BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019874
(334 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P4Y0|CDKAL_XENTR Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus
tropicalis GN=cdkal1 PE=2 SV=1
Length = 553
Score = 349 bits (896), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 178/329 (54%), Positives = 234/329 (71%), Gaps = 20/329 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPI--NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
++DIED+++ + P R N V K NKNK + + T IPGT
Sbjct: 9 LDDIEDIVSATD---PKPHDRQNARQNIVPRARKRNKNKIQEEEPPADST------IPGT 59
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ I+++T+GCSHN SD EYMAGQL+A+GY++T+ E+AD+WL+N+CTVKSP++ I
Sbjct: 60 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEQADLWLLNSCTVKSPAEDHFRNSI 119
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K + A K +V++GCVPQ + ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 120 KKAQEANKKVVLSGCVPQAQPRQEYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 179
Query: 179 L-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV R
Sbjct: 180 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRAA 239
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 240 QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEH 297
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 298 LEEMAKILNHPRVYAFLHIPVQSASDSVL 326
>sp|Q6NS26|CDKAL_XENLA Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus
laevis GN=cdkal1 PE=2 SV=1
Length = 556
Score = 348 bits (892), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 178/329 (54%), Positives = 232/329 (70%), Gaps = 20/329 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPI--NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
++DIED+++ + P R N V K NKN + + T IPGT
Sbjct: 9 LDDIEDMVSATD---PKPHDRQSARKNIVPRARKRNKNNIQEEEPPADST------IPGT 59
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ I+++T+GCSHN SD EYMAGQL+A+GY++T+ E+AD+WL+N+CTVKSP++ I
Sbjct: 60 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEKADLWLLNSCTVKSPAEDHFRNSI 119
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K + A K +VV+GCVPQ ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 120 KKAQEANKKVVVSGCVPQAQPRQDYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 179
Query: 179 L-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV R
Sbjct: 180 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRAT 239
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 240 QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEH 297
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
L+E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 298 LEEMAKILNHPRVYAFLHIPVQSASDSVL 326
>sp|Q5VV42|CDKAL_HUMAN Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Homo
sapiens GN=CDKAL1 PE=1 SV=1
Length = 579
Score = 347 bits (889), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 231/327 (70%), Gaps = 13/327 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVL 330
>sp|Q91WE6|CDKAL_MOUSE Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Mus
musculus GN=Cdkal1 PE=2 SV=1
Length = 578
Score = 343 bits (880), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 231/327 (70%), Gaps = 14/327 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRQF----SRKHVFPKVRRRNTQKYLQEEPRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A++L HP VY+FLH+PVQS SD+VL
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVL 329
>sp|Q6PG34|CDKAL_DANRE Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Danio
rerio GN=cdkal1 PE=2 SV=1
Length = 547
Score = 339 bits (869), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 161/291 (55%), Positives = 209/291 (71%), Gaps = 9/291 (3%)
Query: 37 KPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEA 96
+ R H + IPG + +++KT+GCSHN SD EYMAGQL+ GY +T++S +A
Sbjct: 37 RARKHKQETGEQMQTDSVIPGMQKVWLKTWGCSHNSSDGEYMAGQLAVAGYQITEDSSDA 96
Query: 97 DIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQID 156
D+WL+N+CTVKSP++ I K + K +V+AGCVPQ + ++ +SI+GVQQID
Sbjct: 97 DLWLLNSCTVKSPAEDHFRNAIRKAQEQNKKVVLAGCVPQAQPRMDYIKDLSIIGVQQID 156
Query: 157 RVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYC 209
RVVEVV+E +KGH VRLL +KK LDLPK+R+N +EI+ IN GCL ACTYC
Sbjct: 157 RVVEVVDEAIKGHSVRLLGQKKEKGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYC 216
Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269
KTKHARG L SY VE LV RVR +GV E+WL+SEDTGAYGRDIG +LP LL +V E
Sbjct: 217 KTKHARGDLASYPVEELVERVRQSFQEGVCEIWLTSEDTGAYGRDIGSDLPTLLWRLVEE 276
Query: 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+P MLR+GMTNPP+ILEHL+E++ +L+HP V+SFLHVP+QS SD+VL
Sbjct: 277 IPE--GAMLRLGMTNPPYILEHLEEMSRILQHPRVFSFLHVPLQSASDSVL 325
>sp|Q291H5|CDKAL_DROPS Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Drosophila
pseudoobscura pseudoobscura GN=GA19679 PE=3 SV=1
Length = 553
Score = 337 bits (865), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 166/273 (60%), Positives = 205/273 (75%), Gaps = 10/273 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ +EAD+WL+N+CTVK+PS+
Sbjct: 68 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKDEADLWLLNSCTVKNPSEDTF 126
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 127 RNEIESGMSNGKHIVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 186
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V
Sbjct: 187 QNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 246
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 247 DRARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPPY 304
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL
Sbjct: 305 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVL 337
>sp|Q7K4W1|CDKAL_DROME Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Drosophila
melanogaster GN=CG6550 PE=2 SV=1
Length = 552
Score = 332 bits (852), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 166/274 (60%), Positives = 202/274 (73%), Gaps = 11/274 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ EEAD+WL+N+CTVK+PS+
Sbjct: 67 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GKEEADLWLLNSCTVKNPSEDTF 125
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH V+LL
Sbjct: 126 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVQLL 185
Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
KK L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +
Sbjct: 186 QNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 245
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP
Sbjct: 246 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 303
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ILEHL+E+A VL+HP VYSFLHVPVQSGSD+VL
Sbjct: 304 YILEHLEEVANVLQHPRVYSFLHVPVQSGSDSVL 337
>sp|Q8MXQ7|CDKAL_CAEEL Threonylcarbamoyladenosine tRNA methylthiotransferase
OS=Caenorhabditis elegans GN=Y92H12BL.1 PE=3 SV=2
Length = 425
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/194 (60%), Positives = 150/194 (77%), Gaps = 4/194 (2%)
Query: 130 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVR 188
+AGCV Q + L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R + A L LPK+R
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDAVLSLPKMR 60
Query: 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSED 247
+N+ +E+L I+ GCL CTYCKTK ARG L SY + LV + R D GVKE+WL+SED
Sbjct: 61 KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHDEGVKELWLTSED 120
Query: 248 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307
GA+GRDIG+ LP LL +V ++ PDGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLRELV-KVIPDGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178
Query: 308 LHVPVQSGSDAVLS 321
LH+PVQS SDAVL+
Sbjct: 179 LHIPVQSASDAVLN 192
>sp|O59545|AMTAB_PYRHO Probable threonylcarbamoyladenosine tRNA methylthiotransferase
OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428
/ JCM 9974 / NBRC 100139 / OT-3) GN=PH1875 PE=3 SV=2
Length = 425
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 161/263 (61%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N++D E MA L G+ + ++ EE++I ++N+C VK P++ + I +
Sbjct: 4 VYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
K ++V GC+P + D+ + +I+GV+ IDR+V+ VE ++G + V ++
Sbjct: 64 LLDNGKKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPDWKKR 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LD P++ ILPI GCL ACTYC T+ ARG L SY+ E ++G V+ I G
Sbjct: 124 NLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIKQG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL L++ I A +G +R+GM NP +L+ L E+ +
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLIDEITA---IEGEFRIRVGMMNPNHVLKFLDELID 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ VY FLH+PVQSG + +L
Sbjct: 241 AYKDEKVYKFLHLPVQSGDNEIL 263
