGMDLGTYGIDLYKTRKLPELIES-VAEV--EGDFMVRVGMLNPEHLSYIL 234
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
++ E L+H VY FLH+P+QSGS+ +L +
Sbjct: 235 DDLVEALQHRKVYKFLHIPLQSGSNRILKL 264
>gi|253742055|gb|EES98909.1| tRNA 2-methylthioadenosine synthase [Giardia intestinalis ATCC
50581]
Length = 525
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 55/319 (17%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT---------DNSEEADIWLINTCTVKSPSQ 111
+ M T GC HN ++S+ +A L G +T + +++ D+ I +CTVK+PS+
Sbjct: 26 VMMVTMGCGHNAAESDIIASALQTAGALITHSNGKYITPEGAKDVDVLYITSCTVKNPSE 85
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQG----------SRDLKELEGVSIVGVQQIDRVVEV 161
+ K A +V+ GCVPQ + K+L ++ Q + + +
Sbjct: 86 DKAFVHVQKGLEAGVVVVLGGCVPQSYGAVNDELRRASASKQLIISGVLTQQWLADLPRL 145
Query: 162 VEETLKGHEVRLLHRKKLPALDL--------------------------------PKVRR 189
+ E + H + H + PAL + P R
Sbjct: 146 LREAIDLHTLSDSHLLQ-PALRMTQPSDKIGVPAAISYVTKEATKDINVEYLKCTPIHRA 204
Query: 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV-KEVWLSSEDT 248
N ++I+ GC+G+CTYCKT H+RG L S +++L+ R+R+ +AD V +E+WL+ EDT
Sbjct: 205 NPIIDIIATGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSSLADPVIRELWLTGEDT 264
Query: 249 GAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306
A+GRD G LL I L + T ML+IGMT+P ++ + ++ VY
Sbjct: 265 LAWGRDSGTTFAALLQEIQKLLETENPTHKMLKIGMTDPDSVINQEDSLISFMQCKYVYK 324
Query: 307 FLHVPVQSGSDAVLSVSQK 325
FLH+PVQSGSD +L++ ++
Sbjct: 325 FLHLPVQSGSDRILTLMRR 343
>gi|16081399|ref|NP_393736.1| hypothetical protein Ta0256 [Thermoplasma acidophilum DSM 1728]
gi|10639399|emb|CAC11401.1| hypothetical protein [Thermoplasma acidophilum]
Length = 401
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 133/267 (49%), Gaps = 28/267 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY + +GC+ NQ ++ +L + G L +EADI +I TC V ++ M I +
Sbjct: 3 IYYEGYGCTLNQGETGLYVNKLLSEGSVLVSRPDEADISIIGTCAVIQKTEDHMLKRIEE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVG--VQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ V+ GC L ++G I G ++ IDR +E +
Sbjct: 63 LSRLGRVKVI-GC-------LSAIKGSEISGGNIEAIDR-----------NEFQQFQE-- 101
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L+ + + + +PIN GC G C +C + ARG L S E +V ++R ++A G
Sbjct: 102 --YLEDTSIIDAEIMSGIPINQGCTGKCNFCISHIARGKLVSRRPEKIVNQIRMMVAAGK 159
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
+E+ +SS DT AYG+D G LP L+ I A DG MLR+GM P +E L ++ E
Sbjct: 160 REIRISSLDTAAYGKDTGYRLPSLIKDITA---VDGDFMLRVGMMEPRNTIEILDDLLEA 216
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSVSQK 325
P V+ FLH+PVQSG D VL+ +
Sbjct: 217 YDDPKVFKFLHIPVQSGDDRVLTAMNR 243
>gi|354610327|ref|ZP_09028283.1| MiaB-like tRNA modifying enzyme [Halobacterium sp. DL1]
gi|353195147|gb|EHB60649.1| MiaB-like tRNA modifying enzyme [Halobacterium sp. DL1]
Length = 417
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 134/267 (50%), Gaps = 26/267 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D + AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHQVDGPDAADVAILNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE-----TLKGHEVRLLHR 176
+S L+V GC+ + E V V D V E V T G E
Sbjct: 65 ESETADLIVTGCMALAQGEEFRAENVD-AQVLHWDEVPEAVTNGECPTTTPGAE------ 117
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
P LD + ILPI GC+ C+YC TK A G + S VE V + R ++
Sbjct: 118 ---PVLD-------GVIGILPIARGCMSNCSYCITKQATGRVDSPPVEENVEKARALVHA 167
Query: 237 GVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+
Sbjct: 168 GAKEIRITGQDTGVYGWDNGDRKLPELLDRIATEI--DGDFRVRVGMANPGGVHGIREEL 225
Query: 296 AEVL-RHPCVYSFLHVPVQSGSDAVLS 321
AEV H +Y+FLH PVQSGSD VL
Sbjct: 226 AEVFAEHDEIYNFLHAPVQSGSDDVLE 252
>gi|448606159|ref|ZP_21658738.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
sulfurifontis ATCC BAA-897]
gi|445739576|gb|ELZ91083.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
sulfurifontis ATCC BAA-897]
Length = 429
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 141/266 (53%), Gaps = 24/266 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
++ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 EAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLS 321
+V RH +Y+F+H PVQSGSD VL
Sbjct: 227 DVFARHDKLYNFIHAPVQSGSDEVLE 252
>gi|448623042|ref|ZP_21669691.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
denitrificans ATCC 35960]
gi|445753550|gb|EMA04967.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
denitrificans ATCC 35960]
Length = 429
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 141/266 (53%), Gaps = 24/266 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
++ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 EAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLS 321
+V RH +Y+F+H PVQSGSD VL
Sbjct: 227 DVFARHDKLYNFIHAPVQSGSDEVLE 252
>gi|47220778|emb|CAF99985.1| unnamed protein product [Tetraodon nigroviridis]
Length = 253
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 105/216 (48%), Gaps = 72/216 (33%)
Query: 91 DNSEEADIWLINTCTVKSPSQSAMDTLIA------------------------------- 119
D+ EAD+WL+N+CTVK+P++ I
Sbjct: 16 DDPIEADLWLLNSCTVKNPAEDHFRNSIKALFVLGPEVMTDLPKRGQGCADWLAHCQLSQ 75
Query: 120 ------------------KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEV 161
K + +K +V+AGCVPQ + L+G+SI+GVQQIDRVVEV
Sbjct: 76 KTVGEQLRGYRRRLSKDRKAQEQQKKVVLAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEV 135
Query: 162 VEETLK----------------GHEVRLLHRKKL-------PALDLPKVRRNKFVEILPI 198
V+E +K GH VRLL +KK LDLPK+R+N +EI+ I
Sbjct: 136 VDEAIKDQRARTRHTTYETCDAGHSVRLLGQKKDGGRRLGGARLDLPKIRKNPLIEIISI 195
Query: 199 NVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
N GCL ACTYCKTKHARG L SY VE LV R R
Sbjct: 196 NTGCLNACTYCKTKHARGDLASYPVEELVERTRQFF 231
>gi|37523584|ref|NP_926961.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gloeobacter
violaceus PCC 7421]
gi|81708482|sp|Q7NE65.1|MIAB_GLOVI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|35214589|dbj|BAC91956.1| glr4015 [Gloeobacter violaceus PCC 7421]
Length = 441
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 143/275 (52%), Gaps = 17/275 (6%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P +T + TFGC N++DSE MAG L+ GY + D S+ AD+ L NTCT++ ++ +
Sbjct: 7 PQGKTACLVTFGCQMNKADSERMAGALTHLGYRIVDESDTADLVLFNTCTIRDNAEQKVY 66
Query: 116 TLIAKCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
+ + + K+ LV+AGCV Q G + L+ + + +V G Q ++R+ +++E +
Sbjct: 67 SYLGQQARRKQRDPHITLVLAGCVAQQEGEKLLRRVPELDLVMGPQHVNRLSDLLERVAE 126
Query: 168 GHEVRLLHRKKLPAL-DLPKVRRNKFVEILP-INVGCLGACTYCKTKHARGHLGSYTVES 225
G +V + + + L D+ K RR+ V I GC CTYC RG S T E+
Sbjct: 127 GEQV--VATEPIEILEDITKPRRDSAVTAWANIIYGCNEGCTYCIVPSVRGREQSRTPEA 184
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ + + A G KEV L ++ AYGRDIG NL LL + P G LR ++P
Sbjct: 185 IKAEICELGASGYKEVTLLGQNIDAYGRDIGTNLASLLR-FIHNAP--GIERLRFATSHP 241
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ + L IA P V H+P QSG + VL
Sbjct: 242 RYFSDEL--IATCAELPKVCEHFHIPFQSGDNEVL 274
>gi|48477501|ref|YP_023207.1| oxidoreductase [Picrophilus torridus DSM 9790]
gi|48430149|gb|AAT43014.1| hypothetical oxidoreductase [Picrophilus torridus DSM 9790]
Length = 426
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 135/261 (51%), Gaps = 22/261 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +++GC+ +S++ ++ G L D+ E AD+ +I TC V ++ M I +
Sbjct: 29 VYFESYGCTLEKSEAALYVNKMLQDGGELVDDPERADVSVIGTCVVIKHTEDHMLKRIGE 88
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ ++V GC+ + + E E + ++ K E R +
Sbjct: 89 LSKKSRNVLVLGCLATVNGNTLESENIRVI----------------KPREFRSFY---TG 129
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
LD K++ ++ +PIN GC G C +C + +RG L S + E +VG+VR I G++E
Sbjct: 130 TLDDVKIKEPSILDGIPINQGCTGHCNFCISHISRGKLLSRSPEKIVGQVRMQIESGIRE 189
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ ++S DT AYG+DI +L L+N+I D MLR+GM P + L+++ + +
Sbjct: 190 IRITSLDTAAYGKDINTDLADLINSITG---LDVDFMLRVGMMEPRNTYDILEKLIDAYK 246
Query: 301 HPCVYSFLHVPVQSGSDAVLS 321
+ V+ FLH+PVQSG + +L
Sbjct: 247 NDKVFKFLHLPVQSGDNRILD 267
>gi|126465996|ref|YP_001041105.1| RNA modification protein [Staphylothermus marinus F1]
gi|126014819|gb|ABN70197.1| RNA modification enzyme, MiaB family [Staphylothermus marinus F1]
Length = 429
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 143/279 (51%), Gaps = 27/279 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC+ N+ D M L + G+ L + EAD +INTCTV+ ++ M I +
Sbjct: 5 IYIETYGCALNRGDEYIMKTVLVSRGHKLVEEITEADTIIINTCTVRYDTELKMIKRIKE 64
Query: 121 ----CKSAKKPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEET-----LKGH 169
K L++AGC+ + + K S+V Q ++ VE LKG
Sbjct: 65 LYRIASEQNKKLIIAGCMAKAQPYKIHKIAPKTSLVSPQNAPKIWIAVESDGQVFLLKGE 124
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
R + + +K + LPI GCLG C++C K+AR L SY + +
Sbjct: 125 RNRRILGTYV----------DKQIAYLPIQEGCLGNCSFCIVKNARRQLVSYPINKIKNT 174
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V+ ++ GV E+ ++ +DT +YG D+ LP LL + G+ M+RIGM NP
Sbjct: 175 VKELVGKGVVEIEITGQDTASYGLDLYGKQMLPNLLEELDG---IKGNFMIRIGMMNPDT 231
Query: 288 ILEHLKEIAEVLRHPC-VYSFLHVPVQSGSDAVLSVSQK 325
+ L E+ EV+++ +Y FLH+P+QSGSD VL + ++
Sbjct: 232 LANILDELIEVIKNSAHIYRFLHIPLQSGSDKVLRIMRR 270
>gi|448600667|ref|ZP_21656046.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
alexandrinus JCM 10717]
gi|445734680|gb|ELZ86236.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
alexandrinus JCM 10717]
Length = 429
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 138/266 (51%), Gaps = 24/266 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIRDELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLS 321
V RH +Y+F+H PVQSGSD VL
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLE 252
>gi|448578250|ref|ZP_21643685.1| MiaB-like tRNA modifying enzyme [Haloferax larsenii JCM 13917]
gi|445726791|gb|ELZ78407.1| MiaB-like tRNA modifying enzyme [Haloferax larsenii JCM 13917]
Length = 426
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 136/264 (51%), Gaps = 20/264 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L+V GC+ D EGV I+ + V E G V
Sbjct: 65 EQETADLIVTGCMALAQGDDFRDEGVDAQILHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G K
Sbjct: 118 PVLD-------GIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +E+A+V
Sbjct: 171 ELRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLS 321
+H +Y+F+H PVQSGSD VL
Sbjct: 229 FAKHDKLYNFIHAPVQSGSDEVLE 252
>gi|448592731|ref|ZP_21651778.1| MiaB-like tRNA modifying enzyme [Haloferax elongans ATCC BAA-1513]
gi|445730757|gb|ELZ82344.1| MiaB-like tRNA modifying enzyme [Haloferax elongans ATCC BAA-1513]
Length = 431
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 136/264 (51%), Gaps = 20/264 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 10 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 69
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L+V GC+ D EGV I+ + V E G V
Sbjct: 70 EQETADLIVTGCMALAQGDDFRDEGVDAQILHWDDVPTAVTNGECPTPGPGVE------- 122
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G K
Sbjct: 123 PVLD-------GIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAK 175
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +E+A+V
Sbjct: 176 ELRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADV 233
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLS 321
+H +Y+F+H PVQSGSD VL
Sbjct: 234 FAKHDKLYNFIHAPVQSGSDEVLE 257
>gi|292656724|ref|YP_003536621.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
gi|448290728|ref|ZP_21481874.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
gi|291371073|gb|ADE03300.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
gi|445578099|gb|ELY32514.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
Length = 429
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 138/274 (50%), Gaps = 40/274 (14%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L++ GC+ QG+ D +E +G + ++LH +
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-----------------------EGIDAQILHWDDV 100
Query: 180 PALDL--------PKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
PA P V + V ILPI GC+ C+YC TK A G + S +V+ V +
Sbjct: 101 PAAVTNGECPTPGPGVEPVLDGVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEK 160
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R ++ G KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP +
Sbjct: 161 ARALVHAGAKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGV 218
Query: 289 LEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLS 321
E+A V RH +Y+F+H PVQSGSD VL
Sbjct: 219 HGIRDELAAVFARHDKLYNFIHAPVQSGSDEVLE 252
>gi|254167353|ref|ZP_04874205.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
gi|197623616|gb|EDY36179.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
Length = 386
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 128/243 (52%), Gaps = 22/243 (9%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
M GQ A G + EEAD+ LI TC V +++ M I + K K +VV GC+P
Sbjct: 1 MLGQ--AMG-EIVSRPEEADVILIGTCVVIEHTENRMLRRIKELKQYGKKIVVYGCLPSA 57
Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILP 197
++L +++ V I + E+ E L L R + + + V +P
Sbjct: 58 RKELLDMDVVPIATWE-----FEMAGEILN------LDRSPMDEVFIWDA-----VATIP 101
Query: 198 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 257
I GCLG CTYC T+ ARG + S + + ++ V+ + G E+ +S++DT AYGRDIG
Sbjct: 102 IANGCLGQCTYCITRLARGRVKSRSKDWILRLVKKALEQGAVEIRISAQDTAAYGRDIGT 161
Query: 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
L L+N+I A +P G LR+GM P L L E+ + +P VY FLH+PVQSG D
Sbjct: 162 ELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELIDAYSNPKVYKFLHLPVQSGDD 218
Query: 318 AVL 320
+L
Sbjct: 219 EIL 221
>gi|433423456|ref|ZP_20406225.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp.
BAB2207]
gi|432198354|gb|ELK54647.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp.
BAB2207]
Length = 429
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 139/266 (52%), Gaps = 24/266 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLS 321
V RH +Y+F+H PVQSGSD VL
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLE 252
>gi|448546026|ref|ZP_21626353.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-646]
gi|448548100|ref|ZP_21627444.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-645]
gi|448557123|ref|ZP_21632558.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-644]
gi|445703372|gb|ELZ55303.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-646]
gi|445714802|gb|ELZ66560.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-645]
gi|445714992|gb|ELZ66749.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-644]
Length = 429
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 139/266 (52%), Gaps = 24/266 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLS 321
V RH +Y+F+H PVQSGSD VL
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLE 252
>gi|222480620|ref|YP_002566857.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
49239]
gi|222453522|gb|ACM57787.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
49239]
Length = 434
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 132/264 (50%), Gaps = 17/264 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ + LVV GC+ D GV +I EV L G E +
Sbjct: 63 ELEDVTAELVVTGCMALAQGDAFREAGVD----AEILHWDEVPSHVLNG-ECPTVTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S TVE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPTVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+AEV
Sbjct: 171 EIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGDFRVRLGMANPGGIHGIHEELAEV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLS 321
+ +Y F+H PVQSGSD VL
Sbjct: 228 FADNEELYDFIHAPVQSGSDDVLE 251
>gi|448569031|ref|ZP_21638443.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
lucentense DSM 14919]
gi|445725181|gb|ELZ76806.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
lucentense DSM 14919]
Length = 429
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 138/266 (51%), Gaps = 24/266 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIRDELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLS 321
V RH +Y+F+H PVQSGSD VL
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLE 252
>gi|13542169|ref|NP_111857.1| 2-methylthioadenine synthetase [Thermoplasma volcanium GSS1]
gi|14325601|dbj|BAB60504.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 401
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 129/265 (48%), Gaps = 24/265 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY + +GC+ NQ ++ +L G L N +EAD+ +I TC V ++ M I
Sbjct: 3 IYFEAYGCTLNQGETALYVNKLLNEGNTLVSNPKEADLSIIGTCAVIKKTEDHMMARIQN 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K V+ P + + E + VS++ + EV++E P
Sbjct: 63 LSRFGKVEVIGCLAPVKGKTMVE-DNVSVIEKDRFRSFQEVIDEVS-------------P 108
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
+ V +PIN GC G C +C + ARG L S E + G+++ ++ G+KE
Sbjct: 109 V-------NAEIVSGIPINQGCTGKCNFCVSHIARGKLVSRKPEKIAGQIKILLQRGIKE 161
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ ++S DT AYG+DIG+ LP L+ I E+ D LR+GM P LE + ++ R
Sbjct: 162 IKITSLDTAAYGKDIGLRLPHLIRTI-TEIGDDFR--LRVGMMEPKNTLEIVDDLISAYR 218
Query: 301 HPCVYSFLHVPVQSGSDAVLSVSQK 325
V+ FLH+PVQSG D VL V +
Sbjct: 219 SEKVFKFLHLPVQSGDDYVLEVMNR 243
>gi|325967748|ref|YP_004243940.1| MiaB family RNA modification protein [Vulcanisaeta moutnovskia
768-28]
gi|323706951|gb|ADY00438.1| RNA modification enzyme, MiaB family [Vulcanisaeta moutnovskia
768-28]
Length = 452
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 146/271 (53%), Gaps = 17/271 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DS+ + +L + G+ T++ + AD +INTC V+ ++ L+ K
Sbjct: 9 TFGCWLNKADSDIVITRLRSLGWEYTEDIKSADTIIINTCAVREEAERNELKLLRKLSEE 68
Query: 125 --KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR----KK 178
K L+V GC+ + + ++ + V E ++E + G ++ K
Sbjct: 69 YLNKRLIVTGCLTRVRPAM--IKDAAPNAVLVTSHGAEFIDEVVNGRNDIYVYEDRPMKY 126
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIA 235
LP+ P+ +++V +PI VGCLG C++C TK R G + SY + + V ++
Sbjct: 127 LPSY-YPEFHGHRYV--VPIQVGCLGNCSFCVTKVGRMGFGKVRSYEMSDITNAVANAVS 183
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G +E++L+ ++ AYGRD G +L LL I+ ++ DG M+R+GM P + + +
Sbjct: 184 RGAREIYLTGQEISAYGRDRGYDLADLLENILGKV--DGRFMIRLGMMEPLELSRVIDRL 241
Query: 296 AEVLRHPC-VYSFLHVPVQSGSDAVLSVSQK 325
++++ VY F H+PVQSGSD +L++ ++
Sbjct: 242 LDIVKSDWRVYRFFHIPVQSGSDRILTLMKR 272
>gi|448565475|ref|ZP_21636342.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
prahovense DSM 18310]
gi|445715219|gb|ELZ66975.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
prahovense DSM 18310]
Length = 429
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 139/266 (52%), Gaps = 24/266 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+S L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 ESETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLS 321
V H +Y+F+H PVQSGSD VL
Sbjct: 227 GVFAEHDKLYNFIHAPVQSGSDEVLE 252
>gi|448583429|ref|ZP_21646785.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax gibbonsii
ATCC 33959]
gi|445729658|gb|ELZ81253.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax gibbonsii
ATCC 33959]
Length = 429
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 139/266 (52%), Gaps = 24/266 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
++ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 EAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLS 321
V H +Y+F+H PVQSGSD VL
Sbjct: 227 AVFAEHDKLYNFIHAPVQSGSDEVLE 252
>gi|448611787|ref|ZP_21662217.1| MiaB-like tRNA modifying enzyme [Haloferax mucosum ATCC BAA-1512]
gi|445742548|gb|ELZ94042.1| MiaB-like tRNA modifying enzyme [Haloferax mucosum ATCC BAA-1512]
Length = 430
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 135/264 (51%), Gaps = 20/264 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L+V GC+ QG E I+ + V E G V
Sbjct: 65 EQETADLIVTGCMALAQGDDFRNEDIDAQILHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G K
Sbjct: 118 PVLD-------GIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +++A+V
Sbjct: 171 ELRITGQDTGVYGWDNGDRKLPELLDRICSEI--EGEFRVRVGMANPGGVHGIRQDLADV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLS 321
+H +Y+F+H PVQSGSD VL
Sbjct: 229 FAKHDTLYNFIHAPVQSGSDEVLE 252
>gi|313125740|ref|YP_004036010.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
gi|448285580|ref|ZP_21476821.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
gi|312292105|gb|ADQ66565.1| MiaB-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
gi|445576216|gb|ELY30673.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
Length = 417
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 136/268 (50%), Gaps = 20/268 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ + EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVEEPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L++ GC+ QG +E I+ + V E G
Sbjct: 65 EEETADLIITGCMALAQGEEFHEEDVDAQILHWDDVPSAVTNGECPTPGPGTE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPPVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP I +E+ EV
Sbjct: 171 EIRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRLGMANPGGIHGIHEELVEV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSVSQK 325
RH +Y+F+H+PVQSGSD VL ++
Sbjct: 229 FDRHDKLYNFIHLPVQSGSDTVLEAMRR 256
>gi|389848049|ref|YP_006350288.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
gi|448618147|ref|ZP_21666492.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
gi|388245355|gb|AFK20301.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
gi|445747702|gb|ELZ99157.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
Length = 430
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 135/264 (51%), Gaps = 20/264 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++N+CTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNSCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L+V GC+ QG +E I+ + V E G V
Sbjct: 65 EQETADLIVTGCMALAQGDDFREEDIDAQILHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +E+A+V
Sbjct: 171 ELRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLS 321
H +Y+F+H PVQSGSD VL
Sbjct: 229 FAEHDKLYNFIHAPVQSGSDEVLE 252
>gi|225850314|ref|YP_002730548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Persephonella
marina EX-H1]
gi|225646637|gb|ACO04823.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Persephonella marina
EX-H1]
Length = 438
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 150/278 (53%), Gaps = 20/278 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PSQSAMDTL--I 118
Y++TFGC N +DS+ MAG L GY + E+ADI L+NTC+V+ P Q + L
Sbjct: 5 YIRTFGCQMNINDSQKMAGMLKTLGYEPARDWEDADIILVNTCSVREKPDQKVLSALGEF 64
Query: 119 AKCKSAKKPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VR 172
K K+ K V V GC+ Q G L++ V +V G I + +++EE L+G++ V
Sbjct: 65 KKIKNKKPDAVIGVCGCLAQRAGYEILQKAPFVDMVFGTTNIHHLPKLLEEALQGNKAVE 124
Query: 173 LLHRKKLPALDL---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+L +L P VR N++ + + GC CTYC + RG S + ++
Sbjct: 125 ILEDIDQNETELDKYPTVRENRYTAYVTVMRGCDKKCTYCIVPYTRGKERSRRIGEILQE 184
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
V+ +I DGVKE+ L ++ AYG+D+G V LL A VA++ +G +R +P +
Sbjct: 185 VQWLIDDGVKEIHLIGQNVTAYGKDLGDVRFVDLLYA-VADV--EGVERIRFTTGHPRDL 241
Query: 289 LEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
E +K +AE+ P + LH+P+Q+GSD +L ++
Sbjct: 242 DEETIKAMAEI---PQICEHLHLPIQAGSDRILKAMER 276
>gi|167630503|ref|YP_001681002.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
gi|167593243|gb|ABZ84991.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
Length = 446
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 137/277 (49%), Gaps = 22/277 (7%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
PG T T GC NQ +++ +AG A GYA+ AD++++NTCTV S
Sbjct: 3 PGEPTAAFHTLGCKVNQGETDAIAGMFKARGYAIVPFDAPADVYVVNTCTVTHLSDRKSR 62
Query: 116 TLIAKC--KSAKKPLVVAGCVPQGSRD-LKELEGVSI-VGVQQIDRVVEVVEETLKGHEV 171
I K ++ +VV GC Q + D ++ +EGV I VG + +V++VEE + E
Sbjct: 63 QAIRKANRQNPDAVVVVTGCYAQTAADEVQAIEGVDIVVGTDRRSAIVDLVEEHRRSGET 122
Query: 172 --------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
R+ ++LPA R++ + I GC CTYC +ARG + S +
Sbjct: 123 VNTVYDSCRIERFEELPAAP----ERSRARATIKIQDGCDLYCTYCIIPYARGPVRSRRI 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
ES+V + +G KE+ LS GAYG D +L L+ + +P G +R+G
Sbjct: 179 ESVVEEATRLTGEGFKEIVLSGIHLGAYGSDFNADLAKLIVEL-CRIP--GLRRIRVGSV 235
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P E E+ E + HP V H+P+QSGSDAVL
Sbjct: 236 EPQ---EFTPELLEAVVHPRVCPHFHIPLQSGSDAVL 269
>gi|448407296|ref|ZP_21573684.1| MiaB-like tRNA modifying enzyme [Halosimplex carlsbadense 2-9-1]
gi|445675632|gb|ELZ28161.1| MiaB-like tRNA modifying enzyme [Halosimplex carlsbadense 2-9-1]
Length = 418
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 139/266 (52%), Gaps = 25/266 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M A+
Sbjct: 5 HIETYGCTANRGESRQIERSLRDGGHHPADGPEEADVAILNTCTVVEKTERNM-LRRAEE 63
Query: 122 KSAKKP--LVVAGCVP--QGSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
A+ P LVV GC+ QG +E + V D V E V + E
Sbjct: 64 LDAETPADLVVTGCMALAQG----EEFAAADLDAEVLHWDEVPEYV----RNGECPTTTP 115
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
P LD V ILPI GC+ C+YC TKHA G + S +VE + + R ++
Sbjct: 116 DTEPVLD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSVEENLEKARALVHA 168
Query: 237 GVKEVWLSSEDTGAYGRDIGVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G +E+ ++ +DTG YG D G L +LL+ I E+ +G +R+GM NP + +E+
Sbjct: 169 GAREIRITGQDTGVYGWDEGERKLHVLLDRICTEI--EGEFRVRVGMANPKGVHGIREEL 226
Query: 296 AEVL-RHPCVYSFLHVPVQSGSDAVL 320
AEV H +Y+FLH PVQSGSD VL
Sbjct: 227 AEVFAAHDELYNFLHAPVQSGSDDVL 252
>gi|124485405|ref|YP_001030021.1| hypothetical protein Mlab_0580 [Methanocorpusculum labreanum Z]
gi|124362946|gb|ABN06754.1| MiaB-like tRNA modifying enzyme [Methanocorpusculum labreanum Z]
Length = 416
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 140/277 (50%), Gaps = 52/277 (18%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
++Y +T+GC++N D+E + G ++EEAD LINTC V ++ M +
Sbjct: 16 SLYTETYGCTYNAGDTEKLMEIARNQGCVPASSAEEADAILINTCVVIDKTEQHMYERLD 75
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
A K L V GC+P + D+ R +
Sbjct: 76 L--YAGKLLFVTGCLPPVAADVL---------------------------------RTRY 100
Query: 180 PALDL--PKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
P + + P + + ++E+ L I GC G CTYC T+ ARG L S++ E +V
Sbjct: 101 PKIHIIDPALIHSCYMEVGTAHVGTNAVLQIARGCNGHCTYCITRLARGKLVSFSAEDIV 160
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ ++++ G E+ L+++DT ++G R+ G+ LP LL + A +P G+ M+RIGM NP
Sbjct: 161 RQAKSIVEAGATEIQLTAQDTSSWGLDRNDGLRLPDLLRQLCA-IP--GNFMIRIGMANP 217
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+L L + + L+ P ++ FLH+PVQSGSD+VL +
Sbjct: 218 DTLLPILDDFLDALKDPKIFLFLHIPVQSGSDSVLRL 254
>gi|448344382|ref|ZP_21533293.1| MiaB-like tRNA modifying enzyme [Natrinema altunense JCM 12890]
gi|445638501|gb|ELY91629.1| MiaB-like tRNA modifying enzyme [Natrinema altunense JCM 12890]
Length = 417
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 132/263 (50%), Gaps = 21/263 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFDRADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL AI DG +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLHRLLEAIC---EIDGDFRVRVGMANPKGVHGIREELAAV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
H +Y FLH PVQSGSD VL
Sbjct: 228 FAEHDELYDFLHAPVQSGSDDVL 250
>gi|188996756|ref|YP_001931007.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sulfurihydrogenibium sp. YO3AOP1]
gi|229891027|sp|B2V930.1|MIAB_SULSY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|188931823|gb|ACD66453.1| RNA modification enzyme, MiaB family [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 437
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 145/279 (51%), Gaps = 20/279 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y+KTFGC N +DSE MAG L GY T+N EEAD+ L+NTC+V+ + + + +
Sbjct: 3 FYIKTFGCQMNVNDSEKMAGILQTLGYTPTENWEEADVILVNTCSVREKPDQKVLSALGE 62
Query: 121 CKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-V 171
K KK + V GC+ Q G ++ + IV G I + ++EE G++ +
Sbjct: 63 FKKVKKHNPNAVIGVCGCLAQRAGYEIYQKAPFIDIVFGTTNIHHLPNLLEEAKSGNKAI 122
Query: 172 RLLHR--KKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+L + LD P VR NK+ + + GC CTYC RG S + ++
Sbjct: 123 EILEEIDENENLLDQFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGRERSRRIGDILR 182
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V+ ++ DGVKE+ L ++ AYG+D G V LL A VAE+ DG +R +P
Sbjct: 183 EVQYLVEDGVKEIHLIGQNVTAYGKDFGDVKFWELLKA-VAEV--DGVERIRFTTGHPRD 239
Query: 288 ILEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E +K +A++ P + LH+P+Q+GSD +L +
Sbjct: 240 LDEDTIKVMADL---PQICEALHLPIQAGSDRILQAMDR 275
>gi|254166896|ref|ZP_04873750.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
gi|197624506|gb|EDY37067.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
Length = 386
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 127/243 (52%), Gaps = 22/243 (9%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
M GQ A G + EEAD+ LI TC V +++ M I + K K +VV GC+P
Sbjct: 1 MLGQ--AMG-EIVSRPEEADVILIGTCVVIEHTENRMLRRIEELKRYGKKIVVYGCLPSA 57
Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILP 197
++L +++ V I + E+ E L L R + + + V +P
Sbjct: 58 RKELLDIDVVPIATWE-----FEMAGEILN------LDRSPMDEVFIWDA-----VATIP 101
Query: 198 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 257
I GCLG CTYC T+ ARG + S + E ++ V+ + E+ +S++DT AYGRDIG
Sbjct: 102 IANGCLGQCTYCITRLARGRVKSRSKEWILRLVKKALEQRAVEIRISAQDTAAYGRDIGT 161
Query: 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
L L+N+I A +P G LR+GM P L L E+ + +P VY FLH+PVQSG +
Sbjct: 162 ELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELIDAYSNPKVYKFLHLPVQSGDN 218
Query: 318 AVL 320
+L
Sbjct: 219 EIL 221
>gi|390938904|ref|YP_006402642.1| MiaB family RNA modification protein [Desulfurococcus fermentans
DSM 16532]
gi|390192011|gb|AFL67067.1| RNA modification enzyme, MiaB family [Desulfurococcus fermentans
DSM 16532]
Length = 432
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 145/284 (51%), Gaps = 36/284 (12%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+SD M + G+ L ++ E+AD ++INTC V+ ++ M I +
Sbjct: 3 VYIETYGCALNKSDEALMVESILREGHVLVNSIEDADTFIINTCIVRLDTEYHMVKRIRE 62
Query: 121 CKSAK----KPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
K L+VAGC+ + LK S+V Q + EV++
Sbjct: 63 LYEVASRTGKKLIVAGCMAKAEPYTVLKIAPEASLVSPQNSALITEVLKT---------- 112
Query: 175 HRKKLPALDLPKVRRNKFVEI------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
R K+ +D + R + + +PI GCL C++C TKHAR L S++++++V
Sbjct: 113 -RGKIVLIDGLRERDRIGIHVEDRIAPIPIQEGCLSDCSFCITKHARRILVSHSIDAVVK 171
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V + +G E+ L+ D G YG D+ LP L+ + + G M+RIGM NP
Sbjct: 172 AVERAVRNGAVEIQLTGMDLGTYGLDLYKTRKLPELVKEVSRRV--SGEYMVRIGMINP- 228
Query: 287 FILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSVSQK 325
EHL+ I + L VY FLH+P+QSGS+ VLSV ++
Sbjct: 229 ---EHLRHILDDLIDAINESSKVYRFLHIPLQSGSNKVLSVMRR 269
>gi|18313702|ref|NP_560369.1| hypothetical protein PAE2939 [Pyrobaculum aerophilum str. IM2]
gi|18161255|gb|AAL64551.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 416
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 142/272 (52%), Gaps = 34/272 (12%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC ++D+E + +L G L N EE+D+ LI TC V+ + I
Sbjct: 4 VYVETYGCWLAKADAEILRQRL---GLELASNVEESDVVLIYTCAVREDGEVRQLARIRD 60
Query: 121 CKSAKKPLVVAGCVPQ-GSRDLKELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ + ++VAGC+ + +K L G +++ QQ++ G E + K
Sbjct: 61 LAKSGREMIVAGCLARLRPYTIKSLAPGAALIYPQQVE----------GGPEREM---KI 107
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIA 235
LP V +P+ VGCLG CT+C TK+ R G++ S E +V +V+ +A
Sbjct: 108 LPEFS------GGVVYTVPLQVGCLGNCTFCATKYTRGGAGYVKSADPEEVVRKVKKAVA 161
Query: 236 DGVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +E++L+ +D YG ++ G NLP LL I+ E+ DG +RIGM+ P +
Sbjct: 162 MGAREIYLTGQDVITYGFEMRWKRGWNLPDLLERILKEV--DGEYRIRIGMSEPWVFEKF 219
Query: 292 LKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSV 322
+I +V+ R VY + H+PVQSGSD VL V
Sbjct: 220 ADQILDVVKRDRRVYRYFHLPVQSGSDKVLRV 251
>gi|20094517|ref|NP_614364.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
gi|19887629|gb|AAM02294.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
Length = 423
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 137/266 (51%), Gaps = 10/266 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ ++ +GC+ N D + L G+ + +++E AD+ ++ TC V+ + M + +
Sbjct: 4 VAVEVYGCAANHDDGRLVRELLRREGFEVVEDAENADVAVLLTCIVRDSVDARMVNRMRE 63
Query: 121 CKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRK 177
+ + P VVAGC P+ R K ++VG + +DR+ E V L+G V L R+
Sbjct: 64 LE--RVPTVVAGCFPEAYPERARKLRPDAALVGPRHLDRIPEAVRAVLRGDRVEFLGERE 121
Query: 178 KLP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ D P+ N I+PI GC C YC K ARG+L S+ E ++ RV+ +
Sbjct: 122 DIDWKADAPRELPN-LAAIVPIAEGCPNRCAYCAVKLARGNLRSFPPERILRRVKRELER 180
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G E+ L+++DT YG D G N+ LL +V +L +R+GM NP ++A
Sbjct: 181 GAVEIHLTAQDTATYGLDRGTNVVELLEDVV-DLCSRYGARVRLGMFNPGHAYPISDDLA 239
Query: 297 EVL--RHPCVYSFLHVPVQSGSDAVL 320
++ R +Y +H+PVQSG D VL
Sbjct: 240 DLFASRDDVLYRSIHMPVQSGDDEVL 265
>gi|448440848|ref|ZP_21588846.1| MiaB-like tRNA modifying enzyme [Halorubrum saccharovorum DSM 1137]
gi|445689756|gb|ELZ41982.1| MiaB-like tRNA modifying enzyme [Halorubrum saccharovorum DSM 1137]
Length = 442
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 133/264 (50%), Gaps = 17/264 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHHPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ + LVV GC+ ++ E V +I EV L G E +
Sbjct: 63 ELEDVTAELVVTGCMALAQGEMFEEAEVD----AEILHWDEVPSYVLNG-ECPTVTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+AEV
Sbjct: 171 EIRVTGQDTGVYGWDDGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAEV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLS 321
+ +Y F+H PVQSGSD VL
Sbjct: 228 FADNEELYDFIHAPVQSGSDEVLE 251
>gi|448464159|ref|ZP_21598382.1| MiaB-like tRNA modifying enzyme [Halorubrum kocurii JCM 14978]
gi|445815946|gb|EMA65863.1| MiaB-like tRNA modifying enzyme [Halorubrum kocurii JCM 14978]
Length = 440
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 132/264 (50%), Gaps = 17/264 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ + LVV GC+ + E GV +I EV L G E +
Sbjct: 63 ELEDETAELVVTGCMALAQGETFEEAGVDA----EILHWDEVPSYVLNG-ECPTVTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+ EV
Sbjct: 171 EIRVTGQDTGVYGWDDGDRKLPELLDRI---CDIDGEFRVRLGMANPGGIHGIHEELVEV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLS 321
+ +Y F+H PVQSGSD VL
Sbjct: 228 FADNEELYDFVHAPVQSGSDEVLE 251
>gi|452207624|ref|YP_007487746.1| MiaB-like tRNA modifying enzyme [Natronomonas moolapensis 8.8.11]
gi|452083724|emb|CCQ37039.1| MiaB-like tRNA modifying enzyme [Natronomonas moolapensis 8.8.11]
Length = 414
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 137/268 (51%), Gaps = 19/268 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GC+ N+ +S + L G+ + + EAD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCTSNRGESRRIERSLRDAGHRPVEGTAEADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ +S L+V GC+ L + E + + VQ + E V + E
Sbjct: 63 ELESETADLIVTGCMA-----LAQGEAFADLDVQVLH--WEDVPSAVTNGECPTTTPDAE 115
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S T+E+ V + R ++ G K
Sbjct: 116 PILD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPTIEANVEKARALVHAGAK 168
Query: 240 EVWLSSEDTGAYGRDIGVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+V
Sbjct: 169 EIRVTGQDTGVYGWDTGERKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELADV 225
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ +Y F+H PVQSGSD VL ++
Sbjct: 226 FADNRKLYDFIHAPVQSGSDEVLEAMRR 253
>gi|300710670|ref|YP_003736484.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
gi|448294994|ref|ZP_21485069.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
gi|299124353|gb|ADJ14692.1| MiaB-like tRNA modifying enzyme [Halalkalicoccus jeotgali B3]
gi|445585294|gb|ELY39590.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
Length = 414
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 136/271 (50%), Gaps = 39/271 (14%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ EAD+ ++NTCTV +++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRAAGPAEADVAILNTCTVVEKTETNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+ L+V GC+ L + E S V + R++H ++P
Sbjct: 65 EEETTDLIVTGCMA-----LAQSEAFSDV-------------------DARVMHWDEVPQ 100
Query: 182 LDL--------PKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L P V V ILPI GC+ C+YC TKHA G + S T+E+ V + R
Sbjct: 101 AALNGECPTPGPGVEPVLEGVVGILPIARGCMSNCSYCITKHATGRVDSPTIEANVEKAR 160
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G KE+ ++ +DTG YG D G +LP LL+ I A +G +R+GM NP I
Sbjct: 161 ALVHAGAKELRITGQDTGVYGWDDGERSLPELLSRICA---IEGEFRVRLGMANPGGIHG 217
Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVL 320
+E+AEV + +Y F+H PVQSGSD VL
Sbjct: 218 IHEELAEVFAENEKLYDFIHAPVQSGSDEVL 248
>gi|15790759|ref|NP_280583.1| hypothetical protein VNG1861C [Halobacterium sp. NRC-1]
gi|169236502|ref|YP_001689702.1| hypothetical protein OE3617F [Halobacterium salinarum R1]
gi|10581306|gb|AAG20063.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727568|emb|CAP14356.1| MiaB-like tRNA modifying enzyme [Halobacterium salinarum R1]
Length = 432
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 131/262 (50%), Gaps = 16/262 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ + + +AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRDIERRLRDAGHHKVETAADADVAILNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
L+V GC+ L + E + V + V E + E P
Sbjct: 65 ADETADLIVTGCMA-----LAQGEAFADADVDAQVLHWDDVPEAVTNGECPTTTPDAEPI 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
LD V ILPI GC+ C+YC TK A G + S VE V + R ++ G KE+
Sbjct: 120 LD-------GVVGILPIARGCMSNCSYCITKQATGRVDSPPVEENVEKARALVHAGAKEI 172
Query: 242 WLSSEDTGAYGRDIGVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 299
++ +DTG YG D G LP LL I E+ +G +R+GM NP + +E+A V
Sbjct: 173 RITGQDTGVYGWDTGERKLPELLERIATEI--EGEFRVRVGMANPGGVHGIREELAAVFA 230
Query: 300 RHPCVYSFLHVPVQSGSDAVLS 321
H +Y+FLH PVQSGSD VL+
Sbjct: 231 EHDEIYNFLHAPVQSGSDDVLA 252
>gi|219853312|ref|YP_002467744.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
gi|219547571|gb|ACL18021.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
Length = 420
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 132/266 (49%), Gaps = 29/266 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N +D+ + L A G + EEAD ++NTCTV P++ M L
Sbjct: 26 VYLEEYGCTFNHADTLALVEVLKAQGCTIVPTPEEADAVVLNTCTVIGPTERLM--LRQM 83
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE-ETLKGHEVRLLHRKKL 179
+ + L + GC+P Q+D + EV + + E+R
Sbjct: 84 RRYSGHDLYLTGCMP----------------AVQMDAICEVCSPKVIPPEEIR------- 120
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
A L + ++ + GC G C+YC T++ARG L S+ + RV+ + +G
Sbjct: 121 AAYTLVNTTVPSAIGVVQVGQGCAGRCSYCITRNARGPLQSFQPPDIYNRVQQAVDNGAV 180
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
EV L+ +D ++G D+G +LP LL I A P G LR+GM NP +L L ++
Sbjct: 181 EVQLTGQDLSSWGLDLGRSLPDLLRGITA-FP--GDYRLRLGMMNPATVLPILDDLIAAY 237
Query: 300 RHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ ++ FLH+P+QSGSD VL+ +
Sbjct: 238 QSDRIFQFLHLPIQSGSDRVLAAMNR 263
>gi|374629251|ref|ZP_09701636.1| MiaB-like tRNA modifying enzyme [Methanoplanus limicola DSM 2279]
gi|373907364|gb|EHQ35468.1| MiaB-like tRNA modifying enzyme [Methanoplanus limicola DSM 2279]
Length = 403
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 140/261 (53%), Gaps = 27/261 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++ +T+GC+ N +D+ + + G + ++EAD +INTCTV + ++ AM + A
Sbjct: 9 VHFETYGCTFNYADTGKLMDIALSQGCKVVP-ADEADTVVINTCTVVAQTERAM--IRAV 65
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ + +VV GC+P +L + V+ R++ + E + H R+ H +
Sbjct: 66 QDYSDRDVVVTGCMPVVQAEL-------LRSVRPDIRII--LPEEIYRHSERIGHSVE-- 114
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
V ++ + GCLG+C+YC T+ ARG L S V +V +I++GV E
Sbjct: 115 ----------GGVGVVQMGTGCLGSCSYCITRFARGELHSNPVADIVSETERLISEGVHE 164
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ L+ +D AYG D G NL LL A+ AE+ +G +R GM NP +L +L EI +
Sbjct: 165 IQLTGQDVSAYGYDNGENLGTLLKAM-AEV--EGEFEIRAGMMNPKTVLPYLDEIIDGFL 221
Query: 301 HPCVYSFLHVPVQSGSDAVLS 321
++ F+H+PVQSGSD VLS
Sbjct: 222 SDKIFKFIHIPVQSGSDRVLS 242
>gi|342218658|ref|ZP_08711266.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
135-E]
gi|341589354|gb|EGS32635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
135-E]
Length = 443
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 141/277 (50%), Gaps = 18/277 (6%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+ G + Y+ T+GC N SDSE AGQL A GY +T++ + AD+ L+NTC V+ ++
Sbjct: 3 VLGNKFAYIATYGCQMNSSDSERYAGQLEALGYHMTEDMDMADVILLNTCCVRETAEGKT 62
Query: 115 DTLIAKCKSAKK---PLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
I + K K+ LV+A GC+ Q +D + V +V G I ++ E+++
Sbjct: 63 LGKIGELKHYKERNPKLVIAITGCMAQEWQDRLFERAPHVDLVIGTHNIHKLTELLQVRQ 122
Query: 167 KGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
H L LPA DLP R +KF +PI GC CTYC H RG S ++
Sbjct: 123 GKHA--LAADMSLPAFHDLPTKRFHKFFAWVPIMNGCNKYCTYCIVPHVRGREVSRPLQD 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
+V V+ + G KE+ L ++ +YG D+ G + L++A+ G +R +
Sbjct: 181 IVAEVKALGRAGYKEITLLGQNVNSYGLDLKDGTDFSSLVDALE---DAKGVERIRYMTS 237
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+P + + K I + R V LH+PVQSGS+A L
Sbjct: 238 HPKDMTK--KMIDAIARSTRVVHHLHLPVQSGSNATL 272
>gi|86607496|ref|YP_476259.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. JA-3-3Ab]
gi|123504633|sp|Q2JQX6.1|MIAB_SYNJA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|86556038|gb|ABD00996.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp.
JA-3-3Ab]
Length = 453
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 141/273 (51%), Gaps = 19/273 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL-- 117
T Y TFGC N++DSE MAG L + GY ++ +AD+ L NTCT++ ++ + +
Sbjct: 5 TYYTITFGCQMNRADSERMAGILESLGYVPAEDELQADLVLFNTCTIRDNAEQKVYSYLG 64
Query: 118 IAKCKSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
I + K P L+VAGCV Q G R L+ + + +V G Q ++R+ +++ + G++V
Sbjct: 65 IQAQRKRKNPAIKLIVAGCVAQQEGERLLRRVPELDLVMGPQYVNRLGDLLAQVEAGNQV 124
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
++P D+ K RR+ V INV GC CTYC RG S +++
Sbjct: 125 VATEPVEIPE-DITKPRRDSRVTAW-INVIYGCNERCTYCIVPLVRGREQSRQPQAIRAE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+ V G +EV L ++ AYGRD+ NL LL + + +G +R ++P +
Sbjct: 183 IEDVARAGYREVTLLGQNIDAYGRDLDPKTNLASLLRFVHS---VEGIERIRFATSHPRY 239
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E L IA P V H+P Q+GSDAVL
Sbjct: 240 FTEEL--IATCAELPKVCEHFHIPFQAGSDAVL 270
>gi|448459772|ref|ZP_21596822.1| MiaB-like tRNA modifying enzyme [Halorubrum lipolyticum DSM 21995]
gi|445808224|gb|EMA58298.1| MiaB-like tRNA modifying enzyme [Halorubrum lipolyticum DSM 21995]
Length = 440
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 135/263 (51%), Gaps = 17/263 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ ++ LVV GC+ + E V +I EV L G E +
Sbjct: 63 ELEAETAELVVTGCMALAQGEAFEEADVD----AEILHWDEVPSHVLNG-ECPTVTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE+ V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVETNVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+V
Sbjct: 171 EIRVTGQDTGVYGWDKGDRKLPELLDRI---CDIDGEFRVRLGMANPGGIHGIHEELADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
R+ +Y F+H PVQSGSD VL
Sbjct: 228 FARNEELYDFIHAPVQSGSDDVL 250
>gi|448339730|ref|ZP_21528742.1| MiaB-like tRNA modifying enzyme [Natrinema pallidum DSM 3751]
gi|445619146|gb|ELY72691.1| MiaB-like tRNA modifying enzyme [Natrinema pallidum DSM 3751]
Length = 417
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 132/263 (50%), Gaps = 21/263 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFDRADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL AI DG +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLHRLLEAIC---EIDGDFRVRVGMANPKGVHGIREELAAV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGSD VL
Sbjct: 228 FAEYDELYDFLHAPVQSGSDDVL 250
>gi|448350753|ref|ZP_21539564.1| MiaB-like tRNA modifying enzyme [Natrialba taiwanensis DSM 12281]
gi|445635625|gb|ELY88792.1| MiaB-like tRNA modifying enzyme [Natrialba taiwanensis DSM 12281]
Length = 417
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 132/262 (50%), Gaps = 19/262 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHQVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 SEETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGSD VL
Sbjct: 229 AEYDELYGFLHAPVQSGSDDVL 250
>gi|150400142|ref|YP_001323909.1| MiaB-like tRNA modifying protein [Methanococcus vannielii SB]
gi|150012845|gb|ABR55297.1| MiaB-like tRNA modifying enzyme [Methanococcus vannielii SB]
Length = 421
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 138/269 (51%), Gaps = 21/269 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D+E + + F + +T + ++DI ++NTC V+ ++ M + I
Sbjct: 7 IYIEGYGCTLNTADTEIIKNSIKEFQNFEITTDLNDSDIIVVNTCIVRQETEHRMISRIE 66
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 171
KS K +VVAGC+ + + ++ ++ G + +E E+T E
Sbjct: 67 YFKSLNKKVVVAGCMAKALPKKIEYFSDCMVLPREAQNSGNILFKKFIENKEKT--NFEN 124
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L + L K+ + +PI+ GCLG C+YC K ARG L SY + +V +
Sbjct: 125 NLSEK-------LNKLSSKGLISPMPISEGCLGNCSYCIVKKARGTLESYDRKLIVKKAM 177
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
I G K + ++++DT YG D NL L++ I +E+P + +RIGM + F
Sbjct: 178 EFINSGTKCLLITAQDTACYGYDNNDNLSNLIDDI-SEIPEKFA--MRIGMMHAKFAEPI 234
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L E+ E + V FLH+P+QSG + VL
Sbjct: 235 LDELVESFKSEKVVKFLHLPIQSGDNQVL 263
>gi|448311468|ref|ZP_21501229.1| MiaB-like tRNA modifying protein [Natronolimnobius innermongolicus
JCM 12255]
gi|445604799|gb|ELY58741.1| MiaB-like tRNA modifying protein [Natronolimnobius innermongolicus
JCM 12255]
Length = 417
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 132/262 (50%), Gaps = 19/262 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
A L V GC+ QG +E + G Q+ EV E G E
Sbjct: 65 SEATADLYVTGCMALAQG----EEFARADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAD 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPPIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGSD VL
Sbjct: 229 AAYDELYDFLHAPVQSGSDDVL 250
>gi|397780037|ref|YP_006544510.1| methylthiotransferase [Methanoculleus bourgensis MS2]
gi|396938539|emb|CCJ35794.1| Putative methylthiotransferase AF_1247 [Methanoculleus bourgensis
MS2]
Length = 448
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 134/265 (50%), Gaps = 28/265 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++++GC++N +D+ + L G LT +EAD +INTCTV ++ M +A
Sbjct: 44 VYIESYGCTYNHADARRLEAILEGLGCRLT-GPDEADAVIINTCTVIGATERKMLRRLAA 102
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
A + L V GC+P R+L + V V D + HE +
Sbjct: 103 F--ADRDLYVTGCMPLVQREL--INSVCTAHVIHPDEI----------HE-------RAS 141
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
+ P + ++ + GC+G C+YC T+ ARG L S E ++ VR ++ G E
Sbjct: 142 GVGSPGA---GAIGVVQVASGCVGRCSYCITRLARGRLKSAPPEEILDAVRRLVRSGAFE 198
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ L+ +D A+G D G LP LL AI E+P G +R+GM +P +L L + +
Sbjct: 199 IQLTGQDVAAWGLDRGEALPDLLQAIT-EIP--GRFAVRLGMMHPAPVLRILDPLIDAYA 255
Query: 301 HPCVYSFLHVPVQSGSDAVLSVSQK 325
++ FLH+PVQSGSDAVL Q+
Sbjct: 256 SEKMFRFLHLPVQSGSDAVLERMQR 280
>gi|322372210|ref|ZP_08046751.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
paucihalophilus DX253]
gi|320548219|gb|EFW89892.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
paucihalophilus DX253]
Length = 417
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 135/263 (51%), Gaps = 20/263 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ + E+AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRQIESALRDAGHYRVEGPEQADVAIMNTCTVVEKTERNMVRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+S L++ GC+ QG E I+ + V E G V
Sbjct: 65 QSETADLIITGCMALAQGDEFRTEDVDAQIMHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L +LL+ I E+ +G +R+GM NP + +E+A+V
Sbjct: 171 ELRITGQDTGVYGWDRGERKLHVLLDRICNEI--EGDFRVRVGMANPKGVHGIREELAQV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
+ +Y+F+H PVQSGS+ VL
Sbjct: 229 FAENDELYNFIHAPVQSGSNDVL 251
>gi|410458684|ref|ZP_11312441.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
azotoformans LMG 9581]
gi|409931034|gb|EKN68022.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
azotoformans LMG 9581]
Length = 515
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG L+ G+ TD++EEADI L+NTC V+ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGILTEMGFENTDSTEEADIILLNTCAVRENAENKVFGEIGH 130
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q +R L++ + V ++ G I R+ ++++E + G E
Sbjct: 131 LKQLKREKPDLILGVCGCMSQEEGVVNRLLQKHQQVDLIFGTHNIHRLPQLLKEAMFGKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK+R K + I GC CTYC + RG S E ++
Sbjct: 191 RVVEVWSKEGDVIENLPKIRNGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIID 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 251 EVRDLARQGYKEITLLGQNVNAYGKDFE-DMKYGLGDLMDEIRKIDIPRIRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 310 DDHLIEV--LAKGGNLMDHIHLPVQSGSTEMLKI 341
>gi|397775943|ref|YP_006543489.1| MiaB-like tRNA modifying enzyme [Natrinema sp. J7-2]
gi|397685036|gb|AFO59413.1| MiaB-like tRNA modifying enzyme [Natrinema sp. J7-2]
Length = 417
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 132/264 (50%), Gaps = 23/264 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
L + GC+ QG + D +++G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQGEAFDRADVDG-------QVLHWDEVPEAVTNG-ECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G L LL I DG +R+GM NP + +E+A
Sbjct: 170 KEIRITGQDTGVYGWDEGDRKLHRLLEEIC---EIDGDFRVRVGMANPKGVHGIREELAA 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVL 320
V H +Y FLH PVQSGSD VL
Sbjct: 227 VFAEHDELYDFLHAPVQSGSDDVL 250
>gi|149183373|ref|ZP_01861809.1| YmcB [Bacillus sp. SG-1]
gi|148848916|gb|EDL63130.1| YmcB [Bacillus sp. SG-1]
Length = 521
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 136/274 (49%), Gaps = 14/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TDN+++AD+ L+NTC ++ +++ + +
Sbjct: 69 FYIRTYGCQMNEHDTEVMAGIFMALGYEATDNTDDADVILLNTCAIRENAENKVFGELGH 128
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--KG 168
K K+ + V GC+ Q ++ LK V I G I R+ ++ E K
Sbjct: 129 LKHLKREKPELLIGVCGCMSQEESVVNKILKTYHQVDMIFGTHNIHRLPNILNEAYMSKA 188
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 189 MVVEVWSKEGDVIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 248
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G +EV L ++ AYG+DI L ++ EL +R ++P
Sbjct: 249 EVRHLAAQGYQEVTLLGQNVNAYGKDIEDLENYGLGDLMDELRKIDIPRIRFTTSHPRDF 308
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS AVL +
Sbjct: 309 DDHLIEV--LAKKGNLVEHIHLPVQSGSSAVLKI 340
>gi|148269423|ref|YP_001243883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
petrophila RKU-1]
gi|170288080|ref|YP_001738318.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
RQ2]
gi|229891014|sp|A5IJD4.1|MIAB_THEP1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891017|sp|B1L8F3.1|MIAB_THESQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|147734967|gb|ABQ46307.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga petrophila
RKU-1]
gi|170175583|gb|ACB08635.1| RNA modification enzyme, MiaB family [Thermotoga sp. RQ2]
Length = 443
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-AMDTL-- 117
Y+KTFGC N++DSE MAG L G+ EEAD+ +INTC V+ S+ A L
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 118 IAKCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
+ K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVLKVTEAVKRALQGEKVALFE 122
Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H + +LP++R +K + I GC CTYC + RG S +E ++ VR +
Sbjct: 123 DHLDEYTH-ELPRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVREL 181
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSDE 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L E+ + R+P V +H+PVQSGS+ +L + +
Sbjct: 239 LIEV--IARNPKVAKSVHLPVQSGSNRILKLMNR 270
>gi|448366100|ref|ZP_21554354.1| MiaB-like tRNA modifying protein [Natrialba aegyptia DSM 13077]
gi|445654709|gb|ELZ07560.1| MiaB-like tRNA modifying protein [Natrialba aegyptia DSM 13077]
Length = 417
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 131/261 (50%), Gaps = 17/261 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKKLP 180
L + GC+ L + E + V Q+ EV E G E P
Sbjct: 65 SEETADLFITGCMA-----LAQGEEFAQADVDSQVLHWDEVPEAVTNG-ECPTTTPDAEP 118
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE
Sbjct: 119 ILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAKE 171
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 299
+ ++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+V
Sbjct: 172 IRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVFA 229
Query: 300 RHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGSD VL
Sbjct: 230 EYDELYGFLHAPVQSGSDDVL 250
>gi|403252391|ref|ZP_10918701.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
EMP]
gi|402812404|gb|EJX26883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
EMP]
Length = 443
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 141/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-AMDTL-- 117
Y+KTFGC N++DSE MAG L G+ EEAD+ +INTC V+ S+ A L
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 118 IAKCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
+ K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVPKVTEAVKRALQGEKVALFE 122
Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H + +LP++R +K + I GC CTYC + RG S +E ++ VR +
Sbjct: 123 DHLDEYTH-ELPRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVREL 181
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +EV ++ AYG+D+ G +L LL +G + + P
Sbjct: 182 AKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSNE 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L E+ + R+P V +H+PVQSGS+ +L + +
Sbjct: 239 LIEV--IARNPKVAKSVHLPVQSGSNRILKLMNR 270
>gi|315651497|ref|ZP_07904518.1| 2-methylthioadenine synthetase [Lachnoanaerobaculum saburreum DSM
3986]
gi|315486232|gb|EFU76593.1| 2-methylthioadenine synthetase [Lachnoanaerobaculum saburreum DSM
3986]
Length = 440
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 139/272 (51%), Gaps = 21/272 (7%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLIAKC 121
M + GC N DSE M G ++ G+ TD EEAD+ +INTC ++S + +++ ++
Sbjct: 5 MVSLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEADVMIINTCGFIQSAKEESINAILEAS 64
Query: 122 KSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH-EVRL 173
K + K L+V GC+ Q +D +KE+ V +++G D++VE VEE L G +
Sbjct: 65 KLKEVGNLKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEEVLGGEIKNEF 124
Query: 174 LHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
L +LP++ K R+N + L I GC CTYC RG+ SY ++ L+ +
Sbjct: 125 LDLDRLPSI--SKKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSYPLDDLIAQA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + G+KE+ L +++T YG DI LP LL + +G +RI P I
Sbjct: 183 KDLATQGIKELILVAQETTLYGVDIYGKKTLPKLLKELA---KIEGIEWIRILYCYPEEI 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ L ++ C Y L +P+Q SD +L
Sbjct: 240 TDELIDVIASEDKVCKY--LDIPIQHASDNIL 269
>gi|448529140|ref|ZP_21620399.1| MiaB-like tRNA modifying enzyme [Halorubrum hochstenium ATCC
700873]
gi|445709573|gb|ELZ61399.1| MiaB-like tRNA modifying enzyme [Halorubrum hochstenium ATCC
700873]
Length = 450
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 133/264 (50%), Gaps = 19/264 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDITAELVVTGCMA-----LAQGEQFAEADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S ++E V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSIEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+AE
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAE 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVL 320
V + +Y F+H PVQSGSD VL
Sbjct: 227 VFAANEELYDFIHAPVQSGSDDVL 250
>gi|448424292|ref|ZP_21582342.1| MiaB-like tRNA modifying enzyme [Halorubrum terrestre JCM 10247]
gi|445682285|gb|ELZ34704.1| MiaB-like tRNA modifying enzyme [Halorubrum terrestre JCM 10247]
Length = 441
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 133/264 (50%), Gaps = 19/264 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVL 320
V + +Y F+H PVQSGSD VL
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVL 250
>gi|218884393|ref|YP_002428775.1| MiaB family RNA modification protein [Desulfurococcus kamchatkensis
1221n]
gi|218766009|gb|ACL11408.1| RNA modification enzyme, MiaB family [Desulfurococcus kamchatkensis
1221n]
Length = 432
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 143/284 (50%), Gaps = 36/284 (12%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+SD M + G+ L ++ E+AD +INTC V+ ++ M I +
Sbjct: 3 VYIETYGCALNKSDEALMVENILREGHELVNSIEDADTLIINTCIVRLDTEYHMVKRIRE 62
Query: 121 CKSAK----KPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
K L+VAGC+ + LK S+V Q + EV++
Sbjct: 63 LYEVASRTGKKLIVAGCMAKAEPYTVLKIAPEASLVSPQNSALITEVLKT---------- 112
Query: 175 HRKKLPALDLPKVRRNKFVEI------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
R K+ +D + R + + +PI GCL C++C TKHAR L S+ ++++V
Sbjct: 113 -RGKVILIDGLRERDRIGIHVEDRIAPIPIQEGCLSNCSFCITKHARRILVSHGIDAVVK 171
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V + +G E+ L+ D G YG D+ LP L+ + + G M+RIGM NP
Sbjct: 172 AVERAVRNGAVEIQLTGMDLGTYGLDLYKTRKLPELVKEVSRRV--SGEYMIRIGMINP- 228
Query: 287 FILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSVSQK 325
EHL+ I + L VY FLH+P+QSGS+ VLSV ++
Sbjct: 229 ---EHLRYILDDLIDAINESSKVYRFLHIPLQSGSNKVLSVMRR 269
>gi|317490506|ref|ZP_07948986.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
gi|316910399|gb|EFV32028.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
Length = 452
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 138/280 (49%), Gaps = 18/280 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++TFGC N+ DSE +AG L G D E+ADI TC V+ + + + +A
Sbjct: 2 TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLYGQVA 61
Query: 120 KCKS---------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ +K+ + V GC+ Q G + + EL+ + +V G + + ++E L+
Sbjct: 62 SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 121
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
GH+V +L +LP R +++ LPI +GC C+YC + RG S +E
Sbjct: 122 EGGHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 181
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 182 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHP 239
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ + + LR + LH+PVQSGSDAVL+ +
Sbjct: 240 KDLNDEVVGRFATLR--SLMPALHLPVQSGSDAVLAAMNR 277
>gi|448448754|ref|ZP_21591339.1| MiaB-like tRNA modifying enzyme [Halorubrum litoreum JCM 13561]
gi|445814228|gb|EMA64195.1| MiaB-like tRNA modifying enzyme [Halorubrum litoreum JCM 13561]
Length = 441
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 133/265 (50%), Gaps = 19/265 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLS 321
V + +Y F+H PVQSGSD VL
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLE 251
>gi|405983202|ref|ZP_11041512.1| MiaB/RimO family radical SAM methylthiotransferase [Slackia
piriformis YIT 12062]
gi|404389210|gb|EJZ84287.1| MiaB/RimO family radical SAM methylthiotransferase [Slackia
piriformis YIT 12062]
Length = 451
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 144/285 (50%), Gaps = 26/285 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T + T+GC N+ DSE +AG L + G + E+A+I + TC ++ + + +
Sbjct: 7 KTFCLYTYGCQMNEHDSERIAGMLESHGAVQVSSVEQAEIAIFVTCCIREAADVRLMGQV 66
Query: 119 AKCKS---------AKKPLVVAGCVPQGSRDLKELEGV-----SIVGVQQIDRVVEVVEE 164
A K+ +K+ + + GC+ G RD ++L + G Q I+ +V ++E
Sbjct: 67 ASIKNIPLPQGSELSKRIVCIGGCI--GQRDAEKLPEALPHVDVVFGTQNIEHLVSLIEA 124
Query: 165 TL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
+ GH+V +L + +LP R + + LP+ VGC CTYC + RG S T
Sbjct: 125 AIIQGGHQVEVLDSSTSFSTELPSKRVHPWSAWLPVTVGCNNFCTYCIVPYVRGRERSRT 184
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI--VAELPPDGSTMLRI 280
+E +V R ++ADGVKE+ L ++ +YGRD+ P + + VAE G LR
Sbjct: 185 LEDVVEEARGLVADGVKEITLLGQNVNSYGRDL-YGEPRFADVLRGVAET---GVERLRF 240
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
++P + + E+ L + + LH+PVQSGSDA+L +
Sbjct: 241 ATSHPKDLTREVIELYGSLGN--LMPSLHLPVQSGSDAILKAMNR 283
>gi|325831353|ref|ZP_08164607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
gi|325486607|gb|EGC89055.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
Length = 459
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 138/280 (49%), Gaps = 18/280 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++TFGC N+ DSE +AG L G D E+ADI TC V+ + + + +A
Sbjct: 9 TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLYGQVA 68
Query: 120 KCKS---------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ +K+ + V GC+ Q G + + EL+ + +V G + + ++E L+
Sbjct: 69 SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 128
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
GH+V +L +LP R +++ LPI +GC C+YC + RG S +E
Sbjct: 129 EGGHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 188
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 189 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ + + LR + LH+PVQSGSDAVL+ +
Sbjct: 247 KDLNDEVVGRFATLR--SLMPALHLPVQSGSDAVLAAMNR 284
>gi|257076152|ref|ZP_05570513.1| oxidoreductase [Ferroplasma acidarmanus fer1]
Length = 400
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 131/266 (49%), Gaps = 24/266 (9%)
Query: 61 IYMKTFGCSHNQSDSE-YMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY +++GC+ +S+S Y+ L + ++ EEAD+ LI TC V ++ M I+
Sbjct: 3 IYFESYGCTLQKSESSLYLNKLLKDENNQIVNSPEEADLSLIGTCVVIKHTEDRMVKRIS 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ V GC+ + + E V + LK E R + L
Sbjct: 63 SLSKVSGNVQVLGCLATVNGNTIESGNVQV----------------LKPREFRSFYEGDL 106
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
+++ ++ + +PIN GC G+C +C + ARG L S ++ +V +V + +K
Sbjct: 107 DGIEI----KSDIYDGIPINQGCTGSCNFCISHIARGKLLSRGIDKIVNQVNMELDRNIK 162
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ +SS DT AYG+DIG +L L+N I + D LR+GM P + L ++ +
Sbjct: 163 EIRISSLDTAAYGKDIGTDLAELVNRISS---IDRDFYLRVGMLEPRNTYDILDKLVDAY 219
Query: 300 RHPCVYSFLHVPVQSGSDAVLSVSQK 325
RH V+ FLH+PVQS + VLS +
Sbjct: 220 RHDRVFKFLHLPVQSAENNVLSAMNR 245
>gi|11498846|ref|NP_070075.1| hypothetical protein AF1247 [Archaeoglobus fulgidus DSM 4304]
gi|2649334|gb|AAB89997.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 405
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 128/232 (55%), Gaps = 11/232 (4%)
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
E+A++ +IN+C V ++ + + K K +V+AGC+ + S++ + S +
Sbjct: 15 EDAEVVIINSCGVIDFTERKIIRRMLDLKREGKKVVLAGCLTRISKEALSVAD-SALSPD 73
Query: 154 QIDRVVEVVEETLKGH----EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209
+D VV+ V L G E R + + + L ++R N + I+ I+ GCLG C++C
Sbjct: 74 NLDMVVDAVYSALNGRKLFTERRFIDKAEFSHLKC-RLRENA-IAIVSISEGCLGKCSFC 131
Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268
TK ARG L S++++++V + G +E+ L+S+DTGAYG D G LP LL I +
Sbjct: 132 ATKFARGRLRSFSMDAIVREAERAVRAGYREIQLTSQDTGAYGMDKGRAMLPELLRKI-S 190
Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+ +G +R+GM NP + L E+ +Y FLH+PVQSG + +L
Sbjct: 191 EI--EGEFRVRVGMMNPQHAVRMLDELINAYSSEKIYKFLHIPVQSGDNRIL 240
>gi|402817481|ref|ZP_10867069.1| ribosomal protein S12 methylthiotransferase RimO [Paenibacillus
alvei DSM 29]
gi|402505003|gb|EJW15530.1| ribosomal protein S12 methylthiotransferase RimO [Paenibacillus
alvei DSM 29]
Length = 442
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 150/281 (53%), Gaps = 29/281 (10%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDT 116
TE I + T GC N DSE M+G + GY L +N E+A + ++NTC + + + +++T
Sbjct: 2 TEKIKIVTLGCDKNLVDSEIMSGLIYERGYELVENEEDATVIIVNTCGFIDAAKEESVNT 61
Query: 117 LIA----KCKSAKKPLVVAGCVPQGSRD-----LKELEGVSIVGVQQIDRVVEVVEETLK 167
++ K + K L+V+GC+ Q ++ + E++G IVG D++ ++V+E L+
Sbjct: 62 ILRLADLKETAELKALIVSGCLTQRYKEQLLDEMPEIDG--IVGTGDFDKINDIVDEALQ 119
Query: 168 GHE-VRLLHRKKLPALD----LP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
G + +R+ + P D LP KV ++ + I GC CT+C RG S
Sbjct: 120 GSKPIRVGN----PVFDYDRILPRKVATPRYTAYVKIAEGCDNNCTFCSIPIMRGKFRSR 175
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLR 279
T+ES++ V + GVKE+ L ++D+ YG D+ G LP L+N V+E+P G +R
Sbjct: 176 TMESILAEVAQLAEQGVKEISLIAQDSTNYGVDLYDGFKLPELMNK-VSEIP--GVEWVR 232
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ P F E L + + +P + ++ +P+Q D++L
Sbjct: 233 LHYAYPGFFTEELMDT--IASNPKICKYIDMPLQHSEDSIL 271
>gi|404482253|ref|ZP_11017480.1| ribosomal protein S12 methylthiotransferase RimO [Clostridiales
bacterium OBRC5-5]
gi|404344414|gb|EJZ70771.1| ribosomal protein S12 methylthiotransferase RimO [Clostridiales
bacterium OBRC5-5]
Length = 440
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLIA-- 119
M + GC N DSE M G ++ G+ TD EEA+I +INTC ++S + +++ ++
Sbjct: 5 MVSLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEAEIMIINTCGFIQSAKEESINAILEAA 64
Query: 120 --KCKSAKKPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH-EVRL 173
K + A K L+V GC+ Q +D +KE+ V +++G D++VE VE+ L G +
Sbjct: 65 RLKEEGALKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEDVLGGEIKNEF 124
Query: 174 LHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
L +LP++ R+N + L I GC CTYC RG+ SY ++ L+ +
Sbjct: 125 LDLDRLPSI--SNKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSYPIDDLIAQA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + A G+KE+ L +++T YG D+ +LP LL + +G +RI P I
Sbjct: 183 KDLAAQGIKELILVAQETTLYGVDLYGEKSLPKLLKELA---KVEGIEWIRILYCYPEEI 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ L E+ + V +L +P+Q SD +L
Sbjct: 240 TDELIEV--IANEDKVCKYLDIPIQHASDNIL 269
>gi|281411880|ref|YP_003345959.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila
RKU-10]
gi|281372983|gb|ADA66545.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila
RKU-10]
Length = 443
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 141/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-AMDTL-- 117
Y+KTFGC N++DSE MAG L G+ EEAD+ +INTC V+ S+ A L
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 118 IAKCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
+ K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVLKVTEAVKRALQGEKVALFE 122
Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H + DL ++R +K + I GC CTYC + RG S +E ++ VR +
Sbjct: 123 DHLDEYTH-DLSRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVREL 181
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSDE 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L E+ + R+P V +H+PVQSGS+ +L + +
Sbjct: 239 LIEV--IARNPKVAKSVHLPVQSGSNRILKLMNR 270
>gi|336253288|ref|YP_004596395.1| MiaB-like tRNA modifying protein [Halopiger xanaduensis SH-6]
gi|335337277|gb|AEH36516.1| MiaB-like tRNA modifying enzyme [Halopiger xanaduensis SH-6]
Length = 417
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 128/262 (48%), Gaps = 19/262 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D E AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPEVADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E I G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFRAADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S VE V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSNCSYCITKEATGKIDSPPVEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L + E+ +G +R+GM NP + +E+AEV
Sbjct: 171 EIRITGQDTGVYGWDTGERKLHELLERICEI--EGDFRVRVGMANPKGVHGIREELAEVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVL 320
H +Y FLH PVQSGSD VL
Sbjct: 229 AEHDELYDFLHAPVQSGSDDVL 250
>gi|448474662|ref|ZP_21602521.1| MiaB-like tRNA modifying enzyme [Halorubrum aidingense JCM 13560]
gi|445817969|gb|EMA67838.1| MiaB-like tRNA modifying enzyme [Halorubrum aidingense JCM 13560]
Length = 439
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 137/276 (49%), Gaps = 41/276 (14%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ + E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPAEGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ + LVV GC+ QG + +E E ID +LH
Sbjct: 63 ELAAETSDLVVTGCMALAQGEQ-FREAE---------ID--------------AEILHWD 98
Query: 178 KLPALDL----PKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++P L P V + V ILPI GC+ C+YC TK A G + S +VE V
Sbjct: 99 EVPTYALNGECPTVTPDAEPVLDGVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENV 158
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ R ++ G KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP
Sbjct: 159 EKARALVHAGAKEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPG 215
Query: 287 FILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLS 321
I +E+ V R+ +Y+F+H PVQSGSD VL+
Sbjct: 216 GIHGIHEELVGVFARNEELYNFIHAPVQSGSDEVLA 251
>gi|291522428|emb|CBK80721.1| SSU ribosomal protein S12P methylthiotransferase [Coprococcus catus
GD/7]
Length = 454
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 141/271 (52%), Gaps = 12/271 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI+ + GC N DSE M G L A G+ L D+ EADI ++NTC+ + + ++ T++
Sbjct: 10 TIFFVSLGCDKNLVDSEVMLGILRAHGFTLVDDEIEADIIVVNTCSFIHDAKEESIQTIL 69
Query: 119 AKCKSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEV 171
+ K L+V GC+ + +D + E+E V +++G + EVV E L+G +V
Sbjct: 70 EMAEMKHSCRCKALIVTGCMAERYKDEIMTEIEEVDAVIGTTSYQHIAEVVAEVLEGQKV 129
Query: 172 RLLHR-KKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + +P +D+ ++ + L I GC CTYC RG S++++ L+ +
Sbjct: 130 KQFDDLQAMPEVDVQRIMTTGGYSSYLKIAEGCDKHCTYCIIPKLRGSYRSHSMDYLIKQ 189
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
++ A GVKE+ + +++T YG D+ +L + +G + +R+ P I
Sbjct: 190 AESLAAQGVKELNIVAQETTVYGTDLYNGQKMLPELLKRLCRIEGLSWIRVLYCYPEEIN 249
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E L ++ + P + +L +P+Q GSDAVL
Sbjct: 250 EELIQV--IKEEPKICHYLDLPIQHGSDAVL 278
>gi|448396870|ref|ZP_21569318.1| MiaB-like tRNA modifying protein [Haloterrigena limicola JCM 13563]
gi|445673399|gb|ELZ25960.1| MiaB-like tRNA modifying protein [Haloterrigena limicola JCM 13563]
Length = 417
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 131/263 (49%), Gaps = 21/263 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E I G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFAQADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A DG +R+GM NP I +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEKICA---IDGDFRVRVGMANPKGIHGIREELADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGSD VL
Sbjct: 228 FAANDELYDFLHAPVQSGSDDVL 250
>gi|414160614|ref|ZP_11416880.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus simulans ACS-120-V-Sch1]
gi|410878134|gb|EKS26023.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus simulans ACS-120-V-Sch1]
Length = 513
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 139/275 (50%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++KT+GC N D+E MAG A GY L D+ +AD+ L+NTC ++ +++ + + I
Sbjct: 68 TFFIKTYGCQMNAHDTEVMAGIFEALGYTLADDMLKADVILLNTCAIRENAENKVFSEIG 127
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K K+ + V GC+ Q ++ LK + V I G I ++ E++EE K
Sbjct: 128 NLKHLKRDRPDCLIGVCGCMSQEESVVNKILKSFQNVDMIFGTHNIHKLPEILEEAYLSK 187
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ + ++ +LPKVR + F + I GC CTYC RG S E ++
Sbjct: 188 AMVIDVWSKEGDVIENLPKVRDDYFKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 247
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + G KE+ L ++ +YG+D+ ++ L + ++ +R ++P
Sbjct: 248 EEVRDLARQGYKEITLLGQNVNSYGKDLQ-DIEYGLGDLFEDIAKIDIPRVRFTTSHPWD 306
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+H+ E+ + + + +H+PVQSG+DAVL +
Sbjct: 307 FTDHMIEV--IAKGGNIVPHIHLPVQSGNDAVLKI 339
>gi|402312108|ref|ZP_10831038.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
ICM7]
gi|400370769|gb|EJP23751.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
ICM7]
Length = 475
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 139/276 (50%), Gaps = 19/276 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N DSE ++G L+ GY +N E+AD+ L NTCTV+ + + + + K +
Sbjct: 41 TFGCQMNARDSEKLSGILTGIGYMEAENEEDADLVLFNTCTVRENANDRLYGRVGQLKKS 100
Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
K+ + + GC+ Q + ++++++ + G I ++ E++ E T K V
Sbjct: 101 KEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFEHLTTKKQVVN 160
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ ++ LP R F + I GC C+YC + RG S E ++ +R
Sbjct: 161 VMESAEMIVEKLPNKREFAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDEIRG 220
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ADGVKE+ L ++ +YGR + ++ LL+ I DG LR +P + +
Sbjct: 221 LVADGVKEIMLLGQNVNSYGRGLEEEISFATLLDRIAQ---IDGLERLRFMTPHPKDLSD 277
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKI 326
+ E+ + + C + LH+P+QSGS A+L ++
Sbjct: 278 EVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRV 311
>gi|119871859|ref|YP_929866.1| RNA modification protein [Pyrobaculum islandicum DSM 4184]
gi|119673267|gb|ABL87523.1| RNA modification enzyme, MiaB family [Pyrobaculum islandicum DSM
4184]
Length = 415
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 139/268 (51%), Gaps = 30/268 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC ++D+E + +L GY N +EAD+ L+ TC V+ + I +
Sbjct: 4 IYVETYGCWLAKADAEILRQRL---GYEQVSNVDEADVILVYTCAVREDGEVRQLARIRE 60
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K L+VAGC L L +I + +++ E ++G + R +
Sbjct: 61 LVKLGKELIVAGC-------LARLRPYTIKSLAPHAKLIYPSE--IEGGKERSMK----- 106
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADG 237
LPK R + +P+ VGCLG CT+C TK+ RG G S + +V ++ +A G
Sbjct: 107 --TLPKYERG-LIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSADPDDVVRHIKEAVAKG 163
Query: 238 VKEVWLSSEDTGAYGRDIGVN----LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+E++L+ +D YG D G LP LL+ I+ E+ +G +RIGM+ P + +
Sbjct: 164 AREIYLTGQDVITYGFDAGWRGGWTLPDLLDRILKEV--EGEYRVRIGMSEPWIFEKFVD 221
Query: 294 EIAEVL-RHPCVYSFLHVPVQSGSDAVL 320
++ +++ R VY + H+PVQSGSD VL
Sbjct: 222 QLLDIIKRDHRVYRYFHLPVQSGSDKVL 249
>gi|419720520|ref|ZP_14247747.1| ribosomal protein S12 methylthiotransferase RimO
[Lachnoanaerobaculum saburreum F0468]
gi|383303340|gb|EIC94798.1| ribosomal protein S12 methylthiotransferase RimO
[Lachnoanaerobaculum saburreum F0468]
Length = 440
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 139/272 (51%), Gaps = 21/272 (7%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLIAKC 121
M + GC N DSE M G ++ G+ TD EEAD+ +INTC ++S + +++ ++
Sbjct: 5 MVSLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEADVMIINTCGFIQSAKEESINAILEAS 64
Query: 122 KSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH-EVRL 173
K + K L+V GC+ Q +D +KE+ V +++G D++VE VEE L G +
Sbjct: 65 KLKEVGNLKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEEVLGGEIKNEF 124
Query: 174 LHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
L +LP++ K R+N + L I GC CTYC RG+ SY ++ L+ +
Sbjct: 125 LDLDRLPSI--SKKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSYPLDDLIVQA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + G+KE+ L +++T YG DI LP LL + +G +RI P I
Sbjct: 183 KDLATQGIKELILVAQETTLYGVDIYGKKTLPKLLKELA---KIEGIEWIRILYCYPEEI 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ L ++ C Y L +P+Q SD +L
Sbjct: 240 TDELIDVIASEDKVCKY--LDIPIQHASDNIL 269
>gi|448363530|ref|ZP_21552130.1| MiaB-like tRNA modifying protein [Natrialba asiatica DSM 12278]
gi|445646343|gb|ELY99332.1| MiaB-like tRNA modifying protein [Natrialba asiatica DSM 12278]
Length = 417
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 128/260 (49%), Gaps = 15/260 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHQVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
L + GC+ L + E + V + V E + E P
Sbjct: 65 SEETADLFITGCMA-----LAQGEEFAQADVDGQVLHWDAVPEAVTNGECPTTTPDAEPI 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE+
Sbjct: 120 LD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAKEL 172
Query: 242 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-R 300
++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+
Sbjct: 173 RITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADAFAE 230
Query: 301 HPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGSD VL
Sbjct: 231 YDELYDFLHAPVQSGSDDVL 250
>gi|290968596|ref|ZP_06560134.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera genomosp.
type_1 str. 28L]
gi|335049650|ref|ZP_08542637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
199-6]
gi|290781249|gb|EFD93839.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera genomosp.
