Query 019874
Match_columns 334
No_of_seqs 334 out of 1902
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:13:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4355 Predicted Fe-S oxidore 100.0 5.1E-71 1.1E-75 519.7 23.3 325 1-332 1-325 (547)
2 COG0621 MiaB 2-methylthioadeni 100.0 8.5E-70 1.8E-74 533.7 25.7 268 58-332 2-282 (437)
3 PRK14340 (dimethylallyl)adenos 100.0 1.8E-60 3.9E-65 475.0 28.9 272 56-332 4-285 (445)
4 PRK14327 (dimethylallyl)adenos 100.0 7.7E-60 1.7E-64 475.4 29.2 272 55-332 63-349 (509)
5 PRK14326 (dimethylallyl)adenos 100.0 1.3E-59 2.8E-64 474.8 29.1 274 53-332 8-294 (502)
6 PRK14332 (dimethylallyl)adenos 100.0 3.2E-59 7E-64 466.3 28.2 269 58-332 10-288 (449)
7 PRK14330 (dimethylallyl)adenos 100.0 4.1E-59 8.8E-64 464.5 28.1 267 60-332 2-277 (434)
8 PRK14329 (dimethylallyl)adenos 100.0 1.9E-58 4.1E-63 463.1 28.9 275 53-332 18-310 (467)
9 PRK14335 (dimethylallyl)adenos 100.0 2E-58 4.2E-63 461.8 28.6 269 60-332 2-295 (455)
10 PRK14337 (dimethylallyl)adenos 100.0 7.5E-58 1.6E-62 456.7 28.9 269 58-332 3-286 (446)
11 PRK14333 (dimethylallyl)adenos 100.0 8.8E-58 1.9E-62 456.5 27.6 268 58-332 6-292 (448)
12 TIGR01578 MiaB-like-B MiaB-lik 100.0 1.1E-57 2.4E-62 452.5 27.7 265 60-332 1-270 (420)
13 TIGR00089 RNA modification enz 100.0 9.8E-58 2.1E-62 454.0 27.2 266 60-332 1-276 (429)
14 PRK14331 (dimethylallyl)adenos 100.0 1.6E-57 3.5E-62 453.4 28.3 268 60-332 2-282 (437)
15 PRK14336 (dimethylallyl)adenos 100.0 1.5E-57 3.2E-62 451.1 26.5 251 58-332 1-261 (418)
16 PRK14328 (dimethylallyl)adenos 100.0 2.7E-57 5.8E-62 452.1 28.3 269 59-332 2-284 (439)
17 TIGR01574 miaB-methiolase tRNA 100.0 3.4E-57 7.5E-62 451.1 28.0 268 60-332 1-284 (438)
18 TIGR01125 MiaB-like tRNA modif 100.0 3.8E-57 8.2E-62 449.9 28.2 266 60-332 1-272 (430)
19 PRK14325 (dimethylallyl)adenos 100.0 6.4E-57 1.4E-61 450.0 28.3 271 57-332 2-286 (444)
20 PRK14338 (dimethylallyl)adenos 100.0 1.2E-56 2.6E-61 449.4 27.5 270 50-332 12-292 (459)
21 TIGR01579 MiaB-like-C MiaB-lik 100.0 2.9E-56 6.4E-61 441.6 26.5 264 63-332 1-275 (414)
22 PRK14862 rimO ribosomal protei 100.0 3.8E-56 8.2E-61 443.7 26.8 261 57-332 6-283 (440)
23 PRK14334 (dimethylallyl)adenos 100.0 6.8E-55 1.5E-59 434.8 27.7 264 60-332 2-274 (440)
24 PRK14339 (dimethylallyl)adenos 100.0 9.1E-54 2E-58 424.3 26.2 255 70-332 1-267 (420)
25 KOG2492 CDK5 activator-binding 100.0 1.5E-49 3.3E-54 376.8 20.4 271 56-332 70-380 (552)
26 PF00919 UPF0004: Uncharacteri 100.0 7.4E-29 1.6E-33 198.5 10.1 92 60-151 1-98 (98)
27 TIGR02026 BchE magnesium-proto 100.0 9.9E-27 2.2E-31 235.6 23.6 243 75-332 25-325 (497)
28 TIGR03471 HpnJ hopanoid biosyn 99.9 1.2E-25 2.6E-30 226.5 18.7 220 94-332 67-325 (472)
29 PRK00955 hypothetical protein; 99.9 4E-25 8.8E-30 225.4 21.0 130 192-327 292-456 (620)
30 PRK01254 hypothetical protein; 99.9 8.8E-24 1.9E-28 214.8 11.7 134 192-331 372-541 (707)
31 COG1032 Fe-S oxidoreductase [E 99.8 5.4E-19 1.2E-23 176.7 18.3 229 95-332 72-338 (490)
32 PRK05481 lipoyl synthase; Prov 99.8 4.6E-18 9.9E-23 161.3 11.6 131 190-332 51-182 (289)
33 PRK12928 lipoyl synthase; Prov 99.6 5.1E-15 1.1E-19 140.4 10.9 132 190-332 58-190 (290)
34 TIGR00510 lipA lipoate synthas 99.6 2.1E-14 4.5E-19 136.8 12.1 130 190-331 61-192 (302)
35 PRK07094 biotin synthase; Prov 99.5 5.5E-14 1.2E-18 135.1 12.0 126 193-332 40-167 (323)
36 TIGR01210 conserved hypothetic 99.5 7.6E-14 1.6E-18 133.9 11.9 131 192-332 15-157 (313)
37 PRK08599 coproporphyrinogen II 99.5 8.1E-14 1.8E-18 136.8 10.8 131 193-332 3-138 (377)
38 PF04055 Radical_SAM: Radical 99.4 1.1E-12 2.3E-17 111.2 8.9 125 196-332 1-129 (166)
39 PRK09058 coproporphyrinogen II 99.4 1.9E-12 4.2E-17 130.0 11.0 132 192-332 62-201 (449)
40 PRK06245 cofG FO synthase subu 99.4 1.7E-12 3.8E-17 125.5 9.4 128 193-329 13-149 (336)
41 PRK05799 coproporphyrinogen II 99.4 2.5E-12 5.4E-17 126.1 10.6 128 195-332 7-137 (374)
42 COG1031 Uncharacterized Fe-S o 99.4 3E-12 6.5E-17 124.9 10.8 139 191-332 182-338 (560)
43 PRK05628 coproporphyrinogen II 99.4 4.8E-12 1E-16 124.2 12.2 123 202-332 12-146 (375)
44 PLN02428 lipoic acid synthase 99.4 4.3E-12 9.4E-17 122.7 11.3 128 192-331 102-232 (349)
45 PRK05904 coproporphyrinogen II 99.4 1.4E-12 2.9E-17 127.2 7.9 127 193-332 10-141 (353)
46 PRK08446 coproporphyrinogen II 99.3 2.9E-12 6.3E-17 124.8 9.4 121 202-332 10-136 (350)
47 TIGR00538 hemN oxygen-independ 99.3 1E-11 2.2E-16 125.0 11.5 130 194-332 52-189 (455)
48 smart00729 Elp3 Elongator prot 99.3 1.6E-11 3.5E-16 108.2 10.5 132 193-332 2-138 (216)
49 PRK09057 coproporphyrinogen II 99.3 1.2E-11 2.6E-16 121.7 10.4 123 202-332 14-142 (380)
50 PRK06256 biotin synthase; Vali 99.3 1.6E-11 3.6E-16 118.6 10.9 121 199-332 65-189 (336)
51 PRK07379 coproporphyrinogen II 99.3 1.7E-11 3.6E-16 121.5 11.0 123 202-332 20-153 (400)
52 PRK08207 coproporphyrinogen II 99.3 1.9E-11 4.1E-16 123.7 11.5 134 191-332 163-307 (488)
53 PRK08208 coproporphyrinogen II 99.3 1.8E-11 3.9E-16 122.3 11.1 133 191-332 39-179 (430)
54 PRK13347 coproporphyrinogen II 99.3 2.2E-11 4.9E-16 122.4 11.5 132 192-332 51-190 (453)
55 PRK08629 coproporphyrinogen II 99.3 2.6E-11 5.6E-16 121.3 11.3 126 191-330 52-181 (433)
56 PRK09249 coproporphyrinogen II 99.2 3.3E-11 7.2E-16 121.2 11.1 123 202-332 59-189 (453)
57 PRK08898 coproporphyrinogen II 99.2 2.7E-11 5.9E-16 119.7 9.7 130 192-332 22-160 (394)
58 TIGR01212 radical SAM protein, 99.2 3.1E-11 6.7E-16 115.4 9.8 128 195-332 21-165 (302)
59 TIGR00423 radical SAM domain p 99.2 3.2E-11 6.9E-16 115.5 9.8 129 194-331 7-146 (309)
60 TIGR00433 bioB biotin syntheta 99.2 8E-11 1.7E-15 111.5 11.9 126 194-332 30-160 (296)
61 TIGR00539 hemN_rel putative ox 99.2 6.7E-11 1.4E-15 115.6 9.9 123 202-332 10-138 (360)
62 PRK08445 hypothetical protein; 99.2 4E-11 8.7E-16 116.7 8.2 128 195-331 45-183 (348)
63 PRK05660 HemN family oxidoredu 99.2 2E-10 4.3E-15 113.1 12.1 130 194-332 9-145 (378)
64 PRK06582 coproporphyrinogen II 99.2 1.1E-10 2.5E-15 115.2 10.3 129 193-332 15-149 (390)
65 cd01335 Radical_SAM Radical SA 99.1 3.5E-10 7.6E-15 98.2 11.3 123 196-331 1-126 (204)
66 PRK06294 coproporphyrinogen II 99.1 2E-10 4.3E-15 112.7 9.2 119 202-332 16-141 (370)
67 TIGR03551 F420_cofH 7,8-dideme 99.1 3.1E-10 6.8E-15 110.2 9.7 127 195-330 42-179 (343)
68 TIGR03550 F420_cofG 7,8-dideme 99.1 4.8E-10 1E-14 108.0 9.1 126 193-330 5-145 (322)
69 TIGR03700 mena_SCO4494 putativ 99.0 8E-10 1.7E-14 107.7 8.6 122 194-328 50-185 (351)
70 TIGR01211 ELP3 histone acetylt 99.0 1.3E-09 2.9E-14 110.9 10.1 125 200-332 76-244 (522)
71 PRK00164 moaA molybdenum cofac 99.0 7.2E-09 1.6E-13 99.9 12.8 126 193-332 18-146 (331)
72 TIGR03699 mena_SCO4550 menaqui 99.0 1.1E-09 2.4E-14 106.1 7.1 125 195-331 44-182 (340)
73 COG1243 ELP3 Histone acetyltra 98.9 2.8E-09 6.1E-14 104.6 8.7 135 192-332 67-236 (515)
74 PRK13361 molybdenum cofactor b 98.9 1.2E-08 2.7E-13 98.5 12.7 126 193-332 15-142 (329)
75 PRK09240 thiH thiamine biosynt 98.9 1.1E-08 2.4E-13 100.5 11.6 124 194-331 76-203 (371)
76 TIGR03822 AblA_like_2 lysine-2 98.8 2.4E-08 5.2E-13 96.3 11.3 120 188-318 84-210 (321)
77 TIGR00238 KamA family protein. 98.8 4E-08 8.7E-13 95.1 12.3 126 188-323 109-243 (331)
78 TIGR02351 thiH thiazole biosyn 98.8 2.9E-08 6.2E-13 97.4 11.4 125 193-331 74-202 (366)
79 TIGR02666 moaA molybdenum cofa 98.8 5.6E-08 1.2E-12 94.0 12.9 125 193-331 11-140 (334)
80 PRK08508 biotin synthase; Prov 98.8 2.3E-08 5E-13 94.6 10.0 122 198-331 13-138 (279)
81 TIGR02668 moaA_archaeal probab 98.8 7.3E-08 1.6E-12 91.7 12.7 124 193-331 11-135 (302)
82 COG0635 HemN Coproporphyrinoge 98.7 7.6E-08 1.6E-12 95.9 9.4 123 202-332 44-175 (416)
83 PLN02951 Molybderin biosynthes 98.6 4.4E-07 9.5E-12 89.3 12.9 124 193-330 59-185 (373)
84 PRK06267 hypothetical protein; 98.6 1.2E-07 2.6E-12 92.5 8.6 120 193-332 28-155 (350)
85 TIGR02495 NrdG2 anaerobic ribo 98.5 1.9E-06 4.1E-11 76.4 12.9 119 193-328 17-137 (191)
86 PRK14463 ribosomal RNA large s 98.5 9.3E-07 2E-11 86.2 10.4 127 190-332 101-236 (349)
87 TIGR02109 PQQ_syn_pqqE coenzym 98.4 3.6E-06 7.9E-11 82.0 14.2 120 191-325 6-126 (358)
88 PRK05301 pyrroloquinoline quin 98.4 2.7E-06 5.8E-11 83.6 13.2 122 190-326 14-136 (378)
89 COG2896 MoaA Molybdenum cofact 98.4 2E-06 4.3E-11 82.4 11.2 124 194-332 13-139 (322)
90 PRK09613 thiH thiamine biosynt 98.4 3.8E-06 8.2E-11 84.8 12.7 126 193-328 85-214 (469)
91 TIGR03820 lys_2_3_AblA lysine- 98.3 3.8E-06 8.2E-11 83.4 11.6 106 188-301 104-215 (417)
92 COG1242 Predicted Fe-S oxidore 98.3 2.3E-06 4.9E-11 79.7 8.5 128 196-332 28-170 (312)
93 PRK14456 ribosomal RNA large s 98.3 6.4E-06 1.4E-10 80.9 12.1 128 191-332 120-264 (368)
94 PLN02389 biotin synthase 98.3 4.5E-06 9.6E-11 82.3 10.9 126 193-331 83-214 (379)
95 PRK14455 ribosomal RNA large s 98.2 9E-06 2E-10 79.6 11.6 129 191-332 108-248 (356)
96 TIGR03821 AblA_like_1 lysine-2 98.2 1.3E-05 2.7E-10 77.5 11.9 120 193-323 97-226 (321)
97 TIGR02493 PFLA pyruvate format 98.2 8.7E-06 1.9E-10 74.5 10.3 117 194-326 17-140 (235)
98 PRK05926 hypothetical protein; 98.2 8.9E-06 1.9E-10 80.0 10.6 122 196-330 72-207 (370)
99 PRK14470 ribosomal RNA large s 98.1 3.4E-05 7.5E-10 74.9 11.7 128 191-331 96-232 (336)
100 PRK15108 biotin synthase; Prov 98.1 2.8E-05 6E-10 75.9 10.5 123 194-330 44-171 (345)
101 COG2100 Predicted Fe-S oxidore 98.0 4E-05 8.7E-10 72.9 10.2 127 192-331 107-243 (414)
102 PRK07360 FO synthase subunit 2 98.0 3.7E-05 8.1E-10 75.6 10.4 121 195-326 63-196 (371)
103 PRK14469 ribosomal RNA large s 98.0 5.5E-05 1.2E-09 73.7 11.0 128 191-332 100-237 (343)
104 PRK14466 ribosomal RNA large s 97.9 0.00016 3.5E-09 70.3 13.3 126 191-332 102-236 (345)
105 PRK14468 ribosomal RNA large s 97.9 0.00024 5.3E-09 69.2 13.3 127 191-332 92-232 (343)
106 PRK08444 hypothetical protein; 97.9 5.7E-05 1.2E-09 73.9 8.8 123 195-329 52-187 (353)
107 PRK14460 ribosomal RNA large s 97.9 0.00032 7E-09 68.6 14.0 119 191-326 101-234 (354)
108 cd02068 radical_SAM_B12_BD B12 97.9 8.1E-05 1.8E-09 61.8 8.4 72 94-169 38-114 (127)
109 PRK14457 ribosomal RNA large s 97.8 0.00019 4.2E-09 69.9 11.5 129 190-331 99-240 (345)
110 PRK11145 pflA pyruvate formate 97.8 0.00012 2.6E-09 67.6 9.6 116 193-325 21-144 (246)
111 PRK14459 ribosomal RNA large s 97.8 0.00012 2.5E-09 72.1 10.0 128 191-332 120-267 (373)
112 TIGR00048 radical SAM enzyme, 97.8 0.00021 4.5E-09 70.0 10.8 128 190-332 103-244 (355)
113 PRK09234 fbiC FO synthase; Rev 97.7 0.00015 3.1E-09 78.3 10.0 118 195-324 529-659 (843)
114 TIGR03365 Bsubt_queE 7-cyano-7 97.7 9.4E-05 2E-09 68.4 7.0 69 194-268 25-98 (238)
115 PF02310 B12-binding: B12 bind 97.7 0.00025 5.4E-09 57.9 8.8 85 75-162 17-121 (121)
116 COG1509 KamA Lysine 2,3-aminom 97.7 0.00015 3.2E-09 70.0 8.1 99 188-292 107-211 (369)
117 PRK05927 hypothetical protein; 97.7 7E-05 1.5E-09 73.2 5.9 119 195-325 48-179 (350)
118 PRK14453 chloramphenicol/florf 97.7 0.00044 9.6E-09 67.5 11.3 118 192-323 100-222 (347)
119 TIGR01290 nifB nitrogenase cof 97.6 0.0011 2.3E-08 66.8 14.3 118 192-323 24-152 (442)
120 PTZ00413 lipoate synthase; Pro 97.6 0.00058 1.3E-08 66.9 11.4 124 193-331 150-279 (398)
121 PRK14467 ribosomal RNA large s 97.5 0.0011 2.4E-08 64.7 12.3 120 190-325 97-228 (348)
122 PRK14465 ribosomal RNA large s 97.5 0.0009 1.9E-08 65.2 11.4 126 191-331 104-240 (342)
123 COG0820 Predicted Fe-S-cluster 97.5 0.0013 2.7E-08 63.9 11.2 131 189-332 98-241 (349)
124 TIGR03470 HpnH hopanoid biosyn 97.5 0.0013 2.8E-08 63.4 11.5 108 190-316 26-135 (318)
125 COG0602 NrdG Organic radical a 97.4 0.00029 6.2E-09 64.2 5.6 67 195-268 26-97 (212)
126 PRK14461 ribosomal RNA large s 97.4 0.0027 5.8E-08 62.3 12.5 127 191-332 106-257 (371)
127 COG1060 ThiH Thiamine biosynth 97.3 0.00064 1.4E-08 66.9 7.9 75 194-271 61-137 (370)
128 TIGR00640 acid_CoA_mut_C methy 97.3 0.0043 9.2E-08 52.3 11.2 102 59-164 3-122 (132)
129 PRK14464 ribosomal RNA large s 97.3 0.00086 1.9E-08 65.3 7.9 124 193-331 97-227 (344)
130 TIGR02826 RNR_activ_nrdG3 anae 97.2 0.00098 2.1E-08 57.2 7.1 67 195-268 18-86 (147)
131 COG1244 Predicted Fe-S oxidore 97.2 0.0025 5.4E-08 60.9 10.0 128 195-332 50-192 (358)
132 PRK11194 ribosomal RNA large s 97.2 0.0042 9.1E-08 61.2 11.5 126 191-330 102-243 (372)
133 PRK14454 ribosomal RNA large s 97.1 0.0035 7.6E-08 61.1 10.7 118 191-324 100-226 (342)
134 PRK13762 tRNA-modifying enzyme 97.1 0.0044 9.5E-08 60.0 10.8 111 198-326 64-201 (322)
135 PRK14462 ribosomal RNA large s 97.1 0.0038 8.3E-08 61.1 10.2 124 191-330 109-247 (356)
136 PRK09234 fbiC FO synthase; Rev 97.0 0.002 4.4E-08 69.6 8.7 117 194-322 73-204 (843)
137 cd02065 B12-binding_like B12 b 97.0 0.0016 3.5E-08 53.1 5.7 82 76-163 17-116 (125)
138 COG0731 Fe-S oxidoreductases [ 97.0 0.0099 2.2E-07 56.6 11.5 111 201-329 33-154 (296)
139 PF13353 Fer4_12: 4Fe-4S singl 96.9 0.0033 7.1E-08 52.4 7.3 122 199-331 12-137 (139)
140 COG0502 BioB Biotin synthase a 96.9 0.0059 1.3E-07 59.1 9.5 125 193-331 51-180 (335)
141 PF13394 Fer4_14: 4Fe-4S singl 96.7 0.0046 9.9E-08 50.3 6.5 83 198-286 4-90 (119)
142 COG0535 Predicted Fe-S oxidore 96.6 0.026 5.6E-07 53.9 12.0 121 190-324 17-139 (347)
143 TIGR03278 methan_mark_10 putat 96.5 0.021 4.6E-07 56.9 10.5 108 204-325 37-149 (404)
144 TIGR01501 MthylAspMutase methy 96.4 0.078 1.7E-06 44.8 12.1 88 75-164 18-130 (134)
145 cd02067 B12-binding B12 bindin 96.4 0.017 3.7E-07 47.1 8.0 78 75-154 16-111 (119)
146 cd02072 Glm_B12_BD B12 binding 96.3 0.023 5E-07 47.7 8.4 86 75-164 16-125 (128)
147 PRK02261 methylaspartate mutas 96.3 0.068 1.5E-06 45.3 11.3 104 60-165 5-133 (137)
148 TIGR02491 NrdG anaerobic ribon 95.9 0.032 6.9E-07 48.1 7.4 67 199-269 22-93 (154)
149 COG2185 Sbm Methylmalonyl-CoA 95.9 0.099 2.2E-06 44.6 10.2 104 58-165 12-133 (143)
150 PRK13758 anaerobic sulfatase-m 95.9 0.097 2.1E-06 51.1 11.7 119 195-324 8-134 (370)
151 COG1533 SplB DNA repair photol 95.8 0.08 1.7E-06 50.7 10.4 125 193-325 30-163 (297)
152 COG1313 PflX Uncharacterized F 95.5 0.073 1.6E-06 50.4 8.4 62 199-267 125-188 (335)
153 PRK13745 anaerobic sulfatase-m 95.3 0.3 6.6E-06 48.7 13.1 121 191-323 12-142 (412)
154 KOG2492 CDK5 activator-binding 95.2 0.012 2.6E-07 57.8 2.3 52 49-109 385-437 (552)
155 cd02071 MM_CoA_mut_B12_BD meth 94.8 0.24 5.1E-06 40.8 8.9 77 76-154 17-111 (122)
156 COG0320 LipA Lipoate synthase 94.6 0.18 3.9E-06 47.5 8.4 75 194-271 72-147 (306)
157 PRK09426 methylmalonyl-CoA mut 94.3 0.45 9.7E-06 50.9 11.6 103 58-164 582-702 (714)
158 PRK11121 nrdG anaerobic ribonu 94.3 0.15 3.2E-06 44.0 6.7 66 200-270 24-96 (154)
159 KOG2672 Lipoate synthase [Coen 93.6 0.29 6.4E-06 46.1 7.6 97 195-301 114-213 (360)
160 cd02070 corrinoid_protein_B12- 93.2 0.28 6E-06 44.1 6.8 73 75-151 99-190 (201)
161 COG0641 AslB Arylsulfatase reg 92.7 0.95 2.1E-05 44.8 10.3 102 202-314 18-123 (378)
162 PRK14818 NADH dehydrogenase su 92.7 0.34 7.4E-06 42.5 6.3 77 58-137 30-111 (173)
163 COG1625 Fe-S oxidoreductase, r 92.3 0.29 6.2E-06 48.5 6.0 120 202-331 37-162 (414)
164 COG5014 Predicted Fe-S oxidore 91.9 0.41 8.8E-06 42.3 5.8 107 199-321 48-161 (228)
165 COG2108 Uncharacterized conser 91.9 0.57 1.2E-05 45.2 7.2 113 195-323 31-157 (353)
166 PRK14816 NADH dehydrogenase su 91.5 0.51 1.1E-05 41.9 6.1 75 59-138 41-123 (182)
167 TIGR01957 nuoB_fam NADH-quinon 91.4 0.52 1.1E-05 40.4 5.9 73 59-137 17-98 (145)
168 COG1180 PflA Pyruvate-formate 90.7 1.5 3.3E-05 41.1 8.8 72 193-268 36-110 (260)
169 KOG2535 RNA polymerase II elon 90.6 0.96 2.1E-05 44.0 7.3 108 219-332 148-274 (554)
170 TIGR02370 pyl_corrinoid methyl 89.7 0.94 2E-05 40.6 6.3 71 75-149 101-190 (197)
171 PRK06411 NADH dehydrogenase su 88.6 1 2.3E-05 40.0 5.7 76 59-137 35-115 (183)
172 TIGR02494 PFLE_PFLC glycyl-rad 88.5 3.8 8.2E-05 38.7 9.9 88 220-324 105-196 (295)
173 KOG2876 Molybdenum cofactor bi 88.5 0.25 5.4E-06 46.3 1.7 116 196-325 15-133 (323)