>sp|Q9UXX9|AMTAB_PYRAB Probable threonylcarbamoyladenosine tRNA methylthiotransferase
OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB17290
PE=3 SV=1
Length = 425
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 159/263 (60%), Gaps = 6/263 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++ +GC+ N++D E MA L G+ + + +E +I ++N+C VK P++ + I +
Sbjct: 4 IYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++V GC+P + D+ + I+GV+ IDR+++ VE L+G + V ++
Sbjct: 64 LLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPDWRKR 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LD P++ I+PI GCL ACTYC T+ ARG L SY+ E +VG V+ I G
Sbjct: 124 NLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRVRVGMMNPNHVLKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVL 320
+ +Y FLH+PVQSG + +L
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNDIL 263
>sp|O26914|AMTAB_METTH Probable threonylcarbamoyladenosine tRNA methylthiotransferase
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=MTH_826 PE=3 SV=1
Length = 424
Score = 175 bits (444), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/267 (38%), Positives = 156/267 (58%), Gaps = 12/267 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++TFGC+ NQ+DSE MAG L G LT ++AD+ +INTC VK P++ + I K
Sbjct: 6 VYIETFGCTFNQADSEIMAGVLREEGAVLT-GIDDADVIIINTCYVKHPTEHKVINRIKK 64
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 174
+ +K LVVAGC+ + D +LE +S +G Q+ R + V G R+
Sbjct: 65 IQETYPEKGLVVAGCMVEI--DPSKLEAISGDASWLGPHQLRRAPQAVRAASNGLVERIT 122
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ +P+VR N + I+PI GC G+C+YC T+ ARG + SY + ++ R +
Sbjct: 123 GFTSDVKVKVPRVRSNPLIHIIPICEGCNGSCSYCCTRFARGRIQSYPSDLIISEAREAV 182
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
A G +E+ L+++DT AYG D G L ++ I + +P G+ +R+GM +P +L L
Sbjct: 183 ASGCREIQLTAQDTAAYGVDTGEKLSDIIKGI-SGIP--GNFRIRVGMMHPASVLRDLDG 239
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ E + VYSFLH+PVQSGSD+VL+
Sbjct: 240 LVEAFKSEKVYSFLHLPVQSGSDSVLA 266
>sp|Q58277|AMTAB_METJA Probable threonylcarbamoyladenosine tRNA methylthiotransferase
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0867
PE=3 SV=1
Length = 427
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 146/268 (54%), Gaps = 17/268 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC N +D+E + L G+ + +N EEADI +INTC V+ +++ M I +
Sbjct: 14 VYVEGYGCVLNTADTEIIKNSLKKHGFEVVNNLEEADIAIINTCVVRLETENRMIYRINE 73
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K+ K +VVAGC+P+ ++ +++G + ++ + E+++ ++ H +R
Sbjct: 74 LKNLGKEVVVAGCLPKALKN--KVKGFLHIYPREAHKAGEILKNYVEKH-----YRMPYI 126
Query: 181 ALDLPKVRRNKF-------VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
D+ K K + LPI GC+G C+YC K ARG L SY E +V + + +
Sbjct: 127 EEDINKTLYKKLDYLKPSLITPLPICEGCIGNCSYCIVKIARGGLISYPREKIVNKAKEL 186
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I G K + ++++DT YG DIG NL LLN + G ++R+GM + L
Sbjct: 187 INKGAKCLLITAQDTACYGFDIGDNLANLLNELT---QIKGEFIMRVGMMHAKNAELILD 243
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
E+ EV ++ V FLH+P+QSG D +L
Sbjct: 244 ELIEVYQNEKVGKFLHLPLQSGDDEILK 271
>sp|O29021|AMTAB_ARCFU Probable threonylcarbamoyladenosine tRNA methylthiotransferase
OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 /
DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1247 PE=3 SV=2
Length = 424
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 148/265 (55%), Gaps = 13/265 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ ++T+GC+ NQ+DS+ M G LS G + E+A++ +IN+C V ++ + +
Sbjct: 3 VAIETYGCTTNQADSDIMRGFLS--GEFELSSVEDAEVVIINSCGVIDFTERKIIRRMLD 60
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH----EVRLLHR 176
K K +V+AGC+ + S++ + S + +D VV+ V L G E R + +
Sbjct: 61 LKREGKKVVLAGCLTRISKEALSVAD-SALSPDNLDMVVDAVYSALNGRKLFTERRFIDK 119
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ L ++R N + I+ I+ GCLG C++C TK ARG L S++++++V +
Sbjct: 120 AEFSHLKC-RLRENA-IAIVSISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRA 177
Query: 237 GVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G +E+ L+S+DTGAYG D G LP LL I +E+ +G +R+GM NP + L E+
Sbjct: 178 GYREIQLTSQDTGAYGMDKGRAMLPELLRKI-SEI--EGEFRVRVGMMNPQHAVRMLDEL 234
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVL 320
+Y FLH+PVQSG + +L
Sbjct: 235 INAYSSEKIYKFLHIPVQSGDNRIL 259