type_1 str. 28L]
gi|333762385|gb|EGL39883.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
199-6]
Length = 442
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 139/281 (49%), Gaps = 24/281 (8%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+ G + Y+ T+GC N SDSE AGQL A GY LT+ + AD+ L+NTC V+ ++
Sbjct: 3 VLGNKFAYIATYGCQMNSSDSERYAGQLEALGYRLTEEMDVADVILLNTCCVRETAEGKT 62
Query: 115 DTLIAKCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETL 166
I + K K+ + V GC+ Q R + + +V G I ++ +++E
Sbjct: 63 LGKIGELKHYKERNPELVIAVTGCMAQEWQERLFERAPHIDLVIGTHNIHKLTALLQERQ 122
Query: 167 KGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
L LPA DLP R +KF +PI GC CTYC H RG S V
Sbjct: 123 GKSGHALAADMSLPAFHDLPTKRFHKFFAWVPIMNGCNKFCTYCIVPHVRGREVSRPVAE 182
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
+V V + DG KEV L ++ +YG D+ G + L+ A+ E P G +R +
Sbjct: 183 IVREVAQLGKDGYKEVTLLGQNVNSYGLDLRDGTDFGTLVEAL--ETVP-GVERIRYMTS 239
Query: 284 NP----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+P P +++ + + V+ H LH+P+QSGS+A+L
Sbjct: 240 HPKDMTPAMIDAIAAGSRVVHH------LHLPIQSGSNAML 274
>gi|448342799|ref|ZP_21531744.1| MiaB-like tRNA modifying enzyme [Natrinema gari JCM 14663]
gi|445624632|gb|ELY78008.1| MiaB-like tRNA modifying enzyme [Natrinema gari JCM 14663]
Length = 417
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 132/264 (50%), Gaps = 23/264 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
L + GC+ QG + D +++G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQGEAFDRADVDG-------QVLHWDEVPEAVTNG-ECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G L LL I DG +R+GM NP + +E+A
Sbjct: 170 KEIRITGQDTGVYGWDEGNRKLHRLLEEIC---EIDGDFRVRVGMANPKGVHGIREELAA 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVL 320
V + +Y FLH PVQSGSD VL
Sbjct: 227 VFAEYDELYDFLHAPVQSGSDDVL 250
>gi|373469230|ref|ZP_09560438.1| ribosomal protein S12 methylthiotransferase RimO [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
gi|371764909|gb|EHO53275.1| ribosomal protein S12 methylthiotransferase RimO [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
Length = 440
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLIAKC 121
M + GC N DSE M G ++ G+ TD EEA++ +INTC ++S + +++ ++
Sbjct: 5 MVSLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEAEVMIINTCGFIQSAKEESINAILEAA 64
Query: 122 KSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH-EVRL 173
+ + K L+V GC+ Q +D +KE+ V +++G D++VE VE+ L G +
Sbjct: 65 RLKEDGNLKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEDVLGGEIKNEF 124
Query: 174 LHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
L +LP++ K R+N + L I GC CTYC RG+ SY +E L+ +
Sbjct: 125 LDLDRLPSI--SKKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSYPLEDLIIQA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + + G+KE+ L +++T YG D+ LP LL + DG +RI P I
Sbjct: 183 KDLASQGIKELILVAQETTLYGVDLYGKKTLPKLLKELA---KIDGIEWIRILYCYPEEI 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ L ++ + + V +L +P+Q SD +L
Sbjct: 240 TDELIDV--IAKEDKVCKYLDIPIQHASDNIL 269
>gi|332799240|ref|YP_004460739.1| 30S ribosomal protein S12 methylthiotransferase RimO
[Tepidanaerobacter acetatoxydans Re1]
gi|438002369|ref|YP_007272112.1| Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase
[Tepidanaerobacter acetatoxydans Re1]
gi|332696975|gb|AEE91432.1| Ribosomal protein S12 methylthiotransferase rimO [Tepidanaerobacter
acetatoxydans Re1]
gi|432179163|emb|CCP26136.1| Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase
[Tepidanaerobacter acetatoxydans Re1]
Length = 441
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 145/283 (51%), Gaps = 23/283 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLIAKCKS 123
+ GC N DSEYM G L Y +T+N EA I +INTC +K Q ++DT++ +
Sbjct: 9 SLGCDKNLVDSEYMLGILKKHNYTITNNENEAQIIIINTCGFIKEAKQESIDTILEMAQL 68
Query: 124 AK----KPLVVAGCVPQGSR-----DLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
K + L+ GC+ Q + ++ EL+ V +G D++ EV+++ L +++ L
Sbjct: 69 KKLGKCRLLIATGCLAQRYKSELLTEIPELDAV--IGTGDFDKICEVIQQ-LDSNKINLT 125
Query: 175 HRKKLPALDL-PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ D+ +VR + + I GC C+YC RG S +E++ V+ +
Sbjct: 126 NNYSFIDYDVHSRVRIYPYTSFVKIAEGCDNYCSYCAIPFIRGSYRSRKIEAIKEEVKIL 185
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+A GVKE+ L ++DT YG DI +LP LL ++ DG ++RI P I +
Sbjct: 186 VAQGVKEINLVAQDTTNYGVDIYGRPSLPELLQELI---KIDGEYLIRILYAYPTNINKE 242
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVSL 334
L ++ +L + ++L +P+Q +D +L + + PT S S+
Sbjct: 243 LLDV--MLSSKKIANYLDIPLQHFNDRILRLMGR--PTNSQSI 281
>gi|302808877|ref|XP_002986132.1| hypothetical protein SELMODRAFT_446506 [Selaginella moellendorffii]
gi|300145991|gb|EFJ12663.1| hypothetical protein SELMODRAFT_446506 [Selaginella moellendorffii]
Length = 936
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 117/233 (50%), Gaps = 85/233 (36%)
Query: 88 ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGV 147
A++D+ + AD+WLINTCTVK+P+ M+TLI K K+A PLV
Sbjct: 2 AISDSPQRADLWLINTCTVKAPT---METLICKGKAASIPLV------------------ 40
Query: 148 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
+ ++ VE++ PINVGCLGACT
Sbjct: 41 ------RKNKFVEII----------------------------------PINVGCLGACT 60
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
YCKTKHARGHLGSYTV++LV R++TV+++ GRDIG N+P LL A+V
Sbjct: 61 YCKTKHARGHLGSYTVDTLVQRLKTVVSE---------------GRDIGANIPALLRALV 105
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
A LP + +N HL HPCVY FLHV VQSG D+VL
Sbjct: 106 AALP----HRQKYNASN-----LHLTASGGNGCHPCVYLFLHVLVQSGRDSVL 149
>gi|429191122|ref|YP_007176800.1| MiaB-like tRNA modifying enzyme [Natronobacterium gregoryi SP2]
gi|448326688|ref|ZP_21516035.1| MiaB-like tRNA modifying protein [Natronobacterium gregoryi SP2]
gi|429135340|gb|AFZ72351.1| MiaB-like tRNA modifying enzyme [Natronobacterium gregoryi SP2]
gi|445610493|gb|ELY64264.1| MiaB-like tRNA modifying protein [Natronobacterium gregoryi SP2]
Length = 417
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 130/264 (49%), Gaps = 23/264 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D++E AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDSAEAADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKK 178
L + GC+ QG KE + G V D V + V E
Sbjct: 65 ADETAALYITGCMALAQG----KEFAEADVDGEVLHWDEVPQAV----TNGECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD + ILPI GC+ C+YC TKHA G + S +++ V + R +I G
Sbjct: 117 EPVLD-------GVIGILPIARGCMSDCSYCITKHATGKIDSPSIDKNVAKARALIHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G L LL I A DG +R+GM NP + E+A
Sbjct: 170 KEIRITGQDTGVYGWDDGERKLHELLERICA---IDGEFRVRVGMANPKGVHGIRDELAA 226
Query: 298 VLR-HPCVYSFLHVPVQSGSDAVL 320
V + +Y FLH PVQSGSD VL
Sbjct: 227 VFAGNEKLYDFLHAPVQSGSDDVL 250
>gi|52080307|ref|YP_079098.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|319645912|ref|ZP_08000142.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
gi|404489194|ref|YP_006713300.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|423682247|ref|ZP_17657086.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis WX-02]
gi|81385531|sp|Q65JE5.1|MIAB_BACLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|52003518|gb|AAU23460.1| conserved hypothetical protein [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52348185|gb|AAU40819.1| tRNA methylthiotransferase YmcB [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317391662|gb|EFV72459.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
gi|383439021|gb|EID46796.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis WX-02]
Length = 509
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 141/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD++E+A++ L+NTC ++ +++ + I
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDSTEDANVILLNTCAIRENAENKVFGEIGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKDNPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRTGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS VL +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSDVLKL 338
>gi|448506321|ref|ZP_21614431.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 9100]
gi|448525058|ref|ZP_21619476.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 10118]
gi|445699971|gb|ELZ51989.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 9100]
gi|445700030|gb|ELZ52045.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 10118]
Length = 441
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 133/264 (50%), Gaps = 19/264 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D ++AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPKDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVL 320
V + +Y F+H PVQSGSD VL
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVL 250
>gi|448737807|ref|ZP_21719841.1| MiaB-like tRNA modifying enzyme [Halococcus thailandensis JCM
13552]
gi|445803263|gb|EMA53562.1| MiaB-like tRNA modifying enzyme [Halococcus thailandensis JCM
13552]
Length = 414
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 135/265 (50%), Gaps = 23/265 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++T+GC+ N+ +S + +L G+ D AD+ ++NTCTV +++ M
Sbjct: 3 SYHIETYGCTANRGESRAIERRLRDGGHHPVDGPANADVAILNTCTVVEKTETNMRRRAE 62
Query: 120 KCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ A +VV GC+ QG + +L+ ++ G ++ VV + E
Sbjct: 63 ELDEATADVVVTGCMALAQGEQ-FADLD-ATVCGWDEVPEVV-------RNGECPRPTPD 113
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TKHA G + S +E V + R ++ G
Sbjct: 114 AEPILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPPIEENVRKARALVHAG 166
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G L LL I A DG +R+GM NP + +E+A
Sbjct: 167 AKEIRVTGQDTGVYGWDTGERKLHELLERICA---IDGDFRVRVGMANPKGVHGIREELA 223
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVL 320
+V +Y+FLH PVQSGS+ VL
Sbjct: 224 DVFAEEEKLYNFLHAPVQSGSNDVL 248
>gi|448479235|ref|ZP_21604087.1| MiaB-like tRNA modifying enzyme [Halorubrum arcis JCM 13916]
gi|445822513|gb|EMA72277.1| MiaB-like tRNA modifying enzyme [Halorubrum arcis JCM 13916]
Length = 441
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 133/264 (50%), Gaps = 19/264 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D ++AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPKDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVL 320
V + +Y F+H PVQSGSD VL
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVL 250
>gi|350546944|ref|ZP_08916300.1| hypothetical protein GUU_03770 [Mycoplasma iowae 695]
gi|349503497|gb|EGZ31084.1| hypothetical protein GUU_03770 [Mycoplasma iowae 695]
Length = 483
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 134/273 (49%), Gaps = 16/273 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++KTFGC N DSE + G L GY TD+ +AD+ L+NTC V+ ++ + I
Sbjct: 48 FHIKTFGCQSNVRDSETLMGILEMIGYTHTDSINDADLVLLNTCAVREHAEQKVFADIGV 107
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--KG 168
KK + GC+ Q ++ LK + I G I RV+ ++E+ + K
Sbjct: 108 LDKIKKTNPNFIFGMCGCMAQEESIVNKILKSNSNIDFIFGTHNIHRVLNILEQVIFEKN 167
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP R + + + GC CTYC RG + S + E ++
Sbjct: 168 LIIEVWSKEGDIIENLPSFRNSNIKAFVNVMYGCDKFCTYCIVPFTRGKIRSRSKEDILD 227
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
V+++I +G KEV L ++ +YG D + L + ++ ++ G LR +NP
Sbjct: 228 EVKSLIKEGYKEVTLIGQNVNSYGIDFKNDKKYLFHDLLKDVAETGIKRLRFTTSNP--- 284
Query: 289 LEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVL 320
KEI +V++ HP + +H+P+QSG + +L
Sbjct: 285 WNFTKEIVDVMKSHPNIMPHIHLPIQSGDELIL 317
>gi|339444956|ref|YP_004710960.1| hypothetical protein EGYY_14080 [Eggerthella sp. YY7918]
gi|338904708|dbj|BAK44559.1| hypothetical protein EGYY_14080 [Eggerthella sp. YY7918]
Length = 453
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 133/280 (47%), Gaps = 18/280 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++TFGC N+ DSE +AG G D EEADI TC V+ + + + +A
Sbjct: 9 TFCIRTFGCQMNKHDSERIAGMFEGLGALQVDTIEEADIVAFMTCCVREAADTRLYGQVA 68
Query: 120 KCKSA---------KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ K+ + V GC+ Q G + KEL+ + +V G + + +V ++
Sbjct: 69 SLKNVPLRTDSPLRKRIVAVGGCIGQRDGEKLTKELDHLDVVFGTHNLGSLPHLVMAAIE 128
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
GH V +L +LP R + + LPI +GC C+YC + RG S +E
Sbjct: 129 EGGHHVEVLDAASSFPTELPTSREHDWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 188
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 189 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGAPRFAQVLDA-LDGTGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ + + LR + LH+PVQSGSDAVL+ +
Sbjct: 247 KDLTDEVIGKFATLR--SLMPALHLPVQSGSDAVLAAMNR 284
>gi|448303684|ref|ZP_21493633.1| MiaB-like tRNA modifying protein [Natronorubrum sulfidifaciens JCM
14089]
gi|445593469|gb|ELY47647.1| MiaB-like tRNA modifying protein [Natronorubrum sulfidifaciens JCM
14089]
Length = 417
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 130/263 (49%), Gaps = 21/263 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDDADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E I G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFAQADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPPIEENVAKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREELAAV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
H +Y FLH PVQSGS+ VL
Sbjct: 228 FAEHDELYDFLHAPVQSGSNDVL 250
>gi|225849364|ref|YP_002729528.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643388|gb|ACN98438.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 437
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 145/278 (52%), Gaps = 20/278 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PSQSAMDTL--I 118
Y++TFGC N +DSE MAG L GY + +EAD+ L+NTC+V+ P Q + L
Sbjct: 4 YIRTFGCQMNVNDSEKMAGILKTLGYEPAQDWKEADVILVNTCSVREKPDQKVLSALGEF 63
Query: 119 AKCKSAKKPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VR 172
K K K + V GC+ Q G L++ + +V G I + +++EE G++ V
Sbjct: 64 KKIKKDKPNAIIGVCGCLAQRAGYEILQKAPFIDMVFGTTNIHHLPQLLEEAKSGNKAVE 123
Query: 173 LLHR--KKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+L + LD P VR NK+ + + GC CTYC RG S + ++
Sbjct: 124 ILEEIDENENLLDQFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGKERSRRIGDILRE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
V+ ++ DGVKE+ L ++ AYG+D+G V LL A VA +P G +R +P +
Sbjct: 184 VQFLVEDGVKEIHLIGQNVTAYGKDLGDVKFWELLQA-VASVP--GVERIRFTTGHPRDL 240
Query: 289 LEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
E +K +A++ P V LH+P+Q+GSD VL +
Sbjct: 241 DEDTIKVMADL---PQVCEALHLPIQAGSDKVLQAMDR 275
>gi|448491553|ref|ZP_21608393.1| MiaB-like tRNA modifying enzyme [Halorubrum californiensis DSM
19288]
gi|445692553|gb|ELZ44724.1| MiaB-like tRNA modifying enzyme [Halorubrum californiensis DSM
19288]
Length = 444
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 131/263 (49%), Gaps = 17/263 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D ++AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPKDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ LVV GC+ ++ V +I EV L G E +
Sbjct: 63 ELSETTAELVVTGCMALAQGEMFAEADVD----AEILHWDEVPTYVLNG-ECPTVTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+V
Sbjct: 171 EIRVTGQDTGVYGWDNGDRKLPELLDRI---CDIDGDFRVRLGMANPGGIHGIHEELADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
+ +Y F+H PVQSGSD VL
Sbjct: 228 FAENEELYDFVHAPVQSGSDDVL 250
>gi|448435830|ref|ZP_21586898.1| MiaB-like tRNA modifying enzyme [Halorubrum tebenquichense DSM
14210]
gi|445683265|gb|ELZ35665.1| MiaB-like tRNA modifying enzyme [Halorubrum tebenquichense DSM
14210]
Length = 450
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 132/264 (50%), Gaps = 19/264 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDITAELVVTGCMA-----LAQGEQFAEADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S ++E V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSIEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I E+A+
Sbjct: 170 KELRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGDFRVRLGMANPGGIHGIHDELAD 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVL 320
V + +Y F+H PVQSGSD VL
Sbjct: 227 VFADNEELYDFIHAPVQSGSDDVL 250
>gi|288817802|ref|YP_003432149.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
gi|384128563|ref|YP_005511176.1| MiaB family RNA modification protein [Hydrogenobacter thermophilus
TK-6]
gi|288787201|dbj|BAI68948.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
gi|308751400|gb|ADO44883.1| RNA modification enzyme, MiaB family [Hydrogenobacter thermophilus
TK-6]
Length = 433
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 145/276 (52%), Gaps = 17/276 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+KTFGC N +DSE + G L GY + +EADI LINTCT++ + + + +
Sbjct: 4 YIKTFGCQMNFNDSERIKGMLQTLGYQEAKDWQEADIILINTCTIREKPDQKVFSHLGEY 63
Query: 122 KSAK----KPLV-VAGCVPQ--GSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHE-VR 172
K K K L+ V GC+ Q G +++ V I+ + ++ E++++ G++ V
Sbjct: 64 KKLKEQNPKALIGVCGCLAQRMGFELIQKSPVVDIMFSSFNMHQLPELIQQAQAGYKAVA 123
Query: 173 LLHR---KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+L + D P VR N + + + GC CTYC RG S ++ES++
Sbjct: 124 ILENPPDDEDKLWDYPTVRDNPYCAYVTVMKGCDKNCTYCVVPKTRGRQRSRSLESILKE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
VR +++DGVKEV L ++ A+G+DIG + LL VAE+ DG +R +P +
Sbjct: 184 VRDLVSDGVKEVHLLGQNVTAWGKDIGKHFSELLYR-VAEI--DGVERIRFTTGHPKDLD 240
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
E + + ++ C + +H+P Q+GSD +L + +
Sbjct: 241 EGIAKAMGEIKKVCEH--IHLPFQAGSDRILKLMDR 274
>gi|392960658|ref|ZP_10326124.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans DSM 17108]
gi|421054584|ref|ZP_15517551.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelosinus fermentans B4]
gi|421057354|ref|ZP_15520198.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans B3]
gi|421065507|ref|ZP_15527248.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A12]
gi|421071447|ref|ZP_15532565.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A11]
gi|392440686|gb|EIW18355.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelosinus fermentans B4]
gi|392447074|gb|EIW24337.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A11]
gi|392454794|gb|EIW31613.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans DSM 17108]
gi|392458761|gb|EIW35255.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A12]
gi|392463262|gb|EIW39232.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans B3]
Length = 458
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 148/303 (48%), Gaps = 30/303 (9%)
Query: 45 LSKTGSLSPKIPGTE---------TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
+SK + +IP E T Y T+GC NQ DSE +AGQL + GY T++ E+
Sbjct: 1 MSKPDQYNVEIPSNEVKDSNIKYFTTY--TYGCQMNQHDSERLAGQLKSIGYEYTESLED 58
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVS 148
A LINTC V+ ++ + I + K+ K + +AGC+ Q ++ K+ +
Sbjct: 59 ASFILINTCCVRESAEKKIYGKIGELKNLKVSNPNLIIAIAGCMAQKDKEKLFKKAPHID 118
Query: 149 -IVGVQQIDRVVEVVE--ETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGA 205
I+G + ++VE+V+ E K + + + + A D+P +RR K +PI GC
Sbjct: 119 LIIGTHNVHQLVEIVKEFEESKDRVLAVWDQAERLAPDVPTIRRGKISAWVPIMYGCNNF 178
Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILL 263
CTYC + RG S + ++ + + DG KE+ L ++ +YG D + LL
Sbjct: 179 CTYCIVPYVRGRERSRPLHDIIEEIHQLGLDGFKEITLLGQNVNSYGNDTKEYGDFADLL 238
Query: 264 NAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
A+ T+ R+ MT+ P + K I +L + H+PVQSGSDA+L +
Sbjct: 239 KAV-----DQVETIERVRYMTSHPRDIND-KVINTILNSKKICDHFHLPVQSGSDAILKM 292
Query: 323 SQK 325
+
Sbjct: 293 MNR 295
>gi|402312007|ref|ZP_10830937.1| ribosomal protein S12 methylthiotransferase RimO [Lachnospiraceae
bacterium ICM7]
gi|400370668|gb|EJP23650.1| ribosomal protein S12 methylthiotransferase RimO [Lachnospiraceae
bacterium ICM7]
Length = 440
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 139/270 (51%), Gaps = 17/270 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLIA-- 119
M + GC N DSE M G ++ G+ TD EEA+I +INTC ++S + +++ ++
Sbjct: 5 MVSLGCDKNTVDSEMMLGLMNDKGFEYTDIDEEAEIMIINTCGFIQSAKEESINAILEAA 64
Query: 120 --KCKSAKKPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH-EVRL 173
K + A K L+V GC+ Q +D +KE+ V +++G D++VE VE+ L G +
Sbjct: 65 RLKEEGALKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEDVLGGEIKNEF 124
Query: 174 LHRKKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L +LP++ + + L I GC CTYC RG+ SY ++ L+ + +
Sbjct: 125 LDLDRLPSISNKRTNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSYPMDDLIAQAKD 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ A G+KE+ L +++T YG D+ +LP LL + +G +RI P I +
Sbjct: 185 LAAQGIKELILVAQETTLYGVDLYGEKSLPKLLKELA---KVEGIEWIRILYCYPEEITD 241
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L E+ C Y L +P+Q SD +L
Sbjct: 242 ELIEVIANEEKVCKY--LDIPIQHASDNIL 269
>gi|448306889|ref|ZP_21496792.1| MiaB-like tRNA modifying protein [Natronorubrum bangense JCM 10635]
gi|445597400|gb|ELY51476.1| MiaB-like tRNA modifying protein [Natronorubrum bangense JCM 10635]
Length = 417
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 130/262 (49%), Gaps = 19/262 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGLDDADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E I G Q+ EV E G E
Sbjct: 65 SEETADLFITGCMALAQG----EEFAQADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSIEENVAKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L + E+ +G +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEHICEI--EGDFRVRVGMANPKGVHGIREELAAVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVL 320
H +Y FLH PVQSGS+ VL
Sbjct: 229 AEHDELYDFLHAPVQSGSNDVL 250
>gi|421860660|ref|ZP_16292766.1| 2-methylthioadenine synthetase [Paenibacillus popilliae ATCC 14706]
gi|410829846|dbj|GAC43203.1| 2-methylthioadenine synthetase [Paenibacillus popilliae ATCC 14706]
Length = 442
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 148/279 (53%), Gaps = 25/279 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDT 116
TE I + T GC N DSE M+G + +G+ L +N+E+A + ++NTC + + + +++T
Sbjct: 2 TEQIKIVTLGCDKNLVDSEMMSGIMDQYGHELVENAEDATVIIVNTCGFIDAAKEESVNT 61
Query: 117 LIA----KCKSAKKPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
++ K + K L+V+GC+ Q ++ L+E+ + IVG ++ E+V E L+G
Sbjct: 62 ILELADLKETARLKALIVSGCLTQRYKEQLLEEMPEIDGIVGTGDFHKINEIVAEALQGK 121
Query: 170 E-VR-----LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+ VR + + LP KV ++ + I GC CT+C RG S ++
Sbjct: 122 KPVRVGNPVFNYEQILPR----KVATPRYTAYVKIAEGCDNNCTFCSIPMMRGKFRSRSM 177
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG 281
ES++ V+ + GVKE+ L ++D+ YG D+ G LP L+N V+E+P G +R+
Sbjct: 178 ESILTEVKQLAEQGVKEISLIAQDSTNYGIDLYDGFKLPALMNK-VSEVP--GVEWVRLH 234
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P F E L I + +P + ++ +P+Q D +L
Sbjct: 235 YAYPGFFTEEL--IDTIATNPKICKYVDMPLQHSEDTIL 271
>gi|448502690|ref|ZP_21612711.1| MiaB-like tRNA modifying enzyme [Halorubrum coriense DSM 10284]
gi|445693887|gb|ELZ46027.1| MiaB-like tRNA modifying enzyme [Halorubrum coriense DSM 10284]
Length = 440
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 132/274 (48%), Gaps = 37/274 (13%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ LVV GC+ L + E + V + +LH ++
Sbjct: 63 ELSETTAELVVTGCMA-----LAQGEMFADADV-----------------DAEILHWDEV 100
Query: 180 PAL----DLPKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
PA + P V + V +LPI GC+ C+YC TK A G + S V V +
Sbjct: 101 PAYVLNGECPTVTPDAEPVLDGVVGLLPIARGCMSNCSYCITKFATGRVDSPPVAENVEK 160
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R ++ G KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I
Sbjct: 161 ARALVHAGAKEIRVTGQDTGVYGWDDGDRKLPELLDRIC---DIDGEFRVRLGMANPGGI 217
Query: 289 LEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLS 321
+E+AEV + +Y F+H PVQSGSD VL
Sbjct: 218 HGIHEELAEVFAENEELYDFIHAPVQSGSDDVLE 251
>gi|344243123|gb|EGV99226.1| CDK5 regulatory subunit-associated protein 1-like 1 [Cricetulus
griseus]
Length = 254
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 84/124 (67%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 53 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 112
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+G +++ + + V K HE L
Sbjct: 113 RNSIRKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGFRELLKEGKGVPRGNKEHEEEKL 172
Query: 175 HRKK 178
K+
Sbjct: 173 QEKE 176
>gi|365154971|ref|ZP_09351367.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
smithii 7_3_47FAA]
gi|363628896|gb|EHL79597.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
smithii 7_3_47FAA]
Length = 514
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 139/274 (50%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG L GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGILMQLGYEPTDQPEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K KP L V GC+ Q ++ LK+ + V +V G I R+ ++ E E
Sbjct: 131 LKPLKMEKPDLLLGVCGCMSQEESVVNKLLKQYQYVDMVFGTHNIHRLPHILNEAYMAKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDVVENLPKVRQGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ +L +R ++P
Sbjct: 251 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDMEYGLGDLMDDLRKIDIPRIRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 310 DDHLIEV--LAKKGNLMEHIHLPVQSGSSEILKI 341
>gi|419718717|ref|ZP_14246023.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum F0468]
gi|383305057|gb|EIC96436.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum F0468]
Length = 475
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 151/304 (49%), Gaps = 23/304 (7%)
Query: 43 NHLSKTGSLSP-KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
N + TG++ K P + + TFGC N DSE ++G LS GY + E+AD+ L
Sbjct: 21 NDIIHTGAIDRGKYPTYKVV---TFGCQMNARDSEKLSGILSGIGYTEAKSEEDADLVLF 77
Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVG 151
NTCTV+ + + + + K +K+ + + GC+ Q + ++++++ + G
Sbjct: 78 NTCTVRENANDRLYGRVGQLKKSKEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFG 137
Query: 152 VQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209
I ++ E++ + LK + V ++ + LP R+ F + I GC C+YC
Sbjct: 138 THNIYKLAEILFDHLKTKKQIVDVMESADMIVEKLPNKRQYAFKSGVNITFGCNNFCSYC 197
Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIV 267
+ RG S E + ++ ++ADGVKEV L ++ +YG+ D +N +LL+ +
Sbjct: 198 IVPYVRGKERSRKPEEITDEIKGLVADGVKEVMLLGQNVNSYGKGLDEKINFAMLLDEVA 257
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIV 327
DG LR +P + + + E+ + + C + LH+P+QSGS A+L ++
Sbjct: 258 ---KIDGLERLRFMTPHPKDLSDEVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVY 312
Query: 328 PTKS 331
+S
Sbjct: 313 TKES 316
>gi|337749973|ref|YP_004644135.1| MiaB-like tRNA modifying protein YliG [Paenibacillus mucilaginosus
KNP414]
gi|386725602|ref|YP_006191928.1| MiaB-like tRNA modifying protein YliG [Paenibacillus mucilaginosus
K02]
gi|336301162|gb|AEI44265.1| MiaB-like tRNA modifying enzyme YliG [Paenibacillus mucilaginosus
KNP414]
gi|384092727|gb|AFH64163.1| MiaB-like tRNA modifying protein YliG [Paenibacillus mucilaginosus
K02]
Length = 442
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 151/279 (54%), Gaps = 25/279 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDT 116
TE + + T GC N DSE M+G + GY+L EEA I ++NTC + + + +++T
Sbjct: 2 TEKVKVVTLGCEKNLVDSEIMSGLVHERGYSLVSEKEEATIIIVNTCGFIDAAKEESVNT 61
Query: 117 LI--AKCKSAK--KPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
++ A+ K K L+V+GC+ Q ++ LKE+ + IVG + ++++E L+G
Sbjct: 62 ILDMAELKQTANLKALIVSGCLTQRYKEELLKEMPEIDGIVGTGDFHNINQIIDEALQGS 121
Query: 170 EVRLL------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+ + + +KLP ++ ++ + I GC ACT+C RG S ++
Sbjct: 122 KPVYVGNPVFNYEQKLPR----RLTTPRYTAYVKIAEGCDNACTFCSIPIMRGKFRSRSM 177
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG 281
ES++ V+ + A GVKE+ L ++D+ YG D+ G LP L+N V+E+P G +R+
Sbjct: 178 ESVLEEVQQLAAQGVKEISLIAQDSTNYGTDLYDGFKLPELMNR-VSEVP--GIEWVRLH 234
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P F + L ++ + +P + ++ +P+Q SD++L
Sbjct: 235 YAYPGFFTDELIDV--IADNPKICKYIDMPLQHSSDSIL 271
>gi|448374494|ref|ZP_21558353.1| MiaB-like tRNA modifying enzyme [Halovivax asiaticus JCM 14624]
gi|445659933|gb|ELZ12733.1| MiaB-like tRNA modifying enzyme [Halovivax asiaticus JCM 14624]
Length = 417
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 128/261 (49%), Gaps = 17/261 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRQIERRLRDAGHHRVDGVDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
L V GC+ L + E GV + V E + E P
Sbjct: 65 ADETADLYVTGCMA-----LAQGEAFVNAGVDADVLHWDEVPEAVTNGECPTTTPDAEPI 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE+
Sbjct: 120 LD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSIEENVEKARALIHAGAKEL 172
Query: 242 WLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 299
++ +DTG YG D G L LL+ I +G +R+GM NP + +E+A V
Sbjct: 173 RITGQDTGVYGWDDGERKLHRLLDRIC---DIEGDFRVRVGMANPKGVHGIREELASVFA 229
Query: 300 RHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGSD VL
Sbjct: 230 DNEELYDFLHAPVQSGSDDVL 250
>gi|409723333|ref|ZP_11270609.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
gi|448722015|ref|ZP_21704556.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
gi|445790418|gb|EMA41080.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
Length = 424
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 135/270 (50%), Gaps = 23/270 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++T+GC+ N+ +S + +L G+ + + AD+ ++NTCTV +++ M
Sbjct: 3 SYHIETYGCTANRGESREIERRLRDGGHHPAEGPKAADVAILNTCTVVEKTETNMLRRAR 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE--ETLKGHEVRLLHRK 177
+ + LVV GC+ + + G ++ VV E T G E
Sbjct: 63 ELEEETADLVVTGCMALAQGEQFADVDARVCGWDEVPEVVRNGECPTTAPGTE------- 115
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TKHA G + S +E V + R ++ G
Sbjct: 116 --PILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPPIEENVEKARALVHAG 166
Query: 238 VKEVWLSSEDTGAYGRDIGVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G L LL+ I +G +R+GM NP + +E+A
Sbjct: 167 AKEIRVTGQDTGVYGWDEGERKLHRLLDRI---CDIEGDFRVRVGMANPKGVHGIREELA 223
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSVSQK 325
EV + +Y FLH+PVQSGSD VL ++
Sbjct: 224 EVFAENEKLYDFLHIPVQSGSDDVLGAMRR 253
>gi|392960702|ref|ZP_10326167.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans DSM 17108]
gi|421054540|ref|ZP_15517508.1| MiaB-like tRNA modifying enzyme YliG [Pelosinus fermentans B4]
gi|421057793|ref|ZP_15520559.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans B3]
gi|421065829|ref|ZP_15527521.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans A12]
gi|421071402|ref|ZP_15532522.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans A11]
gi|392440898|gb|EIW18558.1| MiaB-like tRNA modifying enzyme YliG [Pelosinus fermentans B4]
gi|392447318|gb|EIW24572.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans A11]
gi|392454599|gb|EIW31421.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans DSM 17108]
gi|392458033|gb|EIW34624.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans A12]
gi|392462134|gb|EIW38250.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans B3]
Length = 444
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 135/267 (50%), Gaps = 14/267 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
+ GC+ N D+E M G L+ +TDN EADI +INTC+ + S + ++ T++
Sbjct: 8 SLGCAKNLVDTEVMLGLLATNDIKITDNPHEADILIINTCSFIDSAKEESISTILQMADY 67
Query: 124 AK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLL-- 174
K K L+VAGC+ Q + L EL V +I+G R++E + +TL H+ LL
Sbjct: 68 KKHGNCKCLIVAGCLGQRYQQELLDELPEVDAIIGTGAWHRIIEAINDTLVDHKRVLLVG 127
Query: 175 HRKKLPALDLPKVRRNKFVE-ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L +P++ F + I GC C+YC RG S T+ES++ V+ +
Sbjct: 128 ETNTLYDETMPRINTTPFYSAYVKIAEGCSNCCSYCIIPKVRGSFRSRTMESIIAEVKNL 187
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+A GVKE+ L ++DT +YGRD+ + P L + + DG +R+ P + L
Sbjct: 188 VATGVKEINLIAQDTTSYGRDL-YDSPKLTTLLKELVKIDGLMWVRLLYCYPKYFSNELI 246
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+ C Y + +P+Q +D +L
Sbjct: 247 ELIATESKICKY--IDLPLQHANDDIL 271
>gi|257791365|ref|YP_003181971.1| MiaB family RNA modification protein [Eggerthella lenta DSM 2243]
gi|257475262|gb|ACV55582.1| RNA modification enzyme, MiaB family [Eggerthella lenta DSM 2243]
Length = 459
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 137/280 (48%), Gaps = 18/280 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++TFGC N+ DSE +AG L G D E+AD+ TC V+ + + + +A
Sbjct: 9 TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADVVAFMTCCVREAADTRLYGQVA 68
Query: 120 KCKS---------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ +K+ + V GC+ Q G + + EL+ + +V G + + ++E L+
Sbjct: 69 SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 128
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
H+V +L +LP R +++ LPI +GC C+YC + RG S +E
Sbjct: 129 EGSHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 188
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 189 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ + + LR + LH+PVQSGSDAVL+ +
Sbjct: 247 KDLNDEVVGRFATLR--SLMPALHLPVQSGSDAVLAAMNR 284
>gi|390934941|ref|YP_006392446.1| Ribosomal protein S12 methylthiotransferase rimO
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570442|gb|AFK86847.1| Ribosomal protein S12 methylthiotransferase rimO
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 437
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 143/282 (50%), Gaps = 20/282 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLIAKCKS 123
+ GC+ N DSE M G + G+ + +N +AD+ +INTC ++S + ++D ++ K
Sbjct: 8 SLGCAKNTVDSEKMLGIIKEKGFNIVNNENDADVLIINTCGFIESAKRESIDYILEMSKL 67
Query: 124 AKK---PLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLL--- 174
+K L+ +GC+ + +D LK L E +++G ++ +V+E+TL G R+L
Sbjct: 68 KRKRLKSLIASGCLSERYKDELLKSLPELDAVIGTGDFLKIADVIEDTLNGK--RILEYG 125
Query: 175 HRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H +L D P++ K L I+ GC C++C RGH S +E L+ + +
Sbjct: 126 HANELDDKDSPRILSTPKHYAYLKISEGCNNKCSFCIIPKLRGHYRSIKMEDLLNEAKML 185
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+ +GVKE+ L ++DT YG DI LP LL + DG +RI P I E
Sbjct: 186 VENGVKELILIAQDTTKYGIDIYNKYMLPTLLRKLSH---IDGIKWIRILYAYPDSITEE 242
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVS 333
L I E+ + V ++ +P+Q +D VL ++ K +
Sbjct: 243 L--IDEIKTNEKVLKYIDIPLQHSNDEVLKRMKRNTTRKKIE 282
>gi|387926953|ref|ZP_10129632.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus PB1]
gi|387589097|gb|EIJ81417.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus PB1]
Length = 514
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 137/274 (50%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMGLGYEPTDKPEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ K KP L V GC+ Q ++ LK+ + V I G I R+ ++ E E
Sbjct: 131 LKALKMEKPDLLLGVCGCMSQEELVVNKILKQYQYVDMIFGTHNIHRLPNILHEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDIIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 251 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYRLGDLMEEISKIDIPRIRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS VL +
Sbjct: 310 DDHLIEV--LAKGGNLMPHIHLPVQSGSTDVLKI 341
>gi|433637940|ref|YP_007283700.1| MiaB-like tRNA modifying enzyme [Halovivax ruber XH-70]
gi|433289744|gb|AGB15567.1| MiaB-like tRNA modifying enzyme [Halovivax ruber XH-70]
Length = 449
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 131/271 (48%), Gaps = 18/271 (6%)
Query: 53 PKIPGTETIY-MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
P+ P Y ++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++
Sbjct: 27 PQYPTNMARYHIETYGCTSNRGESRQIERRLRDAGHHRVDGVDEADVAILNTCTVVEKTE 86
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
M + L V GC+ L + E GV + V E + E
Sbjct: 87 RNMLRRAEELADETADLYVTGCMA-----LAQGEEFVNAGVDADVLHWDEVPEAVTNGEC 141
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
P LD V ILPI GC+ C+YC TKHA G + S ++E V + R
Sbjct: 142 PTTTPDAEPILD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSIEENVEKAR 194
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G KE+ ++ +DTG YG D G L LL I A +G +RIGM NP +
Sbjct: 195 ALVHAGAKELRITGQDTGVYGWDDGERKLHRLLERICA---IEGDFRVRIGMANPKGVHG 251
Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVL 320
+++A V + +Y FLH PVQSGSD VL
Sbjct: 252 IREKLASVFADNEELYDFLHAPVQSGSDDVL 282
>gi|452974392|gb|EME74212.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
sonorensis L12]
Length = 509
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 140/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD++E+A++ L+NTC ++ +++ + I
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDSTEDANVILLNTCAIRENAENKVFGEIGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKMNNPDVILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRHGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELHKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS VL +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSEVLKL 338
>gi|392354304|ref|XP_003751735.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Rattus norvegicus]
Length = 423
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 74/85 (87%), Gaps = 2/85 (2%)
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+
Sbjct: 61 EGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEM 118
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVL 320
A++L HP VY+FLH+PVQS SD+VL
Sbjct: 119 AKILNHPRVYAFLHIPVQSASDSVL 143
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 54/67 (80%), Gaps = 2/67 (2%)
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+V GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 2 SVRQQGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEH 59
Query: 292 LKEIAEV 298
L+ + E+
Sbjct: 60 LEGVCEI 66
>gi|86609143|ref|YP_477905.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. JA-2-3B'a(2-13)]
gi|123502140|sp|Q2JKY0.1|MIAB_SYNJB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|86557685|gb|ABD02642.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 444
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 140/273 (51%), Gaps = 19/273 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL-- 117
T Y TFGC N++D+E MAG L + GY T++ +AD+ L NTCT++ ++ + +
Sbjct: 5 TYYTITFGCQMNRADTERMAGILESLGYVATEDELQADLVLYNTCTIRDNAEQKVYSYLG 64
Query: 118 IAKCKSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
I + K P L+VAGCV Q G + L+ + + +V G Q ++R+ +++ + G++V
Sbjct: 65 IQAQRKRKNPAIKLIVAGCVAQQEGEKLLRRVPELDLVMGPQYVNRLGDLLAQVEAGNQV 124
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
++P D+ K RR+ V INV GC CTYC RG S +++
Sbjct: 125 VATDPVEIPE-DITKPRRDSQVTAW-INVIYGCNERCTYCIVPRVRGQEQSRQPQAIRAE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+ V G +EV L ++ AYGRD+ NL LL + + +G +R ++P +
Sbjct: 183 IEDVARAGYREVTLLGQNIDAYGRDLDPKTNLASLLRFVHS---VEGIERIRFATSHPRY 239
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E L I P V H+P Q+GS+ VL
Sbjct: 240 FTEEL--ITTCAELPKVCEHFHIPFQAGSNEVL 270
>gi|257063789|ref|YP_003143461.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Slackia heliotrinireducens DSM 20476]
gi|256791442|gb|ACV22112.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Slackia heliotrinireducens DSM 20476]
Length = 451
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 138/275 (50%), Gaps = 18/275 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ Y+ T+GC N+ DSE + G L A G TD E+++I + TC V+ + + +
Sbjct: 9 SFYVFTYGCQMNEHDSERIVGMLEACGAHRTDVFEDSEIVIFMTCCVREAADVRLRGQVN 68
Query: 120 KCKSA---------KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ K+ + + GC+ Q G + + ++ V +V G Q I+R+ ++ L
Sbjct: 69 SIKNVPLPRTSELKKRVVCIGGCIGQRDGQQLIDDMHHVDVVFGTQNIERLPYLINGVLS 128
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
GH + + DLP R + + LPI VGC CTYC + RG S +ES
Sbjct: 129 RGGHIAEVQEESDTFSTDLPSKREHDWAAWLPITVGCNNFCTYCIVPYVRGRERSRAIES 188
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V + ++A+GV+E+ L ++ +YGRD+ P + ++ + G LR ++P
Sbjct: 189 VVADAQALVAEGVQEITLLGQNVNSYGRDL-YGEPRFAD-VLKGVAATGVPRLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ + + E L + + LH+PVQSGSDA+L
Sbjct: 247 KDLTDEVIEAFGTLGN--LMPALHLPVQSGSDAIL 279
>gi|289549019|ref|YP_003474007.1| MiaB family RNA modification protein [Thermocrinis albus DSM 14484]
gi|289182636|gb|ADC89880.1| RNA modification enzyme, MiaB family [Thermocrinis albus DSM 14484]
Length = 437
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 144/278 (51%), Gaps = 21/278 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+KTFGC N +DSE + G L GY D EEAD+ LINTCT++ + + + +
Sbjct: 4 YIKTFGCQMNFNDSERIKGILHHMGYKPADTPEEADLILINTCTIREKPDQKVYSHLGEY 63
Query: 122 KS--AKKPLV---VAGCVPQGSRDLKELEGVSIVGVQ----QIDRVVEVVEETLKGHE-V 171
K K+P V V GC+ Q + +E +V + I + E++++ G+ +
Sbjct: 64 KKIKEKRPEVIIGVCGCLAQ-RMGWQLVEKAPVVDLMFSSFNIHHLPELIQQAQAGYRAI 122
Query: 172 RLLHR---KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+L + + VR N + + + GC CTYC RG S ++ES++
Sbjct: 123 AILEEPPEDEDRMWEFKTVRDNAYCAYVTVMKGCDKHCTYCVVPKTRGRQRSRSLESILE 182
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR ++ADGVKE+ L ++ A+G+DI ++ LL VAE+P G +R +P +
Sbjct: 183 EVRWLVADGVKEIHLLGQNVTAWGQDINIHFSELLYR-VAEIP--GVERIRFTTGHPSDM 239
Query: 289 LEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
E + K + ++ P + LH+PVQSGS+ +L + ++
Sbjct: 240 DERIAKAMGDI---PQICEHLHLPVQSGSNRILKLMER 274
>gi|448298920|ref|ZP_21488934.1| MiaB-like tRNA modifying protein [Natronorubrum tibetense GA33]
gi|445588839|gb|ELY43079.1| MiaB-like tRNA modifying protein [Natronorubrum tibetense GA33]
Length = 417
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 130/262 (49%), Gaps = 19/262 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ + +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVEGVDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFSKADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIESPPIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L + EL +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEQICEL--EGEFRVRVGMANPKGVHGIREELADVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGSD VL
Sbjct: 229 AEYDELYDFLHAPVQSGSDDVL 250
>gi|70726621|ref|YP_253535.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
haemolyticus JCSC1435]
gi|123734986|sp|Q4L5Z6.1|MIAB_STAHJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|68447345|dbj|BAE04929.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 514
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 138/275 (50%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY T++ EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALGYTATEDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPEALIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + DG KE+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 EEVRGLARDGYKEITLLGQNVNSYGKDIK-DLEYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++AVL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKI 340
>gi|331001788|ref|ZP_08325310.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral
taxon 107 str. F0167]
gi|330412762|gb|EGG92145.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral
taxon 107 str. F0167]
Length = 475
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 139/275 (50%), Gaps = 17/275 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N DSE ++G LS GY +N E+AD+ L NTCTV+ + + + + K +
Sbjct: 41 TFGCQMNARDSEKLSGILSGIGYTEAENEEDADLVLFNTCTVRENANDRLYGRVGQLKKS 100
Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
K+ + + GC+ Q + ++++++ + G I ++ E++ + T K +
Sbjct: 101 KEKNHDMIVGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFDHLTTKKQIIN 160
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ + LP R+ F + I GC C+YC + RG S E ++ ++T
Sbjct: 161 VMESADMIVEKLPNKRQYAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDEIKT 220
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEH 291
++ADGVKE+ L ++ +YGR G+ I ++ + +G LR +P + +
Sbjct: 221 LVADGVKEIMLLGQNVNSYGR--GLEEEISFAGLLERIAEIEGLERLRFMTPHPKDLSDE 278
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKI 326
+ E+ + + C + LH+P+QSGS A+L ++
Sbjct: 279 VIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRV 311
>gi|327310209|ref|YP_004337106.1| MiaB family RNA modification protein [Thermoproteus uzoniensis
768-20]
gi|326946688|gb|AEA11794.1| RNA modification enzyme, MiaB family [Thermoproteus uzoniensis
768-20]
Length = 416
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 140/269 (52%), Gaps = 32/269 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC ++D++ + L G A+ ++ +AD+ L+ TC V+ + + +
Sbjct: 3 IYVETYGCWLAKADAQIL---LQRLGGAVAESPRDADLVLVYTCAVREDGEVRQLRRLGQ 59
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE-ETLKGHEVRLLHRKKL 179
S K LVVAGC+ + ++Q+ + E++ E ++G E R + L
Sbjct: 60 LASESKRLVVAGCLAKAR----------PYTIRQVAKNAELLYPEQVEGGEGRSMS--VL 107
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIAD 236
P D + +P+ VGCLG CT+C TK+ RG G S + +V V+ +A
Sbjct: 108 PEPD------GGLIYTVPLQVGCLGNCTFCITKYTRGGAGYVKSAPPDLVVEYVKKAVAK 161
Query: 237 GVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
G KE++L+ +D YG D G NLP LL I++++ +G +RIGM+ P +
Sbjct: 162 GAKEIYLTGQDVITYGFDARWRRGWNLPDLLEKILSQV--EGDYRIRIGMSEPWVFGKFA 219
Query: 293 KEIAEVL-RHPCVYSFLHVPVQSGSDAVL 320
I +++ R VY + H+PVQSGSD VL
Sbjct: 220 DAILDIVKRDERVYRYFHLPVQSGSDEVL 248
>gi|418324135|ref|ZP_12935386.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
pettenkoferi VCU012]
gi|365227632|gb|EHM68824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
pettenkoferi VCU012]
Length = 529
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 138/275 (50%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG LSA GY T++ AD+ LINTC ++ +++ + + I
Sbjct: 84 TFMIKTYGCQMNAHDTEVMAGILSALGYQPTEDINTADVILINTCAIRENAENKVFSEIG 143
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K K+ L V GC+ Q ++ LK + V I G I R+ E++EE K
Sbjct: 144 NLKHLKRERPDVLLGVCGCMSQEESVVNKILKSFQNVDMIFGTHNIHRLPEILEEAYLSK 203
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 204 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRKPEDII 263
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +EV L ++ +YG+DI L L ++A++ +R ++P
Sbjct: 264 QEVRELAREGYQEVTLLGQNVNSYGKDID-GLDYGLGDLLADISKIDIPRVRFTTSHPWD 322
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++AVL +
Sbjct: 323 FTDRMIEV--IAQGGNIVPHIHLPVQSGNNAVLKI 355
>gi|448394368|ref|ZP_21568173.1| MiaB-like tRNA modifying enzyme [Haloterrigena salina JCM 13891]
gi|445662410|gb|ELZ15178.1| MiaB-like tRNA modifying enzyme [Haloterrigena salina JCM 13891]
Length = 417
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 131/262 (50%), Gaps = 19/262 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D ++EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGADEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 SEETADLFITGCMALAQG----EEFRAADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPPIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L + + E+ +G +R+GM NP + +E+AEV
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLHRLLSEICEI--EGDFRVRVGMANPKGVHGIREELAEVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGS+ VL
Sbjct: 229 AENEELYDFLHAPVQSGSNDVL 250
>gi|323141892|ref|ZP_08076753.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413639|gb|EFY04497.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium
succinatutens YIT 12067]
Length = 437
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 138/290 (47%), Gaps = 24/290 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I T GC NQ+D+ M G A GY + E AD++L+NTC V + Q +I +
Sbjct: 4 IAFYTLGCKVNQADTASMEGIFRASGYEVVPFGEPADVYLVNTCVVTNTGQRKSRQIINR 63
Query: 121 CKSAKKPL---VVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLH 175
PL VV GC PQ + +++ +EGV I+G Q+ R+VE+VEE L+ +L
Sbjct: 64 A-VRHNPLSLVVVTGCYPQTAPEEVRAIEGVDVIIGNQERGRIVELVEEALEHKRTEILD 122
Query: 176 RKKLPALDLP------KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ +D +K L I GC CTYC ARG L S +++S+
Sbjct: 123 NVQQMTVDTKFEELGVGTETDKTRAFLKIQEGCNQYCTYCIIPFARGPLRSRSLDSIREE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLP--ILLNAIVAELPPDGSTMLRIGMTN--- 284
V ++A G KEV L G YG+++ L +A+ A L +G +R+G
Sbjct: 183 VGKLVAAGYKEVVLIGIHLGCYGKELAKEGKHVTLYDAVKAALSVEGVQRVRLGSLESVE 242
Query: 285 -PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVS 333
P +L+ + E + RH LH+P+QSG D +L + TK +
Sbjct: 243 VEPRLLQLMAEEPRLQRH------LHLPLQSGCDKILRAMHRPYDTKRFT 286
>gi|289582599|ref|YP_003481065.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
gi|448281973|ref|ZP_21473266.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
gi|289532152|gb|ADD06503.1| MiaB-like tRNA modifying enzyme [Natrialba magadii ATCC 43099]
gi|445577602|gb|ELY32035.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
Length = 417
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 132/263 (50%), Gaps = 21/263 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 STETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEEICA---IEGDFRVRVGMANPKGVHGIREELADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGSD VL
Sbjct: 228 FAANDELYDFLHAPVQSGSDDVL 250
>gi|305663521|ref|YP_003859809.1| MiaB family RNA modification protein [Ignisphaera aggregans DSM
17230]
gi|304378090|gb|ADM27929.1| RNA modification enzyme, MiaB family [Ignisphaera aggregans DSM
17230]
Length = 426
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 140/268 (52%), Gaps = 9/268 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC+ N++D+ + L + D+ EAD+ ++NTC V+ ++ M + +
Sbjct: 3 IYIETYGCALNRADTNIIKTLLIEKKIEIVDSPREADVIILNTCVVRYDTEVRMLKRLEE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K ++V+GC+ +R L ++ V+ V + + + E + + + +
Sbjct: 63 LSKTGKKIIVSGCM---ARALPIKIRSVNPKAVLLPPQSIHRIYEAINADDGYIFFDEIK 119
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
+PK+ + +P+ GCL C++C K AR HL S +E++V V+ VI+ G
Sbjct: 120 TFTVMPKII-DGVKATIPVAEGCLDECSFCIVKIARPHLKSIPIENIVNAVKEVISMGAI 178
Query: 240 EVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
E+ ++++D YG DI LP LL +I+ D ++RIG NP ++ +L
Sbjct: 179 EIEITAQDLSVYGYDIYGEYALPKLLESILEIERED--FVIRIGQLNPRHLVNYLDRFIA 236
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+LR P VY +H+PVQSG++ VL +
Sbjct: 237 ILRDPRVYKHVHIPVQSGNNRVLEAMNR 264
>gi|315651392|ref|ZP_07904417.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315486351|gb|EFU76708.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 485
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 150/304 (49%), Gaps = 23/304 (7%)
Query: 43 NHLSKTGSLSP-KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
N + TG++ K P + + TFGC N DSE ++G LS GY + E+AD+ L
Sbjct: 31 NDIIHTGAIDRGKYPTYKVV---TFGCQMNARDSEKLSGILSGIGYTEAKSEEDADLVLF 87
Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVG 151
NTCTV+ + + + + K +K+ + + GC+ Q + ++++++ + G
Sbjct: 88 NTCTVRENANDRLYGRVGQLKKSKEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFG 147
Query: 152 VQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209
I ++ E++ + LK + V ++ + LP R+ F + I GC C+YC
Sbjct: 148 THNIYKLAEILFDHLKTKKQIVDVMESADMIVEKLPNKRQYAFKSGVNITFGCNNFCSYC 207
Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIV 267
+ RG S E + ++ ++ADGVKEV L ++ +YG+ D N +LL+ +
Sbjct: 208 IVPYVRGKERSRKPEEITDEIKGLVADGVKEVMLLGQNVNSYGKGLDEKTNFAMLLDEVA 267
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIV 327
DG LR +P + + + E+ + + C + LH+P+QSGS A+L ++
Sbjct: 268 ---KIDGLERLRFMTPHPKDLSDEVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVY 322
Query: 328 PTKS 331
+S
Sbjct: 323 TKES 326
>gi|448327532|ref|ZP_21516856.1| MiaB-like tRNA modifying enzyme [Natrinema versiforme JCM 10478]
gi|445617779|gb|ELY71371.1| MiaB-like tRNA modifying enzyme [Natrinema versiforme JCM 10478]
Length = 417
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 130/263 (49%), Gaps = 21/263 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++ V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIVENVAKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEEIC---EIEGDFRVRVGMANPKGVHGIREELADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGSD VL
Sbjct: 228 FAEYDELYDFLHAPVQSGSDDVL 250
>gi|311068224|ref|YP_003973147.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus 1942]
gi|419823795|ref|ZP_14347329.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus C89]
gi|310868741|gb|ADP32216.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus 1942]
gi|388472034|gb|EIM08823.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus C89]
Length = 509
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 140/278 (50%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 128 LKTLKKENPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVRR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRRGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFD-DITYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ +L H +H+PVQSGS VL +
Sbjct: 307 DDHLVEVLGKGGNLLDH------IHLPVQSGSSEVLKL 338
>gi|76802239|ref|YP_327247.1| hypothetical protein NP3198A [Natronomonas pharaonis DSM 2160]
gi|76558104|emb|CAI49690.1| MiaB-like tRNA modifying enzyme [Natronomonas pharaonis DSM 2160]
Length = 414
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 130/267 (48%), Gaps = 25/267 (9%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GC+ N+ +S + +L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCTSNRGESRQIERKLRDAGHYRVDTPEKADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV---EVVEETLKGHEVRLLHR 176
+ ++ L+V GC+ D ID V E V + E
Sbjct: 63 ELEAETADLIVTGCMALAQGD----------EFGDIDAQVLHWEDVPTAVTNGECPTTTP 112
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
P LD V ILPI GC+ C+YC TK A G + S V V + R ++
Sbjct: 113 DAEPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPPVAENVEKARALVHA 165
Query: 237 GVKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP + +E+
Sbjct: 166 GAKELRITGQDTGVYGWDTGERKLPELLDRIC---DIDGEFRVRLGMANPGGVHGIHEEL 222
Query: 296 AEVL-RHPCVYSFLHVPVQSGSDAVLS 321
A+V + +Y+F+H PVQSGSD VL
Sbjct: 223 ADVFAENEKLYNFIHAPVQSGSDDVLE 249
>gi|444728295|gb|ELW68754.1| CDK5 regulatory subunit-associated protein 1-like 1 [Tupaia
chinensis]
Length = 494
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 73/84 (86%), Gaps = 2/84 (2%)
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
GV E+WL+SEDTGAYGRD+G +LP LL +VA +P +G+ MLR+GMTNPP+ILEHL+E+A
Sbjct: 233 GVCEIWLTSEDTGAYGRDVGTDLPTLLWRLVAVIP-EGA-MLRLGMTNPPYILEHLEEMA 290
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVL 320
++L HP VY+FLH+PVQS SD+VL
Sbjct: 291 KILNHPRVYAFLHIPVQSASDSVL 314
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F V PK K + H S S S IPG +
Sbjct: 10 LDDIEDIVSQEDSKPRDRHF----ARKHVVPKVRKRNAQKHVQEESSPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYQMTENASDADLWLLNSCTVKNPAEDHFRNAI-K 123
Query: 121 CKSA 124
C +A
Sbjct: 124 CLNA 127
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ CL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 122 IKCLNACTYCKTKHARGNLASYPIDELVDRAK 153
>gi|373487449|ref|ZP_09578117.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Holophaga foetida DSM
6591]
gi|372009531|gb|EHP10151.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Holophaga foetida DSM
6591]
Length = 434
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 145/272 (53%), Gaps = 21/272 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++T+GC N DSE ++G L G+A + EEAD+ ++NTC+++ + + +++ +
Sbjct: 3 FFIETWGCQMNDHDSEKLSGMLDKQGFAPAASQEEADLVILNTCSIREKAVHKVYSVLGR 62
Query: 121 CKSAK--KPLV--VAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ K +PL+ VAGC+ Q +D K + V G I ++ +VEE H+ R+
Sbjct: 63 LREEKLQRPLIVGVAGCLAQQEKDALFKRAPHIDFVLGTMAIQQLPRLVEEARARHK-RV 121
Query: 174 LHRKKLPALDL--PKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ ++ P L P+V RR+ ++ I GC ACTYC RG E ++
Sbjct: 122 IDTQQYPDNHLFPPEVTQRRDTAKALVTIIEGCNHACTYCVVPTTRGPERHRPYEDVLAE 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
VR ++ DG +EV ++ +Y G N LL+ +E+ DG +R ++P +
Sbjct: 182 VRQLVKDGYREVEFLGQNVNSY--QGGCNFAELLDR-ASEI--DGLEWIRFTTSHP---M 233
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVL 320
+E+A+ L +P + FLH+P+QSGSDAVL
Sbjct: 234 NFTRELAQTLVSNPKIAPFLHLPIQSGSDAVL 265
>gi|352681870|ref|YP_004892394.1| 2-methylthioadenine synthetase [Thermoproteus tenax Kra 1]
gi|350274669|emb|CCC81314.1| 2-methylthioadenine synthetase [Thermoproteus tenax Kra 1]
Length = 411
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 139/269 (51%), Gaps = 34/269 (12%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC ++D+E +A +L G D E+AD+ L+ TC V+ + I +
Sbjct: 3 LYVETYGCWLAKADAEIIARRL---GGTRVDRPEDADVVLMYTCAVREDGEIRQLKRIRE 59
Query: 121 CKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
A K L+VAGC+ + +++L + + + +EV + +
Sbjct: 60 L--ASKSLIVAGCLAKARPYTIRQLAPSA---------------QLIYPNEVEGGRERTM 102
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIAD 236
AL P + +P+ VGCLG CT+C TK+ R G++ S + +V V+ +A
Sbjct: 103 SALPEPD---GSVIYTVPLQVGCLGNCTFCVTKYTRGGAGYVKSARPDQVVEHVKRAVAK 159
Query: 237 GVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
G +E++L+ +D YG D G NLP LL I+ E+ DG +RIGM+ P + +
Sbjct: 160 GAREIYLTGQDVITYGFDARWQRGWNLPDLLERILREV--DGDYRIRIGMSEPWVFGKFV 217
Query: 293 KEIAEVLR-HPCVYSFLHVPVQSGSDAVL 320
+I ++++ VY F H+PVQSGSD VL
Sbjct: 218 DQILDIVKSDERVYRFFHLPVQSGSDRVL 246
>gi|294496305|ref|YP_003542798.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
gi|292667304|gb|ADE37153.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
Length = 406
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 123/238 (51%), Gaps = 11/238 (4%)
Query: 92 NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRD--LKELEGVSI 149
+ EA + + NTCTVK ++ + I + + ++V GC+PQ D L+ V +
Sbjct: 9 SEREAKVIICNTCTVKDTTEQKILHKIKEWGLQGREVIVTGCMPQVQLDEILENNPEVHV 68
Query: 150 VGVQQIDR---VVEVVEETLKGHEVR---LLHRKKLPALDLPKVRRNKFVEILPINVGCL 203
+G+ + + ++ V E L+G+ +R + L++P+ R + + I I+ GC
Sbjct: 69 LGMNSLLKLGVILNRVHERLEGYSLRPMSVFEDSPEGLLNVPRKRFSPNIHICQISQGCN 128
Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILL 263
C+YC ARG L S+ +S+V + + +G EVWL+S+D YG D ++LP LL
Sbjct: 129 NRCSYCIVTLARGPLYSFDADSIVTDIEQAVYEGCSEVWLTSQDNAQYGMDKEIHLPALL 188
Query: 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
I A +P G +R+GM NP L L E+ VY LH+P+QS SD +L
Sbjct: 189 ERITA-IP--GDFRVRVGMMNPASTLGILDELLRAYSSEKVYKVLHLPIQSASDKILE 243
>gi|448354903|ref|ZP_21543658.1| MiaB-like tRNA modifying protein [Natrialba hulunbeirensis JCM
10989]
gi|445637234|gb|ELY90390.1| MiaB-like tRNA modifying protein [Natrialba hulunbeirensis JCM
10989]
Length = 417
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 133/263 (50%), Gaps = 21/263 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDDADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 SAETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEEICA---IEGDFRVRVGMANPKGVHGIREELADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
+ +Y+FLH PVQSGSD VL
Sbjct: 228 FAANDELYNFLHAPVQSGSDDVL 250
>gi|429217568|ref|YP_007175558.1| MiaB-like tRNA modifying enzyme [Caldisphaera lagunensis DSM 15908]
gi|429134097|gb|AFZ71109.1| MiaB-like tRNA modifying enzyme [Caldisphaera lagunensis DSM 15908]
Length = 447
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 142/271 (52%), Gaps = 14/271 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++TFGC+ ++ DS M LS GY T+ +ADI ++NTC V+ +++ + + +
Sbjct: 17 YIETFGCALSEFDSSTMDSILSQNGYVKTEYPNDADIIIVNTCAVRLDTEAKIMKRLNEI 76
Query: 122 KS--AKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH-R 176
K+ L+V+GC+ + + + S+V Q ++++VV+ ++V L+
Sbjct: 77 KNYYGNARLIVSGCLAKARPSFISRVVPNASLVSPQNSTKILDVVKSE---NKVVLIEGN 133
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ + P + + V + I GC+ C++C TK AR L SY ++ ++ ++
Sbjct: 134 RDTDFMPTPPIEDS--VATIMIEEGCVDNCSFCITKLARQTLKSYKPRVILDTIKKLVEK 191
Query: 237 GVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
GVKE+ L+ +D AYG D L L+N I+ ++ G +RIGM P +E +
Sbjct: 192 GVKEIRLTGQDIAAYGLDFNPKFRLDELINIILDKIK--GEYRIRIGMMTPDKSIEIIDN 249
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E+ + ++ F H+PVQSG + +L + +
Sbjct: 250 LLELYKDERIFKFFHIPVQSGDNNMLKIMNR 280
>gi|448384078|ref|ZP_21563076.1| MiaB-like tRNA modifying enzyme [Haloterrigena thermotolerans DSM
11522]
gi|445659067|gb|ELZ11879.1| MiaB-like tRNA modifying enzyme [Haloterrigena thermotolerans DSM
11522]
Length = 417
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 131/263 (49%), Gaps = 21/263 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D E+AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPEQADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFARADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +++A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREDLADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGSD VL
Sbjct: 228 FAENDELYDFLHAPVQSGSDDVL 250
>gi|334137188|ref|ZP_08510632.1| ribosomal protein S12 methylthiotransferase RimO [Paenibacillus sp.
HGF7]
gi|333605272|gb|EGL16642.1| ribosomal protein S12 methylthiotransferase RimO [Paenibacillus sp.
HGF7]
Length = 442
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 142/279 (50%), Gaps = 25/279 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
TE + + T GC N DSE M+G + GY++ +N+EEA + ++NTC ++ T
Sbjct: 2 TEKVRVVTLGCEKNLVDSEIMSGLVDQRGYSVVENNEEATVIIVNTCGFIDAAKEESVTT 61
Query: 118 IAKCKSAK-----KPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
I K K L+V+GC+ Q ++ +KE+ + IVG + +++E LKG
Sbjct: 62 ILDMADLKRTGNLKALIVSGCLTQRYKEELMKEMPEIDGIVGTGDFHNINAIIDEALKGK 121
Query: 170 EVRLL------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+ + + + LP KV ++ + I GC ACT+C RG S ++
Sbjct: 122 KPVYVGNPVFNYEQALPR----KVSTPRYTAYVKIAEGCDNACTFCSIPIMRGKFRSRSM 177
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG 281
ES++ R + + GVKEV L ++D+ YG D+ LP LLN V+E+ +G +R+
Sbjct: 178 ESVISEARQLASQGVKEVSLIAQDSTNYGTDLYDKFMLPELLNR-VSEV--EGIEWVRLH 234
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P F + L I + +P V ++ +P+Q SDA+L
Sbjct: 235 YAYPGFFTDEL--IETMAANPKVCKYIDMPLQHSSDAIL 271
>gi|89100706|ref|ZP_01173562.1| YmcB [Bacillus sp. NRRL B-14911]
gi|89084581|gb|EAR63726.1| YmcB [Bacillus sp. NRRL B-14911]
Length = 514
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++TFGC N+ D+E MAG + GY TD E+A++ L+NTC ++ +++ + +
Sbjct: 71 FYIRTFGCQMNEHDTEVMAGIFLSLGYEPTDTVEDANVILLNTCAIRENAENKVFGELGH 130
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K KK L V GC+ Q ++ LK + V I G I R+ +++E E
Sbjct: 131 LKHLKKERPDLLLGVCGCMSQEESVVNKILKTYDQVDMIFGTHNIHRLPNILQEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G +E+ L ++ AYG+D +L L ++ E+ +R ++P
Sbjct: 251 EVRQLAAQGYQEITLLGQNVNAYGKDF-TDLQYGLGDLMDEIRKIDIPRIRFTTSHPRDF 309
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ +L H +H+PVQSGS VL +
Sbjct: 310 DDHLIEVLAKGGNLLEH------IHLPVQSGSTDVLKI 341
>gi|448356310|ref|ZP_21545043.1| MiaB-like tRNA modifying protein [Natrialba chahannaoensis JCM
10990]
gi|445653343|gb|ELZ06214.1| MiaB-like tRNA modifying protein [Natrialba chahannaoensis JCM
10990]
Length = 417
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 133/263 (50%), Gaps = 21/263 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDDADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 SAETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEDICA---IEGDFRVRVGMANPKGVHGIREELADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
+ +Y+FLH PVQSGSD VL
Sbjct: 228 FAANDELYNFLHAPVQSGSDDVL 250
>gi|415886653|ref|ZP_11548433.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus MGA3]
gi|387587340|gb|EIJ79663.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus MGA3]
Length = 514
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 137/274 (50%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMGLGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ K KP L V GC+ Q ++ LK+ + V I G I R+ ++ E E
Sbjct: 131 LKALKMEKPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPNILHEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDIIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 251 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMEEIRKIDIPRVRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS VL +
Sbjct: 310 DDHLIEV--LAKGGNLMPHIHLPVQSGSTDVLKI 341
>gi|433592660|ref|YP_007282156.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
gi|448335096|ref|ZP_21524248.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
gi|433307440|gb|AGB33252.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
gi|445618032|gb|ELY71616.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
Length = 417
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 131/263 (49%), Gaps = 21/263 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D E+AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPEQADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFARADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +++A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREDLADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGSD VL
Sbjct: 228 FAENDELYDFLHAPVQSGSDDVL 250
>gi|348026751|ref|YP_004766556.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera elsdenii DSM
20460]
gi|341822805|emb|CCC73729.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera elsdenii DSM
20460]
Length = 373
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 135/268 (50%), Gaps = 18/268 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
++GC N SDSE+ AGQL GY T++ + AD+ LINTC V+ ++ I + K
Sbjct: 13 SYGCQANMSDSEHYAGQLEELGYHHTEDLDTADVILINTCCVRETAEDKTLGKIGELKHL 72
Query: 125 KKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K + V GC+ Q +D K + +V G I +++E+++E + +
Sbjct: 73 KTQNPDLIIAVTGCMAQEWQDKLFKRAPHIDLVIGTHNIHKLIELIQERRSKADHYMAAD 132
Query: 177 KKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
LPA D+P R KF +PI GC CTYC + RG S ++++V ++ V A
Sbjct: 133 MSLPAFHDMPVKRFQKFFAWIPIMNGCNKFCTYCIVPYVRGREVSRPIDAIVEEIKKVAA 192
Query: 236 DGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHL 292
+G KE+ L ++ +YG D+ G + L+ A+ DG +R ++P +
Sbjct: 193 EGYKEITLLGQNVNSYGLDLKDGTDFSKLVAAVD---DIDGIERVRYMTSHPKDMTFAMI 249
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
IA+ + V + +H+P+Q GS+ +L
Sbjct: 250 DAIADSQK---VVNHMHLPIQCGSNELL 274
>gi|448319224|ref|ZP_21508729.1| MiaB-like tRNA modifying enzyme [Natronococcus jeotgali DSM 18795]
gi|445596433|gb|ELY50519.1| MiaB-like tRNA modifying enzyme [Natronococcus jeotgali DSM 18795]
Length = 417
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 129/264 (48%), Gaps = 23/264 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ L + GC+ QG +E + G V D V E V E
Sbjct: 65 SAETADLYITGCMALAQG----EEFAAADVDGRVLHWDEVPEAV----TNGECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +E V + ++ G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKRATGKIDSPPIEENVRKAEALLHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIGVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G L LL I A DG +R+GM NP + +E+AE
Sbjct: 170 KELRITGQDTGVYGWDEGERKLHRLLEEICA---IDGEFRVRVGMANPKGVHGIREELAE 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVL 320
V + +Y FLH PVQSGSD VL
Sbjct: 227 VFAENDELYDFLHAPVQSGSDDVL 250
>gi|331001874|ref|ZP_08325395.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412197|gb|EGG91591.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae oral taxon
107 str. F0167]
Length = 440
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 140/272 (51%), Gaps = 21/272 (7%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLI--A 119
M + GC N DSE M G ++ G+ TD EEA++ +INTC ++S + +++ ++ A
Sbjct: 5 MVSLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEAEVMIINTCGFIQSAKEESINAILDAA 64
Query: 120 KCKS--AKKPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH-EVRL 173
+ K A K L+V GC+ Q +D +KE+ V +++G D++VE VE+ L G +
Sbjct: 65 RLKEDGALKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEDVLGGEIKNEF 124
Query: 174 LHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
L +LP++ R+N + L I GC CTYC RG+ SY ++ L+ +
Sbjct: 125 LDLDRLPSI--SNKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSYPMDDLITQA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + A G+KE+ L +++T YG D+ LP LL + G +RI P I
Sbjct: 183 KDLAAQGIKELILVAQETTLYGVDLYGEKTLPKLLKELA---KVSGIEWIRILYCYPEEI 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ L ++ C Y L +P+Q SD +L
Sbjct: 240 TDELIDVIANEEKVCKY--LDIPIQHASDNIL 269
>gi|325295204|ref|YP_004281718.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065652|gb|ADY73659.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 437
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 144/283 (50%), Gaps = 39/283 (13%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N ++ YM Q GY + D SEEADI+++NTCTV S + S + K KS
Sbjct: 8 TLGCKMNFHETAYMEEQFKKRGYKIVDFSEEADIYIVNTCTVTSVADSKSRKALRKAKSR 67
Query: 125 K-KPLVVA-GC----VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K LVVA GC P+ L+E++ I G + ++V++VE+ ++G K
Sbjct: 68 NPKALVVATGCYSEVYPEKVEKLEEVD--FITGNVEKFQIVDIVEKRIEG---------K 116
Query: 179 LPALDLPKV-RRNKFV------------EILPINVGCLGACTYCKTKHARGHLGSYTVES 225
LP L L + + N+F L I GC C+YC ARG + S E
Sbjct: 117 LPRLYLRGIWKENQFYPLTIRHYEGKTRAFLKIQQGCELFCSYCIIPKARGKMLSEKPEK 176
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
++ +V+ +I G KE+ L+ G YG D+ ++L L+ IV ++P G LRI
Sbjct: 177 VLEQVKELINSGYKEIVLTGTHLGGYGLDLEESLSLAKLIEKIV-KIP--GLYRLRISSV 233
Query: 284 NPPFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSVSQK 325
P +E E+ EV+ P + LH+P+QSGSD +L++ ++
Sbjct: 234 EP---IEFSDELIEVVTSSPKIAPHLHIPLQSGSDRILNLMKR 273
>gi|291279773|ref|YP_003496608.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans
SSM1]
gi|290754475|dbj|BAI80852.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans
SSM1]
Length = 439
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 138/276 (50%), Gaps = 17/276 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++KTFGC N+ DSE +A GY+LTDN EEA +INTC+V+ +++ + +
Sbjct: 3 LFIKTFGCQMNEYDSERIAAIFQERGYSLTDNLEEASFAVINTCSVREKPYHKVESELGR 62
Query: 121 CKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
K KK + V GCV Q G + L + V +V G IDR+ +++ KG +
Sbjct: 63 LKKFKKLNPDFKIAVCGCVAQQDGEKFLDRFDYVDLVFGTSAIDRLHSLIDLVEKGERI- 121
Query: 173 LLHRKKLPALDLPKVRRNKFVE-ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ L +P R K V + I GC C+YC + RG S ++ ++
Sbjct: 122 CDTSEGDDELSIPVFGRGKKVSAFVTIMKGCDNFCSYCIVPYVRGREKSRKPSEILDEIK 181
Query: 232 TVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
++ +GVKEV L ++ +YG+ D +N P LL + +G +R ++P
Sbjct: 182 YLVNNGVKEVTLLGQNVNSYGKGLDEDINFPKLLYKV---HDINGLERIRFVTSHPKDFD 238
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ L I + P V +LH+P+Q+GS+ VL + +
Sbjct: 239 DEL--IFAIRDLPKVCEYLHLPLQAGSNKVLKMMNR 272
>gi|421076008|ref|ZP_15537010.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans JBW45]
gi|392525867|gb|EIW48991.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans JBW45]
Length = 444
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 135/267 (50%), Gaps = 14/267 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
+ GC+ N D+E M G L+ +TDN EADI +INTC+ + S + ++ T++
Sbjct: 8 SLGCAKNLVDTEVMLGLLATNDIKITDNPHEADILIINTCSFIDSAKEESISTILQMADY 67
Query: 124 AK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
K K L+VAGC+ Q + L EL V +IVG R++E + + L H+ LL
Sbjct: 68 KKHGNCKCLIVAGCLGQRYQQELLDELPEVDAIVGTGAWHRIIEAINDILVDHKRVLLVG 127
Query: 177 KKLPALD--LPKVRRNKFVE-ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ D +P++ F + I GC C+YC RG S T+ES++ V+ +
Sbjct: 128 ETDTLYDETMPRISTTPFYSAYVKIAEGCSNCCSYCVIPKVRGSFRSRTMESIIAEVKNL 187
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+A GVKE+ L ++DT +YGRD+ P L + + + DG +R+ P + L
Sbjct: 188 VATGVKEINLIAQDTTSYGRDL-YKSPKLTDLLKELVKIDGLMWVRLLYCYPKYFSNELI 246
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+ C Y + +P+Q +D +L
Sbjct: 247 ELIATESKICKY--IDLPLQHANDDIL 271
>gi|222098978|ref|YP_002533546.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
neapolitana DSM 4359]
gi|221571368|gb|ACM22180.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga neapolitana
DSM 4359]
Length = 443
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-AMDTL-- 117
Y+KTFGC N++DSE MAG L G+ EEAD+ +INTC V+ S+ A L
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 118 IAKCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
+ K K +K +V VAGCV + R+ L E ++G + + RV E V++ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVPRVTEAVKKALEGEKVALFE 122
Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H + +LP++R ++ + I GC CTYC + RG S + ++ V+ +
Sbjct: 123 DHLDEYTH-ELPRIRTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSRPMADILEEVKKL 181
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AEQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSDE 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L E+ + ++P V +H+PVQSGS+ +L + +
Sbjct: 239 LIEV--IAKNPKVAKSVHLPVQSGSNRILKLMNR 270
>gi|16329745|ref|NP_440473.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803]
gi|383321487|ref|YP_005382340.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. GT-I]
gi|383324657|ref|YP_005385510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-P]
gi|383490541|ref|YP_005408217.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-N]
gi|384435807|ref|YP_005650531.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803]
gi|451813905|ref|YP_007450357.1| hypothetical protein MYO_15840 [Synechocystis sp. PCC 6803]
gi|2501538|sp|P73127.1|MIAB_SYNY3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|1652230|dbj|BAA17153.1| sll0996 [Synechocystis sp. PCC 6803]
gi|339272839|dbj|BAK49326.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803]
gi|359270806|dbj|BAL28325.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. GT-I]
gi|359273977|dbj|BAL31495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-N]
gi|359277147|dbj|BAL34664.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-P]
gi|451779874|gb|AGF50843.1| hypothetical protein MYO_15840 [Synechocystis sp. PCC 6803]
Length = 451
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 139/279 (49%), Gaps = 24/279 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DSE MAG L G TD+ +AD+ L NTC+++ ++ + + + +
Sbjct: 12 TFGCQMNKADSERMAGILENLGMTYTDDPNQADLVLYNTCSIRDNAEQKVYSYLGRQAKR 71
Query: 125 KK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---RL 173
K+ LVVAGCV Q G + L+ + + +V G Q +R+ +++E+ G +V
Sbjct: 72 KQVEPELTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDQLLEQVWAGSQVVATES 131
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LH + D+ K RR V + I GC C+YC + RG S T E++ G +
Sbjct: 132 LHIME----DITKPRRESTVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYGEMEV 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ G KEV L ++ AYGRD+ G +L L + + +G LR ++P
Sbjct: 188 LAQQGFKEVTLLGQNIDAYGRDLPGTTPSGRHLHTLTDLLYHVHDIEGIDRLRFATSHPR 247
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L + + L P V H+P QSG + +L ++
Sbjct: 248 YFTERLIQACQEL--PKVCEHFHIPFQSGDNDILKAMKR 284
>gi|392971900|ref|ZP_10337292.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus equorum
subsp. equorum Mu2]
gi|403046776|ref|ZP_10902245.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
sp. OJ82]
gi|392509613|emb|CCI60582.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus equorum
subsp. equorum Mu2]
gi|402763472|gb|EJX17565.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
sp. OJ82]
Length = 513
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 137/276 (49%), Gaps = 15/276 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +KT+GC N D+E MAG L A GY T++ AD+ LINTC ++ ++S + + I
Sbjct: 67 KTFLIKTYGCQMNAHDTEVMAGILGALGYTATEDINHADVILINTCAIRENAESKVFSEI 126
Query: 119 AKCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL-- 166
K K+ + V GC+ Q ++ LK + V I+ G I R+ E++EE
Sbjct: 127 GNLKHLKREKPETVIGVCGCMSQEESVVNKILKSYQNVDIIFGTHNIHRLPEILEEAYLS 186
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
K V + ++ +LPKVR+ + I GC CTYC RG S E +
Sbjct: 187 KAMVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDI 246
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ VR + G +E+ L ++ AYG+DI L L ++ ++ +R ++P
Sbjct: 247 IAEVRDLARQGYQEITLLGQNVNAYGKDIE-GLEYGLGDLLEDITQIDIPRVRFTTSHPW 305
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + +H+PVQSG++AVL +
Sbjct: 306 DFTDRMIEV--IANGGNIVPHVHLPVQSGNNAVLKI 339
>gi|373469162|ref|ZP_09560371.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
oral taxon 082 str. F0431]
gi|371765044|gb|EHO53408.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
oral taxon 082 str. F0431]
Length = 475
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 139/276 (50%), Gaps = 19/276 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N DSE ++G LS GY +N E+AD+ L NTCTV+ + + + + K
Sbjct: 41 TFGCQMNARDSEKLSGILSGIGYLEAENEEDADLVLFNTCTVRENANDRLYGRVGQLKKN 100
Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE--VR 172
K+ + + GC+ Q + ++++++ + G I ++ E++ + LK + V
Sbjct: 101 KEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFDHLKTKKQVVD 160
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ + LP R+ F + I GC C+YC + RG S E ++ ++
Sbjct: 161 VMESADMIVEKLPNKRQFAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDEIKG 220
Query: 233 VIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ADGVKEV L ++ +YG+ D N +LL+ + +G LR +P + +
Sbjct: 221 LVADGVKEVMLLGQNVNSYGKGLDEKTNFAMLLDEVS---KIEGLERLRFMTPHPKDLSD 277
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKI 326
+ E+ + + C + LH+P+QSGS ++L ++
Sbjct: 278 EVIEVMKKNKKICKH--LHLPLQSGSSSILKKMNRV 311
>gi|358067482|ref|ZP_09153961.1| MiaB-like tRNA modifying enzyme YliG [Johnsonella ignava ATCC
51276]
gi|356694398|gb|EHI56060.1| MiaB-like tRNA modifying enzyme YliG [Johnsonella ignava ATCC
51276]
Length = 443
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 137/271 (50%), Gaps = 20/271 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
+ GC N DSE+M G ++ GY TD+ +EADI ++NTC + Q +++ ++ K
Sbjct: 7 SLGCDKNLVDSEHMLGLVAERGYTYTDDEKEADIIIVNTCCFILDAKQESVEAILETAKL 66
Query: 124 AK----KPLVVAGCVPQGSRD-LKEL--EGVSIVGVQQIDRVVEVVEETL-KGHEVRL-- 173
+ K L+V GC+ Q +D +KE E +++G D++ EV++ K H ++
Sbjct: 67 KREGKLKALIVTGCMAQRYQDEIKEEIPEVDALLGTSSYDKIAEVIDSIFSKIHSAKIDE 126
Query: 174 -LHRKKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L +LPAL + L I GC CTYC RG+ SY +E L+ R
Sbjct: 127 FLDLNRLPALSKKRYHSTGGCYAYLKIAEGCDKHCTYCIIPSLRGNYRSYPIELLLDEAR 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI-GVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ DG+KE+ L +++T YG+DI G LP LL + A +G +RI P I
Sbjct: 187 QLANDGIKELILVAQETTVYGKDIYGYKALPKLLKELCA---IEGFRWIRILYCYPEEID 243
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ L ++ + C Y L +P+Q SD +L
Sbjct: 244 DELIDVMTTEKKVCRY--LDIPIQHSSDKIL 272
>gi|261419508|ref|YP_003253190.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
sp. Y412MC61]
gi|319766323|ref|YP_004131824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
gi|261375965|gb|ACX78708.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC61]
gi|317111189|gb|ADU93681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
Length = 531
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 135/274 (49%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD EEA++ L+NTC ++ +++ + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGELGY 141
Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q + LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYSLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS +L +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKM 352
>gi|374605163|ref|ZP_09678102.1| MiaB-like tRNA modifying protein YliG [Paenibacillus dendritiformis
C454]
gi|374389225|gb|EHQ60608.1| MiaB-like tRNA modifying protein YliG [Paenibacillus dendritiformis
C454]
Length = 481
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 148/279 (53%), Gaps = 25/279 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDT 116
TE I + T GC N DSE M+G + +G+ L +N+E+A + ++NTC + + + +++T
Sbjct: 41 TEQIKIVTLGCDKNLVDSEIMSGIMDQYGHELVENAEDATVIIVNTCGFIDAAKEESVNT 100
Query: 117 LIA----KCKSAKKPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
++ K + K L+V+GC+ Q ++ L+E+ + IVG ++ ++V E L+G
Sbjct: 101 ILELADLKETARLKALIVSGCLTQRYKEQLLEEMPEIDGIVGTGDFHKINDIVAEALQGK 160
Query: 170 E-VR-----LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+ VR + + LP KV ++ + I GC CT+C RG S ++
Sbjct: 161 KPVRVGNPVFNYEQILPR----KVATPRYTAYVKIAEGCDNNCTFCSIPIMRGKFRSRSM 216
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG 281
+S++ V+ + GVKE+ L ++D+ YG D+ G LP L+N V+E+P G +R+
Sbjct: 217 KSILAEVKQLADQGVKEISLIAQDSTNYGVDLYDGFKLPELMNK-VSEVP--GVEWVRLH 273
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P F E L I + +P V ++ +P+Q D +L
Sbjct: 274 YAYPGFFTEEL--IDTIASNPKVCKYVDMPLQHSEDTIL 310
>gi|403069111|ref|ZP_10910443.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oceanobacillus
sp. Ndiop]
Length = 518
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 143/274 (52%), Gaps = 23/274 (8%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ D+E MAG L+ GY T N+E+ADI L+NTC ++ +++ + I K
Sbjct: 79 IRTYGCQMNEHDTEVMAGILTEMGYESTSNTEDADIILLNTCAIRENAENKVFGEIGHLK 138
Query: 123 SAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
K KP + V GC+ Q R LK+ + + ++ G I R+ ++++E L G E
Sbjct: 139 PLKLEKPDLIIGVCGCMSQEESVVDRILKKHQHIDLIFGTHNIHRLPQLIKEALFGKEMI 198
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ +LPKVR+ K + I GC CTYC RG S E ++ V
Sbjct: 199 VEVWSKEGDVIENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSRRPEDIIQEV 258
Query: 231 RTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAI-VAELPPDGSTMLRIGMTNPP 286
R ++A G +EV L ++ AYG+ DI L L+N I ++P +R ++P
Sbjct: 259 RHLVAQGYQEVTLLGQNVNAYGKDFEDIQYGLGDLMNDIHKIDIP-----RVRFTTSHPR 313
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ L E+ + + + +H+PVQSGS +L
Sbjct: 314 DFDDRLIEV--LAQGGNLLDHIHLPVQSGSTEIL 345
>gi|345005921|ref|YP_004808774.1| MiaB-like tRNA modifying enzyme [halophilic archaeon DL31]
gi|344321547|gb|AEN06401.1| MiaB-like tRNA modifying enzyme [halophilic archaeon DL31]
Length = 416
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 135/272 (49%), Gaps = 37/272 (13%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D + AD+ ++N+CTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRQIESALRDAGHYRVDGPKAADVAILNSCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
L+V GC+ ++ Q+ D G + ++LH ++P
Sbjct: 65 AEETADLIVTGCM-------------ALAQGQEFDEA---------GLDAQVLHWDEVPE 102
Query: 182 LDL--------PKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
P V + + ILPI GC+ C+YC TK A G + S ++E V + R
Sbjct: 103 AVTNGECPTPGPGVEPVLDGVIGILPIARGCMSNCSYCITKQATGRIDSPSIEENVEKAR 162
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G KE+ ++ +DTG YG D G +LP LL+ I +G +R+GM NP I
Sbjct: 163 ALVHAGAKELRVTGQDTGVYGWDDGERDLPELLDRICN---IEGEFRVRLGMANPGGIHG 219
Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLS 321
+E+A+V R+ +Y+F+H PVQSGS+ VL
Sbjct: 220 IREELADVFARNEKLYTFIHAPVQSGSNEVLE 251
>gi|302391395|ref|YP_003827215.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
gi|302203472|gb|ADL12150.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
Length = 436
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 133/277 (48%), Gaps = 15/277 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
E + T GC NQ D+E M +A Y L D S+EAD+++INTCTV ++
Sbjct: 2 ERVAFYTLGCKVNQYDTEAMINLFTAADYELVDFSDEADVYVINTCTVTHQGARKSRKMV 61
Query: 119 AKCKSAKKPLVVA--GCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL 174
+ +VA GC PQ S ++ E++GV IVG + R+V++VE+ + E
Sbjct: 62 RRANRRNPQAIVAVVGCYPQVSPAEILEIDGVDLIVGTEGQSRIVDLVEQAKRADESLNF 121
Query: 175 HRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R A D ++ +KF E L + GC C YC + RG + S +E V
Sbjct: 122 VRDISEAEDFEEIPLDKFEERTRASLKVQDGCDNFCAYCIIPYTRGSVRSRRIEDAVAEA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + A G KE+ L+ GAYG+++ ++L LL ++ G +R+ +
Sbjct: 182 KRLAASGFKEIVLTGIHLGAYGKEVEEEIDLVTLLKELI---EISGLERIRLSSIEATEV 238
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L ++ C + LH+P+Q+GSD +L+ +
Sbjct: 239 TSDLIDLIATEEKLCRH--LHLPLQNGSDKILAAMNR 273
>gi|224476428|ref|YP_002634034.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
carnosus subsp. carnosus TM300]
gi|222421035|emb|CAL27849.1| putative radical SAM superfamily protein [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 513
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 139/275 (50%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++KTFGC N D+E MAG A GY L ++ +AD+ L+NTC ++ +++ + + I
Sbjct: 68 TFFIKTFGCQMNAHDTEVMAGIFEALGYTLAEDILKADVILLNTCAIRENAENKVFSEIG 127
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K K+ + V GC+ Q ++ LK + V I G I ++ E++EE K
Sbjct: 128 NLKHLKRDRPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYMSK 187
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ + ++ +LPKVR + F + I GC CTYC RG S + ++
Sbjct: 188 AMVIDVWSKEGDVIENLPKVRDDYFKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 247
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + G +E+ L ++ +YG+D+ ++ L + ++ +R ++P
Sbjct: 248 DEVRDLARQGYQEITLLGQNVNSYGKDLK-DIEYDLGDLFEDISKIDIPRVRFTTSHPWD 306
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+H+ ++ + + + +H+PVQSG+DAVL +
Sbjct: 307 FTDHMIDV--IAKGGNIVPHIHLPVQSGNDAVLKI 339
>gi|403378736|ref|ZP_10920793.1| MiaB-like tRNA modifying protein YliG [Paenibacillus sp. JC66]
Length = 442
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 149/278 (53%), Gaps = 23/278 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDT 116
+E I + T GC N+ DSE M+G + GY+L + EEA + ++NTC + + + +++T
Sbjct: 2 SEKIMVVTLGCEKNRVDSEIMSGLIHERGYSLVEEKEEATVIIVNTCGFIDAAKEESVNT 61
Query: 117 LI--AKCKSAK--KPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
++ A+ K K L+V+GC+ Q ++ +KE+ + IVG R+ E+V+E L G
Sbjct: 62 ILDMAELKQTANLKALIVSGCLTQRYKEELMKEMPEIDGIVGTGDFVRINEIVDEALAGK 121
Query: 170 EVRLLHRKKLPALDLPKV--RRN---KFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ ++ P + +V RR ++ + I GC ACT+C RG S ++E
Sbjct: 122 KPIMVGN---PIFNYEQVLPRRMGTPRYTAYVKIAEGCDNACTFCSIPIMRGKFRSRSIE 178
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGM 282
S++ V + GVKE+ L ++D+ YG D+ LP LLN V+E+P G +R+
Sbjct: 179 SILTEVGQLAEQGVKEISLIAQDSTNYGTDLYEKFMLPELLNK-VSEVP--GIEWVRLHY 235
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P F + L ++ + +P V ++ +P+Q D++L
Sbjct: 236 AYPGFFTDELIDV--IANNPKVCKYVDLPLQHSEDSIL 271
>gi|297530521|ref|YP_003671796.1| tRNA-i(6)A37 thiotransferase protein MiaB [Geobacillus sp. C56-T3]
gi|448237459|ref|YP_007401517.1| tRNA-i(6)A37 modification enzyme [Geobacillus sp. GHH01]
gi|297253773|gb|ADI27219.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. C56-T3]
gi|445206301|gb|AGE21766.1| tRNA-i(6)A37 modification enzyme [Geobacillus sp. GHH01]
Length = 531
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 135/274 (49%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD EEA++ L+NTC ++ +++ + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGELGY 141
Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q + LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS +L +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKM 352
>gi|56419838|ref|YP_147156.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
kaustophilus HTA426]
gi|375008279|ref|YP_004981912.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Geobacillus thermoleovorans CCB_US3_UF5]
gi|81347575|sp|Q5L0E8.1|MIAB_GEOKA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|56379680|dbj|BAD75588.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|359287128|gb|AEV18812.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Geobacillus thermoleovorans CCB_US3_UF5]
Length = 531
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 135/274 (49%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD EEA++ L+NTC ++ +++ + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGELGY 141
Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q + LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS +L +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKM 352
>gi|297568782|ref|YP_003690126.1| RNA modification enzyme, MiaB family [Desulfurivibrio alkaliphilus
AHT2]
gi|296924697|gb|ADH85507.1| RNA modification enzyme, MiaB family [Desulfurivibrio alkaliphilus
AHT2]
Length = 452
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 139/289 (48%), Gaps = 34/289 (11%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T +Y++TFGC N+ DSE M +S Y T EEAD ++NTC+++ + +L
Sbjct: 4 TRNLYIETFGCQMNERDSEIMTQLMSQAAYLETSRPEEADCIVVNTCSIRGKAAQKAYSL 63
Query: 118 IAKCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVE----ET 165
+ + KK + VAGCV Q G LK++ + +V G Q I R+ E+VE +
Sbjct: 64 LGGYRRLKKRRPELVIAVAGCVAQQDGENLLKKMPHLDLVIGPQNIYRLPELVESARRQA 123
Query: 166 LKGHEVRLLHRKKLPALDLPKV-----RRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
+ L +P LP+V +FV I+ GC CTYC H RG S
Sbjct: 124 TRTTATELSKDFVIPPF-LPQVNGTATNHKRFVTIMQ---GCNNFCTYCVVPHTRGREVS 179
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--------VNLPILLNAIVAELPP 272
E ++ VR + GV+EV L ++ +YG+D G + P LL A+VA
Sbjct: 180 RKPEDIINEVRHLADHGVREVTLLGQNVNSYGQDRGPAGTTGQIDDFPALLQAVVA---V 236
Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+G +R ++P + L + L C + H+PVQSGSD +L+
Sbjct: 237 EGIYRVRFTTSHPKDLSPELIDCFAQLNKLCPH--FHLPVQSGSDRILA 283
>gi|448731554|ref|ZP_21713853.1| MiaB-like tRNA modifying enzyme [Halococcus saccharolyticus DSM
5350]
gi|445791882|gb|EMA42501.1| MiaB-like tRNA modifying enzyme [Halococcus saccharolyticus DSM
5350]
Length = 414
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 141/265 (53%), Gaps = 23/265 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++T+GC+ N+ +S + +L G+ D + AD+ ++NTCTV +++ M
Sbjct: 3 SYHLETYGCTANRGESRTIERRLRDGGHHPVDGPKAADVAILNTCTVVETTETNMLRRAR 62
Query: 120 KCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ +S LVV GC+ QG + +L+ ++ G ++ VV L G E +
Sbjct: 63 ELESETADLVVTGCMALAQGE-EFADLD-ATVCGWDEVPEVV------LNG-ECPTVTPG 113
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD + ILPI GC+ C+YC TKHA G + S VE V + R ++ G
Sbjct: 114 TEPILD-------GVIGILPIARGCMSDCSYCITKHATGKIDSPPVEENVEKARALVHAG 166
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G L LLN I A DG +R+GM NP + +E+A
Sbjct: 167 AKEIRITGQDTGVYGWDDGERKLHELLNRICA---IDGDFRVRVGMANPKGVHGIREELA 223
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVL 320
EV + +Y+FLH PVQSGSD VL
Sbjct: 224 EVFAENEKLYNFLHAPVQSGSDDVL 248
>gi|284163849|ref|YP_003402128.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
gi|284013504|gb|ADB59455.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
Length = 417
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 130/263 (49%), Gaps = 21/263 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 SEETADLFITGCMALAQG----EEFRAADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPPIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL+ I A +G +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLSEICA---IEGDFRVRVGMANPKGVHGIREELAAV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGS+ VL
Sbjct: 228 FAENEELYDFLHAPVQSGSNDVL 250
>gi|394994048|ref|ZP_10386784.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
916]
gi|393805127|gb|EJD66510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
916]
Length = 509
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 140/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS A+L +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKM 338
>gi|225865753|ref|YP_002751131.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
gi|225786232|gb|ACO26449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
Length = 509
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 144/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R ++A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLVANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>gi|404482175|ref|ZP_11017402.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales bacterium
OBRC5-5]
gi|404344336|gb|EJZ70693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales bacterium
OBRC5-5]
Length = 475
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 137/279 (49%), Gaps = 25/279 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N DSE ++G L+ GY +N E+AD+ L NTCTV+ + + + K +
Sbjct: 41 TFGCQMNARDSEKLSGILTGIGYMEAENEEDADLVLFNTCTVRENANDRLYGRVGHLKKS 100
Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS--------IVGVQQIDRVVEVVEE--TLKGH 169
K+ + + GC+ Q +++E+E + + G I ++ E++ E T K
Sbjct: 101 KEKNPDMIIGICGCMMQ---EVEEVEKIKKSYRHVDLVFGTHNIYKLAEILFEHLTTKKQ 157
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
V ++ ++ LP R F + I GC C+YC + RG S E ++
Sbjct: 158 VVNVMESAEMIVEKLPNKREFAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDE 217
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
++ ++ADGVKE+ L ++ +YGR + ++ LL+ I DG LR +P
Sbjct: 218 IKGLVADGVKEIMLLGQNVNSYGRGLEEEISFATLLDRIAQ---IDGLERLRFMTPHPKD 274
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKI 326
+ + + E+ + + C + LH+P+QSGS +L ++
Sbjct: 275 LSDEVIEVMKKNKKICKH--LHLPLQSGSSDILKKMNRV 311
>gi|154686118|ref|YP_001421279.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens FZB42]
gi|429505255|ref|YP_007186439.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|229890448|sp|A7Z4X2.1|MIAB_BACA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|154351969|gb|ABS74048.1| YmcB [Bacillus amyloliquefaciens FZB42]
gi|429486845|gb|AFZ90769.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
Length = 509
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 140/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS A+L +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKM 338
>gi|410456328|ref|ZP_11310191.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
bataviensis LMG 21833]
gi|409928242|gb|EKN65360.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
bataviensis LMG 21833]
Length = 514
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 139/275 (50%), Gaps = 17/275 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD +E+A++ L+NTC ++ +++ + +
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFLALGYEPTDRTEDANVILLNTCAIRENAENKVFGELGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ K KP + V GC+ Q ++ LK + V I G I R+ ++ E E
Sbjct: 131 LKALKLEKPDLLIGVCGCMSQEESVVNKILKTYQQVDMIFGTHNIHRLPNILHEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR K + I GC CTYC RG S E ++
Sbjct: 191 MVVEVWSKEGDVIENLPKVRRGKIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEEIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + A G +EV L ++ AYG+D+ GVN L ++ +L +R ++P
Sbjct: 251 EVRQLAAQGYQEVTLLGQNVNAYGKDLEGVNYG--LGELMDDLRKIDIPRIRFTTSHPRD 308
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS VL +
Sbjct: 309 FDDRLIEV--LAKGGNLMDHIHLPVQSGSTDVLKI 341
>gi|375362347|ref|YP_005130386.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|421731627|ref|ZP_16170750.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|451346926|ref|YP_007445557.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens IT-45]
gi|371568341|emb|CCF05191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|407073840|gb|EKE46830.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|449850684|gb|AGF27676.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens IT-45]
Length = 509
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 140/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS A+L +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKM 338
>gi|452855648|ref|YP_007497331.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452079908|emb|CCP21666.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 509
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 140/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS A+L +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKM 338
>gi|399577306|ref|ZP_10771059.1| miab-like tRNA modifying enzyme [Halogranum salarium B-1]
gi|399237689|gb|EJN58620.1| miab-like tRNA modifying enzyme [Halogranum salarium B-1]
Length = 416
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 131/261 (50%), Gaps = 17/261 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S ++ L G+ +AD+ ++NTCTV ++ M T +
Sbjct: 5 HIETYGCTSNRGESRHIEQALRDGGHHPASGPGDADVAILNTCTVVEKTERNMLTRAKEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+ L++ GC+ L + E GV + V + E + P
Sbjct: 65 EEETADLIITGCMA-----LAQGEEFREAGVDADVLHWDDVPQAAMNGECPTVTPDTEPV 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+
Sbjct: 120 LD-------GTVGILPIARGCMSNCSYCITKFATGRIDSPSVEENVRKARALVHAGAKEL 172
Query: 242 WLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 299
++ +DTG YG D G LP LL+ I +G +R+GM NP I +E+ EV
Sbjct: 173 RITGQDTGVYGWDKGDRKLPELLDRIC---DIEGDFRVRVGMANPGGIHGIQEELVEVFA 229
Query: 300 RHPCVYSFLHVPVQSGSDAVL 320
+ +Y+F+H+PVQSGSD VL
Sbjct: 230 ANEKLYNFIHLPVQSGSDDVL 250
>gi|421076049|ref|ZP_15537051.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans JBW45]
gi|392525908|gb|EIW49032.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans JBW45]
Length = 458
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 146/303 (48%), Gaps = 30/303 (9%)
Query: 45 LSKTGSLSPKIPGTE---------TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
+SK + +IP E T Y T+GC N DSE +AGQL + GY T++ E+
Sbjct: 1 MSKPDQYNVEIPSNEMKDSNIKYFTTY--TYGCQMNHHDSERLAGQLKSIGYEYTESLED 58
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVS 148
A LINTC V+ ++ + I + K+ K + +AGC+ Q ++ K+ +
Sbjct: 59 ASFILINTCCVRESAEKKIYGKIGELKNLKVSNPNLIIAIAGCMAQKDKEKLFKKAPHID 118
Query: 149 -IVGVQQIDRVVEVVE--ETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGA 205
I+G + ++VE+V+ E K + + + + A D+P +RR K +PI GC
Sbjct: 119 LIIGTHNVHQLVEIVKEFEESKDRVLAVWDQAERLAPDVPTIRRGKISAWVPIMYGCNNF 178
Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILL 263
CTYC + RG S + ++ + + DG KE+ L ++ +YG D + LL
Sbjct: 179 CTYCIVPYVRGRERSRPLHDIIEEIYQLGLDGFKEITLLGQNVNSYGNDTKEYGDFADLL 238
Query: 264 NAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
A+ T+ R+ MT+ P + K I +L + H+PVQSGSD +L +
Sbjct: 239 KAV-----DQVETIERVRYMTSHPRDIND-KVIDTILNSKKICDHFHLPVQSGSDTILKM 292
Query: 323 SQK 325
+
Sbjct: 293 MNR 295
>gi|313893403|ref|ZP_07826975.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442044|gb|EFR60464.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
taxon 158 str. F0412]
Length = 438
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 140/275 (50%), Gaps = 20/275 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL + GY T++ E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYTPTEDVETADLILLNTCAVRENAETKVYGRI 61
Query: 119 AKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K+ L V GC+ Q ++ K + IV G I + E++EE +GH
Sbjct: 62 GELMRLKRKNKNLILAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQRGHT 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNTVLPELEAKP--NGTFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLIDALDG-IP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ + + I + R + + LH+P+QSGSD +L
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRIL 269
>gi|383620560|ref|ZP_09946966.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
gi|448697917|ref|ZP_21698795.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
gi|445781283|gb|EMA32144.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
Length = 417
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 129/272 (47%), Gaps = 39/272 (14%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG E E + G R+LH ++
Sbjct: 65 SDETADLYITGCMALAQGE---------------------EFAEADVDG---RVLHWDEV 100
Query: 180 PA--------LDLPKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
P P V + V ILPI GC+ C+YC TK A G + S ++E V +
Sbjct: 101 PEAVTNGECPTTTPDVEPILDGVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEK 160
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
R ++ G KE+ ++ +DTG YG D G L + E+ DG +R+GM NP +
Sbjct: 161 ARALVHAGAKEIRITGQDTGVYGWDEGERKLHRLLERICEI--DGDFRVRVGMANPKGVH 218
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVL 320
+E+A V + +Y FLH PVQSGS+ VL
Sbjct: 219 GIREELAAVFADNEELYDFLHAPVQSGSNDVL 250
>gi|308173664|ref|YP_003920369.1| tRNA modification protein [Bacillus amyloliquefaciens DSM 7]
gi|384159316|ref|YP_005541389.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|384164249|ref|YP_005545628.1| AdoMet radical enzyme for tRNA modification [Bacillus
amyloliquefaciens LL3]
gi|384168363|ref|YP_005549741.1| (dimethylallyl)adenosine tRNA [Bacillus amyloliquefaciens XH7]
gi|385264828|ref|ZP_10042915.1| MiaB [Bacillus sp. 5B6]
gi|307606528|emb|CBI42899.1| putative conserved AdoMet radical enzyme for tRNA modification
[Bacillus amyloliquefaciens DSM 7]
gi|328553404|gb|AEB23896.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|328911804|gb|AEB63400.1| putative AdoMet radical enzyme for tRNA modification [Bacillus
amyloliquefaciens LL3]
gi|341827642|gb|AEK88893.1| (dimethylallyl)adenosine tRNA [Bacillus amyloliquefaciens XH7]
gi|385149324|gb|EIF13261.1| MiaB [Bacillus sp. 5B6]
Length = 509
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 140/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DITYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS A+L +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKM 338
>gi|407979369|ref|ZP_11160185.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
HYC-10]
gi|407413976|gb|EKF35647.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
HYC-10]
Length = 508
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NTC ++ +++ + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS AVL +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAVLKL 337
>gi|392426457|ref|YP_006467451.1| SSU ribosomal protein S12P methylthiotransferase [Desulfosporosinus
acidiphilus SJ4]
gi|391356420|gb|AFM42119.1| SSU ribosomal protein S12P methylthiotransferase [Desulfosporosinus
acidiphilus SJ4]
Length = 445
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 146/286 (51%), Gaps = 39/286 (13%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDT 116
T+ + + T GC NQ DSE MAG L A YALT+ E ADI ++NTCT + S + +++T
Sbjct: 2 TKKVAVVTLGCPKNQVDSEIMAGFL-AQNYALTEEPEAADIIVVNTCTFIDSAKEESIET 60
Query: 117 LI--------AKCKSAKKPLVVAGCV-----PQGSRDLKELEGVSIVGVQQIDRVVEVVE 163
+ AKCK+ L+ AGC+ P+ +++ EL+GV +G +D + +V+
Sbjct: 61 IFEMAGYKQSAKCKT----LIAAGCLAQRYGPELMQEIPELDGV--IGTGNVDEITTIVQ 114
Query: 164 ET-------LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG 216
+K LH + +P K ++ + + GC CTYC H RG
Sbjct: 115 AAGEKRTNLIKIGPPNFLHHELMPR----KRSTPNYLAYVKVAEGCDNFCTYCVIPHVRG 170
Query: 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDG 274
H S ES++ VR + A GVKE+ + ++DT YG+D+ + LP LL + A++ +G
Sbjct: 171 HFRSRPQESVIREVREMAAQGVKEIMVMAQDTTRYGQDLEGKLVLPQLLRQL-AQI--EG 227
Query: 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+R+ P + L I + + P + ++ +P+Q + +L
Sbjct: 228 IEWIRLMYCYPERFTDEL--IETMRQEPKICKYIDLPLQHADNKIL 271
>gi|121533678|ref|ZP_01665505.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
gi|121307669|gb|EAX48584.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
Length = 451
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 139/270 (51%), Gaps = 19/270 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T+GC N++DSE +AGQL GY+ TD E+AD+ LINTC V+ ++ + I + K
Sbjct: 22 TYGCQMNENDSERLAGQLRGLGYSSTDQIEQADLILINTCCVRESAEKKIYGKIGELKRL 81
Query: 125 KKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLL 174
K + V GC+ Q RD + V +V G + ++ ++++E + + + +
Sbjct: 82 KTVNPNLLIGVTGCLSQKDRDKIFTKAPHVDLVMGTHNVHQLTDLIKEISQSRDRVLAVW 141
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ + A D+P VR+++ +PI GC CTYC + RG S + ++ VR +
Sbjct: 142 DQAERLAPDVPTVRKSQVSAWVPIMYGCNNFCTYCIVPYVRGRERSRPLADILAEVRQLG 201
Query: 235 ADGVKEVWLSSEDTGAYGRD--IGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEH 291
+G KE+ L ++ +YG+D ++ LL A+ T+ RI MT+ P + +
Sbjct: 202 TEGFKEITLLGQNVNSYGKDGEETIDFADLLAAV-----DKVETIARIRYMTSHPRDM-N 255
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
K IA + + H+PVQSGSD VL
Sbjct: 256 AKVIAVIKHGQRICEHFHLPVQSGSDIVLQ 285
>gi|418576319|ref|ZP_13140465.1| putative 2-methylthioadenine synthetase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|379325381|gb|EHY92513.1| putative 2-methylthioadenine synthetase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 513
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 135/276 (48%), Gaps = 15/276 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +KT+GC N D+E MAG L A GY T++ AD+ LINTC ++ +++ + + I
Sbjct: 67 KTFLIKTYGCQMNAHDTEVMAGILGALGYTPTEDINHADVILINTCAIRENAENKVFSEI 126
Query: 119 AKCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL-- 166
K KK + V GC+ Q ++ LK + V I G I R+ E++EE
Sbjct: 127 GNLKHLKKEKPETVIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLS 186
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
K V + ++ +LPKVR + I GC CTYC RG S E +
Sbjct: 187 KAMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDI 246
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ VR + G KE+ L ++ AYG+DI L L ++ ++ +R ++P
Sbjct: 247 IDEVRDLARQGYKEITLLGQNVNAYGKDID-GLAYGLGDLLEDISKIDIPRVRFTTSHPW 305
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + +H+PVQSG++AVL +
Sbjct: 306 DFTDRMIEV--IANGGNIVPHVHLPVQSGNNAVLKI 339
>gi|228475022|ref|ZP_04059750.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
SK119]
gi|228271007|gb|EEK12395.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
SK119]
Length = 514
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 138/275 (50%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A Y TD+ EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S + ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G KE+ L ++ +YG+DI +L L+ ++ ++ +R ++P
Sbjct: 249 EEVRELAREGYKEITLLGQNVNSYGKDIK-DLDYGLSDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++AVL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKI 340
>gi|448320337|ref|ZP_21509824.1| MiaB-like tRNA modifying enzyme [Natronococcus amylolyticus DSM
10524]
gi|445605802|gb|ELY59717.1| MiaB-like tRNA modifying enzyme [Natronococcus amylolyticus DSM
10524]
Length = 417
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 129/263 (49%), Gaps = 21/263 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRADEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKK 178
L + GC+ QG +E + G V D V E V E
Sbjct: 65 ADETADLYITGCMALAQG----EEFAAADVDGRVLHWDEVPEAV----TNGECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKRATGKIDSPSIEENVEKARALIHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+ ++ +DTG YG D G L + + +L +G +R+GM NP + +E+A V
Sbjct: 170 KELRITGQDTGVYGWDEGERKLHRLLSEICDL--EGEFRVRVGMANPKGVHGIREELATV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGSD VL
Sbjct: 228 FAENDELYDFLHAPVQSGSDDVL 250
>gi|73662777|ref|YP_301558.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|123775346|sp|Q49X85.1|MIAB_STAS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|72495292|dbj|BAE18613.1| putative 2-methylthioadenine synthetase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 513
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 135/276 (48%), Gaps = 15/276 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +KT+GC N D+E MAG L A GY T++ AD+ LINTC ++ +++ + + I
Sbjct: 67 KTFLIKTYGCQMNAHDTEVMAGILGALGYTPTEDINHADVILINTCAIRENAENKVFSEI 126
Query: 119 AKCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL-- 166
K KK + V GC+ Q ++ LK + V I G I R+ E++EE
Sbjct: 127 GNLKHLKKEKPETVIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLS 186
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
K V + ++ +LPKVR + I GC CTYC RG S E +
Sbjct: 187 KAMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDI 246
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ VR + G KE+ L ++ AYG+DI L L ++ ++ +R ++P
Sbjct: 247 IDEVRDLARQGYKEITLLGQNVNAYGKDID-GLAYGLGDLLEDISKIDIPRVRFTTSHPW 305
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + +H+PVQSG++AVL +
Sbjct: 306 DFTDRMIEV--IANGGNIVPHVHLPVQSGNNAVLKI 339
>gi|338730816|ref|YP_004660208.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga thermarum DSM
5069]
gi|335365167|gb|AEH51112.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga thermarum DSM
5069]
Length = 433
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 147/298 (49%), Gaps = 30/298 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ----SAMDT 116
IY+KT+GC N++D+E MAG L+ G+ + D+ ++AD+ ++NTC V+ SQ SA+
Sbjct: 3 IYIKTYGCQMNENDTEIMAGILAQKGHQIVDDLDQADVVILNTCVVRQKSQDKYHSALGQ 62
Query: 117 LIAKCKSAKKPLV-VAGCVPQGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 174
L+ K K LV ++GC + +G V G + I V EV+E G +V L
Sbjct: 63 LLKMKKEGKIKLVGISGCGANLEAEQLIKDGADFVLGSRSILAVAEVLERAASGEKVIYL 122
Query: 175 HRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ LP+ R + + I GC CTYC + RG S +E ++ V+ +
Sbjct: 123 EDTICSDMSSLPRSRSSTHHAWVTIIHGCNRFCTYCIVPYTRGREKSRPMEDVLAEVKKL 182
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
GVKE+ ++ AYG+D+ G +L L+N +E+ +G + + P I +
Sbjct: 183 AESGVKEITFLGQNVDAYGKDLKDGTSLAKLINK-ASEI--EGIERIWFLTSYPTDITDE 239
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVS----------------QKIVPTKSVS 333
L I V ++P H+P+QSGS+ +L + +KIVP S+S
Sbjct: 240 L--IETVAKNPKAAKSFHIPIQSGSNRILRLMNRRYTREQFAELVEKIRKIVPQASIS 295
>gi|340354922|ref|ZP_08677618.1| tRNA-I(6)A37 modification enzyme MiaB [Sporosarcina newyorkensis
2681]
gi|339622936|gb|EGQ27447.1| tRNA-I(6)A37 modification enzyme MiaB [Sporosarcina newyorkensis
2681]
Length = 515
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 23/306 (7%)
Query: 32 KYNKNKPRLHDNHLSKTGSLSPKIPGT---ETIYMKTFGCSHNQSDSEYMAGQLSAFGYA 88
K K + HDN + + G Y++T+GC N+ D+E MAG A GY
Sbjct: 44 KRGKEEVEYHDNF-----QIEQRFKGMGQGRKFYIRTYGCQMNEHDTEVMAGIFMALGYE 98
Query: 89 LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KP---LVVAGCVPQG----SR 139
TD ++AD+ L+NTC ++ +++ + + K K +P + V GC+ Q ++
Sbjct: 99 ATDTVKDADVILLNTCAIRENAENKVFGELGHLKPLKLERPDLLIGVCGCMSQEESVVNK 158
Query: 140 DLKELEGVS-IVGVQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEIL 196
LK + V I G I R+ ++ E E + + ++ +LPKVR K +
Sbjct: 159 ILKTYDQVDMIFGTHNIHRLPHILHEAYMSKEMVIEVWSKEGDVIENLPKVRHGKIKAWV 218
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
I GC CTYC + RG S E ++ VR + A+G KE+ L ++ AYG+D
Sbjct: 219 NIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAEGYKEITLLGQNVNAYGKDFD 278
Query: 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316
++ L ++ +L +R ++P +HL E+ + + + +H+PVQSGS
Sbjct: 279 -DITYRLGDLMDDLRKIDIPRIRFTTSHPRDFDDHLIEV--LAKGGNLVDHIHLPVQSGS 335
Query: 317 DAVLSV 322
+L +
Sbjct: 336 SDMLKI 341
>gi|317050742|ref|YP_004111858.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfurispirillum
indicum S5]
gi|316945826|gb|ADU65302.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfurispirillum
indicum S5]
Length = 441
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 144/285 (50%), Gaps = 27/285 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T+ ++KT+GC N DSE + G L A GY + + +EAD+ + NTC+V+ ++ + +
Sbjct: 2 TQRAFIKTYGCQMNSGDSERIRGILVAHGYEMVSDVKEADLAIFNTCSVREKAEQKVFSD 61
Query: 118 IAKCKSAKK-----PLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
I + + K+ + + GC+PQ R+ L++ + IV GV I +++ + E +G
Sbjct: 62 IGRLRGQKERHPGFRIALCGCIPQVQREGILRKNPLIDIVFGVNNISGLMDFIAEAQQGK 121
Query: 170 EV-RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
R+ D+P R + + I GC C+YC + RG S + S++
Sbjct: 122 RTCRVEDEFFESEYDMPSQREDAMKAFVTIMNGCDNYCSYCIVPYTRGRERSRSAPSILA 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAY-GRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTN 284
+R ++ DGV+EV L ++ +Y +D V+ P LL+ +V ++P +
Sbjct: 182 EIRQLVDDGVREVTLLGQNVNSYRWQDKAGALVDFPQLLH-LVHDIPE---------LQR 231
Query: 285 PPFILEHLKEIAEVLRH----PCVYSFLHVPVQSGSDAVLSVSQK 325
F+ H K+ +E + P V +LH+P+Q+GS+ +L + +
Sbjct: 232 IRFVTSHPKDFSEAMMEAMALPRVCKYLHLPIQAGSNRILKLMNR 276
>gi|319790575|ref|YP_004152208.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
HB-1]
gi|317115077|gb|ADU97567.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
HB-1]
Length = 442
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 137/275 (49%), Gaps = 23/275 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++KTFGC N +DSE MAG L GY EEADI ++NTC+V++ + + I
Sbjct: 5 FFIKTFGCQMNVNDSEKMAGLLRDMGYEKAQTPEEADIVIVNTCSVRAKPDNKAYSFIGN 64
Query: 121 CKSAKKP-----LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLK-GHEVR 172
K KK + VAGCVPQ ++ + V +V G ++ +++E + G V
Sbjct: 65 LKRLKKRRPDLVVAVAGCVPQKEKEQILRFPHVDLVFGTFNFVKLPQLLERVKREGRVVE 124
Query: 173 LLHRK-----KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+L+RK KLP +D N F+ + + GC CTYC RG S +V
Sbjct: 125 ILNRKIPEEEKLPLVD--SYLENPFIAYVTVQRGCNRFCTYCIVPFTRGRERSVAPHLVV 182
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V+ + GVKEV L ++ YG G +L LL +V+E+ +G +R ++P
Sbjct: 183 EEVKRLAERGVKEVHLLGQNVDFYGYQ-GTDLADLL-YMVSEV--EGVERVRFTTSHPAG 238
Query: 288 ILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLS 321
E IA +R P V ++H+P QSGS+ VL
Sbjct: 239 FSER---IARAIRDIPKVCPYVHLPPQSGSNRVLE 270
>gi|423395928|ref|ZP_17373129.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-1]
gi|423406803|ref|ZP_17383952.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-3]
gi|401653670|gb|EJS71214.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-1]
gi|401660093|gb|EJS77576.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-3]
Length = 509
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|418620502|ref|ZP_13183306.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
VCU122]
gi|374822632|gb|EHR86652.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
VCU122]
Length = 514
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A Y TD+ EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S + ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G KE+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 EEVRELAREGYKEITLLGQNVNSYGKDIK-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++AVL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKI 340
>gi|212639354|ref|YP_002315874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus WK1]
gi|229890441|sp|B7GJM6.1|MIAB_ANOFW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|212560834|gb|ACJ33889.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
Length = 527
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 136/274 (49%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 86 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 145
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q ++ LK+ + V I G I R+ +++E E
Sbjct: 146 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKEAYMSKE 205
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 206 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 265
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 266 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 324
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS VL +
Sbjct: 325 DDRLIEV--LAKGGNLVEHIHLPVQSGSSEVLKM 356
>gi|402556105|ref|YP_006597376.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus FRI-35]
gi|401797315|gb|AFQ11174.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus FRI-35]
Length = 509
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>gi|383191047|ref|YP_005201175.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371589305|gb|AEX53035.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rahnella aquatilis CIP 78.65 = ATCC 33071]
Length = 492
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 147/297 (49%), Gaps = 34/297 (11%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSP 109
LS T+ +++KT+GC N+ DS MA L S GY LTDN+EEADI L+NTC+++
Sbjct: 13 LSTDTLMTKKLHIKTWGCQMNEYDSSKMADLLDSTHGYQLTDNAEEADILLLNTCSIREK 72
Query: 110 SQSAMDTLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEV 161
+Q + +L+ K KK + V GCV +G K V IV G Q + R+ E+
Sbjct: 73 AQEKVFSLLGHWKLLKKKNPNIIIGVGGCVASQEGEMLRKRAPCVDIVFGPQTLHRLPEM 132
Query: 162 VEET---------LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTK 212
V + E+ R P D P FV I+ GC C++C
Sbjct: 133 VNHVRGTKSPVVDISFPEIEKFDRLPEPRADGP----TAFVSIME---GCNKYCSFCVVP 185
Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAE 269
+ RG S + ++ V + A GV+EV L ++ AY D GV L +VA
Sbjct: 186 YTRGEEVSRPCDDVLFEVAQLAAQGVREVNLLGQNVNAYRGEAFDGGVCTFAELLRLVAA 245
Query: 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+ DG +R ++P +E +I EV + P V SFLH+P+QSGSD +L++ ++
Sbjct: 246 I--DGIDRIRFTTSHP---VEFTDDIIEVYKDTPEVVSFLHLPIQSGSDRILTMMKR 297
>gi|423604599|ref|ZP_17580492.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD102]
gi|401245219|gb|EJR51577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD102]
Length = 509
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>gi|42782856|ref|NP_980103.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus ATCC 10987]
gi|81409496|sp|Q732V4.1|MIAB_BACC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|42738783|gb|AAS42711.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
Length = 509
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>gi|206977875|ref|ZP_03238763.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
gi|217961193|ref|YP_002339761.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus AH187]
gi|222097218|ref|YP_002531275.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus Q1]
gi|229140413|ref|ZP_04268968.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
gi|229197883|ref|ZP_04324599.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
gi|375285694|ref|YP_005106133.1| hypothetical protein BCN_3600 [Bacillus cereus NC7401]
gi|384181582|ref|YP_005567344.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|423353474|ref|ZP_17331101.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus IS075]
gi|423374431|ref|ZP_17351769.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus AND1407]
gi|423567333|ref|ZP_17543580.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A12]
gi|423574621|ref|ZP_17550740.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-D12]
gi|229890422|sp|B7HLA6.1|MIAB_BACC7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|206743875|gb|EDZ55294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
gi|217064945|gb|ACJ79195.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH187]
gi|221241276|gb|ACM13986.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|228585601|gb|EEK43703.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
gi|228642974|gb|EEK99250.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
gi|324327666|gb|ADY22926.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|358354221|dbj|BAL19393.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401089287|gb|EJP97458.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus IS075]
gi|401094343|gb|EJQ02425.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus AND1407]
gi|401212146|gb|EJR18892.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-D12]
gi|401214421|gb|EJR21151.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A12]
Length = 509
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>gi|433445654|ref|ZP_20409960.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus TNO-09.006]
gi|432000930|gb|ELK21818.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus TNO-09.006]
Length = 526
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 136/274 (49%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 85 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 144
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q ++ LK+ + V I G I R+ +++E E
Sbjct: 145 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKEAYMSKE 204
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 205 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 264
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 265 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 323
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS VL +
Sbjct: 324 DDRLIEV--LAKGGNLVEHIHLPVQSGSSEVLKM 355
>gi|423401401|ref|ZP_17378574.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-2]
gi|423477894|ref|ZP_17454609.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-1]
gi|401654391|gb|EJS71934.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-2]
gi|402428819|gb|EJV60911.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-1]
Length = 509
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTEMLKI 338
>gi|358067398|ref|ZP_09153877.1| hypothetical protein HMPREF9333_00758 [Johnsonella ignava ATCC
51276]
gi|356694314|gb|EHI55976.1| hypothetical protein HMPREF9333_00758 [Johnsonella ignava ATCC
51276]
Length = 485
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 137/280 (48%), Gaps = 27/280 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N DSE +AG LS GYA +N E +D+ + NTCTV+ + + + K K
Sbjct: 55 TFGCQMNARDSEKLAGILSNIGYAEGENEETSDLVIFNTCTVRENANDRLYGRLGKLKKQ 114
Query: 125 KK-----PLVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE--VR 172
K + + GC+ Q +++++ I G I ++ E++ L G + V