174 PRK14813 NADH dehydrogenase su 87.8 0.38 8.3E-06 42.8 2.4 75 59-136 28-107 (189)
175 PF04016 DUF364: Domain of unk 87.7 0.98 2.1E-05 38.7 4.8 55 94-152 61-116 (147)
176 COG1856 Uncharacterized homolo 87.5 3.1 6.8E-05 38.3 8.1 120 197-331 16-137 (275)
177 PRK14819 NADH dehydrogenase su 87.5 1.7 3.7E-05 40.5 6.5 75 59-137 31-112 (264)
178 cd02069 methionine_synthase_B1 87.2 1.7 3.7E-05 39.5 6.3 58 75-134 105-178 (213)
179 KOG2900 Biotin synthase [Coenz 86.9 0.93 2E-05 42.3 4.4 65 199-268 91-162 (380)
180 CHL00023 ndhK NADH dehydrogena 86.3 1.8 3.9E-05 39.6 5.9 75 59-137 32-112 (225)
181 PF08821 CGGC: CGGC domain; I 85.0 2.6 5.6E-05 34.2 5.7 61 60-131 40-105 (107)
182 PRK14815 NADH dehydrogenase su 84.8 2.5 5.4E-05 37.6 5.9 75 59-137 33-114 (183)
183 COG4277 Predicted DNA-binding 76.8 1.6 3.5E-05 41.7 2.1 112 199-323 61-177 (404)
184 COG3473 Maleate cis-trans isom 75.9 4.3 9.3E-05 37.0 4.4 32 58-92 118-149 (238)
185 PRK14814 NADH dehydrogenase su 75.8 5.8 0.00013 35.4 5.2 76 59-137 33-114 (186)
186 PRK14820 NADH dehydrogenase su 75.2 9.5 0.00021 33.9 6.3 67 65-137 41-114 (180)
187 PF05818 TraT: Enterobacterial 73.7 3.5 7.7E-05 37.6 3.4 55 44-100 7-64 (215)
188 PRK01254 hypothetical protein; 73.5 5.2 0.00011 42.5 4.9 53 118-171 140-209 (707)
189 COG1618 Predicted nucleotide k 73.0 36 0.00077 30.1 9.2 91 71-168 82-177 (179)
190 PF13552 DUF4127: Protein of u 72.2 13 0.00029 38.2 7.5 58 75-132 280-352 (497)
191 COG3260 Ni,Fe-hydrogenase III 72.2 6 0.00013 33.5 4.1 45 63-115 24-68 (148)
192 PRK13292 trifunctional NADH de 70.5 8.1 0.00018 41.9 5.7 77 59-138 22-104 (788)
193 TIGR02082 metH 5-methyltetrahy 69.5 9.4 0.0002 43.4 6.2 59 75-135 749-823 (1178)
194 KOG3799 Rab3 effector RIM1 and 69.1 2.2 4.9E-05 35.9 0.9 25 197-221 75-102 (169)
195 TIGR01754 flav_RNR ribonucleot 68.6 17 0.00036 30.3 6.2 64 75-138 18-94 (140)
196 PF10649 DUF2478: Protein of u 66.6 10 0.00022 33.0 4.5 61 64-130 68-128 (159)
197 PF06283 ThuA: Trehalose utili 66.0 13 0.00027 33.4 5.3 55 75-130 21-86 (217)
198 PRK09271 flavodoxin; Provision 63.5 26 0.00057 29.9 6.6 60 75-134 18-94 (160)
199 COG1679 Predicted aconitase [G 63.4 13 0.00029 36.6 5.1 70 60-136 289-359 (403)
200 PRK09490 metH B12-dependent me 63.2 14 0.00031 42.0 6.1 60 75-136 768-843 (1229)
201 cd05014 SIS_Kpsf KpsF-like pro 63.0 34 0.00074 27.4 7.0 65 63-130 3-79 (128)
202 TIGR03127 RuMP_HxlB 6-phospho 60.6 55 0.0012 28.2 8.2 70 59-133 31-108 (179)
203 PRK14817 NADH dehydrogenase su 59.7 18 0.00039 32.1 4.9 74 59-136 35-115 (181)
204 COG2516 Biotin synthase-relate 58.8 19 0.00041 34.9 5.2 124 190-327 27-164 (339)
205 COG2014 Uncharacterized conser 57.8 20 0.00044 32.8 4.9 58 94-155 163-221 (250)
206 TIGR02990 ectoine_eutA ectoine 57.5 24 0.00051 32.7 5.5 33 57-92 119-151 (239)
207 PLN02617 imidazole glycerol ph 57.4 2.5E+02 0.0053 29.3 15.4 181 70-269 264-480 (538)
208 TIGR00642 mmCoA_mut_beta methy 57.4 95 0.0021 33.0 10.6 103 57-162 493-613 (619)
209 cd05013 SIS_RpiR RpiR-like pro 54.4 68 0.0015 25.5 7.3 68 63-133 16-96 (139)
210 COG5012 Predicted cobalamin bi 52.2 22 0.00048 32.6 4.3 50 75-126 121-184 (227)
211 COG3925 N-terminal domain of t 49.6 25 0.00055 27.9 3.7 45 78-133 23-67 (103)
212 cd03315 MLE_like Muconate lact 49.4 1.8E+02 0.0038 26.8 10.1 94 222-327 85-179 (265)
213 cd05005 SIS_PHI Hexulose-6-pho 48.5 1E+02 0.0022 26.5 8.0 73 59-136 34-114 (179)
214 COG1941 FrhG Coenzyme F420-red 48.1 32 0.00069 31.9 4.7 67 66-137 15-90 (247)
215 PF04412 DUF521: Protein of un 47.4 30 0.00064 34.7 4.8 72 56-136 285-359 (400)
216 PF02110 HK: Hydroxyethylthiaz 46.5 64 0.0014 30.1 6.6 84 70-153 15-115 (246)
217 COG1152 CdhA CO dehydrogenase/ 46.0 22 0.00049 37.1 3.7 43 96-138 500-542 (772)
218 PF03016 Exostosin: Exostosin 45.9 58 0.0013 30.1 6.4 37 68-105 32-69 (302)
219 cd05006 SIS_GmhA Phosphoheptos 45.1 2E+02 0.0043 24.7 10.7 61 94-161 100-163 (177)
220 PF03698 UPF0180: Uncharacteri 44.9 24 0.00051 27.2 2.8 26 77-102 12-42 (80)
221 PF10087 DUF2325: Uncharacteri 44.5 75 0.0016 24.7 5.8 35 94-131 47-81 (97)
222 PRK06242 flavodoxin; Provision 43.9 50 0.0011 27.4 5.1 63 75-137 15-86 (150)
223 PRK11543 gutQ D-arabinose 5-ph 42.3 1.1E+02 0.0024 29.0 7.7 70 59-133 43-125 (321)
224 cd01836 FeeA_FeeB_like SGNH_hy 42.3 1.1E+02 0.0025 26.0 7.3 66 60-133 40-114 (191)
225 KOG2368 Hydroxymethylglutaryl- 41.8 91 0.002 29.0 6.5 64 191-271 149-212 (316)
226 COG5561 Predicted metal-bindin 41.8 1.7E+02 0.0037 23.1 7.1 63 59-131 29-96 (101)
227 cd04723 HisA_HisF Phosphoribos 41.3 76 0.0017 29.0 6.2 88 225-327 36-123 (233)
228 PRK06703 flavodoxin; Provision 41.0 74 0.0016 26.6 5.7 66 74-139 14-96 (151)
229 TIGR00441 gmhA phosphoheptose 40.9 2.1E+02 0.0046 24.1 8.5 37 94-133 78-115 (154)
230 TIGR03168 1-PFK hexose kinase, 40.6 1.5E+02 0.0033 27.4 8.3 66 59-131 98-163 (303)
231 TIGR00393 kpsF KpsF/GutQ famil 40.3 1.2E+02 0.0027 27.6 7.5 67 63-132 3-82 (268)
232 TIGR03278 methan_mark_10 putat 40.2 14 0.0003 37.0 1.2 16 199-214 6-21 (404)
233 COG0685 MetF 5,10-methylenetet 39.7 1.9E+02 0.0041 27.5 8.8 65 219-287 87-154 (291)
234 PRK11104 hemG protoporphyrinog 39.6 1.1E+02 0.0024 26.6 6.7 63 71-134 13-87 (177)
235 PRK13731 conjugal transfer sur 39.4 26 0.00057 32.5 2.8 43 58-101 50-95 (243)
236 cd03142 GATase1_ThuA Type 1 gl 39.3 80 0.0017 28.8 5.9 59 75-135 25-96 (215)
237 PRK07308 flavodoxin; Validated 38.9 2.1E+02 0.0046 23.6 8.2 61 75-135 19-92 (146)
238 TIGR03555 F420_mer 5,10-methyl 38.7 2.8E+02 0.006 26.4 10.0 89 221-326 9-104 (325)
239 PRK10494 hypothetical protein; 38.5 80 0.0017 29.5 5.9 60 74-134 58-130 (259)
240 PRK03501 ppnK inorganic polyph 38.3 1.4E+02 0.003 28.1 7.6 64 58-127 2-66 (264)
241 PLN02746 hydroxymethylglutaryl 37.9 3.4E+02 0.0074 26.6 10.4 98 193-314 179-276 (347)
242 PRK11557 putative DNA-binding 37.7 1.5E+02 0.0032 27.4 7.7 71 58-133 128-211 (278)
243 PRK10294 6-phosphofructokinase 37.5 1.8E+02 0.004 27.1 8.4 65 59-131 102-166 (309)
244 PRK03094 hypothetical protein; 37.5 49 0.0011 25.4 3.6 25 78-102 13-42 (80)
245 PRK05568 flavodoxin; Provision 37.3 93 0.002 25.5 5.7 43 94-136 47-93 (142)
246 cd03063 TRX_Fd_FDH_beta TRX-li 36.2 1.1E+02 0.0024 24.1 5.5 68 99-167 5-79 (92)
247 PF13590 DUF4136: Domain of un 35.7 40 0.00086 27.9 3.2 45 55-101 14-65 (151)
248 cd01164 FruK_PfkB_like 1-phosp 35.5 2.2E+02 0.0048 26.1 8.5 65 60-131 100-164 (289)
249 PRK04885 ppnK inorganic polyph 35.3 2.5E+02 0.0055 26.3 8.8 62 60-129 2-65 (265)
250 cd07043 STAS_anti-anti-sigma_f 34.9 1.8E+02 0.0038 21.6 6.5 70 60-135 8-80 (99)
251 PF00682 HMGL-like: HMGL-like 34.5 2.8E+02 0.0062 24.8 8.9 83 221-314 134-216 (237)
252 PRK13143 hisH imidazole glycer 34.0 1.1E+02 0.0025 27.0 6.0 72 59-135 1-80 (200)
253 PRK11337 DNA-binding transcrip 33.8 1.4E+02 0.0031 27.8 7.0 74 58-136 140-226 (292)
254 TIGR00262 trpA tryptophan synt 33.5 94 0.002 29.0 5.6 81 73-153 127-229 (256)
255 PRK08195 4-hyroxy-2-oxovalerat 32.5 3.3E+02 0.0071 26.5 9.3 83 221-313 141-223 (337)
256 PF00296 Bac_luciferase: Lucif 32.4 3.2E+02 0.0069 25.3 9.1 91 222-324 21-119 (307)
257 smart00292 BRCT breast cancer 32.4 1.7E+02 0.0037 20.2 6.2 44 59-105 6-51 (80)
258 PRK13587 1-(5-phosphoribosyl)- 32.2 2.4E+02 0.0053 25.8 8.0 86 229-328 36-123 (234)
259 COG1121 ZnuC ABC-type Mn/Zn tr 31.7 1.3E+02 0.0029 28.2 6.2 61 70-130 112-194 (254)
260 cd01822 Lysophospholipase_L1_l 31.7 3E+02 0.0065 22.8 8.1 66 60-133 36-109 (177)
261 cd05008 SIS_GlmS_GlmD_1 SIS (S 31.4 2.3E+02 0.005 22.3 7.0 66 65-133 4-82 (126)
262 TIGR03828 pfkB 1-phosphofructo 31.3 2.7E+02 0.0058 25.6 8.4 66 59-131 98-163 (304)
263 PLN02932 3-ketoacyl-CoA syntha 30.5 64 0.0014 33.1 4.2 55 80-139 158-216 (478)
264 PF07293 DUF1450: Protein of u 30.1 58 0.0013 24.9 2.9 38 198-235 32-73 (78)
265 PRK06756 flavodoxin; Provision 30.1 2.9E+02 0.0064 22.8 7.6 63 75-137 19-95 (148)
266 cd04795 SIS SIS domain. SIS (S 29.6 2.2E+02 0.0048 20.6 6.7 33 94-129 46-78 (87)
267 cd01744 GATase1_CPSase Small c 29.2 1.4E+02 0.0029 25.9 5.6 23 61-89 1-23 (178)
268 PRK13146 hisH imidazole glycer 29.1 2E+02 0.0044 25.7 6.8 42 58-103 1-49 (209)
269 PRK05569 flavodoxin; Provision 28.6 1.3E+02 0.0029 24.5 5.2 43 94-136 47-94 (141)
270 PRK02271 methylenetetrahydrome 28.5 5.2E+02 0.011 24.6 10.2 90 221-327 11-107 (325)
271 cd05569 PTS_IIB_fructose PTS_I 28.5 62 0.0013 25.4 2.9 38 67-104 6-62 (96)
272 COG0113 HemB Delta-aminolevuli 28.4 3.5E+02 0.0076 26.2 8.3 76 192-271 33-115 (330)
273 CHL00200 trpA tryptophan synth 28.2 1.3E+02 0.0027 28.3 5.5 79 73-153 131-233 (263)
274 TIGR03279 cyano_FeS_chp putati 28.1 30 0.00065 35.0 1.3 15 199-213 81-95 (433)
275 PRK09283 delta-aminolevulinic 27.8 2.6E+02 0.0055 27.2 7.4 50 219-271 54-111 (323)
276 cd07944 DRE_TIM_HOA_like 4-hyd 27.6 5E+02 0.011 24.1 9.5 83 221-314 135-218 (266)
277 TIGR00288 conserved hypothetic 27.5 1.7E+02 0.0036 25.5 5.7 53 75-133 68-137 (160)
278 TIGR01753 flav_short flavodoxi 27.2 1.5E+02 0.0033 23.8 5.3 44 94-137 44-92 (140)
279 PRK04296 thymidine kinase; Pro 27.1 2E+02 0.0044 25.1 6.3 42 93-136 76-117 (190)
280 PRK04539 ppnK inorganic polyph 27.0 4.8E+02 0.01 24.9 9.3 34 57-90 4-38 (296)
281 TIGR03217 4OH_2_O_val_ald 4-hy 27.0 2.5E+02 0.0055 27.2 7.5 83 221-313 140-222 (333)
282 PRK14004 hisH imidazole glycer 27.0 2E+02 0.0044 25.8 6.5 37 61-101 2-43 (210)
283 cd03321 mandelate_racemase Man 26.9 3E+02 0.0065 26.6 8.1 96 222-328 141-237 (355)
284 PLN02274 inosine-5'-monophosph 26.9 1.7E+02 0.0037 30.2 6.6 69 70-151 245-317 (505)
285 cd05009 SIS_GlmS_GlmD_2 SIS (S 26.8 2.8E+02 0.0061 22.5 7.0 66 63-130 16-94 (153)
286 TIGR01918 various_sel_PB selen 26.4 2.9E+02 0.0064 27.9 7.8 66 59-136 305-375 (431)
287 PRK10892 D-arabinose 5-phospha 26.4 3.1E+02 0.0067 26.0 8.0 71 59-134 48-131 (326)
288 cd00537 MTHFR Methylenetetrahy 26.3 5.2E+02 0.011 23.9 9.6 59 208-268 59-123 (274)
289 cd00384 ALAD_PBGS Porphobilino 26.3 3.1E+02 0.0067 26.6 7.7 56 212-271 40-103 (314)
290 KOG4306 Glycosylphosphatidylin 25.6 1.6E+02 0.0034 28.4 5.6 51 215-267 102-152 (306)
291 PRK06843 inosine 5-monophospha 25.4 1.9E+02 0.0041 29.0 6.4 55 95-152 165-223 (404)
292 PF00490 ALAD: Delta-aminolevu 25.2 1.8E+02 0.0039 28.3 5.9 58 213-271 47-111 (324)
293 cd01748 GATase1_IGP_Synthase T 25.0 1.9E+02 0.0042 25.3 5.9 70 61-135 1-80 (198)
294 PF13580 SIS_2: SIS domain; PD 25.0 98 0.0021 25.7 3.7 36 94-132 102-138 (138)
295 PF01081 Aldolase: KDPG and KH 24.9 3.5E+02 0.0076 24.2 7.5 85 218-324 14-98 (196)
296 COG0124 HisS Histidyl-tRNA syn 24.7 2E+02 0.0044 29.1 6.5 51 75-129 316-366 (429)
297 PRK15482 transcriptional regul 24.7 3.5E+02 0.0077 25.1 7.9 70 58-132 135-217 (285)
298 PRK09513 fruK 1-phosphofructok 24.7 4.1E+02 0.0089 24.7 8.4 62 63-131 106-167 (312)
299 cd06167 LabA_like LabA_like pr 24.5 1.4E+02 0.0031 24.5 4.7 56 67-134 77-132 (149)
300 COG2145 ThiM Hydroxyethylthiaz 24.5 96 0.0021 29.3 3.8 67 94-162 54-128 (265)
301 cd07945 DRE_TIM_CMS Leptospira 24.5 2.8E+02 0.0061 26.1 7.2 81 222-314 145-226 (280)
302 TIGR03294 FrhG coenzyme F420 h 24.4 63 0.0014 29.6 2.6 40 94-135 49-89 (228)
303 PRK14077 pnk inorganic polypho 24.3 5.5E+02 0.012 24.4 9.1 66 58-129 10-92 (287)
304 COG0041 PurE Phosphoribosylcar 24.2 2E+02 0.0044 25.0 5.4 52 72-134 12-66 (162)
305 cd07941 DRE_TIM_LeuA3 Desulfob 23.7 3.2E+02 0.0069 25.5 7.4 80 222-313 149-229 (273)
306 PRK00278 trpC indole-3-glycero 23.6 2.7E+02 0.0058 25.9 6.7 92 62-153 135-242 (260)
307 PRK13586 1-(5-phosphoribosyl)- 23.2 5.8E+02 0.012 23.3 8.8 91 225-330 31-122 (232)
308 cd03361 TOPRIM_TopoIA_RevGyr T 22.8 2.7E+02 0.0058 24.2 6.2 68 205-286 93-161 (170)
309 cd03174 DRE_TIM_metallolyase D 22.7 5.7E+02 0.012 23.0 10.9 85 219-317 14-99 (265)
310 cd07943 DRE_TIM_HOA 4-hydroxy- 22.6 3.9E+02 0.0085 24.6 7.7 82 221-314 138-220 (263)
311 cd05017 SIS_PGI_PMI_1 The memb 22.6 3.9E+02 0.0085 21.2 6.9 65 65-132 4-78 (119)
312 PF04028 DUF374: Domain of unk 22.6 2.6E+02 0.0056 21.0 5.2 47 72-131 19-65 (74)
313 cd07939 DRE_TIM_NifV Streptomy 22.5 6.1E+02 0.013 23.3 9.0 81 221-313 136-216 (259)
314 PRK13669 hypothetical protein; 22.2 88 0.0019 24.0 2.6 39 198-236 32-74 (78)
315 cd03316 MR_like Mandelate race 22.1 6.5E+02 0.014 24.1 9.4 97 222-326 139-238 (357)
316 PRK13525 glutamine amidotransf 22.1 2.2E+02 0.0047 25.1 5.6 72 58-135 1-81 (189)
317 PF12641 Flavodoxin_3: Flavodo 22.0 1.2E+02 0.0027 26.2 3.8 32 93-124 37-68 (160)
318 cd05565 PTS_IIB_lactose PTS_II 21.9 3.5E+02 0.0076 21.4 6.2 27 75-101 17-53 (99)
319 PRK13384 delta-aminolevulinic 21.9 3.4E+02 0.0074 26.4 7.1 56 212-271 50-113 (322)
320 COG0107 HisF Imidazoleglycerol 21.8 3.2E+02 0.0069 25.6 6.5 160 74-270 31-198 (256)
321 PF01715 IPPT: IPP transferase 21.3 78 0.0017 29.4 2.7 24 112-135 43-67 (253)
322 PRK13141 hisH imidazole glycer 21.3 2.8E+02 0.006 24.5 6.1 71 60-135 1-81 (205)
323 cd07940 DRE_TIM_IPMS 2-isoprop 21.1 4.4E+02 0.0095 24.4 7.7 83 221-314 140-224 (268)
324 cd07937 DRE_TIM_PC_TC_5S Pyruv 21.0 3.8E+02 0.0081 25.1 7.2 81 221-314 146-227 (275)
325 PF01973 MAF_flag10: Protein o 21.0 86 0.0019 26.8 2.7 16 234-249 151-166 (170)
326 PRK13585 1-(5-phosphoribosyl)- 20.9 3.7E+02 0.0081 24.1 7.1 89 226-328 34-123 (241)
327 PRK10886 DnaA initiator-associ 20.9 6E+02 0.013 22.6 8.4 61 94-160 108-173 (196)
328 PRK14075 pnk inorganic polypho 20.9 6.8E+02 0.015 23.2 9.3 54 67-129 7-66 (256)
329 PF08902 DUF1848: Domain of un 20.8 41 0.00089 31.8 0.6 8 202-209 257-264 (266)
330 TIGR03572 WbuZ glycosyl amidat 20.7 1.9E+02 0.0041 26.0 5.1 71 73-152 153-228 (232)
331 PF06906 DUF1272: Protein of u 20.7 27 0.00059 25.0 -0.4 9 202-210 25-33 (57)
332 cd03328 MR_like_3 Mandelate ra 20.6 6.3E+02 0.014 24.4 9.0 94 221-326 137-231 (352)
333 COG0647 NagD Predicted sugar p 20.6 3.1E+02 0.0067 25.9 6.5 27 75-101 99-127 (269)
334 PRK11302 DNA-binding transcrip 20.6 4E+02 0.0087 24.5 7.3 70 58-132 128-210 (284)
335 TIGR01917 gly_red_sel_B glycin 20.5 2.9E+02 0.0062 28.0 6.5 66 59-136 305-375 (431)
336 cd01096 Alkanal_monooxygenase 20.4 6.6E+02 0.014 23.7 8.9 92 223-326 21-120 (315)
337 PF13607 Succ_CoA_lig: Succiny 20.3 3.3E+02 0.0071 22.9 6.0 57 62-130 30-86 (138)
338 PF00290 Trp_syntA: Tryptophan 20.2 2.9E+02 0.0063 25.9 6.2 61 98-164 167-235 (259)
339 TIGR00035 asp_race aspartate r 20.1 63 0.0014 29.3 1.8 72 58-134 117-196 (229)
No 1
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=100.00 E-value=5.1e-71 Score=519.69 Aligned_cols=325 Identities=66% Similarity=1.061 Sum_probs=300.8
Q ss_pred CCchhHHhhcCCCCCCCCCCCCCCCccccccccCCCCCccccCccccCCCCCCCCCCCceEEEEeeCCCCChhHHHHHHH
Q 019874 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAG 80 (334)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~GC~~N~~Dse~m~~ 80 (334)
|||||||+++ +|++|++|++.++ .|+||.||+...+...+.+...+.++.|||++||||+||||++|++|||+|+|
T Consensus 1 ~ddiedl~s~---~d~kp~~r~~~~k-~v~pk~~kr~~~k~~q~ee~~~ps~s~ipgtqki~iktwgcshnnsdseymag 76 (547)
T KOG4355|consen 1 MDDIEDLLSG---GDAKPGFRLPLNK-VVNPKTNKRISSKPDQIEESNRPSSSKIPGTQKIYIKTWGCSHNNSDSEYMAG 76 (547)
T ss_pred CccHHHHhhC---CCCCCcccccccc-ccccccccccccCchhhhhcCCCccccCCCccEEEEEeecccCCCchhHHHhh
Confidence 7999999976 7999999998554 59999988754332223333345689999999999999999999999999999
Q ss_pred HHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccCCChhhhccCccEEEcCCChHHHHH
Q 019874 81 QLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVE 160 (334)
Q Consensus 81 ~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~~~~~~~~~~~d~vvG~~e~~~i~e 160 (334)
+|+++||.+++ +++||+|++|||||+++++..+++.|.+.++.++++|++||.+|..|+...+.+.+|+|.++++++.|
T Consensus 77 qlaaygy~lte-~eeadlwllnsctvknpsed~frn~i~~g~~~~k~~viagcvpqg~p~~dyl~glsvigvqqidrvve 155 (547)
T KOG4355|consen 77 QLAAYGYALTE-PEEADLWLLNSCTVKNPSEDAFRNLITRGRSGKKPLVIAGCVPQGSPDLDYLEGLSVIGVQQIDRVVE 155 (547)
T ss_pred hHHhhhhccCC-cccccEEEecccccCCchHHHHHHHHHhhhcCCCceEEEecCCCCCcchhhhcCceEeehhhhhHHHH