>sp|Q7NE65|MIAB_GLOVI (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Gloeobacter violaceus (strain PCC 7421) GN=miaB PE=3
SV=1
Length = 441
Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 143/275 (52%), Gaps = 17/275 (6%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P +T + TFGC N++DSE MAG L+ GY + D S+ AD+ L NTCT++ ++ +
Sbjct: 7 PQGKTACLVTFGCQMNKADSERMAGALTHLGYRIVDESDTADLVLFNTCTIRDNAEQKVY 66
Query: 116 TLIAKCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
+ + + K+ LV+AGCV Q G + L+ + + +V G Q ++R+ +++E +
Sbjct: 67 SYLGQQARRKQRDPHITLVLAGCVAQQEGEKLLRRVPELDLVMGPQHVNRLSDLLERVAE 126
Query: 168 GHEVRLLHRKKLPAL-DLPKVRRNKFVEILP-INVGCLGACTYCKTKHARGHLGSYTVES 225
G +V + + + L D+ K RR+ V I GC CTYC RG S T E+
Sbjct: 127 GEQV--VATEPIEILEDITKPRRDSAVTAWANIIYGCNEGCTYCIVPSVRGREQSRTPEA 184
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ + + A G KEV L ++ AYGRDIG NL LL + P G LR ++P
Sbjct: 185 IKAEICELGASGYKEVTLLGQNIDAYGRDIGTNLASLLR-FIHNAP--GIERLRFATSHP 241
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ + L IA P V H+P QSG + VL
Sbjct: 242 RYFSDEL--IATCAELPKVCEHFHIPFQSGDNEVL 274
>sp|B2V930|MIAB_SULSY (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=miaB
PE=3 SV=1
Length = 437
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 145/279 (51%), Gaps = 20/279 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y+KTFGC N +DSE MAG L GY T+N EEAD+ L+NTC+V+ + + + +
Sbjct: 3 FYIKTFGCQMNVNDSEKMAGILQTLGYTPTENWEEADVILVNTCSVREKPDQKVLSALGE 62
Query: 121 CKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-V 171
K KK + V GC+ Q G ++ + IV G I + ++EE G++ +
Sbjct: 63 FKKVKKHNPNAVIGVCGCLAQRAGYEIYQKAPFIDIVFGTTNIHHLPNLLEEAKSGNKAI 122
Query: 172 RLLHR--KKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+L + LD P VR NK+ + + GC CTYC RG S + ++
Sbjct: 123 EILEEIDENENLLDQFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGRERSRRIGDILR 182
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V+ ++ DGVKE+ L ++ AYG+D G V LL A VAE+ DG +R +P
Sbjct: 183 EVQYLVEDGVKEIHLIGQNVTAYGKDFGDVKFWELLKA-VAEV--DGVERIRFTTGHPRD 239
Query: 288 ILEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E +K +A++ P + LH+P+Q+GSD +L +
Sbjct: 240 LDEDTIKVMADL---PQICEALHLPIQAGSDRILQAMDR 275
>sp|Q2JQX6|MIAB_SYNJA (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Synechococcus sp. (strain JA-3-3Ab) GN=miaB PE=3 SV=1
Length = 453
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 141/273 (51%), Gaps = 19/273 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL-- 117
T Y TFGC N++DSE MAG L + GY ++ +AD+ L NTCT++ ++ + +
Sbjct: 5 TYYTITFGCQMNRADSERMAGILESLGYVPAEDELQADLVLFNTCTIRDNAEQKVYSYLG 64
Query: 118 IAKCKSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
I + K P L+VAGCV Q G R L+ + + +V G Q ++R+ +++ + G++V
Sbjct: 65 IQAQRKRKNPAIKLIVAGCVAQQEGERLLRRVPELDLVMGPQYVNRLGDLLAQVEAGNQV 124
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
++P D+ K RR+ V INV GC CTYC RG S +++
Sbjct: 125 VATEPVEIPE-DITKPRRDSRVTAW-INVIYGCNERCTYCIVPLVRGREQSRQPQAIRAE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+ V G +EV L ++ AYGRD+ NL LL + + +G +R ++P +
Sbjct: 183 IEDVARAGYREVTLLGQNIDAYGRDLDPKTNLASLLRFVHS---VEGIERIRFATSHPRY 239
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E L IA P V H+P Q+GSDAVL
Sbjct: 240 FTEEL--IATCAELPKVCEHFHIPFQAGSDAVL 270
>sp|B1L8F3|MIAB_THESQ (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Thermotoga sp. (strain RQ2) GN=miaB PE=3 SV=1
Length = 443
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-AMDTL-- 117
Y+KTFGC N++DSE MAG L G+ EEAD+ +INTC V+ S+ A L
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 118 IAKCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
+ K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVLKVTEAVKRALQGEKVALFE 122
Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H + +LP++R +K + I GC CTYC + RG S +E ++ VR +
Sbjct: 123 DHLDEYTH-ELPRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVREL 181
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSDE 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L E+ + R+P V +H+PVQSGS+ +L + +
Sbjct: 239 LIEV--IARNPKVAKSVHLPVQSGSNRILKLMNR 270
>sp|A5IJD4|MIAB_THEP1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 /
DSM 13995) GN=miaB PE=3 SV=1
Length = 443
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-AMDTL-- 117
Y+KTFGC N++DSE MAG L G+ EEAD+ +INTC V+ S+ A L