Sbjct: 115 KSLNNDMLIGICGCMMQEKDEVEKIVKSYRYVDMIFGTHNIYKLAEILYNRLHGRKRVVD 174
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+++ + LP R KF + I GC C++C + RG S E +V +++
Sbjct: 175 IINGTDMIVEKLPSKRVYKFKSGVNIMFGCNNFCSFCIVPYVRGRERSRQPEDIVAEIKS 234
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ DGV EV L ++ +YGR +G N+ L A++AE+ G+ F+ H
Sbjct: 235 LVEDGVVEVMLLGQNVNSYGRGLGRNISFAGLLAMIAEIE---------GLKRIRFMTPH 285
Query: 292 LKEIAE-----VLRHPCVYSFLHVPVQSGSDAVLSVSQKI 326
K++++ + +P + +H+P+QSGS VL +I
Sbjct: 286 PKDLSDDVIKVMKNNPKICRHIHLPLQSGSSKVLKNMNRI 325
>gi|314936546|ref|ZP_07843893.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
subsp. hominis C80]
gi|313655165|gb|EFS18910.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
subsp. hominis C80]
Length = 514
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A Y TD+ EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S + ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G KE+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 EEVRELAREGYKEITLLGQNVNSYGKDIK-DLDYGLGDLLEDISNIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++AVL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKI 340
>gi|313888926|ref|ZP_07822586.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845099|gb|EFR32500.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 432
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 133/276 (48%), Gaps = 24/276 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T + T GC NQ +SE M+ + GY +N + +D++++NTCTV + S I
Sbjct: 3 KTFSILTLGCKVNQYESEAMSELFESRGYRQVENDDFSDVYIVNTCTVTNLSDRKSRQFI 62
Query: 119 AKCKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 174
K K VVA GC Q S ++K +EGV +V G +R+V+++EE+ K +E
Sbjct: 63 RKSKKNNPNSVVAVVGCYSQVSPEEVKSIEGVDVVVGTTDRNRIVDLIEESKKNNE---- 118
Query: 175 HRKKLPALDLPKVRR----------NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
K DL VR N+ + + GC CTYC ARG + S T+E
Sbjct: 119 --KINIVKDLKNVREFANTTNFDSNNRTRAYMKVQDGCNRFCTYCIIPFARGPIRSRTIE 176
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
V RT+ G KE+ L+ G++G D+G I L +AE+ DG +R+
Sbjct: 177 DSVREARTLADRGFKEIVLTGIHIGSFGMDLGDMRLIDLIEAIAEV--DGIERIRLSSVE 234
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P I + E A C + H+ +QSGS+ +L
Sbjct: 235 PIIITDDFMERAVKTGKLCDH--FHLSLQSGSNNIL 268
>gi|157692385|ref|YP_001486847.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
pumilus SAFR-032]
gi|229890424|sp|A8FDH0.1|MIAB_BACP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157681143|gb|ABV62287.1| tRNA 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
Length = 508
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NTC ++ +++ + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +VL +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKL 337
>gi|443478976|ref|ZP_21068653.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena biceps PCC
7429]
gi|443015642|gb|ELS30506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena biceps PCC
7429]
Length = 453
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 138/279 (49%), Gaps = 26/279 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY T+ SEEAD+ L NTC+++ ++ + + + +
Sbjct: 10 HIVTFGCQMNKADSERMAGVLEDMGYHSTEESEEADLILYNTCSIRDNAEQKVYSYLGRQ 69
Query: 122 KSAKK-----PLVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K+ LVVAGCV Q R + EL+ V +G Q ++R+ ++E+ G++V
Sbjct: 70 AKRKRDNPNLTLVVAGCVAQQEGEALLRRVPELDLV--MGPQHVNRLGHLLEQVFNGNQV 127
Query: 172 RLLHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ D+ RRN V + I GC CTYC RG S T ES+ +
Sbjct: 128 AATEEAYIEE-DITTPRRNSSVAAWVNIIYGCNENCTYCIVPSVRGREQSRTPESIRQEI 186
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAIVAELPP-DGSTMLRIGM 282
+ A G KE+ L ++ AYGRD+ GV I ++ + +G +R
Sbjct: 187 EKLAAQGYKEITLLGQNIDAYGRDLPAGGIGAGVGGKITFTDLLYYVHDIEGIDRIRYAT 246
Query: 283 TNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + L K AE+ P + H+P QSG + +L
Sbjct: 247 SHPRYFSSRLIKACAEL---PKICEHFHIPFQSGDNDIL 282
>gi|47568277|ref|ZP_00238980.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
gi|47555105|gb|EAL13453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
Length = 509
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>gi|196034172|ref|ZP_03101582.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
gi|196044479|ref|ZP_03111714.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
gi|218904900|ref|YP_002452734.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus AH820]
gi|228916410|ref|ZP_04079977.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928822|ref|ZP_04091854.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935069|ref|ZP_04097899.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947493|ref|ZP_04109783.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229123286|ref|ZP_04252490.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
gi|229186011|ref|ZP_04313181.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
gi|301055262|ref|YP_003793473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
anthracis str. CI]
gi|376267665|ref|YP_005120377.1| tRNA-i(6)A37 methylthiotransferase [Bacillus cereus F837/76]
gi|423550478|ref|ZP_17526805.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus ISP3191]
gi|229890419|sp|B7JJ50.1|MIAB_BACC0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229890697|sp|A0RHE4.2|MIAB_BACAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|195993246|gb|EDX57204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
gi|196024514|gb|EDX63186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
gi|218534759|gb|ACK87157.1| conserved hypothetical protein [Bacillus cereus AH820]
gi|228597430|gb|EEK55080.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
gi|228660062|gb|EEL15698.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
gi|228812013|gb|EEM58344.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824639|gb|EEM70441.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830629|gb|EEM76234.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843213|gb|EEM88294.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300377431|gb|ADK06335.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
anthracis str. CI]
gi|364513465|gb|AEW56864.1| tRNA-i(6)A37 methylthiotransferase [Bacillus cereus F837/76]
gi|401190094|gb|EJQ97144.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus ISP3191]
Length = 509
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>gi|389573169|ref|ZP_10163244.1| tRNA 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
gi|388426866|gb|EIL84676.1| tRNA 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
Length = 508
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NTC ++ +++ + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +VL +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKL 337
>gi|65321098|ref|ZP_00394057.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
A2012]
Length = 524
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 83 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 142
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 143 LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 202
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 203 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 262
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 263 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 321
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 322 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 353
>gi|30263778|ref|NP_846155.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. Ames]
gi|47529199|ref|YP_020548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. 'Ames Ancestor']
gi|49186622|ref|YP_029874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. Sterne]
gi|165872391|ref|ZP_02217026.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167635860|ref|ZP_02394169.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|167639855|ref|ZP_02398124.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170687836|ref|ZP_02879050.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|170706889|ref|ZP_02897347.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177652051|ref|ZP_02934597.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190568422|ref|ZP_03021329.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|227813320|ref|YP_002813329.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. CDC 684]
gi|229602893|ref|YP_002868014.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. A0248]
gi|254683519|ref|ZP_05147379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
CNEVA-9066]
gi|254722040|ref|ZP_05183829.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
A1055]
gi|254735812|ref|ZP_05193518.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Western North America USA6153]
gi|254739662|ref|ZP_05197356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Kruger B]
gi|254751058|ref|ZP_05203097.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Vollum]
gi|254759376|ref|ZP_05211401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Australia 94]
gi|386737595|ref|YP_006210776.1| TRNA 2-methylthioadenosine synthase [Bacillus anthracis str. H9401]
gi|421639527|ref|ZP_16080118.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. BF1]
gi|81583703|sp|Q81WR0.1|MIAB_BACAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|30258422|gb|AAP27641.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|47504347|gb|AAT33023.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49180549|gb|AAT55925.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|164711829|gb|EDR17371.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167512256|gb|EDR87633.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|167528817|gb|EDR91575.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170128307|gb|EDS97176.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|170668152|gb|EDT18901.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|172082420|gb|EDT67485.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190560426|gb|EDV14404.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|227004716|gb|ACP14459.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
CDC 684]
gi|229267301|gb|ACQ48938.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
A0248]
gi|384387447|gb|AFH85108.1| TRNA 2-methylthioadenosine synthase [Bacillus anthracis str. H9401]
gi|403393192|gb|EJY90437.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. BF1]
Length = 509
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>gi|421507314|ref|ZP_15954234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. UR-1]
gi|401822448|gb|EJT21598.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. UR-1]
Length = 455
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 14 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 73
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 74 LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 133
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 134 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 193
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 194 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 252
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 253 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 284
>gi|229018968|ref|ZP_04175810.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
gi|228742296|gb|EEL92454.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
Length = 509
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTEMLKI 338
>gi|22298858|ref|NP_682105.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Thermosynechococcus elongatus BP-1]
gi|81743104|sp|Q8DJB2.1|MIAB_THEEB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|22295039|dbj|BAC08867.1| tlr1315 [Thermosynechococcus elongatus BP-1]
Length = 450
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 134/276 (48%), Gaps = 22/276 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ TFGC N++DSE MAG L A G L +EAD+ L NTCT++ ++ + + + +
Sbjct: 6 YITTFGCQMNKADSERMAGILEAMGLELAAEPDEADVLLYNTCTIRDNAEQKLYSYLGRQ 65
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G + L+ + V +V G Q +R+ E++E+ G +V
Sbjct: 66 AKRKHQDPNLTLIVAGCVAQQEGEQLLRRVPEVDLVMGPQYANRLGELLEQVWNGSQVVA 125
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ D+ K RR+ V +NV GC CTYC RG S E++ +
Sbjct: 126 TEPLQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPGVRGQEQSRRPEAIRAEIE 183
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ A G KEV L ++ AYGRD+ G + + G +R ++P
Sbjct: 184 ELAAQGYKEVTLLGQNIDAYGRDLPGITPEGRRQHTFTDLLYYIHDVAGIERIRFATSHP 243
Query: 286 PFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ E L + AE+ P V H+P QSG + +L
Sbjct: 244 RYFTERLIRACAEL---PKVCKHFHIPFQSGDNEIL 276
>gi|322833884|ref|YP_004213911.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rahnella sp. Y9602]
gi|384259064|ref|YP_005402998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rahnella aquatilis HX2]
gi|321169085|gb|ADW74784.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rahnella sp. Y9602]
gi|380755040|gb|AFE59431.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rahnella aquatilis HX2]
Length = 474
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 145/290 (50%), Gaps = 34/290 (11%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LTDN+EEADI L+NTC+++ +Q + +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDSTHGYQLTDNAEEADILLLNTCSIREKAQEKVFS 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEET--- 165
L+ K KK + V GCV +G K V IV G Q + R+ E+V
Sbjct: 62 LLGHWKLLKKKNPNIIIGVGGCVASQEGEMLRKRAPCVDIVFGPQTLHRLPEMVNHVRGT 121
Query: 166 ------LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+ E+ R P D P FV I+ GC C++C + RG
Sbjct: 122 KSPVVDISFPEIEKFDRLPEPRADGP----TAFVSIME---GCNKYCSFCVVPYTRGEEV 174
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGST 276
S + ++ V + A GV+EV L ++ AY D GV L +VA + DG
Sbjct: 175 SRPCDDVLFEVAQLAAQGVREVNLLGQNVNAYRGDAFEGGVCTFAELLRLVAAI--DGID 232
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+R ++P +E +I EV + P V SFLH+P+QSGSD +L++ ++
Sbjct: 233 RIRFTTSHP---VEFTDDIIEVYKDTPEVVSFLHLPIQSGSDRILTMMKR 279
>gi|239617912|ref|YP_002941234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Kosmotoga
olearia TBF 19.5.1]
gi|239506743|gb|ACR80230.1| RNA modification enzyme, MiaB family [Kosmotoga olearia TBF 19.5.1]
Length = 440
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 136/283 (48%), Gaps = 41/283 (14%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I +TFGC N +D+E MAG L + GY + DN EEAD+ ++NTC V+ ++ + + +
Sbjct: 3 IAFRTFGCQMNVNDTETMAGILKSNGYVIVDNEEEADVVIVNTCAVREKAEKKLYGKLGR 62
Query: 121 CKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHE-VR 172
+S KK + V+GCV + ++ LK E + G + I RV E +E +KG V
Sbjct: 63 LRSLKKKNRNLIIGVSGCVAEKEKEALLKREEVNFVFGTRSISRVNEFLERAIKGERFVE 122
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L P++R ++ + I GC C+YC + RG S ++E ++ V+
Sbjct: 123 LSDFIDEINSSTPRLRTSRHHAWVTIIYGCNKFCSYCIVPYTRGREKSRSMEDILNEVKR 182
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ + G +EV ++ +YG+D+ DGST+ + + +E +
Sbjct: 183 LASKGYREVTYLGQNVDSYGKDLA----------------DGSTLAK--LIRETLKIEQI 224
Query: 293 KEIAEVLRHPCVYS---------------FLHVPVQSGSDAVL 320
+ I + +P +S +H+P+QSGS+ +L
Sbjct: 225 ERIWYLTSYPKDFSDELIDVIATSKRVSRSIHLPIQSGSNRIL 267
>gi|229031402|ref|ZP_04187403.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271]
gi|228729897|gb|EEL80876.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271]
Length = 509
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 142/278 (51%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ ++ H +H+PVQSGS +L +
Sbjct: 307 DDHLIEVLGKGGNLVEH------IHLPVQSGSTEMLKI 338
>gi|118478993|ref|YP_896144.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis str. Al Hakam]
gi|118418218|gb|ABK86637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus thuringiensis
str. Al Hakam]
Length = 524
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 83 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 142
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 143 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 202
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 203 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 262
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 263 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 321
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 322 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 353
>gi|449020016|dbj|BAM83418.1| 2-methylthioadenine synthetase [Cyanidioschyzon merolae strain 10D]
Length = 707
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 152/299 (50%), Gaps = 36/299 (12%)
Query: 47 KTGSLSPKI-----PGTET---IY-MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEAD 97
++G L P++ P + T +Y ++TFGC N +DSE MAG+L GY T + EAD
Sbjct: 243 RSGELVPQLYARENPNSRTRRRLYNVQTFGCQMNLADSERMAGELERCGYRHTPDPYEAD 302
Query: 98 IWLINTCTVKSPSQSAMDTLIA---KCKSAKKP---LVVAGCVPQ--GSRDLKELEGVSI 149
+ L+NTC+++ ++ + + + + K P L+VAGCV Q G + L+ + + +
Sbjct: 303 LILLNTCSIRDHAEQKVYSFLGPFVRMKEKSNPGLKLIVAGCVAQQEGVKMLRRIPALDL 362
Query: 150 V-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFV-EILPINVGCLGACT 207
V G Q +R+ +++E+ G++V + D+ K RR V + I+ GC CT
Sbjct: 363 VMGPQYANRLADLLEDVENGNQVVATEPIHI-MEDISKPRRQSQVCAWVNISYGCNERCT 421
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNA 265
YC + RG S +VES+V V + +G +EV L ++ AYGRD+ V LL
Sbjct: 422 YCVVPYTRGLEQSRSVESIVNEVVQLKNEGYREVTLLGQNIDAYGRDMRPRVTFAQLLRH 481
Query: 266 IVAELPPDGSTMLRIGMTNP----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ A G +R +P P +++ E+ P + + H+P Q+G D VL
Sbjct: 482 VSA----TGIDRIRAITAHPRYWSPRVIQATAEL------PNIMPYFHIPFQAGDDEVL 530
>gi|430750241|ref|YP_007213149.1| ribosomal protein S12 methylthiotransferase RimO [Thermobacillus
composti KWC4]
gi|430734206|gb|AGA58151.1| ribosomal protein S12 methylthiotransferase RimO [Thermobacillus
composti KWC4]
Length = 442
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 146/278 (52%), Gaps = 25/278 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTL 117
E + + T GC N DSE M+G + GY L D E+A + ++NTC + + + +++T+
Sbjct: 3 EKVSVVTLGCDKNLVDSEIMSGLVLERGYELVDRPEDATVVIVNTCGFIDAAKEESVNTI 62
Query: 118 I--AKCKSAK--KPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
+ A+ K K L+V+GC+ Q ++ +KE+ + IVG + ++V + L G +
Sbjct: 63 LELAELKETGRLKALIVSGCLTQRYKEELMKEMPEIDGIVGTGDFHHIADIVADALGGKK 122
Query: 171 -VRLLHRKKLPALD----LPK-VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
VR+ H PA D LP+ V ++ + I GC ACT+C RG S ++E
Sbjct: 123 PVRVGH----PAFDYDQALPRRVMTPRYTAYVKIAEGCDNACTFCSIPLMRGKFRSRSIE 178
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGM 282
S+V V ++ A GVKE+ L ++D+ YG D+ LP LLN V+E+ +G +R+
Sbjct: 179 SIVREVESLAAQGVKEICLIAQDSTNYGTDLYGTFKLPELLNR-VSEV--EGIAWVRLHY 235
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P F + L I +P + ++ +P+Q D +L
Sbjct: 236 AYPGFFTDEL--IETFASNPKICNYFDIPLQHSEDLIL 271
>gi|228986916|ref|ZP_04147043.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229157351|ref|ZP_04285429.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
gi|228626078|gb|EEK82827.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
gi|228772865|gb|EEM21304.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 509
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|228959979|ref|ZP_04121644.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423628853|ref|ZP_17604602.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD154]
gi|228799722|gb|EEM46674.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401268398|gb|EJR74446.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD154]
Length = 509
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|229151973|ref|ZP_04280169.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
gi|228631528|gb|EEK88161.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
Length = 509
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|88603600|ref|YP_503778.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
gi|88189062|gb|ABD42059.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
Length = 428
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I ++TFGC++N DS+ +A L+A G + + E A++ +INTC V + ++ M I+
Sbjct: 31 ICIRTFGCAYNVGDSDLLASVLTASGSVIVSDPELAEVMIINTCIVIASTERKMLKEISS 90
Query: 121 CKSAKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ + V GC+P L+E V ++ I R V KG
Sbjct: 91 YPDHE--VYVTGCLPLALPESLQEHTTVKLIHPDSIHRAAATVSYDQKGP---------- 138
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
V ++ I GC+G+C YC T+ ARG + S + + + + + G
Sbjct: 139 -------------VSVVQIGPGCVGSCRYCITRCARGSIRSNSPHQIYSHIASCVRGGAV 185
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ L+ +D AYG D G +L LL I A LP T +R+GM NP + + +A
Sbjct: 186 EIRLAGQDLSAYGHDTGQWSLATLLEGIPA-LP--DITRIRLGMMNPATLKPIAQRVART 242
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSV 322
+ + +SFLH+P+QSGSD VL +
Sbjct: 243 MNNGPFFSFLHLPIQSGSDHVLDL 266
>gi|229162708|ref|ZP_04290665.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
gi|228620590|gb|EEK77459.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
Length = 509
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|229174437|ref|ZP_04301969.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
gi|228608997|gb|EEK66287.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
Length = 509
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 142/278 (51%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ ++ H +H+PVQSGS +L +
Sbjct: 307 DDHLIEVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>gi|423649637|ref|ZP_17625207.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD169]
gi|401282917|gb|EJR88814.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD169]
Length = 509
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|423418319|ref|ZP_17395408.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-1]
gi|401106592|gb|EJQ14553.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-1]
Length = 509
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTDMLKI 338
>gi|194014848|ref|ZP_03053465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
7061]
gi|194013874|gb|EDW23439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
7061]
Length = 508
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 141/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NTC ++ +++ + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ L V GC+ Q R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVKRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +VL +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKL 337
>gi|218234533|ref|YP_002368575.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus B4264]
gi|229890421|sp|B7HDP7.1|MIAB_BACC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218162490|gb|ACK62482.1| conserved hypothetical protein [Bacillus cereus B4264]
Length = 509
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|255659775|ref|ZP_05405184.1| RNA modification enzyme, MiaB family [Mitsuokella multacida DSM
20544]
gi|260847845|gb|EEX67852.1| RNA modification enzyme, MiaB family [Mitsuokella multacida DSM
20544]
Length = 455
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 138/274 (50%), Gaps = 29/274 (10%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI----- 118
+ GCS N D+E M G L G LT N EADI ++NTC ++S + ++ T++
Sbjct: 7 SLGCSKNLVDTEVMLGILKQHGIELTANPAEADILIVNTCAFIQSAKEESITTILNMAEY 66
Query: 119 ---AKCKSAKKPLVVAGCVPQGSRDLKEL-----EGVSIVGVQQIDRVVEVVEETLKGHE 170
+C+S L+VAGC+ G R +EL E +I+G R++E VEETLKGH
Sbjct: 67 KESGRCRS----LIVAGCL--GQRYKQELLDEIPEADAIIGTGAWGRIMEAVEETLKGHR 120
Query: 171 VRLLHRKK-LPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + + + L + P++ + + I GC C +C + RG S +E +
Sbjct: 121 VVIAGKDEALYDENTPRITTTPSYTAYVKIAEGCNNRCAFCAIPYIRGDYRSRRIEDICD 180
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
VR + +GV+EV L ++D+ YGRD+ L LL IV ++P +R + P
Sbjct: 181 EVRHLTENGVREVVLIAQDSTEYGRDLYGAPKLSELLREIV-KVPK--LQWVRTLYSYPK 237
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ + L I + P + ++ +P+Q DAVL
Sbjct: 238 YFSDEL--IETIASEPKICKYVDLPLQHAHDAVL 269
>gi|229071269|ref|ZP_04204493.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
gi|229081024|ref|ZP_04213537.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
gi|228702338|gb|EEL54811.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
gi|228711890|gb|EEL63841.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
Length = 509
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|30021864|ref|NP_833495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus ATCC 14579]
gi|81432671|sp|Q812Y0.1|MIAB_BACCR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|29897420|gb|AAP10696.1| tRNA 2-methylthioadenosine synthase [Bacillus cereus ATCC 14579]
Length = 509
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 143/278 (51%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDFLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ ++ H +H+PVQSGS +L +
Sbjct: 307 DDHLIEVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>gi|206972613|ref|ZP_03233555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
gi|229180049|ref|ZP_04307393.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
gi|229191897|ref|ZP_04318867.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
gi|365159451|ref|ZP_09355631.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
sp. 7_6_55CFAA_CT2]
gi|423412423|ref|ZP_17389543.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3O-2]
gi|423431792|ref|ZP_17408796.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4O-1]
gi|206732426|gb|EDZ49606.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
gi|228591448|gb|EEK49297.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
gi|228603258|gb|EEK60735.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
gi|363625163|gb|EHL76208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
sp. 7_6_55CFAA_CT2]
gi|401104491|gb|EJQ12468.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3O-2]
gi|401116548|gb|EJQ24386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4O-1]
Length = 509
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|423389967|ref|ZP_17367193.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-3]
gi|401640883|gb|EJS58609.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-3]
Length = 509
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTDMLKI 338
>gi|420199076|ref|ZP_14704760.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM031]
gi|394272762|gb|EJE17212.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM031]
Length = 514
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 138/275 (50%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + +EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDIDEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++ VL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKI 340
>gi|229111245|ref|ZP_04240799.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
gi|229129049|ref|ZP_04258022.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
gi|229146344|ref|ZP_04274715.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
gi|296504271|ref|YP_003665971.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
gi|423585817|ref|ZP_17561904.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD045]
gi|423641145|ref|ZP_17616763.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD166]
gi|423656633|ref|ZP_17631932.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD200]
gi|228636977|gb|EEK93436.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
gi|228654286|gb|EEL10151.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
gi|228672239|gb|EEL27529.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
gi|296325323|gb|ADH08251.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
gi|401233163|gb|EJR39659.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD045]
gi|401280206|gb|EJR86128.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD166]
gi|401290374|gb|EJR96068.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD200]
Length = 509
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|423437227|ref|ZP_17414208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X12-1]
gi|401120382|gb|EJQ28178.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X12-1]
Length = 509
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|228954049|ref|ZP_04116078.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|423425910|ref|ZP_17402941.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-2]
gi|423503549|ref|ZP_17480141.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HD73]
gi|449090716|ref|YP_007423157.1| hypothetical protein HD73_4058 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228805615|gb|EEM52205.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401110657|gb|EJQ18556.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-2]
gi|402458903|gb|EJV90643.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HD73]
gi|449024473|gb|AGE79636.1| hypothetical protein HD73_4058 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 509
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|428220347|ref|YP_007104517.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechococcus sp. PCC 7502]
gi|427993687|gb|AFY72382.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechococcus sp. PCC 7502]
Length = 453
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 139/278 (50%), Gaps = 24/278 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ T GC N++DSE MAG L GY+ TD ++EAD+ L NTC+++ ++ + + + +
Sbjct: 11 HIVTLGCQMNKADSERMAGILETMGYSSTDEADEADLVLYNTCSIRDNAEQKVYSYLGRQ 70
Query: 122 --KSAKKP---LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
+ K P LVVAGCV Q R + EL+ V +G Q ++R+ ++E+ G++V
Sbjct: 71 AKRKHKNPDLTLVVAGCVAQQEGEALLRRVPELDLV--MGPQHVNRLDHLLEQVFNGNQV 128
Query: 172 RLLHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ D+ RRN + + I GC +CTYC RG S T ++++ V
Sbjct: 129 SATESAYIEE-DITTPRRNSSITAWVNIIYGCNESCTYCIVPRVRGVEQSRTPDAILQEV 187
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAIVAELPP-DGSTMLRIGM 282
+ G KE+ L ++ AYGRD+ GV I L ++ + +G +R
Sbjct: 188 NNLSQQGYKEITLLGQNIDAYGRDLPPSNLGGGVGGKITLTDLLYYIHDVEGIERIRFAT 247
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + L + L P V H+P QSG + +L
Sbjct: 248 SHPRYFSPRLIQACAEL--PKVCEHFHIPFQSGDNEIL 283
>gi|423458045|ref|ZP_17434842.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X2-1]
gi|401148429|gb|EJQ55922.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X2-1]
Length = 509
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 142/278 (51%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ ++ H +H+PVQSGS +L +
Sbjct: 307 DDHLIEVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>gi|194476570|ref|YP_002048749.1| hypothetical protein PCC_0084 [Paulinella chromatophora]
gi|171191577|gb|ACB42539.1| hypothetical protein PCC_0084 [Paulinella chromatophora]
Length = 470
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 134/278 (48%), Gaps = 22/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++ TFGC N++DSE MAG L + GY + + EAD+ L NTCT++ ++ + + +
Sbjct: 27 TYWITTFGCQMNKADSERMAGILESIGYQIAPSEHEADLVLYNTCTIRDSAEQKVYSYLG 86
Query: 120 KCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K+ L+VAGCV Q G+ L+ + + +V G QQ +R+ ++ + G +V
Sbjct: 87 RQAQRKRTNPHIILIVAGCVAQQEGASLLRRVPEIDLVMGPQQTNRLSYLLSQVENGQQV 146
Query: 172 RLLHRKKLPALDLPKVRRNKFV-EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + D+ RR V + + GC CTYC RG S ES+ +
Sbjct: 147 -IATEESYILEDITNARRESSVCGWVNVVYGCNERCTYCVVPSVRGKEQSRLPESIKMEM 205
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GV-------NLPILLNAIVAELPPDGSTMLRIGM 282
+ G +EV L ++ AYGRD+ G+ N L V E+ G +R
Sbjct: 206 EILATQGFREVTLLGQNVDAYGRDLAGISPEGRRHNTLTALLYFVHEVK--GINRIRFAT 263
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + E L E L C + H+P QSG D VL
Sbjct: 264 SHPRYFTERLIEACSNLSKVCEH--FHIPCQSGDDEVL 299
>gi|239826699|ref|YP_002949323.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
sp. WCH70]
gi|239806992|gb|ACS24057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. WCH70]
Length = 523
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 134/274 (48%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 141
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q ++ LK+ + V I G I R+ ++ E E
Sbjct: 142 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK RR + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVIENLPKARRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS +L +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKL 352
>gi|397662316|ref|YP_006503016.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
equigenitalis ATCC 35865]
gi|394350495|gb|AFN36409.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
equigenitalis ATCC 35865]
Length = 469
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 25/287 (8%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMD 115
G + +Y+KTFGC N+ DSE MA L A G LTDN E+AD+ L+NTC+++ SQ +
Sbjct: 29 GAKKLYIKTFGCQMNEYDSEKMADVLHAEKGLELTDNPEDADVILLNTCSIREKSQEKVF 88
Query: 116 TLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
+ + + KK + V GCV +G+ L+ V I+ G Q + R+ E++E+ K
Sbjct: 89 SDLGRINLLKKKKPELLIGVGGCVASQEGATILQRAPYVDIIFGPQTLHRLPELIEQ--K 146
Query: 168 GHEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
R P ++ LP R N + I GC C+YC + RG S +
Sbjct: 147 ESSGRAQVDVSFPEIEKFDHLPPARINGPTAFVSIMEGCSKYCSYCVVPYTRGEEISRPL 206
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
E ++ V + GVKE+ L ++ AY +G + I A++ EL D + RI
Sbjct: 207 EDVLIEVADLADQGVKEINLLGQNVNAYRGTVGEDGEIADFAMLLELIHDIPGVERIR-- 264
Query: 284 NPPFILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSVSQK 325
+I H KE+ + L + P + FLH+PVQ+GSD VL+ ++
Sbjct: 265 ---YITSHPKEMTKRLIEAHAKLPKLVPFLHLPVQAGSDRVLAAMKR 308
>gi|319892314|ref|YP_004149189.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus pseudintermedius
HKU10-03]
gi|386319417|ref|YP_006015580.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
pseudintermedius ED99]
gi|317162010|gb|ADV05553.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus pseudintermedius
HKU10-03]
gi|323464588|gb|ADX76741.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
pseudintermedius ED99]
Length = 516
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY T++ AD+ L+NTC ++ +++ + I
Sbjct: 71 TFLIKTYGCQMNAHDTEVMAGILTALGYTPTEDVNTADVILLNTCAIRENAENKVFGEIG 130
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K K+ + V GC+ Q ++ LK + V I G I R+ +++EE K
Sbjct: 131 NLKHIKQERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPQILEEAYLSK 190
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR+ + + I GC CTYC RG S E ++
Sbjct: 191 AMVVEVWSKEGDVIENLPKVRQGRIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 250
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + G +E+ L ++ AYG+DI +L L ++A++ +R ++P
Sbjct: 251 EEVRDLARQGYQEITLLGQNVNAYGKDIE-DLEYGLGDLLADISKIDIPRVRFTTSHPWD 309
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + +H+PVQSG+D VL +
Sbjct: 310 FTDRMIEV--IAEGGNIVPHIHLPVQSGNDQVLKI 342
>gi|253573595|ref|ZP_04850938.1| MiaB-like tRNA modifying enzyme YliG [Paenibacillus sp. oral taxon
786 str. D14]
gi|251847123|gb|EES75128.1| MiaB-like tRNA modifying enzyme YliG [Paenibacillus sp. oral taxon
786 str. D14]
Length = 442
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 145/281 (51%), Gaps = 29/281 (10%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDT 116
TE + + T GC N DSE M+G + GY+L DN E+A + ++NTC + + + +++T
Sbjct: 2 TEKVKIVTLGCEKNLVDSEIMSGLIEQRGYSLVDNREDATVIIVNTCGFIDAAKEESVNT 61
Query: 117 LIA----KCKSAKKPLVVAGCVPQGSR-----DLKELEGVSIVGVQQIDRVVEVVEETLK 167
++ K K L+V+GC+ Q + ++ E++G IVG ++ +V+E LK
Sbjct: 62 ILELADLKESGRLKALIVSGCLTQRYKQALMEEMPEIDG--IVGTGDFHQINRIVDEALK 119
Query: 168 GHEVRLL------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
G + L+ + + LP K+ ++ + I GC CT+C RG S
Sbjct: 120 GKKPALVGNPVFNYEQALPR----KLSTARYTTYVKIAEGCDNNCTFCSIPIMRGKFRSR 175
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLR 279
++ES++ VR++ A GVKE+ L ++D+ YG D+ L L++ + +G +R
Sbjct: 176 SMESILEEVRSMAAQGVKEISLIAQDSTNYGTDLYGEFKLAELMDRVTQ---VEGVEWVR 232
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ P F + L E+ + +P + ++ +P+Q D++L
Sbjct: 233 LHYAYPGFFTDELIEM--MATNPKICKYVDMPLQHSEDSIL 271
>gi|229098241|ref|ZP_04229188.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
gi|229104336|ref|ZP_04235005.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
gi|229117258|ref|ZP_04246636.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
gi|407706177|ref|YP_006829762.1| uridylate kinase [Bacillus thuringiensis MC28]
gi|423378442|ref|ZP_17355726.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1O-2]
gi|423441498|ref|ZP_17418404.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X2-1]
gi|423448276|ref|ZP_17425155.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5O-1]
gi|423464572|ref|ZP_17441340.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-1]
gi|423533914|ref|ZP_17510332.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB2-9]
gi|423540817|ref|ZP_17517208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB4-10]
gi|423547056|ref|ZP_17523414.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB5-5]
gi|423615966|ref|ZP_17591800.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD115]
gi|423623153|ref|ZP_17598931.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD148]
gi|228666158|gb|EEL21622.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
gi|228679034|gb|EEL33242.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
gi|228685139|gb|EEL39070.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
gi|401128870|gb|EJQ36553.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5O-1]
gi|401172005|gb|EJQ79226.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB4-10]
gi|401178777|gb|EJQ85950.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB5-5]
gi|401259926|gb|EJR66100.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD148]
gi|401260503|gb|EJR66676.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD115]
gi|401635209|gb|EJS52965.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1O-2]
gi|402418159|gb|EJV50459.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X2-1]
gi|402420839|gb|EJV53110.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-1]
gi|402464133|gb|EJV95833.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB2-9]
gi|407383862|gb|AFU14363.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis MC28]
Length = 509
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|398304580|ref|ZP_10508166.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
vallismortis DV1-F-3]
Length = 509
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 139/274 (50%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DITYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL ++ + + + +H+PVQSGS VL +
Sbjct: 307 DDHLIDV--LAKGGNLLDHIHLPVQSGSSEVLKL 338
>gi|325295239|ref|YP_004281753.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065687|gb|ADY73694.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Desulfurobacterium thermolithotrophum DSM 11699]
Length = 437
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 141/277 (50%), Gaps = 28/277 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y+KTFGC N +DSE MAG L + GY TD EEAD+ ++NTC+V++ + + I
Sbjct: 4 FYIKTFGCQMNVNDSEKMAGILRSLGYEKTDLPEEADLIIVNTCSVRAKPDNKAYSFIGN 63
Query: 121 CKSAKKP-----LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K KK + V GCVPQ ++ + + V +V G ++ E+++ K V +
Sbjct: 64 LKKIKKEKPETIIAVGGCVPQKEKESILRFKHVDLVFGTFNFMKIGELIKRAKKERVVEI 123
Query: 174 LHRK-----KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
L+ K K+P +D N +V + + GC C+YC RG S E ++
Sbjct: 124 LNSKIPEEDKVPLID--SYLENPYVAYVTVQRGCNRFCSYCIVPFTRGRERSVKPELVLK 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP--- 285
V+ + GVKEV L ++ Y + G++L LL +V+E+ +G +R ++P
Sbjct: 182 EVKRLAERGVKEVHLLGQNVDFYNYE-GIDLADLL-YMVSEV--EGIERIRFTTSHPCGF 237
Query: 286 -PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
I+E +K I +V C Y +H+P QSGS +L
Sbjct: 238 NRKIVEAMKNIEKV----CPY--VHLPPQSGSTKILE 268
>gi|169349836|ref|ZP_02866774.1| hypothetical protein CLOSPI_00574 [Clostridium spiroforme DSM 1552]
gi|169293404|gb|EDS75537.1| tRNA methylthiotransferase YqeV [Clostridium spiroforme DSM 1552]
Length = 428
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 136/271 (50%), Gaps = 15/271 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+TI T GC N +S M + GY D E AD+++INTCTV + S +I
Sbjct: 2 KTIAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKEIADVYVINTCTVTNTGDSKSRQMI 61
Query: 119 AKC--KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-GHEV-- 171
K K+ + + VAGC Q +++++EGV +V G Q +V+ V+E LK G V
Sbjct: 62 RKAIRKNPQATVCVAGCYSQIAPEEIEQIEGVGVVLGTQHRKDIVKYVDEYLKTGKPVIK 121
Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+++ KK L++ + + + L I GC CTYC +ARG + S +S++ +
Sbjct: 122 VDNVMNLKKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRDKDSVLNQ 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+T++A+G E+ L+ T YG D+ N + +V + DG LRI I
Sbjct: 180 AKTLVANGYVEIVLTGIHTAGYGEDLD-NYS-FYDLLVDLVKIDGLKRLRISSIETSQIS 237
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ + I + + + LH+P+QSG DA L
Sbjct: 238 DEI--INLIGSNDIIVDHLHIPLQSGCDATL 266
>gi|226312987|ref|YP_002772881.1| hypothetical protein BBR47_34000 [Brevibacillus brevis NBRC 100599]
gi|226095935|dbj|BAH44377.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 448
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 141/283 (49%), Gaps = 18/283 (6%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSP 109
++ K+ E + + T GC N DS+ MA + GY L DN EEA + ++NTC + +
Sbjct: 1 MTEKVGTREKVAIVTLGCEKNLVDSDMMAHLIDEKGYELVDNPEEATVVIVNTCGFIDAA 60
Query: 110 SQSAMDTLIA----KCKSAKKPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVV 162
+ +++ ++ K K LVVAGC+ Q ++ L E+ V IVG + ++
Sbjct: 61 KEESVNKILEMGELKESGKLKSLVVAGCLTQRYKEDILNEIPEVDGIVGTGDFMSITGII 120
Query: 163 EETLKGHEVRLLHRKKLPALDL--PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
EE+L+G + D+ KV++ + + I GC ACT+C RG S
Sbjct: 121 EESLEGKRPIFVGNPIFTYEDVVKRKVKQGTYTAYIKIAEGCDNACTFCSIPLMRGGFRS 180
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTM 277
T+ES+V R + A GV EV L ++D+ YG DI + LP LLN + AE+ +G
Sbjct: 181 RTIESIVEEARHLAAQGVVEVSLIAQDSTNYGTDIYDGKLMLPELLNRL-AEV--EGIEW 237
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+R+ P F + L I +P V ++ +P+Q D +L
Sbjct: 238 IRLHYAYPGFFTDEL--IHTFATNPKVCKYVDMPLQHSEDHIL 278
>gi|196247551|ref|ZP_03146253.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
gi|229890686|sp|A4IMH7.2|MIAB_GEOTN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|196212335|gb|EDY07092.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
Length = 523
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 135/274 (49%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGELGY 141
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDFN-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS +L +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKM 352
>gi|365840341|ref|ZP_09381533.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaeroglobus geminatus
F0357]
gi|364561545|gb|EHM39437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaeroglobus geminatus
F0357]
Length = 448
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 135/269 (50%), Gaps = 20/269 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T+GC N SDSE AGQL GY +T+++E AD+ L+NTC V+ ++ + I + K
Sbjct: 13 TYGCQMNSSDSERYAGQLEELGYTMTEDAELADVILMNTCCVRETAEDKVLGKIGEFKHL 72
Query: 125 KKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVE--ETLKGHEVRLL 174
K + V GC+ Q R K + +V G I +++++++ E +GH +
Sbjct: 73 KARNNDLIIAVTGCMAQEWQERLFKRAPHLDLVIGTHNIHKLIDLIKEREEKRGHALATD 132
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ D+P R KF +PI GC CTYC + RG S +E +V VR +
Sbjct: 133 MDGNV-FYDIPTRRFQKFFAWVPIMNGCNKFCTYCIVPYVRGREVSRPLEEIVEEVRNLA 191
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEH 291
+G KE+ L ++ +YG D G + LL A V E+ DG +R ++P
Sbjct: 192 DEGYKEITLLGQNVNSYGLDFKDGTDFSALLYA-VEEI--DGIERVRYMTSHPKDMTFAM 248
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ IA+ + V + LH+PVQSGS +L
Sbjct: 249 VDAIAQCSK---VVTHLHLPVQSGSTELL 274
>gi|419760967|ref|ZP_14287228.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
africanus H17ap60334]
gi|407513872|gb|EKF48745.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
africanus H17ap60334]
Length = 429
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 139/271 (51%), Gaps = 23/271 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++KT+GC N++DSE L GY +N EADI ++NTC V+ ++ + I +
Sbjct: 3 FFIKTYGCQMNENDSEVARYYLEQEGYESAENENEADIVILNTCVVRKKAEDKFLSTIGE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKE---LEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ K + V GC G+ LKE GV+ ++G + I R+ E VE ++KG + +
Sbjct: 63 LRKKNKKIGVMGC---GAEKLKEDLFKRGVNFVIGTRAISRIPEAVELSIKGKKAAIFD- 118
Query: 177 KKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
KL +D + R +K + I GC CTYC + RG S +E ++ V+ +
Sbjct: 119 DKLDEIDYRNILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMEDILQEVKNLS 178
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG-MTNPP--FIL 289
+GV+E+ ++ AYG+D+ G +L LLN + + RI +T+ P F L
Sbjct: 179 LNGVREITYLGQNVDAYGKDLNDGTSLAKLLNE-----TKNIENIERIWFLTSYPTDFSL 233
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ +EIA + + +H+PVQ GS+ +L
Sbjct: 234 DIAREIASSEK---IAKSIHLPVQHGSNKIL 261
>gi|417656560|ref|ZP_12306243.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU028]
gi|329736221|gb|EGG72493.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU028]
Length = 514
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLDQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++ VL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKI 340
>gi|333980035|ref|YP_004517980.1| MiaB family RNA modification protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333823516|gb|AEG16179.1| RNA modification enzyme, MiaB family [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 445
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 138/281 (49%), Gaps = 24/281 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ + T GC NQ +S +A GY + D SE ADI++INTCTV LI
Sbjct: 13 TVAVTTLGCKVNQYESAALATLFRERGYKVVDFSEAADIYVINTCTVTHLGDRKSRQLIR 72
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE----- 170
+ + +VV GC Q S ++ + GV +VG + R+V++VEE E
Sbjct: 73 RATRNNPHARVVVTGCYAQTSPEEVLSIPGVDLVVGTRDKSRIVDLVEELESRKEGPLAV 132
Query: 171 VRLLH----RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
VR + ++LP LP ++ L I GC C YC +ARG L S E++
Sbjct: 133 VRDVFADQDYEELPVPALP----SRVRAFLKIQEGCNNFCAYCIIPYARGPLRSRDPENV 188
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTN 284
+ R ++A G KE+ L+ TGAYG+D G +L L+ + AE+P G LR+
Sbjct: 189 LAEARRLVAGGFKELVLTGIHTGAYGQDRPGGPDLAGLVECL-AEIP--GLVRLRLSSVE 245
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
P I L +I P V LH+P+QSG D VL+ ++
Sbjct: 246 PMDITGKLVDIMAT--RPNVCRHLHIPLQSGDDTVLARMRR 284
>gi|15605821|ref|NP_213198.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aquifex
aeolicus VF5]
gi|6226354|sp|O66638.1|MIAB_AQUAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2982992|gb|AAC06605.1| hypothetical protein aq_284 [Aquifex aeolicus VF5]
Length = 440
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 148/282 (52%), Gaps = 19/282 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PSQSAMDT 116
++ ++KTFGC N +DSE + G L GY TDN EEAD+ ++NTCT++ P Q +
Sbjct: 2 SKKFFIKTFGCQMNFNDSERIRGLLKTIGYEQTDNWEEADLIILNTCTIREKPDQKVLSH 61
Query: 117 L----IAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGH 169
L K K+ K + VAGC+ Q G +K+ + I+ + ++ E++ + G+
Sbjct: 62 LGEYKKIKEKNPKALIAVAGCLAQRTGWELVKKAPVIDIMFSSFNMHQLPELINQAQAGY 121
Query: 170 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+ + L + + + P R NK+ + I GC CTYC RG S + S
Sbjct: 122 KAIAILDELPQDEDKIWEYPVERDNKYCAYVTIIKGCDKNCTYCVVPRTRGKERSRALHS 181
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
++ V+ ++ DGV+E+ L ++ A+G+D PI + ++ ++ DG +R +
Sbjct: 182 ILDEVKRLVDDGVREIHLLGQNVTAWGKDF--EKPIPFSELLYQVSKIDGVERIRFTTGH 239
Query: 285 PPFILEHLKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
P + + + E +A++ P V + LH+P Q+GS+ +L++ +
Sbjct: 240 PRDLTDDIIEAMADI---PQVCNALHLPFQAGSNRILALMDR 278
>gi|49478367|ref|YP_037833.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|52141716|ref|YP_085113.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus E33L]
gi|196038441|ref|ZP_03105750.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|81395139|sp|Q6HF43.1|MIAB_BACHK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81686624|sp|Q636Q4.1|MIAB_BACCZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|49329923|gb|AAT60569.1| conserved hypothetical protein, possible tRNA 2-methylthioadenine
synthetase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|51975185|gb|AAU16735.1| conserved hypothetical protein; possible tRNA 2-methylthioadenine
synthetase [Bacillus cereus E33L]
gi|196030849|gb|EDX69447.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
Length = 509
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>gi|417908008|ref|ZP_12551775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
VCU116]
gi|341595095|gb|EGS37773.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
VCU116]
Length = 514
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 136/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY+ T + +AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 NEVRELAREGYQEITLLGQNVNSYGKDIE-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + +H+PVQSG++AVL +
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKI 340
>gi|314933472|ref|ZP_07840837.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae
C87]
gi|313653622|gb|EFS17379.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae
C87]
Length = 514
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 136/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY+ T + +AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 NEVRELAREGYQEITLLGQNVNSYGKDIE-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + +H+PVQSG++AVL +
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKI 340
>gi|384265286|ref|YP_005420993.1| (Dimethylallyl)adenosine tRNA methylthiotransferase ymcB [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387898282|ref|YP_006328578.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens Y2]
gi|380498639|emb|CCG49677.1| (Dimethylallyl)adenosine tRNA methylthiotransferase ymcB [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387172392|gb|AFJ61853.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens Y2]
Length = 509
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 139/274 (50%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFD-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS A+L +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSAMLKM 338
>gi|223044509|ref|ZP_03614536.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
SK14]
gi|222442106|gb|EEE48224.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
SK14]
Length = 514
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 136/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY+ T + +AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 NEVRELAREGYQEITLLGQNVNSYGKDIE-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + +H+PVQSG++AVL +
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKI 340
>gi|435845798|ref|YP_007308048.1| MiaB-like tRNA modifying enzyme [Natronococcus occultus SP4]
gi|433672066|gb|AGB36258.1| MiaB-like tRNA modifying enzyme [Natronococcus occultus SP4]
Length = 420
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 126/263 (47%), Gaps = 21/263 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKK 178
L + GC+ QG +E + G V D V E V E
Sbjct: 65 ADETADLYITGCMALAQG----EEFAAADVDGRVLHWDEVPEAV----TNGECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +E V + ++ G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKRATGKIDSPPIEENVRKAEALLHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+ ++ +DTG YG D G L + EL +G +R+GM NP + +E+A V
Sbjct: 170 KEIRITGQDTGVYGWDEGERKLHRLLEEICEL--EGEFRVRVGMANPKGVHGIREELASV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH PVQSGSD VL
Sbjct: 228 FAEYDELYDFLHAPVQSGSDDVL 250
>gi|312111583|ref|YP_003989899.1| MiaB family RNA modification protein [Geobacillus sp. Y4.1MC1]
gi|336235965|ref|YP_004588581.1| MiaB family RNA modification protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|423720511|ref|ZP_17694693.1| RNA modification protein, miaB family [Geobacillus
thermoglucosidans TNO-09.020]
gi|311216684|gb|ADP75288.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
gi|335362820|gb|AEH48500.1| RNA modification enzyme, MiaB family [Geobacillus
thermoglucosidasius C56-YS93]
gi|383366566|gb|EID43856.1| RNA modification protein, miaB family [Geobacillus
thermoglucosidans TNO-09.020]
Length = 523
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 133/274 (48%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMELGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 141
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q ++ LK+ + V I G I R+ ++ E E
Sbjct: 142 LKQLKQDNPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPHILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK R+ + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVIENLPKARKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KEV L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRHLAAQGYKEVTLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS +L +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKL 352
>gi|418325516|ref|ZP_12936722.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU071]
gi|365228118|gb|EHM69303.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU071]
Length = 514
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++ VL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKI 340
>gi|418411712|ref|ZP_12984978.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus epidermidis BVS058A4]
gi|410891295|gb|EKS39092.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus epidermidis BVS058A4]
Length = 514
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++ VL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKI 340
>gi|138894823|ref|YP_001125276.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
thermodenitrificans NG80-2]
gi|134266336|gb|ABO66531.1| tRNA 2-methylthioadenosine synthase [Geobacillus
thermodenitrificans NG80-2]
Length = 580
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 135/274 (49%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + +
Sbjct: 139 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGELGY 198
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 199 LKPLKTTNPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 258
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 259 MVVEVWSKEGDVVENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 318
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 319 EVRQLAAQGYKEITLLGQNVNAYGKDFN-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 377
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS +L +
Sbjct: 378 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKM 409
>gi|27467889|ref|NP_764526.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
epidermidis ATCC 12228]
gi|57866805|ref|YP_188442.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
epidermidis RP62A]
gi|251810724|ref|ZP_04825197.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876275|ref|ZP_06285142.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis SK135]
gi|293366743|ref|ZP_06613419.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646301|ref|ZP_12296162.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU144]
gi|417658991|ref|ZP_12308604.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU045]
gi|417909904|ref|ZP_12553637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU037]
gi|417910848|ref|ZP_12554564.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU105]
gi|417913346|ref|ZP_12557013.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU109]
gi|418605439|ref|ZP_13168764.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU041]
gi|418607743|ref|ZP_13170966.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU057]
gi|418609881|ref|ZP_13173015.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU065]
gi|418612172|ref|ZP_13175218.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU117]
gi|418616672|ref|ZP_13179596.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU120]
gi|418622040|ref|ZP_13184796.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU123]
gi|418624502|ref|ZP_13187177.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU125]
gi|418626753|ref|ZP_13189349.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU126]
gi|418628490|ref|ZP_13191035.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU127]
gi|418664683|ref|ZP_13226149.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU081]
gi|419768123|ref|ZP_14294260.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-250]
gi|419770912|ref|ZP_14296974.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-K]
gi|420163370|ref|ZP_14670117.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM095]
gi|420165173|ref|ZP_14671877.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM088]
gi|420167650|ref|ZP_14674302.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM087]
gi|420172708|ref|ZP_14679206.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM067]
gi|420182962|ref|ZP_14689095.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM049]
gi|420193970|ref|ZP_14699799.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM021]
gi|420197182|ref|ZP_14702906.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM020]
gi|420201994|ref|ZP_14707589.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM018]
gi|420214227|ref|ZP_14719506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05005]
gi|420216059|ref|ZP_14721281.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05001]
gi|420218841|ref|ZP_14723891.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH04008]
gi|420221916|ref|ZP_14726841.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH08001]
gi|420224778|ref|ZP_14729616.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH06004]
gi|420227083|ref|ZP_14731856.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05003]
gi|420229406|ref|ZP_14734112.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH04003]
gi|420231764|ref|ZP_14736409.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH051668]
gi|420234452|ref|ZP_14739015.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH051475]
gi|421607205|ref|ZP_16048451.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
epidermidis AU12-03]
gi|81674874|sp|Q5HPP8.1|MIAB_STAEQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81843816|sp|Q8CSS3.1|MIAB_STAES RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|27315434|gb|AAO04568.1|AE016747_65 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637463|gb|AAW54251.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
RP62A]
gi|251805884|gb|EES58541.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295300|gb|EFA87827.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis SK135]
gi|291319044|gb|EFE59414.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329728030|gb|EGG64474.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU144]
gi|329736630|gb|EGG72896.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU045]
gi|341652513|gb|EGS76301.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU037]
gi|341655036|gb|EGS78772.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU105]
gi|341655628|gb|EGS79352.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU109]
gi|374402536|gb|EHQ73561.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU041]
gi|374403860|gb|EHQ74855.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU057]
gi|374406217|gb|EHQ77120.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU065]
gi|374410129|gb|EHQ80890.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU081]
gi|374820054|gb|EHR84168.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU117]
gi|374820750|gb|EHR84826.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU120]
gi|374827415|gb|EHR91277.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU123]
gi|374827731|gb|EHR91592.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU125]
gi|374831297|gb|EHR95039.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU126]
gi|374837336|gb|EHS00902.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU127]
gi|383361044|gb|EID38427.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-250]
gi|383362461|gb|EID39813.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-K]
gi|394235059|gb|EJD80633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM095]
gi|394236340|gb|EJD81874.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM088]
gi|394237678|gb|EJD83164.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM087]
gi|394241385|gb|EJD86799.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM067]
gi|394249425|gb|EJD94638.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM049]
gi|394265989|gb|EJE10635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM020]
gi|394266668|gb|EJE11293.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM021]
gi|394269967|gb|EJE14490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM018]
gi|394283592|gb|EJE27757.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05005]
gi|394289947|gb|EJE33817.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH08001]
gi|394291586|gb|EJE35384.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH04008]
gi|394292509|gb|EJE36251.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05001]
gi|394294181|gb|EJE37867.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH06004]
gi|394297584|gb|EJE41181.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH05003]
gi|394299172|gb|EJE42723.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH04003]
gi|394302306|gb|EJE45754.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH051668]
gi|394304255|gb|EJE47662.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIH051475]
gi|406656997|gb|EKC83390.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
epidermidis AU12-03]
Length = 514
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++ VL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKI 340
>gi|416124308|ref|ZP_11595304.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis FRI909]
gi|420176865|ref|ZP_14683259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM057]
gi|420179459|ref|ZP_14685750.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM053]
gi|319401418|gb|EFV89628.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis FRI909]
gi|394251772|gb|EJD96848.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM057]
gi|394253663|gb|EJD98659.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM053]
Length = 517
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++ VL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKI 340
>gi|229092810|ref|ZP_04223948.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42]
gi|228690608|gb|EEL44389.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42]
Length = 457
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>gi|401679751|ref|ZP_10811675.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. ACP1]
gi|400218878|gb|EJO49749.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. ACP1]
Length = 438
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 140/275 (50%), Gaps = 20/275 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL GY TD+ E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLETVGYIPTDDVESADLILLNTCAVRETAETKVFGRI 61
Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K K L++A GC+ Q ++ K + IV G I + E++ E + H+
Sbjct: 62 GELKRLKQKNKDLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVKRTHK 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQINVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ + + I + R + + LH+P+QSGSD +L
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRIL 269
>gi|398814339|ref|ZP_10573020.1| ribosomal protein S12 methylthiotransferase RimO [Brevibacillus sp.
BC25]
gi|398036608|gb|EJL29817.1| ribosomal protein S12 methylthiotransferase RimO [Brevibacillus sp.
BC25]
Length = 448
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 141/283 (49%), Gaps = 18/283 (6%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSP 109
++ K+ E + + T GC N DS+ MA + GY L DN EEA + ++NTC + +
Sbjct: 1 MTEKVGTREKVAIVTLGCEKNLVDSDMMAHLIDEKGYELVDNPEEATVVIVNTCGFIDAA 60
Query: 110 SQSAMDTLIA----KCKSAKKPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVV 162
+ +++ ++ K K LVVAGC+ Q ++ L E+ V IVG + ++
Sbjct: 61 KEESVNKILEMGELKESGKLKSLVVAGCLTQRYKEDILNEIPEVDGIVGTGDFMSITGII 120
Query: 163 EETLKGHEVRLLHRKKLPALDL--PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
EE+L+G + D+ KV++ + + I GC ACT+C RG S
Sbjct: 121 EESLEGKRPIFVGNPIFTYEDVVKRKVKQGTYTAYIKIAEGCDNACTFCSIPLMRGGFRS 180
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTM 277
T+ES+V R + A G+ EV L ++D+ YG DI + LP LLN + AE+ +G
Sbjct: 181 RTIESIVEEARHLAAQGIVEVSLIAQDSTNYGTDIYDGKLMLPELLNRL-AEV--EGIEW 237
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+R+ P F + L I +P V ++ +P+Q D +L
Sbjct: 238 IRLHYAYPGFFTDEL--IHTFATNPKVCKYVDMPLQHSEDHIL 278
>gi|294791811|ref|ZP_06756959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
gi|294793672|ref|ZP_06758809.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
gi|416999213|ref|ZP_11939882.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula
ACS-068-V-Sch12]
gi|294455242|gb|EFG23614.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
gi|294457041|gb|EFG25403.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
gi|333977366|gb|EGL78225.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula
ACS-068-V-Sch12]
Length = 437
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 139/275 (50%), Gaps = 20/275 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL + GY T+N E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61
Query: 119 AKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K+ + V GC+ Q ++ K + IV G I + E++EE GH
Sbjct: 62 GELKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHT 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNSVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLIDALDG-IP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ + + I + R + + LH+P+QSGS+ +L
Sbjct: 237 QDMSKSM--IDALGRSSNIVTHLHLPIQSGSNRIL 269
>gi|418634076|ref|ZP_13196474.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU129]
gi|420189484|ref|ZP_14695458.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM037]
gi|420204215|ref|ZP_14709775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM015]
gi|374838068|gb|EHS01625.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU129]
gi|394262034|gb|EJE06819.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM037]
gi|394274229|gb|EJE18654.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM015]
Length = 514
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++ VL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKI 340
>gi|420212653|ref|ZP_14718001.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM001]
gi|394279614|gb|EJE23920.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM001]
Length = 514
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++ VL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKI 340
>gi|242242576|ref|ZP_04797021.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
W23144]
gi|418329422|ref|ZP_12940490.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis 14.1.R1.SE]
gi|418615521|ref|ZP_13178463.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU118]
gi|418630421|ref|ZP_13192903.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU128]
gi|420174938|ref|ZP_14681384.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM061]
gi|420191659|ref|ZP_14697570.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM023]
gi|242234003|gb|EES36315.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus epidermidis
W23144]
gi|365230457|gb|EHM71552.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis 14.1.R1.SE]
gi|374816960|gb|EHR81151.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU118]
gi|374837962|gb|EHS01520.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU128]
gi|394244471|gb|EJD89813.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM061]
gi|394265810|gb|EJE10457.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM023]
Length = 514
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++ VL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKI 340
>gi|420187502|ref|ZP_14693522.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM039]
gi|394255944|gb|EJE00880.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM039]
Length = 514
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++ VL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKI 340
>gi|220909156|ref|YP_002484467.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 7425]
gi|219865767|gb|ACL46106.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7425]
Length = 446
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 140/283 (49%), Gaps = 22/283 (7%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+ T ++ TFGC N++DSE MAG L G+ +N E AD+ L NTCT++ ++ +
Sbjct: 1 MSATRRYHITTFGCQMNKADSERMAGVLEDLGFIWEENPEVADLVLYNTCTIRDNAEQKV 60
Query: 115 DTLIAKCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETL 166
+ + K K+ LVVAGCV Q G + L+ + + +V G Q +R+ E++E+
Sbjct: 61 YSYLGKQARRKRDRPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQYANRLGELLEQVF 120
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVE 224
G++V ++ D+ K RR+ V +NV GC CTYC + RG S T
Sbjct: 121 NGNQVVATEPLQI-VEDITKPRRDSSVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPA 178
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTML 278
++ + + G KEV L ++ AYGRD+ G + L + + G +
Sbjct: 179 AIRAEIEELARQGYKEVTLLGQNIDAYGRDLPGVTPEGRHQHTLTDLLYYIHDVPGIERI 238
Query: 279 RIGMTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
R ++P + E L + AE+ P V H+P QSG + +L
Sbjct: 239 RFATSHPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDIL 278
>gi|373857373|ref|ZP_09600115.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus sp. 1NLA3E]
gi|372453023|gb|EHP26492.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus sp. 1NLA3E]
Length = 514
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 132/274 (48%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGICLSLGYQPTDTVEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE 170
K KK L V GC+ Q + ++ I G I R+ +++E E
Sbjct: 131 LKVLKKERPDLLLGVCGCMSQEESVVNKILSKHPHIDMIFGTHNIHRLPNILQEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC RG S E ++
Sbjct: 191 MVVEVWSKEGDVIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G +E+ L ++ AYG+D+ + L ++ E+ G +R ++P
Sbjct: 251 EVRQLAAQGYQEITLLGQNVNAYGKDL-TEMNYGLGNLMDEIRLMGVPRIRFSTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL I + + + +H+PVQSGS VL +
Sbjct: 310 DDHL--IKVLAKKGNLMEHIHLPVQSGSTDVLKI 341
>gi|374708575|ref|ZP_09713009.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sporolactobacillus inulinus CASD]
Length = 494
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 137/276 (49%), Gaps = 22/276 (7%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ D+E MAG L GY TD+ + AD+ LINTC ++ +++ + I K
Sbjct: 54 IETYGCQMNEHDTEVMAGILEKMGYHETDDPKLADVILINTCAIRENAENKVFGHIGTLK 113
Query: 123 SAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE-- 170
+ K KP L V GC+ Q + ++ I G I R+ ++++E L E
Sbjct: 114 TLKLEKPGLILGVCGCMAQEEVVVNKILAKHPQVDLIFGTHNIHRLPQLLKEALFSKEMV 173
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ +LP+ RR F + I GC CTYC + RG S E +V V
Sbjct: 174 VEVWSKEGDIVENLPQSRRGHFQAWVNIMYGCDKFCTYCIVPYTRGKERSRHPEEIVQEV 233
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA----IVAELPPDGSTMLRIGMTNPP 286
R + G KE+ L ++ AYG+D LP L N ++ E+ G +R ++P
Sbjct: 234 RELARQGYKEITLLGQNVNAYGKD----LPDLENYGLGNLMDEIRQIGIPRVRFTTSHPK 289
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + C + +H+PVQSGS +L +
Sbjct: 290 DFDDHLIEVLAKGGNLCEH--IHLPVQSGSSDILKI 323
>gi|379003862|ref|YP_005259534.1| MiaB-like tRNA modifying enzyme, archaeal-type [Pyrobaculum
oguniense TE7]
gi|375159315|gb|AFA38927.1| MiaB-like tRNA modifying enzyme, archaeal-type [Pyrobaculum
oguniense TE7]
Length = 416
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 30/267 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GC ++D+E + +L G + E+AD+ +I TC V+ + I +
Sbjct: 5 YIETYGCWLAKADAEIIRQRL---GLVAVERPEDADVVMIYTCAVREDGEVRQLARIREL 61
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+K +VVAGC L +L +I R++ E ++G + R + K LP
Sbjct: 62 AGLRKEVVVAGC-------LAKLRPYTIKSAAPNARLLYPSE--VEGGQKREM--KVLPR 110
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGV 238
+ + +P+ VGCLG CT+C TK+ RG G S + +V V+ +A G
Sbjct: 111 YE------GGVIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSANPDDVVRHVKEAVARGA 164
Query: 239 KEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
KE++L+ +D YG D+ G +LP LL I+ E+ +G +RIGM+ P
Sbjct: 165 KEIYLTGQDVITYGFDMRWRPGWSLPDLLERILREV--EGEYRVRIGMSEPWVFARFADR 222
Query: 295 IAEVLR-HPCVYSFLHVPVQSGSDAVL 320
+ ++++ VY + H+PVQSGSD VL
Sbjct: 223 LLDIVKGDRRVYRYFHLPVQSGSDKVL 249
>gi|399055610|ref|ZP_10743305.1| ribosomal protein S12 methylthiotransferase RimO [Brevibacillus sp.
CF112]
gi|433545974|ref|ZP_20502312.1| hypothetical protein D478_19889 [Brevibacillus agri BAB-2500]
gi|398046819|gb|EJL39403.1| ribosomal protein S12 methylthiotransferase RimO [Brevibacillus sp.
CF112]
gi|432182590|gb|ELK40153.1| hypothetical protein D478_19889 [Brevibacillus agri BAB-2500]
Length = 448
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 139/283 (49%), Gaps = 18/283 (6%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSP 109
++ K+ E + + T GC N DS+ MA + GY L DN EEA + ++NTC + +
Sbjct: 1 MAEKVGTREKVAIVTLGCEKNLVDSDMMAHLIDEKGYELVDNPEEATVVIVNTCGFIDAA 60
Query: 110 SQSAMDTLIA----KCKSAKKPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVV 162
+ +++ ++ K K LVVAGC+ Q ++ L E+ V IVG + ++
Sbjct: 61 KEESVNKILEMGELKETGKLKSLVVAGCLTQRYKEDILNEIPEVDGIVGTGDFMSITGII 120
Query: 163 EETLKGHEVRLLHRKKLPALDL--PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
EE+L G + D+ KV+ + + I GC ACT+C RG S
Sbjct: 121 EESLAGKRPIFVGNPIFTYEDVVKRKVKEGTYSAYIKIAEGCDNACTFCSIPLMRGGFRS 180
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTM 277
T+ES+V R + A G+ EV L ++D+ YG DI + LP LLN + AE+ DG
Sbjct: 181 RTIESIVEEARHLAAQGIVEVSLIAQDSTNYGTDIYDGKLMLPELLNRL-AEV--DGIEW 237
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+R+ P F + L I +P V ++ +P+Q D +L
Sbjct: 238 IRLHYAYPGFFTDEL--IHTFATNPKVCKYVDMPLQHSEDHIL 278
>gi|423469985|ref|ZP_17446729.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-2]
gi|402437237|gb|EJV69261.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-2]
Length = 509
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 142/278 (51%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL ++ ++ H +H+PVQSGS +L +
Sbjct: 307 DDHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>gi|420185401|ref|ZP_14691493.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM040]
gi|394254387|gb|EJD99356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM040]
Length = 514
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 136/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYNATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRIRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++ VL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKI 340
>gi|242373585|ref|ZP_04819159.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
M23864:W1]
gi|242348948|gb|EES40550.1| 2-methylthioadenine synthetase [Staphylococcus epidermidis
M23864:W1]
Length = 514
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 135/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY+ T + +AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILKALGYSATSDINQADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPECLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 NEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + +H+PVQSG++AVL +
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKI 340
>gi|296132994|ref|YP_003640241.1| MiaB family RNA modification protein [Thermincola potens JR]
gi|296031572|gb|ADG82340.1| RNA modification enzyme, MiaB family [Thermincola potens JR]
Length = 449
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 140/288 (48%), Gaps = 43/288 (14%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ +++TFGC N+ DSE MAG L GY N+E+ADI ++NTCTV+ +++ + I
Sbjct: 9 QKYFLQTFGCQMNERDSETMAGLLEGMGYEPVANAEDADIIILNTCTVRETAENKVWGRI 68
Query: 119 AKCKS--AKKPLV---VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKG 168
+ K+ +KKP V + GC+ Q +++ + I G I + E++
Sbjct: 69 GELKALKSKKPDVIIGICGCMAQQKETAEKIRRKAPHIELIFGTHNIHELPEMIN----- 123
Query: 169 HEVRLLHRKKLPAL-----------DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
RL+ +K P L +LP R++K + I GC CTYC + RG
Sbjct: 124 ---RLVAERK-PLLNVWNAEGSIVENLPARRKSKVKAFVSIMFGCNNFCTYCIVPYVRGR 179
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-----GVNLPILLNAIVAELPP 272
S + +V V+++ G KEV L ++ +YG+D+ +L +LN I
Sbjct: 180 ERSRQIADIVREVKSLAEQGYKEVTLLGQNVNSYGKDLPEKTDFSDLLEVLNEI------ 233
Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
DG +R ++P L ++ + R V H+PVQSGS+++L
Sbjct: 234 DGIRRIRYMTSHPRDFTSKLIDV--IARSEKVCEHFHLPVQSGSNSIL 279
>gi|163941460|ref|YP_001646344.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
weihenstephanensis KBAB4]
gi|229890426|sp|A9VS16.1|MIAB_BACWK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|163863657|gb|ABY44716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus
weihenstephanensis KBAB4]
Length = 509
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL ++ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|15643418|ref|NP_228462.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
maritima MSB8]
gi|418045177|ref|ZP_12683273.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
gi|81553183|sp|Q9WZC1.1|MIAB_THEMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|4981175|gb|AAD35737.1|AE001738_17 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678259|gb|EHA61406.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
Length = 443
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 138/274 (50%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y+KTFGC N++DSE MAG L G+ + EEAD+ +INTC V+ S+ + + +
Sbjct: 3 FYIKTFGCQMNENDSEAMAGLLVKEGFTPASSPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 121 CKSAKKPLV----VAGCVPQGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL- 174
KK VAGCV + R+ +G V G + + RV E V++ L+G +V L
Sbjct: 63 VLKLKKKKKIVVGVAGCVAEKEREKFLEKGADFVLGTRAVPRVTEAVKKALEGEKVALFE 122
Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H + +LP++R ++ + I GC CTYC + RG S + ++ V+ +
Sbjct: 123 DHLDEYTH-ELPRIRTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSRPMADILEEVKKL 181
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AEQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSDE 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L E+ + ++P V +H+PVQSGS+ +L + +
Sbjct: 239 LIEV--IAKNPKVAKSVHLPVQSGSNRILKLMNR 270
>gi|284048550|ref|YP_003398889.1| MiaB family RNA modification protein [Acidaminococcus fermentans
DSM 20731]
gi|283952771|gb|ADB47574.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
DSM 20731]
Length = 442
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 136/279 (48%), Gaps = 29/279 (10%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N+SDSE+ AGQLS GY T++ +AD+ LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNESDSEHYAGQLSDLGYHYTEDYHDADVILINTCCVRESAEKKILGKIGEMKQVK 69
Query: 126 -----KPLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K L V GC+ Q G LK+ V ++G ++ ++++ L H+ + RK
Sbjct: 70 REDPSKVLCVTGCMAQKDGEDFLKKYPQVDLLIGTAHVNNFSAILQDYL--HQTQ---RK 124
Query: 178 KLPALDL---PK------VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
DL P+ VR++ + +PI GC CTYC + RG S + E++
Sbjct: 125 SGMFNDLTVMPREFEGHFVRKSSYAAWVPIMYGCNNFCTYCIVPYVRGRERSRSAEAICE 184
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPP 286
+R + G +E L ++ +YG+D G LL + A +P G +R ++P
Sbjct: 185 EIRKAVDQGYREFTLLGQNVNSYGKDRGDKDAFAALLRQVDA-IP--GVERVRYMTSHPR 241
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L +H C + H+PVQSGS ++ +
Sbjct: 242 DMSEELIRTVAESKHVCKH--FHIPVQSGSTRIMQAMNR 278
>gi|145591528|ref|YP_001153530.1| RNA modification protein [Pyrobaculum arsenaticum DSM 13514]
gi|145283296|gb|ABP50878.1| RNA modification enzyme, MiaB family [Pyrobaculum arsenaticum DSM
13514]
Length = 416
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 30/267 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GC ++D+E + +L G + E+AD+ +I TC V+ + I +
Sbjct: 5 YIETYGCWLAKADAEIIRQRL---GLVAVERPEDADVVMIYTCAVREDGEVRQLARIREL 61
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+K +VVAGC L +L +I R++ E ++G + R + K LP
Sbjct: 62 AGLRKEVVVAGC-------LAKLRPYTIKSAAPNARLLYPSE--VEGGQKREM--KVLPR 110
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGV 238
+ + +P+ VGCLG CT+C TK+ RG G S + +V V+ +A G
Sbjct: 111 YE------GGVIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSANPDDVVRHVKEAVARGA 164
Query: 239 KEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
KE++L+ +D YG D+ G +LP LL I+ E+ +G +RIGM+ P
Sbjct: 165 KEIYLTGQDVITYGFDMRWRPGWSLPDLLERILREV--EGEYRVRIGMSEPWVFARFADR 222
Query: 295 IAEVLR-HPCVYSFLHVPVQSGSDAVL 320
+ ++++ VY + H+PVQSGSD VL
Sbjct: 223 LLDIVKGDRRVYRYFHLPVQSGSDRVL 249
>gi|402829205|ref|ZP_10878081.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Slackia sp. CM382]
gi|402284186|gb|EJU32689.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Slackia sp. CM382]
Length = 454
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 135/285 (47%), Gaps = 26/285 (9%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
+I +T Y T+GC N+ DSE +AG L + G EE++I + TC V+ +
Sbjct: 5 EILTNKTFYTFTYGCQMNEHDSERIAGLLESCGCVPVSTLEESEIVIFMTCCVRERADIR 64
Query: 114 MDTLIAKCKSA---------KKPLVVAGCVPQGSRD----LKELEGVSIV-GVQQIDRVV 159
+ ++ K K+ + + GC+ G RD + L+ V +V G Q I+R+
Sbjct: 65 LMGQVSTIKGVPLPEGSALDKRIVCIGGCI--GQRDGVALTETLDNVDVVFGTQNIERLP 122
Query: 160 EVVEETLK--GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
++ L GH V + + DLP R + LPI VGC CT+C + RG
Sbjct: 123 YLITGVLSQGGHFVEIEQDSDSFSTDLPSDREKPWSAWLPITVGCDNFCTFCIVPYVRGR 182
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGS 275
S T+E +V +A+GVKE+ L ++ +YGRD+ +L A+ A G
Sbjct: 183 ERSRTIEDVVTNAEAYVAEGVKEITLLGQNVNSYGRDLYGSPRFADVLKAVAAT----GV 238
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
LR ++P + + + IA + LH+PVQSGSD VL
Sbjct: 239 ERLRFATSHPKDLTDEV--IAAFGELGNLMPALHLPVQSGSDRVL 281
>gi|303228532|ref|ZP_07315360.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-134-V-Col7a]
gi|302516779|gb|EFL58693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-134-V-Col7a]
Length = 438
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 140/275 (50%), Gaps = 20/275 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL GY TD+ E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLEIVGYIPTDDVESADLILLNTCAVRETAETKVFGRI 61
Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K K L++A GC+ Q ++ K + IV G I + E++ E + H+
Sbjct: 62 GELKRLKQKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHK 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQINVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ + + I + R + + LH+P+QSGSD +L
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRIL 269
>gi|282850159|ref|ZP_06259538.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
17745]
gi|282579652|gb|EFB85056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
17745]
Length = 437
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 139/275 (50%), Gaps = 20/275 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL + GY T+N E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61
Query: 119 AKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K+ + V GC+ Q ++ K + IV G I + E++EE GH
Sbjct: 62 GELKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHT 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNSVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDALDG-IP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ + + I + R + + LH+P+QSGS+ +L
Sbjct: 237 QDMSKSM--IDALGRSSNIVTHLHLPIQSGSNRIL 269
>gi|414153655|ref|ZP_11409977.1| putative AdoMet-dependent methyltransferase,UPF0004 family
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411454676|emb|CCO07881.1| putative AdoMet-dependent methyltransferase,UPF0004 family
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 435
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 135/280 (48%), Gaps = 20/280 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T IY T GC NQ +S MA GY + D + AD+++INTCTV +
Sbjct: 3 TAAIY--TLGCKVNQYESAAMADLFRRAGYRVVDFEQPADVYIINTCTVTHLGDRKSRQM 60
Query: 118 IAKCKSAKKPLVVA--GCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
I + V+A GC Q S ++ E+ GV+ +VG R+V++VEE G +
Sbjct: 61 IRRAAKQNPAAVIAVTGCYAQTSPGEVLEIPGVNLVVGTADKSRIVQLVEE-YAGRTAPV 119
Query: 174 LHRKKLPALD----LP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ A D LP + K L I GC C YC +ARG + S E++V
Sbjct: 120 QAVADVMAKDCFDELPVPTEQGKSRAFLKIQEGCNSFCAYCIIPYARGPVRSRLPENVVR 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+I G +E+ L+ GAYG+D+ +NL L+ + A LP G T LR+G P
Sbjct: 180 SATQLIQQGYQEIVLTGIHIGAYGQDLADPRINLGWLVERL-ARLP--GLTRLRLGSVEP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
I + L I V HP + LH+P+QSG D +L+ Q+
Sbjct: 237 HDINQQL--ITAVANHPNICRHLHIPLQSGDDQILAGMQR 274
>gi|150019979|ref|YP_001305333.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
melanesiensis BI429]
gi|229891013|sp|A6LJ47.1|MIAB_THEM4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|149792500|gb|ABR29948.1| RNA modification enzyme, MiaB family [Thermosipho melanesiensis
BI429]
Length = 430
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 135/268 (50%), Gaps = 17/268 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I++KT+GC N++DSE L GY +T+N +ADI ++NTC V+ S+ + I +
Sbjct: 4 IHIKTYGCQMNENDSEVAKFYLEEEGYEITNNENDADIVILNTCVVRKKSEDKFYSHIGE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K + + GC + ++ GV ++G + I + + VE + G + + K+
Sbjct: 64 LKKQNKIIGIMGCGAEKEKEKLFKRGVKFVIGTRAIPLIPQAVERAINGKKSAIFE-DKM 122
Query: 180 PALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+D K+ R +K + I GC CTYC + RG S ++ ++ V + G
Sbjct: 123 DEIDYKKILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMDDIINEVENLAKSG 182
Query: 238 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG-MTNPP--FILEHL 292
+KEV ++ AYG+D+ G +L LLN L D + RI +T+ P F L+
Sbjct: 183 IKEVTYLGQNVDAYGKDLNDGSSLAKLLN-----LTKDIEEIERIWFLTSYPTDFSLDIA 237
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A + + +H+PVQ GS+ +L
Sbjct: 238 HEVANSSK---ITKNIHLPVQHGSNKIL 262
>gi|423611991|ref|ZP_17587852.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD107]
gi|401246998|gb|EJR53342.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD107]
Length = 509
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 142/278 (51%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRHPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL ++ ++ H +H+PVQSGS +L +
Sbjct: 307 DDHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>gi|296133939|ref|YP_003641186.1| MiaB family RNA modification protein [Thermincola potens JR]
gi|296032517|gb|ADG83285.1| RNA modification enzyme, MiaB family [Thermincola potens JR]
Length = 445
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 132/274 (48%), Gaps = 21/274 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ T GC NQ ++E +A GY + + S++AD+++INTCTV +I +
Sbjct: 4 VAFHTLGCKVNQYETEALASLFRRQGYQVVEFSDKADVYVINTCTVTHLGDRKSRQMIRR 63
Query: 121 CKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEE--------TLKG 168
K +VA GC Q S ++ +EGV +V G +VVE VE+ L
Sbjct: 64 AKRNNPDAIVAVMGCYAQTSPGEVTAIEGVDLVIGTSDRSKVVECVEDFKRQDTPVNLVK 123
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
++ ++LP LD R L I GC CTYC +ARG + S ++++
Sbjct: 124 DIMQAREFEELPVLDYESRTR----AFLKIQEGCNNFCTYCIIPYARGPVRSRKRDNVIT 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 287
++ +G +E+ L+ GAYGRD L A+VA+L G LR+G P
Sbjct: 180 EAERLVGEGFREIVLTGIHIGAYGRDRDDGYD--LAALVADLARIKGLRRLRLGSVEPED 237
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ HL IA + + + LH+P+QSG DAVL
Sbjct: 238 VTPHL--IATMADNRVICRHLHLPLQSGDDAVLE 269
>gi|418563261|ref|ZP_13127702.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21262]
gi|371971386|gb|EHO88787.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21262]
Length = 514
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRD---IGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+D I +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQNIKYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|282916552|ref|ZP_06324310.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus D139]
gi|283770356|ref|ZP_06343248.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19]
gi|282319039|gb|EFB49391.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus D139]
gi|283460503|gb|EFC07593.1| 2-alkenal reductase [Staphylococcus aureus subsp. aureus H19]
Length = 514
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATSDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|239636980|ref|ZP_04677974.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
L37603]
gi|239597330|gb|EEQ79833.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
L37603]
Length = 514
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 135/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY+ T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILEALGYSATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I R+ E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + +H+PVQSG++AVL +
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKI 340
>gi|417642888|ref|ZP_12292968.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus warneri
VCU121]
gi|445059788|ref|YP_007385192.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
warneri SG1]
gi|330686356|gb|EGG97959.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis VCU121]
gi|443425845|gb|AGC90748.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
warneri SG1]
Length = 514
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 135/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY+ T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILEALGYSATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I R+ E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + +H+PVQSG++AVL +
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKI 340
>gi|228922487|ref|ZP_04085789.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228940850|ref|ZP_04103410.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228973771|ref|ZP_04134348.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980326|ref|ZP_04140637.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
gi|384187776|ref|YP_005573672.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410676093|ref|YP_006928464.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
thuringiensis Bt407]
gi|423581983|ref|ZP_17558094.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD014]
gi|423635455|ref|ZP_17611108.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD156]
gi|452200154|ref|YP_007480235.1| tRNA-i(6)A37 methylthiotransferase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779431|gb|EEM27687.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
gi|228785923|gb|EEM33925.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818864|gb|EEM64929.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228837201|gb|EEM82540.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|326941485|gb|AEA17381.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401212862|gb|EJR19603.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD014]
gi|401278206|gb|EJR84142.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD156]
gi|409175222|gb|AFV19527.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
thuringiensis Bt407]
gi|452105547|gb|AGG02487.1| tRNA-i(6)A37 methylthiotransferase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 509
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|428778989|ref|YP_007170775.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Dactylococcopsis salina PCC 8305]
gi|428693268|gb|AFZ49418.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Dactylococcopsis salina PCC 8305]
Length = 447
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 144/278 (51%), Gaps = 26/278 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ TFGC N++DSE MAG L A GY ++ AD+ + NTCT++ ++ + + +
Sbjct: 10 HITTFGCQMNKADSERMAGILDAMGYQAEEDPYLADLVVYNTCTIRDNAEQKVYSYLGRQ 69
Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K KSA LVVAGCV Q G + L+ + + +V G Q +R+ +++E+ +G++V +
Sbjct: 70 AKRKQKSADLTLVVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLGDLLEQVQEGNQV-V 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
D+ K RR+ + +NV GC C+YC + RG S T E++ +
Sbjct: 129 ATEPIYIMEDITKPRRDSDISAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAIREEME 187
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
T+ A G +EV L ++ AYGRD+ + P L V ++P G +R +
Sbjct: 188 TLAAQGYQEVTLLGQNIDAYGRDLPGSTPEGRHKHTFTDLLYYVHDVP--GIERIRFATS 245
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+P + E L K AE+ P V H+P QSG + +L
Sbjct: 246 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNEIL 280
>gi|16078764|ref|NP_389583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. subtilis str. 168]
gi|221309576|ref|ZP_03591423.1| hypothetical protein Bsubs1_09356 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313900|ref|ZP_03595705.1| hypothetical protein BsubsN3_09287 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318823|ref|ZP_03600117.1| hypothetical protein BsubsJ_09216 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323095|ref|ZP_03604389.1| hypothetical protein BsubsS_09327 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|452913965|ref|ZP_21962592.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis MB73/2]
gi|6226482|sp|O31778.1|MIAB_BACSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2634073|emb|CAB13574.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
subtilis subsp. subtilis str. 168]
gi|407959107|dbj|BAM52347.1| (dimethylallyl)adenosine tRNAmethylthiotransferase [Synechocystis
sp. PCC 6803]
gi|407964684|dbj|BAM57923.1| (dimethylallyl)adenosine tRNAmethylthiotransferase [Bacillus
subtilis BEST7003]
gi|452116385|gb|EME06780.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis MB73/2]
Length = 509
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 138/274 (50%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS VL +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKL 338
>gi|269797930|ref|YP_003311830.1| MiaB family RNA modification protein [Veillonella parvula DSM 2008]
gi|269094559|gb|ACZ24550.1| RNA modification enzyme, MiaB family [Veillonella parvula DSM 2008]
Length = 437
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 139/275 (50%), Gaps = 20/275 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL + GY T+N E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61
Query: 119 AKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K+ + V GC+ Q ++ K + IV G I + E++EE GH
Sbjct: 62 GELKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHT 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNTVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDALDG-IP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ + + I + R + + LH+P+QSGS+ +L
Sbjct: 237 QDMSKSM--IDALGRSSNIVTHLHLPIQSGSNRIL 269
>gi|255657963|ref|ZP_05403372.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM
20544]
gi|260850164|gb|EEX70171.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM
20544]
Length = 444
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 136/288 (47%), Gaps = 30/288 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ +GC NQSD+E M GQL GY T++ EEAD+ LINTC V+ ++ + I +
Sbjct: 13 YLLVYGCQMNQSDAERMMGQLRTIGYERTESMEEADLILINTCCVRETAEDRVYGKIGEI 72
Query: 122 KSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL--KGHEV 171
K K+ + GC+ Q D +K + V G ++ + VV+E GH V
Sbjct: 73 KRLKRENPELIFGITGCMAQKEGDALIKRAPHIDFVLGTNKVHELTHVVQEIQAEHGHVV 132
Query: 172 RL-LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ L +LP D+P R +PI GC CTYC + RG S E +V V
Sbjct: 133 DVQLGETELPD-DVPVARAGSLSAWVPIMYGCNNFCTYCIVPYVRGRERSRLPEDIVHEV 191
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ +G +EV L ++ +YG+D + L +V ++P G+ F+
Sbjct: 192 EEAVKNGYEEVTLLGQNVNSYGKDHKLADFADLLKMVDKVP---------GIRRVRFMTS 242
Query: 291 HLKEIAEVL-------RHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKS 331
H K++++ + H C +H+PVQ GS+ +L ++ +S
Sbjct: 243 HPKDLSDKVIAAIRDGEHLC--EHIHLPVQYGSNRILKAMNRVYTVES 288
>gi|321315467|ref|YP_004207754.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis BSn5]
gi|386758424|ref|YP_006231640.1| tRNA-i(6)A37 methylthiotransferase [Bacillus sp. JS]
gi|430758878|ref|YP_007209599.1| hypothetical protein A7A1_3386 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|320021741|gb|ADV96727.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis BSn5]
gi|384931706|gb|AFI28384.1| tRNA-i(6)A37 methylthiotransferase [Bacillus sp. JS]
gi|430023398|gb|AGA24004.1| Hypothetical protein YmcB [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 509
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 138/274 (50%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS VL +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKL 338
>gi|302389780|ref|YP_003825601.1| 30S ribosomal protein S12P methylthiotransferase
[Thermosediminibacter oceani DSM 16646]
gi|302200408|gb|ADL07978.1| SSU ribosomal protein S12P methylthiotransferase
[Thermosediminibacter oceani DSM 16646]
Length = 441
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 145/285 (50%), Gaps = 16/285 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTL 117
E I + + GC N DSEY+ G L GY +T ++ EADI +INTC + S Q ++DT+
Sbjct: 3 EKIGLVSLGCDKNLVDSEYLLGALLENGYVITSDASEADIIIINTCCFINSAKQESIDTI 62
Query: 118 I--AKCKSAK--KPLVVAGCVPQ--GSRDLKEL-EGVSIVGVQQIDRVVEVVEETLKGHE 170
+ A+ K++ K L+ GC+ Q G LKE+ E +++G ++ ++E+
Sbjct: 63 LEMAQYKTSGNCKMLIATGCLAQRYGDAILKEIPELDAVIGTGDFHKLPGLIEKLNNSRL 122
Query: 171 VRLLHRKKLPALDLPK-VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + D+ K VR + + + I GC C+YC RG S +ES+
Sbjct: 123 KIITENRSFINYDIKKRVRTSNYFSYVKIAEGCSNCCSYCAIPQIRGPYKSRPIESIKEE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V +++ GVKE+ L ++DT +YG DI +LP LL A+V G +RI P
Sbjct: 183 VELLVSQGVKEINLVAQDTTSYGMDISGKPSLPDLLRALV---DIKGEFWIRILYAYPTH 239
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332
I + L E+ + + +L +P+Q +D +L + + + ++ +
Sbjct: 240 IDDELLEL--ISSSTKIAKYLDIPLQHINDRILRLMNRPINSEQI 282
>gi|399924401|ref|ZP_10781759.1| Fe-S oxidoreductase [Peptoniphilus rhinitidis 1-13]
Length = 432
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 135/278 (48%), Gaps = 28/278 (10%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T + T GC NQ +SE M+ GY DN E +D++++NTCTV + S I
Sbjct: 3 KTFSILTLGCKVNQYESEAMSELFEKRGYKEVDNDEFSDVYIVNTCTVTNLSDRKSRQFI 62
Query: 119 AKCKSAKKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K K K P +VV GC Q S ++K +EGV +V G + +++V+++EE H
Sbjct: 63 RKSKK-KNPDSVVVVVGCYSQVSPEEVKNIEGVDVVIGTTERNKIVDLIEEFKDSH---- 117
Query: 174 LHRKKLPAL-DLPKVRR----------NKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
KK+ + DL VR N+ + + GC CTYC ARG + S
Sbjct: 118 ---KKINIVKDLKDVREFANTTNFDNNNRTRAYMKVQDGCNRFCTYCIIPFARGPIRSRE 174
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
++ V R + +G KE+ L+ G++G D+G I L +AE+ DG +R+
Sbjct: 175 IDDAVREARILADNGFKEIVLTGIHIGSFGMDMGDMRLIDLIENIAEI--DGIKRIRLSS 232
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P I + E + L+ + H+ +QSGS+ +L
Sbjct: 233 VEPIIITDEFMERS--LKTEKLCDHFHLSLQSGSNNIL 268
>gi|422745475|ref|ZP_16799414.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320140890|gb|EFW32737.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus MRSA131]
Length = 514
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|418321587|ref|ZP_12932926.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus VCU006]
gi|365224202|gb|EHM65467.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus VCU006]
Length = 415
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|259909112|ref|YP_002649468.1| tRNA-thiotransferase [Erwinia pyrifoliae Ep1/96]
gi|224964734|emb|CAX56251.1| Putative tRNA-thiotransferase [Erwinia pyrifoliae Ep1/96]
Length = 480
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 153/287 (53%), Gaps = 24/287 (8%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
P T+ +++KT+GC N+ DS MA L S GY LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 6 PMTKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKV 65
Query: 115 DTLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETL 166
L+ + K K+ + V GCV +G++ + V IV G Q + R+ E++ ++
Sbjct: 66 FGLLGRWKKLKEANPDVIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMI-NSV 124
Query: 167 KGHEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
+G + ++ P ++ +P+ R N + I GC CT+C + RG S
Sbjct: 125 RGTKSPVVD-VSFPEIEKFDRMPEPRANGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRP 183
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLR 279
+ ++ V + A GV+EV L ++ AY D G+ L +VA + DG +R
Sbjct: 184 ADDVLFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVATI--DGIDRIR 241
Query: 280 IGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
++P +E +I EV R P + SFLH+PVQSG+D +L++ ++
Sbjct: 242 FTTSHP---IEFTDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKR 285
>gi|428279299|ref|YP_005561034.1| hypothetical protein BSNT_02749 [Bacillus subtilis subsp. natto
BEST195]
gi|291484256|dbj|BAI85331.1| hypothetical protein BSNT_02749 [Bacillus subtilis subsp. natto
BEST195]
Length = 509
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 138/274 (50%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS VL +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKL 338
>gi|15924282|ref|NP_371816.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus Mu50]
gi|15926875|ref|NP_374408.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus N315]
gi|21282904|ref|NP_645992.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus MW2]
gi|49486131|ref|YP_043352.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus MSSA476]
gi|148267782|ref|YP_001246725.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus JH9]
gi|150393841|ref|YP_001316516.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus JH1]
gi|156979613|ref|YP_001441872.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus Mu3]
gi|253733470|ref|ZP_04867635.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006079|ref|ZP_05144680.2| hypothetical protein SauraM_06400 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257795652|ref|ZP_05644631.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9781]
gi|258421638|ref|ZP_05684562.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9719]
gi|258434794|ref|ZP_05688868.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus A9299]
gi|258444630|ref|ZP_05692959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8115]
gi|258447537|ref|ZP_05695681.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A6300]
gi|258449379|ref|ZP_05697482.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A6224]
gi|258454758|ref|ZP_05702722.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A5937]
gi|269202909|ref|YP_003282178.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus ED98]
gi|282892780|ref|ZP_06301015.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8117]
gi|282927634|ref|ZP_06335250.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A10102]
gi|295406229|ref|ZP_06816036.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8819]
gi|296274850|ref|ZP_06857357.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus MR1]
gi|297244457|ref|ZP_06928340.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8796]
gi|300912143|ref|ZP_07129586.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus TCH70]
gi|384864519|ref|YP_005749878.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|385781520|ref|YP_005757691.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 11819-97]
gi|387150435|ref|YP_005741999.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus aureus 04-02981]
gi|415691142|ref|ZP_11453381.1| hypothetical protein CGSSa03_06074 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417651210|ref|ZP_12300973.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21172]
gi|417802625|ref|ZP_12449682.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21318]
gi|417892236|ref|ZP_12536290.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21201]
gi|417898390|ref|ZP_12542310.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21259]
gi|418424433|ref|ZP_12997555.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS1]
gi|418430268|ref|ZP_13003184.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS3a]
gi|418433234|ref|ZP_13006011.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS4]
gi|418436905|ref|ZP_13008707.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS5]
gi|418439777|ref|ZP_13011484.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS6]
gi|418442829|ref|ZP_13014431.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS7]
gi|418454712|ref|ZP_13025974.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS11a]
gi|418457588|ref|ZP_13028791.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS11b]
gi|418568964|ref|ZP_13133304.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21272]
gi|418572271|ref|ZP_13136483.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21333]
gi|418599718|ref|ZP_13163198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21343]
gi|418638108|ref|ZP_13200411.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-3]
gi|418654665|ref|ZP_13216561.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-99]
gi|418662198|ref|ZP_13223751.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-122]
gi|418878141|ref|ZP_13432376.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418880971|ref|ZP_13435190.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418883899|ref|ZP_13438094.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418886554|ref|ZP_13440702.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418894992|ref|ZP_13449087.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418914390|ref|ZP_13468362.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|418920371|ref|ZP_13474304.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418931363|ref|ZP_13485204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418934195|ref|ZP_13488018.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC128]
gi|418988114|ref|ZP_13535787.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1835]
gi|418991156|ref|ZP_13538817.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1096]
gi|419784943|ref|ZP_14310701.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-M]
gi|424768022|ref|ZP_18195315.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CM05]
gi|443636863|ref|ZP_21120956.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21236]
gi|448741809|ref|ZP_21723766.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus KT/314250]
gi|81649395|sp|Q6G9S1.1|MIAB_STAAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81704466|sp|Q7A110.1|MIAB_STAAW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81705771|sp|Q7A5W3.1|MIAB_STAAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81781679|sp|Q99UI1.1|MIAB_STAAM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891002|sp|A7X1T3.1|MIAB_STAA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891003|sp|A6U1B1.1|MIAB_STAA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891004|sp|A5ISH6.1|MIAB_STAA9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|13701092|dbj|BAB42387.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247062|dbj|BAB57454.1| similar to tRNA 2-methylthioadenosine synthase [Staphylococcus
aureus subsp. aureus Mu50]
gi|21204343|dbj|BAB95040.1| conserved hypotehtical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244574|emb|CAG43003.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|147740851|gb|ABQ49149.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus JH9]
gi|149946293|gb|ABR52229.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus JH1]
gi|156721748|dbj|BAF78165.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|253728524|gb|EES97253.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
TCH130]
gi|257789624|gb|EEV27964.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9781]
gi|257842324|gb|EEV66749.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9719]
gi|257849155|gb|EEV73137.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus A9299]
gi|257850123|gb|EEV74076.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8115]
gi|257853728|gb|EEV76687.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A6300]
gi|257857367|gb|EEV80265.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A6224]
gi|257863141|gb|EEV85905.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A5937]
gi|262075199|gb|ACY11172.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus ED98]
gi|282590637|gb|EFB95714.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A10102]
gi|282764777|gb|EFC04902.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8117]
gi|285816974|gb|ADC37461.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus aureus 04-02981]
gi|294968817|gb|EFG44839.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8819]
gi|297178487|gb|EFH37733.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A8796]
gi|300886389|gb|EFK81591.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus TCH70]
gi|312829686|emb|CBX34528.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315131086|gb|EFT87070.1| hypothetical protein CGSSa03_06074 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329727394|gb|EGG63850.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21172]
gi|334274261|gb|EGL92583.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21318]
gi|341848423|gb|EGS89586.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21259]
gi|341858203|gb|EGS99004.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21201]
gi|364522509|gb|AEW65259.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 11819-97]
gi|371978149|gb|EHO95399.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21272]
gi|371984755|gb|EHP01864.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21333]
gi|374396376|gb|EHQ67617.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21343]
gi|375014490|gb|EHS08171.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-99]
gi|375023332|gb|EHS16795.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-3]
gi|375036889|gb|EHS29950.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-122]
gi|377694263|gb|EHT18628.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377694798|gb|EHT19162.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377714645|gb|EHT38844.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377714986|gb|EHT39184.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377719902|gb|EHT44072.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377723278|gb|EHT47403.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377725507|gb|EHT49620.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377731864|gb|EHT55917.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377757892|gb|EHT81780.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377765730|gb|EHT89579.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC348]
gi|377770938|gb|EHT94697.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC128]
gi|383363544|gb|EID40876.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-M]
gi|387718663|gb|EIK06621.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS3a]
gi|387720340|gb|EIK08252.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS1]
gi|387725674|gb|EIK13278.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS4]
gi|387728009|gb|EIK15509.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS5]
gi|387730739|gb|EIK18100.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS6]
gi|387737494|gb|EIK24560.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS7]
gi|387745827|gb|EIK32577.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS11a]
gi|387747320|gb|EIK34029.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS11b]
gi|402348659|gb|EJU83638.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CM05]
gi|408423478|emb|CCJ10889.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|408425468|emb|CCJ12855.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|408427456|emb|CCJ14819.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|408429443|emb|CCJ26608.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|408431431|emb|CCJ18746.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|408433425|emb|CCJ20710.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|408435416|emb|CCJ22676.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|408437401|emb|CCJ24644.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus ST228]
gi|443406840|gb|ELS65410.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21236]
gi|445547447|gb|ELY15716.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus KT/314250]
Length = 514
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|422343286|ref|ZP_16424214.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia F0398]
gi|355378593|gb|EHG25773.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia F0398]
Length = 437
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 129/270 (47%), Gaps = 14/270 (5%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL A GYA T+ + ADI LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNIADAERMEGQLQAAGYARTEETANADIILINTCCVRETAEDKVYGKIGEVKKIK 69
Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 175
+ +AGC+ Q D ++ + V G ++ + ++ E H V +
Sbjct: 70 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIRAEHSPVVDVAL 129
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
A DLP R KF +PI GC CTYC + RG S E +V VR +A
Sbjct: 130 SDSEIAEDLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEVVAEVRRAVA 189
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G +EV L ++ +YG+D L +V E+ +G +R ++P I + L +
Sbjct: 190 EGYREVTLLGQNVNSYGKDHKEADFADLLRMVDEV--EGIRRVRFMTSHPKDISDKLIDT 247
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ H C + +H+PVQ GS +L +
Sbjct: 248 IKSGAHICEH--IHLPVQYGSSRLLKAMNR 275
>gi|416844728|ref|ZP_11905414.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus O46]
gi|323443943|gb|EGB01554.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus O46]
Length = 514
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILDALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|82750892|ref|YP_416633.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus RF122]
gi|123727480|sp|Q2YXS2.1|MIAB_STAAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|82656423|emb|CAI80843.1| conserved hypothetical protein [Staphylococcus aureus RF122]
Length = 514
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|153853286|ref|ZP_01994695.1| hypothetical protein DORLON_00681 [Dorea longicatena DSM 13814]
gi|149754072|gb|EDM64003.1| ribosomal protein S12 methylthiotransferase RimO [Dorea longicatena
DSM 13814]
Length = 440
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 134/275 (48%), Gaps = 21/275 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV-----KSPSQSAMD 115
I+ + GC N DSE M G L A GY + D+ AD+ +INTC + Q+ +D
Sbjct: 3 IFFVSLGCDKNLVDSEVMLGLLDAKGYQIVDDETLADVMVINTCCFIHDAKEESIQTILD 62
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH-EV 171
K + K LVV GC+ Q + + E+ V +V G D++VE VEE L+G EV
Sbjct: 63 MARYKEEGRLKALVVTGCLAQRYKQEIIDEIPEVDVVLGTTSYDKIVEAVEEALEGKSEV 122
Query: 172 RLLHRKKLPALDLPKVRR----NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
L LP LP+ +R L I GC CTYC RG+ S +E L+
Sbjct: 123 ELADINALP---LPETKRLVTTGGHYAYLKIAEGCDKHCTYCIIPKVRGNYRSVPMERLI 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTNPP 286
+ + GVKE+ L +++T YG+DI L+ ++ EL G +R+ P
Sbjct: 180 KEAQELADQGVKELILVAQETTVYGQDIYGEKS--LHKLLKELCQIKGIRWIRLLYCYPE 237
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
I ++L ++ + P + +L +P+Q SDA+L
Sbjct: 238 EIDDNLIQVMK--EEPKICHYLDLPIQHASDAILK 270
>gi|418317263|ref|ZP_12928687.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21340]
gi|365239635|gb|EHM80437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21340]
Length = 514
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|418448835|ref|ZP_13020226.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS9]
gi|418451656|ref|ZP_13022990.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS10]
gi|387737744|gb|EIK24804.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS9]
gi|387744537|gb|EIK31301.1| miaB- tRNA-I(6)A37 modification enzyme MiaB bifunctional enzyme
[Staphylococcus aureus subsp. aureus VRS10]
Length = 514
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|297208061|ref|ZP_06924492.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|296887304|gb|EFH26206.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ATCC 51811]
Length = 514
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|49483455|ref|YP_040679.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus MRSA252]
gi|253731911|ref|ZP_04866076.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257425346|ref|ZP_05601771.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257428007|ref|ZP_05604405.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430640|ref|ZP_05607022.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433400|ref|ZP_05609758.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus E1410]
gi|257436242|ref|ZP_05612289.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus M876]
gi|258423867|ref|ZP_05686752.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9635]
gi|282903847|ref|ZP_06311735.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus C160]
gi|282905610|ref|ZP_06313465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908586|ref|ZP_06316416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282910864|ref|ZP_06318667.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914069|ref|ZP_06321856.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus M899]
gi|282918991|ref|ZP_06326726.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus C427]
gi|282924114|ref|ZP_06331790.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus C101]
gi|283958035|ref|ZP_06375486.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293501101|ref|ZP_06666952.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 58-424]
gi|293510063|ref|ZP_06668771.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus M809]
gi|293526649|ref|ZP_06671334.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus M1015]
gi|295427779|ref|ZP_06820411.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297591263|ref|ZP_06949901.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus MN8]
gi|384547535|ref|YP_005736788.1| hypothetical protein SAOV_1294 [Staphylococcus aureus subsp. aureus
ED133]
gi|384550049|ref|YP_005739301.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus JKD6159]
gi|384867822|ref|YP_005748018.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus TCH60]
gi|386830827|ref|YP_006237481.1| hypothetical protein SAEMRSA15_11270 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|387780400|ref|YP_005755198.1| radical SAM superfamily protein [Staphylococcus aureus subsp.