Confidence 99999999998 89999999999999999999999999999998999999999999999988888889999999999999
Q ss_pred HHHHHhcCCceeecccccCCCCCCccccccceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcE
Q 019874 161 VVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240 (334)
Q Consensus 161 ~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~ke 240 (334)
++++.++|+.++++.+...+++++|+.|++++..+|.|+.||.+.|+||.+.++||.+-|+|++++++.++...+.|+.|
T Consensus 156 vveetlkghsvrll~rr~~galdlpkvrknplieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~e 235 (547)
T KOG4355|consen 156 VVEETLKGHSVRLLTRRTLGALDLPKVRKNPLIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCE 235 (547)
T ss_pred HHHHHhccceEeeeecccccccCchhhccCCceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEE
Confidence 99999999999988777778899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHH
Q 019874 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320 (334)
Q Consensus 241 i~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vL 320 (334)
||+++.|+++||+|++.++..||+++.+.+| ...++|++++||.+|.+++++++...++|+++.+||+|+|||||.||
T Consensus 236 IwltsedTgaygrdig~slp~ll~klv~~iP--e~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl 313 (547)
T KOG4355|consen 236 IWLTSEDTGAYGRDIGKSLPKLLWKLVEVIP--ESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVL 313 (547)
T ss_pred EEecccccchhhhhhhhhhHHHHHHHHHhcc--hhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHH
Confidence 9999999999999999999999999999998 67899999999999999999999888999999999999999999999
Q ss_pred HHhCCCCCcCcc
Q 019874 321 SVSQKIVPTKSV 332 (334)
Q Consensus 321 k~M~R~~t~e~v 332 (334)
..|+|.|+..++
T Consensus 314 ~emkreyc~~df 325 (547)
T KOG4355|consen 314 TEMKREYCNFDF 325 (547)
T ss_pred HHHHHHHhhhhH
Confidence 999999987664
No 2
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-70 Score=533.65 Aligned_cols=268 Identities=34% Similarity=0.607 Sum_probs=238.3
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCC-eeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCC--CCEEEEccc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCV 134 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~-~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~--~~VVv~GC~ 134 (334)
|+||||+||||+||++|||.|++.|.+.|| +.++++++||+||||||+|+..|++++++.|+++++.+ .+|+|+||+
T Consensus 2 ~~kv~i~T~GC~~N~~DSe~m~~~L~~~G~~~~~~~~~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~p~~~iiVtGC~ 81 (437)
T COG0621 2 MKKVYIETLGCQMNLYDSERMAGLLEAAGYEELVEDPEEADVVIINTCAVREKAEQKVRSAIGELKKLKPDAKIIVTGCL 81 (437)
T ss_pred CceEEEEecCCCccHHHHHHHHHHHHHcCCccccCCcccCCEEEEecCeeeehHHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 689999999999999999999999999999 69999999999999999999999999999999998765 579999999
Q ss_pred cCCChhh-hcc-CccEEEcCCChHHHHHHHHHHhcCCcee--ecc---cccCCCCCCccccccceeeeeeccCCCCCCCc
Q 019874 135 PQGSRDL-KEL-EGVSIVGVQQIDRVVEVVEETLKGHEVR--LLH---RKKLPALDLPKVRRNKFVEILPINVGCLGACT 207 (334)
Q Consensus 135 a~~~~~~-~~~-~~d~vvG~~e~~~i~e~l~~~~~g~~~~--~~~---~~~~~~~~~p~~~~~~~~~~v~isrGC~~~Cs 207 (334)
||..+++ ... .+|+|+|++++++++++|++...+.... ... ...+. .+|..+....+|+|+|+.||+++||
T Consensus 82 aq~~~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~A~v~I~eGCn~~Ct 159 (437)
T COG0621 82 AQAEEEILERAPEVDIVLGPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKFD--KLPPRREGGVRAFVKIQEGCNKFCT 159 (437)
T ss_pred cccCHHHHhhCCCceEEECCccHHHHHHHHHHHhhcccccccccccccccccc--cCCCCcCCCeEEEEEhhcCcCCCCC
Confidence 9999664 345 4789999999999999999886554322 111 11111 1222256678999999999999999
Q ss_pred cccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC---CCHHHHHHHHHHhCCCCCCceEEEeecC
Q 019874 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTN 284 (334)
Q Consensus 208 fC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~---~~l~~Ll~~l~~~i~~~~~~~ir~~~~~ 284 (334)
||++|++||+.||||+++|++|++.|+++|+|||+|+|||+++||.|++ .+|++||+.|.+ ++ |+.|+|++|+|
T Consensus 160 fCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~-I~--G~~riR~~~~~ 236 (437)
T COG0621 160 FCIIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK-IP--GIERIRFGSSH 236 (437)
T ss_pred eeeeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc-CC--CceEEEEecCC
Confidence 9999999999999999999999999999999999999999999999985 789999999987 88 89999999999
Q ss_pred CCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 285 p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
|..+++++ +.++++.|++|+|||||+|||||+|||+|+|+||.+++
T Consensus 237 P~~~~d~l--I~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~ 282 (437)
T COG0621 237 PLEFTDDL--IEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEY 282 (437)
T ss_pred chhcCHHH--HHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHH
Confidence 99999988 88888888999999999999999999999999999875
No 3
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.8e-60 Score=475.00 Aligned_cols=272 Identities=25% Similarity=0.429 Sum_probs=228.0
Q ss_pred CCCceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHH---HhcCC--CCEEE
Q 019874 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK---CKSAK--KPLVV 130 (334)
Q Consensus 56 ~~~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~---~k~~~--~~VVv 130 (334)
|++++|||+||||++|++|||.|++.|.+.||++++++++||+||||||||++.|++++++.|++ +++.+ .+|||
T Consensus 4 ~~~~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~~~~ADviiiNTC~v~~~A~~k~~~~i~~~~~~k~~~~~~~ivv 83 (445)
T PRK14340 4 RMGRKFYIHTFGCQMNQADSEIITALLQDEGYVPAASEEDADIVLLNTCAVRENAVERIGHYLQHLKGAKRRRKGLLVGV 83 (445)
T ss_pred CCCcEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeccHHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 45578999999999999999999999999999999999999999999999999999999999764 44454 35999
Q ss_pred EccccCCChhh--hcc-CccEEEcCCChHHHHHHHHHHhcCCceeecccccCCCC-CCccccccceeeeeeccCCCCCCC
Q 019874 131 AGCVPQGSRDL--KEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGAC 206 (334)
Q Consensus 131 ~GC~a~~~~~~--~~~-~~d~vvG~~e~~~i~e~l~~~~~g~~~~~~~~~~~~~~-~~p~~~~~~~~~~v~isrGC~~~C 206 (334)
|||+||.+++. +.+ .+|.|+|+.++..|++++.....+.....+.....+.+ .+|..+.....++|+|+||||++|
T Consensus 84 ~GC~a~~~~~e~~~~~p~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~isrGC~~~C 163 (445)
T PRK14340 84 LGCVPQYEREEMFSMFPVIDFLAGPDTYRVLPGLIADAREGARPAALDFNQSETYAGIEPVRSGSISAFVPVMRGCNNMC 163 (445)
T ss_pred eCcccccchHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCcceeccccccccccccccccCCCcEEEEEeccCCCCCC
Confidence 99999999974 334 57899999999999999987655432222111111111 122222334578999999999999
Q ss_pred ccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCC-CCCHHHHHHHHHHhCCCCCCceEEEeecCC
Q 019874 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285 (334)
Q Consensus 207 sfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~-~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p 285 (334)
+||++|.++|++|+||+++|++|++.+++.|+++|+|+|+|+++||.|. ...|.+||++|.+ +. +..|+|+++.+|
T Consensus 164 sFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~-~~--~~~rir~~~~~p 240 (445)
T PRK14340 164 AFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSR-AA--PEMRIRFTTSHP 240 (445)
T ss_pred CCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhh-cC--CCcEEEEccCCh
Confidence 9999999999999999999999999999999999999999999998764 3569999999975 33 456999999999
Q ss_pred CChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 286 ~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
..+++++ |..|++++++|++||||+|||||++|+.|||+||.+++
T Consensus 241 ~~l~~el--l~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~ 285 (445)
T PRK14340 241 KDISESL--VRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEY 285 (445)
T ss_pred hhcCHHH--HHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHH
Confidence 9999888 78888777899999999999999999999999998765
No 4
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=7.7e-60 Score=475.36 Aligned_cols=272 Identities=29% Similarity=0.500 Sum_probs=229.6
Q ss_pred CCCCceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHH---HHhcCC--CCEE
Q 019874 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA---KCKSAK--KPLV 129 (334)
Q Consensus 55 ~~~~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~---~~k~~~--~~VV 129 (334)
++.+++|||+||||+||++|||.|++.|.+.||+.++++++||+||||||||++.|+++++..|. ++++++ ..|+
T Consensus 63 ~~~~~~~~i~T~GC~~N~~Dse~~~~~L~~~Gy~~~~~~~~ADviiiNTC~V~~~Ae~k~~~~i~~l~~~k~~~p~~~i~ 142 (509)
T PRK14327 63 MGNGRKFYIRTYGCQMNEHDTEVMAGIFEALGYEPTDDTEDADVILLNTCAIRENAENKVFGEIGHLKHLKRENPDLLIG 142 (509)
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHCcCEECCCcCCCCEEEEECCCCccHHHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999984 445554 4589
Q ss_pred EEccccCCCh---hh-hcc-CccEEEcCCChHHHHHHHHHHhcCCce--eecccccCCCCCCccccccceeeeeeccCCC
Q 019874 130 VAGCVPQGSR---DL-KEL-EGVSIVGVQQIDRVVEVVEETLKGHEV--RLLHRKKLPALDLPKVRRNKFVEILPINVGC 202 (334)
Q Consensus 130 v~GC~a~~~~---~~-~~~-~~d~vvG~~e~~~i~e~l~~~~~g~~~--~~~~~~~~~~~~~p~~~~~~~~~~v~isrGC 202 (334)
|+|||||..+ ++ +.+ .+|.|+|++++..+++++...+.+... ...........++|..+.....++|+|++||
T Consensus 143 v~GCmaq~~~~~~~~~~~~p~vd~v~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~v~I~~GC 222 (509)
T PRK14327 143 VCGCMSQEESVVNKILKKYQHVDMIFGTHNIHRLPEILKEAYFSKEMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGC 222 (509)
T ss_pred EEcchhcCcCchHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCCceeeccccccccccccccccCCCeEEEEEecCCC
Confidence 9999999998 44 344 478999999999999999876644321 1111100001123444445678999999999
Q ss_pred CCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC---CCHHHHHHHHHHhCCCCCCceEE
Q 019874 203 LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLR 279 (334)
Q Consensus 203 ~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~---~~l~~Ll~~l~~~i~~~~~~~ir 279 (334)
|++|+||++|+++|++|+||+++|++|++.+++.|++||+|+|+|+++||.|.. ..|.+||+.|.+ + ++.|+|
T Consensus 223 ~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~-~---~i~~ir 298 (509)
T PRK14327 223 DKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRK-I---DIPRVR 298 (509)
T ss_pred CCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHh-C---CCceEE
Confidence 999999999999999999999999999999999999999999999999997752 358899999975 4 577999
Q ss_pred EeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 280 ~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+++.+|..+++++ |..|++.++.|++||||+||||+++|+.|||+||.+++
T Consensus 299 ~~s~~P~~i~del--i~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~ 349 (509)
T PRK14327 299 FTTSHPRDFDDHL--IEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESY 349 (509)
T ss_pred EeecCcccCCHHH--HHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHH
Confidence 9999999999988 78888777779999999999999999999999998765
No 5
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.3e-59 Score=474.82 Aligned_cols=274 Identities=28% Similarity=0.482 Sum_probs=229.5
Q ss_pred CCCCCCceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHH---HHHhcC--CCC
Q 019874 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSA--KKP 127 (334)
Q Consensus 53 ~~~~~~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i---~~~k~~--~~~ 127 (334)
+..++.++|||+||||+||++|||.|++.|.+.||++++++++||+||||||||+..|+++++..+ +++|+. +.+
T Consensus 8 ~~~~~~~~~~i~T~GC~~N~~dse~~~~~L~~~G~~~~~~~e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~~~p~~~ 87 (502)
T PRK14326 8 AAARGARTYQVRTYGCQMNVHDSERLAGLLEAAGYVRAAEGQDADVVVFNTCAVRENADNRLYGNLGHLAPVKRANPGMQ 87 (502)
T ss_pred ccCCCCCEEEEEecCCCCcHHHHHHHHHHHHHCCCEECCCcCCCCEEEEECCCeeehHHHHHHHHHHHHHHHHHhCCCCE
Confidence 445667899999999999999999999999999999999999999999999999999999999555 444543 568
Q ss_pred EEEEccccCCChhh-h-cc-CccEEEcCCChHHHHHHHHHHhcCCceeeccc---ccCCCCCCccccccceeeeeeccCC
Q 019874 128 LVVAGCVPQGSRDL-K-EL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR---KKLPALDLPKVRRNKFVEILPINVG 201 (334)
Q Consensus 128 VVv~GC~a~~~~~~-~-~~-~~d~vvG~~e~~~i~e~l~~~~~g~~~~~~~~---~~~~~~~~p~~~~~~~~~~v~isrG 201 (334)
|||||||||.+|+. . .. .+|.|+|+.++..|++++++...+.....+.. ..+|. .+|..+...+.++|+|+||
T Consensus 88 VvvgGc~a~~~~ee~~~~~p~VD~Vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~p~-~~p~~~~~~~~a~v~isrG 166 (502)
T PRK14326 88 IAVGGCLAQKDRDTILKRAPWVDVVFGTHNIGSLPTLLERARHNKEAQVEIAESLEQFPS-TLPARRESAYAAWVSISVG 166 (502)
T ss_pred EEEECcccccCHHHHHhhCCCCeEEECCCCHHHHHHHHHHHhhCCCcccccccccccccc-ccccccCCCceEEEEEccC
Confidence 99999999999974 3 33 47899999999999999988765543211110 11111 1232223345689999999
Q ss_pred CCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC--CCHHHHHHHHHHhCCCCCCceEE
Q 019874 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLR 279 (334)
Q Consensus 202 C~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~ir 279 (334)
||++|+||++|+++|+.|+||+++|++|++.+++.|+++|+|+|+|+++||.|.. ..|.+||+.+.. ++ +..|+|
T Consensus 167 Cp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~-i~--~l~~ir 243 (502)
T PRK14326 167 CNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGE-ID--GLERVR 243 (502)
T ss_pred CCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHh-cC--CccEEE
Confidence 9999999999999999999999999999999999999999999999999998753 358899998865 55 678999
Q ss_pred EeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 280 ~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+++++|..+++++ |..|++.+++|++||||+|||||++|+.|||+|+.+++
T Consensus 244 ~~~~~p~~~~~el--l~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~ 294 (502)
T PRK14326 244 FTSPHPAEFTDDV--IEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERF 294 (502)
T ss_pred EeccChhhCCHHH--HHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHH
Confidence 9999999999887 88888776789999999999999999999999998765
No 6
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=3.2e-59 Score=466.30 Aligned_cols=269 Identities=21% Similarity=0.397 Sum_probs=225.4
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHH---hcC--CCCEEEEc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVAG 132 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~---k~~--~~~VVv~G 132 (334)
+++|||+||||+||++|||.|.+.|.+.||++++++++||+||||||||++.|++++++.+..+ ++. +.+|||||
T Consensus 10 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADvviiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~ivv~G 89 (449)
T PRK14332 10 LGKVYIETYGCQMNEYDSGIVSSLMRDAEYSTSNDPENSDIIFLNTCAIRENAHAKIYNRLQSLGYLKKRNPNLVIGVLG 89 (449)
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEEccCeechHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5789999999999999999999999999999999999999999999999999999999876544 443 35699999
Q ss_pred cccCCChhhh--c-cCccEEEcCCChHHHHHHHHHHhcCCceeeccc-ccCCCC-CCccccccceeeeeeccCCCCCCCc
Q 019874 133 CVPQGSRDLK--E-LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPAL-DLPKVRRNKFVEILPINVGCLGACT 207 (334)
Q Consensus 133 C~a~~~~~~~--~-~~~d~vvG~~e~~~i~e~l~~~~~g~~~~~~~~-~~~~~~-~~p~~~~~~~~~~v~isrGC~~~Cs 207 (334)
||||.+|+.. . .++|.|+|..++..++++++....|........ .....+ ++|........++|+|+||||++|+
T Consensus 90 C~a~~~~e~l~~~~~~vD~vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~l~isrGC~~~Cs 169 (449)
T PRK14332 90 CMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRNGEKSISLTRLSKIETYDEIEPRVVNGIQAFVTIMRGCNNFCT 169 (449)
T ss_pred cccccchHHHhhccCCceEEECCCCHHHHHHHHHHHhcCCceeeecccccccccccccccccCCceEEEEecCCcCCCCC
Confidence 9999999742 2 357899999999999999987765543211110 000011 1221112345789999999999999
Q ss_pred cccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCC
Q 019874 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287 (334)
Q Consensus 208 fC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~ 287 (334)
||++|+++|++||||+|+|++|++.+++.|+++|+|+|+|++.||.+. ..|.+||+++.+ ++ +..|+|+++.+|..