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 118 IAKCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
+ K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVLKVTEAVKRALQGEKVALFE 122
Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H + +LP++R +K + I GC CTYC + RG S +E ++ VR +
Sbjct: 123 DHLDEYTH-ELPRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVREL 181
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSDE 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L E+ + R+P V +H+PVQSGS+ +L + +
Sbjct: 239 LIEV--IARNPKVAKSVHLPVQSGSNRILKLMNR 270
>sp|Q65JE5|MIAB_BACLD (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580)
GN=miaB PE=3 SV=1
Length = 509
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 141/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD++E+A++ L+NTC ++ +++ + I
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDSTEDANVILLNTCAIRENAENKVFGEIGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKDNPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRTGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS VL +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSDVLKL 338
>sp|Q2JKY0|MIAB_SYNJB (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=miaB
PE=3 SV=1
Length = 444
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 140/273 (51%), Gaps = 19/273 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL-- 117
T Y TFGC N++D+E MAG L + GY T++ +AD+ L NTCT++ ++ + +
Sbjct: 5 TYYTITFGCQMNRADTERMAGILESLGYVATEDELQADLVLYNTCTIRDNAEQKVYSYLG 64
Query: 118 IAKCKSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
I + K P L+VAGCV Q G + L+ + + +V G Q ++R+ +++ + G++V
Sbjct: 65 IQAQRKRKNPAIKLIVAGCVAQQEGEKLLRRVPELDLVMGPQYVNRLGDLLAQVEAGNQV 124
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
++P D+ K RR+ V INV GC CTYC RG S +++
Sbjct: 125 VATDPVEIPE-DITKPRRDSQVTAW-INVIYGCNERCTYCIVPRVRGQEQSRQPQAIRAE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+ V G +EV L ++ AYGRD+ NL LL + + +G +R ++P +
Sbjct: 183 IEDVARAGYREVTLLGQNIDAYGRDLDPKTNLASLLRFVHS---VEGIERIRFATSHPRY 239
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E L I P V H+P Q+GS+ VL
Sbjct: 240 FTEEL--ITTCAELPKVCEHFHIPFQAGSNEVL 270
>sp|Q4L5Z6|MIAB_STAHJ (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=miaB
PE=3 SV=1
Length = 514
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 138/275 (50%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY T++ EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALGYTATEDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPEALIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + DG KE+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 EEVRGLARDGYKEITLLGQNVNSYGKDIK-DLEYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++AVL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKI 340
>sp|P73127|MIAB_SYNY3 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=miaB
PE=3 SV=1
Length = 451
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 139/279 (49%), Gaps = 24/279 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DSE MAG L G TD+ +AD+ L NTC+++ ++ + + + +
Sbjct: 12 TFGCQMNKADSERMAGILENLGMTYTDDPNQADLVLYNTCSIRDNAEQKVYSYLGRQAKR 71
Query: 125 KK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---RL 173
K+ LVVAGCV Q G + L+ + + +V G Q +R+ +++E+ G +V
Sbjct: 72 KQVEPELTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDQLLEQVWAGSQVVATES 131
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LH + D+ K RR V + I GC C+YC + RG S T E++ G +
Sbjct: 132 LHIME----DITKPRRESTVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYGEMEV 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ G KEV L ++ AYGRD+ G +L L + + +G LR ++P
Sbjct: 188 LAQQGFKEVTLLGQNIDAYGRDLPGTTPSGRHLHTLTDLLYHVHDIEGIDRLRFATSHPR 247
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
+ E L + + L P V H+P QSG + +L ++
Sbjct: 248 YFTERLIQACQEL--PKVCEHFHIPFQSGDNDILKAMKR 284
>sp|Q5L0E8|MIAB_GEOKA (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Geobacillus kaustophilus (strain HTA426) GN=miaB PE=3
SV=1
Length = 531
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 135/274 (49%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD EEA++ L+NTC ++ +++ + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGELGY 141
Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q + LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS +L +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKM 352
>sp|A7Z4X2|MIAB_BACA2 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus amyloliquefaciens (strain FZB42) GN=miaB
PE=3 SV=1
Length = 509
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 140/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS A+L +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKM 338
>sp|Q49X85|MIAB_STAS1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=miaB PE=3 SV=1
Length = 513
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 135/276 (48%), Gaps = 15/276 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +KT+GC N D+E MAG L A GY T++ AD+ LINTC ++ +++ + + I
Sbjct: 67 KTFLIKTYGCQMNAHDTEVMAGILGALGYTPTEDINHADVILINTCAIRENAENKVFSEI 126
Query: 119 AKCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL-- 166
K KK + V GC+ Q ++ LK + V I G I R+ E++EE
Sbjct: 127 GNLKHLKKEKPETVIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLS 186
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
K V + ++ +LPKVR + I GC CTYC RG S E +
Sbjct: 187 KAMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDI 246
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ VR + G KE+ L ++ AYG+DI L L ++ ++ +R ++P
Sbjct: 247 IDEVRDLARQGYKEITLLGQNVNAYGKDID-GLAYGLGDLLEDISKIDIPRVRFTTSHPW 305
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + +H+PVQSG++AVL +
Sbjct: 306 DFTDRMIEV--IANGGNIVPHVHLPVQSGNNAVLKI 339
>sp|B7GJM6|MIAB_ANOFW (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1)
GN=miaB PE=3 SV=1
Length = 527
Score = 117 bits (294), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 136/274 (49%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 86 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 145
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q ++ LK+ + V I G I R+ +++E E
Sbjct: 146 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKEAYMSKE 205
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 206 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 265
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 266 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 324
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS VL +
Sbjct: 325 DDRLIEV--LAKGGNLVEHIHLPVQSGSSEVLKM 356
>sp|Q732V4|MIAB_BACC1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus (strain ATCC 10987) GN=miaB PE=3 SV=1
Length = 509
Score = 117 bits (294), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>sp|B7HLA6|MIAB_BACC7 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus (strain AH187) GN=miaB PE=3 SV=1
Length = 509
Score = 117 bits (294), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>sp|A8FDH0|MIAB_BACP2 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus pumilus (strain SAFR-032) GN=miaB PE=3 SV=1
Length = 508
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NTC ++ +++ + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +VL +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKL 337
>sp|B7JJ50|MIAB_BACC0 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus (strain AH820) GN=miaB PE=3 SV=1
Length = 509
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>sp|A0RHE4|MIAB_BACAH (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus thuringiensis (strain Al Hakam) GN=miaB PE=3
SV=2
Length = 509
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>sp|Q81WR0|MIAB_BACAN (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus anthracis GN=miaB PE=3 SV=1
Length = 509
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>sp|Q8DJB2|MIAB_THEEB (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Thermosynechococcus elongatus (strain BP-1) GN=miaB
PE=3 SV=1
Length = 450
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 134/276 (48%), Gaps = 22/276 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ TFGC N++DSE MAG L A G L +EAD+ L NTCT++ ++ + + + +
Sbjct: 6 YITTFGCQMNKADSERMAGILEAMGLELAAEPDEADVLLYNTCTIRDNAEQKLYSYLGRQ 65
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G + L+ + V +V G Q +R+ E++E+ G +V
Sbjct: 66 AKRKHQDPNLTLIVAGCVAQQEGEQLLRRVPEVDLVMGPQYANRLGELLEQVWNGSQVVA 125
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ D+ K RR+ V +NV GC CTYC RG S E++ +
Sbjct: 126 TEPLQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPGVRGQEQSRRPEAIRAEIE 183