aureus LGA251]
gi|415683881|ref|ZP_11449083.1| hypothetical protein CGSSa00_05748 [Staphylococcus aureus subsp.
aureus CGS00]
gi|416839343|ref|ZP_11902737.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus O11]
gi|417797911|ref|ZP_12445097.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21310]
gi|417887012|ref|ZP_12531151.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21195]
gi|417891742|ref|ZP_12535799.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21200]
gi|417896062|ref|ZP_12540029.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21235]
gi|417903382|ref|ZP_12547229.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21269]
gi|418282932|ref|ZP_12895689.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21202]
gi|418314153|ref|ZP_12925632.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21334]
gi|418566690|ref|ZP_13131063.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21264]
gi|418582126|ref|ZP_13146204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418597696|ref|ZP_13161218.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21342]
gi|418603172|ref|ZP_13166563.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21345]
gi|418646140|ref|ZP_13208255.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-55]
gi|418655440|ref|ZP_13217300.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-105]
gi|418875228|ref|ZP_13429488.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC93]
gi|418889085|ref|ZP_13443221.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1524]
gi|418891925|ref|ZP_13446040.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418897830|ref|ZP_13451900.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418900700|ref|ZP_13454757.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418909003|ref|ZP_13463006.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG149]
gi|418917087|ref|ZP_13471046.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418922874|ref|ZP_13476791.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418982205|ref|ZP_13529913.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418985874|ref|ZP_13533560.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1500]
gi|418993913|ref|ZP_13541549.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG290]
gi|421150244|ref|ZP_15609900.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus str. Newbould 305]
gi|81651243|sp|Q6GHE3.1|MIAB_STAAR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|49241584|emb|CAG40270.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|253724321|gb|EES93050.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257271803|gb|EEV03941.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257274848|gb|EEV06335.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278768|gb|EEV09387.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281493|gb|EEV11630.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus E1410]
gi|257284524|gb|EEV14644.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus M876]
gi|257845896|gb|EEV69925.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9635]
gi|282314086|gb|EFB44478.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus C101]
gi|282316801|gb|EFB47175.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus C427]
gi|282322137|gb|EFB52461.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus M899]
gi|282325469|gb|EFB55778.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327648|gb|EFB57931.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282330902|gb|EFB60416.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595465|gb|EFC00429.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus C160]
gi|283790184|gb|EFC29001.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus A017934/97]
gi|290920721|gb|EFD97784.1| tRNA-I(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus M1015]
gi|291096106|gb|EFE26367.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 58-424]
gi|291467007|gb|EFF09525.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus M809]
gi|295128137|gb|EFG57771.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297576149|gb|EFH94865.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus MN8]
gi|298694584|gb|ADI97806.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED133]
gi|302332898|gb|ADL23091.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus JKD6159]
gi|312438327|gb|ADQ77398.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus TCH60]
gi|315194179|gb|EFU24572.1| hypothetical protein CGSSa00_05748 [Staphylococcus aureus subsp.
aureus CGS00]
gi|323441074|gb|EGA98781.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus O11]
gi|334277033|gb|EGL95272.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21310]
gi|341840963|gb|EGS82435.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21235]
gi|341850003|gb|EGS91136.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21269]
gi|341851028|gb|EGS91957.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21200]
gi|341858434|gb|EGS99224.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21195]
gi|344177502|emb|CCC87971.1| radical SAM superfamily protein [Staphylococcus aureus subsp.
aureus LGA251]
gi|365168529|gb|EHM59867.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21202]
gi|365234291|gb|EHM75229.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21334]
gi|371969960|gb|EHO87398.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21264]
gi|374393758|gb|EHQ65062.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21342]
gi|374393901|gb|EHQ65204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21345]
gi|375021606|gb|EHS15102.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-55]
gi|375037156|gb|EHS30209.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-105]
gi|377703168|gb|EHT27484.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377704486|gb|EHT28795.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377705692|gb|EHT29996.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377710536|gb|EHT34774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377731257|gb|EHT55314.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377736197|gb|EHT60227.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377745963|gb|EHT69938.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG290]
gi|377750261|gb|EHT74199.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377754041|gb|EHT77951.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG149]
gi|377754595|gb|EHT78504.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1524]
gi|377760865|gb|EHT84741.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|377770288|gb|EHT94050.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC93]
gi|385196219|emb|CCG15841.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|394329634|gb|EJE55736.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus str. Newbould 305]
Length = 514
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|423483363|ref|ZP_17460053.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-2]
gi|401140914|gb|EJQ48469.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-2]
Length = 560
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 119 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 178
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 179 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 238
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 239 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 298
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 299 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 357
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL ++ + + + +H+PVQSGS +L +
Sbjct: 358 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKI 389
>gi|319778544|ref|YP_004129457.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9]
gi|317108568|gb|ADU91314.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9]
gi|399114834|emb|CCG17630.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
equigenitalis 14/56]
Length = 469
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 145/287 (50%), Gaps = 25/287 (8%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMD 115
G + +Y+KTFGC N+ DSE MA L A G LTDN E+AD+ L+NTC+++ +Q +
Sbjct: 29 GAKKLYIKTFGCQMNEYDSEKMADVLHAEKGLELTDNPEDADVILLNTCSIREKAQEKVF 88
Query: 116 TLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
+ + + KK + V GCV +G+ L+ V I+ G Q + R+ E++E+ K
Sbjct: 89 SDLGRINLLKKKKPELLIGVGGCVASQEGATILQRAPYVDIIFGPQTLHRLPELIEQ--K 146
Query: 168 GHEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
R P ++ LP R N + I GC C+YC + RG S +
Sbjct: 147 ESSGRAQVDVSFPEIEKFDHLPPARINGPTAFVSIMEGCSKYCSYCVVPYTRGEEISRPL 206
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
E ++ V + GVKE+ L ++ AY +G + I A++ EL D + RI
Sbjct: 207 EDVLIEVADLADQGVKEINLLGQNVNAYRGTVGEDGEIADFAMLLELIHDIPGVERIR-- 264
Query: 284 NPPFILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSVSQK 325
+I H KE+ + L + P + FLH+PVQ+GSD VL+ ++
Sbjct: 265 ---YITSHPKEMTKRLIEAHAKLPKLVPFLHLPVQAGSDRVLAAMKR 308
>gi|417653280|ref|ZP_12303014.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21193]
gi|417797253|ref|ZP_12444451.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21305]
gi|448743364|ref|ZP_21725273.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
KT/Y21]
gi|329733662|gb|EGG69990.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21193]
gi|334267301|gb|EGL85765.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21305]
gi|445563293|gb|ELY19455.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
KT/Y21]
Length = 514
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILKALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|402775944|ref|YP_006629888.1| tRNA modification protein [Bacillus subtilis QB928]
gi|418033152|ref|ZP_12671629.1| hypothetical protein BSSC8_25730 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351469300|gb|EHA29476.1| hypothetical protein BSSC8_25730 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402481125|gb|AFQ57634.1| Enzyme for ms(2)i(6)A formation for tRNAmodification [Bacillus
subtilis QB928]
Length = 520
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 138/274 (50%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 79 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 138
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 139 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 198
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 199 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 258
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 259 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 317
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS VL +
Sbjct: 318 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKL 349
>gi|345019810|ref|ZP_08783423.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Ornithinibacillus scapharcae TW25]
Length = 525
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 139/275 (50%), Gaps = 15/275 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ D+E MAG LS GY T + EAD+ L+NTC ++ +++ + I K
Sbjct: 86 IRTYGCQMNEHDTEVMAGILSEMGYESTTETSEADLILLNTCAIRENAENKVFGEIGHLK 145
Query: 123 SAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
K KP L V GC+ Q R +K+ + + +V G I R+ +V+E + G E
Sbjct: 146 PLKTEKPDLILGVCGCMSQEESVVDRIMKKHQHIDLVFGTHNIHRLPNLVQEAMFGKEQV 205
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ +LPK R+ K + I GC CTYC RG S + ++ +
Sbjct: 206 VEVWSKEGDIIENLPKARKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSRRPDDIIQEI 265
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + A+G +EV L ++ AYG+D ++ ++ ++ +R ++P +
Sbjct: 266 RHLAAEGYQEVTLLGQNVNAYGKDFE-DIDYRFGDLMDDIRKIDIPRIRFTTSHPRDFDD 324
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
HL E+ + + + +H+PVQSGS VL + +
Sbjct: 325 HLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMNR 357
>gi|57651862|ref|YP_186168.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus COL]
gi|87160782|ref|YP_493882.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|88195002|ref|YP_499802.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus NCTC 8325]
gi|151221413|ref|YP_001332235.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus str. Newman]
gi|161509458|ref|YP_001575117.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|221142526|ref|ZP_03567019.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|258452591|ref|ZP_05700597.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A5948]
gi|262048179|ref|ZP_06021066.1| hypothetical protein SAD30_1955 [Staphylococcus aureus D30]
gi|262051352|ref|ZP_06023575.1| hypothetical protein SA930_2074 [Staphylococcus aureus 930918-3]
gi|282920536|ref|ZP_06328257.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9765]
gi|284024285|ref|ZP_06378683.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus 132]
gi|294848288|ref|ZP_06789035.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9754]
gi|304381143|ref|ZP_07363796.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|379014483|ref|YP_005290719.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus VC40]
gi|384861885|ref|YP_005744605.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|384869827|ref|YP_005752541.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Staphylococcus aureus subsp. aureus T0131]
gi|415686484|ref|ZP_11450573.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
CGS01]
gi|417649432|ref|ZP_12299231.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21189]
gi|418281421|ref|ZP_12894232.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21178]
gi|418284601|ref|ZP_12897318.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21209]
gi|418317632|ref|ZP_12929048.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21232]
gi|418570835|ref|ZP_13135096.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21283]
gi|418579126|ref|ZP_13143221.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418642893|ref|ZP_13205079.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-24]
gi|418648229|ref|ZP_13210274.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-88]
gi|418649345|ref|ZP_13211373.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-91]
gi|418660127|ref|ZP_13221769.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-111]
gi|418873503|ref|ZP_13427798.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-125]
gi|418903505|ref|ZP_13457546.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418906228|ref|ZP_13460255.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418911899|ref|ZP_13465882.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG547]
gi|418925529|ref|ZP_13479431.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418928552|ref|ZP_13482438.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418947382|ref|ZP_13499756.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-157]
gi|418955535|ref|ZP_13507475.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-189]
gi|422742757|ref|ZP_16796757.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus MRSA177]
gi|424785125|ref|ZP_18211928.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus aureus CN79]
gi|440706013|ref|ZP_20886762.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21282]
gi|440734738|ref|ZP_20914350.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|81694614|sp|Q5HGD9.1|MIAB_STAAC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123407056|sp|Q2FZ02.1|MIAB_STAA8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123486136|sp|Q2FHE6.1|MIAB_STAA3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891005|sp|A6QGJ1.1|MIAB_STAAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891006|sp|A8Z1W3.1|MIAB_STAAT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|57286048|gb|AAW38142.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus COL]
gi|87126756|gb|ABD21270.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|87202560|gb|ABD30370.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|150374213|dbj|BAF67473.1| tRNA-i(6)A37 modification enzyme MiaB [Staphylococcus aureus subsp.
aureus str. Newman]
gi|160368267|gb|ABX29238.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257859809|gb|EEV82651.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A5948]
gi|259160727|gb|EEW45748.1| hypothetical protein SA930_2074 [Staphylococcus aureus 930918-3]
gi|259163745|gb|EEW48300.1| hypothetical protein SAD30_1955 [Staphylococcus aureus D30]
gi|282594198|gb|EFB99185.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9765]
gi|294825088|gb|EFG41510.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9754]
gi|302751114|gb|ADL65291.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|304340126|gb|EFM06067.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|315198534|gb|EFU28863.1| 2-methylthioadenine synthetase [Staphylococcus aureus subsp. aureus
CGS01]
gi|320143843|gb|EFW35615.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus MRSA177]
gi|329313962|gb|AEB88375.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus T0131]
gi|329727801|gb|EGG64252.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21189]
gi|365165243|gb|EHM57071.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21178]
gi|365173149|gb|EHM63736.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21209]
gi|365244900|gb|EHM85552.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21232]
gi|371983015|gb|EHP00163.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21283]
gi|374363180|gb|AEZ37285.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus VC40]
gi|375016006|gb|EHS09650.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-24]
gi|375026646|gb|EHS20025.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-88]
gi|375029718|gb|EHS23043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-91]
gi|375033017|gb|EHS26228.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-111]
gi|375366040|gb|EHS70052.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-125]
gi|375371018|gb|EHS74810.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-189]
gi|375376125|gb|EHS79674.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-157]
gi|377697153|gb|EHT21508.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377725277|gb|EHT49392.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG547]
gi|377738464|gb|EHT62473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377742520|gb|EHT66505.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377744598|gb|EHT68575.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377765528|gb|EHT89378.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|421956535|gb|EKU08864.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus aureus CN79]
gi|436431766|gb|ELP29119.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|436507544|gb|ELP43224.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21282]
Length = 514
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|336437008|ref|ZP_08616717.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336006142|gb|EGN36178.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 441
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 135/269 (50%), Gaps = 17/269 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV-----KSPSQSAMDTLIA 119
+ GC N +D+E M G L++ GY +TD+ EADI +INTC + Q+ ++
Sbjct: 7 SLGCDKNLTDTEVMLGLLASRGYEMTDDECEADIIVINTCCFIHDAKEESIQNILEMAEY 66
Query: 120 KCKSAKKPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHE-VRLLH 175
K + + K L+V GC+ Q R L E+ V +++G D++++ V+E LKG VR+
Sbjct: 67 KKEGSLKALIVTGCLAQRYRQEILDEIPEVDAVLGTTAYDQILDAVDEALKGQNSVRMED 126
Query: 176 RKKLPALDLPK-VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
++LP ++ + V + I GC CTYC RG S +E L+ +
Sbjct: 127 LQRLPKVEAKRQVTTGGHFAYMKIAEGCDKHCTYCIIPKIRGRFRSRPMEELIREAEELA 186
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
GVKE+ L +++T YG+D+ +LP+LL + G +R+ P I + L
Sbjct: 187 EQGVKELILVAQETTLYGKDLYGEKSLPVLLRKLC---KISGLRWIRVLYCYPEEITDEL 243
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ + P + +L +P+Q +D +L
Sbjct: 244 IRVMK--EEPKICHYLDLPIQHANDDILK 270
>gi|75760978|ref|ZP_00740984.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74491542|gb|EAO54752.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 515
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 83 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 142
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 143 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 202
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 203 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 262
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 263 EIRHLAANGYKEITLLGQNVNAYGKDFE-DVEYGLGDLMDELRKVDIARIRFTTSHPRDF 321
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 322 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 353
>gi|379021003|ref|YP_005297665.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus aureus subsp.
aureus M013]
gi|386728979|ref|YP_006195362.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus subsp.
aureus 71193]
gi|387602570|ref|YP_005734091.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ST398]
gi|404478634|ref|YP_006710064.1| hypothetical protein C248_1326 [Staphylococcus aureus 08BA02176]
gi|418310560|ref|ZP_12922099.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21331]
gi|418950186|ref|ZP_13502382.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-160]
gi|418980640|ref|ZP_13528416.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus subsp.
aureus DR10]
gi|283470508|emb|CAQ49719.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus ST398]
gi|359830312|gb|AEV78290.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus aureus subsp.
aureus M013]
gi|365236612|gb|EHM77499.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21331]
gi|375377559|gb|EHS81018.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus IS-160]
gi|379991615|gb|EIA13084.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus subsp.
aureus DR10]
gi|384230272|gb|AFH69519.1| tRNA 2-methylthioadenosine synthase [Staphylococcus aureus subsp.
aureus 71193]
gi|404440123|gb|AFR73316.1| hypothetical protein C248_1326 [Staphylococcus aureus 08BA02176]
Length = 514
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|449094387|ref|YP_007426878.1| putative conserved AdoMet radical enzyme for tRNA modification
[Bacillus subtilis XF-1]
gi|449028302|gb|AGE63541.1| putative conserved AdoMet radical enzyme for tRNA modification
[Bacillus subtilis XF-1]
Length = 520
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 138/274 (50%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 79 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 138
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 139 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 198
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 199 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 258
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 259 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 317
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS VL +
Sbjct: 318 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKL 349
>gi|357058862|ref|ZP_09119708.1| hypothetical protein HMPREF9334_01425 [Selenomonas infelix ATCC
43532]
gi|355373208|gb|EHG20529.1| hypothetical protein HMPREF9334_01425 [Selenomonas infelix ATCC
43532]
Length = 437
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 130/271 (47%), Gaps = 14/271 (5%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL GY T+ E AD+ LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNIADAERMEGQLQGAGYERTEEMETADVILINTCCVRETAEDKVYGKIGEIKKIK 69
Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 175
+ +AGC+ Q D ++ + V G ++ + +V E H V +
Sbjct: 70 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELARIVAEIEAEHSPVVDVTL 129
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K A +LP R KF +PI GC CTYC + RG S E +V VR +A
Sbjct: 130 ADKTIAENLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEIVAEVRRAVA 189
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G EV L ++ +YG+D L +V E+ +G +R ++P I + L +
Sbjct: 190 EGYTEVTLLGQNVNSYGKDHKQADFADLLRMVDEV--EGIRRVRFMTSHPKDISDKLIDT 247
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSVSQKI 326
+ +H C + +H+PVQ GS+ +L ++
Sbjct: 248 IKNGQHICEH--IHLPVQYGSNRILKAMNRV 276
>gi|418427428|ref|ZP_13000440.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS2]
gi|387719015|gb|EIK06971.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus aureus subsp. aureus VRS2]
Length = 514
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|428205367|ref|YP_007089720.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chroococcidiopsis
thermalis PCC 7203]
gi|428007288|gb|AFY85851.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chroococcidiopsis
thermalis PCC 7203]
Length = 454
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 143/278 (51%), Gaps = 26/278 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ EA + L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNEASLLLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ +VVAGCV Q G L+ + + +V G Q +R+ E++E+ G++V
Sbjct: 69 AKRKQEQADLTIVVAGCVAQQEGETLLRRVPEIDLVMGPQHANRLEELLEQVFDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIKAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G +L L + + V ++P G LR +
Sbjct: 187 ELGKQGYKEITLLGQNIDAYGRDLPGTTPEGRHLHTLTDLLYYVHDVP--GVDRLRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+P + E L + AE+ P V H+P QSG + VL
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVL 279
>gi|417901652|ref|ZP_12545528.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21266]
gi|341845491|gb|EGS86693.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21266]
Length = 514
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|398791906|ref|ZP_10552604.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pantoea sp. YR343]
gi|398214038|gb|EJN00621.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pantoea sp. YR343]
Length = 474
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 146/282 (51%), Gaps = 18/282 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LT+ +EEAD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEEAEEADVLLLNTCSIREKAQEKVFA 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ + K K + V GCV +G R + V IV G Q + R+ E++ T++G
Sbjct: 62 LLGRWKKLKATNPDLIIGVGGCVASQEGERLRQRASYVDIVFGPQTLHRLPEMI-NTVRG 120
Query: 169 HE--VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+ V + ++ D LP+ R + + I GC CT+C + RG S +
Sbjct: 121 SKSPVVDISFPEIEKFDRLPEPRADGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSDD 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
++ + + A GV+EV L ++ AY G ++ + DG +R ++
Sbjct: 181 ILLEIAQLAAQGVREVNLLGQNVNAYRGATFDGDICTFAELLRLVAAIDGIDRIRFTTSH 240
Query: 285 PPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
P +E +I EV R P + SFLH+PVQSGSD +L++ ++
Sbjct: 241 P---IEFTDDIIEVYRDTPELASFLHLPVQSGSDRILTLMKR 279
>gi|418559142|ref|ZP_13123688.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21252]
gi|371975433|gb|EHO92727.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21252]
Length = 514
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|423528366|ref|ZP_17504811.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB1-1]
gi|402452029|gb|EJV83848.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB1-1]
Length = 509
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DVKYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|303232055|ref|ZP_07318758.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-049-V-Sch6]
gi|302513161|gb|EFL55200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-049-V-Sch6]
Length = 438
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 140/275 (50%), Gaps = 20/275 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL GY TD+ E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLETVGYIPTDDVELADLILLNTCAVRETAETKVFGRI 61
Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K K L++A GC+ Q ++ K + IV G I + E++ E + H+
Sbjct: 62 GELKRLKQKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHK 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQINVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ + + I + R + + LH+P+QSGSD +L
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRIL 269
>gi|218898872|ref|YP_002447283.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus G9842]
gi|228902275|ref|ZP_04066435.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
4222]
gi|228909596|ref|ZP_04073419.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
200]
gi|228966715|ref|ZP_04127759.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|402558900|ref|YP_006601624.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-771]
gi|423359242|ref|ZP_17336745.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD022]
gi|423561820|ref|ZP_17538096.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A1]
gi|434376830|ref|YP_006611474.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-789]
gi|229890420|sp|B7ITM4.1|MIAB_BACC2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218543596|gb|ACK95990.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9842]
gi|228792814|gb|EEM40372.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228849885|gb|EEM94716.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
200]
gi|228857390|gb|EEN01890.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
4222]
gi|401085114|gb|EJP93360.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD022]
gi|401202077|gb|EJR08942.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A1]
gi|401787552|gb|AFQ13591.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-771]
gi|401875387|gb|AFQ27554.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-789]
Length = 509
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DVEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|448732069|ref|ZP_21714352.1| MiaB-like tRNA modifying enzyme [Halococcus salifodinae DSM 8989]
gi|445805347|gb|EMA55570.1| MiaB-like tRNA modifying enzyme [Halococcus salifodinae DSM 8989]
Length = 414
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 141/265 (53%), Gaps = 23/265 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++T+GC+ N+ +S + +L G+ D + AD+ ++NTCTV +++ M +
Sbjct: 3 SYHLETYGCTANRGESRAIERRLRDGGHHPVDGPKAADVAILNTCTVVETTETNMLSRAR 62
Query: 120 KCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ +S LVV GC+ QG + +L+ ++ G ++ VV L G E
Sbjct: 63 ELESETADLVVTGCMALAQGE-EFADLD-ATVCGWDEVPEVV------LNG-ECPTATPG 113
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TKHA G + S VE V + R ++ G
Sbjct: 114 TEPILD-------GKVGILPIARGCMSDCSYCITKHATGKIDSPPVEENVEKARALVHAG 166
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G L LL+ I A DG +R+GM NP + +E+A
Sbjct: 167 AKEIRVTGQDTGVYGWDDGERKLHELLDRICA---IDGDFRVRVGMANPKGVHGIREELA 223
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVL 320
+V + +Y+FLH PVQSGSD VL
Sbjct: 224 DVFAANEKLYNFLHAPVQSGSDDVL 248
>gi|387142900|ref|YP_005731293.1| radical SAM superfamily protein [Staphylococcus aureus subsp.
aureus TW20]
gi|269940783|emb|CBI49165.1| radical SAM superfamily protein [Staphylococcus aureus subsp.
aureus TW20]
Length = 514
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVLSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|423385277|ref|ZP_17362533.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-2]
gi|401635333|gb|EJS53088.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-2]
Length = 509
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DVKYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|423598916|ref|ZP_17574916.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD078]
gi|401237186|gb|EJR43643.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD078]
Length = 509
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 141/278 (50%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
HL ++ ++ H +H+PVQSGS +L +
Sbjct: 307 DNHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>gi|296330914|ref|ZP_06873389.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305674432|ref|YP_003866104.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii str. W23]
gi|350266015|ref|YP_004877322.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|296151919|gb|EFG92793.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305412676|gb|ADM37795.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii str. W23]
gi|349598902|gb|AEP86690.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 509
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 138/274 (50%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS VL +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKL 338
>gi|292669800|ref|ZP_06603226.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
43541]
gi|292648597|gb|EFF66569.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
43541]
Length = 444
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 129/270 (47%), Gaps = 14/270 (5%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL A GYA T+ + ADI LINTC V+ ++ + I + K K
Sbjct: 17 YGCQMNIADAERMEGQLQAAGYARTEETANADIILINTCCVRETAEDKVYGKIGEVKKIK 76
Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 175
+ +AGC+ Q D ++ + V G ++ + ++ E H V +
Sbjct: 77 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIRAEHSPVVDVAL 136
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
A DLP R KF +PI GC CTYC + RG S E +V VR +A
Sbjct: 137 SDSEIAEDLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEVVAEVRRAVA 196
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G +EV L ++ +YG+D L +V E+ +G +R ++P I + L +
Sbjct: 197 EGYREVTLLGQNVNSYGKDHKEADFADLLRMVDEV--EGIRRVRFMTSHPKDISDKLIDT 254
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ H C + +H+PVQ GS +L +
Sbjct: 255 IKSGAHICEH--IHLPVQYGSSRLLKAMNR 282
>gi|402302017|ref|ZP_10821137.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. FOBRC9]
gi|400381004|gb|EJP33808.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. FOBRC9]
Length = 436
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 139/284 (48%), Gaps = 31/284 (10%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL + GY T+ + +AD+ LINTC V+ ++ + I + K K
Sbjct: 11 YGCQMNIADAERMEGQLQSVGYTRTEETADADVILINTCCVRESAEDKVYGKIGEIKKLK 70
Query: 126 K--PLVV---AGCVPQGSRD--LKELEGVSIV----GVQQIDRVVEVVE-------ETLK 167
+ P ++ AGC+ Q D ++ + V VQ++ R++ + +T+
Sbjct: 71 ERNPYLIFGIAGCMAQKEGDNLMQRAPHIDFVLGTGKVQELTRIIAEIRAEHSPVVDTVI 130
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
G+ + A +LP R KF +PI GC CT+C + RG S T E +V
Sbjct: 131 GNTI---------AENLPIARGGKFSAWVPIMYGCNNFCTFCIVPYVRGRERSRTPEDVV 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR +A+G EV L ++ +YG+D L +V E+ +G +R ++P
Sbjct: 182 AEVRRAVAEGYTEVTLLGQNVNSYGKDHKAADFADLLRMVDEV--EGIRRVRFMTSHPKD 239
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKS 331
I + L + RH C + +H+PVQ GS+ +L ++ +S
Sbjct: 240 ISDKLIDTIRNGRHLCEH--IHLPVQYGSNRILKAMNRVYTVES 281
>gi|423558664|ref|ZP_17534966.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MC67]
gi|401191932|gb|EJQ98954.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MC67]
Length = 509
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 141/278 (50%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y +T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYTRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL ++ ++ H +H+PVQSGS +L +
Sbjct: 307 DDHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>gi|289550913|ref|YP_003471817.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus lugdunensis
HKU09-01]
gi|315658416|ref|ZP_07911288.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
lugdunensis M23590]
gi|385784541|ref|YP_005760714.1| hypothetical protein SLUG_16020 [Staphylococcus lugdunensis
N920143]
gi|418414214|ref|ZP_12987430.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|418635639|ref|ZP_13198010.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
lugdunensis VCU139]
gi|289180445|gb|ADC87690.1| tRNA-i(6)A37 methylthiotransferase [Staphylococcus lugdunensis
HKU09-01]
gi|315496745|gb|EFU85068.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus
lugdunensis M23590]
gi|339894797|emb|CCB54093.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
gi|374841668|gb|EHS05128.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
lugdunensis VCU139]
gi|410877852|gb|EKS25744.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 514
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 139/279 (49%), Gaps = 23/279 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY T + +EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILEALGYQSTSDIQEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYMSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVDVWSKEGDIIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVA-ELPPDGSTMLRIGMT 283
V+ + +G +E+ L ++ +YG+ DI L LL AI ++P +R +
Sbjct: 249 AEVKELAREGYQEITLLGQNVNSYGKDIEDIDYELGDLLEAISKIDIP-----RVRFTTS 303
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+P + + ++ + + + +H+PVQSG++AVL +
Sbjct: 304 HPWDFTDRMIQV--IAQGGNIVPHIHLPVQSGNNAVLKI 340
>gi|443632630|ref|ZP_21116809.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
gi|443347453|gb|ELS61511.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
Length = 509
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 138/274 (50%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS VL +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKL 338
>gi|420169829|ref|ZP_14676407.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM070]
gi|420206387|ref|ZP_14711897.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM008]
gi|420209429|ref|ZP_14714866.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM003]
gi|394243129|gb|EJD88503.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM070]
gi|394278226|gb|EJE22543.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM008]
gi|394278876|gb|EJE23188.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
epidermidis NIHLM003]
Length = 514
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 136/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + I + + + +H+PVQSG++ VL +
Sbjct: 308 FTDRM--IKVIAKGGNIVPHIHLPVQSGNNQVLKI 340
>gi|229061375|ref|ZP_04198721.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
gi|228717914|gb|EEL69560.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
Length = 509
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 141/278 (50%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPALIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
HL ++ ++ H +H+PVQSGS +L +
Sbjct: 307 DNHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>gi|423488895|ref|ZP_17465577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BtB2-4]
gi|423494620|ref|ZP_17471264.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER057]
gi|423498589|ref|ZP_17475206.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER074]
gi|401151681|gb|EJQ59127.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER057]
gi|401159247|gb|EJQ66632.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER074]
gi|402433250|gb|EJV65304.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BtB2-4]
Length = 509
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 141/278 (50%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
HL ++ ++ H +H+PVQSGS +L +
Sbjct: 307 DNHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>gi|423452926|ref|ZP_17429779.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X1-1]
gi|423522397|ref|ZP_17498870.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA4-10]
gi|401139485|gb|EJQ47047.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X1-1]
gi|401175091|gb|EJQ82294.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA4-10]
Length = 509
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 142/278 (51%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G +E+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYREITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL ++ ++ H +H+PVQSGS +L +
Sbjct: 307 DDHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>gi|313896795|ref|ZP_07830343.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
taxon 137 str. F0430]
gi|320529997|ref|ZP_08031073.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas artemidis
F0399]
gi|312974712|gb|EFR40179.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
taxon 137 str. F0430]
gi|320137794|gb|EFW29700.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas artemidis
F0399]
Length = 436
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 137/284 (48%), Gaps = 31/284 (10%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL + GY T+ + +AD+ LINTC V+ ++ + I + K K
Sbjct: 11 YGCQMNIADAERMEGQLQSVGYTRTEETADADVILINTCCVRESAEDKVYGKIGEIKKLK 70
Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV----GVQQIDRVVEVVE-------ETLK 167
+ +AGC+ Q D ++ + V VQ++ R++ + +T+
Sbjct: 71 ERNPHLIFGIAGCMAQKEGDNLMQRAPHIDFVLGTGKVQELTRIIAEIRAEHSPVVDTVI 130
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
G+ + A +LP R KF +PI GC CT+C + RG S T E +V
Sbjct: 131 GNTI---------AENLPIARGGKFSAWVPIMYGCNNFCTFCIVPYVRGRERSRTPEDVV 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR +A+G EV L ++ +YG+D L +V E+ +G +R ++P
Sbjct: 182 AEVRRAVAEGYTEVTLLGQNVNSYGKDHKAADFADLLRMVDEV--EGIRRVRFMTSHPKD 239
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKS 331
I + L + RH C + +H+PVQ GS+ +L ++ +S
Sbjct: 240 ISDKLIDTIRNGRHLCEH--IHLPVQYGSNRILKAMNRVYTVES 281
>gi|423669348|ref|ZP_17644377.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM034]
gi|423674524|ref|ZP_17649463.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM062]
gi|401298475|gb|EJS04075.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM034]
gi|401310075|gb|EJS15408.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM062]
Length = 509
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G +E+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYREITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL ++ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|319649479|ref|ZP_08003635.1| YmcB protein [Bacillus sp. 2_A_57_CT2]
gi|317398641|gb|EFV79323.1| YmcB protein [Bacillus sp. 2_A_57_CT2]
Length = 515
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 135/274 (49%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY T++ E+A++ L+NTC ++ +++ + +
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFLGLGYEHTESVEDANVILLNTCAIRENAENKVFGELGH 130
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K KK + V GC+ Q ++ LK V I G I R+ +++E E
Sbjct: 131 LKHLKKENPDLLIGVCGCMSQEESVVNKILKTYNQVDMIFGTHNIHRLPNILQEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 191 MVIEVWSKEGDVIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G +E+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 251 EVRQLAAQGYQEITLLGQNVNAYGKDFE-DMNYGLGDLMDEMRKIDIPRVRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS VL +
Sbjct: 310 DDHLIEV--LAKGGNLVEHIHLPVQSGSTDVLKI 341
>gi|229012956|ref|ZP_04170121.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
gi|423661388|ref|ZP_17636557.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM022]
gi|228748210|gb|EEL98070.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
gi|401301429|gb|EJS07018.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM022]
Length = 509
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 141/278 (50%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
HL ++ ++ H +H+PVQSGS +L +
Sbjct: 307 DNHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>gi|423511805|ref|ZP_17488336.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-1]
gi|402450066|gb|EJV81900.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-1]
Length = 509
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 141/278 (50%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
HL ++ ++ H +H+PVQSGS +L +
Sbjct: 307 DNHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>gi|152976138|ref|YP_001375655.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cytotoxicus NVH 391-98]
gi|229890423|sp|A7GRA2.1|MIAB_BACCN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|152024890|gb|ABS22660.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cytotoxicus NVH
391-98]
Length = 509
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 140/278 (50%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T +E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFTTEDADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
K K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + K
Sbjct: 128 LKPLKQKNPDLLIGVCGCMSQEESVVNKIMQKHQHVDMVFGTHNIHRLPYILKDAMFSKA 187
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EVRHLAANGYKEITLLGQNVNAYGKDFD-DLEYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ ++ H +H+PVQSGS +L +
Sbjct: 307 DDHLIEVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>gi|56751740|ref|YP_172441.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
elongatus PCC 6301]
gi|81301183|ref|YP_401391.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
elongatus PCC 7942]
gi|81561774|sp|Q5N199.1|MIAB_SYNP6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123755327|sp|Q31KL5.1|MIAB_SYNE7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|56686699|dbj|BAD79921.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81170064|gb|ABB58404.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus elongatus
PCC 7942]
Length = 452
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 139/276 (50%), Gaps = 22/276 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY ++ + +AD+ L NTCT++ ++ + + + +
Sbjct: 8 HITTFGCQMNKADSERMAGILEDLGYIWSEEANDADLVLYNTCTIRDNAEQKVYSYLGRQ 67
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G L+ + + +V G Q +R+ +++ + G +V
Sbjct: 68 AERKRQQPDLTLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLADLLAQVEAGSQVVA 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ A D+ + RR+ + +NV GC CTYC + RG S ++ +
Sbjct: 128 TEEVEI-AEDITQPRRDSTITAW-VNVIYGCNERCTYCVVPNVRGREQSREPAAIRAEIE 185
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ A G +E+ L ++ AYGRD+ G +L L + + G +R ++P
Sbjct: 186 QLAAQGYREITLLGQNIDAYGRDLPGSTPEGRHLHTLTDLLYTIHDVPGIERIRFATSHP 245
Query: 286 PFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ E L + AE+ P V + H+P QSG + VL
Sbjct: 246 RYFTERLIRACAEL---PKVCEYFHIPFQSGDNDVL 278
>gi|423367759|ref|ZP_17345191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD142]
gi|401083412|gb|EJP91670.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD142]
Length = 510
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 141/278 (50%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
HL ++ ++ H +H+PVQSGS +L +
Sbjct: 307 DNHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>gi|229134580|ref|ZP_04263390.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
gi|229168512|ref|ZP_04296235.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
gi|423518409|ref|ZP_17494890.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-4]
gi|423592285|ref|ZP_17568316.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD048]
gi|228614918|gb|EEK72020.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
gi|228648841|gb|EEL04866.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
gi|401161136|gb|EJQ68504.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-4]
gi|401230527|gb|EJR37034.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD048]
Length = 509
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 142/278 (51%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G +E+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYREITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL ++ ++ H +H+PVQSGS +L +
Sbjct: 307 DDHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>gi|39998295|ref|NP_954246.1| 30S ribosomal protein S12 methylthiotransferase [Geobacter
sulfurreducens PCA]
gi|409913646|ref|YP_006892111.1| 30S ribosomal protein S12 methylthiotransferase [Geobacter
sulfurreducens KN400]
gi|81701038|sp|Q747R0.1|RIMO_GEOSL RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
Short=S12 MTTase; Short=S12 methylthiotransferase;
AltName: Full=Ribosome maturation factor RimO
gi|39985241|gb|AAR36596.1| ribosomal protein S12 methylthiotransferase [Geobacter
sulfurreducens PCA]
gi|298507231|gb|ADI85954.1| ribosomal protein S12 methylthiotransferase [Geobacter
sulfurreducens KN400]
Length = 447
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 137/276 (49%), Gaps = 20/276 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTL 117
E + M + GC N D+E M G+L+ Y +T + EADI ++NTC+ +K Q ++DT+
Sbjct: 6 EKVSMVSLGCPKNLVDAEVMLGRLAKDRYEITTDEREADIIIVNTCSFIKEAKQESIDTI 65
Query: 118 IAKCKSAK----KPLVVAGCVPQGSRD--LKELEGVSI-VGVQQIDRVVEVVEE-TLKGH 169
+ + + L+V GC+PQ ++ +EL V I VG R+ E++EE + +
Sbjct: 66 LDLADRKQDGRCRLLIVTGCLPQRYQEELARELPEVDIFVGTGDYPRIAEIIEEKSSRPE 125
Query: 170 EVRLLHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
++R + D R N + L I GC C+YC RG S +ES+
Sbjct: 126 QLRYIGDPNF-VFDESLTRLNSSPAYTAYLKIAEGCSNCCSYCVIPSLRGAFRSRPLESV 184
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTN 284
+ R+++A G +E+ L ++D YGRD+ +L L+ + A DG +R+
Sbjct: 185 LAEARSLVAGGAREINLIAQDITTYGRDLPGAPSLETLIRELAA---IDGLAWIRLLYAY 241
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P I + L I + P V +L +P+Q SD +L
Sbjct: 242 PDGITDGL--IQTIKNEPKVCKYLDLPIQHISDPIL 275
>gi|385787716|ref|YP_005818825.1| Putative tRNA-thiotransferase [Erwinia sp. Ejp617]
gi|310766988|gb|ADP11938.1| Putative tRNA-thiotransferase [Erwinia sp. Ejp617]
Length = 480
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 152/287 (52%), Gaps = 24/287 (8%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
P T+ +++KT+GC N+ DS MA L S GY LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 6 PMTKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKV 65
Query: 115 DTLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETL 166
L+ + K K+ + V GCV +G++ + V IV G Q + R+ E++ +
Sbjct: 66 FGLLGRWKKLKEANPDVIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMINR-V 124
Query: 167 KGHEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
+G + ++ P ++ +P+ R N + I GC CT+C + RG S
Sbjct: 125 RGTKSPVVD-VSFPEIEKFDRMPEPRANGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRP 183
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLR 279
+ ++ V + A GV+EV L ++ AY D G+ L +VA + DG +R
Sbjct: 184 ADDVLFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVATI--DGIDRIR 241
Query: 280 IGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
++P +E +I EV R P + SFLH+PVQSG+D +L++ ++
Sbjct: 242 FTTSHP---IEFTDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKR 285
>gi|37523886|ref|NP_927263.1| hypothetical protein gll4317 [Gloeobacter violaceus PCC 7421]
gi|81708224|sp|Q7NDB8.1|RIMO_GLOVI RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
Short=S12 MTTase; Short=S12 methylthiotransferase;
AltName: Full=Ribosome maturation factor RimO
gi|35214892|dbj|BAC92258.1| gll4317 [Gloeobacter violaceus PCC 7421]
Length = 437
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 114/203 (56%), Gaps = 8/203 (3%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-AMDTLI 118
TI + GC N+ D+E+M G L+ GY + + ++A+ L+NTC+ P+++ ++ TL+
Sbjct: 4 TIAVTHLGCEKNRIDTEHMLGLLAQAGYQIDSDEDKAEYVLVNTCSFIGPARTESVRTLV 63
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
+ KK +++AGC+PQ RD LKE+ E V+IVG R+VEVVE + G V L+
Sbjct: 64 NLAEQGKK-IIIAGCLPQMFRDELLKEIPEAVAIVGTGDYHRIVEVVERSRTGERVSLVS 122
Query: 176 RKKLPALD--LPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
D LP+ R + V L I GC C +C H RG S +ES+V +
Sbjct: 123 ATPTYIADEHLPRYRTTTEAVAYLKIAEGCDYRCAFCIIPHLRGDQRSRPIESIVAEAKQ 182
Query: 233 VIADGVKEVWLSSEDTGAYGRDI 255
+ ++GVKE+ L S+ + YG D+
Sbjct: 183 LASEGVKELILISQISTNYGLDL 205
>gi|313673797|ref|YP_004051908.1| tRNA-i(6)a37 thiotransferase enzyme miab [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940553|gb|ADR19745.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calditerrivibrio
nitroreducens DSM 19672]
Length = 438
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 132/271 (48%), Gaps = 17/271 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+KTFGC N+ DS+ + GY TD+ EEAD +INTC+V+ + + + I +
Sbjct: 5 VYIKTFGCQMNEYDSQRILSIFEESGYDKTDDPEEADFAVINTCSVREKPKEKVKSEIGR 64
Query: 121 CKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
K K + +AGCV Q G LKE + V +V G I ++ E + KG +
Sbjct: 65 LKRYKNSNPDFKIAIAGCVAQEDGEAILKENKSVDLVIGTDGIPKLYEAISRVEKGERLA 124
Query: 173 LLHRKKLPALDLPKVRRNKFVE-ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ +P RN V + I GC C+YC + RG S + ++ V+
Sbjct: 125 ITEFYH-DDFTVPIFNRNSSVSAFVTIMKGCDNFCSYCIVPYVRGREKSRHYKEILDEVK 183
Query: 232 TVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
++ +GV+EV ++ +YG+ D +N L + A++ DG +R ++P
Sbjct: 184 FLVDNGVREVTFLGQNVNSYGKTLDEKINFTQFL-YMAAQI--DGLNRIRFVTSHPKDFN 240
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L ++ R C Y LH+P+Q+GS+ +L
Sbjct: 241 NDLVDLIASERKICEY--LHLPLQAGSNDIL 269
>gi|451948467|ref|YP_007469062.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Desulfocapsa sulfexigens DSM 10523]
gi|451907815|gb|AGF79409.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Desulfocapsa sulfexigens DSM 10523]
Length = 448
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 145/292 (49%), Gaps = 31/292 (10%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
++T ++KTFGC N DSE MA L GY T +SE AD+ ++NTC++++ ++ + +L
Sbjct: 3 SKTFFIKTFGCQMNLRDSEIMAQLLGEKGYVETSDSETADLIILNTCSIRAKAEQKVMSL 62
Query: 118 IAKCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
+ + KK + VAGCV Q G + ++ + V +VG Q I + E+++E +
Sbjct: 63 LGVLRKQKKRNPNLKICVAGCVAQQEGQQIIERMPHVDLVVGTQNIYELAELLKEKKQQT 122
Query: 170 -EVRLLHRKKLPALDLPKVRRNK-------FVEILPINVGCLGACTYCKTKHARGHLGSY 221
L+ +PA +P + + + F + L I GC CTYC + RG S
Sbjct: 123 VATSLVDNYSIPAF-IPDLGKQESEVGPVVFKKFLTIMQGCNNYCTYCVVPYTRGREISR 181
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV-------NLPILLNAIVAELPPDG 274
++ R ++ GVKE+ L ++ +YG+ V + LL VA +P G
Sbjct: 182 QASHILQEARALVDGGVKEITLLGQNVNSYGKTNNVIEGNGSFSFSDLLRQ-VASIP--G 238
Query: 275 STMLRIGMTNPPFILEHLKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
LR +NP + + L AEV + H+PVQSGS+ +LS+ +
Sbjct: 239 LRQLRFTTSNPKDLSDDLMRCFAEV---DILCPHFHLPVQSGSNRILSLMNR 287
>gi|395233394|ref|ZP_10411634.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Enterobacter
sp. Ag1]
gi|394732121|gb|EJF31828.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Enterobacter
sp. Ag1]
Length = 474
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 145/287 (50%), Gaps = 34/287 (11%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S G+ LTDN+ EAD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDSTHGFTLTDNANEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCK--SAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEET--- 165
L+ + K AK+P V V GCV +G + + V IV G Q + R+ E++ +
Sbjct: 62 LLGRWKHIKAKRPDVIIGVGGCVASQEGKKIRQRAHYVDIVFGPQTLHRLPEMINQVRGT 121
Query: 166 ------LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+ E+ R P D P +V I+ GC CTYC + RG
Sbjct: 122 RSPVVDVSFPEIEKFDRLPEPKADGP----TAYVSIME---GCNKYCTYCVVPYTRGEEV 174
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGST 276
S + ++ + + GV+EV L ++ AY D G+ L +VA + DG
Sbjct: 175 SRPCDDILFEIAQLAEQGVREVNLLGQNVNAYRGAAYDGGICSFAELLRLVAAI--DGID 232
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSV 322
+R ++P +E +I EV R P + SFLH+P+QSG+D VL++
Sbjct: 233 RIRFTTSHP---IEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLNM 276
>gi|427723965|ref|YP_007071242.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptolyngbya sp. PCC
7376]
gi|427355685|gb|AFY38408.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptolyngbya sp. PCC
7376]
Length = 451
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 138/283 (48%), Gaps = 26/283 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY ++ EAD+ L NTCT++ ++ + + + +
Sbjct: 8 HITTFGCQMNKADSERMAGILEGMGYLFAEDPNEADLVLYNTCTIRDNAEQKVYSYLGRQ 67
Query: 122 KSAK--KP---LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K KP L+VAGCV Q G L+ + V I+G Q +R+ E++E+ G ++
Sbjct: 68 AKRKHSKPDLTLIVAGCVAQQEGESLLRRVPEVDLIMGPQHANRLQELLEQVDSGSQIVA 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ V +NV GC CTYC RG S E++ +
Sbjct: 128 TEPIHI-VEDITKPRRDSSVTAW-VNVIYGCNEHCTYCVVPGVRGTEQSRYPEAIYAEME 185
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI---------GVNLPILLNAIVAELPPDGSTMLRIGM 282
+ G KEV L ++ AYGRD+ NL LL V ++P G +R
Sbjct: 186 ELGRQGFKEVTLLGQNIDAYGRDLPGTTPEGRNKYNLTDLL-YFVHDVP--GIERIRFAT 242
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
++P + E L + L P + H+P QSG + VL ++
Sbjct: 243 SHPRYFTERLIKACHEL--PKICEHFHIPFQSGDNDVLKAMRR 283
>gi|379795659|ref|YP_005325657.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus MSHR1132]
gi|356872649|emb|CCE58988.1| (Dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
aureus subsp. aureus MSHR1132]
Length = 514
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATSDINVADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR+ + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVRQGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+D+ +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDMQYDLGDLLEAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--IAEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|26554249|ref|NP_758183.1| hypothetical protein MYPE7940 [Mycoplasma penetrans HF-2]
gi|81747516|sp|Q8EUX4.1|MIAB_MYCPE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|26454258|dbj|BAC44587.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
Length = 491
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 129/275 (46%), Gaps = 16/275 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T ++KTFGC N D+E M G L GY ++ +D+ L+NTC V+ ++S + I
Sbjct: 54 KTYHIKTFGCQSNLRDTEVMMGMLELIGYEYNEDVNTSDLVLLNTCAVREHAESKVFADI 113
Query: 119 AKCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL-- 166
KK V GC+ Q +R LK V I G + R++ ++E+ +
Sbjct: 114 GILDRIKKSNPNFIFGVCGCMAQEEAVVNRILKSNFNVDFIFGTHNVHRILNLLEQVIFE 173
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
K V + + +LP R N + + GC CTYC RG + S E +
Sbjct: 174 KNLVVEVWSHEGNVIENLPSKRTNNLKGFVNVMYGCDKFCTYCIVPMTRGKIRSRRKEDI 233
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ V +I++G KEV L ++ +YG D L N ++ ++ G +R +NP
Sbjct: 234 LDEVHQMISEGYKEVTLIGQNVNSYGIDFDNGENYLFNNLLEDVAKTGIERVRFTTSNP- 292
Query: 287 FILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVL 320
+ I + + ++P + +H+P+QSG + +L
Sbjct: 293 --WNFTRSIVDTMKKYPNIMPHIHLPIQSGDETIL 325
>gi|304438410|ref|ZP_07398350.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304368493|gb|EFM22178.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 437
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 130/281 (46%), Gaps = 34/281 (12%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL A GY T+ + +AD+ LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNVADAERMEGQLQAAGYVRTEKTADADVILINTCCVRETAEDKVYGKIGEIKKVK 69
Query: 126 KP-----LVVAGCVPQ--GSRDLKELEGVSIV----GVQQIDRVVE--------VVEETL 166
+ + GC+ Q G ++ + V VQ++ R+V VV+ L
Sbjct: 70 EHHPQLIFGITGCMAQKEGENLMRRAPHIDFVLGTGKVQELGRIVAEIAAERAPVVDVAL 129
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
H V DLP R +PI GC CTYC + RG S T E +
Sbjct: 130 DAHAVEE---------DLPIARGGTLSAWVPIMYGCNNYCTYCIVPYVRGRERSRTPEEV 180
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V VR ADG +EV L ++ +YG+D G + LL + A +G +R ++P
Sbjct: 181 VAEVRRAAADGYREVTLLGQNVNSYGKDHGQADFADLLRMVDA---VEGIRRVRFMTSHP 237
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKI 326
I + L + + H C +H+PVQ GS+ +L ++
Sbjct: 238 KDISDKLIDTIKNGTHIC--EHIHLPVQYGSNRILKAMNRV 276
>gi|146296852|ref|YP_001180623.1| MiaB family RNA modification protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410428|gb|ABP67432.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 434
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 145/282 (51%), Gaps = 29/282 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I T GC NQ +++ +A GY + D +EADI++INTCTV + S I +
Sbjct: 3 IAFYTLGCKVNQYETQAIAETFERLGYEIVDFDQEADIYVINTCTVTNVSDRKSRQAIKR 62
Query: 121 CK--SAKKPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
K S +VV GC PQ ++++++EGV IVG + +++VE V E LK +
Sbjct: 63 AKKTSPDSIVVVMGCYPQVYPQEVQKIEGVDIIVGTRDREKIVEYVTEYLK-------QK 115
Query: 177 KKLPALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVE 224
KK+ A++ + +R+ F E+ + I GC C+YC +ARG + S ++
Sbjct: 116 KKILAVN-NEYKRDTFEELKISSFNERTRAFIKIEEGCEQFCSYCIIPYARGSVVSRSLS 174
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMT 283
S++ V+ + ++G KE ++ + AYG+D+ + + L ++ E+ + +R+
Sbjct: 175 SILDEVQRLASNGYKEFVITGINISAYGKDL--DYKVTLVDVIEEISKIEKVRRIRLSSL 232
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
P + E I +++ + LH+ +QSGSD +L + +
Sbjct: 233 EPIVMKEDF--IKRLVKIEKLCHHLHLSLQSGSDKILKLMNR 272
>gi|197303019|ref|ZP_03168067.1| hypothetical protein RUMLAC_01746 [Ruminococcus lactaris ATCC
29176]
gi|197297874|gb|EDY32426.1| ribosomal protein S12 methylthiotransferase RimO [Ruminococcus
lactaris ATCC 29176]
Length = 440
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 138/274 (50%), Gaps = 19/274 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV-----KSPSQSAMD 115
I + GC N D+E M G L++ GY +TD+ +EADI +INTC + Q+ ++
Sbjct: 3 ILFISLGCDKNLVDTEVMLGLLASKGYEMTDDEQEADIIVINTCCFIHDAKEESIQNILE 62
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVR 172
K + K L+V GC+ + +D L+E+ V ++G D++++ V+ L+G++
Sbjct: 63 MAELKKEGKVKALIVTGCMAERYKDEILEEIPEVDEVLGTTAYDKILDAVDAALEGNQEV 122
Query: 173 LLHRKKLPALDLPKVRR----NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+L + AL LP+ +R L I GC CTYC RG+ S +E LV
Sbjct: 123 IL--SDIDALPLPETKRLVTTGGHFAYLKIAEGCDKHCTYCIIPKVRGNYRSVPMERLVN 180
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTNPPF 287
R + GVKE+ L +++T YG+D+ L+ +V EL G +RI P
Sbjct: 181 EARELAEQGVKELILVAQETTLYGKDLYGEKS--LHKLVKELCNISGIRWIRILYCYPEE 238
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
I + L ++ + P V +L +P+Q +D +L
Sbjct: 239 ITDELIQVMK--EEPKVCHYLDLPIQHANDTILK 270
>gi|253316429|ref|ZP_04839642.1| hypothetical protein SauraC_09846 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
Length = 514
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+D+ +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDREYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|357007973|ref|ZP_09072972.1| MiaB-like tRNA modifying protein YliG [Paenibacillus elgii B69]
Length = 443
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 148/279 (53%), Gaps = 25/279 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDT 116
TE + + T GC N DSE M+G + GY+L + EEA I ++NTC + + + +++T
Sbjct: 2 TEKVKVVTLGCEKNLVDSEIMSGLVYERGYSLVNEKEEATIIIVNTCGFIDAAKEESVNT 61
Query: 117 LI--AKCKSAK--KPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
++ A+ K K L+V+GC+ Q ++ +KE+ + IVG + +++++ L G
Sbjct: 62 ILDLAELKQTANLKALIVSGCLTQRYKEELMKEMPEIDGIVGTGDFHNINDIIDQALVGR 121
Query: 170 EVRLL------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+ ++ + +KLP ++ ++ + I GC ACT+C RG S ++
Sbjct: 122 KPVMVGNPVFNYEQKLPR----RMATPRYTAYVKIAEGCDNACTFCSIPIMRGKFRSRSI 177
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG 281
ES++ V + A GV+E+ L ++D+ YG D+ LP L+N + A +P G +R+
Sbjct: 178 ESILDEVAQLAAQGVREISLIAQDSTNYGTDLYDTFMLPELMNRVSA-VP--GIEWVRLH 234
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P F + L ++ + +P V ++ +P+Q D++L
Sbjct: 235 YAYPGFFTDELIDV--IANNPKVCKYIDMPLQHSEDSIL 271
>gi|315497214|ref|YP_004086018.1| MiaB family RNA modification protein [Asticcacaulis excentricus CB
48]
gi|315415226|gb|ADU11867.1| RNA modification enzyme, MiaB family [Asticcacaulis excentricus CB
48]
Length = 470
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 32/308 (10%)
Query: 34 NKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
K + + H + +S+T S + K +++KT+GC N DSE MA L GYA++D +
Sbjct: 5 EKGRLKPHKHRMSETASAASK-----KLHIKTYGCQMNVYDSERMADLLRPLGYAVSDQA 59
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP----------LVVAGCVPQ--GSRDL 141
E AD+ L+NTC ++ + + + I + K ++ + VAGCV Q G +
Sbjct: 60 EGADLVLLNTCHIREKAAEKVYSEIGRLKVMRQEKEARGEGRMTIAVAGCVAQAEGEEIM 119
Query: 142 KELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLH----RKKLPALDLPKVRRNKFVEIL 196
V +VG Q ++ E++ T + RL K AL + + + L
Sbjct: 120 NRAPAVDLVVGPQAYHQLPELIARTTRAKGERLKADFAPEDKFDALSTER-QASGPTAFL 178
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDI 255
+ GC CT+C + RG S V S++ R++ + GV+E+ L ++ AY GR+
Sbjct: 179 TVQEGCDKFCTFCVVPYTRGAEWSRPVASILEEARSLASKGVREITLLGQNVNAYNGREA 238
Query: 256 G---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV 312
LP L+ A+ +E+ +G +R ++P + + L I +P V +LH+PV
Sbjct: 239 DGEESTLPRLMQAL-SEI--EGLDRIRYTTSHPNDMTDEL--IRAHAENPAVMPYLHLPV 293
Query: 313 QSGSDAVL 320
QSGSD +L
Sbjct: 294 QSGSDKIL 301
>gi|187477340|ref|YP_785364.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
avium 197N]
gi|123765978|sp|Q2KWE0.1|MIAB_BORA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|115421926|emb|CAJ48446.1| putative nucleic acid binding protein [Bordetella avium 197N]
Length = 475
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 152/311 (48%), Gaps = 32/311 (10%)
Query: 40 LHDNHLSKTGSLSPKIP-------GTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTD 91
+H+ L + G+ +P P G+ IY++TFGC N+ DS+ M L G +TD
Sbjct: 1 MHETTLKREGASTPSNPTPSTHAAGSGKIYIRTFGCQMNEYDSDKMVDVLREDQGLEMTD 60
Query: 92 NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVP--QGSRDLKEL 144
N EEAD+ L NTC+V+ +Q + + + + + KK + V GCV +G+ +K
Sbjct: 61 NPEEADVILFNTCSVREKAQEKVFSDLGRVQHLKKLNPNLVIGVGGCVASQEGAAIVKRA 120
Query: 145 EGVSIV-GVQQIDRVVEVV----EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPIN 199
V +V G Q + R+ E++ +E + ++ +K ++P R + I
Sbjct: 121 PYVDVVFGPQTLHRLPELIRRRRDEGVSQVDISFPEIEKFD--NMPPSRVEGATAFVSIM 178
Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRD 254
GC C++C + RG S E ++ V + GV+EV L ++ AY G D
Sbjct: 179 EGCSKYCSFCVVPYTRGEEVSRPFEDVLTEVADLADQGVREVTLLGQNVNAYRGRIEGSD 238
Query: 255 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 314
+ +LL V E+P G +R ++P + + + E R P + SFLH+PVQ+
Sbjct: 239 EIADFAMLLE-YVHEIP--GIERIRYTTSHPKEMTQRMVEA--YARLPKLVSFLHLPVQA 293
Query: 315 GSDAVLSVSQK 325
GSD VL+ ++
Sbjct: 294 GSDRVLAAMKR 304
>gi|333923603|ref|YP_004497183.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333749164|gb|AEF94271.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 459
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 142/289 (49%), Gaps = 25/289 (8%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
K G + ++ TFGC N+ DSE +AG L GY T++ EEADI ++NTC V+ ++S
Sbjct: 13 KSEGQKFYHVITFGCQMNERDSESLAGMLEDMGYLPTESREEADIIILNTCCVRETAESK 72
Query: 114 MDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVE 163
+ L+ + + K KP + VAGC+ Q K++ I G I + +++
Sbjct: 73 VFGLLGRLRQLKVAKPDLIIGVAGCMSQQEEVAKKIRHSFPFVDIIFGTHNIHELPRMIQ 132
Query: 164 ETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ + E + + +K A ++P R++K + I GC CTYC + RG S
Sbjct: 133 QVRENQEAVLEVWATEKGIAENVPVRRKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERSR 192
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD-----GST 276
E+++ ++ ++A G KEV L ++ +YG+D+ ++ A+L D G
Sbjct: 193 NPENIIEEIKGLVAQGYKEVTLLGQNVNSYGKDLQMDYRF------ADLLLDLDKITGLK 246
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+R ++P + L +I C + H+P Q+GS+ +L + +
Sbjct: 247 RIRFMTSHPRDFDQRLIDIIASTNKVCEH--FHLPAQAGSNRILKLMNR 293
>gi|398800390|ref|ZP_10559662.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pantoea sp. GM01]
gi|398095557|gb|EJL85893.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pantoea sp. GM01]
Length = 474
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 147/283 (51%), Gaps = 20/283 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEAAEDADVLLLNTCSIREKAQEKVFA 61
Query: 117 LIAKCK--SAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ + K A P V V GCV +G R + V IV G Q + R+ E++ T++G
Sbjct: 62 LLGRWKKLKADNPEVIIGVGGCVASQEGERLRQRASYVDIVFGPQTLHRLPEMI-NTVRG 120
Query: 169 HEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ ++ P ++ LP+ R + + I GC CT+C + RG S +
Sbjct: 121 SKSPIVD-ISFPEIEKFDRLPEPRADGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSD 179
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
++ V + A GV+EV L ++ AY G ++ + DG +R +
Sbjct: 180 DILLEVAQLAAQGVREVNLLGQNVNAYRGATFDGDICTFAELLRLVAAIDGIDRIRFTTS 239
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+P +E +I EV R P + SFLH+PVQSGSD +L++ ++
Sbjct: 240 HP---IEFTDDIIEVYRDTPELASFLHLPVQSGSDRILTLMKR 279
>gi|217076413|ref|YP_002334129.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
africanus TCF52B]
gi|229891011|sp|B7IFC4.1|MIAB_THEAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|217036266|gb|ACJ74788.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermosipho africanus
TCF52B]
Length = 429
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 137/271 (50%), Gaps = 23/271 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++KT+GC N++DSE L GY +N EADI ++NTC V+ ++ + I +
Sbjct: 3 FFIKTYGCQMNENDSEVARYYLEQEGYESAENENEADIVILNTCVVRKKAEDKFLSTIGE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKE---LEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ K + V GC G+ LKE GV+ ++G + I R+ E VE ++KG + +
Sbjct: 63 LRKKNKKIGVMGC---GAEKLKEDLFKRGVNFVIGTRAISRIPEAVELSIKGKKAAIFD- 118
Query: 177 KKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
KL +D + R +K + I GC CTYC + RG S ++ ++ V+ +
Sbjct: 119 DKLDEIDYRNILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMDDILREVKNLS 178
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG-MTNPP--FIL 289
+GV+E+ ++ AYG+D+ G +L LLN + RI +T+ P F L
Sbjct: 179 LNGVREITYLGQNVDAYGKDLNDGTSLAKLLNE-----TKKIENIERIWFLTSYPTDFSL 233
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ +EIA + +H+PVQ GS+ +L
Sbjct: 234 DIAREIAS---SEKIAKSIHLPVQHGSNKIL 261
>gi|116747867|ref|YP_844554.1| RNA modification protein [Syntrophobacter fumaroxidans MPOB]
gi|229891028|sp|A0LFB7.1|MIAB_SYNFM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|116696931|gb|ABK16119.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Syntrophobacter
fumaroxidans MPOB]
Length = 456
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 140/293 (47%), Gaps = 27/293 (9%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
L+ P +Y++TFGC N+ DS+ L A GY T + +AD+ +NTC+V+ +
Sbjct: 5 LAKTAPAPRYLYVRTFGCQMNEYDSQRALRLLCAVGYRPTSDIADADVIFLNTCSVRDKA 64
Query: 111 QSAMDTLIAKCK--SAKKP---LVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVV 162
+ + + + + + A +P +VVAGCV Q D LK E V +VG + I + ++
Sbjct: 65 EQKVYSFLGRLRRLKAHRPWLKIVVAGCVAQQLGDGLLKRFEHVDLVVGTRGIGSIASLL 124
Query: 163 EETLKGHEVRLLHRKKLPALDLPKVRRNK--------FVEILPINVGCLGACTYCKTKHA 214
EE + R+ H LPA +L +K V + I GC CTYC H
Sbjct: 125 EEVERSKR-RVAH---LPAEELQGFTTDKCRTVGTGDVVAQVTIMQGCNNFCTYCIVPHV 180
Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPP 272
RG S + ++ + + + G +EV L ++ +YGR + ++ P LL I E
Sbjct: 181 RGRERSRAPDDILREIDFLASRGAREVLLLGQNVNSYGRGLPDPISFPDLLRRIGKE--- 237
Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+R ++P + E L E L P + LH+P QSGSD +L + +
Sbjct: 238 TSIRRVRFTTSHPKDLTEDLIECFAGL--PFLCKHLHLPFQSGSDGILKLMHR 288
>gi|219669148|ref|YP_002459583.1| MiaB-like tRNA modifying protein YliG [Desulfitobacterium hafniense
DCB-2]
gi|219539408|gb|ACL21147.1| MiaB-like tRNA modifying enzyme YliG [Desulfitobacterium hafniense
DCB-2]
Length = 442
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 134/274 (48%), Gaps = 27/274 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
T GC NQ DSE M G + Y + + E+ADI +INTCT ++S ++D ++ +
Sbjct: 9 TLGCPKNQVDSEIMTGHMMT-KYQIVNEPEQADIIIINTCTFIESAKAESIDMILQMSQY 67
Query: 124 AK----KPLVVAGCVPQGSRD-----LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + LV GC+ Q D + EL+G I+G + ++E +EE K R+
Sbjct: 68 KEEGQCQTLVATGCLAQRYGDELLAEIPELDG--IMGTGNVAEILETLEEAEKSKVRRI- 124
Query: 175 HRKKLPAL----DLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ PA +P+VR + K + + GC CTYC H RGH S T ES++
Sbjct: 125 -SAEAPAFIYDETMPRVRLSPKQYAYVKVAEGCDNYCTYCIIPHVRGHFRSRTQESILRE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V + ++GVKEV L ++DT YG+D LP L+ I +G +R+ P
Sbjct: 184 VEAMASEGVKEVLLIAQDTTRYGKDRYGEYRLPSLIKEIAG---IEGIEWIRLMYCYPEL 240
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ L I + P V +L +P+Q D VL+
Sbjct: 241 FTDEL--ITVMKETPKVCRYLDLPLQHAHDKVLA 272
>gi|428215096|ref|YP_007088240.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoria acuminata PCC 6304]
gi|428003477|gb|AFY84320.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoria acuminata PCC 6304]
Length = 452
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 142/282 (50%), Gaps = 34/282 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTC+++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILENMGFQFSEDPNQADLILYNTCSIRDNAEHKVYSYLGRQ 68
Query: 122 KSAK--KP---LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K +P L+VAGCV Q R + EL+ V +G Q +R+ +++E+ G++V
Sbjct: 69 AKRKLQQPNLTLIVAGCVAQQEGEALLRRVPELDMV--MGPQHANRLEDLLEQVFAGNQV 126
Query: 172 ---RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESL 226
LH + D+ K RR V +NV GC CTYC RG S T E++
Sbjct: 127 VATEALHIME----DITKPRRESQVTAW-VNVIYGCNERCTYCIVPSVRGIEQSRTPEAI 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTML 278
+ + G KEV L ++ AYGRD+ G NL L + + V ++P G +
Sbjct: 182 RAEMEELGRQGYKEVTLLGQNIDAYGRDLPGTTPEGRNLHTLTDLLYFVHDVP--GIERI 239
Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
R ++P + E L + L P V H+P QSG + +L
Sbjct: 240 RFATSHPRYFTERLIRACQEL--PKVCEHFHIPFQSGDNDIL 279
>gi|392961815|ref|ZP_10327269.1| RNA modification enzyme, MiaB family [Pelosinus fermentans DSM
17108]
gi|421055727|ref|ZP_15518689.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B4]
gi|421059013|ref|ZP_15521645.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B3]
gi|421067117|ref|ZP_15528631.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A12]
gi|421072487|ref|ZP_15533596.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A11]
gi|392439492|gb|EIW17203.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B4]
gi|392445687|gb|EIW22998.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A11]
gi|392450855|gb|EIW27864.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A12]
gi|392453382|gb|EIW30263.1| RNA modification enzyme, MiaB family [Pelosinus fermentans DSM
17108]
gi|392459694|gb|EIW36079.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B3]
Length = 435
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 135/277 (48%), Gaps = 19/277 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ T GC NQ ++E M G GY + + AD+++INTC+V + +I +
Sbjct: 4 VAFTTLGCKVNQFETEIMEGLFKQRGYEMVPFDQVADVYVINTCSVTHLGEKKSRQIIRR 63
Query: 121 C--KSAKKPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEE--------TLKG 168
+ K + VAGC Q S ++++ +EGV IVG Q R+V++VE+ +
Sbjct: 64 AIRLNPKAIVAVAGCYAQVSPQEIEAIEGVKVIVGTQDRQRIVDLVEQAAHCMSPVNIVT 123
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ ++ + + +P D P R L I GC CTYC +ARG L S + S++
Sbjct: 124 NIMKAEYFEDIPLFDAPGRTR----AFLKIQEGCTNFCTYCIIPYARGPLRSRPLSSIIQ 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+IA G KE+ L+ GAYGRD+ + L + + A L G LR+G I
Sbjct: 180 ETEKLIAAGFKEIVLTGIHLGAYGRDMEDEIT-LADVVRAILKIQGLVRLRLGSLESIEI 238
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ L IA + + + S LH+P+Q+G VL +
Sbjct: 239 SDEL--IALMKQDDRLCSHLHLPLQAGDATVLKAMNR 273
>gi|338814548|ref|ZP_08626562.1| MiaB-like tRNA modifying enzyme YliG [Acetonema longum DSM 6540]
gi|337273484|gb|EGO62107.1| MiaB-like tRNA modifying enzyme YliG [Acetonema longum DSM 6540]
Length = 441
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 140/275 (50%), Gaps = 20/275 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
+ GC+ N D+E M G L G +TD+ EA+I ++NTC+ ++ ++I + +
Sbjct: 7 SLGCAKNLVDTEIMLGLLDKAGINITDDPAEAEILIVNTCSFIDSAKEESISVILQMAAY 66
Query: 125 KKP-----LVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
KK L+VAGC+ Q + L EL V +I+G RVVE +E L+ E RLL
Sbjct: 67 KKTGHCRCLIVAGCLGQRYQGELLDELPEVDAILGTGAWHRVVEAIEVVLQKKE-RLLLT 125
Query: 177 KKLPAL---DLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ PA+ +P++ + I GC C++C RG S T S+V V+
Sbjct: 126 GEDPAIYDETMPRITTTPSHTAYVKIAEGCSNCCSFCVIPMVRGAFRSRTAASVVNEVKQ 185
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ A GVKE+ L ++DT +YGRD+ G L LL +V DG +RI P + +
Sbjct: 186 LAARGVKEINLIAQDTTSYGRDLYDGPKLTGLLKELVR---IDGIAWIRILYCYPKYFTD 242
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L ++ + + P + ++ +P+Q D++L V +
Sbjct: 243 DLIDL--IAKEPKICKYIDLPLQHIDDSILQVMNR 275
>gi|238917054|ref|YP_002930571.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
gi|238872414|gb|ACR72124.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750]
Length = 450
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 139/279 (49%), Gaps = 29/279 (10%)
Query: 62 YMK----TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDT 116
YMK + GC N D+E M G L+ G+ TD+ +AD+ ++NTC + Q +++T
Sbjct: 7 YMKIMFASLGCDKNLVDTENMLGILNDKGFEFTDDETQADVIVVNTCCFIGDAKQESINT 66
Query: 117 LIAKCKSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH 169
++ + + K L+V GC+ +D +KE+ V + +G D++ EVV L+G
Sbjct: 67 ILEMAQHKEDAVCKALIVTGCLAHRYKDEIIKEIPEVDAFLGTTSYDKIAEVVTSVLEGK 126
Query: 170 EVRLLHRKKLPALDLPKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
++ A LP V+ + + E L I GC CTYC RG+ SY V
Sbjct: 127 GFNVVD----DANRLPIVKEKRIITTPGYFEYLKIAEGCDKHCTYCIIPKVRGNFRSYPV 182
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG 281
E LV + + ++ +G KE+ L +++T YG D+ +LP+L++ + + +RI
Sbjct: 183 EYLVEQAKHLVHNGAKELILVAQETTLYGTDLYGKKSLPMLIHELA---KIEDLKWIRIQ 239
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P I + L I + P V +L +P+Q SD VL
Sbjct: 240 YCYPEEINDEL--IEAIKNEPKVCHYLDMPIQHASDNVL 276
>gi|75906864|ref|YP_321160.1| hypothetical protein Ava_0641 [Anabaena variabilis ATCC 29413]
gi|123758912|sp|Q3MFH1.1|RIMO_ANAVT RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
Short=S12 MTTase; Short=S12 methylthiotransferase;
AltName: Full=Ribosome maturation factor RimO
gi|75700589|gb|ABA20265.1| SSU ribosomal protein S12P methylthiotransferase [Anabaena
variabilis ATCC 29413]
Length = 440
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 135/277 (48%), Gaps = 30/277 (10%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI + GC N+ D+E+M G L GY + N E AD ++NTC+ ++S + ++ TL+
Sbjct: 6 TIAISHLGCEKNRIDTEHMLGLLVKAGYGVDTNEELADYVIVNTCSFIESAREESVKTLV 65
Query: 119 AKCKSAKKPLVVAGCVPQ--GSRDLKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
+ A K +V+ GC+ Q ++ L+EL E V++VG ++V V+E +G V L+
Sbjct: 66 -ELAEANKKIVITGCMAQHFQTQLLEELPEAVAVVGTGDYHKIVNVIERAEQGERVTLVS 124
Query: 176 RKKLPALD--LPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
K D P+ R + V L + GC C +C H RG+ S T+ES+V
Sbjct: 125 AKPTYIADETTPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRSRTIESIVAEAEQ 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR-IGMTNPPFILEH 291
++A GV+E+ L S+ T YG DI P + +LR +G N P+I H
Sbjct: 185 LVAQGVQEIILISQITTNYGLDIYGK-------------PKLAELLRALGKINVPWIRMH 231
Query: 292 LKE--------IAEVLRHPCVYSFLHVPVQSGSDAVL 320
IA + P V +L +P+Q VL
Sbjct: 232 YAYPTGLTPDVIAAIQETPNVLPYLDLPLQHSHSEVL 268
>gi|228992460|ref|ZP_04152388.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
12442]
gi|229000596|ref|ZP_04160136.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
gi|229006018|ref|ZP_04163707.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
gi|228755217|gb|EEM04573.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
gi|228759151|gb|EEM08157.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
gi|228767281|gb|EEM15916.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
12442]
Length = 509
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 141/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
K K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + K
Sbjct: 128 LKPLKQRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKA 187
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIN 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKIDIARVRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|229086321|ref|ZP_04218499.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
gi|228697016|gb|EEL49823.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
Length = 509
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++++AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTKDADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
K K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + K
Sbjct: 128 LKPLKQRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKA 187
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIN 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKIDIARVRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|423074646|ref|ZP_17063371.1| ribosomal protein S12 methylthiotransferase RimO
[Desulfitobacterium hafniense DP7]
gi|361854466|gb|EHL06532.1| ribosomal protein S12 methylthiotransferase RimO
[Desulfitobacterium hafniense DP7]
Length = 445
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 134/274 (48%), Gaps = 27/274 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
T GC NQ DSE M G + Y + + E+ADI +INTCT ++S ++D ++ +
Sbjct: 12 TLGCPKNQVDSEIMTGHMMT-KYQIVNEPEQADIIIINTCTFIESAKAESIDMILQMSQY 70
Query: 124 AK----KPLVVAGCVPQGSRD-----LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + LV GC+ Q D + EL+G I+G + ++E +EE K R+
Sbjct: 71 KEEGQCQTLVATGCLAQRYGDELLAEIPELDG--IMGTGNVAEILETLEEAEKSKVRRI- 127
Query: 175 HRKKLPAL----DLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ PA +P+VR + K + + GC CTYC H RGH S T ES++
Sbjct: 128 -SAEAPAFIYDETMPRVRLSPKQYAYVKVAEGCDNYCTYCIIPHVRGHFRSRTQESILRE 186
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V + ++GVKEV L ++DT YG+D LP L+ I +G +R+ P
Sbjct: 187 VEAMASEGVKEVLLIAQDTTRYGKDRYGEYRLPSLIKEIAR---IEGIEWIRLMYCYPEL 243
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ L I + P V +L +P+Q D VL+
Sbjct: 244 FTDEL--ITVMKETPKVCRYLDLPLQHAHDKVLA 275
>gi|89894712|ref|YP_518199.1| hypothetical protein DSY1966 [Desulfitobacterium hafniense Y51]
gi|123279971|sp|Q24W37.1|RIMO_DESHY RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
Short=S12 MTTase; Short=S12 methylthiotransferase;
AltName: Full=Ribosome maturation factor RimO
gi|89334160|dbj|BAE83755.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 445
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 134/274 (48%), Gaps = 27/274 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
T GC NQ DSE M G + Y + + E+ADI +INTCT ++S ++D ++ +
Sbjct: 12 TLGCPKNQVDSEIMTGHMMT-KYQIVNEPEQADIIIINTCTFIESAKAESIDMILQMSQY 70
Query: 124 AK----KPLVVAGCVPQGSRD-----LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + LV GC+ Q D + EL+G I+G + ++E +EE K R+
Sbjct: 71 KEEGQCQTLVATGCLAQRYGDELLAEIPELDG--IMGTGNVAEILETLEEAEKSKVRRI- 127
Query: 175 HRKKLPAL----DLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ PA +P+VR + K + + GC CTYC H RGH S T ES++
Sbjct: 128 -SAEAPAFIYDETMPRVRLSPKQYAYVKVAEGCDNYCTYCIIPHVRGHFRSRTQESILRE 186
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V + ++GVKEV L ++DT YG+D LP L+ I +G +R+ P
Sbjct: 187 VEAMASEGVKEVLLIAQDTTRYGKDRYGEYRLPSLIKEIAR---IEGIEWIRLMYCYPEL 243
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ L I + P V +L +P+Q D VL+
Sbjct: 244 FTDEL--ITVMKETPKVCRYLDLPLQHAHDKVLA 275
>gi|218437115|ref|YP_002375444.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 7424]
gi|229890508|sp|B7K993.1|MIAB_CYAP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218169843|gb|ACK68576.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7424]
Length = 454
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 146/286 (51%), Gaps = 32/286 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY +D+ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDIGYQWSDDPNEADLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAK--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K KP L+VAGCV Q G + L+ + + +V G Q +R+ ++++E L G++V
Sbjct: 69 AKRKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLQDLLQEVLAGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR V +NV GC CTYC + RG S T +++ +
Sbjct: 129 TEPIHI-VEDITKPRRESTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPQAIRAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G + L + + V ++P G +R +
Sbjct: 187 ELGQQGYKEITLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYYVNDVP--GIERIRFATS 244
Query: 284 NPPFILEHL----KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+P + E L KE+ +V H H+P QSG + +L ++
Sbjct: 245 HPRYFTERLIVACKELPKVCEH------FHIPFQSGDNDLLKAMKR 284
>gi|373454708|ref|ZP_09546572.1| ribosomal protein S12 methylthiotransferase RimO [Dialister
succinatiphilus YIT 11850]
gi|371935571|gb|EHO63316.1| ribosomal protein S12 methylthiotransferase RimO [Dialister
succinatiphilus YIT 11850]
Length = 446
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 133/271 (49%), Gaps = 20/271 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
+ GCS N D+E M G + GY LT++ EA + +INTCT P++ I K
Sbjct: 9 SLGCSKNLVDTEMMVGIMEKAGYELTEDLSEAQVIIINTCTFIDPAKEESVETILKAAEY 68
Query: 125 KK-----PLVVAGCVPQGSRDL--KELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
KK LV AGC+ Q ++ KE+ V + +G +++ V E+ + E ++
Sbjct: 69 KKTGKCEKLVAAGCLTQQYKEALGKEIPEVDVFIGTDSWQHILDAVNESYEKDE-KVYSF 127
Query: 177 KKLPALDLPKVRRN----KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
P + + R K+ + I GC CT+C + RG + S ++ S+V VR
Sbjct: 128 DTNPCANEELIPRQTLTPKYSAYVKIAEGCSNGCTFCYIPYVRGPMHSRSIPSIVHEVRR 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ A+G +E L ++D YGRD+ G NL LL +V +G +R+ P + +
Sbjct: 188 LAAEGTREFNLIAQDLSCYGRDLKNGTNLAALLRELV---KIEGVKWIRLFYLYPTYFDD 244
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
L ++ +L+ + ++ +P+Q SD+VL
Sbjct: 245 ELLDV--ILKEDKICKYVDIPLQHISDSVLQ 273
>gi|320353884|ref|YP_004195223.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfobulbus propionicus
DSM 2032]
gi|320122386|gb|ADW17932.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfobulbus propionicus
DSM 2032]
Length = 450
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 138/288 (47%), Gaps = 29/288 (10%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
++ +Y+KTFGC N+ DSE M L+ GY + E AD+ LINTC+++ ++ + +L
Sbjct: 2 SKNLYIKTFGCQMNERDSEIMEQMLAQEGYVPAASPEGADVVLINTCSIREKAEQKVFSL 61
Query: 118 IAKCKS--AKKP---LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
+ + + A+ P L V GCV Q G R + + V IVG QQI ++ E++ +G
Sbjct: 62 LGQLREEKARNPSLLLGVTGCVAQQEGERIRERMPHVDLIVGTQQIYQLPEMLARLTQGM 121
Query: 170 EVRLLHRKKLPALDLPKVRR-----------NKFVEILPINVGCLGACTYCKTKHARGHL 218
R + +P ++ + F + I GC C+YC RG
Sbjct: 122 TTRETATDLEGSFAIPPFQKLLINTPPSPAPHSFRRFVTIMQGCNNYCSYCVVPGTRGRE 181
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-----DIGVNLPILLNAIVAELPPD 273
S V ++ V +++ GVKE+ L ++ +YG+ D V+ P LL + +
Sbjct: 182 ISRPVADIMEEVEILVSQGVKEITLLGQNVNSYGKTNKVADTEVDFPQLLRQVAL---VN 238
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
G LR ++P + E L + C + H+PVQSGS+AVL
Sbjct: 239 GLRRLRFTTSHPKDLSEALMRCFAEIDILCPH--FHLPVQSGSNAVLQ 284
>gi|312143592|ref|YP_003995038.1| MiaB family RNA modification protein [Halanaerobium
hydrogeniformans]
gi|311904243|gb|ADQ14684.1| RNA modification enzyme, MiaB family [Halanaerobium
hydrogeniformans]
Length = 442
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 136/274 (49%), Gaps = 27/274 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T+GC N+ DSE +AG L GY T+ E ADI L+NTCT++ ++ + + + K
Sbjct: 11 TYGCQMNEHDSEKLAGMLENIGYNNTNKLENADIVLLNTCTIRENAELKVFGKLGQLKEY 70
Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE--VR 172
K+ + + GC+ Q ++E+ I G I +V E++++ K E V
Sbjct: 71 KRKNPDLIIGIGGCMMQLEEPVEEIYKKYRHVDLIFGTHNIHQVPELIKKIEKNRERVVE 130
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ +++ DLP R ++ + I GC CTYC + RG S +E+++
Sbjct: 131 VWDQEEGLIPDLPSQRESEHSAWISIIQGCDNFCTYCIVPYVRGRERSRPLEAIIKEAEK 190
Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ A+GVKEV L ++ +YG D+ ++ P+LL + D +R ++P E
Sbjct: 191 LAAEGVKEVTLLGQNVNSYGNDLAEEIDFPLLLEELNK---VDSLARIRFMTSHPRDFSE 247
Query: 291 HL----KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L K + +V +H +H+P+QSGS+ +L
Sbjct: 248 KLLLAIKNLEKVAKH------IHLPIQSGSNKIL 275
>gi|261416782|ref|YP_003250465.1| radical SAM protein [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|385791613|ref|YP_005822736.1| radical SAM domain-containing protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261373238|gb|ACX75983.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327266|gb|ADL26467.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 467
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 124/242 (51%), Gaps = 17/242 (7%)
Query: 93 SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK--PLVVAGCVPQGSRD--LKELEGVS 148
+E+ + + +N CTVK + AM L+ K S P+ + GC P+ R+ L+ + V
Sbjct: 70 TEKPEAFYLNVCTVKG-NAGAMK-LLRKAASTFPGVPIYITGCAPKDFREEALRTVPHVQ 127
Query: 149 IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRN-----KFVEILPINVGCL 203
++++D + ++ + ++ R D K RN FV I+ I GCL
Sbjct: 128 FTSLKELDASAILPTQSAQSPSSQINARTP----DSNKASRNVLRESPFVGIVNIEEGCL 183
Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILL 263
AC +C T +G L S+ +++V +V+ ++ DG E+ L+ +D YG DIG NL L
Sbjct: 184 DACAFCSTHLVKGRLHSFAPQTIVDQVQALVDDGCLEIQLTGQDCACYGFDIGTNLAELT 243
Query: 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVS 323
I+ + +G+ +R+GM NP +L + + + +Y F+H+PVQSGS+ VL
Sbjct: 244 QRILTHV--NGNYRIRLGMGNPRHVLSYQEALLNCFTDDRIYKFIHIPVQSGSENVLKAM 301
Query: 324 QK 325
+
Sbjct: 302 NR 303
>gi|90420542|ref|ZP_01228449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aurantimonas
manganoxydans SI85-9A1]
gi|90335270|gb|EAS49023.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aurantimonas
manganoxydans SI85-9A1]
Length = 483
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 140/295 (47%), Gaps = 37/295 (12%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T +++KT+GC N DS+ M L+ GY T+ E+AD+ L+NTC ++ + + +
Sbjct: 17 TRKVFIKTYGCQMNVYDSQRMGDALARDGYQPTEVIEDADLVLLNTCHIRERAAEKIYSE 76
Query: 118 IAKCKSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEET 165
+ + K K + VAGCV Q G + V +V G Q R+ E +
Sbjct: 77 LGRIKLLKAEKAEQGVEMRVAVAGCVAQAEGQEIIDRAPVVDLVIGPQTYHRLPEALARV 136
Query: 166 LKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG 216
+G +V + H LP + P++R L + GC CT+C + RG
Sbjct: 137 ARGDKVVETDYAVEDKFRH---LPKVTAPQIRTRGVTAFLTVQEGCDKFCTFCVVPYTRG 193
Query: 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLNAIVAEL 270
S + ++G RT+ A GV+EV L ++ + GRDIG L LL A+ AE+
Sbjct: 194 SEVSRPLTQIMGEARTLAAAGVREVTLLGQNVNGWSGQDEAGRDIG--LGGLLRAL-AEI 250
Query: 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
P G LR ++P + + L IA P + +LH+PVQSGSD +L +
Sbjct: 251 P--GFARLRYTTSHPRDMDDDL--IAAHRDLPALMPYLHLPVQSGSDRILKAMNR 301
>gi|300867546|ref|ZP_07112196.1| Ribosomal protein S12 methylthiotransferase rimO [Oscillatoria sp.