T Consensus 170 FC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~-~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~ 245 (449)
T PRK14332 170 FCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQS-TDFAGLIQMLLD-ET--TIERIRFTSPHPKD 245 (449)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCc-ccHHHHHHHHhc-CC--CcceEEEECCCccc
Confidence 999999999999999999999999999999999999999999998753 469999999875 44 67899999999999
Q ss_pred hhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 288 i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+++++ +..|++.+++|+++|||+|||||++|++|||+||.+++
T Consensus 246 ~~~el--l~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~ 288 (449)
T PRK14332 246 FPDHL--LSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEF 288 (449)
T ss_pred CCHHH--HHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHH
Confidence 99887 77788777789999999999999999999999998765
No 7
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=4.1e-59 Score=464.54 Aligned_cols=267 Identities=31% Similarity=0.534 Sum_probs=228.5
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHH----hcCCCCEEEEcccc
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC----KSAKKPLVVAGCVP 135 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~----k~~~~~VVv~GC~a 135 (334)
+|||+||||++|++|||.|++.|.+.||+.++++++||+|+||||+|+..|+++++++++++ ++++++||||||||
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aDlvvinTC~v~~~a~~~~~~~i~~~~~~~r~~~~~vvv~Gc~a 81 (434)
T PRK14330 2 KFYIKTFGCQMNENDSETMAGLLKKEGFEPASNPEEADVVIINTCAVRRKSEEKAYSELGQLLKLKRKKNLIIGVAGCVA 81 (434)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEccceeehHHHHHHHHHHHHHHhcccCCCEEEEECccc
Confidence 79999999999999999999999999999999999999999999999999999999999999 56688999999999
Q ss_pred CCChhh-hccCccEEEcCCChHHHHHHHHHHhcCCceeecccccCCCC--CCccccccceeeeeeccCCCCCCCcccccc
Q 019874 136 QGSRDL-KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTK 212 (334)
Q Consensus 136 ~~~~~~-~~~~~d~vvG~~e~~~i~e~l~~~~~g~~~~~~~~~~~~~~--~~p~~~~~~~~~~v~isrGC~~~CsfC~ip 212 (334)
|..|++ ....+|+|+|+.++..|+++|++...|... .+.....+.. ..|..+....+++|+|+||||++|+||++|
T Consensus 82 ~~~~ee~~~~~~d~vvg~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~i~rGC~~~CsFC~ip 160 (434)
T PRK14330 82 EKEREKLLKRGADFVIGTRAVPKVTEAVKRALNGEKV-ALFEDKLDEITYELPRIRSSKHHAWVTIIYGCNRFCTYCIVP 160 (434)
T ss_pred cCchhhHHhcCCcEEEcCCCHHHHHHHHHHHhcCCce-EeecccccccccccccccCCCcEEEEEcccCCCCCCCCCceE
Confidence 999975 344567899999889999999988766542 2211111111 112112234678999999999999999999
Q ss_pred ccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCC--CCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhh
Q 019874 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290 (334)
Q Consensus 213 ~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~--~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~ 290 (334)
+++|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.++ ...+.+||+.+.+ ++ +..|+|+++.+|..+++
T Consensus 161 ~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~-~~--~~~~~~~~~~~p~~~~~ 237 (434)
T PRK14330 161 YTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK-IE--GIERIWFLTSYPTDFSD 237 (434)
T ss_pred CcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHh-cC--CceEEEEecCChhhcCH
Confidence 9999999999999999999999999999999999999999775 3579999998865 55 67888988899999988
Q ss_pred hHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 291 ~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
++ ++.|++.+++|++||||+||||+++|+.|||+|+.+++
T Consensus 238 el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~ 277 (434)
T PRK14330 238 EL--IEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEY 277 (434)
T ss_pred HH--HHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHH
Confidence 77 77777776779999999999999999999999998764
No 8
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.9e-58 Score=463.15 Aligned_cols=275 Identities=25% Similarity=0.422 Sum_probs=227.7
Q ss_pred CCCCCCceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHH---HHHhcC--CCC
Q 019874 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSA--KKP 127 (334)
Q Consensus 53 ~~~~~~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i---~~~k~~--~~~ 127 (334)
+..|++++|||+||||++|++|||.|++.|.+.||++++++++||+|+||||||+++|++++++.| +++++. +.+
T Consensus 18 ~~~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ 97 (467)
T PRK14329 18 AKPKNTKKLFIESYGCQMNFADSEIVASILQMAGYNTTENLEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKKKNPKLI 97 (467)
T ss_pred ccCCCCCEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCcceechHHHHHHHHHHHHHHHHhhCCCcE
Confidence 346788999999999999999999999999999999999999999999999999999999999999 555554 357
Q ss_pred EEEEccccCCChhh-h-ccC-ccEEEcCCChHHHHHHHHHHhcCCceeec--c-cccCCCCCCccccccceeeeeeccCC
Q 019874 128 LVVAGCVPQGSRDL-K-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLL--H-RKKLPALDLPKVRRNKFVEILPINVG 201 (334)
Q Consensus 128 VVv~GC~a~~~~~~-~-~~~-~d~vvG~~e~~~i~e~l~~~~~g~~~~~~--~-~~~~~~~~~p~~~~~~~~~~v~isrG 201 (334)
|||||||||.+|+. . ..+ +|.|+|......|+++++....+...... . ...+.....+.......+++|+|+||
T Consensus 98 ivvgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~isrG 177 (467)
T PRK14329 98 VGVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVEEGRKAINVILSKEETYADISPVRLGGNGVSAFVSIMRG 177 (467)
T ss_pred EEEECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHhcCCcceeccccccccccccccccccCCCcEEEEEeccC
Confidence 99999999999874 3 344 78888888889999999876555322111 0 00111110111112346789999999
Q ss_pred CCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC-------CCHHHHHHHHHHhCCCCC
Q 019874 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILLNAIVAELPPDG 274 (334)
Q Consensus 202 C~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~-------~~l~~Ll~~l~~~i~~~~ 274 (334)
||++|+||++|+++|++|+||+++|++|++.+.+.|+++|+|+|+|+++||.+.+ ..|.+||+.|.+.. +
T Consensus 178 Cp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~---~ 254 (467)
T PRK14329 178 CDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAV---P 254 (467)
T ss_pred cccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcC---C
Confidence 9999999999999999999999999999999999999999999999999987632 36899999987533 3
Q ss_pred CceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 275 ~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
..|+|+++.+|..+++++ |..|++.++||++||||+||||+++|+.|||+||.+++
T Consensus 255 ~~~ir~~~~~p~~l~~el--l~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~ 310 (467)
T PRK14329 255 DMRIRFSTSHPKDMTDDV--LEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWY 310 (467)
T ss_pred CcEEEEecCCcccCCHHH--HHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHH
Confidence 468999999999999877 78888777799999999999999999999999998754
No 9
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2e-58 Score=461.83 Aligned_cols=269 Identities=25% Similarity=0.441 Sum_probs=220.5
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHH---hcC-CCCEEEEcccc
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA-KKPLVVAGCVP 135 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~---k~~-~~~VVv~GC~a 135 (334)
+|||+||||+||++|||.|++.|.+.||++++++++||+|||||||||+.|++++++.+..+ ++. +.+||||||||
T Consensus 2 ~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~A~~k~~~~~~~~~~~k~~~~~~ivv~GC~a 81 (455)
T PRK14335 2 TYFFETYGCQMNVAESASMEQLLLARGWTKAVDAETCDVLIINTCSVRITAETRVFGRLGLFSSLKKKRAFFIILMGCMA 81 (455)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceechHHHHHHHHHHHHHHhhhCCCcEEEEecccc
Confidence 79999999999999999999999999999999999999999999999999999988855443 322 35699999999
Q ss_pred CCChhh--hcc-CccEEEcCCChHHHHHHHHHHhcC---Cceee------cccccCCCCC-Cccc-cccceeeeeeccCC
Q 019874 136 QGSRDL--KEL-EGVSIVGVQQIDRVVEVVEETLKG---HEVRL------LHRKKLPALD-LPKV-RRNKFVEILPINVG 201 (334)
Q Consensus 136 ~~~~~~--~~~-~~d~vvG~~e~~~i~e~l~~~~~g---~~~~~------~~~~~~~~~~-~p~~-~~~~~~~~v~isrG 201 (334)
|.+++. ..+ ++|+|+|++++..|++++++...+ ..... +...++|... +|.. +.....++|+|+||
T Consensus 82 ~~~~~e~~~~~p~vd~v~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~I~rG 161 (455)
T PRK14335 82 ERLHDEIQKEFPRIDYVVGTFAHARLESIFQEIEAKLKQDDYRFEFISERYREHPVSGYRFFPSSYSEGSFQSFIPIMNG 161 (455)
T ss_pred cchHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhhcccccceecccccccccccccccccCcccccCCCceEEEEhhcC
Confidence 999974 334 588999999999999998765321 10000 0001112111 1211 12356789999999
Q ss_pred CCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCC-CC-C--CCHHHHHHHHHHh---CCCCC
Q 019874 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DI-G--VNLPILLNAIVAE---LPPDG 274 (334)
Q Consensus 202 C~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~-d~-~--~~l~~Ll~~l~~~---i~~~~ 274 (334)
||++|+||++|+++|+.|+||+++|++|++.+.+.|+++|+|+|+|++.||. +. + ..+.+||++|... .. +
T Consensus 162 C~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~--~ 239 (455)
T PRK14335 162 CNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTD--Q 239 (455)
T ss_pred CCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccC--C
Confidence 9999999999999999999999999999999999999999999999999964 32 1 3689999998521 23 5
Q ss_pred CceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 275 ~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+.|+|+++++|..+++++ |..|++.++||+++|||+||||+++|+.|||+|+.+++
T Consensus 240 i~~ir~~s~~p~~i~~el--l~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~ 295 (455)
T PRK14335 240 IRWIRFMSSHPKDLSDDL--IATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHY 295 (455)
T ss_pred ceEEEEeecCcccCCHHH--HHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHH
Confidence 789999999999999988 88888777899999999999999999999999998865
No 10
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=7.5e-58 Score=456.70 Aligned_cols=269 Identities=26% Similarity=0.451 Sum_probs=224.1
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHH---hcC--CCCEEEEc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVAG 132 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~---k~~--~~~VVv~G 132 (334)
.++|||+||||++|++|||.|++.|.+.||++++. ++||+||||||||++.|++++++.|.++ ++. +.+|||||
T Consensus 3 ~~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~-~~ADiiiiNTC~v~~~A~~~~~~~i~~~~~~k~~~p~~~ivv~G 81 (446)
T PRK14337 3 DRTFHIITFGCQMNVNDSDWLARALVARGFTEAPE-EEARVFIVNTCSVRDKPEQKVYSLLGRIRHATKKNPDVFVAVGG 81 (446)
T ss_pred CcEEEEEeeCCCCcHHHHHHHHHHHHHCCCEECCc-CCCCEEEEeccCeecHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 35899999999999999999999999999999885 7899999999999999999999997666 444 45799999
Q ss_pred cccCCChhh--hcc-CccEEEcCCChHHHHHHHHHHhcCCceee-ccc--ccCCCCC-CccccccceeeeeeccCCCCCC
Q 019874 133 CVPQGSRDL--KEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRL-LHR--KKLPALD-LPKVRRNKFVEILPINVGCLGA 205 (334)
Q Consensus 133 C~a~~~~~~--~~~-~~d~vvG~~e~~~i~e~l~~~~~g~~~~~-~~~--~~~~~~~-~p~~~~~~~~~~v~isrGC~~~ 205 (334)
|+||.+++. ..+ .+|.|+|..++..++++++....+..... +.. ..++... ++.....+..++|+|+||||++
T Consensus 82 C~a~~~~~~~~~~~p~vd~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~i~rGC~~~ 161 (446)
T PRK14337 82 CVAQQIGSGFFSRFPQVRLVFGTDGIAMAPQALERLAEEPDLRLSLLDFSEHYPEREALWGNGTVPASAFVNIMQGCDNF 161 (446)
T ss_pred CccccccHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCCceecccccccccccccccccccCCCcEEEEEeccCCCCC
Confidence 999998863 344 57899999999999999987653322111 100 0111111 1111223567899999999999
Q ss_pred CccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCC---CCCHHHHHHHHHHhCCCCCCceEEEee
Q 019874 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIGM 282 (334)
Q Consensus 206 CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~---~~~l~~Ll~~l~~~i~~~~~~~ir~~~ 282 (334)
|+||++|+++|++|+||+++|++|++.+++.|++||+|+|+|++.||.|. +..|.+||++|.+ ++ +..|+|+++
T Consensus 162 CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~-~~--g~~~ir~~~ 238 (446)
T PRK14337 162 CAYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAA-LP--GLERLRFTT 238 (446)
T ss_pred CcCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHh-cC--CCcEEEEcc
Confidence 99999999999999999999999999999999999999999999999874 2579999999975 56 677999999
Q ss_pred cCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 283 ~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
.+|..+++++ +..|++.+++|++||||+||||+++|+.|||+|+.+++
T Consensus 239 ~~p~~i~~el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~ 286 (446)
T PRK14337 239 PHPKDIAPEV--IEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARY 286 (446)
T ss_pred CCcccCCHHH--HHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHH
Confidence 9999999887 77787767799999999999999999999999998764
No 11
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=8.8e-58 Score=456.50 Aligned_cols=268 Identities=30% Similarity=0.520 Sum_probs=227.2
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHH---hcC--CCCEEEEc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVAG 132 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~---k~~--~~~VVv~G 132 (334)
.++|||+||||++|++|||.|.+.|.+.||++++++++||+|||||||||+.|++++++.|+++ ++. +.+|||||
T Consensus 6 ~~~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADiiiiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvv~G 85 (448)
T PRK14333 6 RRSYWITTFGCQMNKADSERMAGILEDMGYQWAEDELQADLVLYNTCTIRDNAEQKVYSYLGRQAKRKHKNPDLTLVVAG 85 (448)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 3699999999999999999999999999999999999999999999999999999999888766 333 35799999
Q ss_pred cccCCChhh-h-cc-CccEEEcCCChHHHHHHHHHHhcCCceeecccccCCCC-CCcccc-ccceeeeeeccCCCCCCCc
Q 019874 133 CVPQGSRDL-K-EL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR-RNKFVEILPINVGCLGACT 207 (334)
Q Consensus 133 C~a~~~~~~-~-~~-~~d~vvG~~e~~~i~e~l~~~~~g~~~~~~~~~~~~~~-~~p~~~-~~~~~~~v~isrGC~~~Cs 207 (334)
||||..|+. . .. .+|.|+|++++..|++++++...|... +.....+.+ ++|.++ .....++|+|++|||++|+
T Consensus 86 c~a~~~~~~~~~~~p~vD~v~g~~~~~~~~~ll~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~a~i~i~~GC~~~Cs 163 (448)
T PRK14333 86 CVAQQEGESLLRRVPELDLVMGPQHANRLEDLLEQVDAGNQV--VATEEIHILEDITKPRRDSSITAWVNVIYGCNERCT 163 (448)
T ss_pred ccCccCHHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCce--eecccccccccccccccCCCeeEEEEhhcCCCCCCC
Confidence 999999974 3 34 478999999999999999887655422 111111111 222222 1235789999999999999
Q ss_pred cccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC---------CCHHHHHHHHHHhCCCCCCceE
Q 019874 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---------VNLPILLNAIVAELPPDGSTML 278 (334)
Q Consensus 208 fC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~---------~~l~~Ll~~l~~~i~~~~~~~i 278 (334)
||++|+++|+.|+||+++|++|++.+.+.|+++|+|+|+|+++||.|++ ..|.+||+.|.+ ++ ++.|+
T Consensus 164 FC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~-~~--~~~ri 240 (448)
T PRK14333 164 YCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHD-VE--GIERI 240 (448)
T ss_pred CCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHh-cC--CCeEE
Confidence 9999999999999999999999999999999999999999999987642 269999999975 66 77899
Q ss_pred EEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 279 r~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
|+++.+|..+++++ +..|++.+++|+++|||+||||+++|+.|||+||.+++
T Consensus 241 r~~~~~p~~~~~el--i~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~ 292 (448)
T PRK14333 241 RFATSHPRYFTERL--IKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKY 292 (448)
T ss_pred EECCCChhhhhHHH--HHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHH
Confidence 99889999999888 77787777899999999999999999999999998865
No 12
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=100.00 E-value=1.1e-57 Score=452.45 Aligned_cols=265 Identities=48% Similarity=0.805 Sum_probs=222.5
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccCCCh
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSR 139 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~~~~ 139 (334)
++||+||||+||++|||.|++.|.+.||++++++++||+|+||||||+..|++++++.|+++++.+++|||||||||.+|
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADviiinTC~v~~~a~~~~~~~i~~~~~~~~~vvv~GC~a~~~~ 80 (420)
T TIGR01578 1 KVYVETYGCTLNNGDSEIMKNSLAAYGHELVNNAEEADLAILNTCTVKNKTEDTMLYRIESLMRNGKHVVVAGCMPQAQK 80 (420)
T ss_pred CEEEEecCCCCcHHHHHHHHHHHHHCCCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHhcCCCEEEECCcCccCh
Confidence 58999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred hh-hcc-CccEEEcCCChHHHHHHHHHHhcCCceeecccccCCCCCCccccccceeeeeeccCCCCCCCccccccccCCc
Q 019874 140 DL-KEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217 (334)
Q Consensus 140 ~~-~~~-~~d~vvG~~e~~~i~e~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~v~isrGC~~~CsfC~ip~~rG~ 217 (334)
++ ... +.+.++|+.++..++++++......... .. .....++.|..+..+..++|+|+||||++|+||++|+++|+
T Consensus 81 e~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~isrGC~~~CsfC~ip~~~G~ 158 (420)
T TIGR01578 81 ESVYDNGSVASVLGVQAIDRLVEVVEETLKKKVHG-RR-EAGTPLSLPKPRKNPLIEIIPINQGCLGNCSYCITKHARGK 158 (420)
T ss_pred HHHHhhCCccEEEcCCCHHHHHHHHHHHhcCCccc-cc-ccccccccccccCCCcEEEEEEccCCCCCCCCCccccCCCC
Confidence 74 333 4557889999999999987754322110 00 00011122333334578999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCCh---hhhHHH
Q 019874 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI---LEHLKE 294 (334)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i---~~~l~~ 294 (334)
+|+||+|+|++|++.+++.|+++|+|+|+|++.||.|.+.++.+||+.|.+ ++ +..|+|+++++|..+ ++++
T Consensus 159 ~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~-i~--~~~~ir~~~~~p~~~~~~~~~l-- 233 (420)
T TIGR01578 159 LASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLITE-IP--GEFRLRVGMMNPKNVLEILDEL-- 233 (420)
T ss_pred cccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHHh-CC--CCcEEEEcCCCCCcccccCHHH--
Confidence 999999999999999999999999999999999998866679999998865 66 567999999999754 4444
Q ss_pred HHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 295 l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
++.++ .+++|++||||+||||+++|+.|+|+++.+++
T Consensus 234 ~~~~~-~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~ 270 (420)
T TIGR01578 234 ANVYQ-HEKVYKFLHLPVQSGSDSVLKEMKREYTVSDF 270 (420)
T ss_pred HHHHh-cccccCceEeCCccCCHHHHHhcCCCCCHHHH
Confidence 44444 56789999999999999999999999998765
No 13
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=100.00 E-value=9.8e-58 Score=454.02 Aligned_cols=266 Identities=34% Similarity=0.583 Sum_probs=229.0
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCC---CEEEEccccC
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK---PLVVAGCVPQ 136 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~---~VVv~GC~a~ 136 (334)
+|||+||||++|++|||.|.+.|.+.||++++++++||+|+||||||+..++++++++++++++.++ +||||||||+
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~~~~~~vvvgGc~a~ 80 (429)
T TIGR00089 1 KVYIETYGCQMNEADSEIMAGLLKEAGYEVTDDPEEADVIIINTCAVREKAEQKVRSRLGELAKLKKKNAKIVVAGCLAQ 80 (429)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecceeechHHHHHHHHHHHHHHhCcCCCEEEEECcccc
Confidence 5899999999999999999999999999999999999999999999999999999999999988776 8999999999
Q ss_pred CChhh--hcc-CccEEEcCCChHHHHHHHHHHhcCCceeecccccCCCC-CCcccc-ccceeeeeeccCCCCCCCccccc
Q 019874 137 GSRDL--KEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR-RNKFVEILPINVGCLGACTYCKT 211 (334)
Q Consensus 137 ~~~~~--~~~-~~d~vvG~~e~~~i~e~l~~~~~g~~~~~~~~~~~~~~-~~p~~~-~~~~~~~v~isrGC~~~CsfC~i 211 (334)
.+|++ ... ++|.|+|+.++..|++++++.. +.....+... .+.+ .+|.++ ....+++++++||||++|+||.+
T Consensus 81 ~~~ee~~~~~~~vd~vvg~~~~~~~~~~l~~~~-~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~i~~srGC~~~CsfC~~ 158 (429)
T TIGR00089 81 REGEELLKRIPEVDIVLGPQNKERIPEAIESAE-QEKQVVFNIS-KDVYEELPRPRSFGKTRAFLKIQEGCDKFCTYCIV 158 (429)
T ss_pred cCHHHHHhhCCCCCEEECCCCHHHHHHHHHHHh-cCCceecccc-ccchhcccccccCCCeEEEEEHHhCcCCCCCcCce
Confidence 99975 244 6889999999999999998865 3322222111 1111 123332 23467899999999999999999
Q ss_pred cccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC--CCHHHHHHHHHHhCCCCCCceEEEeecCCCChh
Q 019874 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289 (334)
Q Consensus 212 p~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~ 289 (334)
|.++|++|+||+++|++|++.+++.|+++|+|+|+|++.||.|+. ..+.+||++|.+ ++ ++.|+|+++++|..++
T Consensus 159 ~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--g~~~i~~~~~~p~~i~ 235 (429)
T TIGR00089 159 PYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSK-ID--GIERIRFGSSHPDDVT 235 (429)
T ss_pred ecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhc-CC--CCCEEEECCCChhhcC
Confidence 999999999999999999999999999999999999999988753 579999999975 55 6789999999999898
Q ss_pred hhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 290 ~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+++ +..|++.+++|+++|+|+||+|+++|+.|+|+++.+++
T Consensus 236 ~el--l~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~ 276 (429)
T TIGR00089 236 DDL--IELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEY 276 (429)
T ss_pred HHH--HHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHH
Confidence 887 77787776789999999999999999999999998764
No 14
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.6e-57 Score=453.43 Aligned_cols=268 Identities=32% Similarity=0.546 Sum_probs=226.0
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHH---HHHhcC--CCCEEEEccc
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSA--KKPLVVAGCV 134 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i---~~~k~~--~~~VVv~GC~ 134 (334)
+|||+||||++|++|||.|++.|.+.||++++++++||+||||||||++.|++++++.| +++|+. +.+|||||||
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ivv~Gc~ 81 (437)
T PRK14331 2 KYYIKTFGCQMNFNDSEKIKGILQTLGYEPADDWEEADLILVNTCTIREKPDQKVLSHLGEYKKIKEKNPNALIGVCGCL 81 (437)
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCcceecHHHHHHHHHHHHHHHHHHhCCCCEEEEEcch
Confidence 79999999999999999999999999999999999999999999999999999999888 555654 4579999999
Q ss_pred cCCChh-h-hcc-CccEEEcCCChHHHHHHHHHHhcCCce-eeccc--ccCCCCC-CccccccceeeeeeccCCCCCCCc
Q 019874 135 PQGSRD-L-KEL-EGVSIVGVQQIDRVVEVVEETLKGHEV-RLLHR--KKLPALD-LPKVRRNKFVEILPINVGCLGACT 207 (334)
Q Consensus 135 a~~~~~-~-~~~-~~d~vvG~~e~~~i~e~l~~~~~g~~~-~~~~~--~~~~~~~-~p~~~~~~~~~~v~isrGC~~~Cs 207 (334)
|+.+|+ + ... .+|.|+|..++..++++++....+... ..... ...+.++ +|..+.....++++++||||++|+
T Consensus 82 a~~~~e~~~~~~p~vD~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ld~~p~~~~~~~~a~v~i~rGC~~~Cs 161 (437)
T PRK14331 82 AQRAGYEIVQKAPFIDIVFGTFNIHHLPELLEQAKAGNKAIEILEEIDEDENKLDEYPTVRDNKYCAYVTVMRGCDKKCT 161 (437)
T ss_pred hcCChHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeecccccccccccccccccCCCcEEEEEeccCcCCCCc
Confidence 999995 3 344 478899999989999999876544321 11110 0011111 233333346789999999999999
Q ss_pred cccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC-CCHHHHHHHHHHhCCCCCCceEEEeecCCC
Q 019874 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286 (334)
Q Consensus 208 fC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~-~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~ 286 (334)
||++|.++|++|+||+++|++|++.+++.|+++|+|+|+|++.||.|.. ..+.+||+++.+ ++ +..|+|+++.+|.
T Consensus 162 FC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~-~~--g~~~i~~~~~~p~ 238 (437)
T PRK14331 162 YCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAE-ID--GVERIRFTTGHPR 238 (437)
T ss_pred cCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhc-CC--CccEEEEeccCcc
Confidence 9999999999999999999999999999999999999999999998753 579999999976 55 6679999999999
Q ss_pred ChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 287 ~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
.+++++ +..|++.+++|+++|||+||||+++|+.|+|+||.+++
T Consensus 239 ~l~~el--l~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~ 282 (437)
T PRK14331 239 DLDEDI--IKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEY 282 (437)
T ss_pred cCCHHH--HHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHH
Confidence 999888 78888777789999999999999999999999998764
No 15
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.5e-57 Score=451.10 Aligned_cols=251 Identities=27% Similarity=0.448 Sum_probs=216.1
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHH---HHHhcC--CCCEEEEc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSA--KKPLVVAG 132 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i---~~~k~~--~~~VVv~G 132 (334)
|++|||+||||++|++|||.|++.|.+.||++++++++||+||||||+|++.|++++++.+ +++++. +++|||||
T Consensus 1 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~viiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~~ivv~G 80 (418)
T PRK14336 1 MPGYYLWTIGCQMNQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVINRLHLLRKLKNKNPKLKIALTG 80 (418)
T ss_pred CCeEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecccEecHHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 4589999999999999999999999999999999999999999999999999999999555 444544 45799999
Q ss_pred cccCCChhh-h-cc-CccEEEcCCChHHHHHHHHHHhcCCceeecccccCCCCCCccccccceeeeeeccCCCCCCCccc
Q 019874 133 CVPQGSRDL-K-EL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209 (334)
Q Consensus 133 C~a~~~~~~-~-~~-~~d~vvG~~e~~~i~e~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~v~isrGC~~~CsfC 209 (334)
|+||.+++. . .+ .+|.|+|+.++..+.+.+... ..|. ..+..++|+|+||||++|+||
T Consensus 81 C~~~~~~~~l~~~~p~vd~v~g~~~~~~~~~~~~~~-----------------~~~~--~~~~~a~i~i~rGC~~~CsFC 141 (418)
T PRK14336 81 CLVGQDISLIRKKFPFVDYIFGPGSMPDWREIPEGF-----------------ILPL--KPPVSANVTIMQGCDNFCTYC 141 (418)
T ss_pred ChhcCCHHHHHhhCCCCcEEECCCCHHHHHHHHhhh-----------------ccCC--CCCeEEEEEeccCCCCCCccC
Confidence 999999874 3 45 468899999876665555311 0111 134578999999999999999
Q ss_pred cccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC--CCHHHHHHHHHHhCCCCCCceEEEeecCCCC
Q 019874 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287 (334)
Q Consensus 210 ~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~ 287 (334)
++|+++|++||||+++|++|++.+++.|+++|+|+|+|++.||.|.+ ..|.+||++|.+ ++ +..|+|+++.+|..