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ A G KEV L ++ AYGRD+ G + + G +R ++P
Sbjct: 184 ELAAQGYKEVTLLGQNIDAYGRDLPGITPEGRRQHTFTDLLYYIHDVAGIERIRFATSHP 243
Query: 286 PFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
+ E L + AE+ P V H+P QSG + +L
Sbjct: 244 RYFTERLIRACAEL---PKVCKHFHIPFQSGDNEIL 276
>sp|B7HDP7|MIAB_BACC4 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus (strain B4264) GN=miaB PE=3 SV=1
Length = 509
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>sp|Q812Y0|MIAB_BACCR (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=miaB
PE=3 SV=1
Length = 509
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 143/278 (51%), Gaps = 23/278 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDFLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ ++ H +H+PVQSGS +L +
Sbjct: 307 DDHLIEVLGKGGNLVEH------IHLPVQSGSTDMLKI 338
>sp|A4IMH7|MIAB_GEOTN (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Geobacillus thermodenitrificans (strain NG80-2)
GN=miaB PE=3 SV=2
Length = 523
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 135/274 (49%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGELGY 141
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDFN-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS +L +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKM 352
>sp|O66638|MIAB_AQUAE (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Aquifex
aeolicus (strain VF5) GN=miaB PE=3 SV=1
Length = 440
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 148/282 (52%), Gaps = 19/282 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PSQSAMDT 116
++ ++KTFGC N +DSE + G L GY TDN EEAD+ ++NTCT++ P Q +
Sbjct: 2 SKKFFIKTFGCQMNFNDSERIRGLLKTIGYEQTDNWEEADLIILNTCTIREKPDQKVLSH 61
Query: 117 L----IAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGH 169
L K K+ K + VAGC+ Q G +K+ + I+ + ++ E++ + G+
Sbjct: 62 LGEYKKIKEKNPKALIAVAGCLAQRTGWELVKKAPVIDIMFSSFNMHQLPELINQAQAGY 121
Query: 170 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+ + L + + + P R NK+ + I GC CTYC RG S + S
Sbjct: 122 KAIAILDELPQDEDKIWEYPVERDNKYCAYVTIIKGCDKNCTYCVVPRTRGKERSRALHS 181
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
++ V+ ++ DGV+E+ L ++ A+G+D PI + ++ ++ DG +R +
Sbjct: 182 ILDEVKRLVDDGVREIHLLGQNVTAWGKDF--EKPIPFSELLYQVSKIDGVERIRFTTGH 239
Query: 285 PPFILEHLKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
P + + + E +A++ P V + LH+P Q+GS+ +L++ +
Sbjct: 240 PRDLTDDIIEAMADI---PQVCNALHLPFQAGSNRILALMDR 278
>sp|Q6HF43|MIAB_BACHK (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus thuringiensis subsp. konkukian (strain
97-27) GN=miaB PE=3 SV=1
Length = 509
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>sp|Q636Q4|MIAB_BACCZ (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus (strain ZK / E33L) GN=miaB PE=3 SV=1
Length = 509
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL E+ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKI 338
>sp|Q8CSS3|MIAB_STAES (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=miaB PE=3 SV=1
Length = 514
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++ VL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKI 340
>sp|Q5HPP8|MIAB_STAEQ (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=miaB PE=3 SV=1
Length = 514
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 15/275 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L+A GY+ T + EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V +V G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +E+ L ++ +YG+DI L L ++ ++ +R ++P
Sbjct: 249 DEVRELAREGYQEITLLGQNVNSYGKDIE-GLDYELGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ + E+ + + + +H+PVQSG++ VL +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNQVLKI 340
>sp|A9VS16|MIAB_BACWK (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus weihenstephanensis (strain KBAB4) GN=miaB
PE=3 SV=1
Length = 509
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 142/274 (51%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+HL ++ + + + +H+PVQSGS +L +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKI 338
>sp|Q9WZC1|MIAB_THEMA (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM
3109 / JCM 10099) GN=miaB PE=1 SV=1
Length = 443