PCC 6506]
gi|300334434|emb|CBN57366.1| Ribosomal protein S12 methylthiotransferase rimO [Oscillatoria sp.
PCC 6506]
Length = 439
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 139/283 (49%), Gaps = 32/283 (11%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI GC N+ D+E+M G L+ GY + N E AD ++NTC+ +++ + ++ TL+
Sbjct: 6 TIAFTHLGCEKNRIDTEHMIGLLAQAGYQVDANEELADYVIVNTCSFIQAAREESVRTLV 65
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
++ KK +V+AGC+ Q + L EL E V++VG ++V V+E+ KG V L+
Sbjct: 66 ELAQANKK-IVIAGCMAQHFQQDLLNELPEAVALVGTGDYHQIVGVIEQVEKGDRVTLVS 124
Query: 176 RKKLPALD--LPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D P+ R + V L I GC C +C H RG+ S T+ES+V
Sbjct: 125 AEPTYIADENTPRYRTTPEAVAYLRIAEGCDYRCAFCIIPHLRGNQRSRTIESIVAEAEQ 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ A+GVKE+ L S+ T YG+DI L LL+A +G + P+I
Sbjct: 185 LAAEGVKEIILISQITTNYGKDIYGEPKLAELLHA--------------LGKVDIPWIRM 230
Query: 291 HL--------KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
H K +A + P + +L +P+Q +L +
Sbjct: 231 HYAYPTGLTPKVMAAIQETPNILPYLDLPLQHSHPEILRAMNR 273
>gi|323703565|ref|ZP_08115210.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
nigrificans DSM 574]
gi|323531468|gb|EGB21362.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
nigrificans DSM 574]
Length = 459
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 142/289 (49%), Gaps = 25/289 (8%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
K G + ++ TFGC N+ DSE +AG L GY T++ EEADI ++NTC V+ ++S
Sbjct: 13 KSEGQKFYHVITFGCQMNERDSESLAGMLEDMGYLPTESREEADIIILNTCCVRETAESK 72
Query: 114 MDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVE 163
+ L+ + + K KP + VAGC+ Q K++ I G I + +++
Sbjct: 73 VFGLLGRLRQLKVAKPDLIIGVAGCMSQQEEVAKKIRHSFPFVDIIFGTHNIHELPRMIQ 132
Query: 164 ETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ + E + + +K A ++P R++K + I GC CTYC + RG S
Sbjct: 133 QVRENQEAVLEVWATEKGIAENVPVRRKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERSR 192
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD-----GST 276
E+++ ++ ++A G KEV L ++ +YG+D+ ++ A+L D G
Sbjct: 193 NPENIIEEIKGLVAQGYKEVTLLGQNVNSYGKDLQMDYRF------ADLLLDLDKITGLK 246
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+R ++P + L ++ C + H+P Q+GS+ +L + +
Sbjct: 247 RIRFMTSHPRDFDQRLIDVIASTNKVCEH--FHLPAQAGSNRILKLMNR 293
>gi|381210061|ref|ZP_09917132.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lentibacillus
sp. Grbi]
Length = 526
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 138/271 (50%), Gaps = 15/271 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ D+E MAG L+ GY T+++++ADI L+NTC ++ +++ + I K
Sbjct: 87 IRTYGCQMNEHDTEVMAGILNEMGYESTNDTKDADIILLNTCAIRENAENKVFGEIGHLK 146
Query: 123 SAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
+ K+ L V GC+ Q +R +K+ V ++ G I R+ +V+E + G E
Sbjct: 147 ALKREKPDLILGVCGCMSQEEKVVNRIMKKHPQVDLIFGTHNIHRLPHLVKEAMFGKEKV 206
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ +LPK R+ K + I GC CTYC RG S E ++ V
Sbjct: 207 VEVWSKEGDIIENLPKARKGKVKAWVNIMYGCDKFCTYCIVPMTRGKERSRLPEDIIQEV 266
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + A G KE+ L ++ AYG+D + L ++ +L +R ++P +
Sbjct: 267 RHLTAQGYKEITLLGQNVNAYGKDFE-DSDYGLGDLMDDLHKIDIPRIRFTTSHPRDFDD 325
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
L E+ + + + +H+PVQSGS VL
Sbjct: 326 RLIEV--LAKGGNLLDHIHLPVQSGSSEVLK 354
>gi|359458947|ref|ZP_09247510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acaryochloris
sp. CCMEE 5410]
Length = 454
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 143/282 (50%), Gaps = 24/282 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--- 118
++ T+GC N++DSE MAG L GY ++N ++A++ L NTCT++ ++ + + +
Sbjct: 9 HITTYGCQMNKADSERMAGVLENMGYQWSENPDDANLILCNTCTIRDNAEHKVYSYLGRQ 68
Query: 119 AKCKSAKK--PLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
AK K A+ LVVAGCV Q D L+ + + +V G Q +R+ +++E+ G +V L
Sbjct: 69 AKRKHAQPDLTLVVAGCVAQQEGDALLRRVPELDLVMGPQHANRLQDLLEQVASGQQV-L 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 128 ATEPIHIVEDITKPRRDSAVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G +L L + + V ++P G +R +
Sbjct: 187 QLGEQGFKEVTLLGQNIDAYGRDLPGTTSEGRHLHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+P + E L I P V H+P QSG + VL +
Sbjct: 245 HPRYFTERL--IQACYELPKVCEHFHIPFQSGDNDVLKAMSR 284
>gi|425736888|ref|ZP_18855164.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
massiliensis S46]
gi|425483360|gb|EKU50512.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
massiliensis S46]
Length = 512
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 135/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++KT+GC N D+E MAG A GY + + AD+ L+NTC ++ +++ + + I
Sbjct: 68 TFFIKTYGCQMNAHDTEVMAGIFGALGYTPSTDINSADVILLNTCAIRENAENKVFSEIG 127
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I ++ E++EE K
Sbjct: 128 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYMSK 187
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S + ++
Sbjct: 188 AMVVDVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 247
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + G +E+ L ++ +YG+D+ ++ L + ++ +R ++P
Sbjct: 248 DEVRDLARQGYQEITLLGQNVNSYGKDLK-DIEYGLGDLFEDISKIDIPRVRFTTSHPWD 306
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+H+ ++ + + + +H+PVQSG+DAVL +
Sbjct: 307 FTDHMIDV--IAKGGNIVPHIHLPVQSGNDAVLKI 339
>gi|406667388|ref|ZP_11075146.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
isronensis B3W22]
gi|405384756|gb|EKB44197.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
isronensis B3W22]
Length = 511
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 136/274 (49%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM-----D 115
Y++T+GC N+ D+E MAG GY T+ EEAD+ L+NTC ++ +++ +
Sbjct: 66 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEMIEEADVVLLNTCAIRENAENKVFGELGF 125
Query: 116 TLIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
L K K+ + + V GC+ Q ++ LK+ + V +V G I R+ ++ + E
Sbjct: 126 LLKYKRKNPEMLIGVCGCMSQEESVVNKILKQYQHVDMVFGTHNIHRLPNILHDAYMSKE 185
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK R + I GC CTYC + RG S E ++
Sbjct: 186 MVVEVWSKEGDVIENLPKKRIGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 245
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 246 EVRELAAQGYKEIMLLGQNVNAYGKDFD-DIEYRLGDLMDELRKIDIPRIRFTTSHPRDF 304
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS+ +L +
Sbjct: 305 DDHLIEV--LAKGGNLVDHIHLPVQSGSNEILKI 336
>gi|121534805|ref|ZP_01666625.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
gi|121306600|gb|EAX47522.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
Length = 432
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 133/283 (46%), Gaps = 19/283 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
T GC NQ ++E + G GY + E AD+++INTC+V + LI +
Sbjct: 6 FTTLGCKVNQFETEVIEGLFKQRGYTIVSFDEPADVYVINTCSVTHLGEKKSRQLIRRAA 65
Query: 123 SA--KKPLVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGH-EVRLL--- 174
+ +V GC Q S D + + GV IVG Q R+V++VEE + +V +
Sbjct: 66 RVNPEAVIVATGCYAQVSPDKVAAIPGVDVIVGTQDRGRIVDLVEEARRTRGQVNAVTDI 125
Query: 175 ----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ +P D P R L I GC CTYC +ARG L S +++S+
Sbjct: 126 MEAEQFEDIPIFDAPGRTR----AFLKIQEGCTNFCTYCIIPYARGPLRSRSLDSVKREA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+IA G KE+ L+ GAYGRD+G L L +A+ L G LR+ + +
Sbjct: 182 EKLIATGFKEIVLTGIHLGAYGRDMGDGLE-LADAVETVLSVAGLVRLRLSSLESVEVSD 240
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVS 333
L +A + R + LH+P+Q+G D VLS + T+ S
Sbjct: 241 RL--VALMRRDAKLCPHLHLPLQAGDDHVLSQMNRHYTTEEYS 281
>gi|375085640|ref|ZP_09732272.1| MiaB-like tRNA modifying enzyme [Megamonas funiformis YIT 11815]
gi|374567051|gb|EHR38283.1| MiaB-like tRNA modifying enzyme [Megamonas funiformis YIT 11815]
Length = 433
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 136/286 (47%), Gaps = 20/286 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ + T GC NQ ++E M G GY + D SE AD ++INTC+V + LI +
Sbjct: 4 VALTTLGCKVNQVETEIMEGLFRNRGYEIVDFSEPADFYIINTCSVTHLGERKSRQLIRR 63
Query: 121 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG-------H 169
++A GC Q S ++ ++EGV +V G +Q D++V++VE+ + +
Sbjct: 64 ANRLNDNAIIAVTGCYAQIASDEISKIEGVRVVIGTKQRDKIVDLVEKAAREDGLFNEVN 123
Query: 170 EVRLLHR-KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+V +H + +P P R L I GC C+YC + RG + S +ES+
Sbjct: 124 DVMHMHEFEDIPLYGTPHRTR----AFLKIQDGCCNFCSYCIIPYTRGPIRSRKLESIKT 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V ++ + E+ + GAYGRD G N+ L +A+ L + LR+G
Sbjct: 180 AVDQLVEENFHEIVFTGIHLGAYGRDFKGENIS-LSDAVEICLANENLKRLRLGSLESIE 238
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVS 333
I L E+ + H LH+P+Q+GSD +L + T+ +
Sbjct: 239 ISPRLLELVKT--HKRFTKHLHLPLQAGSDEILKAMNRHYTTEEFA 282
>gi|334117224|ref|ZP_08491316.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcoleus vaginatus FGP-2]
gi|333462044|gb|EGK90649.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcoleus vaginatus FGP-2]
Length = 447
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 141/279 (50%), Gaps = 28/279 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ EA + L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILENMGFEFSEDPNEASLILYNTCTIRDNAEQRVYSNLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K+ L+VAGCV Q R + EL+ V +G Q +R+ +++E+ +G++V
Sbjct: 69 AHRKRQEPGLTLIVAGCVAQQEGEALLRRVPELDLV--MGPQHANRLEDLLEQVFEGNQV 126
Query: 172 RLLHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ D+ K RR+ K + + GC CTYC + RG S E++ +
Sbjct: 127 VATEAVEIME-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRMPEAIRAEM 185
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGM 282
+ G KEV L ++ AYGRD+ G N L + + V ++P G LR
Sbjct: 186 EDLGRQGYKEVTLLGQNIDAYGRDLPGTKPDGSNQHTLTDLLYFVQDVP--GVDRLRFAT 243
Query: 283 TNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + E L K AE+ P V H+P QSG + +L
Sbjct: 244 SHPRYFTERLIKACAEL---PQVCEHFHIPFQSGDNDIL 279
>gi|389578567|ref|ZP_10168594.1| ribosomal protein S12 methylthiotransferase RimO [Desulfobacter
postgatei 2ac9]
gi|389400202|gb|EIM62424.1| ribosomal protein S12 methylthiotransferase RimO [Desulfobacter
postgatei 2ac9]
Length = 443
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 134/275 (48%), Gaps = 18/275 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLIA 119
IY+++ GCS NQ DSE M G+L A G+ + + +AD ++NTC + + SQ A+D ++
Sbjct: 3 IYLESLGCSRNQVDSEIMLGRLVAAGHQMITDPAQADAIIVNTCGFISTASQEAVDVILE 62
Query: 120 ----KCKSAKKPLVVAGCVPQGSRDLKEL-----EGVSIVGVQQIDRVVEVVEETLKGHE 170
K + + LVV GC+ Q +D +L E + +G D +V+ VE T K
Sbjct: 63 MAEFKTTGSCRRLVVTGCLVQRYKDDPDLLDSLPEVDAFLGTAACDHIVKAVENTDK-MP 121
Query: 171 VRLLHRKKLPALDLPKVRR---NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
L +D P R N+ + + ++ GC CTYC RG S +E +
Sbjct: 122 FTLFPEPDARQVDTPVQARELLNEKIAYIKVSEGCSRHCTYCIIPTLRGRQRSRPIELIC 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELP-PDGSTMLRIGMTNP 285
++ GVKE+ L++E+T YG D+ G +L ++ D S LR T+P
Sbjct: 182 REASALLDKGVKEIILTAENTTDYGLDLAGPAFHTVLEKTSKKMAQKDPSAWLRFLYTHP 241
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ E + I V RH + S+ VP+Q D VL
Sbjct: 242 HTLDERV--IEAVQRHANICSYYDVPIQHAHDEVL 274
>gi|51892771|ref|YP_075462.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM
14863]
gi|81388877|sp|Q67NX5.1|RIMO_SYMTH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
Short=S12 MTTase; Short=S12 methylthiotransferase;
AltName: Full=Ribosome maturation factor RimO
gi|51856460|dbj|BAD40618.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM
14863]
Length = 485
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 139/273 (50%), Gaps = 17/273 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLIA---- 119
+ GC+ N D+E M G L GY +T+ +EEAD+ ++NTC + + Q ++D ++
Sbjct: 25 SLGCAKNLVDTESMIGLLRNTGYQITNRAEEADVLVVNTCGFIDAAKQESVDAILEAAQH 84
Query: 120 KCKSAKKPLVVAGC-VPQG----SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
K + + LVVAGC VP+ +R++ E++ ++VG R+ EVV L G V+ +
Sbjct: 85 KTRGRCQALVVAGCMVPRYGEELAREIPEID--ALVGTADYPRIGEVVAGILAGQRVQQI 142
Query: 175 HR-KKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ + +V + L I GC AC +C RG S +ES+V R
Sbjct: 143 SDPDSITDWNFERVLATPGYTAYLKIAEGCDCACAFCSIPLMRGRHRSRPIESIVDEARR 202
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ GV+E+ + S+DT YG D+ P+L + DG +RI + P I + L
Sbjct: 203 LAGMGVRELVVISQDTTYYGLDL-YRKPMLARLLRELAQVDGIRWIRIHYSYPTRITDEL 261
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
E+ ++ P V ++L +P+Q GS+ VL + +
Sbjct: 262 IEV--IVTEPKVLNYLDLPLQHGSNRVLRIMNR 292
>gi|407795674|ref|ZP_11142632.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salimicrobium
sp. MJ3]
gi|407020015|gb|EKE32729.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salimicrobium
sp. MJ3]
Length = 518
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 137/272 (50%), Gaps = 16/272 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ D+E MAG GY T +EEADI L+NTC ++ +++ + I K
Sbjct: 79 IRTYGCQMNEHDTEVMAGIFETMGYEPTKQAEEADIILLNTCAIRENAENKVFGEIGHLK 138
Query: 123 SAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE-- 170
S K+ L V GC+ Q +R L++ + I G I ++ E+++E + E
Sbjct: 139 SLKRENPDLILGVCGCMAQEEGVVNRILQKHPFIDMIFGTHNIHKIPELLKEAMFSKEMV 198
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + ++ +LP+ R+ K + + GC CTYC + RG S E ++ V
Sbjct: 199 IDVWSKEGDIIENLPRSRKGKIKAWVNVMYGCDKFCTYCIVPYTRGKERSRLPEDIIQEV 258
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + A G KEV L ++ AYG+D+ +L L ++ +L +R ++P +
Sbjct: 259 RHLAAQGYKEVTLLGQNVNAYGKDL--DLDYGLGDLMDDLHKIDIPRVRFTTSHPRDFDD 316
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
L E+ + + + +H+PVQSGS VL +
Sbjct: 317 RLIEV--LAKGGNMLDHIHLPVQSGSSDVLKI 346
>gi|342732600|ref|YP_004771439.1| MiaB-like tRNA modifying protein [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384455992|ref|YP_005668587.1| MiaB family RNA modification protein [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417965715|ref|ZP_12607202.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-4]
gi|417969118|ref|ZP_12610080.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-co]
gi|418015993|ref|ZP_12655558.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372854|ref|ZP_12964946.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330055|dbj|BAK56697.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506328|gb|EGX28622.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984335|dbj|BAK80011.1| RNA modification enzyme, MiaB family [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380335944|gb|EIA26026.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-4]
gi|380338487|gb|EIA27374.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-co]
gi|380342523|gb|EIA30968.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 434
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 140/274 (51%), Gaps = 26/274 (9%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+ T GC N D+E M L + + E AD++ INTCTV + S I+KCK
Sbjct: 5 ISTLGCRVNIYDTEIMISALKEDDFEVVSYDEFADVYCINTCTVTNTSDKKSRQFISKCK 64
Query: 123 SAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQ---QIDRVVEVVEETLKGHEVRLLH 175
++A GC PQ S+D + E++ V+I+ G + Q+ + + ET G +V +
Sbjct: 65 KINPKAIIAMVGCYPQVSKDEVSEIKDVNIILGNRFKGQLPYYIRLFLET--GKQVIKVD 122
Query: 176 RKKLPALDLP----KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L + + ++K + I GC CTYC ARG + S + VR
Sbjct: 123 DNILRNISFEDRSIRTLKDKHRAFIKIQDGCNKFCTYCIIPFARGGVCSKEPRKIFDEVR 182
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPPF--- 287
+++++G KEV L+ +T +YG D+G+++ ++ L ++ E+ DG +R+G +P F
Sbjct: 183 SLVSNGYKEVVLTGINTTSYGDDLGIDINLVSLIELLDEI--DGLERIRVGSVDPEFFTT 240
Query: 288 -ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
I+E + +I +++ H H+ +QSG D+VL
Sbjct: 241 EIVERMSKIKKLMPH------FHLSLQSGCDSVL 268
>gi|288556902|ref|YP_003428837.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
pseudofirmus OF4]
gi|288548062|gb|ADC51945.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
pseudofirmus OF4]
Length = 541
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 159/322 (49%), Gaps = 21/322 (6%)
Query: 31 PKYNKNKPR-LHDNHLSKTGSLSPK----IPGTETIYMKTFGCSHNQSDSEYMAGQLSAF 85
P Y + K R D + + L P+ I +T +++T+GC N DSE MAG L+
Sbjct: 65 PDYKQGKRRGKEDVQVLRPDDLIPEPMQGIGNGKTFHIRTYGCQMNTHDSENMAGLLTEM 124
Query: 86 GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQG--- 137
G+ TD++++AD+ L+NTC ++ +++ + I KS KK L V GC+ Q
Sbjct: 125 GFTETDDTKDADVILLNTCAIRENAENKVFGEIGHLKSLKKERPEVILGVCGCMSQEENV 184
Query: 138 -SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFV 193
+R +++ + + I+ G I R+ +++ + G E + + ++ ++P+ R K
Sbjct: 185 VNRIMQKHQHIDIIFGTHNIHRLPSLLQNAIYGKEMVIEVWSKEGDIVENMPRKREGKTQ 244
Query: 194 EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR 253
+ I GC CTYC + RG S E ++ VR + G KE+ L ++ AYG+
Sbjct: 245 AWVNIMYGCDKFCTYCIVPYTRGKERSRLPEDIIDEVRDLARQGYKEITLLGQNVNAYGK 304
Query: 254 DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
D+ + L ++ ++ +R ++P +HL I+ + + + +H+PVQ
Sbjct: 305 DLK-DRDYRLGHLMDDIHKIDIPRVRFTTSHPRDFDDHL--ISVLSKGGNLVEHIHLPVQ 361
Query: 314 SGSDAVLS-VSQKIVPTKSVSL 334
G+ +L +++K + V L
Sbjct: 362 HGNSDILKLMARKYTREQYVEL 383
>gi|157364247|ref|YP_001471014.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
lettingae TMO]
gi|229891012|sp|A8F716.1|MIAB_THELT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157314851|gb|ABV33950.1| RNA modification enzyme, MiaB family [Thermotoga lettingae TMO]
Length = 436
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 140/284 (49%), Gaps = 34/284 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ----SAMDT 116
++ KT+GC N +D+E MAG LS GY + + EEADI ++NTC V+ SQ SA+
Sbjct: 3 VFFKTYGCQMNLNDTETMAGILSQHGYEVVNLPEEADIVILNTCVVRQKSQEKYHSALGQ 62
Query: 117 LIAKCKSAKKPLV-VAGCVPQGSRDLKELEGVS--------IVGVQQIDRVVEVVEETLK 167
+ KS K L+ +AGC GS LEG ++G + I ++ EV+++ +
Sbjct: 63 FVKLKKSGKIKLIGIAGC---GS----NLEGEELIKSGADFVIGSRSIGKIAEVLQKAAR 115
Query: 168 GHEVRLLHRKKLPALD--LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
G ++ L + +D P++R +K + I GC CTYC + RG S +
Sbjct: 116 GEKIVYLE-DDICTVDSKTPRMRFSKHHAWITIIHGCNRFCTYCIVPYTRGREKSRPLPD 174
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGM- 282
++ V + +GVKE+ ++ AYG+D+ G NL L+ E + RI
Sbjct: 175 VLLEVEKLAKNGVKEITFLGQNVDAYGKDLKDGTNLASLI-----EQAGKFEQIKRIWFL 229
Query: 283 -TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ P I + L I V P H+PVQSGS+ +L + +
Sbjct: 230 TSYPTDITDKL--IETVAEDPKAAKSFHIPVQSGSNRILRLMNR 271
>gi|269215580|ref|ZP_06159434.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC
700122]
gi|269131067|gb|EEZ62142.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC
700122]
Length = 454
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 132/280 (47%), Gaps = 26/280 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T Y T+GC N+ DSE +AG L + G EE++I + TC V+ + + +
Sbjct: 10 KTFYTFTYGCQMNEHDSERIAGLLESCGCVPVSTLEESEIVIFMTCCVRERADIRLMGQV 69
Query: 119 AKCKSA---------KKPLVVAGCVPQGSRD----LKELEGVSIV-GVQQIDRVVEVVEE 164
+ K K+ + + GC+ G RD + L+ V +V G Q I+R+ ++
Sbjct: 70 STIKGVPLPEGSALDKRIVCIGGCI--GQRDGIALTETLDNVDVVFGTQNIERLPYLITG 127
Query: 165 TLK--GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
L GH V + + DLP R + LPI VGC CT+C + RG S
Sbjct: 128 VLSQGGHFVEIEQDSDSFSTDLPSDREKPWSAWLPITVGCDNFCTFCIVPYVRGRERSRA 187
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRI 280
+E +V +A+GVKE+ L ++ +YGRD+ +L A+ A G LR
Sbjct: 188 IEDVVMNAEAYVAEGVKEITLLGQNVNSYGRDLYGSPRFADVLKAVAAT----GVERLRF 243
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + + + IA + LH+PVQSGSD +L
Sbjct: 244 ATSHPKDLTDEV--IAAFGELDNLMPALHLPVQSGSDRIL 281
>gi|260438409|ref|ZP_05792225.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
DSM 2876]
gi|292808995|gb|EFF68200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
DSM 2876]
Length = 473
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 141/287 (49%), Gaps = 18/287 (6%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
+ K G+ T +++TFGC N DSE +AG L A G+ TDN EEAD + NTC+V+ +
Sbjct: 31 AEKKGGSLTYHIQTFGCQMNARDSEKLAGILEAAGFVHTDN-EEADFVIYNTCSVRENAN 89
Query: 112 SAMDTLIAKCKSAKKP-----LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEV 161
+ + + + K KK + + GC+ Q ++++++ + IV G I + E+
Sbjct: 90 NRLYGHLGRMKVVKKNNPDMLIAICGCMMQEPDEIEKIKTKYKFIDIVFGTHNIFKFAEL 149
Query: 162 VEETL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
V L +G + + DLP VR+ F + I GC C+YC + RG
Sbjct: 150 VHTKLNSEGMIIDIWKDTNQIVEDLPDVRKYTFKSGVNIMYGCNNFCSYCIVPYVRGRER 209
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTML 278
S + ++ V + +GVKEV L ++ +YG+ + PI ++ E+ +G +
Sbjct: 210 SREPKDIIREVERFVKEGVKEVMLLGQNVNSYGKTL--ENPISFAELLKEVSKVEGLERI 267
Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
R +P + + L E V P V +H+P+QSGS +L + +
Sbjct: 268 RFMTPHPKDLSDELIETMAVT--PKVCHHIHLPLQSGSSRILKLMNR 312
>gi|443639819|ref|ZP_21123820.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21196]
gi|443406470|gb|ELS65050.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
subsp. aureus 21196]
Length = 514
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 134/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC C YC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCIYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|334119196|ref|ZP_08493283.1| Ribosomal protein S12 methylthiotransferase rimO [Microcoleus
vaginatus FGP-2]
gi|333458667|gb|EGK87284.1| Ribosomal protein S12 methylthiotransferase rimO [Microcoleus
vaginatus FGP-2]
Length = 436
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 150/293 (51%), Gaps = 30/293 (10%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI GC N+ D+E+M G L+ GY + N E AD ++NTC+ +++ + ++ TL+
Sbjct: 6 TIAFTHLGCEKNRIDTEHMIGLLAQAGYQVDSNEELADYVVVNTCSFIQAAREESVRTLV 65
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
+ A K +V+ GC+ Q + L EL E V+IVG ++V V+++ KG V L+
Sbjct: 66 -ELAEANKKVVITGCMAQHFQQELLDELPEAVAIVGTGDYHKIVNVMQQVEKGDRVSLVS 124
Query: 176 RKKLPALD--LPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D P+ R ++ V L I GC C +C H RG+ S T+ES+V +
Sbjct: 125 SEPTYIADETTPRYRTTSEGVAYLRIAEGCDYRCAFCIIPHLRGNQRSRTIESIVAEAKQ 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAI-VAELPPDGSTMLRIGMTNP---- 285
+ ++GVKE+ L S+ T YG+DI L LL A+ ++P +R+ P
Sbjct: 185 LASEGVKEIILISQITTNYGKDIYGEPKLAELLRALGEVDVP-----WIRMHYAYPTGLT 239
Query: 286 PFILEHLKEIAEVL---------RHPCVYSFLHVPVQSG-SDAVLSVSQKIVP 328
P ++E ++E VL HP + ++ P Q+G +DA++ + +P
Sbjct: 240 PQVVEAIRETPNVLPYLDLPLQHSHPEILRAMNRPFQAGINDAIVDRLKAALP 292
>gi|345860080|ref|ZP_08812407.1| RNA modification enzyme, MiaB family protein [Desulfosporosinus sp.
OT]
gi|344326824|gb|EGW38275.1| RNA modification enzyme, MiaB family protein [Desulfosporosinus sp.
OT]
Length = 443
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 142/280 (50%), Gaps = 27/280 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDT 116
T+ + + T GC NQ DSE M+G L A Y T+ EEA+I ++NTCT ++S + +++T
Sbjct: 2 TKKVAVVTLGCPKNQVDSEVMSG-LLAQDYIFTEYPEEAEIIVVNTCTFIQSAKEESIET 60
Query: 117 LIA----KCKSAKKPLVVAGCV-----PQGSRDLKELEGVSIVG-VQQIDRVVEVVEET- 165
+ K + + L+ GC+ P+ +D+ EL+GV G + +I +V+ E+T
Sbjct: 61 IFEMAGFKQSGSCQTLIATGCLAQRYGPELMQDIPELDGVLGTGNIDEITEIVQAAEDTR 120
Query: 166 ---LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
+K LH +K+P K ++ + + GC CTYC + RGH S
Sbjct: 121 MTLIKPGAPNFLHDEKMPR----KRSTPDYLAYVKVAEGCDNYCTYCVIPYVRGHFRSRP 176
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRI 280
ES++ V+ + A GVKE+ + ++DT YG D+ + LP L+ + +G +R+
Sbjct: 177 EESVIQEVQDMAAQGVKEIMVMAQDTTRYGFDLSGELRLPQLIRQLAR---IEGIEWIRL 233
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P + L I + + P V ++ +P+Q + +L
Sbjct: 234 MYCYPERFTDEL--IETMRQEPKVCKYIDLPLQHADNKIL 271
>gi|238924037|ref|YP_002937553.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium rectale ATCC
33656]
gi|238875712|gb|ACR75419.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium rectale ATCC
33656]
gi|291524773|emb|CBK90360.1| SSU ribosomal protein S12P methylthiotransferase [Eubacterium
rectale DSM 17629]
Length = 441
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 136/271 (50%), Gaps = 23/271 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI----- 118
+ GC N DSEYM G L+ G +TD+ +ADI ++N+C + + +++T++
Sbjct: 7 SLGCDKNLVDSEYMIGMLANDGIEMTDDETQADIIIVNSCCFIGDAKEESINTILEMAQY 66
Query: 119 ---AKCKSAKKPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVR 172
KCKS L+V GC+ Q +D KE+ V +I+G D +VE V ETL+ H
Sbjct: 67 KETGKCKS----LIVTGCLAQRYKDEIFKEIPEVDAILGTNSYDTIVEAVHETLEKHRYS 122
Query: 173 LLHR-KKLPALDLPK-VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
LH + LP++ + V L I GC CTYC RG S +E L+ +
Sbjct: 123 NLHTLEGLPSIKTKRIVTTGGHFAYLKIAEGCNKNCTYCVIPSVRGRYRSVPMEDLIEQA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFIL 289
++++ G KE+ L +++T YG D+ L+ ++ EL G +RI P I
Sbjct: 183 KSLVEQGAKELILVAQETTLYGVDLYGEKS--LHKLLDELNKISGLFWIRIMYCYPEEIY 240
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ L I +++ V +L +P+Q +D +L
Sbjct: 241 DEL--IESMIKDEKVCHYLDMPIQHCNDDIL 269
>gi|348590646|ref|YP_004875108.1| tRNA-i(6)A37 methylthiotransferase [Taylorella asinigenitalis MCE3]
gi|347974550|gb|AEP37085.1| tRNA-i(6)A37 methylthiotransferase [Taylorella asinigenitalis MCE3]
Length = 469
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 143/283 (50%), Gaps = 25/283 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KTFGC N+ DSE MA L+A G LTDN EEAD+ L+NTC+++ +Q + + +
Sbjct: 33 LYIKTFGCQMNEYDSEKMADVLNAEKGLELTDNPEEADVILLNTCSIREKAQEKVFSDLG 92
Query: 120 KCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ KK + V GCV +G+ L+ V IV G Q + R+ E++E+ K
Sbjct: 93 RINLLKKKKPDLLIGVGGCVASQEGATILQRAPYVDIVFGPQTLHRLPELIEQ--KESTG 150
Query: 172 RLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
R P ++ LP R N + I GC C+YC + RG S +E ++
Sbjct: 151 RAQVDVSFPEIEKFDHLPPARVNGPTAYVSIMEGCSKYCSYCVVPYTRGEEISRPLEDVL 210
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V + GVKE+ L ++ AY +G I A++ EL + + RI +
Sbjct: 211 VEVADLADQGVKEINLLGQNVNAYRGSVGEQGEIADFAMLLELIHEIPGVERIR-----Y 265
Query: 288 ILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSVSQK 325
I H KE+ + L + P + FLH+PVQ+GSD VL+ ++
Sbjct: 266 ITSHPKEMTKRLIEAHGKLPKLVPFLHLPVQAGSDRVLAAMKR 308
>gi|374581786|ref|ZP_09654880.1| ribosomal protein S12 methylthiotransferase RimO [Desulfosporosinus
youngiae DSM 17734]
gi|374417868|gb|EHQ90303.1| ribosomal protein S12 methylthiotransferase RimO [Desulfosporosinus
youngiae DSM 17734]
Length = 443
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 143/279 (51%), Gaps = 25/279 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDT 116
T+ + + T GC NQ DSE M+G L A + +N EEAD+ ++NTCT ++S + +++
Sbjct: 2 TKKVAVVTLGCPKNQVDSEVMSG-LLAQNHIFIENPEEADVIIVNTCTFIQSAKEESIEA 60
Query: 117 LIA----KCKSAKKPLVVAGCVPQ--GS---RDLKELEGVSIVGVQQIDRVVEVVEETLK 167
+ K A + L+ GC+ Q GS +D+ EL+GV +G ID + ++VE T +
Sbjct: 61 IFEMASLKKTGACRTLIATGCLAQRYGSELMQDIPELDGV--LGTGNIDEITKLVE-TAE 117
Query: 168 GHEVRLLHRKKLPALDLPKVRRNK----FVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
G L+ L ++ R + ++ + + GC CTYC + RGH S T
Sbjct: 118 GSRTSLIKEGAPDFLHTEQMARIRSTPDYLAYVKVAEGCDNYCTYCVIPYVRGHFRSRTE 177
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG 281
ES++ V+ + A GVKE+ + +DT YG+D+ + LP L+ + +G +R+
Sbjct: 178 ESVILEVQEMAAQGVKEILVMGQDTTRYGQDLYKELRLPQLIRKLAG---IEGIEWIRLM 234
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P + L I + + P V ++ +P+Q + +L
Sbjct: 235 YCYPERFTDEL--IETMRQEPKVCKYIDLPLQHADNKIL 271
>gi|167625134|ref|YP_001675428.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
halifaxensis HAW-EB4]
gi|229890651|sp|B0TR38.1|MIAB_SHEHH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|167355156|gb|ABZ77769.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella halifaxensis
HAW-EB4]
Length = 475
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 143/287 (49%), Gaps = 36/287 (12%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KT+GC N+ DS MA L + GY LTDN+EEAD+ L+NTC+++ +Q +
Sbjct: 2 SKKLHIKTWGCQMNEYDSSKMADLLDEYEGYTLTDNAEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKS--AKKPLV---VAGCVP-QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKG 168
+ + K+ KKP + V GCV Q + +KE I G Q + R+ E++++ G
Sbjct: 62 QLGRWKTLKDKKPELIIGVGGCVASQEGKAIKERAQCVDLIFGPQTLHRLPEMIDQIRAG 121
Query: 169 H---------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
E+ R P D P + FV I+ GC C++C + RG
Sbjct: 122 KKAVIDVSFPEIEKFDRLPEPRADGP----SAFVSIME---GCSKYCSFCVVPYTRGEEV 174
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG----RDIGVNLPILLNAIVAELPPDGS 275
S ++ ++ + + GV+EV L ++ AY D LL + A DG
Sbjct: 175 SRPLDDIILEIAQLAEQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAA---IDGI 231
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLS 321
LR ++P +E ++I +V P + SFLH+PVQSGSD +L+
Sbjct: 232 DRLRFTTSHP---IEFTQDIIDVYEDTPELVSFLHLPVQSGSDLILT 275
>gi|428318666|ref|YP_007116548.1| SSU ribosomal protein S12P methylthiotransferase [Oscillatoria
nigro-viridis PCC 7112]
gi|428242346|gb|AFZ08132.1| SSU ribosomal protein S12P methylthiotransferase [Oscillatoria
nigro-viridis PCC 7112]
Length = 440
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 139/277 (50%), Gaps = 30/277 (10%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI GC N+ D+E+M G L+ GY + N E AD ++NTC+ +++ + ++ TL+
Sbjct: 6 TIAFSHLGCEKNRIDTEHMIGLLAQAGYQVDSNEELADYVVVNTCSFIQAAREESVRTLV 65
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
+ A K +V+ GC+ Q + L EL E V+IVG ++V+V+++ KG V L+
Sbjct: 66 -ELAEANKKVVITGCMAQHFQQELLDELPEAVAIVGTGDYHKIVDVMQQVEKGDRVSLVS 124
Query: 176 RKKLPALD--LPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D P+ R ++ V L I GC C +C H RG+ S T+ES+V +
Sbjct: 125 SEPTYIADETTPRYRTTSEGVAYLRIAEGCDYRCAFCIIPHLRGNQRSRTIESIVAEAKQ 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR-IGMTNPPFILEH 291
+ ++GVKE+ L S+ T YG+DI P + +LR +G + P+I H
Sbjct: 185 LASEGVKEIILISQITTNYGKDIYGE-------------PKLAELLRALGEVDVPWIRMH 231
Query: 292 L--------KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ +A + P V +L +P+Q +L
Sbjct: 232 YAYPTGLTPQVVAAIRETPNVLPYLDLPLQHSHPEIL 268
>gi|334128879|ref|ZP_08502757.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Centipeda periodontii DSM
2778]
gi|333386121|gb|EGK57341.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Centipeda periodontii DSM
2778]
Length = 437
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 134/280 (47%), Gaps = 34/280 (12%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL + GY T+ +ADI LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNIADAERMEGQLQSAGYVRTEEMADADIILINTCCVRETAEDKVYGKIGEIKKIK 69
Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV----GVQQIDRVVE--------VVEETL 166
+ +AGC+ Q D ++ + V VQ++ R+V VV+ TL
Sbjct: 70 EQNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELARIVAEIAAEHSPVVDVTL 129
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
E+ A +LP R KF +PI GC CTYC + RG S E +
Sbjct: 130 SDSEI---------AENLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEV 180
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRD-IGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V VR +A+G +EV L ++ +YG+D + LL +V E+ +G +R ++P
Sbjct: 181 VAEVRRAVAEGYREVTLLGQNVNSYGKDHRAADFADLLR-MVDEV--EGIRRVRFMTSHP 237
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
I + L + + H C + +H+PVQ GS +L +
Sbjct: 238 KDISDKLIDTIQSGTHICEH--IHLPVQYGSTRILKAMNR 275
>gi|123966699|ref|YP_001011780.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
9515]
gi|229890602|sp|A2BY12.1|MIAB_PROM5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123201065|gb|ABM72673.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
9515]
Length = 464
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 25/298 (8%)
Query: 45 LSKTGSLSPKIPGTETI---YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
L+KT K P E+I ++ TFGC N++DSE MAG L GY+ + +AD+ L
Sbjct: 2 LTKTIQEEKKTPKDESIGSYWITTFGCQMNKADSERMAGTLEKMGYSRAIDELKADLVLY 61
Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVPQGS-----RDLKELEGVSIVG 151
NTCT++ +Q + + + + K LVVAGC+ Q R + EL+ I+G
Sbjct: 62 NTCTIRDSAQQKVYSFLGRQIKRKHSLPKLKLVVAGCLAQQEGESLLRRVPELD--LIMG 119
Query: 152 VQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFV-EILPINVGCLGACTYCK 210
Q ++ + ++E G++V + + + D+ RR+ + + I GC C+YC
Sbjct: 120 PQHVNNLENLLERVDSGNQV-VATEETFISEDITNARRDSTICGWVNIIYGCNERCSYCV 178
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLN 264
RG S +++ ++T+ + KE+ L ++ AYGRD+ G L +
Sbjct: 179 VPSVRGKEQSRYPKAIKSEIQTLAQNNYKEITLLGQNIDAYGRDLPVTTKEGRKENTLTD 238
Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ DG +R ++P + + L + L C + H+P QSG+D +L +
Sbjct: 239 LLYFIHDVDGIRRIRFSTSHPKYFSKRLIKACYELDKVCEH--FHIPFQSGNDEILRL 294
>gi|34558083|ref|NP_907898.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Wolinella
succinogenes DSM 1740]
gi|81653788|sp|Q7MR25.1|MIAB_WOLSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|34483801|emb|CAE10798.1| conserved hypothetical protein-2-methylthioadenine synthetase
[Wolinella succinogenes]
Length = 433
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 139/277 (50%), Gaps = 14/277 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ ++++T GC+ N DSE+M +L A GY LTD+ +EAD+ LINTC+V+ + + +
Sbjct: 2 SKKLFIQTLGCAMNVRDSEHMIAELEAKEGYTLTDDPKEADLILINTCSVREKPERKLFS 61
Query: 117 LIAKCKSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
I + KK + V GC GS LK+ VS V G + + ++ V+ + K E
Sbjct: 62 EIGQFSKEKKEEAKIGVCGCTASHLGSEILKKAPSVSFVLGARNVSKISRVIHQE-KAVE 120
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + + RN + ++ I++GC C YC H RG S + ++G
Sbjct: 121 VATDYDD--SSYVFATGSRNDYKAMVNISIGCDKKCAYCIVPHTRGQEISVPSDLILGEA 178
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLP-ILLNAIVAELPP-DGSTMLRIGMTNPPFI 288
R + + GVKE+ L ++ YGR P I ++ EL +G LR +P +
Sbjct: 179 RRLASAGVKEILLLGQNVNHYGRRFSSAHPKISFTELLRELSQVEGIERLRFTSPHPLHM 238
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E E +P + +H+P+QSGS +LS+ ++
Sbjct: 239 DDEFLE--EFASNPKICKSIHMPLQSGSTRILSLMRR 273
>gi|121535290|ref|ZP_01667104.1| MiaB-like tRNA modifying enzyme YliG [Thermosinus carboxydivorans
Nor1]
gi|121306175|gb|EAX47103.1| MiaB-like tRNA modifying enzyme YliG [Thermosinus carboxydivorans
Nor1]
Length = 441
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 141/273 (51%), Gaps = 17/273 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLIAKCKS 123
+ GC+ N D+E M G L+ A+ D+ +ADI ++NTC + S + ++ T++ +
Sbjct: 8 SLGCAKNLVDTEVMLGILTNNNIAIVDDPGDADILIVNTCGFIDSAKEESITTILQMAEY 67
Query: 124 AK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLLH- 175
K + L+VAGC+ Q + L EL V +IVG R++E V+ L G V ++
Sbjct: 68 KKESNCRALIVAGCLGQRYQQELLDELPEVDAIVGTGAWHRIMEAVQAALSGQRVLVIGP 127
Query: 176 RKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ + +P++ K+ + + GC C+YC RG S ES+V V+ +
Sbjct: 128 TETIYDETMPRIYTTPKYSAYVKVAEGCSNCCSYCVIPLVRGRFRSRPQESIVSEVKRLA 187
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
A+G+KE+ L ++DT +YGRD+ + LP LL A+V +G +R+ P + + L
Sbjct: 188 ANGIKEINLIAQDTTSYGRDLYGQLQLPQLLRALVQ---IEGIEWIRLLYCYPRYFTDEL 244
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
E+ + + P + ++ +P+Q D +L +
Sbjct: 245 IEV--IAKEPKICKYVDLPLQHIHDDILKAMHR 275
>gi|399117018|emb|CCG19831.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
asinigenitalis 14/45]
Length = 469
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 143/283 (50%), Gaps = 25/283 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KTFGC N+ DSE MA L+A G LTDN EEAD+ L+NTC+++ +Q + + +
Sbjct: 33 LYIKTFGCQMNEYDSEKMADVLNAEKGLELTDNPEEADVILLNTCSIREKAQEKVFSDLG 92
Query: 120 KCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ KK + V GCV +G+ L+ V IV G Q + R+ E++E+ K
Sbjct: 93 RINLLKKKKPDLLIGVGGCVASQEGATILQRAPYVDIVFGPQTLHRLPELIEQ--KESTG 150
Query: 172 RLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
R P ++ LP R N + I GC C+YC + RG S +E ++
Sbjct: 151 RAQVDVSFPEIEKFDHLPPARVNGPTAYVSIMEGCSKYCSYCVVPYTRGEEISRPLEDVL 210
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V + GVKE+ L ++ AY +G I A++ EL + + RI +
Sbjct: 211 VEVADLADQGVKEINLLGQNVNAYRGTVGEQGEIADFAMLLELVHEIPGVERIR-----Y 265
Query: 288 ILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSVSQK 325
I H KE+ + L + P + FLH+PVQ+GSD VL+ ++
Sbjct: 266 ITSHPKEMTKRLIEAHGKLPKLVPFLHLPVQAGSDRVLAAMKR 308
>gi|229047455|ref|ZP_04193047.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676]
gi|228723899|gb|EEL75252.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676]
Length = 509
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDPLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>gi|427729698|ref|YP_007075935.1| ribosomal protein S12 methylthiotransferase RimO [Nostoc sp. PCC
7524]
gi|427365617|gb|AFY48338.1| ribosomal protein S12 methylthiotransferase RimO [Nostoc sp. PCC
7524]
Length = 466
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 140/291 (48%), Gaps = 30/291 (10%)
Query: 46 SKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT 105
KTGS + TI + GC N+ D+E+M G L GY + N E AD ++NTC+
Sbjct: 20 EKTGSFFQNMGEKPTIAISHLGCEKNRIDTEHMLGLLVEAGYGVDTNEELADYVIVNTCS 79
Query: 106 -VKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQ--GSRDLKEL-EGVSIVGVQQIDRVVEV 161
+++ + ++ TL+ + A K +V+ GC+ Q S+ L EL E V++VG ++V V
Sbjct: 80 FIEAAREESVKTLV-ELAEANKKIVITGCMAQHFQSQLLDELPEAVAVVGTGDYHKIVNV 138
Query: 162 VEETLKGHEVRLLHRKKLPALD--LPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHL 218
+E +G V+ + + D P+ R + V L + GC C +C H RG+
Sbjct: 139 IERVEQGERVKQVSAEPTYIADETTPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQ 198
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML 278
S T+ES+V + + + GV+E+ L S+ T YG DI P + +L
Sbjct: 199 RSRTIESIVAEAKQLASQGVQEIILISQITTNYGLDIYGK-------------PKLAELL 245
Query: 279 R-IGMTNPPFILEHL--------KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
R +G N P+I H + IA + P V +L +P+Q +L
Sbjct: 246 RALGKVNVPWIRMHYAYPTGLTPEVIAAIQETPNVLPYLDLPLQHSHPEIL 296
>gi|390440335|ref|ZP_10228674.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis sp. T1-4]
gi|389836262|emb|CCI32800.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis sp. T1-4]
Length = 446
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 138/280 (49%), Gaps = 20/280 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G KE+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYKEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L + + L P V H+P QSG + VL ++
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDVLKAMKR 284
>gi|434394557|ref|YP_007129504.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Gloeocapsa sp. PCC 7428]
gi|428266398|gb|AFZ32344.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Gloeocapsa sp. PCC 7428]
Length = 453
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 142/278 (51%), Gaps = 26/278 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPYQADLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G L+ + + +V G Q +R+ +++E+ G+++
Sbjct: 69 AKRKHEHPELTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLQDLLEQVFAGNQIVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G +L L + + V ++P G LR +
Sbjct: 187 ELGRQGFKEVTLLGQNIDAYGRDLPGATPEGRHLHTLTDLLYYVHDVP--GIERLRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+P + E L + AE+ P V H+P QSG + VL
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVL 279
>gi|431794114|ref|YP_007221019.1| 30S ribosomal protein S12 [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430784340|gb|AGA69623.1| SSU ribosomal protein S12P methylthiotransferase
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 442
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 134/273 (49%), Gaps = 27/273 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
T GC NQ DSE M G + Y + E+ADI +INTCT ++S ++DT++ +
Sbjct: 9 TLGCPKNQVDSEIMTGHIGE-KYQVVGEPEQADIIIINTCTFIESAKAESIDTILEMAQY 67
Query: 124 AK----KPLVVAGCVPQGSRD-----LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ K L+ GC+ Q D + EL+GV +G I ++E +EE K +VR +
Sbjct: 68 KEQGQCKTLMATGCLAQRYGDELLAEIPELDGV--MGTGNISEILETIEEAEKT-KVRKI 124
Query: 175 HRKKLPAL----DLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
PA +P+VR + K + + GC CTYC RGH S ES++
Sbjct: 125 S-ADAPAFIYDEAMPRVRLSPKQYAYVKVAEGCDNFCTYCIIPQVRGHFRSRKQESIINE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V+ + +GVKEV L ++DT YG+DI LP L+ I +G +R+ P
Sbjct: 184 VKAMAQEGVKEVLLIAQDTTRYGKDIYGEYRLPSLIKEIAK---IEGIEWIRLMYCYPEL 240
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ L E+ + P V +L +P+Q + VL
Sbjct: 241 FTDDLIEVMK--ETPKVCRYLDLPLQHAHNKVL 271
>gi|291528906|emb|CBK94492.1| SSU ribosomal protein S12P methylthiotransferase [Eubacterium
rectale M104/1]
Length = 441
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 135/271 (49%), Gaps = 23/271 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI----- 118
+ GC N DSEYM G L+ G +TD+ +ADI ++N+C + + +++T++
Sbjct: 7 SLGCDKNLVDSEYMIGMLANDGIEMTDDETQADIIIVNSCCFIGDAKEESINTILEMAQY 66
Query: 119 ---AKCKSAKKPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVR 172
KCKS L+V GC+ Q +D KE+ V +I+G D +VE V ETL+ H
Sbjct: 67 KETGKCKS----LIVTGCLAQRYKDEIFKEIPEVDAILGTNSYDTIVEAVHETLEKHRYS 122
Query: 173 LLHR-KKLPALDLPK-VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
LH + LP++ + V L I GC CTYC RG S +E L+ +
Sbjct: 123 NLHTLEGLPSIKTKRIVTTGGHFAYLKIAEGCNKNCTYCVIPSVRGRYRSVPMEDLIEQA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L +++T YG D+ L+ ++ EL G +RI P I
Sbjct: 183 KNLVEQGAKELILVAQETTLYGVDLYGEKS--LHKLLDELNKISGLFWIRIMYCYPEEIY 240
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ L I +++ V +L +P+Q +D +L
Sbjct: 241 DEL--IESMIKDEKVCHYLDMPIQHCNDDIL 269
>gi|435853697|ref|YP_007315016.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Halobacteroides halobius DSM 5150]
gi|433670108|gb|AGB40923.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Halobacteroides halobius DSM 5150]
Length = 442
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 138/276 (50%), Gaps = 23/276 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC N+ DSE +AG L GY D +AD+ ++NTC V+ ++ + + +
Sbjct: 8 FIRTYGCQMNEHDSEKLAGVLKDIGYKPADELAKADVIILNTCCVRENAELKVFGKLGEI 67
Query: 122 KSAKKP---LVVA--GCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETLKGHE- 170
K KK L+V GC+ Q + +++ V IV G I R E+++E ++
Sbjct: 68 KQIKKENPGLIVGICGCMMQQEEVVNKIKQRYNFVDIVFGTHNIHRFPELLQEIKAENQS 127
Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
V + + D+P R + I GC CTYC + RG S + E ++
Sbjct: 128 LVEVWDDSREVIGDMPTNREEDHKAKVNIIHGCDNYCTYCIVPYVRGSERSRSQEDIIKE 187
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAI--VAELPPDGSTMLRIGMTNP 285
++ ++ADGVKEV L ++ +YG+D+G +L LL A+ + LP +R ++P
Sbjct: 188 IKKLVADGVKEVMLLGQNVNSYGKDLGQDLDFADLLTAVNKIKGLP-----RIRFMTSHP 242
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ L E L + C + H+P+QSGSD +L
Sbjct: 243 RDFSDKLIEAVTNLENVCEH--FHLPIQSGSDKLLK 276
>gi|363891403|ref|ZP_09318582.1| ribosomal protein S12 methylthiotransferase RimO [Eubacteriaceae
bacterium CM2]
gi|361965460|gb|EHL18442.1| ribosomal protein S12 methylthiotransferase RimO [Eubacteriaceae
bacterium CM2]
Length = 438
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 142/290 (48%), Gaps = 41/290 (14%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTL 117
E +++ GCS N D+E M L+ GY +T++ EA I ++NTC +++ + ++DT+
Sbjct: 3 EKFILESLGCSKNLVDAEEMVYILNKNGYEMTEDINEATIAIVNTCGFIETAKEESIDTI 62
Query: 118 --IAKCKSAK-KPLVVAGCVPQGSRDLKEL-----EGVSIVGVQQIDRVVEVVEETLKGH 169
IA+ K K L+V GC+ Q R KEL E + +G D + V+ KG
Sbjct: 63 FEIARYKQENLKYLIVTGCLAQ--RYYKELKEKIPEVDAFLGTTSYDTIYNVI----KGL 116
Query: 170 EV------------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
E+ +L H KK K+ + + + I GC +CTYC RG
Sbjct: 117 EIGQDNSLILNADRKLDHTKK-------KILTDNYYAYVKIAEGCDNSCTYCIIPRLRGR 169
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGS 275
S +E ++ V+ + + G+KE+ L ++DT YG DI LP LL + +E+ DG
Sbjct: 170 YKSRGIEEIITEVQDLASQGIKEIILIAQDTSKYGLDIYKEKKLPELLRKL-SEI--DGI 226
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+R T P I E L + EV + V S+ +P+Q +D +L + +
Sbjct: 227 KWIRFLYTYPEDITEEL--VQEVKNNDKVCSYFDIPIQHANDRILKLMNR 274
>gi|297544398|ref|YP_003676700.1| MiaB-like tRNA modifying protein [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842173|gb|ADH60689.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 449
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 133/268 (49%), Gaps = 18/268 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV--KSPSQSAMDTLIAKCK 122
T GC NQ ++E MA GY + D E+AD+++INTCTV +S +S + A+ K
Sbjct: 21 TLGCKVNQYETEVMAELFKKAGYEVVDFDEKADVYVINTCTVTNRSDMKSRQEIRKARKK 80
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEV-----RLLH 175
+ +V GC Q S +D+ L V I +G + D++VE+VEE + H+ ++
Sbjct: 81 NPNAVVVAVGCYVQVSPKDVFSLPEVDIAIGTKNKDKIVELVEEFTQKHQKLSVVNNIMT 140
Query: 176 RKKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+K+ ++ R +V+I GC CTYC +ARG + S E ++ V+
Sbjct: 141 QKEYEEFEVTAYTERTRAYVKIQD---GCNQYCTYCIIPYARGPVRSREPEKILEEVKRF 197
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
G KE+ L+ +YG+D+ N+ LL+ I DG +R+ P F+ E
Sbjct: 198 ADSGYKEIVLTGIHIASYGKDLK-NIG-LLDIIKRIHEIDGIKRIRLSSIEPVFLTEEF- 254
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ E+ + P + HV +QSG D L
Sbjct: 255 -VKEIAKLPKMCRHYHVSLQSGCDETLK 281
>gi|443319923|ref|ZP_21049066.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Gloeocapsa sp. PCC 73106]
gi|442790366|gb|ELR99956.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Gloeocapsa sp. PCC 73106]
Length = 451
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 141/280 (50%), Gaps = 22/280 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T+ ++ TFGC N++DSE MAG L G+ +++ +A++ L NTCT++ ++ + +
Sbjct: 9 TQRYHITTFGCQMNKADSERMAGILEEMGFEWSEDPNQANLILYNTCTIRDNAEQKVYSY 68
Query: 118 IAKCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ + K+ L+VAGCV Q G + L+ + + +V G Q +++ ++E+ G+
Sbjct: 69 LGRQAKRKQTEPNLTLIVAGCVAQQEGEQLLRRVPELDLVMGPQHANQLENLLEQVFAGN 128
Query: 170 EVRLLHRKKLPAL-DLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESL 226
+V + + + L D+ K RR V +NV GC CTYC + RG S T E++
Sbjct: 129 QV--VATEAIEILEDITKPRRESQVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAI 185
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRI 280
+ T+ G KE+ L ++ AYGRD+ G +L + + G +R
Sbjct: 186 RKEMETLGQQGYKEITLLGQNIDAYGRDLPGTTSTGRHLHTFTDLLHYVHDVQGIERIRF 245
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + E L + L P V H+P QSG + +L
Sbjct: 246 ATSHPRYFTERLIRACQEL--PKVCKHFHIPFQSGDNQIL 283
>gi|292898859|ref|YP_003538228.1| MiaB protein [Erwinia amylovora ATCC 49946]
gi|291198707|emb|CBJ45816.1| MiaB protein (methylthiolation of isopentenylated A37 derivatives I
rRNA) [Erwinia amylovora ATCC 49946]
Length = 474
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 149/291 (51%), Gaps = 36/291 (12%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFG 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ + K K+ + V GCV +G++ + V IV G Q + R+ E++ +++G
Sbjct: 62 LLGRWKKLKEANPNLIIGVGGCVASQEGAKIRQRASCVDIVFGPQTLHRLPEMI-NSVRG 120
Query: 169 H----------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
E+ R P D P FV I+ GC CT+C + RG
Sbjct: 121 SKSPVVDVSFPEIEKFDRMPEPRADGP----TAFVSIME---GCNKYCTFCVVPYTRGEE 173
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGS 275
S + ++ V + A GV+EV L ++ AY D G+ L +VA + DG
Sbjct: 174 VSRPADDILFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAI--DGI 231
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+R ++P +E +I EV R P + S+LH+PVQSG+D +L++ ++
Sbjct: 232 DRIRFTTSHP---IEFTDDIIEVYRDTPELVSYLHLPVQSGADRILTLMKR 279
>gi|292487621|ref|YP_003530493.1| hypothetical protein EAMY_1135 [Erwinia amylovora CFBP1430]
gi|428784556|ref|ZP_19002047.1| UPF0004 protein [Erwinia amylovora ACW56400]
gi|291553040|emb|CBA20085.1| UPF0004 protein PA3980 [Erwinia amylovora CFBP1430]
gi|426276118|gb|EKV53845.1| UPF0004 protein [Erwinia amylovora ACW56400]
Length = 480
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 149/291 (51%), Gaps = 36/291 (12%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 8 TKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFG 67
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ + K K+ + V GCV +G++ + V IV G Q + R+ E++ +++G
Sbjct: 68 LLGRWKKLKEANPNLIIGVGGCVASQEGAKIRQRASCVDIVFGPQTLHRLPEMI-NSVRG 126
Query: 169 H----------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
E+ R P D P FV I+ GC CT+C + RG
Sbjct: 127 SKSPVVDVSFPEIEKFDRMPEPRADGP----TAFVSIME---GCNKYCTFCVVPYTRGEE 179
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGS 275
S + ++ V + A GV+EV L ++ AY D G+ L +VA + DG
Sbjct: 180 VSRPADDILFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAI--DGI 237
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+R ++P +E +I EV R P + S+LH+PVQSG+D +L++ ++
Sbjct: 238 DRIRFTTSHP---IEFTDDIIEVYRDTPELVSYLHLPVQSGADRILTLMKR 285
>gi|404329066|ref|ZP_10969514.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sporolactobacillus vineae DSM 21990 = SL153]
Length = 495
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 138/272 (50%), Gaps = 14/272 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N++DSE MAG L A GY T+++ AD+ L+NTC ++ +++ + I + K
Sbjct: 54 IETYGCQMNEADSEVMAGILEAMGYRPTEDAALADVILVNTCAIRENAENRVFGHIGRMK 113
Query: 123 SAK--KPLVV---AGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
K KP ++ GC+ Q ++ L+ V ++ G I R+ ++++E L E
Sbjct: 114 PLKLEKPGLIIGLCGCMAQEETVVNKVLRTYPQVDLIFGTHNIHRLPQLLQEALFSKEMV 173
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ +LP R F + I GC CTYC + RG S E ++ V
Sbjct: 174 VEVWSKEGDIVENLPVARHGHFQAWVNIMFGCDKFCTYCIVPYTRGKERSRRPEEIISEV 233
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + G KEV L ++ AYG+D+ L ++ E+ G +R ++P +
Sbjct: 234 RDLARRGYKEVTLLGQNVNAYGKDLKDLDHYGLGNLMDEIRKIGIPRVRFMTSHPKDFDD 293
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
HL E+ + C + +H+PVQSG+ +L +
Sbjct: 294 HLIEVLGKGGNLCEH--IHLPVQSGNSDILKI 323
>gi|168334526|ref|ZP_02692687.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Epulopiscium sp. 'N.t.
morphotype B']
Length = 474
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 130/274 (47%), Gaps = 15/274 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++ TFGC N DSE + G L+ GY + + AD + NTC V+ ++ + +
Sbjct: 34 TFFIGTFGCQMNALDSEKIEGVLTKLGYTKAASEKTADFLIYNTCCVRENAELKIFGKLG 93
Query: 120 KCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGH 169
K KK + + GC+ Q LK L+ I G I ++ E+++ ++
Sbjct: 94 ALKHRKKKXPNFMVALCGCMMQQDVVLKTLKQKYKFVDIIFGTYNIYKLPELLQTRIETG 153
Query: 170 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E + + + DLP +R+++F + I GC CTYC + RG S V+ +
Sbjct: 154 ENIIDIWETHQEIVEDLPSIRKHQFKSCVNIMYGCNNFCTYCIVPYVRGRERSREVDDIY 213
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+V+ ++ DGVKE+ L ++ +YG+++ P + + DG +R ++P
Sbjct: 214 DQVKALVDDGVKEIMLLGQNVNSYGKNLATK-PTFTDLLERLASIDGLKRIRFMTSHPKD 272
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
L I + +H + LH+P+QSGS +L
Sbjct: 273 FSXQL--IDSIAKHDNICKGLHLPIQSGSTRILQ 304
>gi|376003145|ref|ZP_09780960.1| isopentenyl-adenosine A37 tRNA methylthiolase [Arthrospira sp. PCC
8005]
gi|423067069|ref|ZP_17055859.1| radical SAM methylthiotransferase, MiaB/RimO family [Arthrospira
platensis C1]
gi|375328470|emb|CCE16713.1| isopentenyl-adenosine A37 tRNA methylthiolase [Arthrospira sp. PCC
8005]
gi|406711355|gb|EKD06556.1| radical SAM methylthiotransferase, MiaB/RimO family [Arthrospira
platensis C1]
Length = 452
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 138/280 (49%), Gaps = 30/280 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G ++ +ADI L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILDEMGLTFVEDPNQADIVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K+ L+VAGCV Q R + EL+ V +G Q +R+ +++E+ +G +V
Sbjct: 69 AKRKQENPNLTLIVAGCVAQQEGEALLRRVPELDLV--MGPQHANRLQDLLEQVFEGSQV 126
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ D+ K RR+ + +NV GC CTYC + RG S T E++
Sbjct: 127 VATEPINI-VEDITKPRRDSNITAW-VNVIYGCNERCTYCVVPNVRGTEQSRTPEAIRAE 184
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIG 281
+ + G KEV L ++ AYGRD+ + P L V ++P G +R
Sbjct: 185 MEELARAGYKEVTLLGQNIDAYGRDLPGSTPDGRHQHTLTDLLYYVHDIP--GIERIRFA 242
Query: 282 MTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + E L + AE+ P V H+P QSG + VL
Sbjct: 243 TSHPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDVL 279
>gi|330828617|ref|YP_004391569.1| tRNA methylthiotransferase [Aeromonas veronii B565]
gi|406678174|ref|ZP_11085352.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Aeromonas
veronii AMC35]
gi|423200831|ref|ZP_17187411.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Aeromonas
veronii AER39]
gi|423210697|ref|ZP_17197251.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Aeromonas
veronii AER397]
gi|328803753|gb|AEB48952.1| tRNA methylthiotransferase [Aeromonas veronii B565]
gi|404615082|gb|EKB12055.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Aeromonas
veronii AER397]
gi|404619402|gb|EKB16316.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Aeromonas
veronii AER39]
gi|404622860|gb|EKB19716.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Aeromonas
veronii AMC35]
Length = 477
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 147/283 (51%), Gaps = 20/283 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KT+GC N+ DS MA L A GY LT+ EEAD+ L+NTC+++ +Q +
Sbjct: 2 SKKLHIKTWGCQMNEYDSSKMADLLDASNGYTLTEEPEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKS--AKKP---LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K A KP + V GCV +G + V IV G Q + R+ +++E +G
Sbjct: 62 QLGRWKKLKANKPGLVIGVGGCVASQEGDAIRQRAPYVDIVFGPQTLHRLPAMIKEVQEG 121
Query: 169 HEVRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
++ + ++ D LP+ R + I GC CTYC + RG S ++ +
Sbjct: 122 RGAQVDIAFPEIEKFDSLPEPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPLDDV 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + + GV+EV L ++ AY D G+ L +VA + DG +R +
Sbjct: 182 LYEIAQLAQQGVREVNLLGQNVNAYRGPTFDGGICTFAELLRLVAAI--DGIDRIRYTTS 239
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+P +E +I EV + P V SFLH+PVQSGSD +L++ ++
Sbjct: 240 HP---IEFTDDIIEVYKDTPEVVSFLHLPVQSGSDRILTMMKR 279
>gi|428775987|ref|YP_007167774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothece sp. PCC 7418]
gi|428690266|gb|AFZ43560.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothece sp. PCC 7418]
Length = 447
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 142/278 (51%), Gaps = 26/278 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ TFGC N++DSE MAG L A GY D+ AD+ + NTCT++ ++ + + +
Sbjct: 10 HITTFGCQMNKADSERMAGILDAMGYQAEDDPYLADVVVYNTCTIRDNAEQKVYSYLGRQ 69
Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K KSA L+VAGCV Q G + L+ + + +V G Q +R+ +++E+ +G+++ +
Sbjct: 70 AKRKQKSADVTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLGDLLEQVQEGNQI-V 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
D+ K RR+ + +NV GC C+YC + RG S T E++ +
Sbjct: 129 ATEPIYIMEDITKPRRDSDITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAIREEME 187
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
+ G +EV L ++ AYGRD+ + P L V ++P G +R +
Sbjct: 188 ILAEQGYQEVTLLGQNIDAYGRDLPGSTPEGRHKHTFTDLLYYVHDVP--GIERIRFATS 245
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+P + E L + AE+ P V H+P QSG + VL
Sbjct: 246 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVL 280
>gi|188585813|ref|YP_001917358.1| MiaB family RNA modification protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350500|gb|ACB84770.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 446
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 133/273 (48%), Gaps = 20/273 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTD-NSEE---ADIWLINTCTVKSPSQSAMDTLIAK 120
TFGC NQ DSE + G+ ++D N +E D+ +INTCTV + I K
Sbjct: 11 TFGCKVNQYDSEALKELFQDRGFEISDWNPQELDNIDVAIINTCTVTHLADRKARQHIRK 70
Query: 121 CKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL--- 173
K V+A GC PQ + +K LEGV IV G++ +VE+VE+ L +
Sbjct: 71 LKRRNPNCVIAVTGCYPQTDPQTVKALEGVDIVHGIEDRSGLVELVEQALSKENIWQGAI 130
Query: 174 -LH----RKKLPALDLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
LH + + L + ++ ++ L I GC C+YC +ARGHL S E ++
Sbjct: 131 HLHDSRPKGEFENLKIKNFKKHDRTRHFLKIQEGCDQFCSYCIIPYARGHLRSRPPEDVI 190
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
++ +++G KE+ L+ + GAYGR+ NLP L + + G +R+ P
Sbjct: 191 SEIKQAVSNGFKEIVLTGINLGAYGRE-NSNLPNLATLLDKIIHLKGDYRIRLSSCEPQE 249
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
I L E+ C + LH+P+QSG + +L
Sbjct: 250 ITIGLLELVTNSEKICKH--LHIPLQSGDNEIL 280
>gi|291566663|dbj|BAI88935.1| tRNA-i(6)A37 modification enzyme MiaB [Arthrospira platensis
NIES-39]
Length = 452
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 138/280 (49%), Gaps = 30/280 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G ++ +ADI L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILDEMGLTFVEDPNQADIVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K+ L+VAGCV Q R + EL+ V +G Q +R+ +++E+ +G +V
Sbjct: 69 AKRKQENPNLTLIVAGCVAQQEGEALLRRVPELDLV--MGPQHANRLQDLLEQVFEGSQV 126
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ D+ K RR+ + +NV GC CTYC + RG S T E++
Sbjct: 127 VATEPINI-VEDITKPRRDSNITAW-VNVIYGCNERCTYCVVPNVRGTEQSRTPEAIRAE 184
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIG 281
+ + G KEV L ++ AYGRD+ + P L V ++P G +R
Sbjct: 185 MEELARAGYKEVTLLGQNIDAYGRDLPGSTPDGRHQHTLTDLLYYVHDIP--GIERIRFA 242
Query: 282 MTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + E L + AE+ P V H+P QSG + VL
Sbjct: 243 TSHPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDVL 279
>gi|312171728|emb|CBX79986.1| UPF0004 protein PA3980 [Erwinia amylovora ATCC BAA-2158]
Length = 480
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 149/291 (51%), Gaps = 36/291 (12%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 8 TKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFG 67
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ + K K+ + V GCV +G++ + V IV G Q + R+ E++ +++G
Sbjct: 68 LLGRWKKLKEANPDLIIGVGGCVASQEGAKIRQRASCVDIVFGPQTLHRLPEMI-NSVRG 126
Query: 169 H----------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
E+ R P D P FV I+ GC CT+C + RG
Sbjct: 127 SKSPVVDVSFPEIEKFDRMPEPRADGP----TAFVSIME---GCNKYCTFCVVPYTRGEE 179
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGS 275
S + ++ V + A GV+EV L ++ AY D G+ L +VA + DG
Sbjct: 180 VSRPADDILFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAI--DGI 237
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+R ++P +E +I EV R P + S+LH+PVQSG+D +L++ ++
Sbjct: 238 DRIRFTTSHP---IEFTDDIIEVYRDTPELVSYLHLPVQSGADRILTLMKR 285
>gi|383753868|ref|YP_005432771.1| putative tRNA-thiotransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365920|dbj|BAL82748.1| putative tRNA-thiotransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 446
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 141/292 (48%), Gaps = 19/292 (6%)
Query: 55 IPGTETIYMK--TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
I G Y+K +GC N +D+E MAGQL+A GY T++++ AD+ +INTC V+ ++
Sbjct: 4 IDGKAHRYVKFLVYGCQMNVADAERMAGQLAAIGYERTEDTDIADLLIINTCAVRETAED 63
Query: 113 AMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEE 164
+ I + K K+ + GC+ Q D +K + V G Q+ + +VV+E
Sbjct: 64 KVYGKIGEIKKLKRENPQLIFGITGCMAQKESDKLIKRAPHIDFVLGTGQVHELTKVVQE 123
Query: 165 TL--KGHEVRL-LHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+GH V L K PA+ P R +PI GC CTYC + RG
Sbjct: 124 IQQERGHVVNTALDAKVAPAIAEGSPIAREGSLSAWVPIMYGCNNFCTYCIVPYVRGRER 183
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
S E +V V +A G KEV L ++ +YG+D + L +V ++ +G +R
Sbjct: 184 SRRPEDVVKEVEQAVAQGYKEVTLLGQNVNSYGKDHKLATFAELLKMVDKV--EGIKRVR 241
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKS 331
++P + + + + H C + +H+PVQ GS+ +L ++ +S
Sbjct: 242 FMTSHPKDLSDEVIDAIAEGEHLCEH--IHLPVQYGSNHLLKAMNRVYTVES 291
>gi|17228717|ref|NP_485265.1| hypothetical protein alr1222 [Nostoc sp. PCC 7120]
gi|81853061|sp|Q8YXJ1.1|RIMO_NOSS1 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
Short=S12 MTTase; Short=S12 methylthiotransferase;
AltName: Full=Ribosome maturation factor RimO
gi|17130569|dbj|BAB73179.1| alr1222 [Nostoc sp. PCC 7120]
Length = 440
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 135/277 (48%), Gaps = 30/277 (10%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI + GC N+ D+E+M G L GY + N E AD ++NTC+ ++S + ++ TL+
Sbjct: 6 TIAISHLGCEKNRIDTEHMLGLLVKAGYGVDTNEELADYVIVNTCSFIESAREESVRTLV 65
Query: 119 AKCKSAKKPLVVAGCVPQ--GSRDLKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
+ A K +V+ GC+ Q ++ L+EL E V++VG ++V V+E +G V L+
Sbjct: 66 -ELAEANKKIVITGCMAQHFQTQLLEELPEAVAVVGTGDYHKIVSVIERAEQGERVTLVS 124
Query: 176 RKKLPALD--LPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D P+ R + V L + GC C +C H RG+ S T+ES+V
Sbjct: 125 AEPTYIADETTPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRSRTIESIVAEAEQ 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR-IGMTNPPFILEH 291
++A GV+E+ L S+ T YG DI P + +LR +G N P+I H
Sbjct: 185 LVAQGVQEIILISQITTNYGLDIYGK-------------PKLAELLRALGKINVPWIRMH 231
Query: 292 LKE--------IAEVLRHPCVYSFLHVPVQSGSDAVL 320
IA + P V +L +P+Q VL
Sbjct: 232 YAYPTGLTPDVIAAIQETPNVLPYLDLPLQHSHSEVL 268
>gi|210612282|ref|ZP_03289230.1| hypothetical protein CLONEX_01431 [Clostridium nexile DSM 1787]
gi|210151656|gb|EEA82663.1| hypothetical protein CLONEX_01431 [Clostridium nexile DSM 1787]
Length = 440
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 136/271 (50%), Gaps = 15/271 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA 119
I + GC N D+E M G L++ G+ + D+ E AD+ +INTC + + ++ T++
Sbjct: 3 ILFVSLGCDKNLVDTEVMLGLLASRGHQMVDSEEIADVIVINTCCFIHDAKEESIQTILE 62
Query: 120 KCKSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH-EV 171
+ K K L+V GC+ Q + + E+E V +++G D++VE ++E L GH V
Sbjct: 63 MAEYKKAGSCKALIVTGCLAQRYKQEIIDEIEEVDAVLGTTSYDKIVEAIDEALAGHTSV 122
Query: 172 RLLHRKKLPALDLPK-VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ LP ++ + V L I GC CTYC RG+ S +E L+
Sbjct: 123 EMTDIDALPLVESKRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGNFRSVPIERLLKEA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTNPPFIL 289
++A GVKE+ L +++T YG+D+ L+ ++ EL G +RI P I
Sbjct: 183 EDLVAQGVKEIILVAQETTLYGKDLYGEKS--LHKLLRELCKISGLRWIRILYCYPEEIT 240
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ L ++ + C ++L +P+Q SD +L
Sbjct: 241 DELIQVIKEEDKIC--NYLDLPIQHASDGIL 269
>gi|238795390|ref|ZP_04638905.1| hypothetical protein ymoll0001_9790 [Yersinia mollaretii ATCC
43969]
gi|238720509|gb|EEQ12310.1| hypothetical protein ymoll0001_9790 [Yersinia mollaretii ATCC
43969]
Length = 486
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 145/287 (50%), Gaps = 24/287 (8%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
P T+ +++KT+GC N+ DS MA L S GY LT+ E+AD+ L+NTC+++ +Q +
Sbjct: 12 PMTKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTETPEDADLLLLNTCSIREKAQEKV 71
Query: 115 DTLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETL 166
+L+ KS K+ + V GCV +G + V I+ G Q + R+ E++
Sbjct: 72 FSLLGHWKSLKEKNPELIIGVGGCVASQEGEHLRQRAPCVDIIFGPQTLHRLPEMINHVQ 131
Query: 167 KGH-EVRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
H V + ++ D LP+ R + I GC CT+C + RG S +
Sbjct: 132 GSHSSVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSD 191
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGA-----YGRDIGVNLPILLNAIVAELPPDGSTMLR 279
++ + + A GV+EV L ++ A Y DI + LL + A DG LR
Sbjct: 192 DILFEIAQLAAQGVREVNLLGQNVNAYRGPTYDGDI-CSFAELLRLVAA---IDGIDRLR 247
Query: 280 IGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
++P +E +I +V R P + SFLH+PVQSGSD +L++ ++
Sbjct: 248 FTTSHP---IEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKR 291
>gi|393200264|ref|YP_006462106.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
gi|327439595|dbj|BAK15960.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
Length = 511
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 135/274 (49%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM-----D 115
Y++T+GC N+ D+E MAG GY T+ EEAD+ L+NTC ++ +++ +
Sbjct: 66 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEMIEEADVVLLNTCAIRENAENKVFGELGF 125
Query: 116 TLIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
L K K+ + + V GC+ Q ++ LK+ + V +V G I R+ ++ + E
Sbjct: 126 LLKYKRKNPEMLIGVCGCMSQEESVVNKILKQYQHVDMVFGTHNIHRLPNILHDAYMSKE 185
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK R + I GC CTYC + RG S E ++
Sbjct: 186 MVVEVWSKEGDVIENLPKKRIGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 245
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 246 EVRELAAQGYKEIMLLGQNVNAYGKDFD-DIEYRLGDLMDELRKIDIPRIRFTTSHPRDF 304
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL I + + + +H+PVQSGS+ +L +
Sbjct: 305 DDHL--IKVLAKGGNLVDHIHLPVQSGSNEILKI 336
>gi|148262793|ref|YP_001229499.1| MiaB-like tRNA modifying enzyme YliG [Geobacter uraniireducens Rf4]
gi|238066246|sp|A5GBX9.1|RIMO_GEOUR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
Short=S12 MTTase; Short=S12 methylthiotransferase;
AltName: Full=Ribosome maturation factor RimO
gi|146396293|gb|ABQ24926.1| SSU ribosomal protein S12P methylthiotransferase [Geobacter
uraniireducens Rf4]
Length = 448
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 141/280 (50%), Gaps = 28/280 (10%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTL 117
E + + + GC N D+E M G L+ Y +T + EADI ++NTC+ +K Q ++DT+
Sbjct: 7 EKVSLVSLGCPKNLVDAEVMLGYLAKEKYEVTTDEREADIIIVNTCSFIKEAKQESIDTI 66
Query: 118 I--------AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSI-VGVQQIDRVVEVVEETL 166
+ A+C+ L+V GC+PQ ++ +KEL V I VG R+ E++ E
Sbjct: 67 LDLADRKHDARCRL----LIVTGCLPQRYQEELVKELPEVDIFVGTGDYPRIAEIIAEK- 121
Query: 167 KGHEVRLLHRKK---LPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
+G +L + L DLP+++ + + L I GC C+YC RG S
Sbjct: 122 EGMSEQLRYTGDPNFLYDEDLPRLQSSPYYTAYLKIAEGCSNCCSYCVIPSLRGAFRSRP 181
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRI 280
++ L+ R ++A GVKE+ L ++D YG+D+ G +L L+ + A DG +R+
Sbjct: 182 LDKLLKEARELVARGVKEINLIAQDITGYGKDLAGGASLEGLIKELAA---LDGLQWIRL 238
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P I + L ++ C Y L +P+Q SD VL
Sbjct: 239 LYAYPDGISDSLIQLIRDEDKVCKY--LDIPLQHVSDPVL 276
>gi|392394104|ref|YP_006430706.1| 30S ribosomal protein S12 [Desulfitobacterium dehalogenans ATCC
51507]
gi|390525182|gb|AFM00913.1| SSU ribosomal protein S12P methylthiotransferase
[Desulfitobacterium dehalogenans ATCC 51507]
Length = 442
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 133/274 (48%), Gaps = 27/274 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA---- 119
T GC NQ DSE M G + Y + E+ADI +INTCT ++S ++DT++
Sbjct: 9 TLGCPKNQVDSEIMTGHMME-KYQVVTEPEQADIIIINTCTFIESAKAESIDTILQMSQY 67
Query: 120 KCKSAKKPLVVAGCVPQGSRD-----LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
K + K LV GC+ Q D + EL+G I+G I +++ +EE K ++
Sbjct: 68 KGEGQCKTLVATGCLAQRYGDELLAEIPELDG--IMGTGNISEILQTLEEAEKSKVKKI- 124
Query: 175 HRKKLPAL----DLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ PA +P+VR K + + GC CTYC H RGH S ES++
Sbjct: 125 -SAEAPAFIYDETMPRVRLTPKQYAYVKVAEGCDNYCTYCIIPHVRGHFRSRKQESILRE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V + ++GVKEV L ++DT YG+D+ LP L+ I +G +R+ P
Sbjct: 184 VEAMASEGVKEVLLIAQDTTRYGKDLYGEYRLPSLIKEIAK---IEGIEWIRLMYCYPEL 240
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ L I + P V +L +P+Q + VL+
Sbjct: 241 FTDEL--ITVMKETPKVCRYLDLPLQHAHNKVLA 272
>gi|119489699|ref|ZP_01622458.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
gi|119454436|gb|EAW35585.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
Length = 452
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 143/283 (50%), Gaps = 26/283 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G T + EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGLLFTADPNEADVVLYNTCTIRDNAEHKVYSYLGRQ 68
Query: 122 --KSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ K+P L++AGCV Q G L+ + + +V G Q +R+ E++E+ +G++V
Sbjct: 69 AKRKHKQPNLTLILAGCVAQQEGQTLLRRVPELDLVMGPQHANRLQELLEQVDEGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSNVTAW-VNVIYGCNERCTYCVVPNVRGIEQSRTPEAIRSEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ + P L + V ++P G LR +
Sbjct: 187 ELGRLGYKEITLLGQNIDAYGRDLPGSTPEGRHKHTLTDLLSFVHDVP--GIERLRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+P + E L K AE+ P V H+P QSG + +L +
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQILKAMSR 284
>gi|169350629|ref|ZP_02867567.1| hypothetical protein CLOSPI_01401 [Clostridium spiroforme DSM 1552]
gi|169292683|gb|EDS74816.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium spiroforme
DSM 1552]
Length = 481
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 140/273 (51%), Gaps = 16/273 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GC N+ DSE ++G L + Y TD +EADI ++NTC ++ ++ + +
Sbjct: 47 YIQTYGCQANERDSETLSGILESMSYRATDEIKEADIIILNTCAIRENAEEKVFGKVGYV 106
Query: 122 KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE- 170
K+ KK + GC+ Q +R L++ V ++ G I R+ E+++E E
Sbjct: 107 KNLKKTNPNLIFAMCGCMAQEEVVVNRILEKHPHVDLIFGTHNIHRLPELLKEAFYSKEM 166
Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + ++ + P R +K + I GC CTYC + RG S + +V
Sbjct: 167 IIEVWSKEGDVIENAPVKRDSKHKAWVNIMYGCNKFCTYCIVPYTRGKERSRLAKDIVKE 226
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
V +++ADG +E+ L ++ +YG+D+G + + ++ ++ G +R ++P
Sbjct: 227 VESLVADGYQEITLLGQNVNSYGKDLGNDYN--FSNLLEDVAKTGIPRIRFTTSHPWDFS 284
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
E + +I + ++ + +H+PVQSG++ VL +
Sbjct: 285 EDMIKI--IAKYDNIMPAIHLPVQSGNNEVLKL 315
>gi|449018850|dbj|BAM82252.1| probable 2-methylthioadenine synthetase [Cyanidioschyzon merolae
strain 10D]
Length = 560
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 21/289 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV----KSPSQSAMDTLIAK 120
GC+ N D+E G LSA G+ + +E AD ++NTCT KS S SA+ A+
Sbjct: 118 AMGCAKNTVDAEVFLGDLSAKGFQIVSENEPADAIIVNTCTFIDEAKSESISAILEAAAR 177
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETL-KGHEVRLLHR 176
KS + LVV GC+ Q D KE+ V +++G +++ E ++ + K H +
Sbjct: 178 KKSGTRALVVTGCMAQRYADELAKEIPEVDAVIGFAAYNQLAEQIQRLVRKQHRMEKQST 237
Query: 177 KKLPALDL---PKVRRNKF----VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
++ A+D+ P+ RR++ L + GC C +C RG S + LV
Sbjct: 238 VQVGAVDVPFRPEYRRHRLGASHTAYLRVAEGCDHQCAFCAIPQWRGRFRSKPFDQLVEE 297
Query: 230 VRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPI---LLNAIVAELPPDGSTMLRIGMTNP 285
++ GV+E+ L +EDT YG D G P LL EL P G +R+ P
Sbjct: 298 AHHLVERQGVRELCLIAEDTNMYGMDRGPETPRLAELLRYFQRELVPRGLVWIRLLYCYP 357
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVSL 334
+ + L IA + P V + +P+Q SDAVL ++ + + + +L
Sbjct: 358 SYFSDDL--IAAIAECPAVVRCIDIPLQHASDAVLQRMRRPLMSHTSAL 404
>gi|227824689|ref|ZP_03989521.1| RNA modification enzyme [Acidaminococcus sp. D21]
gi|352685015|ref|YP_004897000.1| RNA modification enzyme [Acidaminococcus intestini RyC-MR95]
gi|226905188|gb|EEH91106.1| RNA modification enzyme [Acidaminococcus sp. D21]
gi|350279670|gb|AEQ22860.1| RNA modification enzyme [Acidaminococcus intestini RyC-MR95]
Length = 435
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 132/287 (45%), Gaps = 35/287 (12%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+I T GC NQSD+ M GY + E +DI LINTC V + Q +I
Sbjct: 4 SISFYTLGCKVNQSDTASMEKLFREAGYEIVPFGEASDICLINTCVVTNMGQGKSRRMIR 63
Query: 120 KC-KSAKKPL-VVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLH 175
+ K KPL VV GC PQ + ++ LEGV + VG + R+VE+VEE RL
Sbjct: 64 RTIKRDPKPLIVVTGCYPQTAPEEVAALEGVDLLVGNRDRARIVELVEE-------RLGE 116
Query: 176 RKKLPA---LDLP----------KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
R P LDLP V ++ L I GC C+YC +ARGHL S
Sbjct: 117 RDAAPVNDVLDLPVGSEFEDLAASVDDSRDRAFLKIQEGCDQYCSYCIIPYARGHLRSRP 176
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
+ S+ V + +G KEV L G YG++ N L +A+ A L LR+G
Sbjct: 177 LSSIRREVEHLTEEGYKEVVLLGIHLGCYGKETA-NGERLSDAVSAALSVPALCRLRLGS 235
Query: 283 TNPPFILEHLKEIAEVLR----HPCVYSFLHVPVQSGSDAVLSVSQK 325
LE ++ E+LR P LH+P+QSG D +L +
Sbjct: 236 ------LESVEVQPELLRLMQEDPRFCCHLHLPLQSGCDKILKAMNR 276
>gi|254431186|ref|ZP_05044889.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobium sp. PCC 7001]
gi|197625639|gb|EDY38198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobium sp. PCC 7001]
Length = 476
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 131/277 (47%), Gaps = 20/277 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ ++ TFGC N++DSE MAG L A GY EAD+ L NTCT++ ++ + + +
Sbjct: 33 SYWITTFGCQMNKADSERMAGILEAMGYREAGAELEADLVLYNTCTIRDNAEQKVYSYLG 92
Query: 120 KCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K+ LVVAGCV Q G L+ + + +V G Q +R+ ++ + +G +V
Sbjct: 93 RQAQRKRANPNLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLETLLSQVEQGQQV 152
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ D+ RR+ V +NV GC CTYC RG S E++
Sbjct: 153 VATEEHHILE-DITTARRDSSV-CAWVNVIYGCNERCTYCVVPSVRGQEQSRLPEAIRLE 210
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + A G KE L ++ AYGRD+ G L + + +G +R +
Sbjct: 211 MEGLAARGFKETTLLGQNIDAYGRDLPGITPEGRRRHTLTDLLQFVHDVEGIERIRFATS 270
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+P + E L + L P V H+P QSG DAVL
Sbjct: 271 HPRYFTERLIDACAAL--PKVCEHFHIPFQSGDDAVL 305
>gi|434386620|ref|YP_007097231.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Chamaesiphon minutus PCC 6605]
gi|428017610|gb|AFY93704.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Chamaesiphon minutus PCC 6605]
Length = 450
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 137/288 (47%), Gaps = 24/288 (8%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P + ++ TFGC N++DSE M G L G+ +D+ AD+ L NTCT++ ++ +
Sbjct: 3 PIDRSYHITTFGCQMNKADSERMGGILEDMGFQWSDDPFTADLVLYNTCTIRDLAEQKVY 62
Query: 116 TLIAKCKSAKKP-----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEET 165
+ + K KK L++AGCV Q R + EL+ I+G Q +R+ +++++
Sbjct: 63 SYLGKQTRRKKDNPDLVLIMAGCVAQQEGEALLRRIPELD--LIMGPQHANRLEDLLQQV 120
Query: 166 LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTV 223
G +V + D+ K RR+ V +NV GC CTYC + RG S T
Sbjct: 121 FSGAQVVATEPIHIIE-DITKPRRDSSVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTP 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTM 277
E++ ++ + G KEV L ++ AYGRD+ G + L + + +G
Sbjct: 179 EAIRAEIKELARQGYKEVTLLGQNIDAYGRDLPGSTVEGRHSHTLTDLLYYIHDIEGIER 238
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+R ++P + E L I P V HVP QSG + +L +
Sbjct: 239 IRFATSHPRYFTERL--IKACTELPKVCEHFHVPFQSGDNDILKAMSR 284
>gi|452124739|ref|ZP_21937323.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
holmesii F627]
gi|451923969|gb|EMD74110.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
holmesii F627]
Length = 471
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 149/307 (48%), Gaps = 28/307 (9%)
Query: 40 LHDNHLSKTGS---LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEE 95
+H+ L + G+ SP + IY++TFGC N+ DS+ M L G +TDN EE
Sbjct: 1 MHETTLKREGAPAASSPAPTASGKIYIRTFGCQMNEYDSDKMVDVLREDQGLEVTDNPEE 60
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVP--QGSRDLKELEGVS 148
AD+ L NTC+V+ +Q + + + + + KK + V GCV +G +K V
Sbjct: 61 ADVILFNTCSVREKAQEKVFSDLGRVQHLKKLNPHLVIGVGGCVASQEGEAIVKRAPYVD 120
Query: 149 IV-GVQQIDRVVEVV----EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCL 203
+V G Q + R+ E++ +E + ++ +K ++P R + I GC
Sbjct: 121 VVFGPQTLHRLPELIRRRRDEGVSQVDISFPEIEKFD--NMPPARIEGATAFVSIMEGCS 178
Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRDIGVN 258
C++C + RG S E ++ V + GV+EV L ++ AY G D +
Sbjct: 179 KYCSFCVVPYTRGEEVSRPFEDVLTEVADLADQGVREVTLLGQNVNAYRGRMEGSDEIAD 238
Query: 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA 318
+LL V E+P G +R ++P + + + E R P + SFLH+PVQ+GSD
Sbjct: 239 FAMLLE-YVHEIP--GIERIRYTTSHPKEMTQRMVEA--YARLPKLVSFLHLPVQAGSDR 293
Query: 319 VLSVSQK 325
VLS ++
Sbjct: 294 VLSAMKR 300
>gi|333370927|ref|ZP_08462897.1| tRNA-I(6)A37 modification enzyme MiaB [Desmospora sp. 8437]
gi|332976877|gb|EGK13699.1| tRNA-I(6)A37 modification enzyme MiaB [Desmospora sp. 8437]
Length = 495
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 136/272 (50%), Gaps = 15/272 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+KT+GC N DSE +AG L GY T+ EEA + LINTC ++ ++ + I + K
Sbjct: 53 IKTYGCQMNVHDSETIAGILELMGYRPTEVEEEAAVILINTCAIRENAEDKVFGEIGRLK 112
Query: 123 SAK--KPLVV---AGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
+ K KP +V GC+ Q +R L++ + V ++ G I R+ ++ E L E
Sbjct: 113 TLKTEKPELVLGMCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPHLLREALMSKEMV 172
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ +LPKVR + + I GC CTYC + RG S E ++ +
Sbjct: 173 VEVWSKEGDIVENLPKVREDGLKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVLAEI 232
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + G +EV L ++ AYG+D + ++ ++ G +R ++P +
Sbjct: 233 RDLARKGYREVTLLGQNVNAYGKDFE-DRDYRFGDLMEDVRKIGIPRVRFTTSHPRDFDD 291
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
HL E+ + R + +H+P QSG++A+L +
Sbjct: 292 HLIEV--LARRGNLVEHIHLPAQSGNNAILKI 321
>gi|284929598|ref|YP_003422120.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [cyanobacterium UCYN-A]
gi|284810042|gb|ADB95739.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [cyanobacterium UCYN-A]
Length = 448
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 133/271 (49%), Gaps = 18/271 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
TFGC N++DSE MAG L G+ TD ++A++ L NTCT++ ++ + + + K +
Sbjct: 13 TFGCQMNKADSERMAGILEDMGFQWTDVLDQANLILYNTCTIRDSAEQKVYSYLGKQAKR 72
Query: 123 SAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K P L VAGCV Q G + L+ + + +V G Q ++ + +++E+ LKG+++
Sbjct: 73 KHKDPSLILAVAGCVAQQEGEKILRRIPELDLVMGPQHVNYLGDLLEQVLKGNQIVATEP 132
Query: 177 KKLPALDLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ D+ K RR +K + I GC C+YC RG S T E + ++ +
Sbjct: 133 IHIIE-DITKPRRASKITAWVNIIYGCNERCSYCVVPSVRGLEQSRTPEDICSEIKLLEQ 191
Query: 236 DGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
G KEV L ++ AYGRD+ G N + + +R ++P +
Sbjct: 192 QGYKEVTLLGQNIDAYGRDLPGTTETGRNQYTFTDLLYRIHEVSNIKRIRFATSHPRYFT 251
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E L I+ P + H+P QSG + +L
Sbjct: 252 ERL--ISACHELPNICEHFHIPFQSGDNDIL 280
>gi|348026179|ref|YP_004765984.1| MiaB-like tRNA modifying enzyme YliG [Megasphaera elsdenii DSM
20460]
gi|341822233|emb|CCC73157.1| MiaB-like tRNA modifying enzyme YliG [Megasphaera elsdenii DSM
20460]
Length = 444
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 142/275 (51%), Gaps = 17/275 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTL 117
E I + GCS N D+E M G L +T++ +ADI ++NTCT ++ Q ++DT+
Sbjct: 2 EKIGFVSLGCSKNLIDTEVMLGILRDRHMEITEDLSQADIIIVNTCTFIEKAKQESIDTI 61
Query: 118 IA----KCKSAKKPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHE 170
+ K + K L+V GC+ Q + +KE+ E +++G DR+ E ++ KG +
Sbjct: 62 LQAARYKTEGKCKILIVTGCLSQQYKQDLMKEMPEIDALLGTGSWDRIWEAIDTVKKGRK 121
Query: 171 VRLLHR-KKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ L + ++R K+ + I GC C++C H RG L S V+S+V
Sbjct: 122 ACYMDDVSHLYNQNTSRLRTTPKYSAYVKIGEGCNNGCSFCIIPHVRGKLYSRPVDSVVA 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPP 286
V+ + ADGVKE+ L ++DT +YG D+ + LP LL +V DG +R+ P
Sbjct: 182 EVQQLAADGVKEINLIAQDTTSYGVDLAGHSLLPELLRQLV---KIDGIRWIRLFYLYPH 238
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ + L ++ +++ + ++ +P+Q S VL
Sbjct: 239 YFTDELMDL--IVKEEKICPYVDLPLQHISQTVLQ 271
>gi|257784577|ref|YP_003179794.1| MiaB family RNA modification protein [Atopobium parvulum DSM 20469]
gi|257473084|gb|ACV51203.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469]
Length = 455
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 21/277 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T ++KTFGC N D+E ++G L A G ++++ADI + TC+V+ + +
Sbjct: 10 KTYHIKTFGCQMNLHDTERVSGLLEACGCNEVSDTDDADIVIFMTCSVRENADQRLYGQA 69
Query: 119 AKCKSAKKP------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ SA P + + GC+ Q G + +++ V +V G + + ++ +G
Sbjct: 70 SAMVSAPTPPSGKRIVAIGGCIAQRDGEKLREKVPAVDVVFGTSALASLPALLTSAFRGE 129
Query: 170 EVRLL----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
R+ K + DLP R ++ +PI GC CTYC + RG S T E+
Sbjct: 130 NDRVAVDISEEGKGFSTDLPSNRAQQYHAWVPIMTGCNNFCTYCIVPYVRGRERSRTFEA 189
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
++G ++ADGV+E+ L ++ +YGRD+ LL A+ G +R +
Sbjct: 190 VIGECERLVADGVREITLLGQNVNSYGRDLYGKPRFAELLRAV----GQTGVERIRFTSS 245
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
NP + + + IA + P V LH+ VQSGS VL
Sbjct: 246 NPKDLTD--ETIAAMKETPAVMPHLHLAVQSGSTRVL 280
>gi|428774566|ref|YP_007166354.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium stanieri
PCC 7202]
gi|428688845|gb|AFZ48705.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium stanieri
PCC 7202]
Length = 451