T Consensus 142 ~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~ 218 (418)
T PRK14336 142 VVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHD-IP--GLLRIRFLTSHPKD 218 (418)
T ss_pred CccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHh-cC--CccEEEEeccChhh
Confidence 99999999999999999999999999999999999999999998753 469999999975 66 67899999999999
Q ss_pred hhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 288 i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+++++ |+.|++.+++|+++|||+||||+++|+.|+|+|+.+++
T Consensus 219 i~~el--l~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~ 261 (418)
T PRK14336 219 ISQKL--IDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQY 261 (418)
T ss_pred cCHHH--HHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHH
Confidence 98877 77787777899999999999999999999999998764
No 16
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.7e-57 Score=452.07 Aligned_cols=269 Identities=28% Similarity=0.473 Sum_probs=223.6
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHH---HHHHhcCC--CCEEEEcc
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL---IAKCKSAK--KPLVVAGC 133 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~---i~~~k~~~--~~VVv~GC 133 (334)
++|||+||||++||+|||.|++.|.+.||+++++.++||+||||||||+++|++++++. ++++++.+ .+||||||
T Consensus 2 ~~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~~~vvv~GC 81 (439)
T PRK14328 2 KKYFIETYGCQMNEEDSEKLAGMLKSMGYERTENREEADIIIFNTCCVRENAENKVFGNLGELKKLKEKNPNLIIGVCGC 81 (439)
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHHHCcCEECCCcCcCCEEEEecccEechHHHHHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 57999999999999999999999999999999999999999999999999999999844 45555543 46999999
Q ss_pred ccCC--Chhh-h-cc-CccEEEcCCChHHHHHHHHHHhcCC-ceeecccccCCCC-CCccccccceeeeeeccCCCCCCC
Q 019874 134 VPQG--SRDL-K-EL-EGVSIVGVQQIDRVVEVVEETLKGH-EVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGAC 206 (334)
Q Consensus 134 ~a~~--~~~~-~-~~-~~d~vvG~~e~~~i~e~l~~~~~g~-~~~~~~~~~~~~~-~~p~~~~~~~~~~v~isrGC~~~C 206 (334)
|||. .++. . .+ .+|.|+|+.++..+++++.....+. ..........+.+ .+|..+.....++|+|+||||++|
T Consensus 82 ~a~~~~~~~~~~~~~~~vd~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~rGC~~~C 161 (439)
T PRK14328 82 MMQQKGMAEKIKKKFPFVDIIFGTHNIHKFPEYLNRVKEEGKSVIEIWEKEDGIVEGLPIDRKSKVKAFVTIMYGCNNFC 161 (439)
T ss_pred hhcccccHHHHHhhCCCceEEECCCCHHHHHHHHHHHhcCCCceeeecccccccccccccccCCCcEEEEEHHhCcCCCC
Confidence 9999 6663 3 34 4789999999999999998776432 1111110011111 123222234678999999999999
Q ss_pred ccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC--CCHHHHHHHHHHhCCCCCCceEEEeecC
Q 019874 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTN 284 (334)
Q Consensus 207 sfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~ir~~~~~ 284 (334)
+||++|+++|++|+||+++|++|++.+++.|+++|+|+|+|++.||.|.. ..|.+||+.+.+ ++ +..|+|+++.+
T Consensus 162 sfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~ 238 (439)
T PRK14328 162 TYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNE-ID--GLERIRFMTSH 238 (439)
T ss_pred CCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHh-cC--CCcEEEEecCC
Confidence 99999999999999999999999999999999999999999999997753 469999999875 55 67899998899
Q ss_pred CCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 285 p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
|..+++++ +..|++.+++|+++|||+||||+++|+.|||+|+.+++
T Consensus 239 P~~i~~el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~ 284 (439)
T PRK14328 239 PKDLSDDL--IEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYY 284 (439)
T ss_pred hhhcCHHH--HHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHH
Confidence 99999887 77887776789999999999999999999999998764
No 17
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=100.00 E-value=3.4e-57 Score=451.14 Aligned_cols=268 Identities=26% Similarity=0.446 Sum_probs=225.0
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhC-CCeeeCCCCCCcEEEEeecccccchHHHHHHHH---HHHhcC--CCCEEEEcc
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSA--KKPLVVAGC 133 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~-G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i---~~~k~~--~~~VVv~GC 133 (334)
+|||+||||++|++|||.|++.|.+. ||+++++.++||+|||||||||+.|++++++.| +++++. +.+||||||
T Consensus 1 ~~~i~t~GC~~N~~dse~~~~~l~~~~G~~~~~~~~~aDv~iiNTC~v~~~a~~k~~~~i~~~~~~k~~~~~~~ivv~GC 80 (438)
T TIGR01574 1 KLFIQTYGCQMNVRDSEHMAALLTAKEGYALTEDAKEADVLLINTCSVREKAEHKVFGELGGFKKLKKKNPDLIIGVCGC 80 (438)
T ss_pred CeEEEeCCCCCcHHHHHHHHHHHHhcCCcEECCCcccCCEEEEeccCeechHHHHHHHHHHHHHHHHhhCCCcEEEEeCc
Confidence 58999999999999999999999999 999999999999999999999999999999998 555554 356999999
Q ss_pred ccCCChhh-h-cc-CccEEEcCCChHHHHHHHHHHhcCCc-eeecccccCCCC-CCccccc-cceeeeeeccCCCCCCCc
Q 019874 134 VPQGSRDL-K-EL-EGVSIVGVQQIDRVVEVVEETLKGHE-VRLLHRKKLPAL-DLPKVRR-NKFVEILPINVGCLGACT 207 (334)
Q Consensus 134 ~a~~~~~~-~-~~-~~d~vvG~~e~~~i~e~l~~~~~g~~-~~~~~~~~~~~~-~~p~~~~-~~~~~~v~isrGC~~~Cs 207 (334)
|||.+|+. . .. .+|.|+|+.++..++++++....+.. .........+.. .+|.... ....++|+++||||++|+
T Consensus 81 ~a~~~~~~~~~~~~~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~rGC~~~Cs 160 (438)
T TIGR01574 81 MASHLGNEIFQRAPYVDFVFGTRNIHRLPQAIKTPLTQKFMVVDIDSDESEVAGYFADFRNEGIYKSFINIMIGCNKFCT 160 (438)
T ss_pred cccccHHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeeccccccccccccccccCCceeEEeehhcCCCCCCC
Confidence 99999974 3 33 47899999999999999987654432 111111111111 1233222 346789999999999999
Q ss_pred cccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCC-CCCCC---CCHHHHHHHHHHhCCCCCCceEEEeec
Q 019874 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIG---VNLPILLNAIVAELPPDGSTMLRIGMT 283 (334)
Q Consensus 208 fC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~y-g~d~~---~~l~~Ll~~l~~~i~~~~~~~ir~~~~ 283 (334)
||++|+++|++|+||+++|++|++.+++.|+++|+|+|+|++.| |.|.. ..|.+||++|.+ .+ +..|+|++++
T Consensus 161 fC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~ 237 (438)
T TIGR01574 161 YCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELST-ID--GIERIRFTSS 237 (438)
T ss_pred CCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHh-cC--CceEEEEecC
Confidence 99999999999999999999999999999999999999999999 87652 369999999975 45 7789999999
Q ss_pred CCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 284 ~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+|..+++++ +..|++.+++|+++|||+||||+++|+.|+|+|+.+++
T Consensus 238 ~p~~l~~el--l~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~ 284 (438)
T TIGR01574 238 HPLDFDDDL--IEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWY 284 (438)
T ss_pred CcccCCHHH--HHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHH
Confidence 999999887 77787766679999999999999999999999998765
No 18
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=100.00 E-value=3.8e-57 Score=449.93 Aligned_cols=266 Identities=26% Similarity=0.473 Sum_probs=222.3
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccCCCh
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSR 139 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~~~~ 139 (334)
+|||+||||+|||+|||.|++.|.+.||++++++++||+|+|||||||..|+++++++++++++++++||||||||+..|
T Consensus 1 ~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~viinTC~v~~~a~~~~~~~i~~~~~~~~~vvvgGc~a~~~p 80 (430)
T TIGR01125 1 KIGFISLGCPKNLVDSEVMLGILREAGYEVTPNYEDADYVIVNTCGFIEDARQESIDTIGELADAGKKVIVTGCLVQRYK 80 (430)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCCCccchHHHHHHHHHHHHHhcCCCEEEECCccccch
Confidence 58999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhh--cc-CccEEEcCCChHHHHHHHHHHhcCCceeecccccCCCCCCcccc-ccceeeeeeccCCCCCCCccccccccC
Q 019874 140 DLK--EL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHAR 215 (334)
Q Consensus 140 ~~~--~~-~~d~vvG~~e~~~i~e~l~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~isrGC~~~CsfC~ip~~r 215 (334)
++. .. ++|.|+|+..+..+.+.+............ ...+....|+.. ....+++|+++||||++|+||.+|.++
T Consensus 81 ee~~~~~~~vd~v~g~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~srGC~~~CsfC~~~~~~ 158 (430)
T TIGR01125 81 EELKEEIPEVHAITGSGDVENILNAIESREPGDKIPFK--SEIEMGEVPRILLTPRHYAYLKVAEGCNRRCAFCIIPSIR 158 (430)
T ss_pred HHHHhhCCCCcEEECCCCHHHHHHHHHHHhccCCcccc--cccccccccccccCCCeEEEEEEccCCCCCCCcCCeeccc
Confidence 853 34 478899998766666666543221110000 000000112211 123568899999999999999999999
Q ss_pred CccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCC--CCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHH
Q 019874 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293 (334)
Q Consensus 216 G~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~--~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~ 293 (334)
|++|+||+++|++|++.+++.|+++|+|+|+|++.||.|. ..++.+|++.|.+ ++ ++.|+|+++++|..+++++
T Consensus 159 G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~-~~--~i~~~r~~~~~p~~~~~el- 234 (430)
T TIGR01125 159 GKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGK-VG--GIYWIRMHYLYPDELTDDV- 234 (430)
T ss_pred CCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHh-cC--CccEEEEccCCcccCCHHH-
Confidence 9999999999999999999999999999999999998764 3579999999976 43 4789999999999999888
Q ss_pred HHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 294 ~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+..|++++.+|+++|||+||+|+++|+.|||+++.+++
T Consensus 235 -l~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~ 272 (430)
T TIGR01125 235 -IDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQ 272 (430)
T ss_pred -HHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHH
Confidence 77787766689999999999999999999999998764
No 19
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=6.4e-57 Score=449.97 Aligned_cols=271 Identities=29% Similarity=0.455 Sum_probs=224.9
Q ss_pred CCceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHH---hcC--CCCEEEE
Q 019874 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC---KSA--KKPLVVA 131 (334)
Q Consensus 57 ~~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~---k~~--~~~VVv~ 131 (334)
+|+||+|+||||++|++|||.|++.|.+.||+++++.++||+|+||||||++.|++++++.++++ |+. +.+||||
T Consensus 2 ~~~~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvvg 81 (444)
T PRK14325 2 MMKKLYIKTYGCQMNEYDSSKMADLLGAEGYELTDDPEEADLILLNTCSIREKAQEKVFSELGRWRKLKEKNPDLIIGVG 81 (444)
T ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcCCCCEEEEEcceeeehHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 35789999999999999999999999999999999999999999999999999999998886544 543 5789999
Q ss_pred ccccCCChhh-h-cc-CccEEEcCCChHHHHHHHHHHh-cCCceeecccccCCCCC-CccccccceeeeeeccCCCCCCC
Q 019874 132 GCVPQGSRDL-K-EL-EGVSIVGVQQIDRVVEVVEETL-KGHEVRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGAC 206 (334)
Q Consensus 132 GC~a~~~~~~-~-~~-~~d~vvG~~e~~~i~e~l~~~~-~g~~~~~~~~~~~~~~~-~p~~~~~~~~~~v~isrGC~~~C 206 (334)
||||+..|+. . .. .+|.|+|..++..|++++++.. .|...........+.++ +|.++.....++++|+||||++|
T Consensus 82 Gc~as~~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~d~~p~~~~~~~~~~i~isrGCp~~C 161 (444)
T PRK14325 82 GCVAQQEGEEILKRAPYVDIVFGPQTLHRLPEMIARARRGGKPVVDISFPEIEKFDHLPEPRAEGPSAFVSIMEGCDKYC 161 (444)
T ss_pred CchhccCHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhcCCceeeecccccccccccccccCCCceEEEEhhhCCCCCC
Confidence 9999999985 2 24 5788999988899999998764 44322111111111121 23222234678999999999999
Q ss_pred ccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCC-CC---CCCHHHHHHHHHHhCCCCCCceEEEee
Q 019874 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DI---GVNLPILLNAIVAELPPDGSTMLRIGM 282 (334)
Q Consensus 207 sfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~-d~---~~~l~~Ll~~l~~~i~~~~~~~ir~~~ 282 (334)
+||++|.++|+.++||+++|++|++.+++.|+++|+|+|+|++.|+. +. ...|.+||++|.+ ++ +..|+|+++
T Consensus 162 sFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~ 238 (444)
T PRK14325 162 TFCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAA-ID--GIERIRYTT 238 (444)
T ss_pred CccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHh-cC--CccEEEEcc
Confidence 99999999999999999999999999999999999999999999943 22 2368999999975 55 677899988
Q ss_pred cCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 283 ~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
.+|..+++++ +..|++.+++|+++|||+||||+++|+.|+|+|+.+++
T Consensus 239 ~~p~~~~~el--l~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~ 286 (444)
T PRK14325 239 SHPRDFTDDL--IEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEY 286 (444)
T ss_pred CCcccCCHHH--HHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHH
Confidence 8999999888 78787777789999999999999999999999998765
No 20
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.2e-56 Score=449.45 Aligned_cols=270 Identities=27% Similarity=0.466 Sum_probs=227.2
Q ss_pred CCCCCCCCCceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHH---HHHhcCC-
Q 019874 50 SLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI---AKCKSAK- 125 (334)
Q Consensus 50 ~~~~~~~~~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i---~~~k~~~- 125 (334)
+..+..|++++|||+||||+||++|||.|++.|.+.||++++++++||+|||||||||+.|++++++.| +++++.+
T Consensus 12 ~~~~~~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~~iiNTC~v~~~a~~~~~~~i~~~~~~k~~~p 91 (459)
T PRK14338 12 PDRDATPRERRYYVWTVGCQMNVSDSERLEAALQGVGYSPAERPEDADFIVLNSCSVRASAEERILGKLGELQRLKRQRP 91 (459)
T ss_pred cccccCCCCCEEEEEecCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceeeHHHHHHHHHHHHHHHHHhhCC
Confidence 445667778899999999999999999999999999999999999999999999999999999999874 4555543
Q ss_pred -CCEEEEccccCCChhh---hcc-CccEEEcCCChHHHHHHHHHHhcCCceeecccccCCCCCCccccccceeeeeeccC
Q 019874 126 -KPLVVAGCVPQGSRDL---KEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINV 200 (334)
Q Consensus 126 -~~VVv~GC~a~~~~~~---~~~-~~d~vvG~~e~~~i~e~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~v~isr 200 (334)
++||||||+||..++. ..+ .+|.|+|+.++..+++++..... . . . .+.+.....+.....++++|+|
T Consensus 92 ~~~ivv~GC~a~~~~~~~~~~~~p~vd~v~g~~~~~~i~~~~~~~~~----~-~--~-~~~~~~~~~~~~~~~~~i~I~r 163 (459)
T PRK14338 92 DTRIVLWGCMVGPNNQSIFAERLPMVDHFVSPSAVDEVVALAPNPIY----Q-L--D-EPALPVADWSHPPVTVHVPIIY 163 (459)
T ss_pred CCEEEEeCCccccChhHhhHhcCCCCcEEECCccHHHHHHHHHhhcc----c-c--c-cccccccccCCCceEEEEEccc
Confidence 5799999999999974 345 47899999999999998853210 0 0 0 1211111111235678999999
Q ss_pred CCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC--CCHHHHHHHHHHhCCCCCCceE
Q 019874 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTML 278 (334)
Q Consensus 201 GC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~i 278 (334)
|||++|+||.+|..+|+.|++|+++|++|++.+++.|+++|+|+|++++.||.|.. ..|.+||+.+.+ ++ ++.|+
T Consensus 164 GC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~-~~--gi~~i 240 (459)
T PRK14338 164 GCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHE-IP--GLERL 240 (459)
T ss_pred CCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHh-cC--CcceE
Confidence 99999999999999999999999999999999999999999999999999998752 469999999976 45 66789
Q ss_pred EEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 279 r~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
|+.+++|..+++++ +..|++.+++|+++|||+||||+++|+.|+|+++.+++
T Consensus 241 r~~~~~p~~i~~el--l~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~ 292 (459)
T PRK14338 241 RFLTSHPAWMTDRL--IHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARY 292 (459)
T ss_pred EEEecChhhcCHHH--HHHHhcccccccceecCcccCCHHHHHhccCCCCHHHH
Confidence 99889999999887 77777766799999999999999999999999998765
No 21
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=100.00 E-value=2.9e-56 Score=441.55 Aligned_cols=264 Identities=28% Similarity=0.506 Sum_probs=222.4
Q ss_pred EEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCC--CCEEEEccccCCChh
Q 019874 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVPQGSRD 140 (334)
Q Consensus 63 i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~--~~VVv~GC~a~~~~~ 140 (334)
|+||||++|++|||.|++.|.+.||+.++++++||+|+||||||+..++++++++++++++.+ ++||||||||+.+|+
T Consensus 1 ~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~~~~e 80 (414)
T TIGR01579 1 IETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQSNPK 80 (414)
T ss_pred CEeeCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCccccCHH
Confidence 589999999999999999999999999999999999999999999999999999999998876 679999999999997
Q ss_pred h-hcc-CccEEEcCCChHHHHHHHHHHhcCCceee-----cccccCCCCCCccccccceeeeeeccCCCCCCCccccccc
Q 019874 141 L-KEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRL-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213 (334)
Q Consensus 141 ~-~~~-~~d~vvG~~e~~~i~e~l~~~~~g~~~~~-----~~~~~~~~~~~p~~~~~~~~~~v~isrGC~~~CsfC~ip~ 213 (334)
. ... .+|+|+|..+...|+++++....+..... ......|.+.... ......++|+++||||++|+||.+|.
T Consensus 81 e~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~i~isrGCp~~CsfC~~~~ 159 (414)
T TIGR01579 81 ELADLKDVDLVLGNKEKDKINKLLSLGLKTSFYRVKNKNFSREKGVPEYEEVA-FEGHTRAFIKVQDGCNFFCSYCIIPF 159 (414)
T ss_pred HHhcCCCCcEEECCCCHHHHHHHHHHHhcccCccccccccccccccccccccc-cCCCeEEEEEeccCcCCCCCCCceee
Confidence 5 344 46889998888999999986543321110 0111112111110 11245678999999999999999999
Q ss_pred cCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCC--CCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhh
Q 019874 214 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291 (334)
Q Consensus 214 ~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~--~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~ 291 (334)
++|++|+||+++|++|++.+++.|+++|+|+|+|++.||.|. ...+.+|+++|.+ ++ +..|+|+++++|..++++
T Consensus 160 ~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~~~~e 236 (414)
T TIGR01579 160 ARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQ-IP--GIKRIRLSSIDPEDIDEE 236 (414)
T ss_pred ecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhc-CC--CCcEEEEeCCChhhCCHH
Confidence 999999999999999999999999999999999999999774 3579999999975 55 678999999999999988
Q ss_pred HHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 292 l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+ |..|++.+++|++||||+||||+++|+.|||+++.+++
T Consensus 237 l--l~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~ 275 (414)
T TIGR01579 237 L--LEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDF 275 (414)
T ss_pred H--HHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHH
Confidence 7 77777666679999999999999999999999998765
No 22
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=100.00 E-value=3.8e-56 Score=443.65 Aligned_cols=261 Identities=25% Similarity=0.422 Sum_probs=217.3
Q ss_pred CCceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccC
Q 019874 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (334)
Q Consensus 57 ~~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~ 136 (334)
..++|||+||||+||++|||.|++.|.+.||+.++++++||+||||||+|++.|++++++.|+++++++.+|||+||+|+
T Consensus 6 ~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~aD~ivinTC~v~~~a~~k~~~~i~~~~~~~~~ivv~GC~a~ 85 (440)
T PRK14862 6 AAPKIGFVSLGCPKALVDSERILTQLRAEGYEISPSYDGADLVIVNTCGFIDSAVQESLEAIGEALAENGKVIVTGCLGA 85 (440)
T ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecccccchHHHHHHHHHHHHHhcCCCEEEECCccc
Confidence 34589999999999999999999999999999999999999999999999999999999999999776667999999999
Q ss_pred CChh-hhc-c-CccEEEcCCChHHHHHHHHHHhcCCceeecccccCCCCCCccc--cccceeeeeeccCCCCCCCccccc
Q 019874 137 GSRD-LKE-L-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKT 211 (334)
Q Consensus 137 ~~~~-~~~-~-~~d~vvG~~e~~~i~e~l~~~~~g~~~~~~~~~~~~~~~~p~~--~~~~~~~~v~isrGC~~~CsfC~i 211 (334)
. ++ +.. . .+|.|+|+.++..+++++............ ..+ .+.. .....+++|+++||||++|+||++
T Consensus 86 ~-~~~~~~~~~~v~~v~g~~~~~~i~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~a~v~isrGCp~~CsFC~i 158 (440)
T PRK14862 86 K-EDQIREVHPKVLAVTGPHAYEQVMEAVHEHVPKPHDPFV---DLV---PPQGVKLTPRHYAYLKISEGCNHRCTFCII 158 (440)
T ss_pred C-HHHHHhhCCCceEEECCCCHHHHHHHHHHhhcccccccc---ccC---cchhcccCCCcEEEEEeccCCCCCCccCCc
Confidence 5 55 333 3 467899999999999988765321111000 000 0110 123467899999999999999999
Q ss_pred cccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC------------CCHHHHHHHHHHhCCCCCCceEE
Q 019874 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG------------VNLPILLNAIVAELPPDGSTMLR 279 (334)
Q Consensus 212 p~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~------------~~l~~Ll~~l~~~i~~~~~~~ir 279 (334)
|.++|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.|.. .++.+|+++|.+ + +. |+|
T Consensus 159 p~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~~~Ll~~l~~-~---~~-~~r 233 (440)
T PRK14862 159 PSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRMTDLCEALGE-L---GA-WVR 233 (440)
T ss_pred ccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHHHHHHHHHHh-c---CC-EEE
Confidence 999999999999999999999999999999999999999987631 468899999976 3 44 999
Q ss_pred EeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 280 ~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+++++|..+++++ |..|++ +..|+++|||+||||+++|+.|||+++.+++
T Consensus 234 ~~~~~p~~~~del--l~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~ 283 (440)
T PRK14862 234 LHYVYPYPHVDEV--IPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKT 283 (440)
T ss_pred EecCCCCcCCHHH--HHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHH
Confidence 9989998777766 666765 5567799999999999999999999997654
No 23
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=6.8e-55 Score=434.82 Aligned_cols=264 Identities=25% Similarity=0.411 Sum_probs=220.1
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCC----CCEEEEcccc
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK----KPLVVAGCVP 135 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~----~~VVv~GC~a 135 (334)
+|||+||||++|++|||.|++.|.+.||+.++++++||+|||||||||+.|++++++.|+++++.+ .+|+|+||+|
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADi~iiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~v~v~GC~a 81 (440)
T PRK14334 2 KAHIITYGCQMNEYDTHLVESELVSLGAEIVDSVDEADFVLVNTCAVRGKPVEKVRSLLGELRKEKAQRPLVVGMMGCLA 81 (440)
T ss_pred eEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceeehHHHHHHHHHHHHHhhCcCCCcEEEEEcchh
Confidence 799999999999999999999999999999999999999999999999999999999999886533 3488999999
Q ss_pred CCCh-h-hhcc-CccEEEcCCChHHHHHHHHHHhcCCceeecccccCCCCCCccccccceeeeeeccCCCCCCCcccccc
Q 019874 136 QGSR-D-LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTK 212 (334)
Q Consensus 136 ~~~~-~-~~~~-~~d~vvG~~e~~~i~e~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~v~isrGC~~~CsfC~ip 212 (334)
|.++ + +... .+|.|+|++++..+++++.... ............ ..+|.....+..++|+|++|||++|+||.+|
T Consensus 82 ~~~~~~~l~~~~~vd~v~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~l~isrGC~~~CsfC~~p 158 (440)
T PRK14334 82 QLEEGQQMARKFGVDVLLGPGALTDIGKALEANE--RFWGLQFKDELH-DHIPPPPQGKLSAHLTIMRGCNHHCTYCIVP 158 (440)
T ss_pred ccCChhHHhcCCCCCEEECCCCHHHHHHHHHhhc--cccccccccccc-cccccccCCCeEEEEEeccCCCCCCcCCCcc
Confidence 9985 3 3333 5788999999999998886421 100000000010 0122222345789999999999999999999
Q ss_pred ccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC--CCHHHHHHHHHHhCCCCCCceEEEeecCCCChhh
Q 019874 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290 (334)
Q Consensus 213 ~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~--~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~ 290 (334)
..+|+.++||+++|++|++.+.+.|+++|+|+|+|++.||.|.. .++.+|++.+.+ + ++.|+|+++.+|..+++
T Consensus 159 ~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~-~---~i~~ir~~~~~p~~i~~ 234 (440)
T PRK14334 159 TTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGA-S---GIPRVKFTTSHPMNFTD 234 (440)
T ss_pred hhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHh-c---CCcEEEEccCCcccCCH
Confidence 99999999999999999999999999999999999999987753 468999999864 4 56789998889999998
Q ss_pred hHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 291 ~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
++ +..|++.+++|+++|||+||||+++|+.|+|+|+.+++
T Consensus 235 el--l~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~ 274 (440)
T PRK14334 235 DV--IAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKY 274 (440)
T ss_pred HH--HHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHH
Confidence 87 78888777789999999999999999999999998764
No 24
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=9.1e-54 Score=424.26 Aligned_cols=255 Identities=24% Similarity=0.451 Sum_probs=213.8
Q ss_pred CChhHHHHHHHHHH-hCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhc---CCCCEEEEccccCCChhh--hc
Q 019874 70 HNQSDSEYMAGQLS-AFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKS---AKKPLVVAGCVPQGSRDL--KE 143 (334)
Q Consensus 70 ~N~~Dse~m~~~L~-~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~---~~~~VVv~GC~a~~~~~~--~~ 143 (334)
||++|||.|++.|. ..||++++++++||+||||||||++.|++++++.|+++++ .+++|||+||+||.+++. ..