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 138/274 (50%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y+KTFGC N++DSE MAG L G+ + EEAD+ +INTC V+ S+ + + +
Sbjct: 3 FYIKTFGCQMNENDSEAMAGLLVKEGFTPASSPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 121 CKSAKKPLV----VAGCVPQGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL- 174
KK VAGCV + R+ +G V G + + RV E V++ L+G +V L
Sbjct: 63 VLKLKKKKKIVVGVAGCVAEKEREKFLEKGADFVLGTRAVPRVTEAVKKALEGEKVALFE 122
Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H + +LP++R ++ + I GC CTYC + RG S + ++ V+ +
Sbjct: 123 DHLDEYTH-ELPRIRTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSRPMADILEEVKKL 181
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AEQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSDE 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325
L E+ + ++P V +H+PVQSGS+ +L + +
Sbjct: 239 LIEV--IAKNPKVAKSVHLPVQSGSNRILKLMNR 270
>sp|A6LJ47|MIAB_THEM4 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Thermosipho melanesiensis (strain BI429 / DSM 12029)
GN=miaB PE=3 SV=1
Length = 430
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 135/268 (50%), Gaps = 17/268 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I++KT+GC N++DSE L GY +T+N +ADI ++NTC V+ S+ + I +
Sbjct: 4 IHIKTYGCQMNENDSEVAKFYLEEEGYEITNNENDADIVILNTCVVRKKSEDKFYSHIGE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K + + GC + ++ GV ++G + I + + VE + G + + K+
Sbjct: 64 LKKQNKIIGIMGCGAEKEKEKLFKRGVKFVIGTRAIPLIPQAVERAINGKKSAIFE-DKM 122
Query: 180 PALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+D K+ R +K + I GC CTYC + RG S ++ ++ V + G
Sbjct: 123 DEIDYKKILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMDDIINEVENLAKSG 182
Query: 238 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG-MTNPP--FILEHL 292
+KEV ++ AYG+D+ G +L LLN L D + RI +T+ P F L+
Sbjct: 183 IKEVTYLGQNVDAYGKDLNDGSSLAKLLN-----LTKDIEEIERIWFLTSYPTDFSLDIA 237
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
E+A + + +H+PVQ GS+ +L
Sbjct: 238 HEVANSSK---ITKNIHLPVQHGSNKIL 262
>sp|O31778|MIAB_BACSU (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus subtilis (strain 168) GN=miaB PE=1 SV=1
Length = 509
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 138/274 (50%), Gaps = 15/274 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V I G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
+ L E+ + + + +H+PVQSGS VL +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKL 338
>sp|Q7A110|MIAB_STAAW (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Staphylococcus aureus (strain MW2) GN=miaB PE=3 SV=1
Length = 514
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>sp|Q6G9S1|MIAB_STAAS (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Staphylococcus aureus (strain MSSA476) GN=miaB PE=3
SV=1
Length = 514
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>sp|Q7A5W3|MIAB_STAAN (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Staphylococcus aureus (strain N315) GN=miaB PE=1 SV=1
Length = 514
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>sp|Q99UI1|MIAB_STAAM (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=miaB PE=1 SV=1
Length = 514
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
>sp|A5ISH6|MIAB_STAA9 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Staphylococcus aureus (strain JH9) GN=miaB PE=3 SV=1
Length = 514
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E +AG L A GY T + AD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V I G I + E++EE K
Sbjct: 129 NLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
VR + +G KE+ L ++ +YG+ DI +L LL AI P +R ++
Sbjct: 249 DEVRELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIAIP----RVRFTTSH 304
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322
P +H+ ++ + + +H+PVQSG++AVL +
Sbjct: 305 PWDFTDHMIDV--ISEGGNIVPHIHLPVQSGNNAVLKI 340
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,003,958
Number of Sequences: 539616
Number of extensions: 5699048
Number of successful extensions: 17910
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 14797
Number of HSP's gapped (non-prelim): 1110
length of query: 334
length of database: 191,569,459
effective HSP length: 118
effective length of query: 216
effective length of database: 127,894,771
effective search space: 27625270536
effective search space used: 27625270536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)