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 134/278 (48%), Gaps = 18/278 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+ TFGC N++DSE MAG L GY T++ EA I + NTC+++ ++ + + + K
Sbjct: 10 ITTFGCQMNKADSERMAGILETMGYDFTEDPNEASIIVYNTCSIRDNAEQKVYSYLGKQA 69
Query: 123 SAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL 174
K LVVAGCV Q G + L+ + + I+G Q +R+ ++++ G+++
Sbjct: 70 KRKHKEGDLTLVVAGCVAQQEGEQLLRRVPEIDLIMGPQHANRLDSLLDQVFAGNQIVAT 129
Query: 175 HRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ D+ K RR V + I GC C+YC + RG S T E++ + +
Sbjct: 130 EPVHIFE-DITKPRRESSVSAWVNIIYGCNERCSYCVVPNTRGVEQSRTPEAIKAEIEEL 188
Query: 234 IADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
G KE+ L ++ AYGRD+ G + L + + +G +R ++P +
Sbjct: 189 ARQGYKEITLLGQNIDAYGRDLPGTTETGRHKHTLTDLLYFIHDVEGIERIRFATSHPRY 248
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
E L + L P V H+P QSG + VL ++
Sbjct: 249 FTERLIKACHEL--PKVCEHFHIPFQSGDNEVLKAMKR 284
>gi|260892471|ref|YP_003238568.1| MiaB family RNA modification protein [Ammonifex degensii KC4]
gi|260864612|gb|ACX51718.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4]
Length = 447
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 130/270 (48%), Gaps = 15/270 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ T+GC N+ DSE MAG + GY + EEAD+ L+NTC V+ +++ + L+
Sbjct: 11 YIFTYGCQMNEWDSEVMAGLVEEMGYTRAGSPEEADLILLNTCCVRESAENKVWGLLGSL 70
Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEV 171
K+ L V GC+PQ E++ IVG + ++ E +G V
Sbjct: 71 GRLKQRRPWLLLGVTGCLPQRPGAAAEIKRRFPFVDLIVGTYNRHELPRLILEAERGQVV 130
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ ++ LP R ++ +PI GC CTYC + RG S E ++ V+
Sbjct: 131 AVSPEEQEIVEGLPIRRESRLRAWVPIMFGCNNFCTYCIVPYVRGKERSRRPEDILREVK 190
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILE 290
+ +G +E++L ++ AYG+ G+ P+ ++ +L +G +R ++P E
Sbjct: 191 ELAKEGYREIFLLGQNVNAYGK--GLQPPVTFADLLRQLNAVEGIWRIRYTTSHPRDFGE 248
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L I V P V H+PVQ+GSD +L
Sbjct: 249 DL--IRAVAELPKVCENFHLPVQAGSDKIL 276
>gi|319937480|ref|ZP_08011885.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
gi|319807320|gb|EFW03929.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
Length = 438
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 133/274 (48%), Gaps = 19/274 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC N +SE M GY D ++AD+++INTCTV + S +I
Sbjct: 4 KTVAFLTLGCKVNTYESEAMLKLFHQAGYEAVDFKDKADVYVINTCTVTNTGDSKSRQMI 63
Query: 119 AKC--KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEE-------TLK 167
K ++ K + V GC Q S ++ +EGV +V G Q +++V+ V E +K
Sbjct: 64 RKAIRQNEKAIVCVVGCYSQVASEEVVSIEGVGVVLGTQFRNQIVDFVNEYKTTQKPVIK 123
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+V L R LD+ + RN L I GC CTYC +ARG + S T ES++
Sbjct: 124 VADVMKLSR--FEDLDIDEFTRNTRA-FLKIQDGCNNFCTYCIIPYARGQIRSRTPESVL 180
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ ++++ G E+ L+ T YG+D + LL + ++ G LRI
Sbjct: 181 KQAQSLVDHGFVEIVLTGIHTAGYGQDFENYSFYDLLVDLTTKIK--GLKRLRISSIEMS 238
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
I + + ++ + P + LH+P+QSG DA L
Sbjct: 239 QITQEIIDL--IAMSPIIVDHLHIPIQSGCDATL 270
>gi|363894589|ref|ZP_09321669.1| MiaB-like tRNA modifying enzyme YliG [Eubacteriaceae bacterium
ACC19a]
gi|361961988|gb|EHL15139.1| MiaB-like tRNA modifying enzyme YliG [Eubacteriaceae bacterium
ACC19a]
Length = 438
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 141/290 (48%), Gaps = 41/290 (14%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTL 117
E +++ GCS N D+E M L+ GY +T + EA I ++NTC ++S + ++DT+
Sbjct: 3 EKFILESLGCSKNLVDAEEMVYILNKNGYEMTGDINEATIAIVNTCGFIESAKEESIDTI 62
Query: 118 --IAKCKSAK-KPLVVAGCVPQGSRDLKEL-----EGVSIVGVQQIDRVVEVVEETLKGH 169
IA+ K K L+V GC+ Q R KEL E + +G D + V+ KG
Sbjct: 63 FEIARYKQKNLKYLIVTGCLAQ--RYYKELKDKIPEVDAFLGTTSYDTIYNVI----KGL 116
Query: 170 EV------------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
E+ +L H KK K+ + + + I GC +CTYC RG
Sbjct: 117 EIGQDNSLILNADRKLEHTKK-------KILTDNYYAYVKIAEGCDNSCTYCIIPRLRGR 169
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGS 275
S +E ++ V+ + + GVKE+ L ++DT YG DI LP LL + +E+ DG
Sbjct: 170 YKSRGMEEIITEVQDLASQGVKEIILIAQDTSKYGLDIYKEKKLPELLRKL-SEI--DGI 226
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+R T P I E L + EV + V S+ +P+Q +D +L + +
Sbjct: 227 KWIRFLYTYPEDITEEL--VQEVKNNDKVCSYFDIPIQHANDRILKLMNR 274
>gi|251780327|ref|ZP_04823247.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243084642|gb|EES50532.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 434
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 135/266 (50%), Gaps = 15/266 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M + GY++TD + AD+++INTCTV + +I+K +
Sbjct: 7 TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKARRT 66
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLH 175
++A GC Q ++ ++EGV +V G + +V V E+ ++ +L
Sbjct: 67 NSNAIIAVVGCYSQIAPEEVSKIEGVDVVLGTRNKGDIVYFVNKARDEKAIQVSVNEVLK 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + ++K L I GC CT+C +ARG S E ++ V+ +
Sbjct: 127 NKEFEELNIEEY-QDKTRAFLKIQDGCNRFCTFCLIPYARGATCSKKPEKVIEEVKKLAE 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KEV LS T +YG D+G ++ ++ +++ ++ DG +RIG P F + +
Sbjct: 186 HGFKEVILSGIHTASYGVDLGTDVTLI--SLLEDIEKIDGIDRVRIGSIEPAFFTDEVIN 243
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ ++ C + H+ +QSGSDA L
Sbjct: 244 KIKNMKKLCPH--FHLSLQSGSDATL 267
>gi|170078520|ref|YP_001735158.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. PCC 7002]
gi|229891029|sp|B1XQK7.1|MIAB_SYNP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|169886189|gb|ACA99902.1| tRNA-i(6)A37 thiotransferase enzyme [Synechococcus sp. PCC 7002]
Length = 451
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 141/284 (49%), Gaps = 28/284 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY T++ AD+ L NTCT++ ++ + + + +
Sbjct: 8 HITTFGCQMNKADSERMAGILEEMGYHFTEDPYAADLVLYNTCTIRDNAEQKVYSYLGRQ 67
Query: 122 --KSAKKP---LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
+ +KP L+VAGCV Q R + EL+ I+G Q +R+ +++E+ G +V
Sbjct: 68 AKRKQEKPDLTLIVAGCVAQQEGESLLRRVPELD--LIMGPQHANRLQDLLEQVEGGSQV 125
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ D+ K RR+ V +NV GC CTYC RG S E++
Sbjct: 126 VATEPIHI-VEDITKPRRDSTVTAW-VNVIYGCNEHCTYCVVPGVRGTEQSRYPEAIRAE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIG 281
+ + G KEV L ++ AYGRD+ G N L + + V ++P G +R
Sbjct: 184 MEELGRQGFKEVTLLGQNIDAYGRDLPGTTPEGRNKYTLTDLLYYVHDVP--GIERIRFA 241
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
++P + E L + + L P V H+P QSG + VL ++
Sbjct: 242 TSHPRYFTERLIKACQEL--PKVCEHFHIPFQSGDNEVLKAMRR 283
>gi|134299740|ref|YP_001113236.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Desulfotomaculum reducens MI-1]
gi|229890514|sp|A4J5Q8.1|MIAB_DESRM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|134052440|gb|ABO50411.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum reducens
MI-1]
Length = 456
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 131/275 (47%), Gaps = 15/275 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+++FGC N+ D+E +AG L GY T EEADI L+NTC V+ ++S + L+ + +
Sbjct: 21 IQSFGCQMNERDAESLAGMLEDLGYCPTSAQEEADIILLNTCCVRETAESKVFGLLGRLR 80
Query: 123 SAK--KP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE-- 170
K KP L V GC+ Q K + I G I + ++ + + HE
Sbjct: 81 KLKVAKPDLILGVCGCMSQQEDAAKRIRRSFPFVDLIFGTHNIHELPRMIHQVQENHEAV 140
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + +K +P R++K + I GC CTYC + RG S E ++ +
Sbjct: 141 LEVWATEKGITESIPVKRKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERSRQPEDIIDEI 200
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ ++ +G KEV L ++ +YG+D N + ++A G +R ++P +
Sbjct: 201 KELVQEGYKEVTLLGQNVNSYGKDFKNNYR-FADLLMAIDDITGLERVRFMTSHPRDFDQ 259
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L E+ + C + H+P Q+GS+ VL + +
Sbjct: 260 RLIEVVASAKKVCEH--YHLPAQAGSNRVLKMMNR 292
>gi|289578123|ref|YP_003476750.1| MiaB-like tRNA modifying protein [Thermoanaerobacter italicus Ab9]
gi|289527836|gb|ADD02188.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter italicus Ab9]
Length = 449
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 134/268 (50%), Gaps = 18/268 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV--KSPSQSAMDTLIAKCK 122
T GC NQ ++E MA GY + D E+AD+++INTCTV +S +S + A+ K
Sbjct: 21 TLGCKVNQYETEVMAELFKKAGYEVVDFDEKADVYVINTCTVTNRSDMKSRQEIRKARKK 80
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEE-TLKGHEV----RLLH 175
+ +V GC Q S +D+ L V I +G + D++VE+VEE T K ++ ++
Sbjct: 81 NPNAVVVAVGCYVQVSPKDVFSLPEVDIAIGTKNKDKIVELVEEFTQKNQKLSVVNNIMT 140
Query: 176 RKKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+K+ ++ R +V+I GC CTYC +ARG + S E ++ VR
Sbjct: 141 QKEYEEFEVTAYTERTRAYVKIQD---GCNQYCTYCIIPYARGPVRSREPEKILEEVRRF 197
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
G KE+ L+ +YG+D+ N+ LL+ I DG +R+ P F+ E
Sbjct: 198 ADSGYKEIVLTGIHIASYGKDLK-NIG-LLDIIKRIHEIDGIKRIRLSSIEPVFLTEEF- 254
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ E+ + P + HV +QSG D L
Sbjct: 255 -VKEIAKLPKMCRHYHVSLQSGCDETLK 281
>gi|383786187|ref|YP_005470756.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Fervidobacterium pennivorans DSM 9078]
gi|383109034|gb|AFG34637.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Fervidobacterium pennivorans DSM 9078]
Length = 430
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 136/266 (51%), Gaps = 13/266 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ T+GC N++D+E L G+ + D+ +EADI ++NTC V+ S+ + + I K
Sbjct: 3 VHIYTYGCQMNENDTEIAKQLLLDGGFEVVDSEDEADIVILNTCAVRKKSEDKVYSHIGK 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ K + + GCV ++ GVS ++G + I +V E V G + ++ L
Sbjct: 63 LRKKGKRIGIMGCVADKEKENLFKRGVSFVIGTRAIAKVPEAVLNAKNGAK-QIYLDDTL 121
Query: 180 PALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+D KV R +K + I GC CTYC + RG S +ES++ VRT++ G
Sbjct: 122 DEIDYHKVETRSSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRPMESVLLEVRTLVEKG 181
Query: 238 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKE 294
KE ++ AYG+D+ G +L LL A++ DG L + P F LE +
Sbjct: 182 YKEFTFLGQNVDAYGKDLNDGTSLAKLLRE-TAQI--DGVKRLWFLTSYPTDFSLEIPQA 238
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ E +P + +H+PVQ GSD +L
Sbjct: 239 MVE---NPKIAKSIHLPVQHGSDKIL 261
>gi|154148690|ref|YP_001406630.1| hypothetical protein CHAB381_1072 [Campylobacter hominis ATCC
BAA-381]
gi|153804699|gb|ABS51706.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
Length = 414
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 129/267 (48%), Gaps = 11/267 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KTFGC N DSE + Q++ FG + + AD +IN+CTV + + S + I +
Sbjct: 3 IYIKTFGCRTNIYDSELIMAQIARFGGEICKDENLADFVIINSCTVTNGADSDVRNFIYR 62
Query: 121 CKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
A K +++ GC + +G + E + G+ +R+ E + + + E+ L+ K+
Sbjct: 63 MNRAGKKVIITGCAALNKGKEFFERGEIFGVFGMSNKNRIAEFLNKGERFCELGNLNFKE 122
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L+ K F++I GC C+YC RG S ++ V+ +IA
Sbjct: 123 NALLNDFKSHTKAFIKIQE---GCDFNCSYCIIPSVRGKSRSVDENLIIEEVKKIIAGNH 179
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ L+ + G+YG+D G +L LL + G +R+G P I E +EI
Sbjct: 180 TEIVLTGTNIGSYGKDNGSSLGELLQKLG---KISGLKRIRLGSIEPSQIDEKFREI--- 233
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L P + LH+ +Q S +L++ ++
Sbjct: 234 LDEPWLEKHLHIALQHTSQKMLTIMRR 260
>gi|21231765|ref|NP_637682.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66768109|ref|YP_242871.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
campestris pv. campestris str. 8004]
gi|188991239|ref|YP_001903249.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
campestris pv. campestris str. B100]
gi|81305914|sp|Q4UVS2.1|MIAB_XANC8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81793688|sp|Q8P8B5.1|MIAB_XANCP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891032|sp|B0RRW2.1|MIAB_XANCB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|21113472|gb|AAM41606.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573441|gb|AAY48851.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|167732999|emb|CAP51197.1| unnamed protein product [Xanthomonas campestris pv. campestris]
Length = 485
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 150/293 (51%), Gaps = 41/293 (13%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KT GC N+ DS MA L+A G LTDN E+AD+ L+NTC+++ +Q + + +
Sbjct: 39 LYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEKVFSQLG 98
Query: 120 KCKSAK---KPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVV---EETLKG 168
+ K+ K KP++ V GCV +G +K V +V G Q + R+ E++ E+ K
Sbjct: 99 RWKALKAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGKS 158
Query: 169 H------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
E+ R P D P + FV I+ GC C++C + RG S
Sbjct: 159 QVDISFPEIEKFDRLPEPRADGP----SAFVSIME---GCSKYCSFCVVPYTRGEEVSRP 211
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDT----GAYGRDIG-----VNLPILLNAIVAELPPD 273
E ++ V + A GV+E+ L ++ GAYG D G +L +L+ I A++ D
Sbjct: 212 FEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGEPAQYADLGLLIRTI-AQI--D 268
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
G +R ++P LE + + R P + ++LH+PVQ+GSD +LS ++
Sbjct: 269 GIGRIRFTTSHP---LEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKR 318
>gi|329296076|ref|ZP_08253412.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Plautia stali symbiont]
Length = 474
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 149/286 (52%), Gaps = 26/286 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEEAEDADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCK--SAKKP---LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ + K AK P + V GCV +G + + + V IV G Q + R+ E++ + ++G
Sbjct: 62 LLGRWKKLKAKNPELIIGVGGCVASQEGDKIRQRAQCVDIVFGPQTLHRLPEMINQ-VRG 120
Query: 169 HEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ ++ P ++ LP+ R + I GC CT+C + RG S +
Sbjct: 121 SKSTIVD-VSFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPCD 179
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYG----RDIGVNLPILLNAIVAELPPDGSTMLRI 280
++ V + A GV+EV L ++ AY D LL + A DG +R
Sbjct: 180 DILLEVAQLAAQGVREVNLLGQNVNAYRGATFDDQICTFAELLRLVAA---IDGIDRIRF 236
Query: 281 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
++P +E +I +V R P + SFLH+PVQSG+D +L++ ++
Sbjct: 237 TTSHP---IEFTDDIIDVYRDMPELVSFLHLPVQSGADRILTLMKR 279
>gi|240139952|ref|YP_002964429.1| tRNA modification enzyme MiaB, isopentenyl-adenosine A37 tRNA
methylthiolase [Methylobacterium extorquens AM1]
gi|418061495|ref|ZP_12699351.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Methylobacterium extorquens DSM 13060]
gi|240009926|gb|ACS41152.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
tRNA methylthiolase [Methylobacterium extorquens AM1]
gi|373564962|gb|EHP91035.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Methylobacterium extorquens DSM 13060]
Length = 446
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 133/276 (48%), Gaps = 23/276 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NTC ++ + + + + +
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
+ K +VVAGCV Q G L V +VG Q R+ +++ ++
Sbjct: 65 RVLKGERAESGHDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 181 VVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLRYTTSH 240
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P + L IA +P V +LH+PVQSGSD +L
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDGIL 274
>gi|421481719|ref|ZP_15929302.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Achromobacter
piechaudii HLE]
gi|400200034|gb|EJO32987.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Achromobacter
piechaudii HLE]
Length = 482
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 146/295 (49%), Gaps = 26/295 (8%)
Query: 43 NHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLI 101
+ L TG+ SP+ +Y++TFGC N+ DS+ MA L G LTDN EEAD+ L
Sbjct: 23 DALENTGAGSPR-----KLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEEADVILF 77
Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQ 153
NTC+V+ +Q + + + + + KK + V GCV +G+ +K V +V G Q
Sbjct: 78 NTCSVREKAQEKVFSDLGRVQHLKKTNPNLVIGVGGCVASQEGAAIVKRAPYVDVVFGPQ 137
Query: 154 QIDRVVEVV-EETLKGHEVRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKT 211
+ R+ +++ +G + ++ D +P R + + I GC C++C
Sbjct: 138 TLHRLPDLIARRRAEGRSQVDISFPEIEKFDNMPPPRVDGATAFVSIMEGCSKYCSFCVV 197
Query: 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRDIGVNLPILLNAI 266
+ RG S E ++ V + GVKEV L ++ AY G D + +LL
Sbjct: 198 PYTRGEEVSRPFEDVLVEVADLADQGVKEVTLLGQNVNAYRGKMEGTDDIADFAMLLE-Y 256
Query: 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
V E+P G +R ++P + + + + R P + SFLH+PVQ+GSD VL+
Sbjct: 257 VHEIP--GIERIRYTTSHPKEMTQRM--VDAYARLPKLVSFLHLPVQAGSDRVLA 307
>gi|383753488|ref|YP_005432391.1| putative MiaB-like tRNA modifying enzyme family protein
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365540|dbj|BAL82368.1| putative MiaB-like tRNA modifying enzyme family protein
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 432
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 133/276 (48%), Gaps = 27/276 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ + T GC NQ ++E M G GY + E+AD ++INTC+V S +I +
Sbjct: 4 VALTTLGCKVNQFETETMEGLFKKSGYDIVPFEEKADFYVINTCSVTSLGDRKSRQIIRR 63
Query: 121 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK--------G 168
+ + ++A GC Q ++K +EGV +V G ++ R+VE VE+ + G
Sbjct: 64 AQRTNENAIIAVCGCYSQVHPEEIKAIEGVRVVLGTKERSRIVEYVEQAAREDGILDEVG 123
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + + +P D+P+ R L I GC C+YC +ARG + S ++ +
Sbjct: 124 NIMEAHEFEDIPIYDMPQRTRA----FLKIEDGCQNFCSYCIIPYARGPVKSRHLDKIHS 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN---- 284
+ ++ G KE+ L+ GAYG+D+ + L +A L +G LR+G
Sbjct: 180 EAKKLVDAGFKEIVLTGIHLGAYGKDLDGEV-TLADACREVLKVEGLKRLRLGSLESIEL 238
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P + ++E H LH+P+Q+GSDAVL
Sbjct: 239 SPDLFALIREDDRFCAH------LHLPLQAGSDAVL 268
>gi|384428234|ref|YP_005637593.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas campestris
pv. raphani 756C]
gi|341937336|gb|AEL07475.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas campestris
pv. raphani 756C]
Length = 485
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 150/293 (51%), Gaps = 41/293 (13%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KT GC N+ DS MA L+A G LTDN E+AD+ L+NTC+++ +Q + + +
Sbjct: 39 LYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEKVFSQLG 98
Query: 120 KCKSAK---KPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVV---EETLKG 168
+ K+ K KP++ V GCV +G +K V +V G Q + R+ E++ E+ K
Sbjct: 99 RWKALKAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGKS 158
Query: 169 H------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
E+ R P D P + FV I+ GC C++C + RG S
Sbjct: 159 QVDISFPEIEKFDRLPEPRADGP----SAFVSIME---GCSKYCSFCVVPYTRGEEVSRP 211
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDT----GAYGRDIG-----VNLPILLNAIVAELPPD 273
E ++ V + A GV+E+ L ++ GAYG D G +L +L+ I A++ D
Sbjct: 212 FEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGEPAQYADLGLLIRTI-AQI--D 268
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
G +R ++P LE + + R P + ++LH+PVQ+GSD +LS ++
Sbjct: 269 GIGRIRFTTSHP---LEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKR 318
>gi|338813200|ref|ZP_08625334.1| MiaB-like tRNA modifying enzyme [Acetonema longum DSM 6540]
gi|337274807|gb|EGO63310.1| MiaB-like tRNA modifying enzyme [Acetonema longum DSM 6540]
Length = 430
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 35/281 (12%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC NQ ++E + G + GY L + AD+++INTC+V + LI
Sbjct: 3 TVAFATLGCKVNQFETETLEGLFVSRGYELVAFQDYADVYVINTCSVTHIGEKKSRQLIR 62
Query: 120 KCKSAKKP---LVVAGCVPQ---GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG---- 168
+ S + P +VV GC Q G+ + + GV +V G Q ++V++VEE +K
Sbjct: 63 RA-SKQNPAAAVVVTGCYAQIEPGT--IAGIPGVDVVVGTQDRQKIVDIVEEHVKTSLPI 119
Query: 169 HEVRLL----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ VR + H + +P +++N+ L I GC CTYC + RG L S ++E
Sbjct: 120 NAVRSIMEADHFEDIPL----HIKQNRTRAFLKIQEGCRNYCTYCIIPYTRGPLRSRSLE 175
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-- 282
S++ R ++A G +E+ L+ GAYG+ + N+ L + + + L +G LR+G
Sbjct: 176 SILAECRKLVAAGFQEIVLTGIHLGAYGKGLEENVS-LTDVVRSILGVEGLARLRLGSLE 234
Query: 283 ---TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ P I L++ + RH LH+P+QSGSD +L
Sbjct: 235 SLEADQPLIDLMLQD-ERLCRH------LHLPLQSGSDEIL 268
>gi|182678041|ref|YP_001832187.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Beijerinckia
indica subsp. indica ATCC 9039]
gi|229890430|sp|B2IIK5.1|MIAB_BEII9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|182633924|gb|ACB94698.1| RNA modification enzyme, MiaB family [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 510
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 148/314 (47%), Gaps = 42/314 (13%)
Query: 42 DNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
D LS+ + T +++K++GC N D+E MA L+ GYA T E+AD+ ++
Sbjct: 17 DGLLSQERGTQDPLVNTRKLFVKSYGCQMNVYDAERMADLLAPEGYAETSAPEDADLVIL 76
Query: 102 NTCTVKSPSQS-------AMDTLIAKCKSAKKP--LVVAGCVPQ--GSRDLKELEGVS-I 149
NTC ++ + + L A+ ++A +P +VVAGCV Q G L+ + V +
Sbjct: 77 NTCHIREHAAEKVFSELGKLRLLKAEQQAAGRPVKIVVAGCVAQAEGEEILRRQKAVDLV 136
Query: 150 VGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLP--------------KVRRNKFVEI 195
VG Q R+ +++ R+ H L + P K+
Sbjct: 137 VGPQSYHRLPDLLR--------RVAHTPGLVDTEFPAEDKFDHLVAPQPEKIAERGVGAF 188
Query: 196 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRD 254
+ + GC C++C + RG S VE+++ V T+IA GV+EV L ++ AY G D
Sbjct: 189 VTVQEGCDKFCSFCVVPYTRGAETSRPVEAILAEVETLIASGVREVTLIGQNVNAYHGFD 248
Query: 255 IGVNLPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVP 311
P L ++ VA +P G +R ++P + E L IA P + FLH+P
Sbjct: 249 AMTGAPASLASLMARVAAMP--GLLRIRYTTSHPNDMGEDL--IAAHRDIPALMPFLHLP 304
Query: 312 VQSGSDAVLSVSQK 325
VQSGSD +L+ +
Sbjct: 305 VQSGSDKILAAMNR 318
>gi|157962954|ref|YP_001502988.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
pealeana ATCC 700345]
gi|229890653|sp|A8H7B6.1|MIAB_SHEPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157847954|gb|ABV88453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella pealeana ATCC
700345]
Length = 475
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 144/283 (50%), Gaps = 28/283 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KT+GC N+ DS MA L + GY LTDN+EEAD+ L+NTC+++ +Q +
Sbjct: 2 SKKLHIKTWGCQMNEYDSSKMADLLDEYEGYTLTDNAEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKS--AKKP---LVVAGCVP-QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKG 168
+ + K+ KKP + V GCV Q + +KE I G Q + R+ E++++ G
Sbjct: 62 QLGRWKTLKDKKPGLIIGVGGCVASQEGKAIKERAQCVDLIFGPQTLHRLPEMIDQIKDG 121
Query: 169 H----EVRLLHRKKLPALDLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+V +K L P+ + FV I+ GC C++C + RG S +
Sbjct: 122 KKAVIDVSFPEVEKFDRLPEPRAEGPSAFVSIME---GCSKYCSFCVVPYTRGEEVSRPL 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYG----RDIGVNLPILLNAIVAELPPDGSTMLR 279
+ ++ + + GV+EV L ++ AY D LL + A DG LR
Sbjct: 179 DDVILEIAQLAEQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAA---IDGIDRLR 235
Query: 280 IGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLS 321
++P +E ++I +V P + SFLH+PVQSGSD +L+
Sbjct: 236 FTTSHP---IEFTQDIIDVYEDTPELVSFLHLPVQSGSDLILT 275
>gi|206890169|ref|YP_002248877.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|229891018|sp|B5YKW2.1|MIAB_THEYD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|206742107|gb|ACI21164.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 431
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 136/273 (49%), Gaps = 15/273 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+KTFGC N+ DSE M G L G+ D ++ADI + NTC ++ ++ + + +
Sbjct: 6 VYIKTFGCQMNEHDSERMLGILGTKGFIEVDEPKKADIVIFNTCAIRHKAEQKFFSSLGR 65
Query: 121 CKSAKK-----PLVVAGCVP--QGSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVR 172
K KK ++VAGC QG + L +L + I+G + V+E + E H +
Sbjct: 66 VKHLKKKNPQLKIIVAGCSAQLQGEKLLNKLPYIDYIIGPDNL-HVIENIIENQVSHRIF 124
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ ++LP R++ + I GC CTYC + RG S V+ ++ +
Sbjct: 125 TDENPEVANINLPVKRKDCVKAWVNIIYGCNNYCTYCVVPYTRGKERSRPVDDIIKEISL 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ G KEV L ++ +Y +D N P+LL + +G +R ++P + + L
Sbjct: 185 LAEQGYKEVTLLGQNVNSY-KDGNTNFPLLLEKVE---KIEGIKRIRFITSHPKDLSKEL 240
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
++ + + C + +H+P+Q+GS+ +L + +
Sbjct: 241 VDVMKDYKKICEH--IHLPLQAGSNKILKLMNR 271
>gi|327398199|ref|YP_004339068.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Hippea
maritima DSM 10411]
gi|327180828|gb|AEA33009.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Hippea
maritima DSM 10411]
Length = 421
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 135/270 (50%), Gaps = 15/270 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
Y+KTFGC N+ DSE + G L+ G+ +TD+ + A++ ++N+C V+ +++ + + I
Sbjct: 2 NFYIKTFGCQMNERDSEKVIGILTQNGWKMTDDIKSANLVIVNSCAVREKAENKIYSEIG 61
Query: 120 KCKSAKK--PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ + K +V GCV Q + + +VG ID ++ + KG ++ R
Sbjct: 62 RLRFKNKNATVVAMGCVAQINYEKLSRVADIVVGTNTIDEFYKIAKTPQKGAFIK--ERM 119
Query: 178 KLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
P P V + FV+I+ GC CTYC + RG S E+++ ++ +
Sbjct: 120 DNPDYIFPHVEGVSAFVDIM---YGCNNFCTYCIVPYTRGREISRKKEAIIEEIKRLTDK 176
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KEV L ++ +YG+ + N LL + DG +R ++P + KE+
Sbjct: 177 GTKEVMLLGQNVNSYGKGLEYNFVDLLYEVN---KIDGLKRIRFTTSHPK---DFSKELI 230
Query: 297 EVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+ +R V +H+P+QSGS+ +L + ++
Sbjct: 231 DAMRDLDKVCEHIHLPLQSGSNKILKLMRR 260
>gi|125973459|ref|YP_001037369.1| MiaB-like tRNA modifying protein YliG [Clostridium thermocellum
ATCC 27405]
gi|256005355|ref|ZP_05430320.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum DSM
2360]
gi|281417660|ref|ZP_06248680.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum
JW20]
gi|385778624|ref|YP_005687789.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum DSM
1313]
gi|419721758|ref|ZP_14248914.1| Ribosomal protein S12 methylthiotransferase rimO [Clostridium
thermocellum AD2]
gi|419724629|ref|ZP_14251690.1| Ribosomal protein S12 methylthiotransferase rimO [Clostridium
thermocellum YS]
gi|238065327|sp|A3DDZ7.1|RIMO_CLOTH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
Short=S12 MTTase; Short=S12 methylthiotransferase;
AltName: Full=Ribosome maturation factor RimO
gi|125713684|gb|ABN52176.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum ATCC
27405]
gi|255990674|gb|EEU00791.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum DSM
2360]
gi|281409062|gb|EFB39320.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum
JW20]
gi|316940304|gb|ADU74338.1| MiaB-like tRNA modifying enzyme YliG [Clostridium thermocellum DSM
1313]
gi|380771980|gb|EIC05839.1| Ribosomal protein S12 methylthiotransferase rimO [Clostridium
thermocellum YS]
gi|380782212|gb|EIC11854.1| Ribosomal protein S12 methylthiotransferase rimO [Clostridium
thermocellum AD2]
Length = 453
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 135/275 (49%), Gaps = 21/275 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLIAKCKS 123
+ GC N DSE M G L + +T +SEEA++ ++NTC ++S + +++T++
Sbjct: 9 SLGCPKNLVDSEIMLGLLKKNDFEITSDSEEANVIIVNTCGFIESAKEESINTILEMANY 68
Query: 124 AKKP---LVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVR----- 172
K L+VAGC+ Q +D +KE+ V ++VGV D + +V+EE +
Sbjct: 69 KNKNCEMLIVAGCLAQRYKDEIIKEMPEVDAVVGVSGYDEIAKVIEEFYSKKNDKNDKEK 128
Query: 173 -LLHRKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ H+ L L R N L I+ GC CTYC + RG S +E ++
Sbjct: 129 AVFHKDTLSVEYLNNERLLSTNSGYAYLKISEGCDNRCTYCAIPYIRGPYRSRKMEDIIS 188
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 287
+ GVKEV L ++D YG+D+ ++ +V E+ +G +R+ T P
Sbjct: 189 EAEFLAGKGVKEVILVAQDVTVYGKDLYGQKKLV--ELVREVSGIEGIEWIRLLYTYPEE 246
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
I E L I E+ + V +L +P+Q SD +L +
Sbjct: 247 IDEEL--IKEIANNEKVVKYLDIPIQHASDKILKL 279
>gi|373451917|ref|ZP_09543835.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium sp. 3_1_31]
gi|371967349|gb|EHO84820.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium sp. 3_1_31]
Length = 479
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 137/274 (50%), Gaps = 18/274 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GC N+ DSE +AG L + ++ E+AD+ L+NTC ++ ++ + I
Sbjct: 46 YLRTYGCQANERDSETLAGILEELMFTPVEHPEQADLILLNTCAIRKNAEDKVLGEIGSL 105
Query: 122 KSAKKP-----LVVAGCVPQGSRD-----LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K+ + GC+ Q D L++ V+++ G + R+ E++ E + GH+
Sbjct: 106 KRLKRSNPDLIFGLCGCMAQ-EEDVVQVLLEKYRHVNLIFGTHNLHRLPELLYEVMVGHK 164
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V +L ++ +LP R K + I GC CTYC + RG S +E ++
Sbjct: 165 RSVEVLSKEGDVIENLPVRRFGKHKAWVNIMYGCDKFCTYCIVPYTRGKERSRAMEDVLQ 224
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + DG KE+ L ++ +YG+D+ + ++ E G +R ++P
Sbjct: 225 EIRQLKQDGYKEITLLGQNVNSYGKDLHIEGG--FAKLLEETAKIGIERIRFTTSHPWDF 282
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + ++ + R+ + F+H+PVQSG D +L +
Sbjct: 283 SDEMIDV--IARYDNIMPFIHLPVQSGDDEILKI 314
>gi|452128135|ref|ZP_21940714.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
holmesii H558]
gi|451926350|gb|EMD76486.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
holmesii H558]
Length = 471
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 149/307 (48%), Gaps = 28/307 (9%)
Query: 40 LHDNHLSKTGS---LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEE 95
+H+ L + G+ SP + IY++TFGC N+ DS+ M L G +TDN EE
Sbjct: 1 MHETTLKREGAPAASSPAPTASGKIYIRTFGCQMNEYDSDKMMDVLREDQGLEVTDNPEE 60
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVP--QGSRDLKELEGVS 148
AD+ L NTC+V+ +Q + + + + + KK + V GCV +G +K V
Sbjct: 61 ADVILFNTCSVREKAQEKVFSDLGRVQHLKKLNPHLVIGVGGCVASQEGEAIVKRAPYVD 120
Query: 149 IV-GVQQIDRVVEVV----EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCL 203
+V G Q + R+ E++ +E + ++ +K ++P R + I GC
Sbjct: 121 VVFGPQTLHRLPELIRRRRDEGVSQVDISFPEIEKFD--NMPPARIEGATAFVSIMEGCS 178
Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRDIGVN 258
C++C + RG S E ++ V + GV+EV L ++ AY G D +
Sbjct: 179 KYCSFCVVPYTRGEEVSRPFEDVLTEVADLADQGVREVTLLGQNVNAYRGRMEGSDEIAD 238
Query: 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA 318
+LL V E+P G +R ++P + + + E R P + SFLH+PVQ+GSD
Sbjct: 239 FAMLLE-YVHEIP--GIERIRYTTSHPKEMTQRMVEA--YARLPKLVSFLHLPVQAGSDR 293
Query: 319 VLSVSQK 325
VLS ++
Sbjct: 294 VLSAMKR 300
>gi|114561896|ref|YP_749409.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
frigidimarina NCIMB 400]
gi|122300718|sp|Q087J4.1|MIAB_SHEFN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|114333189|gb|ABI70571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella frigidimarina
NCIMB 400]
Length = 474
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 149/279 (53%), Gaps = 20/279 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KT+GC N+ DS MA L + GY LT+++ EAD+ L+NTC+++ +Q +
Sbjct: 2 SKKLHIKTWGCQMNEYDSSKMADLLDDYQGYTLTEDASEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP-QGSRDLKE-LEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + KS K + V GCV Q + +K+ + V I+ G Q + R+ E++E+ +G
Sbjct: 62 QLGRWKSLKDKNPNLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIEQIQRG 121
Query: 169 HEVRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+ + + ++ D LP+ R + + I GC C++C + RG S ++ +
Sbjct: 122 EKAVIDISFPEIEKFDRLPEPRADGPTAFVSIMEGCSKYCSFCVVPYTRGEEVSRPLDDV 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ V + A GV+EV L ++ AY D + L +VA + DG LR +
Sbjct: 182 ILEVAQLAAQGVREVNLLGQNVNAYRGATHDDEICTFAELLRLVASI--DGIDRLRFTTS 239
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLS 321
+P +E ++I +V P + SFLH+PVQSGSD +L+
Sbjct: 240 HP---IEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILT 275
>gi|258416055|ref|ZP_05682323.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9763]
gi|257839203|gb|EEV63679.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus aureus
A9763]
Length = 514
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 134/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKV + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVCEGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>gi|425469267|ref|ZP_18848217.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9701]
gi|389882035|emb|CCI37463.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9701]
Length = 446
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 138/280 (49%), Gaps = 20/280 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G KE+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYKEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L + + L P V H+P QSG + +L ++
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKR 284
>gi|254562377|ref|YP_003069472.1| tRNA modification enzyme MiaB [Methylobacterium extorquens DM4]
gi|254269655|emb|CAX25627.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
tRNA methylthiolase [Methylobacterium extorquens DM4]
Length = 446
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 134/281 (47%), Gaps = 23/281 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NTC ++ + + + + +
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
+ K +VVAGCV Q G L V +VG Q R+ +++ ++
Sbjct: 65 RVLKGERAESGQDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 181 VVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLRYTTSH 240
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
P + L IA +P V +LH+PVQSGSD +L +
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRILQAMNR 279
>gi|428316469|ref|YP_007114351.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oscillatoria
nigro-viridis PCC 7112]
gi|428240149|gb|AFZ05935.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oscillatoria
nigro-viridis PCC 7112]
Length = 466
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 139/284 (48%), Gaps = 28/284 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ EA + L NTCT++ ++ + + + +
Sbjct: 29 HITTFGCQMNKADSERMAGILENMGFEFSEDPNEASLILYNTCTIRDNAEQRVYSNLGRQ 88
Query: 122 KSAKKP-----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K+ LVVAGCV Q R + EL+ V +G Q +R+ +++E+ +G++V
Sbjct: 89 AHRKRQEPGLTLVVAGCVAQQEGEALLRRVPELDLV--MGPQHANRLEDLLEQVFEGNQV 146
Query: 172 RLLHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ D+ K RR+ K + + GC CTYC + RG S E++ +
Sbjct: 147 VATEAVEIME-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRMPEAIRAEM 205
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGM 282
+ G KEV L ++ AYGRD+ P L V ++P G LR
Sbjct: 206 EDLGRQGYKEVTLLGQNIDAYGRDLPGTKPDGSHQHTLTDLLYFVQDVP--GVDRLRFAT 263
Query: 283 TNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
++P + E L K AE+ P V H+P QSG + +L +
Sbjct: 264 SHPRYFTERLIKACAEL---PQVCEHFHIPFQSGDNDILKAMSR 304
>gi|169832193|ref|YP_001718175.1| MiaB-like tRNA modifying protein [Candidatus Desulforudis
audaxviator MP104C]
gi|169639037|gb|ACA60543.1| MiaB-like tRNA modifying enzyme [Candidatus Desulforudis
audaxviator MP104C]
Length = 450
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 131/279 (46%), Gaps = 23/279 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ T GC NQ++++ +A GY + E AD++++NTCTV ++ +
Sbjct: 4 VAFYTLGCKVNQAETQGLAALFRDRGYKVIPFEETADVYVVNTCTVTREGDRKSRQVVRR 63
Query: 121 CKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
A +VV GC Q + + GVS+V G +R+V++VE+ V +
Sbjct: 64 AVRANPEALVVVTGCYAQVAPEEAGAIPGVSLVIGTSGRERIVDLVEQAAARCPVPAEKK 123
Query: 177 KKLPALDLPKVRRNKFVEILP-------------INVGCLGACTYCKTKHARGHLGSYTV 223
P L + + + + E LP + GC CTYC +ARG L S
Sbjct: 124 GPGPFLAVGDIEQAREFEDLPGTADPGRTRAFIKVQEGCRDFCTYCIVPYARGPLRSRPP 183
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGM 282
E ++ R ++ G E+ L+ + GAYGRD+G NLP L+ +V +P G LR+
Sbjct: 184 ERVLELARGLVDRGYSELVLTGVNLGAYGRDLGTENLPGLVRRLV-RIP--GLARLRLSS 240
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
P I L E V +P H+P+QSGSD+VLS
Sbjct: 241 VEPNEITRELVEA--VAENPVCAPHFHIPLQSGSDSVLS 277
>gi|428300349|ref|YP_007138655.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 6303]
gi|428236893|gb|AFZ02683.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 6303]
Length = 454
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 141/278 (50%), Gaps = 26/278 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ EA++ L NTC+++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGFEWSEDPHEANLVLFNTCSIRDNAEHKVYSYLGRL 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LV+AGCV Q G L+ + + +V G Q +R+ +++++ G++V +
Sbjct: 69 ARRKHDEPDLTLVMAGCVAQQEGESLLRRVPELDLVMGPQHANRLKDLLQQVFDGNQV-V 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
D+ K RR+ V +NV GC CTYC RG S T E++ +
Sbjct: 128 ATEAVYIMEDITKPRRDSSVTSW-VNVIYGCNERCTYCVVPGVRGVEQSRTPEAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G NL L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEVTLLGQNIDAYGRDLPGTTPEGRNLHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+P + E L K AE+ P V H+P QSG + VL
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNEVL 279
>gi|158337776|ref|YP_001518952.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acaryochloris
marina MBIC11017]
gi|229890405|sp|B0C0E2.1|MIAB_ACAM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|158308017|gb|ABW29634.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acaryochloris marina
MBIC11017]
Length = 454
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 141/277 (50%), Gaps = 24/277 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--- 118
++ T+GC N++DSE MAG L GY ++N ++A++ L NTCT++ ++ + + +
Sbjct: 9 HITTYGCQMNKADSERMAGVLENMGYQWSENPDDANLILCNTCTIRDNAEHKVYSYLGRQ 68
Query: 119 AKCKSAKK--PLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
AK K A+ LVVAGCV Q D L+ + + +V G Q +R+ +++E+ G +V L
Sbjct: 69 AKRKHAQPDLTLVVAGCVAQQEGDALLRRVPELDLVMGPQHANRLQDLLEQVASGQQV-L 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 128 ATEPIHIVEDITKPRRDSAVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G + L + + V ++P G +R +
Sbjct: 187 QLGEQGFKEVTLLGQNIDAYGRDLPGTTSEGRHQHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+P + E L I P V H+P QSG + VL
Sbjct: 245 HPRYFTERL--IQACYELPKVCEHFHIPFQSGDNDVL 279
>gi|363889771|ref|ZP_09317125.1| MiaB-like tRNA modifying enzyme YliG [Eubacteriaceae bacterium CM5]
gi|361966310|gb|EHL19230.1| MiaB-like tRNA modifying enzyme YliG [Eubacteriaceae bacterium CM5]
Length = 438
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 141/290 (48%), Gaps = 41/290 (14%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTL 117
E +++ GCS N D+E M L+ GY +T + EA I ++NTC ++S + ++DT+
Sbjct: 3 EKFILESLGCSKNLVDAEEMVYILNKNGYEMTGDINEATIAIVNTCGFIESAKEESIDTI 62
Query: 118 --IAKCKSAK-KPLVVAGCVPQGSRDLKEL-----EGVSIVGVQQIDRVVEVVEETLKGH 169
IA+ K K L+V GC+ Q R KEL E + +G D + V+ KG
Sbjct: 63 FEIARYKQKNLKYLIVTGCLAQ--RYYKELKDKIPEVDAFLGTTSYDTIYNVI----KGL 116
Query: 170 EV------------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
E+ +L H KK K+ + + + I GC +CTYC RG
Sbjct: 117 EIGQDNSLILNADRKLEHTKK-------KILTDNYYAYVKIAEGCDNSCTYCIIPRLRGR 169
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGS 275
S +E ++ V+ + + GVKE+ L ++DT YG DI LP LL + +E+ DG
Sbjct: 170 YKSRGMEEIITEVQDLASQGVKEIILIAQDTSKYGLDIYKEKKLPELLRKL-SEI--DGI 226
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+R T P I E L + EV + V S+ +P+Q +D +L + +
Sbjct: 227 KWIRFLYTYPEDITEEL--VQEVKNNDKVCSYFDIPIQHANDRILKLMNR 274
>gi|260437149|ref|ZP_05790965.1| RNA modification enzyme, MiaB family [Butyrivibrio crossotus DSM
2876]
gi|292810461|gb|EFF69666.1| RNA modification enzyme, MiaB family [Butyrivibrio crossotus DSM
2876]
Length = 439
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 135/269 (50%), Gaps = 20/269 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLIAKCKS 123
+ GC N DSE M G L GY TDN EEADI +INTC + + +++T++ K
Sbjct: 7 SLGCDKNLVDSEMMMGLLHDRGYEFTDNEEEADIIVINTCGFINDAKEESINTILEMAKY 66
Query: 124 AK---KPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ K L+VAGC+ + ++ L+EL E +IVG D++ +VV++ L + L +
Sbjct: 67 KENNLKALIVAGCLVERYKNEILQELPEIDAIVGTTAFDKICDVVDDVLADKKHNEL--E 124
Query: 178 KLPALDLPKVRR----NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ + P V+R + L I GC CTYC RG S ++ LV +
Sbjct: 125 SINKMCRPDVKRIITTGGYYSYLKIAEGCDKHCTYCSIPMIRGAYRSVPMDELVKEAEYL 184
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+GVKE+ + +++ YG+D+ LP LL+ + ++P G +R+ P I +
Sbjct: 185 ADNGVKELIIVAQEITVYGKDLYGEKKLPELLHRL-CKIP--GIQWIRLLYCYPEEITDE 241
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L E + C Y + +P+Q SD +L
Sbjct: 242 LIETIRTEKKICHY--IDMPIQHASDKIL 268
>gi|427706129|ref|YP_007048506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nostoc sp. PCC 7107]
gi|427358634|gb|AFY41356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nostoc sp. PCC 7107]
Length = 454
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 140/279 (50%), Gaps = 28/279 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ TFGC N++DSE MAG L G+ +++ AD+ L NTCT++ ++ + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFSEDPNHADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 120 ---KCKSAKKPLVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K + A LVVAGCV Q R + EL+ V +G Q +R+ +++E +G++V
Sbjct: 69 AKRKHEKADLTLVVAGCVAQQEGEALLRRVPELDLV--MGPQHANRLKDLLESVFEGNQV 126
Query: 172 RLLHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ D+ + RR+ K + + GC CTYC + RG S T E++ +
Sbjct: 127 VATEAVHIME-DITQPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEM 185
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGM 282
+ G KE+ L ++ AYGRD+ G +L + + V ++P G LR
Sbjct: 186 VELGRQGYKEITLLGQNIDAYGRDLPGVTPEGRHLHTFTDLLYYVHDVP--GVERLRFAT 243
Query: 283 TNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + E L K AE+ P V H+P QSG + +L
Sbjct: 244 SHPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELL 279
>gi|422301887|ref|ZP_16389252.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9806]
gi|389789024|emb|CCI14978.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9806]
Length = 446
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 138/280 (49%), Gaps = 20/280 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L + + L P V H+P QSG + VL ++
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDVLKAMKR 284
>gi|336323574|ref|YP_004603541.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Flexistipes sinusarabici DSM 4947]
gi|336107155|gb|AEI14973.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Flexistipes sinusarabici DSM 4947]
Length = 443
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 135/275 (49%), Gaps = 25/275 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+KTFGC N+ DS+ + +G+ ++ E AD ++NTC+V+ Q + + I +
Sbjct: 4 VYLKTFGCQMNEYDSQRILSVFRNYGFIPSEIPETADFAMLNTCSVREKPQHKVSSEIGR 63
Query: 121 CKSAK-----KPLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVR 172
K K + V GCV Q G L + V ++G + ++R+ +++ L G V
Sbjct: 64 LKKIKLKNPEFKIGVCGCVAQQEGENILSDFPYVDFVIGTEAVNRLDVIIDAVLNGERVA 123
Query: 173 LLHRKKLPALDLPKVRR----NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ K + +P RR + +V I+ GC C+YC + RG S ++
Sbjct: 124 DVEMKS-ENISIPAFRREASPSAYVTIMK---GCNNYCSYCIVPYVRGSEVSRKSTEIID 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
++ +I GVKEV L ++ +YG+ D +N P LL I +G LR ++P
Sbjct: 180 EIKFLIDSGVKEVTLLGQNVNSYGKNLDENINFPKLLYMIDK---IEGLKRLRFVTSHPK 236
Query: 287 FILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVL 320
+ +E+ +R + FLH+P+QSGSD +L
Sbjct: 237 ---DFSREVIFAMRDIDKICEFLHLPLQSGSDRIL 268
>gi|312898442|ref|ZP_07757832.1| MiaB-like tRNA modifying enzyme YliG [Megasphaera micronuciformis
F0359]
gi|310620361|gb|EFQ03931.1| MiaB-like tRNA modifying enzyme YliG [Megasphaera micronuciformis
F0359]
Length = 443
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 136/274 (49%), Gaps = 17/274 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTL 117
E I + GCS N D+E M G L +TD+ +ADI ++NTCT ++ Q ++D +
Sbjct: 2 EKIAFVSLGCSKNLIDTEVMLGILKDKHMGMTDDPAQADIIIVNTCTFIEKAKQESIDAI 61
Query: 118 IA----KCKSAKKPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHE 170
I K + K L+V GC+ Q ++ LKEL V +++G DR+ E V G
Sbjct: 62 IEAGRYKTEGRCKILIVTGCLSQQYQEELLKELPEVDALLGTGSWDRIWEAVTAGKTGKR 121
Query: 171 VRLLHR-KKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ L + +V + + I GC CT+C H RG L S TVES+
Sbjct: 122 ACFMDDVSHLYDQNTSRVLTTPTYSAYVKIGEGCNNGCTFCIIPHVRGPLYSRTVESVTA 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPP 286
VR + A GVKE+ L ++DT +YG D+ LP LL +V +G +R+ P
Sbjct: 182 EVRQLAAGGVKEINLIAQDTTSYGFDLAGKSLLPDLLRELV---KIEGIEWIRLFYLYPH 238
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
F + L E+ +++ + ++ +P+Q S +VL
Sbjct: 239 FFTDELTEL--IVKEEKICPYVDLPLQHISQSVL 270
>gi|336452592|ref|YP_004607058.1| tRNA-i(6)A37 methylthiotransferase [Helicobacter bizzozeronii
CIII-1]
gi|335332619|emb|CCB79346.1| tRNA-i(6)A37 methylthiotransferase [Helicobacter bizzozeronii
CIII-1]
Length = 437
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 135/280 (48%), Gaps = 19/280 (6%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +Y++T GC+ N DSE++A +L GY D +EAD+ LINTC+V+ + + +
Sbjct: 5 ATKKLYIETMGCAMNTRDSEHLASELHKVGYVGVDQPQEADLILINTCSVREKPERKLFS 64
Query: 117 LIAKCKSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
I KKP + V GC G+ LK+ V V G +Q ++ +++ + K E
Sbjct: 65 EIGHFAKIKKPGAKIGVCGCSASHMGASILKKAPSVDFVLGARQTSKITQIIHQP-KAIE 123
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V L H P +++ ++ I+VGC CTYC H RG S ++ ++
Sbjct: 124 VGLDHDDSTYVFATPP--KSQLKALINISVGCDKHCTYCIVPHTRGKEISIPMDLILKEA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ + G KE+ L ++ YG VN LL+A+ + RI T+P
Sbjct: 182 KRRVQLGTKEIMLLGQNVNNYGVRFSNAHPKVNFNHLLDAL-----SQIEGLERIRFTSP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ + R+P V +H+P+QSGS+A+L ++
Sbjct: 237 HPLHMDNAFLECFARNPKVCKSIHIPLQSGSNAILKAMKR 276
>gi|373494902|ref|ZP_09585498.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium infirmum F0142]
gi|371967100|gb|EHO84574.1| MiaB-like tRNA modifying enzyme YliG [Eubacterium infirmum F0142]
Length = 438
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 132/285 (46%), Gaps = 17/285 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
++ +++ T GC N +DSE+ AG L GY + D+ EEADI ++NTC + ++
Sbjct: 3 SKKVFIDTLGCPKNFNDSEFAAGVLEENGYEIIDSPEEADIIMVNTCGFINDAKKESIEH 62
Query: 118 IAKCKSAKK---PLVVAGCVPQGSRDLKEL-----EGVSIVGVQQIDRVVEVVEETLKGH 169
I KK LV++GC+ Q R +EL E I+GV Q ++ E++ + H
Sbjct: 63 IFDMSYRKKDGGKLVISGCLSQ--RYSEELSIEIPEADCIIGVNQYSKLPEILSDIDNNH 120
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
V ++ K+ N + L I GC CTYC RG S +E +V
Sbjct: 121 VVANSCDLDYLEKNVRKLSNNPYTASLKIAEGCDNTCTYCIIPMIRGKYRSKKMEDIVAE 180
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + A G KE+ L ++D YGRD+ LP LL + DG +R+
Sbjct: 181 ARELAAAGCKELILIAQDLTYYGRDLYGKFVLPELLRELC---KIDGIEWIRLMYCYDER 237
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332
I + L ++ C Y + +P+Q SD VL ++ KS+
Sbjct: 238 ITDELIKVMAEEEKICKY--IDIPLQHASDRVLKSMRRQTTGKSI 280
>gi|357058521|ref|ZP_09119372.1| MiaB-like tRNA modifying enzyme [Selenomonas infelix ATCC 43532]
gi|355373849|gb|EHG21157.1| MiaB-like tRNA modifying enzyme [Selenomonas infelix ATCC 43532]
Length = 438
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 134/285 (47%), Gaps = 27/285 (9%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
G + +M T GC NQ ++E M G GY + E AD+++INTC+V S
Sbjct: 8 GVKAAFM-TLGCKVNQFETETMEGLFRVRGYDIVPFEERADVYVINTCSVTHLSDRKSRQ 66
Query: 117 LIAKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 169
LI + + V GC Q +++ L+GV +V G ++ R+V+ VE +L+
Sbjct: 67 LIRRAARTNPAACIAVTGCYAQVAPEEIRALDGVRVVIGTKERARIVDYVEASLRADTGA 126
Query: 170 --------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ R+ + +P LP R L I GC CT+C +ARG + S
Sbjct: 127 FGTITDIMQARVF--EDIPLHALPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSR 180
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
+ ++ +R ++ G EV L+ GAYG D+ P L +A L G LR+G
Sbjct: 181 ELSAVAREMRLLVDAGFHEVVLTGIHLGAYGIDLA-ERPTLADACRTALAERGLRRLRLG 239
Query: 282 MTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSVSQK 325
+E ++ E++R P + LH+P+Q+GSDAVL +
Sbjct: 240 SLES---VELSADLLELMRTEPRFAAHLHLPLQAGSDAVLRAMNR 281
>gi|427727572|ref|YP_007073809.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Nostoc sp. PCC 7524]
gi|427363491|gb|AFY46212.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Nostoc sp. PCC 7524]
Length = 454
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 138/280 (49%), Gaps = 30/280 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++ AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFCEDPNHADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K LVVAGCV Q R + EL+ V +G Q +R+ +++E G++V
Sbjct: 69 AKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLV--MGPQHANRLKDLLESVFAGNQV 126
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ D+ + RR+ V +NV GC CTYC + RG S T E++
Sbjct: 127 VATEAVHIME-DITQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRTE 184
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIG 281
+ + G KE+ L ++ AYGRD+ G +L + + V ++P G LR
Sbjct: 185 MEQLGQQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GVERLRFA 242
Query: 282 MTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + E L K AE+ P V H+P QSG + +L
Sbjct: 243 TSHPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELL 279
>gi|427420460|ref|ZP_18910643.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Leptolyngbya sp. PCC 7375]
gi|425756337|gb|EKU97191.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Leptolyngbya sp. PCC 7375]
Length = 450
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 137/277 (49%), Gaps = 24/277 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G T+N EAD+ L NTCT++ ++ + + + K
Sbjct: 7 HITTFGCQMNKADSERMAGILDDMGMNWTENPLEADVVLYNTCTIRDNAEQKVYSYLGKQ 66
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G L+ + + +V G Q +R+ +++E+ G++V
Sbjct: 67 AKRKQSDPNVTLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLSDLLEQVFSGNQVVA 126
Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ K RR+ K + + GC CTYC RG S T E++ +
Sbjct: 127 TEPVHIME-DITKPRRDSKISAWVNVIYGCNERCTYCVVPGVRGIEQSRTPEAIRAEMEL 185
Query: 233 VIADGVKEVWLSSEDTGAYGRDI-GV-------NLPILLNAIVAELPPDGSTMLRIGMTN 284
+ G EV L ++ AYGRD+ G+ N L V ++P G +R ++
Sbjct: 186 LGQQGYTEVTLLGQNIDAYGRDLPGITPEGRRQNTLTDLLYYVHDVP--GIERIRFATSH 243
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P + E L K AE+ P V H+P QSG + VL
Sbjct: 244 PRYFTERLIKACAEL---PKVCEHFHIPFQSGDNDVL 277
>gi|427414198|ref|ZP_18904388.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella ratti
ACS-216-V-Col6b]
gi|425714574|gb|EKU77577.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella ratti
ACS-216-V-Col6b]
Length = 436
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 139/272 (51%), Gaps = 18/272 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ T+GC N+SDSE +A QL GY T+N EEAD+ ++NTC V+ ++ + I +
Sbjct: 5 YIFTYGCQMNESDSERLAHQLETAGYTNTENFEEADLIILNTCCVRETAEHKIYGRIGEL 64
Query: 122 KSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K K K L++A GC+ Q ++ K + IV G + + E+V E + H+ ++
Sbjct: 65 KHLKEKNKNLIIAITGCMAQKNQADMFKRAPHIDIVLGTHNLRHINEMVAEVQRTHKHQI 124
Query: 174 -LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ +L F +PI GC CTYC H RG S +E++V V+
Sbjct: 125 NIEMDNTVLHELEAKPMGTFSAWVPIMNGCNKFCTYCIVPHVRGREISRPIEAIVEDVKK 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ G KE+ L ++ +YG D G + L++A+ +P G +R ++P +
Sbjct: 185 LGQSGHKEITLLGQNVNSYGLDFKDGTHFGDLIDALDG-IP--GIERIRYMTSHPQ---D 238
Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLS 321
KE+ + L R V + LH+P+QSGS+ +L
Sbjct: 239 MNKEMIDALGRSTNVVTQLHLPIQSGSNRILQ 270
>gi|304436321|ref|ZP_07396298.1| MiaB family RNA modification enzyme [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304370676|gb|EFM24324.1| MiaB family RNA modification enzyme [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 442
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 136/274 (49%), Gaps = 29/274 (10%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA---- 119
+ GC+ N D+E M G + G +T++ EADI ++NTC ++S + ++ T++
Sbjct: 7 SLGCAKNLVDTEVMLGIMREHGIDITNDPSEADILIVNTCAFIQSAKEESITTVLGMADY 66
Query: 120 ----KCKSAKKPLVVAGCVPQ--GSRDLKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+C+S L+VAGC+ Q G + L E+ E +I+G R++EV+E TLKG R
Sbjct: 67 KETGRCRS----LIVAGCLGQRYGQQLLDEIPEADAIIGTGAWSRIMEVIEATLKGR--R 120
Query: 173 LLHRKKLPAL---DLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
LL K + P++R + + I GC C +C RG S +E +V
Sbjct: 121 LLIAGKDDTIYDAKTPRLRTTPNYTAYVKIAEGCDHRCAFCAIPLIRGSFRSRPMEDIVA 180
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPP 286
R + A GV+E+ L ++D+ YG D LP LL + DG +R+ + P
Sbjct: 181 EGRELAAAGVRELVLIAQDSANYGLDCYQKPMLPTLLRELA---KIDGIAWIRVLYSYPK 237
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ + L E+ P V ++ +P+Q DAVL
Sbjct: 238 YFTDELIEV--FATEPKVVKYVDLPLQHAHDAVL 269
>gi|238926969|ref|ZP_04658729.1| 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531]
gi|238885203|gb|EEQ48841.1| 2-methylthioadenine synthetase [Selenomonas flueggei ATCC 43531]
Length = 442
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 138/274 (50%), Gaps = 29/274 (10%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI----- 118
+ GC+ N D+E M G + G +T+ EADI ++NTC ++S + ++ T++
Sbjct: 7 SLGCAKNLVDTEVMLGIMREHGIDITNEPSEADILIVNTCAFIQSAKEESITTVLGMADY 66
Query: 119 ---AKCKSAKKPLVVAGCVPQ--GSRDLKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+C+S L+VAGC+ Q G + L E+ E +I+G R++EV+EETLKG R
Sbjct: 67 KETGRCRS----LIVAGCLGQRYGQQLLDEIPEADAIIGTGAWSRIMEVIEETLKGR--R 120
Query: 173 LLHRKKLPAL---DLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
LL K + P++R + + I GC C +C RG S +E +V
Sbjct: 121 LLIAGKDDTIYDAKTPRLRTTPHYTAYVKIAEGCDHRCAFCAIPLIRGGFRSRPMEDIVA 180
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ + +GV+E+ L ++D+ YG D LP+LL A+ DG +R+ + P
Sbjct: 181 EGQELAENGVRELVLIAQDSANYGLDRYHEPMLPMLLRALA---KIDGIAWIRVLYSYPK 237
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ + L E+ P V ++ +P+Q DAVL
Sbjct: 238 YFTDELIEVFAT--EPKVVKYVDLPLQHAHDAVL 269
>gi|347753703|ref|YP_004861268.1| MiaB family RNA modification protein [Bacillus coagulans 36D1]
gi|347586221|gb|AEP02488.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1]
Length = 515
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 135/274 (49%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY T+ E+AD+ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTETVEDADVVLLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
K K KP + V GC+ Q ++ L++ V +V G I R+ +++E K
Sbjct: 131 LKPLKTEKPDMLIGVCGCMSQEESVVNKILQKHPHVDMVFGTHNIHRLPHILKEAYMSKA 190
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDVIESLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D +L L ++ +L +R ++P
Sbjct: 251 EVRELAAKGYKEITLLGQNVNAYGKDFD-DLEYGLGDLMDDLRKINIPRIRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS +L +
Sbjct: 310 DDRLIEV--LAKKGNLVEHIHLPVQSGSSEILKI 341
>gi|212712962|ref|ZP_03321090.1| hypothetical protein PROVALCAL_04060 [Providencia alcalifaciens DSM
30120]
gi|422018994|ref|ZP_16365545.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Providencia
alcalifaciens Dmel2]
gi|212684440|gb|EEB43968.1| hypothetical protein PROVALCAL_04060 [Providencia alcalifaciens DSM
30120]
gi|414104180|gb|EKT65752.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Providencia
alcalifaciens Dmel2]
Length = 476
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 139/280 (49%), Gaps = 20/280 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+YMKT+GC N+ DS M L S GY LTD +EEAD+ L+NTC+++ +Q + +
Sbjct: 7 LYMKTWGCQMNEYDSSKMVSLLESTHGYQLTDIAEEADLLLLNTCSIREKAQEKVFHQLG 66
Query: 120 KCK--SAKKPLV---VAGCVPQGSRDLKELEG--VSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K KKP + V GCV D V IV G Q + R+ E++ + ++G+
Sbjct: 67 RWKFFKDKKPDIIIGVGGCVASQEGDFIRQRAPCVDIVFGPQTLHRLPEMINQ-IQGNRS 125
Query: 172 RLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ P ++ LP+ R + I GC CT+C + RG S + ++
Sbjct: 126 PIID-ISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPCDDIL 184
Query: 228 GRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ + A GV+EV L ++ AY G + + DG +R ++P
Sbjct: 185 FEIAQLAAQGVREVNLLGQNVNAYRGETFDGEICSFAELLRLVASIDGIDRVRFTTSHP- 243
Query: 287 FILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+E +I EV R P + SFLH+PVQSGSD +L++ ++
Sbjct: 244 --IEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILTMMKR 281
>gi|229890681|sp|B7KVE0.2|MIAB_METC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
Length = 446
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 133/276 (48%), Gaps = 23/276 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NTC ++ + + + + +
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
+ K +VVAGCV Q G L V +VG Q R+ +++ ++
Sbjct: 65 RVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 181 VVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGQLMDALSAVPGLLRLRYTTSH 240
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P + L IA +P V +LH+PVQSGSD +L
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRIL 274
>gi|23099083|ref|NP_692549.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oceanobacillus
iheyensis HTE831]
gi|81746368|sp|Q8EQR4.1|MIAB_OCEIH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|22777311|dbj|BAC13584.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 519
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 141/283 (49%), Gaps = 23/283 (8%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
KI + ++T+GC N+ D+E MAG LS GY T +EEADI L+NTC ++ +++
Sbjct: 71 KIGHGKKFLIRTYGCQMNEHDTEVMAGILSEMGYESTTVTEEADIILLNTCAIRENAENK 130
Query: 114 MDTLIAKCKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVE 163
+ I K K + V GC+ Q R L++ + + ++ G I R+ +V+
Sbjct: 131 VFGEIGHLKPLKLENPDLIIGVCGCMSQEESVVDRILQKHQHIDLIFGTHNIHRLPHLVK 190
Query: 164 ETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
E L G E V + ++ +LPK R+ K + I GC CTYC RG S
Sbjct: 191 EALFGKEMIVEVWSKEGDIIENLPKARKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSR 250
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAI-VAELPPDGSTM 277
+ ++ VR ++A G +EV L ++ AYG+ DI L L+N I ++P
Sbjct: 251 RPKDIIQEVRHLVAQGYQEVTLLGQNVNAYGKDFEDIEYGLGDLMNDIHKIDIP-----R 305
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+R ++P + L E+ + + + +H+PVQSGS +L
Sbjct: 306 VRFTTSHPRDFDDRLIEV--LAQGGNLLDHIHLPVQSGSSEIL 346
>gi|255505363|ref|ZP_05345671.3| RNA modification enzyme, MiaB family [Bryantella formatexigens DSM
14469]
gi|255268564|gb|EET61769.1| ribosomal protein S12 methylthiotransferase RimO [Marvinbryantia
formatexigens DSM 14469]
Length = 446
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 130/274 (47%), Gaps = 21/274 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA 119
I + GC N DSE M G L+ GY +TD+ E+ADI +INTC + + ++ T++
Sbjct: 4 ILFISLGCDKNLVDSEEMLGLLARRGYTMTDDEEQADIIIINTCCFINDAKEESVQTILE 63
Query: 120 KCKSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVR 172
+ K + L+V GC+ Q R+ E+ V +++G D +VE VE L G +
Sbjct: 64 MAEHRKNGTCRALIVTGCLAQRYREEITTEISEVDAVLGTSSYDEIVETVERVLAGQ--K 121
Query: 173 LLHRKKLPALDLPK----VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
LH ++L L P V L I GC CTYC RG+ S +E L+
Sbjct: 122 YLHFQELDRLPAPDGGRVVTTGGHYAHLKIAEGCDKHCTYCIIPQIRGNFRSVPMERLLA 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ + GV+E+ L +++T YG D+ +L +LL + G +RI P
Sbjct: 182 QAEELAGGGVRELILVAQETTLYGVDLYGKKSLHLLLQELC---KIKGIRWIRILYCYPE 238
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
I E L E + C Y L +P+Q S+ +L
Sbjct: 239 EIYEELIETIRTEKKICHY--LDLPIQHASNRIL 270
>gi|297617812|ref|YP_003702971.1| MiaB-like tRNA modifying protein [Syntrophothermus lipocalidus DSM
12680]
gi|297145649|gb|ADI02406.1| MiaB-like tRNA modifying enzyme [Syntrophothermus lipocalidus DSM
12680]
Length = 444
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 19/282 (6%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
I T+Y T GC NQ +SE + Q S +GY + E AD++++NTC V S+
Sbjct: 3 IKARVTVY--TLGCKVNQVESENIKQQFSDYGYQILSGDEVADVYVVNTCAVTHVSERKS 60
Query: 115 DTLI--AKCKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVE----ETL 166
++ AK K+ K +V GC+ Q + +L E ++G DR+ E+V+ ++
Sbjct: 61 RAMLRRAKRKNPKAVVVATGCLAQVAPNLLAAMPEVDLVIGNSSKDRIAELVQNHRGQSS 120
Query: 167 KGHEVRLLHRKKLP--ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
K V L ++ L A LP R + + I GC C+YC +ARG + S E
Sbjct: 121 KAVVVGELSKEPLRRGAWCLPAYERTR--AFVKIQDGCESYCSYCLVPYARGPVRSKLPE 178
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMT 283
+V + +++ G KE+ ++ TG YG+D+ +L LL ++ ++ G LR+
Sbjct: 179 DVVREIDWLVSAGFKEIVITGIHTGMYGKDLADWDLVRLLETVLVKV--QGDYRLRLSSI 236
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
P I + L E+ + C + LH+P+QSGSD VL + +
Sbjct: 237 EPTEITKKLIELMASEKKLCRH--LHIPLQSGSDRVLKLMNR 276
>gi|75909246|ref|YP_323542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anabaena
variabilis ATCC 29413]
gi|123758760|sp|Q3M8N9.1|MIAB_ANAVT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|75702971|gb|ABA22647.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anabaena variabilis ATCC
29413]
Length = 454
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 139/280 (49%), Gaps = 30/280 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFSEDPNNADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K LVVAGCV Q R + EL+ V +G Q +R+ +++E G++V
Sbjct: 69 AKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLV--MGPQHANRLKDLLESVFAGNQV 126
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ D+ + RR+ V +NV GC CTYC + RG S T E++
Sbjct: 127 VATEAVHIME-DITQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAVRAE 184
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIG 281
+ + G KE+ L ++ AYGRD+ G +L + + V ++P G +R
Sbjct: 185 MEELGRQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GIERIRFA 242
Query: 282 MTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + E L K AE+ P V H+P QSG + +L
Sbjct: 243 TSHPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQLL 279
>gi|411120095|ref|ZP_11392471.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoriales cyanobacterium JSC-12]
gi|410710251|gb|EKQ67762.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoriales cyanobacterium JSC-12]
Length = 454
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 141/278 (50%), Gaps = 26/278 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ D E A++ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEKMGFEWADEPENANLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + + +V G Q +++ ++E+ G++V
Sbjct: 69 AKRKQEQPDLTLVVAGCVAQQEGEKLLRRVPELDLVMGPQHANQLESLLEQVFNGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TDPVHIME-DITKPRRDSAVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRSEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G +L L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEVTLLGQNIDAYGRDLPGVKVEGRHLHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+P + E L + AE+ P + H+P QSG + VL
Sbjct: 245 HPRYFTERLIRACAEL---PKLCEHFHIPFQSGDNEVL 279
>gi|218531460|ref|YP_002422276.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Methylobacterium extorquens CM4]
gi|218523763|gb|ACK84348.1| RNA modification enzyme, MiaB family [Methylobacterium extorquens
CM4]
Length = 462
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 133/276 (48%), Gaps = 23/276 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NTC ++ + + + + +
Sbjct: 21 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 80
Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
+ K +VVAGCV Q G L V +VG Q R+ +++ ++
Sbjct: 81 RVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 137
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 138 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 196
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 197 VVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGQLMDALSAVPGLLRLRYTTSH 256
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P + L IA +P V +LH+PVQSGSD +L
Sbjct: 257 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRIL 290
>gi|332654850|ref|ZP_08420592.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ruminococcaceae bacterium
D16]
gi|332516193|gb|EGJ45801.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Ruminococcaceae bacterium
D16]
Length = 473
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 145/298 (48%), Gaps = 21/298 (7%)
Query: 43 NHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN 102
+H ++ + P ++ T+GC N++DSE + G L GY T + E+AD+ +IN
Sbjct: 18 DHCHAVAQINAQRPQPPLAFVDTYGCQQNEADSERIRGYLQEMGYGFTQDEEQADVIVIN 77
Query: 103 TCTVKS-PSQSAMDTLIA----KCKSAKKPLVVAGCVPQG---SRDLKE-LEGVSIV-GV 152
TC ++ Q + L A K + + + + GC+ Q ++ +KE V +V G
Sbjct: 78 TCAIREHAEQRVLGNLGALVHVKRRHPGQLICLCGCMAQEAHVAQKVKESYRHVDLVFGP 137
Query: 153 QQIDRVVEVVEETLKGHEVRLLHRKKLP---ALDLPKVRRNKFVEILPINVGCLGACTYC 209
Q + R E + L R+ LP A +P VR++K + I GC C+YC
Sbjct: 138 QVLWRFPEFIHSLLTARG-RVFQTPDLPGSIAEGIPVVRQDKVKAWVSIMYGCNNFCSYC 196
Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIV 267
+ RG S + ++ VR ++ +G K++ L ++ +YG+D+ ++ LL A V
Sbjct: 197 IVPYVRGRERSREPQDILAEVRQLVEEGYKDITLLGQNVNSYGKDLENPMDFADLL-AKV 255
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
E+P G ++R ++P + L E + R V LH+P Q+G+D +L V +
Sbjct: 256 NEIP--GDFLIRFMTSHPKDATQKLFET--MARCEKVAPVLHLPFQAGNDRILKVMNR 309
>gi|358063794|ref|ZP_09150395.1| ribosomal protein S12 methylthiotransferase rimO [Clostridium
hathewayi WAL-18680]
gi|356697993|gb|EHI59552.1| ribosomal protein S12 methylthiotransferase rimO [Clostridium
hathewayi WAL-18680]
Length = 441
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 130/270 (48%), Gaps = 21/270 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
+ GC N D+E M G L+ GY TD+ +EAD+ +INTC + + +++T++ +
Sbjct: 7 SLGCDKNLVDTEMMLGLLNKDGYTFTDDEQEADVIVINTCCFINDAKEESVNTILEMAEL 66
Query: 124 AK----KPLVVAGCVPQGSR-----DLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
K K L+V GC+ Q + ++ E++G I+G D + V++E L G +
Sbjct: 67 KKTGQCKALIVTGCLAQRYKQEIIDEIPEVDG--ILGTSTYDEISNVLKEALGGQHISRF 124
Query: 175 HR-KKLPALDLPKV-RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
H LP +D +V + L I GC CTYC RG+ S +E ++ +
Sbjct: 125 HDLDALPEVDAERVITTGGYYAFLKIAEGCDKHCTYCIIPSLRGNYRSVPIERILKEAES 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ GVKE+ L +++T YG D+ LP LL + G +RI P I +
Sbjct: 185 LAKKGVKELILVAQETTLYGVDLYGEKTLPKLLRELC---KISGIQWIRIQYCYPEEITD 241
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L I + + ++L +P+Q SD +L
Sbjct: 242 EL--IQTIKEEEKICNYLDIPIQHASDKIL 269
>gi|425447602|ref|ZP_18827587.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9443]
gi|389731777|emb|CCI04191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9443]
Length = 446
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 138/280 (49%), Gaps = 20/280 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L + + L P V H+P QSG + +L ++
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKR 284
>gi|261343533|ref|ZP_05971178.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rustigianii
DSM 4541]
gi|282568682|gb|EFB74217.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rustigianii
DSM 4541]
Length = 476
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 142/281 (50%), Gaps = 22/281 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+YMKT+GC N+ DS M L S GY LTD +EEAD+ L+NTC+++ +Q + +
Sbjct: 7 LYMKTWGCQMNEYDSSKMVSLLESTHGYQLTDIAEEADLLLLNTCSIREKAQEKVFHQLG 66
Query: 120 KCK--SAKKPLV---VAGCVPQGSRDLKELEG--VSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K KKP + V GCV D V IV G Q + R+ E++ + ++G+
Sbjct: 67 RWKFFKDKKPDIIIGVGGCVASQEGDFIRQRAPCVDIVFGPQTLHRLPEMINQ-IQGNRS 125
Query: 172 RLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ P ++ LP+ R + I GC CT+C + RG S + ++
Sbjct: 126 PIID-ISFPEIEKFDNLPEPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPCDDIL 184
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP--DGSTMLRIGMTNP 285
+ + A GV+EV L ++ AY R + I A + L DG +R ++P
Sbjct: 185 FEIAQLAAQGVREVNLLGQNVNAY-RGATFDGEICSFAELLRLVASIDGIDRVRFTTSHP 243
Query: 286 PFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+E +I EV R P + SFLH+PVQSGSD +L++ ++
Sbjct: 244 ---IEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILTMMKR 281
>gi|291543948|emb|CBL17057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus
champanellensis 18P13]
Length = 455
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 141/282 (50%), Gaps = 20/282 (7%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+++FGC N +D E + L + GY LT+ E+AD+ L+NTC V+ ++ + + + K
Sbjct: 23 VQSFGCQLNMTDGEKLKWLLLSMGYGLTEEPEQADLILLNTCAVREHAEDRVFGHLGQLK 82
Query: 123 --SAKKPLVV---AGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKG--HE 170
KKP ++ GC+ ++L+ +VG ++R+ ++ E L G H
Sbjct: 83 PYKQKKPGLIIGLCGCMTAEEPVREKLKASYPYVNLVVGTGALERLPAMLLEILGGKKHS 142
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + P+ +L +VR F +PI GC CTYC + RG S + + +V
Sbjct: 143 VDAT-VQSAPSEELSQVRSCSFKASVPIMYGCNNFCTYCIVPYVRGRERSRDPKIIERQV 201
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R +++ G KE++L ++ +YG+D+ G+ P LL + A +G +R ++P
Sbjct: 202 RELVSQGCKEIFLLGQNVNSYGKDLPDGIRFPELLRRLDA---IEGEYWIRFMSSHPKDA 258
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTK 330
L ++ RH V LH+PVQSGSD++L + K
Sbjct: 259 TPELIDVICNSRH--VEKHLHLPVQSGSDSILHAMNRCYTVK 298
>gi|52425745|ref|YP_088882.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mannheimia
succiniciproducens MBEL55E]
gi|81386786|sp|Q65RW3.1|MIAB_MANSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|52307797|gb|AAU38297.1| MiaB protein [Mannheimia succiniciproducens MBEL55E]
Length = 474
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 144/286 (50%), Gaps = 26/286 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S G LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLQSTHGLELTEEAEQADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K KK + V GCV +G + V I+ G Q + R+ E++ + G
Sbjct: 62 QLGRWKELKKKNPNLVIGVGGCVASQEGEHIRERAPYVDIIFGPQTLHRLPEMINQIRAG 121
Query: 169 H----EVRLLHRKKLPALDLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
++ +K L PK FV I+ GC CTYC + RG S +
Sbjct: 122 EKAVLDISFPEIEKFDRLPEPKAEGPTAFVSIME---GCNKYCTYCVVPYTRGEEVSRPL 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRI 280
+ ++ + + GV+EV L ++ AY D G+ L +VA + DG LR
Sbjct: 179 DDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGGICSFAELLRLVAAI--DGIDRLRF 236
Query: 281 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+NP +E +I +V R P + SFLH+PVQ+GSD +L++ ++
Sbjct: 237 TTSNP---IEFTDDIIDVYRDTPELVSFLHLPVQAGSDRILTMMKR 279
>gi|206900889|ref|YP_002250798.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dictyoglomus
thermophilum H-6-12]
gi|229890516|sp|B5YE40.1|MIAB_DICT6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|206739992|gb|ACI19050.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dictyoglomus thermophilum
H-6-12]
Length = 440
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 145/276 (52%), Gaps = 28/276 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ T+GC N+SDSE +AG L GY ++ EEADI L+NTC+V+ ++ + + +
Sbjct: 5 YIITYGCQMNKSDSEKVAGILENLGYTPSEKMEEADIILLNTCSVRERAEEKVFGKLGEL 64
Query: 122 KSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ KK + + GC+ Q ++ +++ V V G + + +++ E+L G + ++
Sbjct: 65 RKLKKRNQNLLIGIFGCMAQRMKEELIEKFPHVDFVLGSYKFTELPKIL-ESLDGKK-KV 122
Query: 174 LHRKKLPA---LDLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + +P+ +D ++R NKF +PI GC CTYC + RG S E ++
Sbjct: 123 VLAEDIPSPQDVDFRVIKRENKFQAWIPIIYGCNNFCTYCIVPYLRGREKSRDPEEIIRE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
V + + GV EV L ++ +YG+D+G N +A+L + + RI F+
Sbjct: 183 VEYLASQGVVEVTLLGQNVDSYGKDLG-------NVDLADLLVEIHRIPRIKRIR--FLT 233
Query: 290 EHLKEIAE-----VLRHPCVYSFLHVPVQSGSDAVL 320
H +++++ V HP V H+P+Q+GSD +L
Sbjct: 234 SHPRDVSDKLIRVVATHPKVCPHWHLPLQAGSDRIL 269
>gi|414078575|ref|YP_006997893.1| tRNA-i(6)A37 modification enzyme MiaB [Anabaena sp. 90]
gi|413971991|gb|AFW96080.1| tRNA-i(6)A37 modification enzyme MiaB [Anabaena sp. 90]
Length = 453
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 140/274 (51%), Gaps = 24/274 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 11 TFGCQMNKADSERMAGILEDMGFEWSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQAKR 70
Query: 125 KKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K+ L+VAGCV Q G+ L+ + + +V G Q +R+ +++E G++V
Sbjct: 71 KQEEPDLTLIVAGCVAQQEGAALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVATEE 130
Query: 177 KKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ D+ + RR+ V + I GC CTYC + RG S T E++ + +
Sbjct: 131 VHIFE-DITQPRRDSQVTAWVNIIYGCNERCTYCVVPNVRGVEQSRTPEAVRSEIEQLAR 189
Query: 236 DGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPF 287
G KE+ L ++ AYGRD+ G +L L + + V ++P G +R ++P +
Sbjct: 190 QGYKEITLLGQNIDAYGRDLPGSTPEGRHLHTLTDLLYYVHDVP--GIERIRFATSHPRY 247
Query: 288 ILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E L K A++ P V H+P QSG + +L
Sbjct: 248 FTERLIKACADL---PKVCEHFHIPFQSGDNELL 278
>gi|297620170|ref|YP_003708275.1| MiaB-like tRNA modifying protein [Methanococcus voltae A3]
gi|297379147|gb|ADI37302.1| MiaB-like tRNA modifying enzyme [Methanococcus voltae A3]
Length = 496
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 144/309 (46%), Gaps = 51/309 (16%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDN-----SEEADIWLINTCTVKSPSQS 112
+ ++++ +GC+ N SD+E + L G+ T N E ++ +INTC V+ ++
Sbjct: 25 QKVHLEGYGCTLNTSDTEIIKNSLIEKGFNVFTGNFNDLKDENINLVVINTCIVRQETEH 84
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQID-----RVVEVVEETLK 167
M + I K K + K ++VAGC+ + K++EG+ + + +V+ V E K
Sbjct: 85 KMISKIKKYKESNKKVIVAGCLAKALS--KKVEGLYDALIMPREAHLSGEIVKAVVEGYK 142
Query: 168 GHEVRL---LHRKKLPALDLPKVRRN----------------------------KFVEIL 196
E+ L +K++ ++ K+ V L
Sbjct: 143 PEEINNKIDLFKKEVENSEISKIDNKLNYLLKNNCTENNNNNNNKIVNNTNNNTNLVMAL 202
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG--RD 254
PI GCLG CTYC K ARG+L SY ++++ + +I G K + ++++DT YG R
Sbjct: 203 PICEGCLGNCTYCIVKVARGNLISYEPKNIIKKSEELIKSGTKCLLITAQDTACYGFDRR 262
Query: 255 IGVNLPILLNAIVAELPPDGSTM---LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVP 311
LP L+N IV P+ +RIGM + + + E+ E V FLH+P
Sbjct: 263 DKYRLPNLINDIVDN--PNSKPFDFGIRIGMMHANYANSFIDELIESYSSEKVIKFLHLP 320
Query: 312 VQSGSDAVL 320
+QSG D VL
Sbjct: 321 IQSGDDNVL 329
>gi|159027937|emb|CAO87100.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 446
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 138/280 (49%), Gaps = 20/280 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L + + L P V H+P QSG + +L ++
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKR 284
>gi|427720831|ref|YP_007068825.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 7507]
gi|427353267|gb|AFY35991.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 7507]
Length = 454
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 22/276 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ AD+ L NTCT++ +Q + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFSEDPNNADLILYNTCTIRDNAQHKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L++AGCV Q G L+ + + +V G Q +R+ +++E L+G++V
Sbjct: 69 AKRKHEQPNLKLILAGCVAQQEGESLLRRVPELDLVMGPQHANRLKDLLESVLEGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ + RR+ V +NV GC CTYC + RG S T ++ +
Sbjct: 129 TEAVHIME-DITQPRRDSSVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPAAIRAEIE 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G KE+ L ++ AYGRD+ G +L L + + G +R ++P
Sbjct: 187 ALGQQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTLTDLLYYIHDVPGIERIRFATSHP 246
Query: 286 PFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ E L K AE+ P V H+P QSG + +L
Sbjct: 247 RYFTERLIKACAEL---PKVCEHFHIPFQSGDNELL 279
>gi|188586093|ref|YP_001917638.1| MiaB-like tRNA modifying enzyme YliG [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|238066413|sp|B2A3C0.1|RIMO_NATTJ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
Short=S12 MTTase; Short=S12 methylthiotransferase;
AltName: Full=Ribosome maturation factor RimO
gi|179350780|gb|ACB85050.1| MiaB-like tRNA modifying enzyme YliG [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 444
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 135/271 (49%), Gaps = 21/271 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTL--IAKC 121
+ GC+ NQ D+E M G L Y +TD+ +ADI ++NTC + + ++D + +A+
Sbjct: 7 SLGCAKNQVDTEVMQGILENSNYKMTDDYYDADIIIVNTCGFIDDAKEESVDHILEVAQL 66
Query: 122 KSAK--KPLVVAGCVPQGSRD-LKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
K K L+VAGC+ Q ++ LKE E +++G D++ EV+ LKG+ + R
Sbjct: 67 KETGKLKVLIVAGCLSQRYQESLKEEIPEIDAMIGTDTQDKITEVISSALKGNYISFYDR 126
Query: 177 KKLPALDLPKVRRNKF----VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L +D R + + I GC C+YC RG S T+E +
Sbjct: 127 --LNKIDEQLFLRQPYQPGPSAYIKIAEGCHNYCSYCAIPLIRGGYRSRTIEDIKIEANH 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
I G KE+ L ++DT YG DI +L LL+ + A +P G +R+ P I +
Sbjct: 185 FIEKGSKELTLIAQDTTNYGSDIYGKFSLDTLLDEL-ATIP--GDFWIRVLYAYPTRITD 241
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
L E+ + RH + S+L +P+Q D +L+
Sbjct: 242 SLIEV--INRHEKICSYLDIPLQHIDDDILT 270
>gi|94264310|ref|ZP_01288103.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
MLMS-1]
gi|93455276|gb|EAT05486.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
MLMS-1]
Length = 446
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 133/286 (46%), Gaps = 36/286 (12%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y++TFGC N+ DSE M L+ Y T EEAD ++NTC+++ + +L+
Sbjct: 4 NLYIETFGCQMNERDSEIMVQLLAHDSYLETSRPEEADCIVVNTCSIRGKAAQKAYSLLG 63
Query: 120 KCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVE-------- 163
KS K+ + V GCV Q G L+++ + +VG Q I R+ E+V
Sbjct: 64 GYKSLKERHPHLVIAVTGCVAQQDGQALLRKMPHLDLVVGPQNIYRLPELVAAARQQAAR 123
Query: 164 ----ETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
E E+ LPA+D V +FV I+ GC CTYC H RG
Sbjct: 124 QVATELSPAFEIPPF----LPAIDPAAVNPRRFVTIMQ---GCNNFCTYCVVPHTRGREI 176
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGS 275
S E +V VR + A GV+EV L ++ +YG D + P LL +V G
Sbjct: 177 SRKPEDIVAEVRHLAAHGVREVTLLGQNVNSYGLDRPAAEKLPFPALLGKVVEVA---GI 233
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+R ++P + E L L C + H+PVQSGSD VL+
Sbjct: 234 DRVRFTTSHPKDLSEELMAAFARLDKLCPH--FHLPVQSGSDRVLA 277
>gi|444352574|ref|YP_007388718.1| tRNA-i(6)A37 methylthiotransferase [Enterobacter aerogenes EA1509E]
gi|443903404|emb|CCG31178.1| tRNA-i(6)A37 methylthiotransferase [Enterobacter aerogenes EA1509E]
Length = 474
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 143/282 (50%), Gaps = 24/282 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L A GY LT+ +EEAD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCK--SAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K KKP V V GCV +G + V I+ G Q + R+ E+++
Sbjct: 62 QLGRWKLLKEKKPGVIIGVGGCVASQEGKLIRQRAHYVDIIFGPQTLHRLPEMIDAVRNN 121
Query: 169 HE-VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
H+ V + ++ D LP+ R + I GC CTYC + RG S + +
Sbjct: 122 HKPVIDVSFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPCDDI 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGA-----YGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
+ + + A GV+EV L ++ A Y G N LL + A DG +R
Sbjct: 182 LFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTG-NFADLLRLVAA---IDGIDRIRFT 237
Query: 282 MTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSV 322
++P +E +I EV R P + SFLH+PVQ+GSD VL++
Sbjct: 238 TSHP---IEFTDDIIEVYRDTPELVSFLHLPVQAGSDRVLNL 276
>gi|425453290|ref|ZP_18833048.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9807]
gi|389801446|emb|CCI19386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9807]
Length = 446
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 138/280 (49%), Gaps = 20/280 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRSEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L + + L P V H+P QSG + +L ++
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKR 284
>gi|323486989|ref|ZP_08092303.1| hypothetical protein HMPREF9474_04054 [Clostridium symbiosum
WAL-14163]
gi|323692033|ref|ZP_08106281.1| MiaB family RNA modification enzyme [Clostridium symbiosum
WAL-14673]
gi|355628131|ref|ZP_09049621.1| ribosomal protein S12 methylthiotransferase rimO [Clostridium sp.
7_3_54FAA]
gi|323399701|gb|EGA92085.1| hypothetical protein HMPREF9474_04054 [Clostridium symbiosum
WAL-14163]
gi|323503956|gb|EGB19770.1| MiaB family RNA modification enzyme [Clostridium symbiosum
WAL-14673]
gi|354819938|gb|EHF04371.1| ribosomal protein S12 methylthiotransferase rimO [Clostridium sp.