T Consensus 1 ~N~~dse~~~~~l~~~~G~~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~ivv~GC~a~~~~~~~~~~ 80 (420)
T PRK14339 1 MNVRDSEHMIAELSQKEDYKLTQDIKEADLILINTCSVREKPVHKLFSEIGQFNKIKKEGAKIGVCGCTASHLGEEIIKR 80 (420)
T ss_pred CCHHHHHHHHHHHhhcCCcEECCCcccCCEEEEeccCccchHHHHHHHHHHHHHHhhCCCCeEEEECCccccCCHHHHhh
Confidence 79999999999999 5899999999999999999999999999999999998864 346799999999998863 34
Q ss_pred c-CccEEEcCCChHHHHHHHHHHhcCCceeecccccCCCCCCccccccceeeeeeccCCCCCCCccccccccCCccccCC
Q 019874 144 L-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222 (334)
Q Consensus 144 ~-~~d~vvG~~e~~~i~e~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~ 222 (334)
+ .+|+|+|+.++..+++++..... ..... ... ...+..+..+.....++|+|+||||++|+||++|+++|+.++||
T Consensus 81 ~~~vd~v~g~~~~~~i~~~~~~~~~-~~~~~-~~~-~~~~~~~~~~~~~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~ 157 (420)
T PRK14339 81 APYVDFVLGARNVSKISQVIHTPKA-VEVDI-DYD-ESTYAFADFRKSPYKSLVNISIGCDKKCTYCIVPHTRGKEISIP 157 (420)
T ss_pred CCCCcEEECCCCHHHHHHHHHhhcc-cceec-ccc-ccccccccccCCCeEEEEEecCCCCCCCCcCCcccccCCCCCCC
Confidence 5 47899999999999999875311 11110 000 00111111123456799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC-----CCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHH
Q 019874 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (334)
Q Consensus 223 ~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~-----~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (334)
+++|++|++.+++.|+++|+|+|+|++.||.|.. ..|.+||+.|.+ ++ ++.|+|+++++|..+++++ |..
T Consensus 158 ~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~-~~--g~~~ir~~s~~p~~~~~el--l~~ 232 (420)
T PRK14339 158 MDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSE-IE--GLERIRFTSPHPLHMDDKF--LEE 232 (420)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhc-CC--CccEEEECCCChhhcCHHH--HHH
Confidence 9999999999999999999999999999998741 358999999875 55 7789999999999999888 888
Q ss_pred HHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 298 VLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 298 l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
|++++.+|++||||+|||||++|+.|||+|+.+++
T Consensus 233 ~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~ 267 (420)
T PRK14339 233 FAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWF 267 (420)
T ss_pred HHcCCCccCceEeCCccCCHHHHHhccCCCCHHHH
Confidence 88777799999999999999999999999998764
No 25
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-49 Score=376.75 Aligned_cols=271 Identities=22% Similarity=0.384 Sum_probs=227.7
Q ss_pred CCCceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcC----C----CC
Q 019874 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA----K----KP 127 (334)
Q Consensus 56 ~~~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~----~----~~ 127 (334)
...+|||++|||||||..|+|.....|+..||-.++++++||+|+++||++++.||+++++.+..++.. . .+
T Consensus 70 g~gRkv~~etYGCQMNvnD~Eiv~sIl~~~Gy~~~~~~e~Advill~TCsiRe~AEq~iwnrL~~~ra~k~~~~~~rpl~ 149 (552)
T KOG2492|consen 70 GNGRKVYLETYGCQMNVNDTEIVWSILKKSGYLRSDKPEEADVILLVTCSIREGAEQRIWNRLKLLRALKVNRPTSRPLR 149 (552)
T ss_pred cCCcEEEEEEeeeeeccchHHHHHHHHHhcCccccCCcccCcEEEEEEeeccccHHHHHHHHHHHHHHhhccCccCCCce
Confidence 446789999999999999999999999999999999999999999999999999999999988766532 1 25
Q ss_pred EEEEccccCCChhh-h--ccCccEEEcCCChHHHHHHHHHHhcCCcee---ecccccCCCCCCccc-cccceeeeeeccC
Q 019874 128 LVVAGCVPQGSRDL-K--ELEGVSIVGVQQIDRVVEVVEETLKGHEVR---LLHRKKLPALDLPKV-RRNKFVEILPINV 200 (334)
Q Consensus 128 VVv~GC~a~~~~~~-~--~~~~d~vvG~~e~~~i~e~l~~~~~g~~~~---~~~~~~~~~~~~p~~-~~~~~~~~v~isr 200 (334)
|.|-||||++..+. . +.-+|++-|+..|..+|.+|.-...|.... +.-.+.+.+. .|.. ......|+|.|.|
T Consensus 150 v~vLGCMAERlk~~iL~~~kmVdivaGPDaYrDLPrll~~~~~g~~~in~~Lsldetyadv-~pvr~~~~s~tAFvSiMR 228 (552)
T KOG2492|consen 150 VGVLGCMAERLKEKILEREKMVDIVAGPDAYRDLPRLLAVARGGQNGINVLLSLDETYADV-QPVRVSSSSTTAFVSIMR 228 (552)
T ss_pred EEeehhhHHHHHHHHhhhhhceeeeeCchhhhhhHHHHHHHhccCCceeEEEeccchhccc-ceeeccCccchhHHHHHh
Confidence 77889999998762 2 334789999999999999998766554321 1111222221 1322 2346789999999
Q ss_pred CCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCC-------------------------
Q 019874 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------------------------- 255 (334)
Q Consensus 201 GC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~------------------------- 255 (334)
||+|-|+||++|++||+.||||++.|++|++.|.++|+||+.|+|||+++|..+.
T Consensus 229 GCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GFst~yK~K~g 308 (552)
T KOG2492|consen 229 GCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPKQG 308 (552)
T ss_pred ccccccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCCCceeeecccCC
Confidence 9999999999999999999999999999999999999999999999999996532
Q ss_pred CCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 256 ~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+..|+.||+.+....| .-++||.+.||.++.+++ |..+...+..|+.+|+|.|||+.++|+.|+|||+.+.+
T Consensus 309 Gl~Fa~LLd~vs~~~P---emR~RFTSPHPKDfpdev--l~li~~rdnickqihlPAqSgds~vLE~mrRgysreay 380 (552)
T KOG2492|consen 309 GLRFAHLLDQVSRADP---EMRIRFTSPHPKDFPDEV--LELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAY 380 (552)
T ss_pred CccHHHHHHHHhhhCc---ceEEEecCCCCCCChHHH--HHHHHhCcchhheeeccccCCchHHHHHHHccCChHhh
Confidence 1369999999987665 578999999999999988 77788888999999999999999999999999998864
No 26
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=99.96 E-value=7.4e-29 Score=198.47 Aligned_cols=92 Identities=41% Similarity=0.659 Sum_probs=84.3
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCC---CCEEEEccccC
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVPQ 136 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~---~~VVv~GC~a~ 136 (334)
||||+||||+||++|||.|++.|.+.||++++++++||++|||||||+++|++++++.|+++++.+ ++|||+||+||
T Consensus 1 Kv~i~T~GC~~N~~Dse~i~~~l~~~G~~~~~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq 80 (98)
T PF00919_consen 1 KVYIETLGCQMNQYDSERIASILQAAGYEIVDDPEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQ 80 (98)
T ss_pred CEEEEECCCcccHHHHHHHHHHHHhcCCeeecccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccc
Confidence 699999999999999999999999999999999999999999999999999999999999987765 78999999999
Q ss_pred CChhh-h-ccC-ccEEEc
Q 019874 137 GSRDL-K-ELE-GVSIVG 151 (334)
Q Consensus 137 ~~~~~-~-~~~-~d~vvG 151 (334)
.+++. . ..+ +|+|+|
T Consensus 81 ~~~~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 81 RYGEELKKEFPEVDLVVG 98 (98)
T ss_pred cChHHHHhhCCCeEEEeC
Confidence 99973 3 334 688887
No 27
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.95 E-value=9.9e-27 Score=235.63 Aligned_cols=243 Identities=17% Similarity=0.173 Sum_probs=172.4
Q ss_pred HHHHHHHHHhCC-Cee--eCC---------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEEEEccc
Q 019874 75 SEYMAGQLSAFG-YAL--TDN---------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCV 134 (334)
Q Consensus 75 se~m~~~L~~~G-~~~--~~~---------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~--~~~VVv~GC~ 134 (334)
-.++++.|++.| +++ +|. ...+|+|.+++.| .....++++++.+|+. +.+||+||+|
T Consensus 25 l~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~pdvVgis~~t---~~~~~a~~~~~~~k~~~P~~~iV~GG~h 101 (497)
T TIGR02026 25 VAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHCPDLVLITAIT---PAIYIACETLKFARERLPNAIIVLGGIH 101 (497)
T ss_pred HHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcCcCEEEEecCc---ccHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 678889999999 443 221 1358999995433 2234566777777765 6789999999
Q ss_pred cCCChhh--hcc-Ccc-EEEcCCChHHHHHHHHHHhcCCce------e--ecc-------ccc---CCCCC-C-ccc---
Q 019874 135 PQGSRDL--KEL-EGV-SIVGVQQIDRVVEVVEETLKGHEV------R--LLH-------RKK---LPALD-L-PKV--- 187 (334)
Q Consensus 135 a~~~~~~--~~~-~~d-~vvG~~e~~~i~e~l~~~~~g~~~------~--~~~-------~~~---~~~~~-~-p~~--- 187 (334)
++..|+. ... .+| +|+|++| ..++++++....|... + .|. ..+ ..+++ + |..
T Consensus 102 ~t~~~~~~l~~~p~vD~Vv~GEGE-~~~~~Ll~~l~~g~~~~~~~~I~Gi~y~~~g~i~~~~~~~~i~dLd~~~P~~~l~ 180 (497)
T TIGR02026 102 PTFMFHQVLTEAPWIDFIVRGEGE-ETVVKLIAALENHNFAEDRNKVDGIAFLRDQEIVETLAAPMIQDLDVYRPDWELV 180 (497)
T ss_pred cCcCHHHHHhcCCCccEEEeCCcH-HHHHHHHHHHHcCCCCCchhhCCceEEEeCCEEEeCCCCCCccccccCCCCcccC
Confidence 9999874 233 478 6899999 6899999887666411 0 010 000 11111 1 111
Q ss_pred --cc------cceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHH-CCCcEEEEeeccCCCCCCCCCCC
Q 019874 188 --RR------NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVN 258 (334)
Q Consensus 188 --~~------~~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~-~G~kei~l~~~d~~~yg~d~~~~ 258 (334)
.. ....+.++++||||++|+||.++.+.+++|.|+++.|++||+.+.+ .|++.|+|+|++++.. ...
T Consensus 181 ~~~~y~~~~~~~~~~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~----~~~ 256 (497)
T TIGR02026 181 DWKKYIYYPLGVRVAVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTIN----RKK 256 (497)
T ss_pred chhhcccccCCCceeeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecccccC----HHH
Confidence 00 1123468899999999999999888788999999999999999975 6999999999887632 236
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeecCCCCh--hhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 259 l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i--~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+.+|+++|.+.-+ .+..|. .+++++.+ ++++ |..|++ +||.++.+|+||+|+++|+.|+|+++.+++
T Consensus 257 ~~~l~~~l~~~~~-l~i~w~--~~~r~~~i~~d~el--l~~l~~--aG~~~v~iGiES~~~~~L~~~~K~~t~~~~ 325 (497)
T TIGR02026 257 FQEFCEEIIARNP-ISVTWG--INTRVTDIVRDADI--LHLYRR--AGLVHISLGTEAAAQATLDHFRKGTTTSTN 325 (497)
T ss_pred HHHHHHHHHhcCC-CCeEEE--EecccccccCCHHH--HHHHHH--hCCcEEEEccccCCHHHHHHhcCCCCHHHH
Confidence 7899999976311 023332 35677666 5555 666665 589999999999999999999999998764
No 28
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.94 E-value=1.2e-25 Score=226.46 Aligned_cols=220 Identities=16% Similarity=0.149 Sum_probs=152.3
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEEEEccccCCChhh--hcc-Ccc-EEEcCCChHHHHHHHHHHhc
Q 019874 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQGSRDL--KEL-EGV-SIVGVQQIDRVVEVVEETLK 167 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~--~~~VVv~GC~a~~~~~~--~~~-~~d-~vvG~~e~~~i~e~l~~~~~ 167 (334)
.++|+|+|+|+|.... .+.++++.+|+. +.+||+||+|++..|+. ... .+| +|.|++| ..++++++....
T Consensus 67 ~~~Dlv~is~~t~~~~---~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE-~~l~~l~~g~~~ 142 (472)
T TIGR03471 67 KDYDLVVLHTSTPSFP---SDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFD-YTIKEVAEGKPL 142 (472)
T ss_pred cCCCEEEEECCCcchH---HHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchH-HHHHHHHcCCCh
Confidence 4689999998876543 466677777766 57899999999999974 233 478 6889998 467777642100
Q ss_pred CCcee-ecc--------ccc---CCCCC-Ccc----cc------------ccceeeeeeccCCCCCCCcccccccc-CC-
Q 019874 168 GHEVR-LLH--------RKK---LPALD-LPK----VR------------RNKFVEILPINVGCLGACTYCKTKHA-RG- 216 (334)
Q Consensus 168 g~~~~-~~~--------~~~---~~~~~-~p~----~~------------~~~~~~~v~isrGC~~~CsfC~ip~~-rG- 216 (334)
..... .|. ... ..+++ +|. ++ .....+.|+++||||++|+||.++.. .|
T Consensus 143 ~~i~Gi~~r~~~g~~~~~~~~~~~~dLd~lP~p~p~~~~~l~~~~y~~~~~~~~~~~i~tsRGCp~~C~FC~~~~~~~g~ 222 (472)
T TIGR03471 143 AEIDGLSYRGKDGKIVHNPDRPMIEDMDALPFVAPVYKRDLDIERYFIGYLKHPYISLYTGRGCPSKCTFCLWPQTVGGH 222 (472)
T ss_pred hcCCceEEEcCCCeEEeCCCCCCccchhhCCCCchhhhccCCHHHcccccccCceEEEEecCCCCCCCCCCCCCccCCCC
Confidence 00000 011 000 01111 111 00 01234578899999999999998854 34
Q ss_pred ccccCCHHHHHHHHHHHHHC--CCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHH
Q 019874 217 HLGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294 (334)
Q Consensus 217 ~~rsr~~e~Iv~Ei~~l~~~--G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~ 294 (334)
++|.||++.|++|++.+.+. |+++|+|.|++++. + ...+.+|++.|.+ + ++.|.. ..+. .+++++
T Consensus 223 ~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~---~-~~~~~~l~~~l~~-~---~i~~~~--~~~~-~~~~e~-- 289 (472)
T TIGR03471 223 RYRTRSAESVIEEVKYALENFPEVREFFFDDDTFTD---D-KPRAEEIARKLGP-L---GVTWSC--NARA-NVDYET-- 289 (472)
T ss_pred ceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCC---C-HHHHHHHHHHHhh-c---CceEEE--EecC-CCCHHH--
Confidence 48999999999999999875 88999998877642 2 2367888888865 3 555643 2333 366766
Q ss_pred HHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 295 l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
|..|++ +||.++++|+||+|+++|+.|+|+++.+++
T Consensus 290 l~~l~~--aG~~~v~iGiES~s~~~L~~~~K~~~~~~~ 325 (472)
T TIGR03471 290 LKVMKE--NGLRLLLVGYESGDQQILKNIKKGLTVEIA 325 (472)
T ss_pred HHHHHH--cCCCEEEEcCCCCCHHHHHHhcCCCCHHHH
Confidence 777775 589999999999999999999999998754
No 29
>PRK00955 hypothetical protein; Provisional
Probab=99.93 E-value=4e-25 Score=225.42 Aligned_cols=130 Identities=21% Similarity=0.317 Sum_probs=105.6
Q ss_pred eeeeeeccCCCCCCCccccccccCCcc-ccCCHHHHHHHHHHHHHC-CCcEEE--EeeccCCCCCCC-------------
Q 019874 192 FVEILPINVGCLGACTYCKTKHARGHL-GSYTVESLVGRVRTVIAD-GVKEVW--LSSEDTGAYGRD------------- 254 (334)
Q Consensus 192 ~~~~v~isrGC~~~CsfC~ip~~rG~~-rsr~~e~Iv~Ei~~l~~~-G~kei~--l~~~d~~~yg~d------------- 254 (334)
..++|+|+|||+++|+||++|+++|+. +|||+++|++|++.+.+. |++++. +.|++.++||.+
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~ 371 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNK 371 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccc
Confidence 457899999999999999999999995 999999999999999987 899975 668999999852
Q ss_pred ----------C---CCCHHHHHHHHHHhCCCCCCceEEEee-cCCCChh----hhHHHHHHHHhCCCCCCeEEEccCCcC
Q 019874 255 ----------I---GVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFIL----EHLKEIAEVLRHPCVYSFLHVPVQSGS 316 (334)
Q Consensus 255 ----------~---~~~l~~Ll~~l~~~i~~~~~~~ir~~~-~~p~~i~----~~l~~l~~l~~~~~g~~~l~igiQSgs 316 (334)
+ ...+.+||++|.+ ++ +++|+++++ ++.+.+. +++ +..|.++ .++.+||||+||+|
T Consensus 372 ~clfp~~c~nl~~d~~~l~~LLr~l~~-l~--gvkrv~isSGIR~D~l~~~~~~~~--l~eL~~~-~vsg~L~IapESgS 445 (620)
T PRK00955 372 QCLFPKPCKNLDVDHKEYLELLRKVRK-LP--GVKKVFIRSGIRYDYLLHDKNDEF--FEELCEH-HVSGQLKVAPEHIS 445 (620)
T ss_pred ccccCccccccCcChHHHHHHHHHHhc-cC--CceEEEeecceeccccccCCcHHH--HHHHHHH-hcCCCceeCcCCCC
Confidence 0 1358899999975 77 888988877 4654432 223 4555543 46779999999999
Q ss_pred HHHHHHhCCCC
Q 019874 317 DAVLSVSQKIV 327 (334)
Q Consensus 317 d~vLk~M~R~~ 327 (334)
+++|+.|+|+.
T Consensus 446 d~VLk~M~K~~ 456 (620)
T PRK00955 446 DRVLKLMGKPS 456 (620)
T ss_pred hHHHHHhCCCC
Confidence 99999999984
No 30
>PRK01254 hypothetical protein; Provisional
Probab=99.90 E-value=8.8e-24 Score=214.76 Aligned_cols=134 Identities=19% Similarity=0.282 Sum_probs=116.6
Q ss_pred eeeeeeccCCCCCCCccccccccCCc-cccCCHHHHHHHHHHHHHC--CCcEEE--EeeccCCCCCC---C---------
Q 019874 192 FVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIAD--GVKEVW--LSSEDTGAYGR---D--------- 254 (334)
Q Consensus 192 ~~~~v~isrGC~~~CsfC~ip~~rG~-~rsr~~e~Iv~Ei~~l~~~--G~kei~--l~~~d~~~yg~---d--------- 254 (334)
..++|+|+|||+++|+||+++.++|+ ++|||+++|++|++.+.+. |+++++ |+|+|+++||. |
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 44789999999999999999999999 7999999999999999964 999999 99999999996 2
Q ss_pred -----------C---CCCHHHHHHHHHHhCCCCCCceEEEeecCCCChh---hhHHHHHHHHhCCCCCCeEEEccCCcCH
Q 019874 255 -----------I---GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL---EHLKEIAEVLRHPCVYSFLHVPVQSGSD 317 (334)
Q Consensus 255 -----------~---~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~---~~l~~l~~l~~~~~g~~~l~igiQSgsd 317 (334)
+ ...+.+||++|.+ ++ |++++|++|.+|.++. +++ |+.|+++ .++.+||||+||+|+
T Consensus 452 ~~Cl~P~~C~nL~~dh~~l~eLLrkLr~-Ip--GVKkVrI~SgiR~Dl~l~d~el--Ieel~~~-hV~g~LkVppEH~Sd 525 (707)
T PRK01254 452 LSCVYPDICPHLDTDHEPTINLYRRARD-LK--GIKKILIASGVRYDLAVEDPRY--VKELVTH-HVGGYLKIAPEHTEE 525 (707)
T ss_pred ccccCcccccccCCCHHHHHHHHHHHHh-CC--CceEEEEEcCCCccccccCHHH--HHHHHHh-CCccccccccccCCH
Confidence 1 1358999999975 78 8999999999998774 555 6777764 789999999999999
Q ss_pred HHHHHhCCC--CCcCc
Q 019874 318 AVLSVSQKI--VPTKS 331 (334)
Q Consensus 318 ~vLk~M~R~--~t~e~ 331 (334)
+||+.|+|+ ++.++
T Consensus 526 ~VLk~M~Kp~~~~~e~ 541 (707)
T PRK01254 526 GPLSKMMKPGMGSYDR 541 (707)
T ss_pred HHHHHhCCCCcccHHH
Confidence 999999998 55444
No 31
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.81 E-value=5.4e-19 Score=176.70 Aligned_cols=229 Identities=19% Similarity=0.278 Sum_probs=148.0
Q ss_pred CCcEEEEeecccccchHHHHHHHHHHHhcC-C-CCEEEEccccCCChh-hhcc-Ccc-EEEcCCChHHHHHHHHHHhcCC
Q 019874 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSA-K-KPLVVAGCVPQGSRD-LKEL-EGV-SIVGVQQIDRVVEVVEETLKGH 169 (334)
Q Consensus 95 ~ADlviiNTCtv~~~a~~~~~~~i~~~k~~-~-~~VVv~GC~a~~~~~-~~~~-~~d-~vvG~~e~~~i~e~l~~~~~g~ 169 (334)
.++.+.+..+.- .........+...+.. . ..|++||.+++..+. +... ++| +++|++| ..++++++....+.
T Consensus 72 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~GG~~~t~~~~~~~~~~~~D~iv~GeGE-~~~~~~~~~~~~~~ 148 (490)
T COG1032 72 RADLIGVSDPLG--GLRPDALKLVAKARGRRDKPLVVVGGPEATENPEPLLDFGPADIIVIGEGE-ETLPELLEALEEGE 148 (490)
T ss_pred cceeEEEecccc--hhchhhhHHHHHHhcccCCCeEEecCCCcCCCcHHHHhhcCCCEEEEcCch-HHHHHHHHHHhccc
Confidence 455665544432 1122334444444433 2 458999999998876 3333 368 6899999 57999998765543
Q ss_pred ce--------e----e-c----ccccCCCCCC---------ccccc-cceeeeeeccCCCCCCCccccccccCCccccCC
Q 019874 170 EV--------R----L-L----HRKKLPALDL---------PKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222 (334)
Q Consensus 170 ~~--------~----~-~----~~~~~~~~~~---------p~~~~-~~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~ 222 (334)
.. + . + ...+.+.... |.... .....+|+++||||++|+||.++... +.|+++
T Consensus 149 ~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ve~~RGCp~~C~FC~~~~~~-~~r~~~ 227 (490)
T COG1032 149 DDPRVPGLALPSFEEIVYDQDLDDVPIPAYDLVDDHKRDDLPPYGAGENRAFSVETSRGCPRGCRFCSITKHF-KYRRRR 227 (490)
T ss_pred cccccCccccCChhhcccccccccCCccceeecccccccccCCcccccceEEEEEeccCCCCCCCCCCCcccc-cccCCC
Confidence 21 0 0 0 0011111111 11111 22357899999999999999998776 789999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCC---CCCHHHHHHHHHHhCCCCCCceEEEe--ecCCCChh-hhHHHHH
Q 019874 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIG--MTNPPFIL-EHLKEIA 296 (334)
Q Consensus 223 ~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~---~~~l~~Ll~~l~~~i~~~~~~~ir~~--~~~p~~i~-~~l~~l~ 296 (334)
++.+++|++.+++.|.+.+++..+|+..||.+. ...+..|...+.+... .+..++.++ .++++.++ +.+ .