7_3_54FAA]
Length = 445
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 132/272 (48%), Gaps = 25/272 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
+ GC N D+E M G L+ G+ TD+ EADI LINTC + + +++T++ +
Sbjct: 7 SLGCDKNLVDTEMMLGLLNKDGHTFTDDENEADIILINTCCFINDAKEESVNTILEMAEY 66
Query: 124 AK----KPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
K + L+V GC+ Q ++ +KE+ V I+G D + V+ + L G + H
Sbjct: 67 KKSGKCRALIVTGCMAQRYKEEIIKEIPEVDGILGTSTYDEISNVLNKALSGEQAVCFH- 125
Query: 177 KKLPALDLPKVRRNKFV------EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
L A LP+V + V L I+ GC CTYC RG S +E L+
Sbjct: 126 -DLSA--LPEVSEKRIVTTGGHYAFLKISEGCNKRCTYCIIPSLRGPYRSVPMERLLTEA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ GVKE+ L +++T YG D+ LP LL + AE+P G LR+ P I
Sbjct: 183 GQLAGQGVKELILVAQETTLYGTDLYGKKMLPELLRRL-AEIP--GIEWLRVQYCYPEEI 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E L ++ + C Y L +P+Q SD +L
Sbjct: 240 TEELVQVIKEEEKVCHY--LDIPIQHASDRIL 269
>gi|229890685|sp|B2VBL4.2|MIAB_ERWT9 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
Length = 474
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 149/291 (51%), Gaps = 36/291 (12%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFA 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ + K K+ + V GCV +G++ + V IV G Q + R+ E++ +++G
Sbjct: 62 LLGRWKKLKESNPDMIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMI-NSVRG 120
Query: 169 H----------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
E+ R P D P FV I+ GC CT+C + RG
Sbjct: 121 TRSPVVDVSFPEIEKFDRMPEPRADGP----TAFVSIME---GCNKYCTFCVVPYTRGEE 173
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGS 275
S + ++ V + A GV+EV L ++ AY D G+ L +VA + DG
Sbjct: 174 VSRPSDDILFEVAQLAAQGVREVNLLGQNVNAYRGETFDGGICSFAELLRLVAAI--DGI 231
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+R ++P +E +I +V R P + SFLH+PVQSG+D +L++ ++
Sbjct: 232 DRIRFTTSHP---IEFNDDIIDVYRDTPELVSFLHLPVQSGADRILTLMKR 279
>gi|406888093|gb|EKD34682.1| hypothetical protein ACD_75C02237G0006 [uncultured bacterium]
Length = 461
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 142/292 (48%), Gaps = 37/292 (12%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++KTFGC N+ DSE MA LS +GY EAD+ ++NTC++++ ++ + +L+
Sbjct: 6 FFIKTFGCQMNERDSEIMAQSLSGYGYIEGMEMNEADLVILNTCSIRAKAEQKVLSLLGY 65
Query: 121 CKSA--KKP---LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLK-GHEV 171
+ K+P + VAGCV Q G+R L + V +VG Q I + +++ K G V
Sbjct: 66 LRKTKLKRPAMKICVAGCVAQQEGNRLLDRMPHVDLVVGTQNIYNIGPLLQRAEKDGSRV 125
Query: 172 RLLHR------KKLPALD-------------LPKVRRNKFVEILPINVGCLGACTYCKTK 212
R K LPA V+ +KFV I+ GC CTYC
Sbjct: 126 VTELRDDYAIPKFLPAFSPMTTDQAGSDRITPSSVQFSKFVTIMQ---GCNNYCTYCVVP 182
Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL---PILLNAIVAE 269
+ RG S V+ ++ V ++ GVKE+ L ++ +YG+ V P + ++ E
Sbjct: 183 YTRGREISRNVDDIIEEVNILVKAGVKEITLLGQNVNSYGKANAVTADRRPYNFSDLLRE 242
Query: 270 LPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ +G LR +NP + + L + +R+ C H+PVQSGS+ +L
Sbjct: 243 VSSVEGLARLRFTTSNPKDLTDALMKSFRDVRNLCPQ--FHLPVQSGSNRIL 292
>gi|188534464|ref|YP_001908261.1| tRNA-thiotransferase [Erwinia tasmaniensis Et1/99]
gi|188029506|emb|CAO97383.1| Putative tRNA-thiotransferase [Erwinia tasmaniensis Et1/99]
Length = 480
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 149/291 (51%), Gaps = 36/291 (12%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 8 TKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFA 67
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ + K K+ + V GCV +G++ + V IV G Q + R+ E++ +++G
Sbjct: 68 LLGRWKKLKESNPDMIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMI-NSVRG 126
Query: 169 H----------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
E+ R P D P FV I+ GC CT+C + RG
Sbjct: 127 TRSPVVDVSFPEIEKFDRMPEPRADGPTA----FVSIME---GCNKYCTFCVVPYTRGEE 179
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGS 275
S + ++ V + A GV+EV L ++ AY D G+ L +VA + DG
Sbjct: 180 VSRPSDDILFEVAQLAAQGVREVNLLGQNVNAYRGETFDGGICSFAELLRLVAAI--DGI 237
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+R ++P +E +I +V R P + SFLH+PVQSG+D +L++ ++
Sbjct: 238 DRIRFTTSHP---IEFNDDIIDVYRDTPELVSFLHLPVQSGADRILTLMKR 285
>gi|332526540|ref|ZP_08402652.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rubrivivax
benzoatilyticus JA2]
gi|332110808|gb|EGJ10985.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rubrivivax
benzoatilyticus JA2]
Length = 444
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 140/281 (49%), Gaps = 23/281 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y++TFGC N+ DS MA L+A G Y TD+ E+AD+ L NTC+V+ +Q + + +
Sbjct: 4 VYIRTFGCQMNEYDSAKMADVLNAAGGYEPTDDPEQADLVLFNTCSVREKAQEKVFSDLG 63
Query: 120 KCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ K KK V V GCV +G+ ++ V +V G Q + R+ +++ + +E R
Sbjct: 64 RVKHLKKKGVLIGVGGCVASQEGAAIIERAPYVDMVFGPQTLHRLPQMI--AARSNERRP 121
Query: 174 LHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
P ++ LP R + I GC CTYC + RG S E ++
Sbjct: 122 QVDISFPEIEKFDHLPPPRIEGASAFVSIMEGCSKYCTYCVVPYTRGEEVSRPFEDVLTE 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTN 284
V + GVKEV L ++ AY +G +L +LL VAE+P G +R ++
Sbjct: 182 VADLADRGVKEVTLLGQNVNAYRGAMGESGEIADLALLLE-YVAEVP--GIERIRFTTSH 238
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
P + L I R P + S LH+PVQ GSD +LS ++
Sbjct: 239 PNEFTQRL--IEAYGRIPKLVSHLHLPVQHGSDRILSAMKR 277
>gi|302670644|ref|YP_003830604.1| MiaB-like tRNA modifying enzyme [Butyrivibrio proteoclasticus B316]
gi|302395117|gb|ADL34022.1| MiaB-like tRNA modifying enzyme [Butyrivibrio proteoclasticus B316]
Length = 451
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 137/279 (49%), Gaps = 23/279 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA 119
I + GC N+ D+E M G L+ G+ TD+ +EA+ ++NTC + + +++T++
Sbjct: 3 ILFVSLGCDKNRVDTEVMLGMLADRGHNFTDDEQEAEAAVVNTCCFINDAKEESINTILE 62
Query: 120 KCKSAK----KPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVR 172
+ K K L+V GC+ Q ++ E+ V I+GV D+++E ++ET++ +++
Sbjct: 63 LAERRKSGQLKALIVTGCLAQRYKEEIQDEIPEVDEILGVSSTDKIIEALDETIERNKL- 121
Query: 173 LLHRKKLPALDLPKVRRNKFV-------EILPINVGCLGACTYCKTKHARGHLGSYTVES 225
H+ ++ + K V L I GC CTYC RG S +E
Sbjct: 122 FSHKNYFDDVNRKPIGGKKRVITTGGLYNYLKIAEGCDKHCTYCIIPKVRGAYRSVPMEQ 181
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
L+ R + GV E+ L +++T YG D+ LP LL+ + DG +RI
Sbjct: 182 LLADARNLAEAGVTELLLVAQETTLYGTDLYGEKKLPELLHKLC---EIDGFKWIRILYC 238
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P I E L I + P + +L +P+QSGSD +L +
Sbjct: 239 YPEEITEEL--IQTIKTEPKICHYLDIPIQSGSDRILKL 275
>gi|282895989|ref|ZP_06304020.1| tRNA-i(6)A37 modification enzyme MiaB [Raphidiopsis brookii D9]
gi|281199099|gb|EFA73969.1| tRNA-i(6)A37 modification enzyme MiaB [Raphidiopsis brookii D9]
Length = 447
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 141/278 (50%), Gaps = 26/278 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++N + A++ + NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSENPQNANLIVYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G L+ + + +V G Q +R+ ++++ G++V
Sbjct: 69 AKRKHQEPDLTLVVAGCVAQQEGQALLRRVPELDLVMGPQYANRLQDLLDSVFAGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ + RR+ V +NV GC CTYC + RG S T E++ G +
Sbjct: 129 TEEVHILE-DITQPRRDSRVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRGEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G +E+ L ++ AYGRD+ G NL + + V ++P G +R +
Sbjct: 187 ILGQQGYREITLLGQNIDAYGRDLPGSTTEGRNLHTFTDLLYYVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+P + E L K AE+ P + H+P QSG + +L
Sbjct: 245 HPRYFTERLIKACAEL---PKICEHFHIPFQSGDNEIL 279
>gi|188589299|ref|YP_001920259.1| hypothetical protein CLH_0864 [Clostridium botulinum E3 str. Alaska
E43]
gi|188499580|gb|ACD52716.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
Length = 434
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 134/266 (50%), Gaps = 15/266 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M + GY++TD + AD+++INTCTV + +I+K +
Sbjct: 7 TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKARRT 66
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLH 175
++A GC Q ++ ++EGV +V G + +V V E+ ++ +L
Sbjct: 67 NSNAIIAVVGCYSQIAPEEVSKIEGVDVVLGTRNKGDIVYFVNKARDEKAIQVSVNEVLK 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + ++K L I GC CT+C +ARG S E ++ V+ +
Sbjct: 127 NKEFEELNIEEY-QDKTRAFLKIQDGCNRFCTFCLIPYARGATCSKKPEKVIEEVKKLAE 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KEV LS T +YG D+G + ++ +++ ++ DG +RIG P F + +
Sbjct: 186 HGFKEVILSGIHTASYGVDLGAGVTLI--SLLEDIEKIDGIDRVRIGSIEPAFFTDEVIN 243
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ ++ C + H+ +QSGSDA L
Sbjct: 244 KIKNMKKLCPH--FHLSLQSGSDATL 267
>gi|317129126|ref|YP_004095408.1| tRNA-i(6)A37 thiotransferase protein MiaB [Bacillus
cellulosilyticus DSM 2522]
gi|315474074|gb|ADU30677.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cellulosilyticus
DSM 2522]
Length = 516
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 148/285 (51%), Gaps = 16/285 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ DSE MAG L G+ T NS++AD+ L+NTC ++ +++ + I K
Sbjct: 77 IRTYGCQMNEHDSENMAGILLNMGFESTSNSDDADVILLNTCAIRENAENKVFGEIGHLK 136
Query: 123 SAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
+ K+ + V GC+ Q +R L++ + V ++ G I R+ +++ + E
Sbjct: 137 TMKRERPELIVGVCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPTLLKNAIFNKEMV 196
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ ++P+ R+ + + I GC CTYC + RG S E ++ V
Sbjct: 197 VEVWSKEGDIIENMPRARKGQIQGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIEEV 256
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + +G KE+ L ++ AYG+D+ V++ L ++ E+ +R ++P +
Sbjct: 257 RHLARNGYKEITLLGQNVNAYGKDL-VDMDYGLGDLMDEIRKIDIPRVRFTTSHPKDFDD 315
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS-VSQKIVPTKSVSL 334
HL E+ + + + +H+PVQSG+ VL +++K + V+L
Sbjct: 316 HLIEV--LAKGGNLVEHIHLPVQSGNSDVLKLMARKYTREEYVTL 358
>gi|225018519|ref|ZP_03707711.1| hypothetical protein CLOSTMETH_02466 [Clostridium methylpentosum
DSM 5476]
gi|224948720|gb|EEG29929.1| hypothetical protein CLOSTMETH_02466 [Clostridium methylpentosum
DSM 5476]
Length = 496
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 136/296 (45%), Gaps = 28/296 (9%)
Query: 40 LHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIW 99
L+++HL KTG +T+GC N +D E + G L GY TD +EAD
Sbjct: 27 LNEDHLRKTGR-------RRLACTRTYGCQANVADGEKIRGILHEIGYEFTDEPDEADFI 79
Query: 100 LINTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----I 149
L NTC V+ ++ + I KK + V GC+ Q ++++ +
Sbjct: 80 LFNTCAVRENAEDRVFGNIGALAHLKKENPNLIIAVCGCMMQQEHIVEKIRKSYPYVGLV 139
Query: 150 VGVQQIDRVVEVVEETLKGHEVRLLHRKK---LPALDLPKVRRNKFVEILPINVGCLGAC 206
G + R+ E+V L H+ R+ + + A DLP VR LPI GC C
Sbjct: 140 FGTHVVHRLPELVYRALTEHK-RVFDSTQSDGVIAEDLPVVREEGSKAWLPIMYGCNNFC 198
Query: 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLN 264
TYC + RG S ++++ R ++ADG KE+ L ++ +YG+++ + LL
Sbjct: 199 TYCIVPYVRGRERSREPDAILREARQLVADGYKEITLLGQNVNSYGKNLPQPIRFSQLLR 258
Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++ ++P G +R ++P L + C + LH+PVQ GSD +L
Sbjct: 259 -MINDIP--GDFRIRFMTSHPKDATRELIDTIADCDKVC--NHLHLPVQCGSDEIL 309
>gi|402837629|ref|ZP_10886146.1| ribosomal protein S12 methylthiotransferase RimO [Eubacteriaceae
bacterium OBRC8]
gi|402274649|gb|EJU23826.1| ribosomal protein S12 methylthiotransferase RimO [Eubacteriaceae
bacterium OBRC8]
Length = 438
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 140/290 (48%), Gaps = 41/290 (14%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTL 117
E +++ GCS N D+E M L+ GY +T + EA I ++NTC ++S + ++DT+
Sbjct: 3 EKFILESLGCSKNLVDAEEMVYILNKNGYEMTGDINEATIAIVNTCGFIESAKEESIDTI 62
Query: 118 --IAKCKSAK-KPLVVAGCVPQGSRDLKEL-----EGVSIVGVQQIDRVVEVVEETLKGH 169
IA+ K K L+V GC+ Q R KEL E + +G D + V+ KG
Sbjct: 63 FEIARYKQENLKYLIVTGCLAQ--RYYKELKEKIPEVDAFLGTTSYDTIYNVI----KGL 116
Query: 170 EV------------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
E+ +L H KK K+ + + + I GC CTYC RG
Sbjct: 117 EIGQDNSLILNADRKLEHTKK-------KILTDNYYAYVKIAEGCDNNCTYCIIPRLRGR 169
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGS 275
S +E ++ V+ + + GVKE+ L ++DT YG DI LP LL + +E+ DG
Sbjct: 170 YKSRGMEEIITEVQDLASQGVKEIILIAQDTSKYGLDIYKEKKLPELLRKL-SEI--DGI 226
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+R T P I E L + EV + V S+ +P+Q +D +L + +
Sbjct: 227 KWIRFLYTYPEDITEEL--VQEVKNNDKVCSYFDIPIQHANDRILKLMNR 274
>gi|172037723|ref|YP_001804224.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
ATCC 51142]
gi|354553405|ref|ZP_08972711.1| RNA modification enzyme, MiaB family [Cyanothece sp. ATCC 51472]
gi|229890507|sp|B1WU96.1|MIAB_CYAA5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|171699177|gb|ACB52158.1| tRNA-i(6)A37 modification enzyme MiaB [Cyanothece sp. ATCC 51142]
gi|353554122|gb|EHC23512.1| RNA modification enzyme, MiaB family [Cyanothece sp. ATCC 51472]
Length = 448
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 135/279 (48%), Gaps = 18/279 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ AD+ L NTCT++ ++ + + + +
Sbjct: 11 HITTFGCQMNKADSERMAGILEDMGFKWSEDPNTADLILYNTCTIRDNAEQKVYSYLGRQ 70
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G + L+ + + +V G Q +R+ +++ + G++V
Sbjct: 71 AKRKHEHPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLQDLLTQVFDGNQVVA 130
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ K RR+ V + I GC C+YC + RG S T E++ +
Sbjct: 131 TEPIHI-VEDITKPRRDSTVTAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYAEMEL 189
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ G KEV L ++ AYGRD+ G + L + + G LR ++P
Sbjct: 190 LGKQGYKEVTLLGQNIDAYGRDLPGVTETGRHQHTLTDLLYQVHDISGIERLRFATSHPR 249
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L + L P V H+P QSG + VL ++
Sbjct: 250 YFTERLIKACHEL--PKVCEHFHIPFQSGDNDVLKAMKR 286
>gi|291550943|emb|CBL27205.1| SSU ribosomal protein S12P methylthiotransferase [Ruminococcus
torques L2-14]
Length = 440
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 133/275 (48%), Gaps = 23/275 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV-----KSPSQSAMD 115
I + GC N D+E M G L++ GY +T++ +EADI +INTC + Q+ ++
Sbjct: 3 ILFISLGCDKNLVDTEVMLGMLASRGYEMTNDEQEADIIVINTCCFIHDAKEESIQNILE 62
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEETLKG-HEV 171
K + K L+V GC+ + R L E+ V ++G DR+++ V+ L G HEV
Sbjct: 63 MAEYKKNGSAKALIVTGCMAERYRQEILDEIPEVDEVLGTTAYDRILDAVDAALAGQHEV 122
Query: 172 RLLHRKKLPALDLPKVRR----NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
L AL LP+ +R L I GC CTYC RG+ S +E L+
Sbjct: 123 ---MTADLDALPLPETKRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGNFRSVPMERLL 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ + GVKE+ L +++T YG+D+ +LP LL + G +RI P
Sbjct: 180 KEAQDLAEQGVKELILVAQETTLYGKDLYGEKSLPKLLRELC---KISGIRWIRILYCYP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
I + L ++ + C Y L +P+Q +D +L
Sbjct: 237 EEITDELIQVMKEESKICHY--LDLPIQHANDTIL 269
>gi|427414218|ref|ZP_18904408.1| MiaB-like tRNA modifying enzyme [Veillonella ratti ACS-216-V-Col6b]
gi|425714594|gb|EKU77597.1| MiaB-like tRNA modifying enzyme [Veillonella ratti ACS-216-V-Col6b]
Length = 433
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 136/277 (49%), Gaps = 14/277 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC NQ D++ M G GY D E+ADI++INTC+V + + LI
Sbjct: 2 KTVAFTTLGCRVNQYDTDAMRGLFIQSGYTPVDFDEKADIYVINTCSVTNMGERKSRQLI 61
Query: 119 AKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE---- 170
K K + ++V GC Q + ++GV++V G RVVE+VE+ L+ E
Sbjct: 62 RKAKRTNEDAYIIVTGCYAQLAPEAIATIDGVNLVIGTNNRHRVVELVEQ-LESTEKQIS 120
Query: 171 -VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
VR ++ + + L +K + I GC CT+C + RG L S VE +V
Sbjct: 121 IVRNIMEQATFEEMPLYGNEIDKARAFMKIQEGCNNYCTFCIIPYTRGKLKSRRVEDIVK 180
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ ++ G E+ L+ G YG ++ + P L + + A L G +R+G +
Sbjct: 181 EAKRLVEHGYHEIVLTGIHLGNYGIEL-LEKPNLAHVVKALLEIPGLERIRLGSIESVEV 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
E L ++ + + P + LH+P+Q+GSD +L + +
Sbjct: 240 SEELVDL--MAKDPRFCTHLHLPLQAGSDHILKLMNR 274
>gi|300868939|ref|ZP_07113544.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Oscillatoria sp. PCC 6506]
gi|300333062|emb|CBN58736.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Oscillatoria sp. PCC 6506]
Length = 452
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 141/279 (50%), Gaps = 28/279 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ EA + L NTC+++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNEASLILYNTCSIRDSAEHKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K+ L+VAGCV Q R + EL+ V +G Q +R+ +++E+ G++V
Sbjct: 69 AGRKRVEPELTLIVAGCVAQQEGEALLRRVPELDLV--MGPQHANRLQDLLEQVFDGNQV 126
Query: 172 RLLHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ D+ K RR+ K + + GC CTYC + RG S T +++ +
Sbjct: 127 VATDAVHIME-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGIEQSRTPKAIRAEM 185
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGM 282
+ G KEV L ++ AYGRD+ G N L + + V+++P G +R
Sbjct: 186 EELGRQGYKEVTLLGQNIDAYGRDLPGTKPDGSNQYTLTDLLYYVSDVP--GIERIRFAT 243
Query: 283 TNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + E L K AE+ P V H+P QSG + +L
Sbjct: 244 SHPRYFTERLIKACAEL---PQVCEHFHIPFQSGDNDIL 279
>gi|425459253|ref|ZP_18838739.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9808]
gi|389823075|emb|CCI29007.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9808]
Length = 446
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 138/280 (49%), Gaps = 20/280 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYVHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L + + L P V H+P QSG + +L ++
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKR 284
>gi|224542096|ref|ZP_03682635.1| hypothetical protein CATMIT_01271 [Catenibacterium mitsuokai DSM
15897]
gi|224525029|gb|EEF94134.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Catenibacterium mitsuokai
DSM 15897]
Length = 483
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 147/305 (48%), Gaps = 23/305 (7%)
Query: 35 KNKPRLHDNHLSKTGSLSPKIPGT---ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD 91
+++ R HL + + G +T Y++T+GC N+ D+E ++G L GY TD
Sbjct: 17 RSRGRTEVQHLDDAFEIPADMVGIGKGQTYYIQTYGCQANERDTETLSGILEMMGYTHTD 76
Query: 92 NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQG----SRDLK 142
++AD+ L+NTC ++ ++ + I K+ KK V GC+ Q ++ L+
Sbjct: 77 EVKQADVVLLNTCAIRENAEEKVFGKIGYLKNIKKTRPNLIFGVCGCMAQEEVVVNKILE 136
Query: 143 ELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPIN 199
+ V ++ G I R+ ++++ + E+ L K + +LP R N + + I
Sbjct: 137 KFPQVDLIFGTHNIHRLPVLLKQAMLEKELVLEVWSKEGDVIENLPSHRANNYKAWVNIM 196
Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GV 257
GC CTYC + RG S +E ++ V + G KE+ L ++ +YG+D+ G
Sbjct: 197 YGCNKFCTYCIVPYTRGKERSRELEEIIKEVEELKNSGYKEITLLGQNVNSYGKDLNNGT 256
Query: 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
+ LL A+ G +R ++P + +I + ++ + +H+PVQSG+D
Sbjct: 257 DFATLLEAVAKT----GIDRIRFTTSHPWDFNADMIDI--IAKYDNIMPSIHLPVQSGND 310
Query: 318 AVLSV 322
VL +
Sbjct: 311 DVLQL 315
>gi|408421752|ref|YP_006763166.1| ribosomal protein S12 methylthiotransferase RimO [Desulfobacula
toluolica Tol2]
gi|405108965|emb|CCK82462.1| RimO: ribosomal protein S12 methylthiotransferase [Desulfobacula
toluolica Tol2]
Length = 442
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 137/275 (49%), Gaps = 19/275 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLI- 118
++++ GCS NQ DSE M G+L A G+++TD+ A + ++NTC + + SQ A+D L+
Sbjct: 3 VFLENLGCSRNQVDSEIMLGKLVAAGHSVTDDPSCARVIIVNTCGFISTASQEAVDVLLE 62
Query: 119 -AKCKSAKK--PLVVAGCVPQGSRDLKEL-----EGVSIVGVQQIDRVVEVVEETLKGHE 170
A K K L+ GC+ Q +D K+L E + +G D++V+VVE +
Sbjct: 63 MATFKQTGKCERLIATGCLAQRYKDDKDLLSTLPEVDAFIGTAACDQIVDVVENK-QTKP 121
Query: 171 VRLLHRKKLPALD---LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ L A P+ K + ++ GC CTYC RG S ++ +
Sbjct: 122 LTLFPDPSTRAFQDSFEPRELITKDYAYIKVSEGCNRTCTYCIIPKLRGIQRSRPLDDIC 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
R ++ GVKE+ L++E+T YGRD+ +L A+ + + D + +R T+P
Sbjct: 182 KEARDLVLRGVKEIILTAENTTDYGRDLEDDTGFEQVLRALASTVEKDHA-WIRFLYTHP 240
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
I + + I V +H + S+ VPVQ S +L
Sbjct: 241 ETITQPI--IQAVKQHKNICSYYDVPVQHASSGIL 273
>gi|293400769|ref|ZP_06644914.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305795|gb|EFE47039.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 479
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 136/274 (49%), Gaps = 18/274 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GC N+ DSE +AG L + ++ E+AD+ L+NTC ++ ++ + I
Sbjct: 46 YLRTYGCQANERDSETLAGILEELMFTPVEHPEQADLILLNTCAIRKNAEDKVLGEIGSL 105
Query: 122 KSAKKP-----LVVAGCVPQGSRD-----LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K+ + GC+ Q D L++ V+++ G + R+ E++ E + GH+
Sbjct: 106 KRLKRSNPDLIFGLCGCMAQ-EEDVVQVLLEKYRHVNLIFGTHNLHRLPELLYEVMVGHK 164
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V +L ++ +LP R K + I GC CTYC + RG S +E ++
Sbjct: 165 RSVEVLSKEGEVIENLPVRRFGKHKAWVNIMYGCDKFCTYCIVPYTRGKERSRAMEDVLQ 224
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + DG KE+ L ++ +YG+D+ + ++ E G +R ++P
Sbjct: 225 EIRQLKQDGYKEITLLGQNVNSYGKDLHIEGG--FAKLLEETAKIGIERIRFTTSHPWDF 282
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + ++ + R + F+H+PVQSG D +L +
Sbjct: 283 SDEMIDV--IARFDNIMPFIHLPVQSGDDEILKI 314
>gi|410729530|ref|ZP_11367607.1| MiaB-like tRNA modifying enzyme [Clostridium sp. Maddingley
MBC34-26]
gi|410595632|gb|EKQ50333.1| MiaB-like tRNA modifying enzyme [Clostridium sp. Maddingley
MBC34-26]
Length = 467
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 138/294 (46%), Gaps = 20/294 (6%)
Query: 42 DNHLSKTGSLSPKIPGTET-----IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEA 96
DN +K LS K P T + T GC N ++E MA + GY +TD + A
Sbjct: 12 DNDKTKLEKLSNKEPAKNTEGKSLVAFATLGCRVNHYETEAMAEKFIREGYEVTDFNNFA 71
Query: 97 DIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GV 152
D+++INTC+V + S +I++ + A K ++A GC Q ++ +EGV +V G
Sbjct: 72 DVYVINTCSVTNMSDKKSRQIISRARRANKNAIIAAVGCYSQVAPEEVSNIEGVDVVLGT 131
Query: 153 QQIDRVVEVVEETLKGHEVRL-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
+ +V V + + +L L K+ L++ + ++K L I GC C
Sbjct: 132 RNKGDIVYYVNKAKDEQKPQLMVGEVLKNKQFEELNIEEY-QDKTRAFLKIQDGCNRFCA 190
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
YC + RG S + ++ ++ + G KE+ LS T +YG D+ N+ ++ ++
Sbjct: 191 YCLIPYTRGTTCSKDPQKVLDEIKKLSEHGFKEIILSGIHTASYGVDLEGNITLI--TLL 248
Query: 268 AELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+ DG +RIG P F + E ++ C H+ +QSG DA L
Sbjct: 249 EEIEKMDGIERVRIGSIEPSFFTNEVIEKMRKMKKLCPQ--FHLSLQSGCDATL 300
>gi|229891230|sp|A6QCD0.2|MIAB_SULNB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
Length = 431
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 133/277 (48%), Gaps = 20/277 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
++++T GC+ N DSE+M +L+ Y LT N EEAD+ +INTC+V+ + + + I
Sbjct: 4 LFIETLGCAMNVRDSEHMIAELNQKEPYELTQNVEEADLIIINTCSVREKPVAKLFSEIG 63
Query: 120 KCKSAKKP---LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
KKP + VAGC G +K V ++G + + ++ EVV+ K H V +
Sbjct: 64 VFNKYKKPGAKIGVAGCTASHLGKDIIKRAPSVDFVIGARNVSKITEVVD---KKHAVEI 120
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ R N F ++ I++GC +CT+C RG S + LV +
Sbjct: 121 DTDYDESTYAFGEYRTNPFKAMVNISIGCDKSCTFCIVPATRGDEISIPSDLLVQEITKA 180
Query: 234 IADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+A G KEV L ++ YGR G ++ LL I + RI T+P +
Sbjct: 181 VATGAKEVMLLGQNVNNYGRRFGATEEKIDFTGLLQKI-----SKIEGLERIRFTSPHPL 235
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
I E +P + +HVP+QSGS ++L V ++
Sbjct: 236 HMDDAFIQEFASNPKICKQIHVPLQSGSTSLLKVMKR 272
>gi|427412608|ref|ZP_18902800.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella ratti
ACS-216-V-Col6b]
gi|425716415|gb|EKU79399.1| ribosomal protein S12 methylthiotransferase RimO [Veillonella ratti
ACS-216-V-Col6b]
Length = 449
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 139/270 (51%), Gaps = 20/270 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
+ GC+ N D+E M G L GY +T+ +EA+I ++NTCT ++ Q +++T++ +
Sbjct: 9 SLGCAKNLVDTEIMLGALKDNGYEITETLDEAEIIIVNTCTFIEKAKQESINTILQMSEY 68
Query: 124 AK----KPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLL-- 174
+ + L+VAGC+ Q ++ E+ E +++G +R++E +E G + ++
Sbjct: 69 KQFGNCRGLIVAGCLSQQYQEELFAEIPEIDALIGTGSWNRIMEAIEAINDGKRICIMDS 128
Query: 175 ----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ +++P + + + I GC CT+C RG S T+ES+V V
Sbjct: 129 ITNIYNERMPRMQTTPT----YSAYVKIAEGCDNGCTFCIIPKVRGAYRSRTIESIVEEV 184
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ A GVKE+ L ++DT +YG D+ P+L + + A + DG R+ P + +
Sbjct: 185 ERLAAMGVKEINLIAQDTTSYGSDLNNGKPMLADLLKALVKVDGIEWYRLLYLYPKYFTD 244
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L + ++ + +++ +P+Q +D +L
Sbjct: 245 ELLNL--IVAESKICNYIDLPLQHINDDIL 272
>gi|358052768|ref|ZP_09146591.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
simiae CCM 7213]
gi|357257741|gb|EHJ07975.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
simiae CCM 7213]
Length = 514
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 134/275 (48%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVLAGILEALGYKATSDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ + ++ +LPKVR + I GC CTYC RG S + ++
Sbjct: 189 AMVIEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+D+ ++ L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDLQ-DMSYGLGDLLQDISKIAIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+H+ ++ + + +H+PVQSG++ VL +
Sbjct: 308 FTDHMIDV--IAEGGNIVPHIHLPVQSGNNKVLKI 340
>gi|434400303|ref|YP_007134307.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Stanieria
cyanosphaera PCC 7437]
gi|428271400|gb|AFZ37341.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Stanieria
cyanosphaera PCC 7437]
Length = 457
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 139/278 (50%), Gaps = 22/278 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DSE MAG L G+ ++ EAD+ L NTCT++ ++ + + + +
Sbjct: 12 TFGCQMNKADSERMAGILEEMGFRWAEDPNEADLVLYNTCTIRDNAEQKVYSYLGRQAKR 71
Query: 125 KKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 72 KHEQPDLTLIVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVATEP 131
Query: 177 KKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ D+ K RR+ V + I GC C+YC + RG S T E++ + +
Sbjct: 132 IHI-VEDITKPRRDSTVTAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIRAEMEELGR 190
Query: 236 DGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPF 287
G KE+ L ++ AYGRD+ G + L + + V ++P G +R ++P +
Sbjct: 191 QGYKEITLLGQNIDAYGRDLPGSTETGRHQHTLTDLLYYVHDIP--GIDRIRFATSHPRY 248
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
E L + + L P V H+P QSG + VL ++
Sbjct: 249 FTERLIKACQEL--PKVCEHFHIPFQSGDNEVLKAMKR 284
>gi|425451699|ref|ZP_18831519.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 7941]
gi|389766860|emb|CCI07600.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 7941]
Length = 446
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 138/280 (49%), Gaps = 20/280 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L + + L P V H+P QSG + +L ++
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKR 284
>gi|406889510|gb|EKD35681.1| hypothetical protein ACD_75C01819G0003 [uncultured bacterium]
Length = 457
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 143/287 (49%), Gaps = 29/287 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y+KTFGC N+ DSE MA LS +GY + +EAD+ ++NTC++++ ++ + +L+
Sbjct: 6 FYIKTFGCQMNERDSEIMAQSLSRYGYIEGMDMKEADLVILNTCSIRAKAEQKVLSLLGY 65
Query: 121 CKSAK--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEE-TLKGHEV 171
+ K +P + VAGCV Q G R ++ + V +V G Q I + ++E +G V
Sbjct: 66 LRKTKLSRPTMKICVAGCVAQQEGVRLIERMPHVDLVIGTQNIYNLGPLLENLDNEGSRV 125
Query: 172 --RLLHRKKLPAL--DLPKVRRN----------KFVEILPINVGCLGACTYCKTKHARGH 217
L +P+ LP R+ ++ + + I GC CTYC + RG
Sbjct: 126 ITTLWDDYDIPSFLPSLPSNTRSESGAQTTSPFQYSKFVTIMQGCNNYCTYCVVPYTRGR 185
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL---PILLNAIVAELPP-D 273
S V+ ++ V+ ++ GVKEV L ++ +YG+ V P + ++ ++ D
Sbjct: 186 EISRNVKDILEEVQILVKAGVKEVTLLGQNVNSYGKTNAVTAAGDPYTFSDLLRDVSNVD 245
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
G LR +NP + + L ++ C H+PVQSGSD +L
Sbjct: 246 GLARLRFTTSNPKDLTDALMRSFRDVKKLCPQ--FHLPVQSGSDRIL 290
>gi|425436058|ref|ZP_18816499.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9432]
gi|389679291|emb|CCH91904.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9432]
Length = 446
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 138/280 (49%), Gaps = 20/280 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L + + L P V H+P QSG + +L ++
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKR 284
>gi|336113897|ref|YP_004568664.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 2-6]
gi|335367327|gb|AEH53278.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 2-6]
Length = 515
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 135/274 (49%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY T+ E+AD+ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTETVEDADVVLLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
K K KP + V GC+ Q ++ L++ V +V G I R+ +++E K
Sbjct: 131 LKPLKTEKPDMLIGVCGCMSQEESVVNKILQKHPHVDMVFGTHNIHRLPYILKEAYMSKA 190
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDVIESLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D +L L ++ +L +R ++P
Sbjct: 251 EVRELAAKGYKEITLLGQNVNAYGKDFD-DLEYGLGDLMDDLRKINIPRIRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS +L +
Sbjct: 310 DDRLIEV--LAKKGNLVEHIHLPVQSGSSEILKI 341
>gi|387771045|ref|ZP_10127217.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pasteurella bettyae CCUG
2042]
gi|386902964|gb|EIJ67785.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pasteurella bettyae CCUG
2042]
Length = 474
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 143/286 (50%), Gaps = 26/286 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S G LT+ EEAD+ L+NTC+++ +Q +
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLESTHGLELTEIPEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K KK + V GCV +G + V I+ G Q + R+ ++ + G
Sbjct: 62 QLGRWKELKKKNPNLLIGVGGCVASQEGEHIRQRAPFVDIIFGPQTLHRLPAMINQIRGG 121
Query: 169 H----EVRLLHRKKLPALDLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+V +K L PK FV I+ GC CTYC + RG S +
Sbjct: 122 QSSVVDVSFPEIEKFDCLPEPKAEGPTAFVSIME---GCNKYCTYCVVPYTRGEEVSRPL 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRI 280
+ ++ + + A GV+EV L ++ AY D G+ L +VA + DG LR
Sbjct: 179 DDVLFEIAQLAAQGVREVNLLGQNVNAYRGPTFDGGICSFAELLRLVAAI--DGIDRLRF 236
Query: 281 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+NP LE +I +V R P + SFLH+PVQ+GSD +L++ ++
Sbjct: 237 TTSNP---LEFTDDIIDVYRDTPELVSFLHLPVQAGSDRILTMMKR 279
>gi|70939683|ref|XP_740353.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56518009|emb|CAH76701.1| hypothetical protein PC000675.01.0 [Plasmodium chabaudi chabaudi]
Length = 500
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 127 PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPALDLP 185
++V GCVPQ D+K E VS+VGV ID++V+ VE + G+ V+ L + KK+ +L+LP
Sbjct: 416 KIIVCGCVPQAENDMKIFENVSLVGVNNIDKIVDAVENVINGYNVKYLKQSKKMTSLNLP 475
Query: 186 KVRRNKFVEILPINVGCLGACTYCK 210
K+R+NKF+EI+ IN GCLG CTYCK
Sbjct: 476 KIRKNKFIEIININNGCLGNCTYCK 500
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP IY K+FGC+HN SDSE+M G LS +G+ N ++ DI ++N+CTVK+PS+ +M
Sbjct: 211 IPENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFQFVKNIDDCDICIVNSCTVKNPSEESM 270
Query: 115 DTLI 118
T+I
Sbjct: 271 KTII 274
>gi|339009465|ref|ZP_08642037.1| ribosomal protein S12 methylthiotransferase RimO [Brevibacillus
laterosporus LMG 15441]
gi|338773943|gb|EGP33474.1| ribosomal protein S12 methylthiotransferase RimO [Brevibacillus
laterosporus LMG 15441]
Length = 447
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 142/285 (49%), Gaps = 23/285 (8%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSP 109
++ K E + + T GC N DS+ MA + GY L DN ++A + ++NTC + +
Sbjct: 1 MTEKTTPREKVAIVTLGCEKNLVDSDMMAHLIDEKGYELVDNPDDATVVIVNTCGFIDAA 60
Query: 110 SQSAMDTLI--AKCKSAKK--PLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVV 162
+ +++ ++ A+ K + K LVVAGC+ Q ++ L E+ V IVG ++ V+
Sbjct: 61 KEESVNKILDMAELKESGKLKSLVVAGCLTQRYKEDLLHEIPEVDGIVGTGDFMSIINVI 120
Query: 163 EETLKGHEVRLLHRKKLPALDLPKVRRNK-----FVEILPINVGCLGACTYCKTKHARGH 217
E+TL G L+ P + +V + K + I GC CT+C RG
Sbjct: 121 EDTLIGKRTSLIGN---PVFNYEQVVKRKVKEGTYTTYTKIAEGCDNNCTFCSIPLMRGK 177
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGS 275
S ++ES+V + G+ E+ L ++D+ YG D+ + LP LLN + +E+ DG
Sbjct: 178 FRSRSIESIVEEATYLATKGIVEISLIAQDSTNYGMDLYGKLMLPELLNRL-SEV--DGI 234
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+R+ P F + L I ++P V ++ +P+Q DA+L
Sbjct: 235 EWVRLHYAYPGFFTDEL--IETFAKNPKVCKYIDMPLQHSEDAIL 277
>gi|428305612|ref|YP_007142437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Crinalium epipsammum PCC
9333]
gi|428247147|gb|AFZ12927.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Crinalium epipsammum PCC
9333]
Length = 458
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 138/279 (49%), Gaps = 28/279 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ A + L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNNAKVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K LVVAGCV Q R + EL+ V +G Q +R+ E++E+ L G++V
Sbjct: 69 AKRKHEEPDLTLVVAGCVAQQEGEALLRRVPELDLV--MGPQHANRLKELLEQVLDGNQV 126
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
++ D+ K RR+ V +NV GC CTYC RG S T E++
Sbjct: 127 VATEPIQI-VEDITKPRRDSTVSAW-VNVIYGCNERCTYCVVPSVRGVEQSRTPEAIRAE 184
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIG 281
+ + G KE+ L ++ AYGRD+ G + L + + V ++P G +R
Sbjct: 185 MEELSHQGYKEITLLGQNIDAYGRDLPGVTKEGRHQHTLTDLLYYVHDVP--GIERIRFA 242
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + E L + L P V H+P QSG + +L
Sbjct: 243 TSHPRYFTERLIQACAEL--PKVCEHFHIPFQSGDNELL 279
>gi|83589922|ref|YP_429931.1| hypothetical protein Moth_1074 [Moorella thermoacetica ATCC 39073]
gi|123752930|sp|Q2RJK1.1|RIMO_MOOTA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
Short=S12 MTTase; Short=S12 methylthiotransferase;
AltName: Full=Ribosome maturation factor RimO
gi|83572836|gb|ABC19388.1| SSU ribosomal protein S12P methylthiotransferase [Moorella
thermoacetica ATCC 39073]
Length = 432
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 131/264 (49%), Gaps = 13/264 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
T GC NQ +SEYM G L + + +A++ +INTC+ + + + A+DT++ ++
Sbjct: 8 TLGCPKNQVESEYMLGILEKNHLEVVSDPRQAEVVIINTCSFITAAREEALDTILELARA 67
Query: 124 AKKP-LVVAGCVPQ--GSRDLKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
A P L+VAGC+ Q S +EL E + +G R+ E++ LKG V + ++
Sbjct: 68 ANHPRLIVAGCLAQQYASELWQELPEAAAFIGPGATGRLPEIINRVLKGERVLDVPGPEM 127
Query: 180 PALDLPK-VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
+LP+ + K L I GC CTYC +G S +E +V ++ A G+
Sbjct: 128 ITGELPRLIEDGKPFAYLKIAEGCNNRCTYCTIPSIKGPYRSRPLEKVVAEAVSLAARGI 187
Query: 239 KEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ L ++DT AYG D LP LL + +G +R+ P I L E+
Sbjct: 188 KELVLVAQDTTAYGLDCYGEYRLPELLRRLAR---IEGIEWVRLLYAYPTRITPELIEV- 243
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVL 320
+ P V +L +P+Q S+ VL
Sbjct: 244 -MATEPGVVPYLDLPLQHASEGVL 266
>gi|307154937|ref|YP_003890321.1| MiaB family RNA modification protein [Cyanothece sp. PCC 7822]
gi|306985165|gb|ADN17046.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822]
Length = 446
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 145/286 (50%), Gaps = 32/286 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY +++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGYQWSEDPNEADLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAK--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K KP L+VAGCV Q G + L+ + + +V G Q + + +++++ GH++
Sbjct: 69 AKRKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQYANLLQDLLKQVEDGHQIVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR V +NV GC C+YC + RG S T +++ +
Sbjct: 129 TEPIHI-VEDITKPRRESRVSAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPQAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G +L L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEITLLGQNIDAYGRDLPGVTATGRHLHTLTDLLYYVNDVP--GIERIRFATS 244
Query: 284 NPPFILEHL----KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+P + E L KE+ +V H H+P QSG + +L ++
Sbjct: 245 HPRYFTERLIVACKELPKVCEH------FHIPFQSGDNQILKAMKR 284
>gi|354569012|ref|ZP_08988172.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Fischerella sp. JSC-11]
gi|353539224|gb|EHC08716.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Fischerella sp. JSC-11]
Length = 454
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 140/279 (50%), Gaps = 28/279 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNQADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K L+VAGCV Q R + EL+ V +G Q +R+ +++++ G++V
Sbjct: 69 AKRKHEQPDLTLIVAGCVAQQEGEALLRRVPELDLV--MGPQHANRLQDLLQQVFDGNQV 126
Query: 172 RLLHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ D+ K RR+ K + + GC CTYC + RG S T E++ +
Sbjct: 127 VATEPIHIIE-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEM 185
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGM 282
+ G KEV L ++ AYGRD+ G + L + + V ++P G +R
Sbjct: 186 EELGRQGYKEVTLLGQNIDAYGRDLPGVTPEGRHQHTLTDLLYYVHDVP--GVERIRFAT 243
Query: 283 TNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + E L + AE+ P V H+P QSG + VL
Sbjct: 244 SHPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVL 279
>gi|294625996|ref|ZP_06704606.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664199|ref|ZP_06729579.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292599666|gb|EFF43793.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292606024|gb|EFF49295.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 484
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 150/286 (52%), Gaps = 27/286 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KT GC N+ DS MA L+A G LTDN EEAD+ L+NTC+++ +Q + + +
Sbjct: 38 LYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSIREKAQEKVFSQLG 97
Query: 120 KCKSAK---KPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K+ K KP++ V GCV +G +K V +V G Q + R+ E++ + +
Sbjct: 98 RWKALKAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGKS 157
Query: 172 RL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
++ + ++ D LP+ R + I GC C++C + RG S E ++
Sbjct: 158 QVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLVE 217
Query: 230 VRTVIADGVKEVWLSSEDT----GAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRI 280
V + A GV+E+ L ++ GAYG D G +L +L+ I A++ +G +R
Sbjct: 218 VAQLAAQGVREINLLGQNVNAYRGAYGADAGDTAQYADLGLLIRTI-AQI--EGIGRIRF 274
Query: 281 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
++P LE + + R P + ++LH+PVQ+GSD +LS ++
Sbjct: 275 TTSHP---LEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKR 317
>gi|429737004|ref|ZP_19270878.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
taxon 138 str. F0429]
gi|429153638|gb|EKX96416.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
taxon 138 str. F0429]
Length = 437
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 128/270 (47%), Gaps = 14/270 (5%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL GY T+ + +ADI LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNIADAERMEGQLQGAGYMRTEETADADIILINTCCVRETAEDKVYGKIGEIKKIK 69
Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 175
+ +AGC+ Q D ++ + V G ++ + ++ E H V +
Sbjct: 70 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIASEHAPVVDVAL 129
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
A +LP R KF +PI GC CTYC + RG S E +V V+ +A
Sbjct: 130 SDSEIAENLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEVVAEVQRAVA 189
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G +EV L ++ +YG+D L +V E+ +G +R ++P I + L E
Sbjct: 190 EGYREVTLLGQNVNSYGKDHKRADFADLLRMVDEV--EGIRRVRFMTSHPKDIGDKLIET 247
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ H C + +H+PVQ GS +L +
Sbjct: 248 IKNGTHICEH--IHLPVQYGSSRILKAMNR 275
>gi|383760090|ref|YP_005439076.1| tRNA-i(6)A37 modification enzyme MiaB [Rubrivivax gelatinosus
IL144]
gi|381380760|dbj|BAL97577.1| tRNA-i(6)A37 modification enzyme MiaB [Rubrivivax gelatinosus
IL144]
Length = 444
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 142/282 (50%), Gaps = 25/282 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y++TFGC N+ DS MA L+A G Y TD+ E+AD+ L NTC+V+ +Q + + +
Sbjct: 4 VYIRTFGCQMNEYDSAKMADVLNAAGGYEPTDDPEQADLVLFNTCSVREKAQEKVFSDLG 63
Query: 120 KCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVE----ETLKGH 169
+ K KK V V GCV +G+ ++ V +V G Q + R+ +++ E
Sbjct: 64 RVKHLKKKGVLIGVGGCVASQEGAAIIERAPYVDMVFGPQTLHRLPQMIAARSAERRPQV 123
Query: 170 EVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
++ +K L P+V + FV I+ GC CTYC + RG S E ++
Sbjct: 124 DISFPEIEKFDHLPPPRVEGASAFVSIME---GCSKYCTYCVVPYTRGEEVSRPFEDVLT 180
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMT 283
V + GVKEV L ++ AY +G +L +LL VAE+P G +R +
Sbjct: 181 EVADLADRGVKEVTLLGQNVNAYRGAMGESGEIADLALLLE-YVAEVP--GIERIRFTTS 237
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+P + L I R P + S LH+PVQ GSD +LS ++
Sbjct: 238 HPNEFTQRL--IEAYGRIPKLVSHLHLPVQHGSDRILSAMKR 277
>gi|284929205|ref|YP_003421727.1| 30S ribosomal protein S12P methylthiotransferase [cyanobacterium
UCYN-A]
gi|284809649|gb|ADB95346.1| SSU ribosomal protein S12P methylthiotransferase [cyanobacterium
UCYN-A]
Length = 439
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 141/277 (50%), Gaps = 32/277 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA 119
I + GC N+ DSE++ G L+A GY+++ N AD ++NTC+ ++ + ++ TL+
Sbjct: 7 IAISHLGCEKNRIDSEHILGLLAAEGYSVSSNENLADYVVVNTCSFIQQAREESVRTLVE 66
Query: 120 KCKSAKKPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
++ KK +++AGC+ Q +D L+EL E V+IVG +V+ V+ G V + +
Sbjct: 67 LAENNKK-IIIAGCMAQHFQDQLLEELPEVVAIVGTGNYQEIVKTVQRVELGERVIDISQ 125
Query: 177 KKLPALD--LPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
K D +P+ R N+ V L I GC CT+C H RG+ S T+ES+V + +
Sbjct: 126 KPTFIADETVPRYRTTNEGVAYLRIAEGCNYRCTFCIIPHLRGNQRSRTIESIVAEAQQL 185
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+GV+E+ + S+ T YG D+ V L LL A +G N P+I H
Sbjct: 186 ANEGVQEIIIVSQITTNYGLDLYGKVKLAELLQA--------------LGKVNVPWIRVH 231
Query: 292 LKE----IAEVLRH----PCVYSFLHVPVQSGSDAVL 320
AEVL+ P V +L +P+Q +L
Sbjct: 232 YAYPTGLTAEVLKAVKEVPNVIPYLDLPLQHSHPKIL 268
>gi|169827222|ref|YP_001697380.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
sphaericus C3-41]
gi|229890559|sp|B1HR59.1|MIAB_LYSSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|168991710|gb|ACA39250.1| UPF0004 protein [Lysinibacillus sphaericus C3-41]
Length = 514
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 18/297 (6%)
Query: 41 HDNHLSKTGSLSPKIPGT---ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEAD 97
D K S+ + G T Y++T+GC N+ D+E MAG GY T+ EEAD
Sbjct: 47 EDVKYHKDFSIDEQFAGMGKDRTFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEIIEEAD 106
Query: 98 IWLINTCTVKSPSQSAM-----DTLIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVS 148
+ L+NTC ++ +++ + L K K+ + + V GC+ Q ++ L+ V
Sbjct: 107 VVLLNTCAIRENAENKVFGELGFLLKYKRKNPEMLIGVCGCMSQEESVVNKILRSYPHVD 166
Query: 149 IV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGA 205
+V G I R+ +++E E V + ++ +LPK R + I GC
Sbjct: 167 MVFGTHNIHRLPNILKEAYMSKEMVVEVWSKEGDVIENLPKKRLGSIKAWVNIMYGCDKF 226
Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265
CTYC + RG S E ++ VR + A G +E+ L ++ AYG+D ++ L
Sbjct: 227 CTYCIVPYTRGKERSRRPEEIIAEVRELAAAGYQEIMLLGQNVNAYGKDFE-DIEYRLGD 285
Query: 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
++ L +R ++P +HL E+ + + + +H+PVQSGS+ +L +
Sbjct: 286 LMDALRKIDIPRIRFTTSHPRDFDDHLIEV--LAKRGNLVEHIHLPVQSGSNDILKI 340
>gi|166367538|ref|YP_001659811.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Microcystis
aeruginosa NIES-843]
gi|425440422|ref|ZP_18820724.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9717]
gi|425463534|ref|ZP_18842864.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9809]
gi|229890619|sp|B0JVM6.1|MIAB_MICAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|166089911|dbj|BAG04619.1| tRNA-i(6)A37 modification enzyme [Microcystis aeruginosa NIES-843]
gi|389719125|emb|CCH96984.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9717]
gi|389831547|emb|CCI25631.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9809]
Length = 446
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 138/280 (49%), Gaps = 20/280 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLIVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYVHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L + + L P V H+P QSG + +L ++
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKR 284
>gi|428200507|ref|YP_007079096.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pleurocapsa sp. PCC 7327]
gi|427977939|gb|AFY75539.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pleurocapsa sp. PCC 7327]
Length = 451
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 139/282 (49%), Gaps = 24/282 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGFVRSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G + L+ + + +V G Q +R+ +++EE G +V
Sbjct: 69 AKRKHEQPNLTLIVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLHDLLEEVFAGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR V +NV GC CTYC RG S T E++ +
Sbjct: 129 TEPVHIME-DITKPRRESAVTAW-VNVIYGCNERCTYCVVPSVRGIEQSRTPEAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ KEV L ++ AYGRD+ G + L + + V ++P G +R +
Sbjct: 187 ELARQDYKEVTLLGQNIDAYGRDLPGVTETGRHQHTLTDLLYYVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+P + E L + + L P V H+P QSG + +L ++
Sbjct: 245 HPRYFTERLIKACQEL--PKVCEHFHIPFQSGDNEILKAMKR 284
>gi|377578140|ref|ZP_09807119.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Escherichia hermannii NBRC 105704]
gi|377540465|dbj|GAB52284.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Escherichia hermannii NBRC 105704]
Length = 474
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 140/288 (48%), Gaps = 36/288 (12%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L A GY LTD +EEAD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEET--- 165
+ + ++ K+ + V GCV +G + V I+ G Q + R+ E++
Sbjct: 62 QLGRWRALKEKNPDLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINRVRGD 121
Query: 166 ------LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+ E+ R P D P FV I+ GC CTYC + RG
Sbjct: 122 RSPVVDISFPEIEKFDRLPEPRADGP----TAFVSIME---GCNKYCTYCVVPYTRGEEV 174
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD----IGVNLPILLNAIVAELPPDGS 275
S + ++ + + A GV+EV L ++ A+ + N LL + A DG
Sbjct: 175 SRPCDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTQGNFADLLRLVAA---IDGI 231
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSV 322
+R ++P +E +I EV R P + SFLH+PVQSGSD VL++
Sbjct: 232 DRIRFTTSHP---IEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNL 276
>gi|346310403|ref|ZP_08852419.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Collinsella tanakaei YIT
12063]
gi|345897693|gb|EGX67604.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Collinsella tanakaei YIT
12063]
Length = 452
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 133/282 (47%), Gaps = 17/282 (6%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
++ I +T +++TFGC N DSE ++G L + G +ADI + TC V+ +
Sbjct: 1 MNSSILSGKTYFIRTFGCQMNLHDSERVSGLLDSLGCLEVGEPSDADIVIFMTCCVREAA 60
Query: 111 QSAMDTLIAKCKS------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEV 161
+ + + CKS ++ + V GC+ Q G L L+ V ++ G I V E+
Sbjct: 61 DTRLYGQCSSCKSLPKSPSGRRVIAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVGEL 120
Query: 162 VEETLKG--HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+ + + H VR + A +P R F +PI GC C+YC + RG
Sbjct: 121 IAQAFEDGDHHVRCEEIEDKGATSMPWHRATTFHSWVPIMTGCNNFCSYCIVPYVRGREK 180
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
S E +V V ++ V+E+ L ++ +YGRDI P + + A + G +R
Sbjct: 181 SRPFEQIVDEVAGLVRSDVREITLLGQNVNSYGRDI-FGKPRFADLLRA-VGETGIERIR 238
Query: 280 IGMTNPPFIL-EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P +L E + +A+V P V LH+ VQSGS VL
Sbjct: 239 FTSSHPKDLLPETINAMADV---PAVMPHLHLAVQSGSTRVL 277
>gi|254362260|ref|ZP_04978374.1| 2-methylthioadenine synthase [Mannheimia haemolytica PHL213]
gi|261496732|ref|ZP_05993107.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|153093835|gb|EDN74770.1| 2-methylthioadenine synthase [Mannheimia haemolytica PHL213]
gi|261307571|gb|EEY08899.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 475
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 144/283 (50%), Gaps = 26/283 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+++ T+GC N+ DS MA L S G+ LT+N E+AD+ L+NTC+++ +Q + + +
Sbjct: 4 LHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLLLNTCSIREKAQEKVFSQLG 63
Query: 120 KCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH-- 169
+ K+ KK + V GCV +G V IV G Q + R+ E++ + G
Sbjct: 64 RWKNWKKDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVFGPQTLHRLPEMINQIRGGKSS 123
Query: 170 --EVRLLHRKKLPALDLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
++ +K L PK FV I+ GC C++C + RG S V+ +
Sbjct: 124 IVDISFPEIEKFDRLPEPKAEGPTAFVSIME---GCNKYCSFCVVPYTRGEEVSRPVDDV 180
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + + A GV+EV L ++ AY D G+ L +VA + DG LR +
Sbjct: 181 LFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAI--DGIDRLRYTTS 238
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+P +E +I EV R P + SFLH+P+QSGSD VL++ ++
Sbjct: 239 HP---IEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMMKR 278
>gi|146297144|ref|YP_001180915.1| MiaB-like tRNA modifying protein YliG [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|238065313|sp|A4XLD9.1|RIMO_CALS8 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
Short=S12 MTTase; Short=S12 methylthiotransferase;
AltName: Full=Ribosome maturation factor RimO
gi|145410720|gb|ABP67724.1| MiaB-like tRNA modifying enzyme YliG [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 440
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 143/274 (52%), Gaps = 18/274 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLI--AKC 121
+ GC+ N DSE M G G+ +T N+E+AD+ +INTC + Q ++DT++ A+
Sbjct: 8 SLGCNKNLVDSEIMMGACKEAGFEITPNAEDADVIVINTCGFINDAKQESIDTILEMAEY 67
Query: 122 KSAK-KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K+ K K L+V GC+ Q +D LKEL V +I+GV+++ ++ V+++ +G E +L
Sbjct: 68 KNKKCKFLIVTGCLSQRYKDDILKELPEVDAILGVKEMLKLPNVIKKLYEG-ESKLQVFD 126
Query: 178 KLPAL----DLPK-VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
P +P+ + KF + I GC C+YC RG+ S ++ ++ R
Sbjct: 127 DKPTFVYTSSMPRLIATPKFYAYIKIAEGCNNRCSYCSIPLIRGNYTSRYIDDIIQEARK 186
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEH 291
+ DG KE+ L+++DT YG DI +L ++ +L D +R + P I +
Sbjct: 187 LSEDGYKEIVLTAQDTTKYGIDIYQKK--MLATLLQKLSEIDNIKWIRFLYSYPEDIDDE 244
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L I + L P V + +P+Q ++ +L + +
Sbjct: 245 LLNIVKSL--PKVVKYFDIPIQHINNRILKLMNR 276
>gi|261492918|ref|ZP_05989464.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261311459|gb|EEY12616.1| 2-methylthioadenine synthase [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 475
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 144/283 (50%), Gaps = 26/283 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+++ T+GC N+ DS MA L S G+ LT+N E+AD+ L+NTC+++ +Q + + +
Sbjct: 4 LHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLLLNTCSIREKAQEKVFSQLG 63
Query: 120 KCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH-- 169
+ K+ KK + V GCV +G V IV G Q + R+ E++ + G
Sbjct: 64 RWKNWKKDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVFGPQTLHRLPEMINQIRGGKSS 123
Query: 170 --EVRLLHRKKLPALDLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
++ +K L PK FV I+ GC C++C + RG S V+ +
Sbjct: 124 IVDISFPEIEKFDRLPEPKAEGPTAFVSIME---GCNKYCSFCVVPYTRGEEVSRPVDDV 180
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + + A GV+EV L ++ AY D G+ L +VA + DG LR +
Sbjct: 181 LFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFAELLRLVAAI--DGIDRLRYTTS 238
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+P +E +I EV R P + SFLH+P+QSGSD VL++ ++
Sbjct: 239 HP---IEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMMKR 278
>gi|122879210|ref|YP_201405.6| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
oryzae pv. oryzae KACC 10331]
gi|229891224|sp|Q5GZ51.2|MIAB_XANOR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
Length = 484
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 150/286 (52%), Gaps = 27/286 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KT GC N+ DS MA L+A G LTDN EEAD+ L+NTC+++ +Q + + +
Sbjct: 38 LYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSIREKAQEKVFSQLG 97
Query: 120 KCKSAK---KPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K+ K KP++ V GCV +G +K V +V G Q + R+ E++ + +
Sbjct: 98 RWKALKAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGKS 157
Query: 172 RL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
++ + ++ D LP+ R + I GC C++C + RG S E ++
Sbjct: 158 QVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLVE 217
Query: 230 VRTVIADGVKEVWLSSEDT----GAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRI 280
V + A GV+E+ L ++ GAYG D G +L +L+ I A++ +G +R
Sbjct: 218 VAQLAAQGVREINLLGQNVNAYRGAYGADAGDPAQYADLGLLIRTI-AQI--EGIGRIRF 274
Query: 281 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
++P LE + + R P + ++LH+PVQ+GSD +LS ++
Sbjct: 275 TTSHP---LEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKR 317
>gi|58426983|gb|AAW76020.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC
10331]
Length = 550
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 150/286 (52%), Gaps = 27/286 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KT GC N+ DS MA L+A G LTDN EEAD+ L+NTC+++ +Q + + +
Sbjct: 104 LYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEEADVVLVNTCSIREKAQEKVFSQLG 163
Query: 120 KCKSAK---KPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K+ K KP++ V GCV +G +K V +V G Q + R+ E++ + +
Sbjct: 164 RWKALKAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGKS 223
Query: 172 RL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
++ + ++ D LP+ R + I GC C++C + RG S E ++
Sbjct: 224 QVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLVE 283
Query: 230 VRTVIADGVKEVWLSSEDT----GAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRI 280
V + A GV+E+ L ++ GAYG D G +L +L+ I A++ +G +R
Sbjct: 284 VAQLAAQGVREINLLGQNVNAYRGAYGADAGDPAQYADLGLLIRTI-AQI--EGIGRIRF 340
Query: 281 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
++P LE + + R P + ++LH+PVQ+GSD +LS ++
Sbjct: 341 TTSHP---LEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKR 383
>gi|386714414|ref|YP_006180737.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halobacillus halophilus
DSM 2266]
gi|384073970|emb|CCG45463.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halobacillus halophilus
DSM 2266]
Length = 523
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 138/274 (50%), Gaps = 17/274 (6%)
Query: 62 YM-KTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
YM +T+GC N+ D+E MAG GY T +++EADI L+NTC ++ +++ + I
Sbjct: 83 YMIRTYGCQMNEHDTEVMAGIFEEMGYESTSDTKEADIILLNTCAIRENAENKVFGEIGH 142
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K + V GC+ Q +R LK+ + ++ G I R+ ++V+E + G E
Sbjct: 143 LKPLKMENPNLIIGVCGCMSQEESVVNRILKKHPFIDLIFGTHNIHRLPQLVKEAMFGKE 202
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ K + I GC CTYC + RG S ++
Sbjct: 203 MVIDVWSKEGDIIENLPRSRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRLPADIIQ 262
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KEV L ++ AYG+D+ +L L ++ EL +R ++P
Sbjct: 263 EVRHLAAQGYKEVTLLGQNVNAYGKDL--DLEYGLGDLMDELRSIDIPRVRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSG+ VL +
Sbjct: 321 DDRLIEV--LSKGGNMLDHIHLPVQSGNTDVLKI 352
>gi|57242028|ref|ZP_00369968.1| MiaB-like tRNA modifying enzyme [Campylobacter upsaliensis RM3195]
gi|57017220|gb|EAL54001.1| MiaB-like tRNA modifying enzyme [Campylobacter upsaliensis RM3195]
Length = 413
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 128/272 (47%), Gaps = 13/272 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I++KTFGC N DSE + G + F LT+N +EADI LIN+CTV + + S + T I
Sbjct: 4 IFLKTFGCRTNIYDSELIKGYIKDF--ELTNNEKEADIVLINSCTVTNGADSGLKTYINS 61
Query: 121 CKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K +++ GC V +G L ++G ++ E ++E + +E+ L+
Sbjct: 62 LKKNNIKVILTGCAAVSKGKELLDNGAIFGVLGASNKAKINEFLKEKKRFYELGNLN--- 118
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
D+ K N + I GC C+YC RG S L+ +++ +I +G
Sbjct: 119 FIDKDIVKDYENHTKAFVKIQEGCDFNCSYCIIPSVRGRSRSVKESDLLEQIKILIQNGY 178
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ L+ + G+YG G L LL + + G +R+G P I E E+
Sbjct: 179 TEIVLTGTNIGSYGLKDGTTLGKLLQKM---MQISGLKRIRLGSLEPAQIDESF---MEI 232
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTK 330
L + LH+ +Q S+ +L + ++ TK
Sbjct: 233 LDEKLLERHLHIALQHTSETMLRIMRRRSHTK 264
>gi|160945078|ref|ZP_02092304.1| hypothetical protein FAEPRAM212_02597 [Faecalibacterium prausnitzii
M21/2]
gi|158442809|gb|EDP19814.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Faecalibacterium
prausnitzii M21/2]
Length = 463
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 135/274 (49%), Gaps = 19/274 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ ++GC N +D E + G L GY L D E+AD+ L NTC V+ ++ + +
Sbjct: 30 FVHSYGCQQNVNDGERIKGVLVDIGYGLCDKPEDADLILFNTCAVREHAEQRVFGNVGAL 89
Query: 122 K--SAKKPLVV---AGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEV 171
K KKP ++ GC+ +++L + GV ID + +++ + L+ H+
Sbjct: 90 KGLKEKKPGLIIGLCGCMANQKHVVEKLRKSYPYVDLVFGVDGIDTLPQLIAQKLQKHKR 149
Query: 172 RLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
LL + P + ++P R ++F LPI GC CTYC + RG S ++
Sbjct: 150 VLLDPAQRPVIVENIPIRRESEFRAWLPIMYGCDNFCTYCIVPYVRGREKSRKPGDILAE 209
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R+++ G KE+ L ++ +YG+ + ++ LLN ++ +P G +R MT+ P
Sbjct: 210 FRSLVEAGYKEITLLGQNVNSYGKGLEEQIDFSDLLN-LLCTVP--GDYHIRF-MTSHPK 265
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
H K I + P + LH+PVQ GSD +L
Sbjct: 266 DASH-KLIDTIAAQPKLCKHLHLPVQCGSDRLLQ 298
>gi|428216689|ref|YP_007101154.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena sp. PCC
7367]
gi|427988471|gb|AFY68726.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena sp. PCC
7367]
Length = 475
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 135/282 (47%), Gaps = 26/282 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ ++ TFGC N++DSE MAG L GY TD++ +AD+ L NTC+++ ++ + + +
Sbjct: 33 QKYHIVTFGCQMNKADSERMAGVLENIGYRATDDANDADLVLYNTCSIRDNAEQKVYSYL 92
Query: 119 AKCKSAKKP-----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKG 168
+ K LVVAGCV Q R + EL+ V +G Q ++R+ +++ + G
Sbjct: 93 GRQAKRKHSNPGLTLVVAGCVAQQEGEALMRRVPELDLV--MGPQHVNRLDDLLAQVYAG 150
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESL 226
++V + + D+ K RR+ + +NV GC +CTYC RG S T ++
Sbjct: 151 NQVVAIEEAFIEE-DITKPRRSSTITAW-VNVIYGCNESCTYCIVPSVRGQEQSRTPAAI 208
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELPPDGSTML 278
+ + A G KE+ L ++ AYGRD+ L + + +G +
Sbjct: 209 RAEIEALAAQGYKEITLLGQNIDAYGRDLPPGGIGAGIGGKITLTDLLYYVHDVEGIERI 268
Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
R ++P + L I P + H+P QSG + +L
Sbjct: 269 RFATSHPRYFSSRL--IHACAELPKLCEHFHIPFQSGDNELL 308
>gi|284048079|ref|YP_003398418.1| MiaB family RNA modification protein [Acidaminococcus fermentans
DSM 20731]
gi|283952300|gb|ADB47103.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
DSM 20731]
Length = 437
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 136/275 (49%), Gaps = 19/275 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I T GC NQSD+ M G+ + D E ADI LINTC V + QS +I +
Sbjct: 4 IAFYTLGCKVNQSDTASMEKLFRDAGFQIVDFEEPADICLINTCVVTNMGQSKSRKIIHR 63
Query: 121 C-KSAKKPL-VVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETL----KGHEVR 172
+ KPL VV GC PQ S D + ++GV I+G Q +VVE+V E L +
Sbjct: 64 AARRDPKPLIVVTGCYPQTSPDEVVHIDGVDLIIGNQDRSKVVELVRERLGESPDEAPIN 123
Query: 173 LLHR----KKLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+H ++ LD RN+ L I GC C YC +ARGHL S +++++
Sbjct: 124 AVHDLPVGREFEELDAAVDASRNR--AFLKIQEGCDQYCAYCIIPYARGHLRSRSLDNIR 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST-MLRIGMTNPP 286
V + A+ KE+ L G YG++I P L +A+ A L + LR+G
Sbjct: 182 EEVAKLTAEQYKEIVLIGIHLGCYGKEIPGG-PHLSDAVKAALSAEPQVPRLRLGSLESV 240
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ + L ++ + R P + + LH+P+Q+G D+ L+
Sbjct: 241 EVEDALLDL--MAREPRLCAHLHLPLQAGCDSTLA 273
>gi|401564532|ref|ZP_10805419.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. FOBRC6]
gi|400188742|gb|EJO22884.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. FOBRC6]
Length = 437
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 133/272 (48%), Gaps = 18/272 (6%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL GY T+ + +ADI LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNIADAERMEGQLQGAGYMRTEETADADIILINTCCVRETAEDKVYGKIGEIKKIK 69
Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV----GVQQIDRVV-EVVEETLKGHEVRL 173
+ +AGC+ Q D ++ + V VQ++ R++ E+ E +V L
Sbjct: 70 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIAAEHTSVVDVAL 129
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ A +LP R KF +PI GC CTYC + RG S + E +V V+
Sbjct: 130 SDSE--IAENLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRSPEEVVAEVQRA 187
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+A+G +EV L ++ +YG+D L +V E+ +G +R ++P I + L
Sbjct: 188 VAEGYREVTLLGQNVNSYGKDHKAADFADLLRMVDEV--EGIRRVRFMTSHPKDIGDKLI 245
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ + H C + +H+PVQ GS +L +
Sbjct: 246 DTIKNGTHICEH--IHLPVQYGSSRILKAMNR 275
>gi|294637486|ref|ZP_06715772.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Edwardsiella tarda ATCC
23685]
gi|451966050|ref|ZP_21919305.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Edwardsiella tarda NBRC 105688]
gi|291089318|gb|EFE21879.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Edwardsiella tarda ATCC
23685]
gi|451315299|dbj|GAC64667.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Edwardsiella tarda NBRC 105688]
Length = 474
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 143/283 (50%), Gaps = 20/283 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S G LTDN+E+AD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLGSTHGLELTDNAEDADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAK---CKSAKKPLV--VAGCVP-QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKG 168
+ + K AK L+ V GCV Q ++E I G Q + R+ E++E
Sbjct: 62 QLGRWKMLKEAKPDLIIGVGGCVASQEGEHIRERASFVDIIFGPQTLHRLPEMIERARGS 121
Query: 169 HE-VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
H V + ++ D LP+ R + I GC CTYC + RG S + +
Sbjct: 122 HSPVVDVSFPEIEKFDRLPEPRAEGATAFVSIMEGCNKYCTYCVVPYTRGAEVSRPCDDV 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + + A GV+EV L ++ AY D G+ L +VA + DG +R +
Sbjct: 182 LFEIAQLAAQGVREVNLLGQNVNAYRGATFDGGICTFAELLRLVAAI--DGIDRIRFTTS 239
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+P +E +I V P + SFLH+PVQSGSD +L++ ++
Sbjct: 240 HP---IEFSDDIIAVYEDTPELVSFLHLPVQSGSDRILNLMKR 279
>gi|425454119|ref|ZP_18833866.1| Ribosomal protein S12 methylthiotransferase rimO [Microcystis
aeruginosa PCC 9807]
gi|389805291|emb|CCI14996.1| Ribosomal protein S12 methylthiotransferase rimO [Microcystis
aeruginosa PCC 9807]
Length = 437
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 142/280 (50%), Gaps = 26/280 (9%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI + GC N+ DSE+M G L+ GY + ++ E AD ++NTC+ +++ + ++ TL+
Sbjct: 6 TIAISHLGCEKNRIDSEHMLGLLAKAGYPVDNDEELADYVIVNTCSFIQAAREESVRTLV 65
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
+ A K ++++GC+ Q +D L EL E V+IVG ++VE+VE G V+ +
Sbjct: 66 -ELAEANKKIIISGCMAQHFQDELLTELPEAVAIVGTGDYQKIVEIVERVETGERVKEVS 124
Query: 176 RKKLPALD--LPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
D LP+ R ++ V L + GC C +C H RG S ++ES+V R
Sbjct: 125 ANPTFIADENLPRYRTTSEGVAYLRVAEGCDYRCAFCIIPHLRGDQRSRSIESIVAEARQ 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIV-AELPPDGSTMLRIGMTNP---- 285
+ + GV+E+ L S+ T YG D+ L LL A+ ++P +R+ P
Sbjct: 185 LASQGVQELILISQITTNYGLDLYGEPKLAELLRALAEVDIP-----WIRVHYAYPTGLT 239
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
P ++E ++E P V +L +P+Q +L +
Sbjct: 240 PKVIEAIRE------SPNVLPYLDLPLQHSHPDILRAMNR 273
>gi|257439844|ref|ZP_05615599.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium
prausnitzii A2-165]
gi|257197753|gb|EEU96037.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Faecalibacterium
prausnitzii A2-165]
Length = 460
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 19/274 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ ++GC N +D E + G L GY L D E+AD+ L NTC V+ ++ + +
Sbjct: 27 FVHSYGCQQNVNDGERIKGVLVDIGYGLCDKPEDADLILFNTCAVREHAEQRVFGNVGAL 86
Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEV 171
K K+ + + GC+ +++L + GV ID + +++ + L+ H+
Sbjct: 87 KGLKEKKRGLMIGLCGCMANQKHVVEKLRKSYPYVDLVFGVDGIDTLPQLIAQKLQKHKR 146
Query: 172 RLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
L+ + P + ++P R ++F LPI GC CTYC + RG S ++
Sbjct: 147 VLMEPAQRPVIVENIPIRRESEFRAWLPIMYGCDNFCTYCIVPYVRGREKSRKPGDILAE 206
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R ++ G KE+ L ++ +YG+ + V+ LLN + A +P G +R MT+ P
Sbjct: 207 FRGLVEAGYKEITLLGQNVNSYGKGLEEQVDFADLLNLLCA-VP--GDYQIRF-MTSHPK 262
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
H K I + P + LH+PVQ GSD +L
Sbjct: 263 DASH-KLIDTIAAQPHLCKHLHLPVQCGSDELLK 295
>gi|315638251|ref|ZP_07893433.1| 2-methylthioadenine synthetase [Campylobacter upsaliensis JV21]
gi|315481787|gb|EFU72409.1| 2-methylthioadenine synthetase [Campylobacter upsaliensis JV21]
Length = 413
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 128/272 (47%), Gaps = 13/272 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I++KTFGC N DSE + G + F LT+N +EADI LIN+CTV + + S + T I
Sbjct: 4 IFLKTFGCRTNIYDSELIKGYIKDF--ELTNNEKEADIVLINSCTVTNGADSGLKTYINS 61
Query: 121 CKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K +++ GC V +G L ++G ++ E ++E + +E+ L+
Sbjct: 62 LKKNNIKVILTGCAAVSKGKELLDNGAIFGVLGASNKAKINEFLKEKKRFYELGNLN--- 118
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
D+ K N + I GC C+YC RG S L+ +++ +I +G
Sbjct: 119 FIDKDIVKDYENHTKAFVKIQEGCDFNCSYCIIPSVRGRSRSVKESDLLEQIKILIQNGY 178
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ L+ + G+YG G L LL + + G +R+G P I E E+
Sbjct: 179 TEIVLTGTNIGSYGLKDGTTLGKLLQKM---MQISGLKRIRLGSLEPAQIDESF---MEI 232
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTK 330
L + LH+ +Q S+ +L + ++ TK
Sbjct: 233 LDEKLLERHLHIALQHTSETMLRIMRRRSHTK 264
>gi|24372764|ref|NP_716806.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Shewanella oneidensis MR-1]
gi|81446317|sp|Q8CX45.1|MIAB_SHEON RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|24346842|gb|AAN54251.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Shewanella oneidensis MR-1]
Length = 474
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 148/283 (52%), Gaps = 20/283 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KT+GC N+ DS MA L + GY LT+ +EEADI L+NTC+++ +Q +
Sbjct: 2 SKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP-QGSRDLKE-LEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K+ K + V GCV Q + +K+ + V I+ G Q + R+ E++E+ +G
Sbjct: 62 QLGRWKTLKDKNPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIEQVRRG 121
Query: 169 HEVRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+ + + ++ D LP+ R + I GC C++C + RG S + +
Sbjct: 122 EKAVIDVSFPEIEKFDRLPEPRAEGPTAFVSIMEGCSKYCSFCVVPYTRGEEVSRPSDDI 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + + GV+EV L ++ AY D G+ L VA + DG +R +
Sbjct: 182 ILEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICTFAELLRYVAAI--DGIDRIRFTTS 239
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+P +E ++I +V P + SFLH+PVQSGSD +L+ ++
Sbjct: 240 HP---IEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAMKR 279
>gi|427406487|ref|ZP_18896692.1| MiaB-like tRNA modifying enzyme [Selenomonas sp. F0473]
gi|425707917|gb|EKU70958.1| MiaB-like tRNA modifying enzyme [Selenomonas sp. F0473]
Length = 434
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 136/287 (47%), Gaps = 22/287 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ T GC NQ ++E M G A GY + E AD++++NTC+V S LI +
Sbjct: 4 VAFMTLGCKVNQFETETMEGLFRARGYEVVPFEERADVYVVNTCSVTHLSDRKSRQLIRR 63
Query: 121 CKSA--KKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE------ 170
+ + V GC Q +++ LEGV +V G ++ ++V+ VEE L+ +
Sbjct: 64 AARTNPRACIAVCGCYAQVAPEEIRALEGVRVVIGTKERAQIVDYVEEALRAEDHVAGRI 123
Query: 171 ---VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + +P +P R L I GC CT+C +ARG + S T+ ++
Sbjct: 124 TDIMQARTFEDIPLAYMPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRTLPAVR 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
++A G +E+ L+ GAYG D+ P L +A L G LR+
Sbjct: 180 RETERLVAAGFREIVLTGIHLGAYGIDLA-ERPTLADACRTALSLPGLGRLRLSSLES-- 236
Query: 288 ILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVS 333
+E ++ E++R P + LH+P+Q+GSD VL+ + T + +
Sbjct: 237 -VELSADLLELIRTEPRFAAHLHLPLQAGSDGVLAAMNRHYDTAAFA 282
>gi|429736625|ref|ZP_19270517.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 138
str. F0429]
gi|429154646|gb|EKX97368.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 138
str. F0429]
Length = 439
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 136/293 (46%), Gaps = 27/293 (9%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
G +M T GC NQ ++E M G A GY + E A++++INTC+V S
Sbjct: 7 GLRAAFM-TLGCKVNQFETETMEGLFRARGYEVVPFEERAEVYVINTCSVTHLSDRKSRQ 65
Query: 117 LIAKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 169
LI + + V GC Q +++ LEGV +V G ++ R+V+ VEE L+
Sbjct: 66 LIRRAARTNPSACIAVTGCYAQVAPEEIRALEGVRVVIGTKERARIVDYVEEALRADTGA 125
Query: 170 --------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ R+ + +P LP R L I GC CT+C +ARG + S
Sbjct: 126 IGTITDIMQARVF--EDIPLHSLPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSR 179
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
+ ++ ++ + G EV L+ GAYG D+ + P L +A L + LR+G
Sbjct: 180 ELSAVAREMKLLTEAGFHEVVLTGIHLGAYGIDLR-DRPTLADACRTALAEEDLRRLRLG 238
Query: 282 MTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVS 333
+E E+ E++R P + LH+P+Q+GSD VL + T + +
Sbjct: 239 SLES---VELSAELLELMRTEPRFAAHLHLPLQAGSDNVLRAMNRHYDTAAFA 288
>gi|428223576|ref|YP_007107673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geitlerinema sp. PCC
7407]
gi|427983477|gb|AFY64621.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geitlerinema sp. PCC
7407]
Length = 450
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 137/280 (48%), Gaps = 30/280 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +A + L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGFEFSEDPNDASVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K L+VAGCV Q R + EL+ V +G Q +R+ +++E+ G++V
Sbjct: 69 ARRKHDDPNLTLIVAGCVAQQEGEALLRRVPELDLV--MGPQHANRLKDLLEQVFDGNQV 126
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
++ D+ K RR+ V +NV GC CTYC RG S T E++
Sbjct: 127 VATEPIQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPGVRGLEQSRTPEAIRAE 184
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIG 281
+ + G KEV L ++ AYGRD+ P L V ++P G +R
Sbjct: 185 MEALSRQGYKEVTLLGQNIDAYGRDLPGATPEGRHQHTLTDLLYFVHDVP--GIERIRFA 242
Query: 282 MTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + E L + AE+ P V H+P QSG + VL
Sbjct: 243 TSHPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDVL 279
>gi|427405800|ref|ZP_18896005.1| ribosomal protein S12 methylthiotransferase RimO [Selenomonas sp.
F0473]
gi|425708641|gb|EKU71680.1| ribosomal protein S12 methylthiotransferase RimO [Selenomonas sp.
F0473]
Length = 442
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 135/270 (50%), Gaps = 21/270 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA---- 119
+ GC+ N D+E M G + G +T+ EADI ++NTC ++S + ++ T++
Sbjct: 7 SLGCAKNLVDTEVMLGIMREHGIEITNEPAEADILIVNTCAFIRSAKEESITTVLGMADY 66
Query: 120 ----KCKSAKKPLVVAGCVPQ--GSRDLKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+C+S L+VAGC+ Q G + L E+ E +I+G R++EVVEETLKG +
Sbjct: 67 KETGRCRS----LIVAGCLGQRYGQQLLDEIPEANAIIGTGAWSRIMEVVEETLKGRRLV 122
Query: 173 LL-HRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + + P++R + + I GC C +C RG S +E +V
Sbjct: 123 IAGEDDTIYDANTPRLRTTPNYTAYVKIAEGCDHRCAFCAIPLIRGGFRSRAMEDIVSEA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + GV+E+ L ++D+ YG D+ + P+L + + + +R+ + P + +
Sbjct: 183 RELAESGVRELVLIAQDSANYGLDV-YHKPMLAELLRKLARIEKISWIRVLYSYPKYFSD 241
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L E+ P V ++ +P+Q DAVL
Sbjct: 242 ELIEV--FATEPKVVKYVDLPLQHAHDAVL 269
>gi|289665632|ref|ZP_06487213.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
campestris pv. vasculorum NCPPB 702]
Length = 484
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 149/293 (50%), Gaps = 41/293 (13%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KT GC N+ DS MA L+A G LTDN E+AD+ L+NTC+++ +Q + + +
Sbjct: 38 LYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEKVFSQLG 97
Query: 120 KCKSAK---KPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVV---EETLKG 168
+ K+ K KP++ V GCV +G +K V +V G Q + R+ E++ E+ K
Sbjct: 98 RWKALKAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGKS 157
Query: 169 H------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
E+ R P D P + FV I+ GC C++C + RG S
Sbjct: 158 QVDISFPEIEKFDRLPEPRADGP----SAFVSIME---GCSKYCSFCVVPYTRGEEVSRP 210
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDT----GAYGRDIG-----VNLPILLNAIVAELPPD 273
E ++ V + A GV+E+ L ++ G YG D G +L +L+ I A++ D
Sbjct: 211 FEDVLVEVAQLAAQGVREINLLGQNVNAYRGGYGADAGDAAQYADLGLLIRTI-AQI--D 267
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
G +R ++P LE + + R P + ++LH+PVQ+GSD +LS ++
Sbjct: 268 GIGRIRFTTSHP---LEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKR 317
>gi|67922391|ref|ZP_00515902.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
enzyme MiaB [Crocosphaera watsonii WH 8501]
gi|67855735|gb|EAM50983.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
enzyme MiaB [Crocosphaera watsonii WH 8501]
Length = 452
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 22/281 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ + + AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFKWSQDPNGADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 --KSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ K P LVVAGCV Q G + L+ + + +V G Q +R+ +++ + G++V
Sbjct: 69 AKRKHKNPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLEDLLTQVFDGNQVIA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ K RR+ V + I GC C+YC RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAWVNIIYGCNEKCSYCVVPSVRGVEQSRTPEAIYAEMEL 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KEV L ++ AYGRD+ G + L + + V ++P G LR ++
Sbjct: 188 LAKQGYKEVTLLGQNIDAYGRDLPGVTASGRHKHTLTDLLYQVHDIP--GIERLRFATSH 245
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
P + E L + + L P V H+P QSG + VL ++
Sbjct: 246 PRYFTERLIKACDEL--PKVCEHFHIPFQSGDNDVLKAMKR 284
>gi|168335412|ref|ZP_02693503.1| MiaB-like tRNA modifying enzyme YliG [Epulopiscium sp. 'N.t.