T Consensus 228 ~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~r~d~~~~~~~---~ 303 (490)
T COG1032 228 PERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLELIERGL-RKGCRVHISAPSLRADTVTDEEL---L 303 (490)
T ss_pred HHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHHHHHHhc-ccCceeeeeccccCchhcCHHHH---H
Confidence 999999999999999999888888888888752 1233333334433211 022233333 34677776 433 3
Q ss_pred HHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 297 EVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 297 ~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
.+++ .+|+..+.+|+||||+++|+.|+|+++.+++
T Consensus 304 ~~~~-~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~ 338 (490)
T COG1032 304 KLLR-EAGLRRVYIGIESGSEELLKKINKGITTEEV 338 (490)
T ss_pred HHHh-hCCCcceEEeccCCCHHHHHHHhCCCChHHH
Confidence 3443 3579999999999999999999999998875
No 32
>PRK05481 lipoyl synthase; Provisional
Probab=99.75 E-value=4.6e-18 Score=161.26 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=101.2
Q ss_pred cceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC-CCHHHHHHHHHH
Q 019874 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268 (334)
Q Consensus 190 ~~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~-~~l~~Ll~~l~~ 268 (334)
....++|.+++||+++|+||++|..+| +++++++|+++++.+.+.|++||+|+|+|.+.++ +.+ ..+.+||+.|.+
T Consensus 51 ~~~~~fi~is~GC~~~C~FC~i~~~r~--~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~-~~~~~~l~~Ll~~I~~ 127 (289)
T PRK05481 51 RGTATFMILGDICTRRCPFCDVATGRP--LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLP-DGGAQHFAETIRAIRE 127 (289)
T ss_pred CCeEEEEEecccccCCCCCceeCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcc-cccHHHHHHHHHHHHh
Confidence 346789999999999999999999876 7899999999999999999999999999876442 112 368999999987
Q ss_pred hCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
.+| +. ++++.+.+|....+.+ ..+++ +|+..+....++ ++++|+.|+|++|.+++
T Consensus 128 ~~p--~i-rI~~l~~~~~~~~e~L---~~l~~--ag~~i~~~~~et-s~~vlk~m~r~~t~e~~ 182 (289)
T PRK05481 128 LNP--GT-TIEVLIPDFRGRMDAL---LTVLD--ARPDVFNHNLET-VPRLYKRVRPGADYERS 182 (289)
T ss_pred hCC--Cc-EEEEEccCCCCCHHHH---HHHHh--cCcceeeccccC-hHHHHHHhCCCCCHHHH
Confidence 555 43 5776555555444444 44554 355666666677 59999999999998764
No 33
>PRK12928 lipoyl synthase; Provisional
Probab=99.59 E-value=5.1e-15 Score=140.40 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=98.1
Q ss_pred cceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC-CCHHHHHHHHHH
Q 019874 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268 (334)
Q Consensus 190 ~~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~-~~l~~Ll~~l~~ 268 (334)
....++|.+++||+++|+||+++. |+.+++++++|+++++.+.+.|+++|+|+|.+...+. |.+ ..+.+|++.|.+
T Consensus 58 ~~~~tfv~is~gC~~~C~FCa~~~--g~~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~-d~g~~~~~ell~~Ik~ 134 (290)
T PRK12928 58 QGTATFLIMGSICTRRCAFCQVDK--GRPMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLP-DGGAAHFVATIAAIRA 134 (290)
T ss_pred CCEEEEEEecccccCcCCCCCccC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCccc-ccCHHHHHHHHHHHHh
Confidence 346789999999999999999987 6667899999999999999999999999998754332 111 368999999976
Q ss_pred hCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
..| .+|+..+.|+.+....+.|..|+++ ++..+...+|| ++++|+.|+|+++.++.
T Consensus 135 ~~p-----~~~I~~ltp~~~~~~~e~L~~l~~A--g~~i~~hnlEt-~~~vl~~m~r~~t~e~~ 190 (290)
T PRK12928 135 RNP-----GTGIEVLTPDFWGGQRERLATVLAA--KPDVFNHNLET-VPRLQKAVRRGADYQRS 190 (290)
T ss_pred cCC-----CCEEEEeccccccCCHHHHHHHHHc--CchhhcccCcC-cHHHHHHhCCCCCHHHH
Confidence 433 3344556675442111236666653 45556666886 69999999999998764
No 34
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.56 E-value=2.1e-14 Score=136.76 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=101.0
Q ss_pred cceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC-CCHHHHHHHHHH
Q 019874 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268 (334)
Q Consensus 190 ~~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~-~~l~~Ll~~l~~ 268 (334)
....+++.+++||+++|+||++++.+|+.++ .+++++++++.+.+.|+++|+|+|+|...|. |.+ ..+.+++++|.+
T Consensus 61 ~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~-~~eei~~~a~~~~~~GlkevvLTsv~~ddl~-d~g~~~l~~li~~I~~ 138 (302)
T TIGR00510 61 HGTATFMILGDICTRRCPFCDVAHGRNPLPP-DPEEPAKLAETIKDMGLKYVVITSVDRDDLE-DGGASHLAECIEAIRE 138 (302)
T ss_pred CCEEEEEecCcCcCCCCCcCCccCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEEeecCCCcc-cccHHHHHHHHHHHHh
Confidence 4466799999999999999999999888776 4799999999999999999999998876663 222 468999999987
Q ss_pred hCCCCCCceEEEeecCCCCh-hhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCc
Q 019874 269 ELPPDGSTMLRIGMTNPPFI-LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKS 331 (334)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i-~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~ 331 (334)
..| + ..+++ +.|+.. +.++ |..|++ +|+..+...+|+. +++++.|+|+++.++
T Consensus 139 ~~p--~-i~Iev--l~~d~~g~~e~--l~~l~~--aG~dv~~hnlEt~-~~l~~~vrr~~t~e~ 192 (302)
T TIGR00510 139 KLP--N-IKIET--LVPDFRGNIAA--LDILLD--APPDVYNHNLETV-ERLTPFVRPGATYRW 192 (302)
T ss_pred cCC--C-CEEEE--eCCcccCCHHH--HHHHHH--cCchhhcccccch-HHHHHHhCCCCCHHH
Confidence 555 3 24554 444322 2333 666665 4678888889987 899999999998875
No 35
>PRK07094 biotin synthase; Provisional
Probab=99.53 E-value=5.5e-14 Score=135.09 Aligned_cols=126 Identities=9% Similarity=0.092 Sum_probs=96.0
Q ss_pred eeeeeccCCCCCCCccccccccCCc-ccc-CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhC
Q 019874 193 VEILPINVGCLGACTYCKTKHARGH-LGS-YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG~-~rs-r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (334)
.+.|++++||+++|+||..+...+. .+. .++++|+++++.+.+.|+++|.|+|.+...|.. ..+.++++.|.+.
T Consensus 40 ~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~---~~l~~l~~~i~~~- 115 (323)
T PRK07094 40 RGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYELGYRTIVLQSGEDPYYTD---EKIADIIKEIKKE- 115 (323)
T ss_pred EEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCH---HHHHHHHHHHHcc-
Confidence 5678999999999999999876664 344 499999999999999999999998765333322 3678888888653
Q ss_pred CCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 271 ~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+ ++ .+.+ ++..++++. +..|++ +|+..+++|+||+|+++++.|+++++.+++
T Consensus 116 ~--~l-~i~~---~~g~~~~e~--l~~Lk~--aG~~~v~~glEs~~~~~~~~i~~~~s~~~~ 167 (323)
T PRK07094 116 L--DV-AITL---SLGERSYEE--YKAWKE--AGADRYLLRHETADKELYAKLHPGMSFENR 167 (323)
T ss_pred C--Cc-eEEE---ecCCCCHHH--HHHHHH--cCCCEEEeccccCCHHHHHHhCCCCCHHHH
Confidence 2 22 3333 333345544 677775 589999999999999999999999887764
No 36
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.52 E-value=7.6e-14 Score=133.88 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=92.6
Q ss_pred eeeeeeccCCCCC----CCccccccccCCccccCCHHHHHHHHHHHHHC-CCcE----E-EEeeccCCCCCCCCCCCHHH
Q 019874 192 FVEILPINVGCLG----ACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKE----V-WLSSEDTGAYGRDIGVNLPI 261 (334)
Q Consensus 192 ~~~~v~isrGC~~----~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~-G~ke----i-~l~~~d~~~yg~d~~~~l~~ 261 (334)
....|..+||||+ +|+||.++. +..+.++++.|+++++.+++. +.+. + .|++..+.....-....+.+
T Consensus 15 ~~~~i~~srGC~~~~~g~C~FC~~~~--~~~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~ 92 (313)
T TIGR01210 15 SLTIILRTRGCYWAREGGCYMCGYLA--DSSPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNY 92 (313)
T ss_pred eEEEEEeCCCCCCCCCCcCccCCCCC--CCCCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHH
Confidence 3446889999998 599997543 335678999999999998864 3331 1 24443322110000134678
Q ss_pred HHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCC-eEEEccCCcCHHHHH-HhCCCCCcCcc
Q 019874 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLS-VSQKIVPTKSV 332 (334)
Q Consensus 262 Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~-~l~igiQSgsd~vLk-~M~R~~t~e~v 332 (334)
|++.|.+ .+ ...++.+ +++|+.++++. |..|++ .||. .|.||+||+|+++|+ .|||++|.+++
T Consensus 93 i~~~l~~-~~--~~~~i~~-esrpd~i~~e~--L~~l~~--aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~ 157 (313)
T TIGR01210 93 IFEKIAQ-RD--NLKEVVV-ESRPEFIDEEK--LEELRK--IGVNVEVAVGLETANDRIREKSINKGSTFEDF 157 (313)
T ss_pred HHHHHHh-cC--CcceEEE-EeCCCcCCHHH--HHHHHH--cCCCEEEEEecCcCCHHHHHHhhCCCCCHHHH
Confidence 8888865 33 3456654 67999998866 777776 4898 799999999999995 89999998875
No 37
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.50 E-value=8.1e-14 Score=136.78 Aligned_cols=131 Identities=18% Similarity=0.270 Sum_probs=96.9
Q ss_pred eeeeeccCCCCCCCcccccccc--CCccccCCHHHHHHHHHHHHHC---CCcEEEEeeccCCCCCCCCCCCHHHHHHHHH
Q 019874 193 VEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~--rG~~rsr~~e~Iv~Ei~~l~~~---G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (334)
..||.|-- |+++|+||..+.. ++..+.+.++.+++|++.+... +++.|.|.|.+.+... ...+.+|++.+.
T Consensus 3 ~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~---~~~l~~ll~~i~ 78 (377)
T PRK08599 3 SAYIHIPF-CEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALS---AEQLERLLTAIH 78 (377)
T ss_pred eEEEEeCC-cCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCC---HHHHHHHHHHHH
Confidence 45677765 9999999998743 4556678899999999876554 4666766655444322 146888998887
Q ss_pred HhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 268 ~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+.++..+...+.+ .++|..++++. +..|++ .|+.+++||+||+|+++|+.|+|+++.+++
T Consensus 79 ~~~~~~~~~eit~-e~~p~~l~~e~--l~~l~~--~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~ 138 (377)
T PRK08599 79 RNLPLSGLEEFTF-EANPGDLTKEK--LQVLKD--SGVNRISLGVQTFNDELLKKIGRTHNEEDV 138 (377)
T ss_pred HhCCCCCCCEEEE-EeCCCCCCHHH--HHHHHH--cCCCEEEEecccCCHHHHHHcCCCCCHHHH
Confidence 7543112224444 58999998866 777775 489999999999999999999999998765
No 38
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.40 E-value=1.1e-12 Score=111.24 Aligned_cols=125 Identities=17% Similarity=0.288 Sum_probs=93.7
Q ss_pred eeccCCCCCCCccccccc--cCCccccCCHHHHHHHHHHH-HHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCC
Q 019874 196 LPINVGCLGACTYCKTKH--ARGHLGSYTVESLVGRVRTV-IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (334)
Q Consensus 196 v~isrGC~~~CsfC~ip~--~rG~~rsr~~e~Iv~Ei~~l-~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (334)
|++++||+++|.||..+. ..+..+.+++++++++++.+ ...|.+.+.|+|.+...+ ..+.+++..+.+...
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~-----~~~~~~~~~~~~~~~- 74 (166)
T PF04055_consen 1 IETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLH-----PDFIELLELLRKIKK- 74 (166)
T ss_dssp EEEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGS-----CHHHHHHHHHHHCTC-
T ss_pred CEECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcc-----hhHHHHHHHHHHhhc-
Confidence 578999999999999987 45568899999999999999 588888888887776654 357777777765321
Q ss_pred CCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHH-HHHHhCCCCCcCcc
Q 019874 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA-VLSVSQKIVPTKSV 332 (334)
Q Consensus 273 ~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~-vLk~M~R~~t~e~v 332 (334)
...++.+ .+++...+++. +..+++. ++.++.+++||.+++ +++.|+++.+.+++
T Consensus 75 -~~~~i~~-~t~~~~~~~~~--l~~l~~~--~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~ 129 (166)
T PF04055_consen 75 -RGIRISI-NTNGTLLDEEL--LDELKKL--GVDRIRISLESLDEESVLRIINRGKSFERV 129 (166)
T ss_dssp -TTEEEEE-EEESTTHCHHH--HHHHHHT--TCSEEEEEEBSSSHHHHHHHHSSTSHHHHH
T ss_pred -cccceee-eccccchhHHH--HHHHHhc--CccEEecccccCCHHHhhhhhcCCCCHHHH
Confidence 2345554 45666554544 6777764 589999999999999 99999988876653
No 39
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.38 E-value=1.9e-12 Score=129.97 Aligned_cols=132 Identities=14% Similarity=0.143 Sum_probs=96.1
Q ss_pred eeeeeeccCCCCCCCcccccccc--CCccccCCHHHHHHHHHHHHHC------CCcEEEEeeccCCCCCCCCCCCHHHHH
Q 019874 192 FVEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIGVNLPILL 263 (334)
Q Consensus 192 ~~~~v~isrGC~~~CsfC~ip~~--rG~~rsr~~e~Iv~Ei~~l~~~------G~kei~l~~~d~~~yg~d~~~~l~~Ll 263 (334)
...||.|-- |+++|+||..... .+..+.+.++.+++|++...+. .++.|.|-|.+.+.... ..+.+|+
T Consensus 62 ~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~~---~~l~~ll 137 (449)
T PRK09058 62 RLLYIHIPF-CRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSA---EDLARLI 137 (449)
T ss_pred eEEEEEeCC-cCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCCH---HHHHHHH
Confidence 344555544 9999999986533 3345667899999999987642 35667666655443321 3678888
Q ss_pred HHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 264 ~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+.|.+.++......+.+ ..+|..++++. |..|++ .|+++|+||+||+++++|+.|+|+++.+++
T Consensus 138 ~~i~~~~~l~~~~eiti-E~~p~~~t~e~--l~~l~~--aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~ 201 (449)
T PRK09058 138 TALREYLPLAPDCEITL-EGRINGFDDEK--ADAALD--AGANRFSIGVQSFNTQVRRRAGRKDDREEV 201 (449)
T ss_pred HHHHHhCCCCCCCEEEE-EeCcCcCCHHH--HHHHHH--cCCCEEEecCCcCCHHHHHHhCCCCCHHHH
Confidence 88877655222334554 57999998866 777775 589999999999999999999999998765
No 40
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.37 E-value=1.7e-12 Score=125.50 Aligned_cols=128 Identities=13% Similarity=0.188 Sum_probs=93.8
Q ss_pred eeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCC-----CC----CCHHHHH
Q 019874 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-----IG----VNLPILL 263 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d-----~~----~~l~~Ll 263 (334)
..+|.+++||+++|+||..+...|..+++++|+|+++++.+.+.|++++.|+|.+...++.+ +. ..+.+++
T Consensus 13 ~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i 92 (336)
T PRK06245 13 NVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYL 92 (336)
T ss_pred ceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHH
Confidence 35789999999999999998888888899999999999999999999999998665333311 00 1245566
Q ss_pred HHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCc
Q 019874 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPT 329 (334)
Q Consensus 264 ~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~ 329 (334)
+++.+.+. .+-.+.+++|..++++. +..|++. + ..+++++||+++.+++.|+|.++.
T Consensus 93 ~~i~~~~~----~~g~~~~~~~~~lt~e~--i~~Lk~a--g-~~l~~~~et~~e~l~~~v~~~~~~ 149 (336)
T PRK06245 93 YDLCELAL----EEGLLPHTNAGILTREE--MEKLKEV--N-ASMGLMLEQTSPRLLNTVHRGSPG 149 (336)
T ss_pred HHHHHHHh----hcCCCccccCCCCCHHH--HHHHHHh--C-CCCCCCccccchhhHHhhccCCCC
Confidence 55554321 11122357888888765 7777653 3 357888999999999999776653
No 41
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.37 E-value=2.5e-12 Score=126.10 Aligned_cols=128 Identities=17% Similarity=0.240 Sum_probs=90.6
Q ss_pred eeeccCCCCCCCccccccccCCc--cccCCHHHHHHHHHHHHH-CCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCC
Q 019874 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (334)
Q Consensus 195 ~v~isrGC~~~CsfC~ip~~rG~--~rsr~~e~Iv~Ei~~l~~-~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (334)
||.|-- |+++|+||..+...++ .+.+.++.|++|++.+.. .+++.|.|.|.+.+.... ..+..|++.+.. ++
T Consensus 7 YiHiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~---~~l~~L~~~i~~-~~ 81 (374)
T PRK05799 7 YIHIPF-CKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSL---EALEILKETIKK-LN 81 (374)
T ss_pred EEEeCC-ccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCCH---HHHHHHHHHHHh-CC
Confidence 444444 9999999999876554 344569999999987643 357778776655443221 245567777653 43
Q ss_pred CCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 272 ~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
......+.+ .++|..++++. +..|++ .|+.+++||+||++|++|+.|+|+++.+++
T Consensus 82 ~~~~~eiti-e~~p~~~t~e~--l~~l~~--~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~ 137 (374)
T PRK05799 82 KKEDLEFTV-EGNPGTFTEEK--LKILKS--MGVNRLSIGLQAWQNSLLKYLGRIHTFEEF 137 (374)
T ss_pred CCCCCEEEE-EeCCCcCCHHH--HHHHHH--cCCCEEEEECccCCHHHHHHcCCCCCHHHH
Confidence 111123333 47999999876 777775 489999999999999999999999998765
No 42
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.36 E-value=3e-12 Score=124.89 Aligned_cols=139 Identities=21% Similarity=0.283 Sum_probs=107.7
Q ss_pred ceeeeeeccCCCCCC----CccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeec-cCCCCCCCC---------C
Q 019874 191 KFVEILPINVGCLGA----CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSE-DTGAYGRDI---------G 256 (334)
Q Consensus 191 ~~~~~v~isrGC~~~----CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~-d~~~yg~d~---------~ 256 (334)
..++-|+++|||+++ ||||..|.. |...+||+|+|++||+.|.+.|++.+.|--| |+.+|+.+. +
T Consensus 182 ~vi~EiETyRGC~r~~~ggCSFCtEp~~-g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnP 260 (560)
T COG1031 182 YVICEIETYRGCPRRVSGGCSFCTEPVR-GRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNP 260 (560)
T ss_pred eEEEEEeeccCCcccccCCCccccCcCc-CCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCH
Confidence 356789999999977 999999876 9999999999999999999999999998643 778887652 1
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEeecCCCChhh---hHHHH-HHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE---HLKEI-AEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 257 ~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~---~l~~l-~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+.+.+|+..+...-| +.+.+.+...||..+-+ +..++ ..+.+...--....+|+||.+++|.+.-|=..|.|++
T Consensus 261 ealekL~~Gir~~AP--~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEv 338 (560)
T COG1031 261 EALEKLFRGIRNVAP--NLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEV 338 (560)
T ss_pred HHHHHHHHHHHhhCC--CCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhccccCCHHHH
Confidence 347788888877666 77888888888886643 22222 2333332223678999999999999999888887764
No 43
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.36 E-value=4.8e-12 Score=124.24 Aligned_cols=123 Identities=18% Similarity=0.276 Sum_probs=88.0
Q ss_pred CCCCCccccccccCC-ccc-cC----CHHHHHHHHHHHHHC------CCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHh
Q 019874 202 CLGACTYCKTKHARG-HLG-SY----TVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (334)
Q Consensus 202 C~~~CsfC~ip~~rG-~~r-sr----~~e~Iv~Ei~~l~~~------G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (334)
|+++|+||..+...+ +.+ +. -++.+.+|++...+. .++.|.|.|.+.+.... ..+.+|++.+.+.
T Consensus 12 C~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~---~~l~~ll~~i~~~ 88 (375)
T PRK05628 12 CATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGA---EGLARVLDAVRDT 88 (375)
T ss_pred cCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCH---HHHHHHHHHHHHh
Confidence 999999999865432 322 23 388999999876643 25677776666554432 3688888888764
Q ss_pred CCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
++......+.+ .++|..++++. |..|++ .|+++|+||+||+++++|+.|+|+++.+++
T Consensus 89 ~~~~~~~e~t~-e~~p~~i~~e~--l~~l~~--~G~~rvslGvQS~~~~~L~~l~R~~s~~~~ 146 (375)
T PRK05628 89 FGLAPGAEVTT-EANPESTSPEF--FAALRA--AGFTRVSLGMQSAAPHVLAVLDRTHTPGRA 146 (375)
T ss_pred CCCCCCCEEEE-EeCCCCCCHHH--HHHHHH--cCCCEEEEecccCCHHHHHHcCCCCCHHHH
Confidence 42111122222 57999999866 777775 589999999999999999999999998865
No 44
>PLN02428 lipoic acid synthase
Probab=99.36 E-value=4.3e-12 Score=122.68 Aligned_cols=128 Identities=15% Similarity=0.175 Sum_probs=100.1
Q ss_pred eeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC-CCHHHHHHHHHHhC
Q 019874 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAEL 270 (334)
Q Consensus 192 ~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~-~~l~~Ll~~l~~~i 270 (334)
...++.+++||+++|.||.++..+++.+.+ ++++.+.++.+.+.|+++++|++.+...| .|.+ ..+.++++.|.+..
T Consensus 102 taT~milg~gCtr~CrFCav~~~~~p~~~d-~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir~~~ 179 (349)
T PLN02428 102 TATIMILGDTCTRGCRFCAVKTSRTPPPPD-PDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLKQLK 179 (349)
T ss_pred eEEEEEecCCCCCCCCCCcCCCCCCCCCCC-hhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHHHhC
Confidence 345778999999999999999887776666 67788888888888999999999876555 2322 46889999997644
Q ss_pred CCCCCceEEEeecCCCCh-hhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhC-CCCCcCc
Q 019874 271 PPDGSTMLRIGMTNPPFI-LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQ-KIVPTKS 331 (334)
Q Consensus 271 ~~~~~~~ir~~~~~p~~i-~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~-R~~t~e~ 331 (334)
| ++++..+.|+.+ ++++ |..|++ +|+..++.++|+ ++++.+.|+ ++.+.++
T Consensus 180 P-----~i~Ie~L~pdf~~d~el--L~~L~e--AG~d~i~hnlET-v~rL~~~Ir~~~~sye~ 232 (349)
T PLN02428 180 P-----EILVEALVPDFRGDLGA--VETVAT--SGLDVFAHNIET-VERLQRIVRDPRAGYKQ 232 (349)
T ss_pred C-----CcEEEEeCccccCCHHH--HHHHHH--cCCCEEccCccC-cHHHHHHhcCCCCCHHH
Confidence 3 567777888765 5555 777775 589999999997 899999999 6777654
No 45
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.36 E-value=1.4e-12 Score=127.23 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=89.4
Q ss_pred eeeeeccCCCCCCCccccccccCC-----ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHH
Q 019874 193 VEILPINVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG-----~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (334)
+..|+. |+++|.||..+...+ .++.+.+++|..|++.+....++.|.|-|.+.+... ...+.+|++.|.
T Consensus 10 YiHiPF---C~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~---~~~l~~ll~~i~ 83 (353)
T PRK05904 10 YIHIPF---CQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLN---DQLLDILLSTIK 83 (353)
T ss_pred EEEeCC---ccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCC---HHHHHHHHHHHH
Confidence 344555 999999999865422 133445666666666542234667777665544332 135778888887
Q ss_pred HhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 268 ~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+.++ ....+.+ .++|..++++. |..|++ .|+++|+||+||+++++|+.|+|+++.+++
T Consensus 84 ~~~~--~~~eiti-E~nP~~lt~e~--l~~lk~--~G~nrisiGvQS~~d~vL~~l~R~~~~~~~ 141 (353)
T PRK05904 84 PYVD--NNCEFTI-ECNPELITQSQ--INLLKK--NKVNRISLGVQSMNNNILKQLNRTHTIQDS 141 (353)
T ss_pred HhcC--CCCeEEE-EeccCcCCHHH--HHHHHH--cCCCEEEEecccCCHHHHHHcCCCCCHHHH
Confidence 6554 3445655 57999998866 777776 489999999999999999999999998865
No 46
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.34 E-value=2.9e-12 Score=124.76 Aligned_cols=121 Identities=14% Similarity=0.199 Sum_probs=90.9
Q ss_pred CCCCCccccccccC-C-ccccCCHHHHHHHHHHHHH----CCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCC
Q 019874 202 CLGACTYCKTKHAR-G-HLGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275 (334)
Q Consensus 202 C~~~CsfC~ip~~r-G-~~rsr~~e~Iv~Ei~~l~~----~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~ 275 (334)
|+.+|.||..+... + ..+.+.++.+++|++...+ .+++.|.|.|.+.+.... ..+.+|++.|.+.+. ..