morphotype B']
Length = 446
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 130/272 (47%), Gaps = 16/272 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
T+ + GC N DSE+M G L+ G+ L ++AD+ ++NTC + Q ++D+++
Sbjct: 4 TVTFLSLGCDKNLVDSEHMLGLLNEGGFVLISEEDKADVIIVNTCCFIDDAKQESIDSIL 63
Query: 119 AKCKSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEV 171
+ K K L+V GC+ + + L+E+ V ++VG D++V + L +EV
Sbjct: 64 EVAQYKKTGNCKALIVTGCMAERYKTELLEEMPEVDAVVGTTSYDKIVHIARNVLDQNEV 123
Query: 172 RL-LHRKKLPALD-LPKV-RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ P L+ +P+V + + I GC CTYC RG S E +V
Sbjct: 124 KQHFEDVNRPHLENMPRVLTTGGYFAYIKIAEGCNSHCTYCIIPSLRGQYRSRPKEKIVE 183
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
V + DGV E+ L +++T YG D G L LL + DG +RI P I
Sbjct: 184 EVMQLAEDGVSEIILVAQNTTMYGIDKGYTLTNLLQELS---DIDGIEWIRILYCYPENI 240
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ L E +V C Y L +P+Q SD +L
Sbjct: 241 TDELIEEIKVNSKVCKY--LDIPIQHSSDQIL 270
>gi|421872709|ref|ZP_16304326.1| RNA modification enzyme, MiaB family protein [Brevibacillus
laterosporus GI-9]
gi|372458124|emb|CCF13875.1| RNA modification enzyme, MiaB family protein [Brevibacillus
laterosporus GI-9]
Length = 479
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 142/286 (49%), Gaps = 23/286 (8%)
Query: 50 SLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKS 108
++ K E + + T GC N DS+ MA + GY L DN ++A + ++NTC + +
Sbjct: 32 EMTEKTTPREKVAIVTLGCEKNLVDSDMMAHLIDEKGYELVDNPDDATVVIVNTCGFIDA 91
Query: 109 PSQSAMDTLI--AKCKSAKK--PLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEV 161
+ +++ ++ A+ K + K LVVAGC+ Q ++ L E+ V IVG ++ V
Sbjct: 92 AKEESVNKILDMAELKESGKLKSLVVAGCLTQRYKEDLLHEIPEVDGIVGTGDFMSIINV 151
Query: 162 VEETLKGHEVRLLHRKKLPALDLPKVRRNK-----FVEILPINVGCLGACTYCKTKHARG 216
+E+TL G L+ P + +V + K + I GC CT+C RG
Sbjct: 152 IEDTLIGKRTSLIGN---PVFNYEQVVKRKVKEGTYTTYTKIAEGCDNNCTFCSIPLMRG 208
Query: 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDG 274
S ++ES+V + G+ E+ L ++D+ YG D+ + LP LLN + +E+ DG
Sbjct: 209 KFRSRSIESIVEEATYLATKGIVEISLIAQDSTNYGMDLYGKLMLPELLNRL-SEV--DG 265
Query: 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+R+ P F + L I ++P V ++ +P+Q DA+L
Sbjct: 266 IEWVRLHYAYPGFFTDEL--IETFAKNPKVCKYIDMPLQHSEDAIL 309
>gi|416390510|ref|ZP_11685519.1| tRNA-i(6)A37 methylthiotransferase [Crocosphaera watsonii WH 0003]
gi|357264032|gb|EHJ12968.1| tRNA-i(6)A37 methylthiotransferase [Crocosphaera watsonii WH 0003]
Length = 452
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 22/281 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ + + AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFKWSQDPNGADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 --KSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ K P LVVAGCV Q G + L+ + + +V G Q +R+ +++ + G++V
Sbjct: 69 AKRKHKNPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLEDLLTQVFDGNQVIA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ K RR+ V + I GC C+YC RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAWVNIIYGCNEKCSYCVVPSVRGVEQSRTPEAIYAEMEL 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KEV L ++ AYGRD+ G + L + + V ++P G LR ++
Sbjct: 188 LAKQGYKEVTLLGQNIDAYGRDLPGVTASGRHKHTLTDLLYQVHDIP--GIERLRFATSH 245
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
P + E L + + L P V H+P QSG + VL ++
Sbjct: 246 PRYFTERLIKACDEL--PKVCEHFHIPFQSGDNDVLKAMKR 284
>gi|404492825|ref|YP_006716931.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelobacter
carbinolicus DSM 2380]
gi|123756643|sp|Q3A594.1|MIAB_PELCD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|77544901|gb|ABA88463.1| tRNA (2-methylthio-N6-dimethylallyl-A37) methylthiotransferase
[Pelobacter carbinolicus DSM 2380]
Length = 438
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 145/284 (51%), Gaps = 25/284 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y++TFGC N DSE + G + + GY+ D+ E+A++ ++NTC++++ ++ + +
Sbjct: 2 KSFYLETFGCQMNVVDSEQIVGLVQSLGYSSVDSPEQANLIILNTCSIRARAERKVYGHL 61
Query: 119 AKCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEET----L 166
+ K K+ + V GCV Q G R L+++ + IV G I R+ ++V +
Sbjct: 62 GRFKPLKQRRPELIIAVCGCVAQQEGQRMLEKVPYLDIVCGTHNIHRLADMVRDAELHRA 121
Query: 167 KGHEVRLLH---RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+ EV L R++L P ++FV ++ GC C+YC H RG S
Sbjct: 122 RHVEVDFLEADKRRRLFPERAPSAEVSRFVTVIQ---GCDNFCSYCIVPHVRGREVSRPS 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIG 281
++ VR ++ G +E+ L ++ +YG D ++ LL VAE+ DG +R
Sbjct: 179 AEVLEEVRLLVEQGAREITLIGQNVNSYGCKEDDEISFASLLRK-VAEV--DGLERIRFM 235
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
++P + + L + L C + +H+PVQ+G DAVL ++
Sbjct: 236 TSHPKDLSDELIDCFADLDKLCKH--IHLPVQAGGDAVLKAMRR 277
>gi|375084996|ref|ZP_09731789.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megamonas funiformis YIT
11815]
gi|374567645|gb|EHR38854.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megamonas funiformis YIT
11815]
Length = 440
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 129/270 (47%), Gaps = 15/270 (5%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N SD E AGQL GY + E ADI +INTC V+ ++ + I + K K
Sbjct: 14 YGCQMNFSDGERFAGQLERMGYKPAEKLENADIIIINTCCVRESAEKKIYGKIGEIKHLK 73
Query: 126 --KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL--KGHEVRLLH 175
KP L + GC+ Q D K+ V V G ++ + V+EE +GH V+L
Sbjct: 74 QQKPDLILGITGCMAQKDGDAIFKKASHVDFVLGTNKMYDLPAVLEEIFASRGHIVKLAG 133
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+P ++ N +PI GC CTYC + RG S + +V + +
Sbjct: 134 DYDMPP-NVEPAENNSLFAFVPIMYGCNNFCTYCIVPYVRGRERSRAPQEIVAEITKLAQ 192
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+GVKEV L ++ +YG+D L A+V ++ +G +R ++P + + + E
Sbjct: 193 NGVKEVTLLGQNVNSYGKDRDDADFADLLAMVDKI--EGIERIRYMTSHPRDLTDKVIET 250
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ +H C + H+PVQ G+D +L +
Sbjct: 251 IKNSKHICEH--FHLPVQYGTDKMLKAMNR 278
>gi|222055074|ref|YP_002537436.1| MiaB-like tRNA modifying enzyme [Geobacter daltonii FRC-32]
gi|221564363|gb|ACM20335.1| MiaB-like tRNA modifying enzyme [Geobacter daltonii FRC-32]
Length = 438
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 137/278 (49%), Gaps = 19/278 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ + T GC NQ +S MA L G+++ ADI++INTCTV S + + LI
Sbjct: 7 QTVAITTLGCKINQFESAAMAETLGKEGFSIVPFDGAADIYVINTCTVTSKTDAESRRLI 66
Query: 119 AKCKSAKKP---LVVAGCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
+ S + P +VV GC Q +L+++ GV+ I+G + + E++++ G R+
Sbjct: 67 RRA-SRQNPSAKIVVTGCYAQVAFEELQDMPGVNLILGNSEKKGIAEMLKDL--GENQRV 123
Query: 174 LHRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
L L+ R F E L + GC C+YC +ARG S ++E +
Sbjct: 124 LVSDISRELNERGTRLESFAEHTRAFLQVQNGCDAFCSYCIVPYARGRSRSVSLEEALAG 183
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+RT G KEV L+ GAYG D+ ++L LLNA E + +RIG P
Sbjct: 184 IRTFAERGFKEVVLTGIHLGAYGLDLNPPLSLLDLLNAAEKERLVE---RIRIGSVEPTE 240
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ + L I+ + + V LH+P+QSG D VL +
Sbjct: 241 VSDAL--ISFLAKSATVCPHLHIPLQSGHDRVLKAMNR 276
>gi|91792176|ref|YP_561827.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Shewanella
denitrificans OS217]
gi|123357083|sp|Q12R22.1|MIAB_SHEDO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|91714178|gb|ABE54104.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shewanella denitrificans
OS217]
Length = 474
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 150/279 (53%), Gaps = 20/279 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KT+GC N+ DS MA L + GY LTD++ EAD+ L+NTC+++ +Q +
Sbjct: 2 SKKLHIKTWGCQMNEYDSSKMADLLDEYQGYTLTDDATEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKS--AKKP---LVVAGCVP-QGSRDLKE-LEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K+ KKP + V GCV Q + +K+ + V I+ G Q + R+ E++++ +G
Sbjct: 62 QLGRWKTLKDKKPGLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIDQVQRG 121
Query: 169 HEVRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+V + + ++ D LP+ R + + I GC C++C + RG S + +
Sbjct: 122 EKVVIDVSFPEIEKFDRLPEPRADGPTAFVSIMEGCSKYCSFCVVPYTRGEEVSRPQDDI 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + + GV+EV L ++ AY D + L +VA + DG +R +
Sbjct: 182 ILEIAQLAEQGVREVNLLGQNVNAYRGATHDDQICTFAELLRLVASI--DGIDRIRFTTS 239
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLS 321
+P +E ++I +V P + SFLH+PVQSGSD +L+
Sbjct: 240 HP---IEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILT 275
>gi|212697105|ref|ZP_03305233.1| hypothetical protein ANHYDRO_01670 [Anaerococcus hydrogenalis DSM
7454]
gi|212675880|gb|EEB35487.1| hypothetical protein ANHYDRO_01670 [Anaerococcus hydrogenalis DSM
7454]
Length = 432
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 141/294 (47%), Gaps = 39/294 (13%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
++T +KT GC NQ +SE + G+ +++ ADI++INTCTV + S
Sbjct: 2 SKTFNIKTLGCKVNQYESEAIEELFKKRGFEKKEDN--ADIYVINTCTVTNMSDRKSRQT 59
Query: 118 IAKCKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
I+K + K ++A GC Q D +KE+EGV IV G + + VV++ E + H
Sbjct: 60 ISKARKENKDAIIAVIGCYSQVKGDEVKEIEGVDIVLGSRNKEEVVDLCENFISDH---- 115
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV-------------GCLGACTYCKTKHARGHLGS 220
+ D+ + + + +E L I+ GC C+YC +ARG++ S
Sbjct: 116 -----VKTKDVEEFKIGEAIEDLEISNQADMTRSYIKIQDGCNMYCSYCLIPYARGNIAS 170
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
+ S++ + + +G KE+ L+ +YG+D+ +N+ L++ I DG +R+
Sbjct: 171 RDLVSIIDEAKRLRDNGFKEIVLTGIHVASYGKDLDLNIS-LIDVIEHIAKIDGIERIRL 229
Query: 281 GMTNPPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTK 330
P I L+ +K+ + H H+ +QSGSD VL + + TK
Sbjct: 230 SSMEPRHIDREFLQRMKDTKKACDH------FHLSLQSGSDDVLKLMNRKYDTK 277
>gi|431807912|ref|YP_007234810.1| 2-methylthioadenine synthetase [Brachyspira pilosicoli P43/6/78]
gi|430781271|gb|AGA66555.1| 2-methylthioadenine synthetase [Brachyspira pilosicoli P43/6/78]
Length = 436
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 134/278 (48%), Gaps = 16/278 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ----SAM 114
+ Y++ +GC N++DS + L G+ T+N E AD +INTC+V++ ++ S +
Sbjct: 2 KNFYLENYGCQMNKADSNSLINSLMQEGFIQTENHENADNIIINTCSVRAHAEERVFSRV 61
Query: 115 DTLIAKCKSAKK--PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
A K KK +++ GC+ Q S++ LE + + + + V +++ LK EV
Sbjct: 62 KLFNANRKKNKKDTKIIIMGCMAQTSKE--HLESLGVDKIFDVYNEVNIID-YLKDEEVF 118
Query: 173 LLHRKKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ + V +K +PI GC CTYC H RG + S E ++ V+
Sbjct: 119 VRKFNDNYIFNKSYVDEDKPHKAFIPITHGCNNWCTYCIVPHTRGKMISRKSEEILDEVK 178
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAI--VAELPPDGSTMLRIGMTNPPF 287
+I +G KE+ L ++ +YG DI +N LL I V + +R ++P
Sbjct: 179 RLIDEGAKEITLLGQNVNSYGLDIDNEINFTELLYKIDKVIDEKAKDKVWIRFLTSHPKD 238
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ L + L C + +H+P QSGSD +LS+ +
Sbjct: 239 FDKELADAIWSLNSLCKH--IHLPFQSGSDRILSLMNR 274
>gi|333978768|ref|YP_004516713.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Desulfotomaculum kuznetsovii DSM 6115]
gi|333822249|gb|AEG14912.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Desulfotomaculum kuznetsovii DSM 6115]
Length = 445
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 144/288 (50%), Gaps = 20/288 (6%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
+ +IP E I TFGC N DSE +AG L + GY ++ EAD+ L+NTC V+ +
Sbjct: 1 MKERIPTYEVI---TFGCQMNDHDSEVIAGMLESLGYEPAASTGEADVILVNTCCVRETA 57
Query: 111 QSAMDTL---IAKCKSAKKPLV--VAGCVPQG---SRDLKEL--EGVSIVGVQQIDRVVE 160
++ + L +A K K L+ +AGC+ Q +R +K + I+G + R+ E
Sbjct: 58 ENKIYGLLGRLAHLKDKKGDLIIGIAGCMTQQPGVARKIKNRFPQVDLILGTHNLHRLPE 117
Query: 161 VVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
++ + + E + + + +LP R ++ + I GC CTYC + RG
Sbjct: 118 LLLQARECRERVMEVWDQAGEIVENLPIRRASRVKAWVNITYGCNNFCTYCIVPYVRGRE 177
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTM 277
S E ++ +R ++ +G +EV L ++ +YG+D+ G L A V ++P G
Sbjct: 178 RSRRPEDILNEIRQLVQEGYREVTLLGQNVNSYGKDLPGPTSFARLLAEVDQIP--GLWR 235
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+R ++P + L I + R P V +H+PVQ+GS+ +L + +
Sbjct: 236 IRFTTSHPRDFTQEL--IDTIARCPHVCEHIHLPVQAGSNRILKLMNR 281
>gi|295696236|ref|YP_003589474.1| MiaB family RNA modification protein [Kyrpidia tusciae DSM 2912]
gi|295411838|gb|ADG06330.1| RNA modification enzyme, MiaB family [Kyrpidia tusciae DSM 2912]
Length = 484
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 18/272 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC N+ DSE MAG L GY EEAD+ L NTC V+ ++ + I +
Sbjct: 44 WIRTYGCQMNEHDSEIMAGMLQEMGYRPASAPEEADLILFNTCAVRENAEDKVFGEIGRI 103
Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE- 170
K K+ L + GC+ Q + + + + G + ++ E+V + + E
Sbjct: 104 KPLKRRHPELLLGLCGCMAQEEKVRQFVRDTFPHVDLVFGTHNLHQLPELVVQAMASQET 163
Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ R +LPK+R++ + I GC CTYC RG S E +V
Sbjct: 164 VFAVWDRPGQVVENLPKLRQDGVKAWVNIQYGCNKYCTYCIVPFTRGRERSRLPEDVVAE 223
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
V+ + +G++EV L ++ YG D+G V+ LL VA +P G +R +NP
Sbjct: 224 VKQLAEEGIREVTLLGQNVNDYGLDLGDVDFADLLQQ-VARIP--GIERVRFTTSNPWNF 280
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ L ++ C + +H+PVQSG++ +L
Sbjct: 281 TDKLIDVIAAEEAICEH--IHLPVQSGNNRIL 310
>gi|298493062|ref|YP_003723239.1| MiaB family RNA modification protein ['Nostoc azollae' 0708]
gi|298234980|gb|ADI66116.1| RNA modification enzyme, MiaB family ['Nostoc azollae' 0708]
Length = 453
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 142/278 (51%), Gaps = 26/278 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +A++ L NTCT++ ++ + + + +
Sbjct: 8 HITTFGCQMNKADSERMAGILEKMGFEWSEDPNDANVILYNTCTIRENAEQKVYSYLGRQ 67
Query: 122 KSAK--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K +P LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V
Sbjct: 68 AKRKHERPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLEDLLESVFDGNQVVA 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ + RR+ V +NV GC CTYC + RG S T ++ +
Sbjct: 128 TEEVHILE-DITQPRRDSQVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPTAIRAEME 185
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G +L L + + V ++P G LR +
Sbjct: 186 ELGRKGYKEVTLLGQNIDAYGRDLPGTTPEGRHLHTLTDLLYYVHDVP--GIERLRFATS 243
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+P + E L K AE+ P V H+P QSG + +L
Sbjct: 244 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQIL 278
>gi|150390422|ref|YP_001320471.1| MiaB-like tRNA modifying protein YliG [Alkaliphilus metalliredigens
QYMF]
gi|238065283|sp|A6TRJ4.1|RIMO_ALKMQ RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
Short=S12 MTTase; Short=S12 methylthiotransferase;
AltName: Full=Ribosome maturation factor RimO
gi|149950284|gb|ABR48812.1| MiaB-like tRNA modifying enzyme YliG [Alkaliphilus metalliredigens
QYMF]
Length = 446
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 147/278 (52%), Gaps = 18/278 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLI 118
++Y+++ GCS N D+E M G L+ +GY LT+N +AD+ ++NTC +++ + +++ +I
Sbjct: 4 SVYVESLGCSKNLIDAEVMLGILNQYGYKLTNNEVKADVIIVNTCGFIEAAKEESINKII 63
Query: 119 ---AKCKSAKKPLVVAGCVPQGSRDLKEL-----EGVSIVGVQQIDRVVEVVEETLKGHE 170
K K L+VAGC+ G R K+L E +IVG +V+V+ +T+KG
Sbjct: 64 ELGQLKKDKLKLLIVAGCL--GERYQKDLLEELPEVDAIVGTGGYHEIVKVIHQTMKGQR 121
Query: 171 VRLLHRKKLPALD-LPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + P + LP+++ + I+ GC CTYC RG S +E+++
Sbjct: 122 IVEIGDINRPYDETLPRIQTTASHSAYIKISDGCDNYCTYCIIPKLRGKYRSRKMENIIQ 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 287
+T+ +GVKE+ L ++DT YG D+ L+A++ +L +G +RI P
Sbjct: 182 EAQTLANNGVKEIILIAQDTTRYGIDLYDEYR--LSALLDKLSEVEGIQWIRILYCYPEM 239
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
I + L IA + + V ++ +P+Q S +L + +
Sbjct: 240 ITDEL--IATIKNNDKVCKYIDIPIQHCSTKILKLMNR 275
>gi|357039505|ref|ZP_09101298.1| RNA modification enzyme, MiaB family [Desulfotomaculum gibsoniae
DSM 7213]
gi|355357868|gb|EHG05638.1| RNA modification enzyme, MiaB family [Desulfotomaculum gibsoniae
DSM 7213]
Length = 456
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 134/282 (47%), Gaps = 22/282 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ + T GC NQ +S + GY + D AD+++INTCTV LI +
Sbjct: 6 VALTTLGCKVNQYESAALEELFRRRGYQVVDFDSPADVYIINTCTVTHLGDRKSRQLIRR 65
Query: 121 CKSAKKPLVVA--GCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
VVA GC Q + D + +EGV +VG +V++VE KG +V+ +
Sbjct: 66 AGRTNPEAVVAVTGCYAQTAPDEVLNVEGVDLVVGAGHRAEIVDLVENVSKGRKVKAVED 125
Query: 177 -------KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
++LP + + + L I GC C+YC +ARG L S + E+++
Sbjct: 126 IARCHDFEELPG----ESHQGRVRAFLKIQEGCENYCSYCIIPYARGPLRSRSPENVLAG 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR ++ G KEV L+ TGAYGR GV+L LL A++A +P G LR+ P
Sbjct: 182 VRNLVESGFKEVVLTGIHTGAYGRGNQDGVDLVGLL-ALLANVP--GLVRLRLSSLEPND 238
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPT 329
I L ++ P LH+P+QSG D +L ++ T
Sbjct: 239 ITPDLLDLMAA--GPPFCRHLHIPLQSGDDYILKRMRRRYDT 278
>gi|326791250|ref|YP_004309071.1| ribosomal protein S12 methylthiotransferase rimO [Clostridium
lentocellum DSM 5427]
gi|326542014|gb|ADZ83873.1| Ribosomal protein S12 methylthiotransferase rimO [Clostridium
lentocellum DSM 5427]
Length = 448
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 139/275 (50%), Gaps = 30/275 (10%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA---- 119
+ GC N DSE+M G L+ G++LT + E+AD+ ++NTC ++ + +++ ++
Sbjct: 9 SLGCDKNLVDSEHMLGLLNQGGFSLTGDEEKADVIVVNTCCFIEDAKKESIENILEVAGY 68
Query: 120 KCKSAKKPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVV-----EETLKGHEV 171
K K L+V GC+ Q + L E+ V ++VG D++V++ ++ L+
Sbjct: 69 KETGNCKALIVTGCMAQRYKQEILDEIPEVDAVVGTTSYDKIVDIANGILEQKGLRTQHF 128
Query: 172 RLLHRKKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
L+ R+ L ++P++ + + I+ GC CTYC RG S ++ + V
Sbjct: 129 DLIDREMLD--EMPRILTTAGYFAYVKISEGCDKHCTYCIIPKLRGKYRSRQMDKIKAEV 186
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL-----PPDGSTMLRIGMTNP 285
+ ADGV E+ L ++DT YGRD L NA +A+L +G +R+ P
Sbjct: 187 EKLAADGVSEIILVAQDTTEYGRD-------LENASLAKLLHELGEIEGIEWIRVLYCYP 239
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
I + L I E+ +P V +L +P+Q S A+L
Sbjct: 240 ESITDEL--IEEIKTNPKVCKYLDIPIQHASTAIL 272
>gi|452944045|ref|YP_007500210.1| RNA modification enzyme, MiaB family [Hydrogenobaculum sp. HO]
gi|452882463|gb|AGG15167.1| RNA modification enzyme, MiaB family [Hydrogenobaculum sp. HO]
Length = 435
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 138/277 (49%), Gaps = 19/277 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PSQSAMDTL--I 118
++KT+GC N +DSE + G L GY E+AD+ ++NTCT++ P Q L I
Sbjct: 4 FIKTYGCQMNINDSEKIKGILQTQGYEPATKEEDADLVILNTCTIREKPDQKVWSHLGEI 63
Query: 119 AKCKSAKKPLV---VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
K KS K P V V GC+ Q G ++ + +V G + I + +++E+ G+
Sbjct: 64 KKLKS-KNPNVKIGVCGCMAQRAGYEIASKMPFIDLVFGTKNIHHIPKLLEDVKLGNRAI 122
Query: 173 LLHRKKLPALDL----PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ ++ P ++ P VR N + + I GC CTYC RG S +S++
Sbjct: 123 EILEEEDPLENILDSYPTVRDNSYCAYVTIMRGCDKECTYCVVPFTRGKERSRNPQSILD 182
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
V++++ GV E+ L ++ AYG+DIG LL I +G +R +P +
Sbjct: 183 EVKSLVDSGVMEIHLIGQNVTAYGKDIGYPFYKLLENISK---IEGVKRIRFTTGHPIDM 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ + E L P + + LH+P Q+GSD +L + ++
Sbjct: 240 TDDIIETMASL--PNMVNHLHLPFQAGSDRILELMKR 274
>gi|406914377|gb|EKD53564.1| hypothetical protein ACD_61C00012G0001, partial [uncultured
bacterium]
Length = 396
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 141/309 (45%), Gaps = 69/309 (22%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
++++ TFGC N+SDSE + G + GY D +EAD +INTC+V+ QSA D +
Sbjct: 11 SVFINTFGCQANKSDSERILGDYLSRGYTEADTWKEADEIVINTCSVR---QSAEDRVTG 67
Query: 120 ---------------KCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVE 163
C+ A+ +++ GC+ +++K L + QID ++ + E
Sbjct: 68 FLLNVEKFFDGKIRPACRKARPKIILTGCMLHFNEKEIKTL-------LPQIDEILPIGE 120
Query: 164 ETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+ +R+ K +PI+ GC CTYC +RG S +
Sbjct: 121 ----------------VGFNQKAIRKEKDKAFIPISSGCNSFCTYCIVPFSRGRERSRPL 164
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-IGVNLPILL---NAIVAELPPDGSTMLR 279
E +VG + T+ A+G KE+ L ++ ++G + +GV L + + ++ P +
Sbjct: 165 EDIVGEIETLAAEGYKEITLLGQNVNSWGLEKVGVALRKMFMDKDKFTPDIIPSNQSQYF 224
Query: 280 IGMTNPPFI--------LEHLKEIA---------------EVLRHPCVYSFLHVPVQSGS 316
PPF+ +E +K+I+ E+ +P + F+H+PVQSGS
Sbjct: 225 KPQDTPPFVILLREIGKIEGIKKISFFTSNPWDFWDELIDEIASNPKIDRFIHLPVQSGS 284
Query: 317 DAVLSVSQK 325
+ +L + +
Sbjct: 285 NRILKLMNR 293
>gi|422302444|ref|ZP_16389807.1| Ribosomal protein S12 methylthiotransferase rimO [Microcystis
aeruginosa PCC 9806]
gi|389788316|emb|CCI16070.1| Ribosomal protein S12 methylthiotransferase rimO [Microcystis
aeruginosa PCC 9806]
Length = 437
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 142/280 (50%), Gaps = 26/280 (9%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI + GC N+ DSE+M G L+ GY + ++ E AD ++NTC+ +++ + ++ TL+
Sbjct: 6 TIAISHLGCEKNRIDSEHMLGLLAKAGYPVDNDEELADYVIVNTCSFIQAAREESVRTLV 65
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
+ A K ++++GC+ Q +D L EL E V+IVG ++VE+VE G V+ +
Sbjct: 66 -ELAEANKKIIISGCMAQHFQDELLTELPEAVAIVGTGDYQKIVEIVERVETGERVKEVS 124
Query: 176 RKKLPALD--LPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
D LP+ R ++ V L + GC C +C H RG S ++ES+V R
Sbjct: 125 ADPTFIADENLPRYRTTSEGVAYLRVAEGCDYRCAFCIIPHLRGDQRSRSIESIVAEARQ 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIV-AELPPDGSTMLRIGMTNP---- 285
+ + GV+E+ L S+ T YG D+ L LL A+ ++P +R+ P
Sbjct: 185 LASQGVQELILISQITTNYGLDLYGEPKLAELLRALAEVDIP-----WIRVHYAYPTGLT 239
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
P ++E ++E P V +L +P+Q +L +
Sbjct: 240 PKVIEAIRE------SPNVLPYLDLPLQHSHPDILRAMNR 273
>gi|325660993|ref|ZP_08149620.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325472500|gb|EGC75711.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 440
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 136/276 (49%), Gaps = 25/276 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA 119
I + GC N D+E M G L++ GY + ++ EADI +INTC + + ++ T++
Sbjct: 3 ILFVSLGCDKNLVDTEVMLGMLASRGYQMVEDESEADIIVINTCCFIHDAKEESIQTILE 62
Query: 120 KCKSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVR 172
+ K K L+V GC+ Q + + E+ V +++G D++++ V+E L+GH
Sbjct: 63 MSELKKEGRLKALIVTGCLAQRYQQEIIDEIPEVDAVLGTTSYDKILDAVDEALEGH--- 119
Query: 173 LLHRKKLPALD-LPKVRRNKFVEI------LPINVGCLGACTYCKTKHARGHLGSYTVES 225
H K+ +D LP V + V L I GC CTYC RG+ S +E
Sbjct: 120 --HYLKMTDIDALPTVDSKRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGNFRSVPMEQ 177
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTN 284
LV + + GVKE+ L +++T YG+D+ L+ ++ EL G +R+
Sbjct: 178 LVHEAQELAEQGVKELILVAQETTLYGKDLYGEKS--LHKLLKELCKIAGIRWIRVLYCY 235
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P I + L ++ + C Y L +P+Q SD +L
Sbjct: 236 PEEITDELIQVMKEESKICHY--LDLPIQHASDGIL 269
>gi|443326848|ref|ZP_21055489.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Xenococcus sp. PCC 7305]
gi|442793564|gb|ELS03010.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Xenococcus sp. PCC 7305]
Length = 446
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 136/276 (49%), Gaps = 18/276 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DSE MAG L + T+ +AD+ L NTCT++ ++ + + + +
Sbjct: 12 TFGCQMNKADSERMAGILEEMDFQWTEEPNDADLVLYNTCTIRDNAEQKVYSYLGRQAKR 71
Query: 125 K--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K KP LVVAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 72 KHQKPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVATEP 131
Query: 177 KKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ D+ K RR+ K + I GC C+YC + RG S T E++ + +
Sbjct: 132 IHI-VEDITKPRRDSKVTAWVNIIYGCNERCSYCVVPNVRGTEQSRTPEAIKSEMSDIGK 190
Query: 236 DGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
G KE+ L ++ AYGRD+ G + L + + + +R ++P +
Sbjct: 191 QGYKEITLLGQNIDAYGRDLPGSTPEGRHQHTLTDLLYYVHDVETVDRIRFATSHPRYFT 250
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
E L + + L P V H+P QSG + +L ++
Sbjct: 251 ERLIKACQEL--PKVCEHFHIPFQSGDNEILKAMKR 284
>gi|443311749|ref|ZP_21041373.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechocystis sp. PCC 7509]
gi|442778149|gb|ELR88418.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechocystis sp. PCC 7509]
Length = 456
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 139/285 (48%), Gaps = 30/285 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG + G+ +++ AD+ + NTCT++ ++ + + + K
Sbjct: 11 HITTFGCQMNKADSERMAGIIENMGFEWSEDPNNADLIVYNTCTIRDSAEQKVYSYLGKQ 70
Query: 122 KSAKK-----PLVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K LV+AGC+ Q R + EL+ V +G Q +R+ +++++ G++V
Sbjct: 71 AKRKHREPHLTLVIAGCLAQQEGEALLRRVPELDLV--MGPQHANRLEDLLQQVYNGNQV 128
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ A D+ RR+ V +NV GC CTYC + RG S T E++
Sbjct: 129 VATESAHI-AEDITTPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGIEQSRTPEAIRAE 186
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIG 281
+ + G KE+ L ++ AYGRD+ P L + ++P G LR
Sbjct: 187 IERLAKMGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYFIHDVP--GIERLRFA 244
Query: 282 MTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
++P + E L K AE+ P V H+P QSG + +L + +
Sbjct: 245 TSHPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNEILKLMSR 286
>gi|237730638|ref|ZP_04561119.1| MiaB protein [Citrobacter sp. 30_2]
gi|226906177|gb|EEH92095.1| MiaB protein [Citrobacter sp. 30_2]
Length = 490
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 144/285 (50%), Gaps = 28/285 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L A GY LTD +EEAD+ L+NTC+++ +Q +
Sbjct: 16 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 75
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K K+ + V GCV +G + V I+ G Q + R+ E++ + ++G
Sbjct: 76 QLGRWKLLKEKNPKLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINK-VRG 134
Query: 169 HEVRL----LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
R + ++ D LP+ R + I GC CTYC + RG S
Sbjct: 135 STTRSPVVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCNKYCTYCVVPYTRGEEVSRPA 194
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGA-----YGRDIGVNLPILLNAIVAELPPDGSTML 278
+ ++ + + A GV+EV L ++ A Y IG + LL + A DG +
Sbjct: 195 DDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTIG-SFADLLRLVAA---IDGIDRI 250
Query: 279 RIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSV 322
R ++P +E +I EV R P + SFLH+PVQSGSD VL++
Sbjct: 251 RFTTSHP---IEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNL 292
>gi|15614935|ref|NP_243238.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
halodurans C-125]
gi|81786524|sp|Q9KAB7.1|MIAB_BACHD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|10174992|dbj|BAB06091.1| BH2372 [Bacillus halodurans C-125]
Length = 538
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 139/285 (48%), Gaps = 16/285 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N DSE MAG L G+ TD + +AD+ LINTC ++ +++ + I K
Sbjct: 99 VRTYGCQMNIHDSENMAGMLKEMGFEATDETTDADVILINTCAIRENAENKVFGEIGNLK 158
Query: 123 SAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE-- 170
K+ + V GC+ Q +R +++ + + I G I R+ ++ L G E
Sbjct: 159 QLKREKPELVIGVCGCMSQEEGVVNRIMQKHQHIDMIFGTHNIHRLPHLLRNALFGKEMI 218
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + ++ ++P+ R K + I GC CTYC + RG S E ++ V
Sbjct: 219 IEVWSKEGDIVENMPRAREGKTQAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEV 278
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + G KE+ L ++ AYG+D+ +L L ++ E+ +R ++P +
Sbjct: 279 RDLARQGYKEITLLGQNVNAYGKDLA-DLDYGLGDLMDEIRKIDIPRVRFTTSHPRDFDD 337
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS-VSQKIVPTKSVSL 334
HL E+ + + + +H+PVQ G+ +L +++K + V L
Sbjct: 338 HLIEV--LAKGGNLVEHIHLPVQHGNSEILKLMARKYTREQYVEL 380
>gi|427820641|ref|ZP_18987704.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|427824382|ref|ZP_18991444.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
gi|410571641|emb|CCN19875.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|410589647|emb|CCN04720.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
Length = 475
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 149/299 (49%), Gaps = 27/299 (9%)
Query: 46 SKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTC 104
S G+ + G +Y++TFGC N+ DS+ MA L A G LTDN E+AD+ L NTC
Sbjct: 14 SDAGTPATAAQGLGKLYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTC 73
Query: 105 TVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQID 156
+V+ +Q + + + + + KK + V GCV +G +K V +V G Q +
Sbjct: 74 SVREKAQEKVFSDLGRVQHLKKQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLH 133
Query: 157 RVVEVVE----ETLKGHEVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKT 211
R+ ++++ + + ++ +K AL P+V FV I+ GC C++C
Sbjct: 134 RLPDLIKRRRAQGVSQVDISFPEIEKFDALPPPRVDGATAFVSIME---GCSKYCSFCVV 190
Query: 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAI 266
+ RG S + ++ V + GVKEV L ++ AY +G + +LL
Sbjct: 191 PYTRGEEVSRPFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGKIADFAMLLE-Y 249
Query: 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
V E+P G +R ++P + + + + R P + SFLH+PVQ+GSD VL+ ++
Sbjct: 250 VHEIP--GIERIRYTTSHPKEMTQRM--VDAYARLPKLVSFLHLPVQAGSDRVLAAMKR 304
>gi|354557790|ref|ZP_08977048.1| Ribosomal protein S12 methylthiotransferase rimO
[Desulfitobacterium metallireducens DSM 15288]
gi|353550584|gb|EHC20021.1| Ribosomal protein S12 methylthiotransferase rimO
[Desulfitobacterium metallireducens DSM 15288]
Length = 442
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 136/278 (48%), Gaps = 37/278 (13%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
T GC NQ DSE M+G++S Y L E+ADI ++NTCT + S + ++DT++ +
Sbjct: 9 TLGCPKNQVDSEVMSGRISE-KYDLVQELEQADIIIVNTCTFIDSAKEESVDTILEMAQY 67
Query: 124 AK----KPLVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + L+ AGC+ Q D++EL+G I+G + V+EV++E +
Sbjct: 68 KQEGHCQTLLAAGCLAQRYGEELMTDIQELDG--ILGTGNLAEVLEVIDEAQ-------I 118
Query: 175 HRKKLPALDLPKVRRN----------KFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
H+ K P+ N K + + GC CTYC RGH S E
Sbjct: 119 HKTKHVTQGAPEFLYNDLMPRQRLSPKHYAYVKVAEGCDNFCTYCIIPKVRGHFRSRPEE 178
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGM 282
S++ +R + +GVKE+ L ++DT YG+D+ + LP L+ VAE+ G +R+
Sbjct: 179 SILREIRQMADEGVKEILLIAQDTTRYGKDLYGELRLPSLVRK-VAEI--QGIEWIRLMY 235
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P + L I + P V ++ +P+Q + +L
Sbjct: 236 CYPDLFSDEL--IQTMKETPKVCRYIDLPLQHADNQIL 271
>gi|428769245|ref|YP_007161035.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium aponinum
PCC 10605]
gi|428683524|gb|AFZ52991.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium aponinum
PCC 10605]
Length = 451
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 18/278 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+ TFGC N++DSE MAG L G+ T++ +A + + NTCT++ ++ + + + +
Sbjct: 10 ITTFGCQMNKADSERMAGILENMGFEFTEDPNQAKVLVYNTCTIRDNAEQKVYSYLGRQA 69
Query: 123 SAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 174
K LVVAGCV Q G + L+ + + +V G Q +R+ ++E+ G+++
Sbjct: 70 KRKHQEPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDSLLEQVFAGNQIVAT 129
Query: 175 HRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ D+ K RR V + I GC C+YC + RG S T E++ + +
Sbjct: 130 EPIHIYE-DITKPRRESEVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIKAEIEEL 188
Query: 234 IADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
G KE+ L ++ AYGRD+ G + L + + +G +R ++P +
Sbjct: 189 AKQGYKEITLLGQNIDAYGRDLPGVTETGRHKHTLTDLLYYIHDIEGIERIRFATSHPRY 248
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
E L I P V H+P QSG + +L ++
Sbjct: 249 FTERL--IKACYELPKVCEHFHIPFQSGDNEILKAMKR 284
>gi|383755141|ref|YP_005434044.1| putative ribosomal protein S12 methylthiotransferase RimO
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381367193|dbj|BAL84021.1| putative ribosomal protein S12 methylthiotransferase RimO
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 443
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 131/274 (47%), Gaps = 29/274 (10%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI----- 118
+ GCS N D+E M G+L G LT++ EADI ++NTC ++S + ++ T++
Sbjct: 7 SLGCSKNLVDTEVMLGELKNHGIELTNDPAEADILIVNTCAFIQSAKEESITTVLNMADY 66
Query: 119 ---AKCKSAKKPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+C+S L+VAGC+ Q + L EL E +I+G R++E VEETLKG V
Sbjct: 67 KESGRCRS----LIVAGCLGQRYKQELLDELPEADAILGTGAWGRIMEAVEETLKGRRVV 122
Query: 173 L------LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+ L+ +K P + + + + I GC C +C RG S +E +
Sbjct: 123 IADEDEALYDEKTPRI----LTTPDYTAYVKIAEGCDNRCAFCAIPQIRGRFRSRRIEDI 178
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V + GV+EV ++D+ YGRDI N P L + + +R P
Sbjct: 179 CKEVEHLTEQGVREVVFIAQDSTNYGRDI-YNRPALAELLREVVKVPKLKWVRTLYCYPK 237
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
F + L ++ P V ++ +P+Q ++VL
Sbjct: 238 FFTDELIDVYAT--EPKVCKYVDLPLQHAHNSVL 269
>gi|160903280|ref|YP_001568861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Petrotoga
mobilis SJ95]
gi|229890590|sp|A9BGV7.1|MIAB_PETMO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|160360924|gb|ABX32538.1| RNA modification enzyme, MiaB family [Petrotoga mobilis SJ95]
Length = 439
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 132/284 (46%), Gaps = 12/284 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI-- 118
Y++TFGC N ++SE MAG L G+ T+N +EADI LIN+C V+ +++ M I
Sbjct: 3 FYIRTFGCQMNINESEIMAGLLKEEGFEWTENPKEADIILINSCAVREKAENKMYGAIGG 62
Query: 119 -AKCKSAKKPLV--VAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
K K K L+ V GC + R+ L+ + + V G + + + +V+ L G
Sbjct: 63 YGKLKDENKNLILGVGGCSAEKERENLLERFKNIDFVFGTRNVVDIGNLVKRALNGKRFA 122
Query: 173 LLHRK-KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
K D+PK+ +K + I GC C+YC + RG S +E ++ V
Sbjct: 123 DFSDKLNDVNYDIPKMPISKHHAWITIIYGCNKYCSYCIVPYTRGFEKSRPMEDIIREVE 182
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+ G KE+ ++ +YG+D G L I D + + P I +
Sbjct: 183 SYAKKGYKEITFLGQNVDSYGKDFGDKKSKLDLLIQKAAEFDSIKRIWFLTSYPSDITDS 242
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL-SVSQKIVPTKSVSL 334
L I V ++ H+P QSGS+ +L ++++K + + L
Sbjct: 243 L--IQTVANEEKAANYFHLPAQSGSNKILKAMNRKYTREEFIEL 284
>gi|429090738|ref|ZP_19153445.1| tRNA-i(6)A37 methylthiotransferase [Cronobacter dublinensis 1210]
gi|426744751|emb|CCJ79558.1| tRNA-i(6)A37 methylthiotransferase [Cronobacter dublinensis 1210]
Length = 474
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 142/279 (50%), Gaps = 18/279 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L + G+ LTD +EEADI L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLETTHGFTLTDVAEEADILLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K+ K+ + V GCV +G V I+ G Q + R+ E++ + +KG
Sbjct: 62 QLGRWKTLKEKNPDVIIGVGGCVASQEGDHIRDRARYVDIIFGPQTLHRLPEMINQ-VKG 120
Query: 169 HE--VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
V + ++ D LP+ R + I GC CTYC + RG S +
Sbjct: 121 TRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDD 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
+V + + A GV+EV L ++ A+ G + + + + DG +R ++
Sbjct: 181 IVLEIAQLAAQGVREVNLLGQNVNAWRGENYDGTIGTFADLLRLVAAIDGIDRIRFTTSH 240
Query: 285 PPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSV 322
P +E +I EV R P + SFLH+PVQSGSD VL++
Sbjct: 241 P---IEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNM 276
>gi|33600343|ref|NP_887903.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
bronchiseptica RB50]
gi|410474025|ref|YP_006897306.1| hypothetical protein BN117_3511 [Bordetella parapertussis Bpp5]
gi|427813578|ref|ZP_18980642.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|81431747|sp|Q7WMN3.1|MIAB_BORBR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|33567942|emb|CAE31855.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
gi|408444135|emb|CCJ50844.1| conserved hypothetical protein [Bordetella parapertussis Bpp5]
gi|410564578|emb|CCN22125.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
Length = 475
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 149/299 (49%), Gaps = 27/299 (9%)
Query: 46 SKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTC 104
S G+ + G +Y++TFGC N+ DS+ MA L A G LTDN E+AD+ L NTC
Sbjct: 14 SDAGTPATTAQGLGKLYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTC 73
Query: 105 TVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQID 156
+V+ +Q + + + + + KK + V GCV +G +K V +V G Q +
Sbjct: 74 SVREKAQEKVFSDLGRVQHLKKQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLH 133
Query: 157 RVVEVVE----ETLKGHEVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKT 211
R+ ++++ + + ++ +K AL P+V FV I+ GC C++C
Sbjct: 134 RLPDLIKRRRAQGVSQVDISFPEIEKFDALPPPRVDGATAFVSIME---GCSKYCSFCVV 190
Query: 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAI 266
+ RG S + ++ V + GVKEV L ++ AY +G + +LL
Sbjct: 191 PYTRGEEVSRPFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLE-Y 249
Query: 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
V E+P G +R ++P + + + + R P + SFLH+PVQ+GSD VL+ ++
Sbjct: 250 VHEIP--GIERIRYTTSHPKEMTQRM--VDAYARLPKLVSFLHLPVQAGSDRVLAAMKR 304
>gi|410419108|ref|YP_006899557.1| hypothetical protein BN115_1315 [Bordetella bronchiseptica MO149]
gi|408446403|emb|CCJ58071.1| conserved hypothetical protein [Bordetella bronchiseptica MO149]
Length = 475
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 149/299 (49%), Gaps = 27/299 (9%)
Query: 46 SKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTC 104
S G+ + G +Y++TFGC N+ DS+ MA L A G LTDN E+AD+ L NTC
Sbjct: 14 SDAGTPATAAQGLGKLYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTC 73
Query: 105 TVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQID 156
+V+ +Q + + + + + KK + V GCV +G +K V +V G Q +
Sbjct: 74 SVREKAQEKVFSDLGRVQHLKKQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLH 133
Query: 157 RVVEVVE----ETLKGHEVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKT 211
R+ ++++ + + ++ +K AL P+V FV I+ GC C++C
Sbjct: 134 RLPDLIKRRRAQGVSQVDISFPEIEKFDALPPPRVDGATAFVSIME---GCSKYCSFCVV 190
Query: 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAI 266
+ RG S + ++ V + GVKEV L ++ AY +G + +LL
Sbjct: 191 PYTRGEEVSRPFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLE-Y 249
Query: 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
V E+P G +R ++P + + + + R P + SFLH+PVQ+GSD VL+ ++
Sbjct: 250 VHEIP--GIERIRYTTSHPKEMTQRM--VDAYARLPKLVSFLHLPVQAGSDRVLAAMKR 304
>gi|163852619|ref|YP_001640662.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Methylobacterium extorquens PA1]
gi|229890613|sp|A9VYZ9.1|MIAB_METEP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|163664224|gb|ABY31591.1| RNA modification enzyme, MiaB family [Methylobacterium extorquens
PA1]
Length = 446
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 133/276 (48%), Gaps = 23/276 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NTC ++ + + + + +
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
+ K +VVAGCV Q G L V +VG Q R+ +++ ++
Sbjct: 65 RVLKGERAESGHDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+V R ++ GV+E+ L ++ AY + P L ++ L G LR ++
Sbjct: 181 VVDEARRLVEGGVREITLIGQNVNAYHGNGPDGAPATLGHLMDALSAVPGLLRLRYTTSH 240
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P + L IA +P V +LH+PVQSGSD +L
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRIL 274
>gi|94269306|ref|ZP_01291426.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
MLMS-1]
gi|93451266|gb|EAT02157.1| tRNA-i(6)A37 modification enzyme MiaB [delta proteobacterium
MLMS-1]
Length = 446
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 132/286 (46%), Gaps = 36/286 (12%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y++TFGC N+ DSE M L+ Y T EEAD ++NTC+++ + +L+
Sbjct: 4 NLYIETFGCQMNERDSEIMVQLLAHDSYLETSRPEEADCIVVNTCSIRGKAAQKAYSLLG 63
Query: 120 KCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVE-------- 163
KS K+ + V GCV Q G L+++ + +VG Q I R+ E+V
Sbjct: 64 GYKSLKERHPHLVIAVTGCVAQQDGQALLRKMPHLDLVVGPQNIYRLPELVAAARRQAAR 123
Query: 164 ----ETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
E E+ LPA+D +FV I+ GC CTYC H RG
Sbjct: 124 QVATELSPAFEIPPF----LPAIDPAAANPRRFVTIMQ---GCNNFCTYCVVPHTRGREI 176
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGS 275
S E +V VR + A GV+EV L ++ +YG D + P LL +V G
Sbjct: 177 SRKPEDIVAEVRHLAAHGVREVTLLGQNVNSYGLDRPAAEKLPFPALLGKVVEVA---GI 233
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+R ++P + E L L C + H+PVQSGSD VL+
Sbjct: 234 DRVRFTTSHPKDLSEELMAAFARLDKLCPH--FHLPVQSGSDRVLA 277
>gi|425436508|ref|ZP_18816944.1| Ribosomal protein S12 methylthiotransferase rimO [Microcystis
aeruginosa PCC 9432]
gi|389678769|emb|CCH92413.1| Ribosomal protein S12 methylthiotransferase rimO [Microcystis
aeruginosa PCC 9432]
Length = 437
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 140/275 (50%), Gaps = 26/275 (9%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI + GC N+ DSE+M G L+ GY + ++ E AD ++NTC+ +++ + ++ TL+
Sbjct: 6 TIAISHLGCEKNRIDSEHMLGLLAKAGYPVDNDEELADYVIVNTCSFIQAAREESVRTLV 65
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
+ A K ++++GC+ Q +D L EL E V+IVG ++VE+VE G V+ +
Sbjct: 66 -ELAEANKKIIISGCMAQHFQDELLTELPEAVAIVGTGDYQKIVEIVERVETGERVKEVS 124
Query: 176 RKKLPALD--LPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
D LP+ R + V L + GC C +C H RG S ++ES+V R
Sbjct: 125 ADPTFIADENLPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGDQRSRSIESIVAEARQ 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIV-AELPPDGSTMLRIGMTNP---- 285
+ + GV+E+ L S+ T YG D+ L LL A+ ++P +R+ P
Sbjct: 185 LASQGVQELILISQITTNYGLDLYGEPKLAELLRALAEVDIP-----WIRVHYAYPTGLT 239
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P ++E ++E P V +L +P+Q +L
Sbjct: 240 PKVIEAIRE------SPNVLPYLDLPLQHSHPDIL 268
>gi|383784615|ref|YP_005469185.1| tRNA-i(6)A37 modification enzyme [Leptospirillum ferrooxidans C2-3]
gi|383083528|dbj|BAM07055.1| putative tRNA-i(6)A37 modification enzyme [Leptospirillum
ferrooxidans C2-3]
Length = 463
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 141/278 (50%), Gaps = 26/278 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +++TFGC N DSE M+G ++ GY + +A + L+NTCTV+ + + I
Sbjct: 13 KTFFIRTFGCQMNVHDSERMSGLMAEAGYTPVSEASDASVILVNTCTVRDKADQKALSDI 72
Query: 119 AKCKSA-----KKPLVVAGCVPQGSRDLKEL-----EGVSIVGVQQIDRVVEVVEETLKG 168
+ +S + LV+ GC+ + R+ KEL + ++G QI ++ ++E+ +G
Sbjct: 73 GRLRSVAEDGHSRHLVITGCMAE--REGKELFRMVPDADLVMGPSQIRNLIPLLEKVEQG 130
Query: 169 -HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
H+V P + P R + + I GC +C YC RG S T+ +
Sbjct: 131 SHKVMGRDLPPAPLITPPAARPPGIMAYVTIQEGCDKSCAYCVVPATRGPEISRTISDIK 190
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP- 286
V ++ +G +E+ L ++ A+G G +L L+ A+ E+ +G + +R ++P
Sbjct: 191 KEVEQLVREGYREITLLGQNVNAFGIKEGTSLANLMRAL-DEV--EGLSRIRFTTSHPRD 247
Query: 287 ---FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
++ +K++ +V+ H H+P+QSGSDAVL+
Sbjct: 248 MSIDLIRAMKDVKKVMPH------FHLPMQSGSDAVLA 279
>gi|333897101|ref|YP_004470975.1| ribosomal protein S12 methylthiotransferase rimO
[Thermoanaerobacterium xylanolyticum LX-11]
gi|333112366|gb|AEF17303.1| Ribosomal protein S12 methylthiotransferase rimO
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 437
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 140/284 (49%), Gaps = 24/284 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLI---AK 120
+ GC+ N DSE M G + G+ + +N +AD+ +INTC ++S + ++D ++
Sbjct: 8 SLGCAKNIVDSEKMLGIIKKKGFNIVNNENDADVLIINTCGFIESAKRESIDYILEMGKL 67
Query: 121 CKSAKKPLVVAGCVPQGSRD-----LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
K K L+ +GC+ + +D L EL+ V +G ++ +V+E+TLKG R+L
Sbjct: 68 KKKRLKSLIASGCLSERYKDELLESLPELDAV--IGTGDFLKIADVIEDTLKGK--RILE 123
Query: 175 --HRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
H +L D P++ K L I+ GC C++C RG S +E L+ +
Sbjct: 124 YGHANELDDKDSPRILSTPKHYAYLKISEGCNNKCSFCIIPKLRGRYRSVKIEDLLNEAK 183
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ +GVKE+ L ++DT YG DI LP LL + +G +RI P I
Sbjct: 184 MLAENGVKELILIAQDTTKYGIDIYNKYMLPTLLRKLA---NINGIKWIRILYAYPDSIT 240
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSVS 333
+ L I E+ + V ++ +P+Q +D VL ++ K +
Sbjct: 241 DEL--IDEIKTNEKVLKYIDIPLQHSNDEVLRRMKRNTTRKKIE 282
>gi|443323681|ref|ZP_21052685.1| ribosomal protein S12 methylthiotransferase RimO [Gloeocapsa sp.
PCC 73106]
gi|442786663|gb|ELR96392.1| ribosomal protein S12 methylthiotransferase RimO [Gloeocapsa sp.
PCC 73106]
Length = 439
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 135/277 (48%), Gaps = 30/277 (10%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI + GC N+ DSE+M G L GY++ N E AD ++NTC+ ++S + ++ TL+
Sbjct: 6 TIAIAHLGCEKNRIDSEHMLGLLVQAGYSVDTNEEIADYVIVNTCSFIQSAREESVRTLV 65
Query: 119 AKCKSAKKPLVVAGCVPQ--GSRDLKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRL-- 173
+ A K +++AGC+ Q + L+EL E +IVG ++VEVVE G V
Sbjct: 66 -ELAEANKKIIIAGCMAQHFQAELLEELPEARAIVGTGDYQKIVEVVEAVEHGERVEAVS 124
Query: 174 LHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L + +LP+ R + V L + GC +C +C RG S ++ES+V +
Sbjct: 125 LQPTYIADENLPRYRTTTEAVAYLRVAEGCDYSCAFCIIPQLRGKQRSRSIESIVNEAKA 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR-IGMTNPPFILEH 291
+ A GVKE+ L S+ T YG D+ P + +LR +G + P+I H
Sbjct: 185 LAAQGVKELILISQITTNYGLDLYKE-------------PKLAELLRELGKVDVPWIRIH 231
Query: 292 L--------KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
K IA + P + +L +P+Q +L
Sbjct: 232 YAYPTGLTDKVIAAIKETPNILPYLDLPLQHSHPEIL 268
>gi|325847803|ref|ZP_08170025.1| tRNA methylthiotransferase YqeV [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480821|gb|EGC83874.1| tRNA methylthiotransferase YqeV [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 432
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 141/294 (47%), Gaps = 39/294 (13%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
++T +KT GC NQ +SE + G+ +++ ADI++INTCTV + S
Sbjct: 2 SKTFNIKTLGCKVNQYESEAIEELFKKRGFEKKEDN--ADIYVINTCTVTNMSDRKSRQT 59
Query: 118 IAKCKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
I+K + K ++A GC Q D +KE+EGV IV G + + VV++ E + H
Sbjct: 60 ISKARKENKDAIIAVIGCYSQVKGDEVKEIEGVDIVLGSRNKEEVVDLCENFINDH---- 115
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV-------------GCLGACTYCKTKHARGHLGS 220
+ D+ + + + +E L I+ GC C+YC +ARG++ S
Sbjct: 116 -----VKTKDVEEFKIGEAIEDLEISNQADMTRAYIKIQDGCNMYCSYCLIPYARGNIAS 170
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
+ S++ + + +G KE+ L+ +YG+D+ +N+ L++ I DG +R+
Sbjct: 171 RDLVSIIDEAKRLRDNGFKEIVLTGIHVASYGKDLDLNIS-LIDVIEHISKIDGIERIRL 229
Query: 281 GMTNPPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTK 330
P I L+ +K+ + H H+ +QSGSD VL + + TK
Sbjct: 230 SSMEPRHIDREFLQRMKDTKKACDH------FHLSLQSGSDDVLKLMNRKYDTK 277
>gi|425451381|ref|ZP_18831203.1| Ribosomal protein S12 methylthiotransferase rimO [Microcystis
aeruginosa PCC 7941]
gi|389767365|emb|CCI07226.1| Ribosomal protein S12 methylthiotransferase rimO [Microcystis
aeruginosa PCC 7941]
Length = 437
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 140/275 (50%), Gaps = 26/275 (9%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI + GC N+ DSE+M G L+ GY + ++ E AD ++NTC+ +++ + ++ TL+
Sbjct: 6 TIAISHLGCEKNRIDSEHMLGLLAKAGYPVDNDEELADYVIVNTCSFIQAAREESVRTLV 65
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
+ A K ++++GC+ Q +D L EL E V+IVG ++VE+VE G V+ +
Sbjct: 66 -ELAEANKKIIISGCMAQHFQDELLTELPEAVAIVGTGDYQKIVEIVERVETGERVKEVS 124
Query: 176 RKKLPALD--LPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
D LP+ R + V L + GC C +C H RG S ++ES+V R
Sbjct: 125 TDPTFIADENLPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGDQRSRSIESIVAEARQ 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIV-AELPPDGSTMLRIGMTNP---- 285
+ + GV+E+ L S+ T YG D+ L LL A+ ++P +R+ P
Sbjct: 185 LASQGVQELILISQITTNYGLDLYGEPKLAELLRALAEVDIP-----WIRVHYAYPTGLT 239
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P ++E ++E P V +L +P+Q +L
Sbjct: 240 PKVIEAIRE------SPNVLPYLDLPLQHSHPDIL 268
>gi|292670946|ref|ZP_06604372.1| MiaB family RNA modification enzyme [Selenomonas noxia ATCC 43541]
gi|422343709|ref|ZP_16424636.1| MiaB-like tRNA modifying enzyme YliG [Selenomonas noxia F0398]
gi|292647567|gb|EFF65539.1| MiaB family RNA modification enzyme [Selenomonas noxia ATCC 43541]
gi|355378125|gb|EHG25316.1| MiaB-like tRNA modifying enzyme YliG [Selenomonas noxia F0398]
Length = 442
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 135/274 (49%), Gaps = 29/274 (10%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA---- 119
+ GC+ N D+E M G + G +T+ EADI ++NTC ++S + ++ T++
Sbjct: 7 SLGCAKNLVDTEVMLGIMREHGIDITNEPAEADILIVNTCAFIESAKEESITTVLGMADY 66
Query: 120 ----KCKSAKKPLVVAGCVPQ--GSRDLKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+C+S L+VAGC+ Q G + L E+ E +I+G R++EV+EETLKG R
Sbjct: 67 KESGRCRS----LIVAGCLGQRYGQQLLDEIPEANAIIGTGAWSRIMEVIEETLKGR--R 120
Query: 173 LLHRKKLPAL---DLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
LL K + P++R + + I GC C +C RG S +E +V
Sbjct: 121 LLISGKDDTIYDAKTPRLRTTPNYTAYVKIAEGCDHRCAFCAIPLIRGSFRSRVMEDVVA 180
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ A GV+E+ L ++D+ YG D+ LP LL A+ +R+ + P
Sbjct: 181 EAEHLAAQGVRELVLIAQDSANYGLDLYEKPMLPALLRALT---KIKDIAWIRVLYSYPK 237
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ + L E+ P V ++ +P+Q DAVL
Sbjct: 238 YFSDELIEV--FATEPKVVKYVDLPLQHAHDAVL 269
>gi|218248044|ref|YP_002373415.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 8801]
gi|229890509|sp|B7JZ48.1|MIAB_CYAP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218168522|gb|ACK67259.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8801]
Length = 451
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 139/280 (49%), Gaps = 20/280 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 14 HITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 73
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 74 AKRKHENPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVA 133
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC C+YC + RG S T E+++ +
Sbjct: 134 TEPIHIIE-DITKPRRDSTITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAILAEME 191
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G KEV L ++ AYGRD+ G + L + + G +R ++P
Sbjct: 192 LLGKQGYKEVTLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYTVHDVVGIERIRFATSHP 251
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L + L C + H+P QSG + +L ++
Sbjct: 252 RYFTERLIAACQELSKVCEH--FHIPFQSGDNDILKAMKR 289
>gi|293607161|ref|ZP_06689503.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Achromobacter piechaudii
ATCC 43553]
gi|292814495|gb|EFF73634.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Achromobacter piechaudii
ATCC 43553]
Length = 484
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 145/294 (49%), Gaps = 32/294 (10%)
Query: 47 KTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCT 105
+ GS SP+ +Y++TFGC N+ DS+ MA L G LTDN EEAD+ L NTC+
Sbjct: 29 QAGSDSPR-----KLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEEADVILFNTCS 83
Query: 106 VKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDR 157
V+ +Q + + + + + KK + V GCV +G+ +K V +V G Q + R
Sbjct: 84 VREKAQEKVFSDLGRVQHLKKTNPNLVIGVGGCVASQEGAAIVKRAPYVDVVFGPQTLHR 143
Query: 158 VVEVV----EETLKGHEVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTK 212
+ +++ E ++ +K + P+V FV I+ GC C++C
Sbjct: 144 LPDLIARRRAEGRSQVDISFPEIEKFDNMPPPRVEGATAFVSIME---GCSKYCSFCVVP 200
Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRDIGVNLPILLNAIV 267
+ RG S E ++ V + GVKEV L ++ AY G D + +LL V
Sbjct: 201 YTRGEEVSRPFEDVLVEVADLADQGVKEVTLLGQNVNAYRGKMEGTDEIADFAMLLE-YV 259
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
E+P G +R ++P + + + + R P + SFLH+PVQ+GSD VL+
Sbjct: 260 HEIP--GIERIRYTTSHPKEMTQRM--VDAYARLPKLVSFLHLPVQAGSDRVLA 309
>gi|154505306|ref|ZP_02042044.1| hypothetical protein RUMGNA_02820 [Ruminococcus gnavus ATCC 29149]
gi|153794349|gb|EDN76769.1| ribosomal protein S12 methylthiotransferase RimO [Ruminococcus
gnavus ATCC 29149]
Length = 440
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 131/276 (47%), Gaps = 23/276 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA 119
I + GC N D+E M G L++ GY + + +AD+ +INTC V + ++ ++
Sbjct: 3 ILFISLGCDKNLVDTEVMLGMLASRGYQMVEEETQADVIVINTCCFVHDAKEESIQNILE 62
Query: 120 KCKSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVR 172
+ K K L+V GC+ Q R L E+ V +++G D++++ ++E LKGH
Sbjct: 63 MAEYKKEGRLKALIVTGCLAQRYRQEILDEIPEVDAVLGTTAYDKILDAIDEALKGHHTL 122
Query: 173 LLHRKKLPALDLPKVRRNKFVEI------LPINVGCLGACTYCKTKHARGHLGSYTVESL 226
L L LP+V + V L I GC CTYC RG+ S +E L
Sbjct: 123 TLADTDL----LPEVETKRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGNFRSVPMEQL 178
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTNP 285
+ + GVKE+ L +++T YG+D+ L+ ++ EL G +RI P
Sbjct: 179 LSEAEYLAEQGVKELILVAQETTLYGKDLYGEKS--LHKLLRELCKISGIRWIRILYCYP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
I + L I + P + +L +P+Q +D +L
Sbjct: 237 EEIYDEL--IQTIKEEPKICHYLDLPIQHANDEILK 270
>gi|452990394|emb|CCQ98409.1| tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase
[Clostridium ultunense Esp]
Length = 443
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 132/272 (48%), Gaps = 18/272 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D EEAD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNFYETEAIWQLFKNKGYTQVDFEEEADVYVINTCTVTNTGDKKSRQMIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ K+ + V GC Q S + E+ GV IV G Q DR+++ VEE
Sbjct: 63 RAIRKNPNAVVAVTGCYAQTSPAKVLEIPGVDIVIGTQGRDRLLDYVEEYKNSRMPINAV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ +K+ L +P K L I GC CT+C A+G S ES++ +
Sbjct: 123 ANIMKQKEFEELSVPTFS-EKTRAFLKIQEGCNNFCTFCIIPWAKGLSRSRQPESVLQQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
RT+ A+G +E+ L+ TG YG D+ +LP LL + E+ +G +RI I
Sbjct: 182 RTLAANGYREIVLTGIHTGGYGEDLEDYSLPRLLMDL-KEI--EGLHRIRISSIEASQIG 238
Query: 290 EHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVL 320
E E+ EV R +P + LH+P+Q+G D +L
Sbjct: 239 E---EMIEVFRNNPKMCRHLHIPLQAGDDTIL 267
>gi|164688504|ref|ZP_02212532.1| hypothetical protein CLOBAR_02149 [Clostridium bartlettii DSM
16795]
gi|164602917|gb|EDQ96382.1| ribosomal protein S12 methylthiotransferase RimO [Clostridium
bartlettii DSM 16795]
Length = 445
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 139/276 (50%), Gaps = 15/276 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLI- 118
I +++ GCS N D+E M G L+ GY LT N EEAD+ L+NTC ++S Q ++ T++
Sbjct: 4 IALESLGCSKNLVDAEIMMGILNEKGYKLTGNFEEADVILVNTCGFIESAKQESIQTILE 63
Query: 119 -AKCKSAK--KPLVVAGCVPQGSRD-LKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVR 172
A+ K K L+V GC+ Q D LKE E +IVG + E++ E + H++
Sbjct: 64 FAELKETANLKLLIVTGCLAQRYADELKEEIPEIDAIVGTGSYQNIDEILAELSEKHQIV 123
Query: 173 LLHRKKLPALD--LPK-VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
L+ + A D LP+ V + L I GC CTYC RG S +E ++
Sbjct: 124 SLNNIEF-AYDENLPRYVSTPSHMAYLKIGEGCDNKCTYCIIPKLRGKYRSRKMEDIIAE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ + GVKE+ + ++DT YG D+ L N + +G +R+ + P I
Sbjct: 183 AKKLAERGVKELVVIAQDTTKYGLDL-YGEEKLANLLEELAQIEGFKWIRVMYSYPESIT 241
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
E L ++ + + C ++ +P+Q S+ VL + +
Sbjct: 242 EELVKVIKKYDNIC--NYFDMPIQHASNRVLKLMNR 275
>gi|428310522|ref|YP_007121499.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Microcoleus sp. PCC 7113]
gi|428252134|gb|AFZ18093.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Microcoleus sp. PCC 7113]
Length = 447
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 30/280 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ TFGC N++DSE MAG L G+ + + +A++ L NTCT++ ++ + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSQDPNDANLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 120 ---KCKSAKKPLVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K + A LVVAGCV Q R + EL+ V +G Q +R+ +++E+ G++V
Sbjct: 69 AKRKHEQADLTLVVAGCVAQQEGEALLRRVPELDLV--MGPQHANRLQDLLEQVFDGNQV 126
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
++ D+ K RR+ V +NV GC CTYC + RG S T E++
Sbjct: 127 VATEPIQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRKD 184
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIG 281
+ + G KE+ L ++ AYGRD+ G +L L + V ++P G +R
Sbjct: 185 MEELGQQGYKEITLLGQNIDAYGRDLPGVTESGRHLHTLTELLYYVHDVP--GIERIRFA 242
Query: 282 MTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
++P + E L + AE+ P V H+P QSG + +L
Sbjct: 243 TSHPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDIL 279
>gi|294142164|ref|YP_003558142.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella violacea DSS12]
gi|293328633|dbj|BAJ03364.1| tRNA-i(6)A37 modification enzyme MiaB [Shewanella violacea DSS12]
Length = 474
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 145/279 (51%), Gaps = 20/279 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KT+GC N+ DS MA + + GY LTDN+EEAD+ L+NTC+++ +Q +
Sbjct: 2 SKKLHIKTWGCQMNEYDSSKMADLMDEYKGYTLTDNAEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP-QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKG 168
+ + K K + V GCV Q + +KE I G Q + R+ E+V++ +G
Sbjct: 62 QLGRWKKLKDKNPNLIIGVGGCVASQEGKMIKERAKCVDIIFGPQTLHRLPEMVDQVKQG 121
Query: 169 HEVRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+ + + ++ D LP+ R + + I GC C++C + RG S V+ +
Sbjct: 122 GKAVIDISFPEIEKFDRLPEPRADGPTAFVSIMEGCSKYCSFCVVPYTRGEEVSRPVDDV 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ V + GV+EV L ++ A+ D + L +A++ DG +R +
Sbjct: 182 ILEVAQLAEQGVREVNLLGQNVNAFRGATHDDDICTFAELLRYIADI--DGIDRVRFTTS 239
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLS 321
+P +E ++I +V P + SFLH+PVQSGSD +L+
Sbjct: 240 HP---IEFSQDIIDVYEDTPELVSFLHLPVQSGSDHILT 275
>gi|255100347|ref|ZP_05329324.1| radical SAM-superfamily protein [Clostridium difficile QCD-63q42]
gi|255306284|ref|ZP_05350455.1| radical SAM-superfamily protein [Clostridium difficile ATCC 43255]
gi|423087677|ref|ZP_17076063.1| ribosomal protein S12 methylthiotransferase RimO [Clostridium
difficile 050-P50-2011]
gi|357543991|gb|EHJ25997.1| ribosomal protein S12 methylthiotransferase RimO [Clostridium
difficile 050-P50-2011]
Length = 444
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 143/276 (51%), Gaps = 15/276 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLIA 119
I +++ GCS N D+E M G L+ GY L + EEAD+ ++NTC ++S Q ++DT+I
Sbjct: 4 IALESLGCSKNLVDAEIMMGILNNKGYKLIGDFEEADVIIVNTCGFIESAKQESIDTIIN 63
Query: 120 KCKSAK----KPLVVAGCVPQG-SRDLK-EL-EGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+ K K L+V GC+ Q S +LK E+ E +IVG + ++++E + H++
Sbjct: 64 FAELKKTGNLKLLIVTGCLAQRYSEELKTEIPEIDAIVGTGSYQNIDKILKELSEMHQIV 123
Query: 173 LLHRKKLPA-LDLPK-VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
L+ + DLP+ + ++ L I GC CTYC RG S E ++
Sbjct: 124 SLNDIEFVFNEDLPRYISTPSYMAYLKIGEGCSNNCTYCIIPKLRGKYRSRKFEDIIKEA 183
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ + GVKE+ + ++DT YG D+ G L +A++ DG +R+ + P I
Sbjct: 184 KKLAESGVKELVVIAQDTTKYGFDLYGKERLSELLEELAKI--DGFKWIRVMYSYPESIT 241
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
E L ++ + + C S+ +P+Q S+ +L + +
Sbjct: 242 EELIQVIKKYDNIC--SYFDMPIQHASNNILKLMNR 275
>gi|331085298|ref|ZP_08334384.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330408081|gb|EGG87571.1| ribosomal protein S12 methylthiotransferase rimO [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 440
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 135/276 (48%), Gaps = 25/276 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA 119
I + GC N D+E M G L++ GY + ++ EADI +INTC + + ++ T++
Sbjct: 3 ILFVSLGCDKNLVDTEVMLGMLASRGYQMVEDESEADIIVINTCCFIHDAKEESIQTILE 62
Query: 120 KCKSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVR 172
+ K K L+V GC+ Q + + E+ V +++G D++++ V+E L+GH
Sbjct: 63 MSELKKEGRLKALIVTGCLAQRYQQEIIDEIPEVDAVLGTTSYDKILDAVDEALEGH--- 119
Query: 173 LLHRKKLPALD-LPKVRRNKFVEI------LPINVGCLGACTYCKTKHARGHLGSYTVES 225
H K+ +D LP V + V L I GC CTYC RG+ S +E
Sbjct: 120 --HYLKMTDIDALPTVDSKRLVTTGGHFAYLKIAEGCDKHCTYCIIPKIRGNFRSVPMEQ 177
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTN 284
LV + GVKE+ L +++T YG+D+ L+ ++ EL G +R+
Sbjct: 178 LVREAEELAEQGVKELILVAQETTLYGKDLYGEKS--LHKLLKELCKIAGIRWIRVLYCY 235
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
P I + L ++ + C Y L +P+Q SD +L
Sbjct: 236 PEEITDELIQVMKEESKICHY--LDLPIQHASDGIL 269
>gi|322379427|ref|ZP_08053797.1| conserved hypothetical ATP-binding protein [Helicobacter suis HS1]
gi|322380962|ref|ZP_08055028.1| MiaB-like protein [Helicobacter suis HS5]
gi|321146634|gb|EFX41468.1| MiaB-like protein [Helicobacter suis HS5]
gi|321148136|gb|EFX42666.1| conserved hypothetical ATP-binding protein [Helicobacter suis HS1]
Length = 435
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 134/274 (48%), Gaps = 9/274 (3%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
+ +Y++T GC+ N DS+++ G+LS GY ++EAD+ LINTC+V+ + + +
Sbjct: 3 NQKVYIETMGCAMNTRDSQHLIGELSKIGYVEVKEAKEADLILINTCSVREKPERKLFSE 62
Query: 118 IAKCKSAKKP---LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
I + KKP + V GC G + L++ V V G + + ++ ++++ K E+
Sbjct: 63 IGQFAKIKKPNAKIGVCGCSASHMGVQILQKAPSVDFVLGARNVSKITDIIKRE-KAVEI 121
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L H + + K +L I++GC CTYC H RG S ++ ++
Sbjct: 122 SLDHDDSTYVFNTHAPSQIK--ALLNISIGCDKHCTYCIVPHTRGKEISIPMDLILKEAE 179
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+ GVKE+ L ++ YG + P + + + E + RI T+P +
Sbjct: 180 KLTKQGVKEILLLGQNVNNYGVRFSIKHPKVNFSALLENLSQIEGLKRIRFTSPHPLHMD 239
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ R+P V +H+P+QSGS+A+L ++
Sbjct: 240 NAFLECFARNPKVCKSIHIPLQSGSNAILKAMKR 273
>gi|260914514|ref|ZP_05920983.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pasteurella dagmatis ATCC
43325]
gi|260631615|gb|EEX49797.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pasteurella dagmatis ATCC
43325]
Length = 474
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 142/286 (49%), Gaps = 26/286 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S G LTD EEAD+ L+NTC+++ +Q +
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLNSTHGLELTDIPEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K KK + V GCV +G V I+ G Q + R+ E++ + G
Sbjct: 62 QLGRWKELKKHKPGLVIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMINQIRGG 121
Query: 169 H----EVRLLHRKKLPALDLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+V +K L P+ FV I+ GC C++C + RG S V
Sbjct: 122 KSSVVDVSFPEIEKFDRLPEPRAEGPTAFVSIME---GCNKYCSFCVVPYTRGEEVSRPV 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRI 280
+ ++ + + GV+EV L ++ AY D G+ L +VA + DG LR
Sbjct: 179 DDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDDGICTFAELLRLVAAI--DGIDRLRF 236
Query: 281 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
++P +E +I +V R P + SFLH+PVQSGSD VLS+ ++
Sbjct: 237 TTSHP---IEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLSMMKR 279
>gi|455641583|gb|EMF20754.1| tRNA-i(6)A37 methylthiotransferase [Citrobacter freundii GTC 09479]
Length = 476
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 144/285 (50%), Gaps = 28/285 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L A GY LTD +EEAD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K K+ + V GCV +G + V I+ G Q + R+ E++ + ++G
Sbjct: 62 QLGRWKLLKEKNPKLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINK-VRG 120
Query: 169 HEVRL----LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
R + ++ D LP+ R + I GC CTYC + RG S
Sbjct: 121 STTRSPVVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCNKYCTYCVVPYTRGEEVSRPA 180
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGA-----YGRDIGVNLPILLNAIVAELPPDGSTML 278
+ ++ + + A GV+EV L ++ A Y IG + LL + A DG +
Sbjct: 181 DDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTIG-SFADLLRLVAA---IDGIDRI 236
Query: 279 RIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSV 322
R ++P +E +I EV R P + SFLH+PVQSGSD VL++
Sbjct: 237 RFTTSHP---IEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNL 278
>gi|238752614|ref|ZP_04614087.1| hypothetical protein yrohd0001_990 [Yersinia rohdei ATCC 43380]
gi|238709205|gb|EEQ01450.1| hypothetical protein yrohd0001_990 [Yersinia rohdei ATCC 43380]
Length = 478
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 144/285 (50%), Gaps = 24/285 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LT+N EEAD+ L+NTC+++ +Q + +
Sbjct: 6 TKKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTENPEEADLLLLNTCSIREKAQEKVFS 65
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ K K+ + V GCV +G + V +V G Q + R+ E++
Sbjct: 66 LLGHWKLLKEKNPELIIGVGGCVASQEGEHLRQRAPCVDVVFGPQTLHRLPEMINHVQGS 125
Query: 169 HE-VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
H + + ++ D LP+ R + I GC CT+C + RG S + +
Sbjct: 126 HSPIVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSDDI 185
Query: 227 VGRVRTVIADGVKEVWLSSEDTGA-----YGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
+ + + A GV+EV L ++ A Y DI + LL + A DG +R
Sbjct: 186 LFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDI-CSFAELLRLVAA---IDGIDRVRFT 241
Query: 282 MTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
++P +E +I +V R P + SFLH+PVQSGSD +L++ ++
Sbjct: 242 TSHP---IEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKR 283
>gi|224582505|ref|YP_002636303.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|224467032|gb|ACN44862.1| MiaB protein (putative tRNA-thiotransferase (or
tRNA-methylthiotransferase)) [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
Length = 488
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 142/279 (50%), Gaps = 18/279 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L A GY LTD +EEAD+ L+NTC+++ +Q +
Sbjct: 16 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 75
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + + K+ + V GCV +G + V I+ G Q + R+ E++ +++G
Sbjct: 76 QLGRWRLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMI-NSVRG 134
Query: 169 HE--VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
V + ++ D LP+ R + I GC CTYC + RG S +
Sbjct: 135 DRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDD 194
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
++ + + A GV+EV L ++ A+ G + I + + DG +R ++
Sbjct: 195 ILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGIFADLLRLVAAIDGIDRIRFTTSH 254
Query: 285 PPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSV 322
P +E +I EV R P + SFLH+PVQSGSD VL++
Sbjct: 255 P---IEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNL 290
>gi|124026430|ref|YP_001015545.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str.
NATL1A]
gi|229890598|sp|A2C471.1|MIAB_PROM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123961498|gb|ABM76281.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str.
NATL1A]
Length = 463
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 137/295 (46%), Gaps = 25/295 (8%)
Query: 44 HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT 103
L KT K P + ++ TFGC N++DSE M+G L GY + +AD+ L NT
Sbjct: 5 QLQKTNQPPVKAPRG-SYWITTFGCQMNKADSERMSGILEYMGYYPAEEELKADLVLYNT 63
Query: 104 CTVKSPSQSAMDTLIAKCKSAKKPL-----VVAGCVPQ--GSRDLKELEGVS-IVGVQQI 155
CT++ ++ + + + + K+ L VVAGC+ Q G L+ + + ++G Q
Sbjct: 64 CTIRDSAEQKVYSYLGRQAIRKRSLPNLKIVVAGCLAQQEGESLLRRVPEIDLLMGPQHC 123
Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHA 214
+R+ ++ + G +V L ++ D+ RR+ F + I GC CTYC
Sbjct: 124 NRLESLLNQVDSGQQV-LATEEQFILEDITTPRRDSSFCGWVNIIYGCNERCTYCVVPSV 182
Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---------GVNLPILLNA 265
RG S T E++ V + G KE+ L ++ AYGRD + L LL
Sbjct: 183 RGKEQSRTPEAIKSEVEDLAKSGYKEITLLGQNIDAYGRDFQSQNKEASAQITLSYLLKY 242
Query: 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
I +G +R ++P + + L + L P V H+P QSGS+ +L
Sbjct: 243 I---HDIEGIERIRFATSHPRYFTKELIDTCSEL--PKVCEHFHIPFQSGSNKIL 292
>gi|238755076|ref|ZP_04616424.1| hypothetical protein yruck0001_21560 [Yersinia ruckeri ATCC 29473]
gi|238706780|gb|EEP99149.1| hypothetical protein yruck0001_21560 [Yersinia ruckeri ATCC 29473]
Length = 474
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 141/290 (48%), Gaps = 34/290 (11%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LTD EEAD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLASTHGYELTDVPEEADLLLLNTCSIREKAQEKVFA 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ + K K + V GCV +G + V ++ G Q + R+ E++ L
Sbjct: 62 LLGRWKQLKATNPQLVIGVGGCVASQEGDHIRQRAPCVDVIFGPQTLHRLPEMLNHVLGT 121
Query: 169 H---------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
H E+ R P D P FV I+ GC CT+C + RG
Sbjct: 122 HSPIVDISFPEIEKFDRLPEPRADGP----TAFVSIME---GCNKYCTFCVVPYTRGEEV 174
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGST 276
S V+ ++ + + A GV+EV L ++ AY D + L +VA + DG
Sbjct: 175 SRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGATYDGDICRFAELLRLVAAI--DGID 232
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSVSQK 325
+R ++P +E +I V P + SFLH+PVQSGSD +L++ ++
Sbjct: 233 RIRFTTSHP---IEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKR 279
>gi|395227372|ref|ZP_10405698.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Citrobacter sp. A1]
gi|421843452|ref|ZP_16276612.1| tRNA-i(6)A37 methylthiotransferase [Citrobacter freundii ATCC 8090
= MTCC 1658]
gi|424728924|ref|ZP_18157529.1| adenosine trna methylthiotransferase miab [Citrobacter sp. L17]
gi|394718700|gb|EJF24321.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Citrobacter sp. A1]
gi|411775173|gb|EKS58619.1| tRNA-i(6)A37 methylthiotransferase [Citrobacter freundii ATCC 8090
= MTCC 1658]
gi|422896795|gb|EKU36577.1| adenosine trna methylthiotransferase miab [Citrobacter sp. L17]
Length = 476
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 144/285 (50%), Gaps = 28/285 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L A GY LTD +EEAD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K K+ + V GCV +G + V I+ G Q + R+ E++ + ++G
Sbjct: 62 QLGRWKLLKEKNPKLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINK-VRG 120
Query: 169 HEVRL----LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
R + ++ D LP+ R + I GC CTYC + RG S
Sbjct: 121 STTRSPVVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCNKYCTYCVVPYTRGEEVSRPA 180
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGA-----YGRDIGVNLPILLNAIVAELPPDGSTML 278
+ ++ + + A GV+EV L ++ A Y IG + LL + A DG +
Sbjct: 181 DDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTIG-SFADLLRLVAA---IDGIDRI 236
Query: 279 RIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSV 322
R ++P +E +I EV R P + SFLH+PVQSGSD VL++
Sbjct: 237 RFTTSHP---IEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNL 278
>gi|334340539|ref|YP_004545519.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum ruminis
DSM 2154]
gi|334091893|gb|AEG60233.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum ruminis
DSM 2154]
Length = 449
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 136/269 (50%), Gaps = 17/269 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA---KC 121
TFGC N+ DSE ++G L GY+ T++ E+ADI ++NTC V+ ++S + L+ K
Sbjct: 12 TFGCQMNERDSESLSGMLEDLGYSPTESQEDADIIILNTCCVRETAESKVFGLLGRLRKR 71
Query: 122 KSAKKPLV--VAGCVPQGSRDLKELEG----VSIV----GVQQIDRVVEVVEETLKGHEV 171
K+A L+ V GC+ Q K + V ++ V ++ R+++ V+E K +
Sbjct: 72 KTANPNLIIGVCGCMTQQEDAAKRIRHSFPFVDLIFGTHNVHELPRMLQQVQEN-KEAVL 130
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ +K A D+P R++K + I GC C+YC + RG S E + ++
Sbjct: 131 EIWTSEKGIAEDVPVRRKDKLKAWVTIMYGCNNFCSYCIVPYVRGRERSRKPEDIFKEIK 190
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ +G KEV L ++ +YG+D+ N + ++ +G +R ++P
Sbjct: 191 ELVKEGYKEVTLLGQNVNSYGKDLE-NTYRFADLLLDLDQIEGLERIRFMTSHPRDFDRR 249
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L ++ R C + H+PVQ+GS+ VL
Sbjct: 250 LIQVIASCRKVCEH--YHLPVQAGSNRVL 276
>gi|320528896|ref|ZP_08029988.1| MiaB-like tRNA modifying enzyme YliG [Selenomonas artemidis F0399]
gi|320138526|gb|EFW30416.1| MiaB-like tRNA modifying enzyme YliG [Selenomonas artemidis F0399]
Length = 442
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 134/270 (49%), Gaps = 21/270 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA---- 119
+ GC+ N D+E M G + G LT EADI ++NTC ++S + ++ T++
Sbjct: 7 SLGCAKNLVDTEVMLGIMREHGIELTAEPAEADILIVNTCAFIQSAKEESITTVLGMADY 66
Query: 120 ----KCKSAKKPLVVAGCVPQ--GSRDLKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+C+S L+VAGC+ Q G + L E+ E +I+G R++EVVEETLKG +
Sbjct: 67 KETGRCRS----LIVAGCLGQRYGQQLLDEIPEANAIIGTGAWSRIMEVVEETLKGRRLV 122
Query: 173 LL-HRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + + P++R + + I GC C +C RG S +E +V
Sbjct: 123 IAGEDDTIYDANTPRLRTTPNYTAYVKIAEGCDHRCAFCAIPLIRGGFRSRAMEDIVSEA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + GV+E+ L ++D+ YG D+ P+L + + + + +R+ + P + +
Sbjct: 183 RELAESGVRELVLIAQDSANYGLDL-YRKPMLASLLRELAKIEKISWIRVLYSYPKYFSD 241
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L E+ P V ++ +P+Q DAVL
Sbjct: 242 ELIEVFAT--EPKVVKYVDLPLQHAHDAVL 269
>gi|257060632|ref|YP_003138520.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 8802]
gi|256590798|gb|ACV01685.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8802]
Length = 446
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 139/280 (49%), Gaps = 20/280 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 69 AKRKHENPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC C+YC + RG S T E+++ +
Sbjct: 129 TEPIHIIE-DITKPRRDSTITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAILAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G KEV L ++ AYGRD+ G + L + + G +R ++P
Sbjct: 187 LLGKQGYKEVTLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYTVHDVVGIERIRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L + L C + H+P QSG + +L ++
Sbjct: 247 RYFTERLIAACQELSKVCEH--FHIPFQSGDNDILKAMKR 284
>gi|310659093|ref|YP_003936814.1| conserved protein of unknown function [[Clostridium] sticklandii]
gi|308825871|emb|CBH21909.1| conserved protein of unknown function [[Clostridium] sticklandii]
Length = 454
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 133/268 (49%), Gaps = 21/268 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ +++ M GY +TD AD+++INTCTV S S +I + K
Sbjct: 29 TLGCKVNQYETDAMEHLFRDAGYEVTDFESFADVYVINTCTVTSMSDKKSRQMIRRAKKH 88
Query: 125 KKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE-TLKGHEVR---LLHR 176
+ ++A GC Q S D + +EGV++V G +++V VE+ +K H V ++ +
Sbjct: 89 NENAIIAVVGCYSQKSPDEVIAIEGVNLVMGTSDRNKIVTEVEKLDVKDHVVEVEDIMKQ 148
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ AL + + K L I GC C+YC + RG + S ++ ++ V+++ +
Sbjct: 149 RVFEALSIEET-YGKTRAFLKIQEGCDRFCSYCIIPYTRGPVRSRSINDIISEVKSLAKN 207
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI----LEHL 292
G KEV L+ +YG+D+G L++ I A DG +R P I L L
Sbjct: 208 GYKEVVLTGIHVASYGKDLGD--IRLIDVIKAINNIDGIHRIRTSSVEPLIITDDFLSEL 265
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
KEI + H H+ +QSGSD+VL
Sbjct: 266 KEIDKFCPH------FHLSLQSGSDSVL 287
>gi|319764320|ref|YP_004128257.1| tRNA-i(6)a37 thiotransferase enzyme miab [Alicycliphilus
denitrificans BC]
gi|330826382|ref|YP_004389685.1| MiaB family RNA modification protein [Alicycliphilus denitrificans
K601]
gi|317118881|gb|ADV01370.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alicycliphilus
denitrificans BC]
gi|329311754|gb|AEB86169.1| RNA modification enzyme, MiaB family [Alicycliphilus denitrificans
K601]
Length = 449
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 139/282 (49%), Gaps = 19/282 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KTFGC N+ DS MA L +A Y TDN EEAD+ L NTC+V+ +Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSAKMADVLGAAQDYQSTDNPEEADLILFNTCSVREKAQEKVFS 61
Query: 117 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ + K K+ V V GCV +G +K V +V G Q + R+ E++ K H+
Sbjct: 62 DLGRVKHLKEKGVLIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPELLSAREKQHK 121
Query: 171 VRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
++ + ++ D LP R + I GC C+YC + RG S E ++
Sbjct: 122 PQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLV 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMT 283
V + GVKEV L ++ AY +G + +LL VAE+P G +R +
Sbjct: 182 EVAGLADQGVKEVTLLGQNVNAYLGTMGDTAEKADFALLLE-YVAEIP--GIERIRYTTS 238
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+P L I R P + S LH+PVQ GSD +L ++
Sbjct: 239 HPNEFTPRL--IEAYARIPKLVSHLHLPVQHGSDRILMAMKR 278
>gi|160933105|ref|ZP_02080494.1| hypothetical protein CLOLEP_01948 [Clostridium leptum DSM 753]
gi|156868179|gb|EDO61551.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium leptum DSM
753]
Length = 459
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 131/272 (48%), Gaps = 20/272 (7%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N SD E + G L G+ T++ EEAD L NTC ++ ++ + + K
Sbjct: 29 VRTYGCQQNVSDGEKIKGMLQQMGFGFTEDQEEADFILFNTCAIREHAEDRIFGNVGALK 88
Query: 123 SAKK---PLVVA--GCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
K+ L++A GC+ + R K VS+V G + ++V ETL G + R
Sbjct: 89 YLKRRNPSLIIALCGCMMEQEHVVERIRKSYPFVSLVFGTHSLSSFPQLVYETLTGAK-R 147
Query: 173 LLHRKKLPALD--LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ R +D +P R +F LP+ GC C+YC + RG S E+++
Sbjct: 148 VFQRGGEDTIDENIPVRRDGRFKAWLPVMYGCDNFCSYCVVPYVRGRERSREPEAVLKEA 207
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R +I G K++ L ++ +YG+++ VN LL I +G LR ++P
Sbjct: 208 RQLIEGGYKDITLLGQNVNSYGKNLPEPVNFAKLLKEIS---DMEGDYWLRFMTSHPKDC 264
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ L ++ H + LH+P QSG++ VL
Sbjct: 265 TKELIDVMASSGH--IAKHLHLPFQSGNNRVL 294
>gi|374327055|ref|YP_005085255.1| MiaB family RNA modification protein [Pyrobaculum sp. 1860]
gi|356642324|gb|AET33003.1| RNA modification enzyme, MiaB family [Pyrobaculum sp. 1860]
Length = 417
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 130/268 (48%), Gaps = 32/268 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GC ++D+E + +L G D+ EAD+ LI TC V+ + I +
Sbjct: 5 YVETYGCWLAKADAEIIRQRL---GLTPVDSLREADVVLIYTCAVREDGEVRQLARIREL 61
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE-ETLKGHEVRLLHRKKLP 180
++ L+VAGC L L +I ++ E E +G E+++L R
Sbjct: 62 AASGGRLIVAGC-------LARLRPYTIKSAAPHAELIYPGEVEGGRGREMKILPRYS-- 112
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADG 237
+ +P+ VGCLG C +C TK RG G S + +V V+ + G
Sbjct: 113 ---------GGVIYTVPLQVGCLGNCAFCATKFTRGGAGYVKSADPDDVVRHVKEAVGRG 163
Query: 238 VKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+E++L+ +D YG D+ G LP +L I+ E+ +G +RIGM+ P +
Sbjct: 164 AREIFLTGQDVITYGFDMRWKPGWTLPDILERILKEV--EGEYRIRIGMSEPWVFEKFAD 221
Query: 294 EIAEVLRHPC-VYSFLHVPVQSGSDAVL 320
+ +V++ VY + H+PVQSGSD VL
Sbjct: 222 RLLDVVKSDGRVYRYFHLPVQSGSDRVL 249
>gi|412339409|ref|YP_006968164.1| hypothetical protein BN112_2102 [Bordetella bronchiseptica 253]
gi|408769243|emb|CCJ54019.1| conserved hypothetical protein [Bordetella bronchiseptica 253]
Length = 475
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 149/299 (49%), Gaps = 27/299 (9%)
Query: 46 SKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTC 104
S G+ + G +Y++TFGC N+ DS+ MA L A G LTDN E+AD+ L NTC
Sbjct: 14 SDAGTPATAAQGLGKLYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTC 73
Query: 105 TVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQID 156
+V+ +Q + + + + + KK + V GCV +G +K V +V G Q +
Sbjct: 74 SVREKAQEKVFSDLGRVQHLKKQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLH 133
Query: 157 RVVEVVE----ETLKGHEVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKT 211
R+ ++++ + + ++ +K AL P++ FV I+ GC C++C
Sbjct: 134 RLPDLIKRRRAQGVSQVDISFPEIEKFDALPPPRIDGATAFVSIME---GCSKYCSFCVV 190
Query: 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAI 266
+ RG S + ++ V + GVKEV L ++ AY +G + +LL
Sbjct: 191 PYTRGEEVSRPFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLE-Y 249
Query: 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
V E+P G +R ++P + + + + R P + SFLH+PVQ+GSD VL+ ++
Sbjct: 250 VHEIP--GIERIRYTTSHPKEMTQRM--VDAYARLPKLVSFLHLPVQAGSDRVLAAMKR 304
>gi|365105334|ref|ZP_09334581.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Citrobacter freundii 4_7_47CFAA]
gi|363643349|gb|EHL82667.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Citrobacter freundii 4_7_47CFAA]
Length = 476
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 144/285 (50%), Gaps = 28/285 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L A GY LTD +EEAD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K K+ + V GCV +G + V I+ G Q + R+ E++ + ++G
Sbjct: 62 QLGRWKLLKEKNPKLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINK-VRG 120
Query: 169 HEVRL----LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
R + ++ D LP+ R + I GC CTYC + RG S
Sbjct: 121 STTRSPVVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCNKYCTYCVVPYTRGEEVSRPA 180
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGA-----YGRDIGVNLPILLNAIVAELPPDGSTML 278
+ ++ + + A GV+EV L ++ A Y IG + LL + A DG +
Sbjct: 181 DDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTIG-SFADLLRLVAA---IDGIDRI 236
Query: 279 RIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSV 322
R ++P +E +I EV R P + SFLH+PVQSGSD VL++
Sbjct: 237 RFTTSHP---IEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNL 278
>gi|295696216|ref|YP_003589454.1| MiaB-like tRNA modifying protein YliG [Kyrpidia tusciae DSM 2912]
gi|295411818|gb|ADG06310.1| MiaB-like tRNA modifying enzyme YliG [Kyrpidia tusciae DSM 2912]
Length = 442
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 25/281 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLIA 119
I + T GC NQ DSE M G + +G+ L + +EAD+ ++NTC V +++T++
Sbjct: 5 IAVVTLGCEKNQVDSEVMMGLMERWGFDLVADPQEADVIVVNTCGFVDQAKAESVNTILQ 64
Query: 120 KCKSAK----KPLVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKG-H 169
+ + K LVVAGC+ Q R++ E++G ++G + RV EVVE+ L G H
Sbjct: 65 MAQYKENGHCKALVVAGCLAQRYQEELMREIPEIDG--MLGTGEFHRVPEVVEQALAGRH 122
Query: 170 EVRLLHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+R + L P+ R + + I GC CT+C RG S + S+V
Sbjct: 123 PMRFGNPVYLYDEVTPRKRVGLPYSSYVKIAEGCDHGCTFCAIPLMRGKFRSRPIPSIVE 182
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
R + ADGV+E+ L ++D+ YG D+ LP LL A+ V EL +R+
Sbjct: 183 EARRLAADGVREISLIAQDSTQYGLDLYGRRRLPDLLKALNDVDEL-----RWIRLHYAY 237
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
P + + L + L P V ++ +P+Q D +L +
Sbjct: 238 PGYFTDELIDAMAGL--PKVCKYVDLPLQHSEDEILRAMHR 276
>gi|328944037|ref|ZP_08241502.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
gi|327492006|gb|EGF23780.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
Length = 460
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 136/280 (48%), Gaps = 17/280 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS----AM 114
+T +KTFGC N DSE +AG L G EEADI + TC+V+ + + A+
Sbjct: 15 KTYLIKTFGCQMNLHDSERVAGLLDDCGANEVATFEEADIVIFMTCSVREKADTHLYGAV 74
Query: 115 DTLIAKCKS--AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
L+ S K+ + V GC+ Q G++ + + V +V G + V E++ E + +
Sbjct: 75 SNLVTLPPSPCGKRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLCEAFESN 134
Query: 170 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+ V + + + + DLP R F +PI GC CT+C + RG S +E
Sbjct: 135 DDEVFVDTIEKNRGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVRGRERSRVLER 194
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V VR + DGV+EV L ++ +YGRD+ P ++ ++ G +R +NP
Sbjct: 195 VVDEVRRLKDDGVREVTLLGQNVNSYGRDL-YKKPCFAE-LLRKVGEVGIERIRFTSSNP 252
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ + + IA + P V LH+ VQSGS +L +
Sbjct: 253 KDLSD--ETIAAMAETPAVMPQLHLAVQSGSTRILKAMHR 290
>gi|81301321|ref|YP_401529.1| hypothetical protein Synpcc7942_2512 [Synechococcus elongatus PCC
7942]
gi|81323650|sp|Q935Y2.1|RIMO_SYNE7 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
Short=S12 MTTase; Short=S12 methylthiotransferase;
AltName: Full=Ribosome maturation factor RimO
gi|15620542|gb|AAL03926.1|U30252_14 unknown [Synechococcus elongatus PCC 7942]
gi|81170202|gb|ABB58542.1| Protein of unknown function UPF0004 [Synechococcus elongatus PCC
7942]
Length = 452
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 141/281 (50%), Gaps = 28/281 (9%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI GC N+ D+E+M G L+ GY + N AD+ ++NTC+ +++ + ++ TL+
Sbjct: 6 TIAFSHLGCEKNRIDTEHMIGLLAEAGYGIDANEALADVVVVNTCSFIQAAREESVRTLV 65
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
+S KK +V+AGC+ Q +D L EL E +++VG R+V+V++ T G V +
Sbjct: 66 ELAESGKK-IVIAGCLAQHFQDQLLAELPEAIALVGTGDYHRIVDVLQRTESGERVNAIS 124
Query: 176 RKK--LPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ + +LP+ R V L + GC C +C H RG S ++ES+V +
Sbjct: 125 QEPSFIADENLPRYRTTTSAVAYLRVAEGCDYRCAFCIIPHLRGKQRSRSIESIVAEAKQ 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ A+GV+E+ L S+ T YG D P+L AEL + ++G + P+I H
Sbjct: 185 LAAEGVQELVLISQITTNYGLD-RYGKPML-----AEL------LRQLGQVDVPWIRIHY 232
Query: 293 --------KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ IA + V +L +P+Q +L +
Sbjct: 233 AYPTGLTPEVIAAIRETHNVLPYLDLPLQHSHPEILKAMNR 273
>gi|160939106|ref|ZP_02086457.1| hypothetical protein CLOBOL_04000 [Clostridium bolteae ATCC
BAA-613]
gi|158438069|gb|EDP15829.1| hypothetical protein CLOBOL_04000 [Clostridium bolteae ATCC
BAA-613]
Length = 459
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 133/275 (48%), Gaps = 20/275 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA 119
++ + GC N D+E M G L+ G TD+ EAD+ L+NTC + + +++T++
Sbjct: 14 LFCVSLGCDKNLVDTEKMLGLLNGRGITFTDDETEADVILVNTCCFIGDAKEESVNTILD 73
Query: 120 KCKSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHE-V 171
+ + K L+VAGC+ Q + L E+ V +I+G + V +V++E L G
Sbjct: 74 MARYKEEGNLKALLVAGCLAQRYKQEILDEIPEVDAILGTTSYEEVAKVLDEVLAGRTGT 133
Query: 172 RLLHRKKLPALDLPKVRR----NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
L L L +VRR L I GC CTYC + RG S +E LV
Sbjct: 134 HLSCFHDLSELPQTEVRRVVTTGGHYAFLKIAEGCDKRCTYCIIPYLRGPYRSVPIEQLV 193
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNP 285
R + GVKE+ L +++T YGRD+ LP LL + A++P G +RI P
Sbjct: 194 KEARQLAEAGVKELILVAQETTLYGRDLYGEKCLPRLLREL-AKIP--GIYWIRIQYCYP 250
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
I + L E C ++L +P+Q SD +L
Sbjct: 251 EEITDELIETIRTEEKVC--NYLDIPIQHASDRIL 283
>gi|390438621|ref|ZP_10227071.1| Ribosomal protein S12 methylthiotransferase rimO [Microcystis sp.
T1-4]
gi|389837952|emb|CCI31195.1| Ribosomal protein S12 methylthiotransferase rimO [Microcystis sp.
T1-4]
Length = 437
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 137/282 (48%), Gaps = 30/282 (10%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI + GC N+ DSE+M G L+ GY + ++ E AD ++NTC+ +++ + ++ TL+
Sbjct: 6 TIAISHLGCEKNRIDSEHMLGLLAKAGYPVDNDEELADYVIVNTCSFIQAAREESVRTLV 65
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
+ A K ++++GC+ Q +D L EL E V+IVG ++VE+VE G V+ +
Sbjct: 66 -ELAEANKKIIISGCMAQHFQDELLTELPEAVAIVGTGDYQKIVEIVERVETGERVKEVS 124
Query: 176 RKKLPALD--LPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
D LP+ R + V L + GC C +C H RG S ++ES+V R
Sbjct: 125 TDPTFIADENLPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGDQRSRSIESIVAEARQ 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR-IGMTNPPFILEH 291
+ + GV+E+ L S+ T YG D+ P + +LR +G + P+I H
Sbjct: 185 LASQGVQELILISQITTNYGLDLYGE-------------PKLAELLRALGEVDIPWIRVH 231
Query: 292 L--------KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
K I + P V +L +P+Q +L +
Sbjct: 232 YAYPTGLTPKVIEAIRETPNVLPYLDLPLQHSHPDILRAMNR 273
>gi|146297053|ref|YP_001180824.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|229890495|sp|A4XL48.1|MIAB_CALS8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|145410629|gb|ABP67633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 471
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 146/307 (47%), Gaps = 26/307 (8%)
Query: 28 GVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY 87
G ++ + +++ + K G +T ++ T+GC N DSE +AG L+A GY
Sbjct: 12 GTQAQFIEEIEKMNSEYYFKNGK-------NKTYHIITYGCQMNVHDSEKLAGMLNAMGY 64
Query: 88 ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK--SAKKPLV---VAGCVPQGSRDLK 142
T N EEAD+ + NTC V+ ++S + I K KKP + V GC+PQ +
Sbjct: 65 VETQNLEEADLIIFNTCAVREHAESRVYGNIGPLKRLKDKKPELIIGVCGCMPQQLEVAQ 124
Query: 143 ELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVRLLHRKKLPALDLPKVRRNKFVEI 195
+L V I G + + + +++ + T K + + + + +P RR
Sbjct: 125 KLAKVFPFLDIIFGTKSLHKFPQLLYKAITTKKTVIDVAEDEDVVVEGIPTARREGVSAF 184
Query: 196 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 255
+ I GC C+YC + RG S E ++ ++ + A+GVKEV L ++ +YG+D+
Sbjct: 185 VNIIYGCNNFCSYCIVPYVRGRERSRRPEEIIFEIQQLAANGVKEVTLLGQNVNSYGKDL 244
Query: 256 GVNLPI--LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
+P LL + A +G +R ++P + + L L C + +H+PVQ
Sbjct: 245 PDGIPFYKLLEKVNA---IEGIERIRFVTSHPKDLSDELIFAMRDLEKVCEH--IHLPVQ 299
Query: 314 SGSDAVL 320
SGS +L
Sbjct: 300 SGSTRIL 306
>gi|313895534|ref|ZP_07829090.1| ribosomal protein S12 methylthiotransferase RimO [Selenomonas sp.
oral taxon 137 str. F0430]
gi|312975660|gb|EFR41119.1| ribosomal protein S12 methylthiotransferase RimO [Selenomonas sp.
oral taxon 137 str. F0430]
Length = 442
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 134/270 (49%), Gaps = 21/270 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA---- 119
+ GC+ N D+E M G + G LT EADI ++NTC ++S + ++ T++
Sbjct: 7 SLGCAKNLVDTEVMLGIMREHGIELTAEPAEADILIVNTCAFIQSAKEESITTVLGMADY 66
Query: 120 ----KCKSAKKPLVVAGCVPQ--GSRDLKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+C+S L+VAGC+ Q G + L E+ E +I+G R++EVVEETLKG +
Sbjct: 67 KETGRCRS----LIVAGCLGQRYGQQLLDEIPEANAIIGTGAWSRIMEVVEETLKGRRLV 122
Query: 173 LL-HRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + + P++R + + I GC C +C RG S +E +V
Sbjct: 123 IAGEDDTIYDANTPRLRTTPNYTAYVKIAEGCDHRCAFCAIPLIRGGFRSRAMEDIVSEA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + GV+E+ L ++D+ YG D+ P+L + + + + +R+ + P + +
Sbjct: 183 RELAESGVRELVLIAQDSANYGLDL-YRKPMLASLLRELAKIEKISWIRVLYSYPKYFSD 241
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L E+ P V ++ +P+Q DAVL
Sbjct: 242 ELIEVFAT--EPKVVKYVDLPLQHAHDAVL 269
>gi|282600854|ref|ZP_05979919.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Subdoligranulum variabile
DSM 15176]
gi|282571154|gb|EFB76689.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Subdoligranulum variabile
DSM 15176]
Length = 447
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 135/274 (49%), Gaps = 19/274 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++++GC N +D E + G L G+ + D E+AD+ L NTC V+ ++ + I
Sbjct: 13 FVRSYGCQQNVNDGEKIRGVLQDVGFGICDTLEDADLILFNTCAVREHAEQRVFGNIGAL 72
Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEV 171
K K+ + V GC+ Q +++L + GV IDR+ ++ E L+ +
Sbjct: 73 KKLKEQNPRLIIGVCGCMAQQPHIVEKLRQSYPYVDLVFGVDGIDRLPAMLAERLRRGKR 132
Query: 172 RLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
L ++ A+ ++P R + F LPI GC CTYC + RG S ++++
Sbjct: 133 YLETPEQRNAVVEEMPIRRDSGFRAWLPIMYGCDNFCTYCIVPYVRGRERSREPDAILAE 192
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R +I G KE+ L ++ +YG+ +G ++ LLN + A +P G +R ++P
Sbjct: 193 FRDLITKGYKEITLLGQNVNSYGKGLGNPIDFADLLNLLCA-VP--GDYQIRFMTSHPKD 249
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
L + H C + +H+PVQSGS+ +L
Sbjct: 250 ASRKLIDTIAAQPHMCKH--IHLPVQSGSNRLLQ 281
>gi|423090914|ref|ZP_17079200.1| ribosomal protein S12 methylthiotransferase RimO [Clostridium
difficile 70-100-2010]
gi|357556029|gb|EHJ37651.1| ribosomal protein S12 methylthiotransferase RimO [Clostridium
difficile 70-100-2010]
Length = 444
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 141/280 (50%), Gaps = 23/280 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC-TVKSPSQSAMDTLIA 119
I +++ GCS N D+E M G L+ GY L + EEAD+ ++NTC ++S Q ++DT+I
Sbjct: 4 IALESLGCSKNLVDAEIMMGILNNKGYKLIGDFEEADVIIVNTCGFIESAKQESIDTIIN 63
Query: 120 KCKSAK----KPLVVAGCVPQG-SRDLK----ELEGVSIVG-VQQIDRVVEVVEETLK-- 167
+ K K L+V GC+ Q S +LK E++ + G Q ID++++ + E K
Sbjct: 64 FAELKKTGNLKLLIVTGCLAQRYSEELKTEIPEIDAIVGTGSYQNIDKILKELSEMHKIV 123
Query: 168 -GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+++ + + LP + ++ L I GC CTYC RG S E +
Sbjct: 124 SLNDIEFVFNEDLPRY----ISTPSYMAYLKIGEGCSNNCTYCIIPKLRGKYRSRKFEDI 179
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ + + GVKE+ + ++DT YG D+ G L +A++ DG +R+ + P
Sbjct: 180 IKEAKKLAESGVKELVVIAQDTTKYGFDLYGKERLSELLEELAKI--DGFKWIRVMYSYP 237
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
I E L ++ + + C S+ +P+Q S+ +L + +
Sbjct: 238 ESITEELIQVIKKYDNIC--SYFDMPIQHASNNILKLMNR 275
>gi|340750584|ref|ZP_08687423.1| MiaB-like tRNA modifying enzyme YliG [Fusobacterium mortiferum ATCC
9817]
gi|229420211|gb|EEO35258.1| MiaB-like tRNA modifying enzyme YliG [Fusobacterium mortiferum ATCC
9817]
Length = 445
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 137/270 (50%), Gaps = 20/270 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFG-YALTDNSEEADIWLINTC-TVKSPSQSAMDTLIAKCK 122
+ GCS N DSE+ G LS LT EADI ++NTC + + +++T++ +
Sbjct: 7 SLGCSKNLVDSEHYLGILSKRKEMELTSELSEADIVIVNTCGFIGDAKEESIETILEVSE 66
Query: 123 SAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLLH 175
+ K L+VAGC+ Q + LKEL V +++G ID++ +VV+E L+ +V +
Sbjct: 67 FKETGNLKKLIVAGCLAQKYSEEILKELPEVDAVIGTGDIDKIEKVVDEILENKKV--VE 124
Query: 176 RKKLPALDLPKVRR----NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
K + L R L I+ GC ACTYC RG L S ++E +V +
Sbjct: 125 TKNMTFLANANTERVLTTASHTAYLKISEGCNRACTYCIIPQMRGRLRSRSIEDIVEEAK 184
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTNPPFILE 290
++A GV+E+ L +++T YG D+ + L A++ EL +G LR +P ++ +
Sbjct: 185 RLVASGVREINLLAQETTEYGIDLYGDKK--LAALMKELCKIEGLKWLRTYYMHPEYVTD 242
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L E+ + C Y VP+Q SD +L
Sbjct: 243 ELIEVMKSEEKICKY--FDVPIQHVSDNIL 270
>gi|33595815|ref|NP_883458.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
parapertussis 12822]
gi|81429531|sp|Q7WB66.1|MIAB_BORPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|33565894|emb|CAE36442.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 475
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 149/299 (49%), Gaps = 27/299 (9%)
Query: 46 SKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTC 104
S G+ + G +Y++TFGC N+ DS+ MA L A G LTDN E+AD+ L NTC
Sbjct: 14 SDAGTPATTAQGLGKLYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTC 73
Query: 105 TVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQID 156
+V+ +Q + + + + + KK + V GCV +G +K V +V G Q +
Sbjct: 74 SVREKAQEKVFSDLGRVQHLKKQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLH 133
Query: 157 RVVEVVE----ETLKGHEVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKT 211
R+ ++++ + + ++ +K AL P+V FV I+ GC C++C
Sbjct: 134 RLPDLIKRRRAQGVSQVDISFPEIEKFDALPPPRVDGATAFVSIME---GCSKYCSFCVV 190
Query: 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAI 266
+ RG S + ++ + + GVKEV L ++ AY +G + +LL
Sbjct: 191 PYTRGEEVSRPFDDVLLEIADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLE-Y 249
Query: 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
V E+P G +R ++P + + + + R P + SFLH+PVQ+GSD VL+ ++
Sbjct: 250 VHEIP--GIERIRYTTSHPKEMTQRM--VDAYARLPKLVSFLHLPVQAGSDRVLAAMKR 304
>gi|238066628|sp|Q5N1N6.2|RIMO_SYNP6 RecName: Full=Ribosomal protein S12 methylthiotransferase RimO;
Short=S12 MTTase; Short=S12 methylthiotransferase;
AltName: Full=Ribosome maturation factor RimO
Length = 452
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 141/281 (50%), Gaps = 28/281 (9%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI GC N+ D+E+M G L+ GY + N AD+ ++NTC+ +++ + ++ TL+
Sbjct: 6 TIAFSHLGCEKNRIDTEHMIGLLAEAGYGIDANEALADVVVVNTCSFIQAAREESVRTLV 65
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
+S KK +V+AGC+ Q +D L EL E +++VG R+V+V++ T G V +
Sbjct: 66 ELAESGKK-IVIAGCLAQHFQDQLLAELPEAIALVGTGDYHRIVDVLQRTESGERVNAIS 124
Query: 176 RKK--LPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ + +LP+ R V L + GC C +C H RG S ++ES+V +
Sbjct: 125 QEPSFIADENLPRYRTTTSAVAYLRVAEGCDYRCAFCIIPHLRGKRRSRSIESIVAEAKQ 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ A+GV+E+ L S+ T YG D P+L AEL + ++G + P+I H
Sbjct: 185 LAAEGVQELVLISQITTNYGLD-RYGKPML-----AEL------LRQLGQVDVPWIRIHY 232
Query: 293 --------KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ IA + V +L +P+Q +L +
Sbjct: 233 AYPTGLTPEVIAAIRETHNVLPYLDLPLQHSHPEILKAMNR 273
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,474,512,144
Number of Sequences: 23463169
Number of extensions: 233718150
Number of successful extensions: 583720
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7138
Number of HSP's successfully gapped in prelim test: 1036
Number of HSP's that attempted gapping in prelim test: 561695
Number of HSP's gapped (non-prelim): 8747
length of query: 334
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 191
effective length of database: 9,003,962,200
effective search space: 1719756780200
effective search space used: 1719756780200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)