T Consensus 10 C~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~---~~l~~ll~~i~~~~~--~~ 84 (350)
T PRK08446 10 CESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSA---KFYEPIFEIISPYLS--KD 84 (350)
T ss_pred ccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCH---HHHHHHHHHHHHhcC--CC
Confidence 99999999976542 2 3566789999999997653 267778877655543321 357888888876433 23
Q ss_pred ceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 276 ~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
..+.+ .+||..++++. |+.|++ .|+++|+||+||+++++|+.|+|+++.+++
T Consensus 85 ~eiti-E~nP~~~~~e~--l~~l~~--~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~ 136 (350)
T PRK08446 85 CEITT-EANPNSATKAW--LKGMKN--LGVNRISFGVQSFNEDKLKFLGRIHSQKQI 136 (350)
T ss_pred ceEEE-EeCCCCCCHHH--HHHHHH--cCCCEEEEecccCCHHHHHHcCCCCCHHHH
Confidence 34544 57999998866 777775 589999999999999999999999998765
No 47
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.31 E-value=1e-11 Score=124.95 Aligned_cols=130 Identities=17% Similarity=0.269 Sum_probs=96.0
Q ss_pred eeeeccCCCCCCCccccccccCC---ccccCCHHHHHHHHHHHHH-----CCCcEEEEeeccCCCCCCCCCCCHHHHHHH
Q 019874 194 EILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIA-----DGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (334)
Q Consensus 194 ~~v~isrGC~~~CsfC~ip~~rG---~~rsr~~e~Iv~Ei~~l~~-----~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~ 265 (334)
.||-|-. |+++|.||..+...+ ..+...++.+++|++.+.. .+++.|.|.|.+.+.... ..+.+|++.
T Consensus 52 lYiHiPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~~---~~l~~ll~~ 127 (455)
T TIGR00538 52 LYVHIPF-CHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLSP---EQISRLMKL 127 (455)
T ss_pred EEEEeCC-ccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCCH---HHHHHHHHH
Confidence 3444433 999999999876543 2334468999999998753 368888888876654322 468888888
Q ss_pred HHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 266 l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+.+.++......+.+ .++|..++++. |..|++ .|+..|+||+||+++++|+.|+|+++.+++
T Consensus 128 i~~~~~~~~~~eiti-e~np~~l~~e~--l~~lk~--~G~~risiGvqS~~~~~l~~l~r~~~~~~~ 189 (455)
T TIGR00538 128 IRENFPFNADAEISI-EIDPRYITKDV--IDALRD--EGFNRLSFGVQDFNKEVQQAVNRIQPEEMI 189 (455)
T ss_pred HHHhCCCCCCCeEEE-EeccCcCCHHH--HHHHHH--cCCCEEEEcCCCCCHHHHHHhCCCCCHHHH
Confidence 876544222234554 57999998876 777776 489999999999999999999999987764
No 48
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.29 E-value=1.6e-11 Score=108.21 Aligned_cols=132 Identities=28% Similarity=0.383 Sum_probs=96.1
Q ss_pred eeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCC-----CcEEEEeeccCCCCCCCCCCCHHHHHHHHH
Q 019874 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG-----VKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G-----~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (334)
.+++.+++||+++|.||..+...|+.+..+++++.++++.+.+.| .+.+.|+|.+...+.. ..+.++++.+.
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~---~~~~~~~~~~~ 78 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSP---EQLEELLEAIR 78 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCH---HHHHHHHHHHH
Confidence 457899999999999999887655567789999999999997655 3666676655443321 14778888887
Q ss_pred HhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 268 ~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+..+......+.+ .+++..++++. +..|++. ++..+.++++|+++++.+.++++.+.+++
T Consensus 79 ~~~~~~~~~~~~~-~tn~~~~~~~~--~~~l~~~--~~~~i~isl~~~~~~~~~~~~~~~~~~~~ 138 (216)
T smart00729 79 EILGLADDVEITI-ETRPGTLTEEL--LEALKEA--GVNRVSLGVQSGSDEVLKAINRGHTVEDV 138 (216)
T ss_pred HhCCCCCCeEEEE-EeCcccCCHHH--HHHHHHc--CCCeEEEecccCCHHHHHHhcCCCCHHHH
Confidence 6432000234444 46777777766 7777764 67799999999999999999999886543
No 49
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.29 E-value=1.2e-11 Score=121.74 Aligned_cols=123 Identities=15% Similarity=0.226 Sum_probs=90.5
Q ss_pred CCCCCccccccccCC-cc-ccCCHHHHHHHHHHHHHC----CCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCC
Q 019874 202 CLGACTYCKTKHARG-HL-GSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275 (334)
Q Consensus 202 C~~~CsfC~ip~~rG-~~-rsr~~e~Iv~Ei~~l~~~----G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~ 275 (334)
|.++|+||..+.... +. ..+.++.+++|++...+. .++.|.|.|.+.+... ...+.+|++.|.+.++....
T Consensus 14 C~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~L~~ll~~i~~~f~~~~~ 90 (380)
T PRK09057 14 CLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQ---PETVAALLDAIARLWPVADD 90 (380)
T ss_pred cCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCC---HHHHHHHHHHHHHhCCCCCC
Confidence 999999999765432 11 234789999999976542 4667777665554332 13678888888876652222
Q ss_pred ceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 276 ~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
..+.+ .++|..++.+. |..|++ .|+++|+||+||++|++|+.|||+++.+++
T Consensus 91 ~eit~-E~~P~~i~~e~--L~~l~~--~GvnrislGvQS~~d~vL~~l~R~~~~~~~ 142 (380)
T PRK09057 91 IEITL-EANPTSVEAGR--FRGYRA--AGVNRVSLGVQALNDADLRFLGRLHSVAEA 142 (380)
T ss_pred ccEEE-EECcCcCCHHH--HHHHHH--cCCCEEEEecccCCHHHHHHcCCCCCHHHH
Confidence 34554 58999998755 777775 589999999999999999999999998865
No 50
>PRK06256 biotin synthase; Validated
Probab=99.29 E-value=1.6e-11 Score=118.61 Aligned_cols=121 Identities=13% Similarity=0.215 Sum_probs=86.6
Q ss_pred cCCCCCCCccccccccCC----ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 019874 199 NVGCLGACTYCKTKHARG----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274 (334)
Q Consensus 199 srGC~~~CsfC~ip~~rG----~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~ 274 (334)
++||+++|.||..+...+ +++.+++|+|+++++.+.+.|++++.|++......+.+. ..+.++++.|.+. . +
T Consensus 65 s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~-~~~~e~i~~i~~~-~--~ 140 (336)
T PRK06256 65 SGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEV-DQVVEAVKAIKEE-T--D 140 (336)
T ss_pred CCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHH-HHHHHHHHHHHhc-C--C
Confidence 899999999999986543 356789999999999999999999988653221111100 2456667766543 2 2
Q ss_pred CceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 275 ~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
. .+ .++...++++. +..|++ +|+..+++++|| |+++++.|+++++.+++
T Consensus 141 i---~~-~~~~g~l~~e~--l~~Lke--aG~~~v~~~lEt-s~~~~~~i~~~~t~~~~ 189 (336)
T PRK06256 141 L---EI-CACLGLLTEEQ--AERLKE--AGVDRYNHNLET-SRSYFPNVVTTHTYEDR 189 (336)
T ss_pred C---cE-EecCCcCCHHH--HHHHHH--hCCCEEecCCcc-CHHHHhhcCCCCCHHHH
Confidence 2 22 23334466655 677775 589999999999 99999999999887653
No 51
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.28 E-value=1.7e-11 Score=121.53 Aligned_cols=123 Identities=14% Similarity=0.167 Sum_probs=89.4
Q ss_pred CCCCCcccccccc-CCc-cc-------cCCHHHHHHHHHHHHHC--CCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhC
Q 019874 202 CLGACTYCKTKHA-RGH-LG-------SYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (334)
Q Consensus 202 C~~~CsfC~ip~~-rG~-~r-------sr~~e~Iv~Ei~~l~~~--G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (334)
|+++|.||..+.. .|+ .+ .+-++.+++|++..... +++.|.|.|.+.+.... ..+.+|++.|.+.+
T Consensus 20 C~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~---~~l~~ll~~i~~~~ 96 (400)
T PRK07379 20 CRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLSV---EQLERILTTLDQRF 96 (400)
T ss_pred ccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCH---HHHHHHHHHHHHhC
Confidence 9999999998643 222 21 22467889999865432 57788887766554422 46888998887655
Q ss_pred CCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 271 ~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+......+++ .++|..++++. |..|++ .|+++|+||+||++|++|+.|||+++.+++
T Consensus 97 ~~~~~~eit~-E~~P~~lt~e~--l~~l~~--~GvnrislGvQS~~d~~L~~l~R~~~~~~~ 153 (400)
T PRK07379 97 GIAPDAEISL-EIDPGTFDLEQ--LQGYRS--LGVNRVSLGVQAFQDELLALCGRSHRVKDI 153 (400)
T ss_pred CCCCCCEEEE-EeCCCcCCHHH--HHHHHH--CCCCEEEEEcccCCHHHHHHhCCCCCHHHH
Confidence 3212235554 58999998766 777775 589999999999999999999999998875
No 52
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.28 E-value=1.9e-11 Score=123.74 Aligned_cols=134 Identities=15% Similarity=0.219 Sum_probs=95.0
Q ss_pred ceeeeeeccCCCCCCCcccccccc--CC-c-cccCCHHHHHHHHHHHHH------CCCcEEEEeeccCCCCCCCCCCCHH
Q 019874 191 KFVEILPINVGCLGACTYCKTKHA--RG-H-LGSYTVESLVGRVRTVIA------DGVKEVWLSSEDTGAYGRDIGVNLP 260 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~--rG-~-~rsr~~e~Iv~Ei~~l~~------~G~kei~l~~~d~~~yg~d~~~~l~ 260 (334)
....||-|- -||.+|.||..+.. .+ + .....++.+++|++.+.+ .++..|.|.|.+.+.... ..+.
T Consensus 163 ~~sLYihIP-FC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~~---~~L~ 238 (488)
T PRK08207 163 EVSIYIGIP-FCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLTA---EELE 238 (488)
T ss_pred ceEEEEecC-CCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCCH---HHHH
Confidence 445566664 49999999998754 22 1 223458999999997643 145677777655543321 4688
Q ss_pred HHHHHHHHhCCC-CCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 261 ILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 261 ~Ll~~l~~~i~~-~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+|++.+.+.++. .+...+.+...+|+.++++. |..|++ .|+.+++||+||+++++|+.|+|++|.+++
T Consensus 239 ~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~--L~~Lk~--~Gv~RISIGvQS~~d~vLk~igR~ht~e~v 307 (488)
T PRK08207 239 RLLEEIYENFPDVKNVKEFTVEAGRPDTITEEK--LEVLKK--YGVDRISINPQTMNDETLKAIGRHHTVEDI 307 (488)
T ss_pred HHHHHHHHhccccCCceEEEEEcCCCCCCCHHH--HHHHHh--cCCCeEEEcCCcCCHHHHHHhCCCCCHHHH
Confidence 899988765531 12223444445899999877 777775 489999999999999999999999998875
No 53
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.28 E-value=1.8e-11 Score=122.34 Aligned_cols=133 Identities=16% Similarity=0.162 Sum_probs=93.7
Q ss_pred ceeeeeeccCCCCCCCccccccccCCc---cccCCHHHHHHHHHHHHHC----CCcEEEEeeccCCCCCCCCCCCHHHHH
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILL 263 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~---~rsr~~e~Iv~Ei~~l~~~----G~kei~l~~~d~~~yg~d~~~~l~~Ll 263 (334)
+...||.|-. |+++|+||..+...+. .....++.+++|++.+.+. .+..|.|.|.+.+... ...+.+|+
T Consensus 39 ~~~lYvHIPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~Ll 114 (430)
T PRK08208 39 ALSLYIHIPF-CEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLN---AAELEKLF 114 (430)
T ss_pred ceEEEEEeCC-ccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCC---HHHHHHHH
Confidence 4456777755 9999999998765442 3456789999999977643 2445555444333221 13577888
Q ss_pred HHHHHhCCCCC-CceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 264 NAIVAELPPDG-STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 264 ~~l~~~i~~~~-~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+.|.+.++... ...+.+ .++|..++++. |..|++ .|+.+|+||+||+++++|+.|+|+++.+++
T Consensus 115 ~~i~~~~~~~~~~~eiti-E~~P~~lt~e~--l~~l~~--~G~~rvslGvQS~~~~~L~~l~R~~~~~~~ 179 (430)
T PRK08208 115 DSVERVLGVDLGNIPKSV-ETSPATTTAEK--LALLAA--RGVNRLSIGVQSFHDSELHALHRPQKRADV 179 (430)
T ss_pred HHHHHhCCCCCCCceEEE-EeCcCcCCHHH--HHHHHH--cCCCEEEEecccCCHHHHHHhCCCCCHHHH
Confidence 88876443111 123443 47899998876 777775 489999999999999999999999998765
No 54
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.27 E-value=2.2e-11 Score=122.41 Aligned_cols=132 Identities=14% Similarity=0.192 Sum_probs=96.0
Q ss_pred eeeeeeccCCCCCCCccccccccCC-c--cccCCHHHHHHHHHHHHHC-----CCcEEEEeeccCCCCCCCCCCCHHHHH
Q 019874 192 FVEILPINVGCLGACTYCKTKHARG-H--LGSYTVESLVGRVRTVIAD-----GVKEVWLSSEDTGAYGRDIGVNLPILL 263 (334)
Q Consensus 192 ~~~~v~isrGC~~~CsfC~ip~~rG-~--~rsr~~e~Iv~Ei~~l~~~-----G~kei~l~~~d~~~yg~d~~~~l~~Ll 263 (334)
...||.|-. |+++|.||....... + .....++.+++||+...+. ++..|.|.|.+.+.+.. ..+.+|+
T Consensus 51 ~~LYvHIPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~---~~l~~ll 126 (453)
T PRK13347 51 VSLYLHVPF-CRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNP---DQFERLM 126 (453)
T ss_pred eEEEEEeCC-ccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCH---HHHHHHH
Confidence 345677766 999999998654321 1 1223478999999976542 46788888776665432 4688999
Q ss_pred HHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 264 ~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+.|.+.++......+.+ .++|..++++. |..|++ .|+.++.||+||+++++|+.|+|+++.+++
T Consensus 127 ~~i~~~~~~~~~~e~ti-e~~p~~lt~e~--l~~L~~--~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~ 190 (453)
T PRK13347 127 AALRDAFDFAPEAEIAV-EIDPRTVTAEM--LQALAA--LGFNRASFGVQDFDPQVQKAINRIQPEEMV 190 (453)
T ss_pred HHHHHhCCCCCCceEEE-EeccccCCHHH--HHHHHH--cCCCEEEECCCCCCHHHHHHhCCCCCHHHH
Confidence 99876553211234554 57999999876 777776 489999999999999999999999998764
No 55
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.27 E-value=2.6e-11 Score=121.27 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=88.1
Q ss_pred ceeeeeeccCCCCCCCcccccccc-CCccc-cCCHHHHHHHHHHHHHCC--CcEEEEeeccCCCCCCCCCCCHHHHHHHH
Q 019874 191 KFVEILPINVGCLGACTYCKTKHA-RGHLG-SYTVESLVGRVRTVIADG--VKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~-rG~~r-sr~~e~Iv~Ei~~l~~~G--~kei~l~~~d~~~yg~d~~~~l~~Ll~~l 266 (334)
+...||.|-- |+++|+||..+.. ++..+ ...++.+++|++.+.+.| +..|.|-|.+.+.. ...|.+|++.+
T Consensus 52 ~~~LYvHIPF-C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGTPs~l----~~~L~~ll~~i 126 (433)
T PRK08629 52 KYMLYAHVPF-CHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGTTTIL----EDELAKTLELA 126 (433)
T ss_pred cEEEEEEeCC-ccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCccccC----HHHHHHHHHHH
Confidence 3344444433 9999999998754 23222 235899999999877655 44565555443321 13577788777
Q ss_pred HHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcC
Q 019874 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTK 330 (334)
Q Consensus 267 ~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e 330 (334)
.+.+ .+..+.+ .++|..++++. |..|++ . |++++||+||++|++|+.|+|.++.+
T Consensus 127 ~~~f---~i~eis~-E~~P~~lt~e~--L~~l~~--~-vnrlsiGVQS~~d~vLk~~gR~h~~~ 181 (433)
T PRK08629 127 KKLF---SIKEVSC-ESDPNHLDPPK--LKQLKG--L-IDRLSIGVQSFNDDILKMVDRYEKFG 181 (433)
T ss_pred HHhC---CCceEEE-EeCcccCCHHH--HHHHHH--h-CCeEEEecCcCCHHHHHHcCCCCChh
Confidence 6544 3445665 58999999866 776654 4 99999999999999999999999754
No 56
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.25 E-value=3.3e-11 Score=121.19 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=91.3
Q ss_pred CCCCCccccccccCC--c-cccCCHHHHHHHHHHHHHC-----CCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCC
Q 019874 202 CLGACTYCKTKHARG--H-LGSYTVESLVGRVRTVIAD-----GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (334)
Q Consensus 202 C~~~CsfC~ip~~rG--~-~rsr~~e~Iv~Ei~~l~~~-----G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~ 273 (334)
|+++|+||..+...+ + ...+.++.|++|++.+.+. ++..|.|.|.+.+... ...+.+|++.+.+.++..
T Consensus 59 C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~---~~~l~~ll~~l~~~~~~~ 135 (453)
T PRK09249 59 CRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLS---PEQLRRLMALLREHFNFA 135 (453)
T ss_pred ccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCC---HHHHHHHHHHHHHhCCCC
Confidence 999999998765433 2 2335789999999976642 4677888776554432 146888888887654321
Q ss_pred CCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 274 ~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
....+.+ .++|..++++. |..|++ .||.+|+||+||+++++|+.|+|+++.+++
T Consensus 136 ~~~e~ti-e~np~~lt~e~--l~~l~~--aG~~risiGvqS~~~~~L~~l~r~~~~~~~ 189 (453)
T PRK09249 136 PDAEISI-EIDPRELDLEM--LDALRE--LGFNRLSLGVQDFDPEVQKAVNRIQPFEFT 189 (453)
T ss_pred CCCEEEE-EecCCcCCHHH--HHHHHH--cCCCEEEECCCCCCHHHHHHhCCCCCHHHH
Confidence 2234554 58999999876 777776 489999999999999999999999988764
No 57
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.24 E-value=2.7e-11 Score=119.75 Aligned_cols=130 Identities=19% Similarity=0.271 Sum_probs=94.4
Q ss_pred eeeeeeccCCCCCCCccccccccCCc-----cccCCHHHHHHHHHHHHH----CCCcEEEEeeccCCCCCCCCCCCHHHH
Q 019874 192 FVEILPINVGCLGACTYCKTKHARGH-----LGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPIL 262 (334)
Q Consensus 192 ~~~~v~isrGC~~~CsfC~ip~~rG~-----~rsr~~e~Iv~Ei~~l~~----~G~kei~l~~~d~~~yg~d~~~~l~~L 262 (334)
.+..|+. |..+|.||..+..... ...+-.+.+.+|++.... ..++.|.|.|.+.+.... ..|.+|
T Consensus 22 lYiHIPF---C~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~~---~~L~~l 95 (394)
T PRK08898 22 LYVHFPW---CVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSA---AGLDRL 95 (394)
T ss_pred EEEEeCC---ccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCCH---HHHHHH
Confidence 3344555 9999999997644221 124568899999986542 236677777666554422 368889
Q ss_pred HHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 263 l~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
++.|.+.++......+.+ ..+|..++.+. |..|++ .|++.++||+||++|++|+.|+|+++.+++
T Consensus 96 l~~i~~~~~~~~~~eit~-E~~p~~~~~e~--L~~l~~--~GvnrisiGvQS~~~~~L~~l~R~~~~~~~ 160 (394)
T PRK08898 96 LSDVRALLPLDPDAEITL-EANPGTFEAEK--FAQFRA--SGVNRLSIGIQSFNDAHLKALGRIHDGAEA 160 (394)
T ss_pred HHHHHHhCCCCCCCeEEE-EECCCCCCHHH--HHHHHH--cCCCeEEEecccCCHHHHHHhCCCCCHHHH
Confidence 998887776323346665 67999998754 777776 589999999999999999999999998764
No 58
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.24 E-value=3.1e-11 Score=115.36 Aligned_cols=128 Identities=13% Similarity=0.212 Sum_probs=85.6
Q ss_pred eeeccCCCCC--------CCccccccccCCccc---cCCHHHHHHHHHHHHHC--CCcE--EEEeeccCCCCCCCCCCCH
Q 019874 195 ILPINVGCLG--------ACTYCKTKHARGHLG---SYTVESLVGRVRTVIAD--GVKE--VWLSSEDTGAYGRDIGVNL 259 (334)
Q Consensus 195 ~v~isrGC~~--------~CsfC~ip~~rG~~r---sr~~e~Iv~Ei~~l~~~--G~ke--i~l~~~d~~~yg~d~~~~l 259 (334)
.|-..-+||| .|+||.... .++++ .+|.++|.++++...+. ..+. +.|.|-+.+ |.. ...|
T Consensus 21 ~~~~g~~cpnrdg~~~~~gC~FC~~~~-~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt~t-~l~--~~~L 96 (302)
T TIGR01212 21 TLHGGFSCPNRDGTKGRGGCTFCNDAS-RPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYTNT-YAP--VEVL 96 (302)
T ss_pred ecCCCCCCCCCCCCCCCCCcccCCCCC-CccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCCcC-CCC--HHHH
Confidence 4566788998 599998643 34565 45666777666655432 1122 445443333 321 1467
Q ss_pred HHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhC-CCCC-CeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 260 PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVY-SFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 260 ~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~-~~g~-~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
.+|++.+.+ .+ ....+.+ +++|+.++++. ++.|+.. .+|+ .++++|+||+++++|+.|||+++.+++
T Consensus 97 ~~l~~~i~~-~~--~~~~isi-~trpd~l~~e~--l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~ 165 (302)
T TIGR01212 97 KEMYEQALS-YD--DVVGLSV-GTRPDCVPDEV--LDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFACY 165 (302)
T ss_pred HHHHHHHhC-CC--CEEEEEE-EecCCcCCHHH--HHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHHH
Confidence 888888865 55 4556665 57999998765 3333321 3578 689999999999999999999998765
No 59
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.23 E-value=3.2e-11 Score=115.50 Aligned_cols=129 Identities=15% Similarity=0.248 Sum_probs=90.7
Q ss_pred eeeeccCCCCCCCccccccccCC--ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCC
Q 019874 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (334)
Q Consensus 194 ~~v~isrGC~~~CsfC~ip~~rG--~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (334)
..|.+++||+++|.||......+ +.+.+++|+|+++++...+.|+++|.|+|.+...+.. ..+.++++.|.+..+
T Consensus 7 ~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~---~~~~~i~~~Ik~~~~ 83 (309)
T TIGR00423 7 RNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDI---EYYEELFRAIKQEFP 83 (309)
T ss_pred eeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCH---HHHHHHHHHHHHHCC
Confidence 36789999999999999875444 3457899999999999998999999999754332221 357889999877544
Q ss_pred CCCCceEEEeec-------CCCChhhhHHHHHHHHhCCCCCCeEE-EccCCcCHHHHHHh-CCCCCcCc
Q 019874 272 PDGSTMLRIGMT-------NPPFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSVS-QKIVPTKS 331 (334)
Q Consensus 272 ~~~~~~ir~~~~-------~p~~i~~~l~~l~~l~~~~~g~~~l~-igiQSgsd~vLk~M-~R~~t~e~ 331 (334)
.+.|..++-. .....+++. +..|++ +|+..++ .|+|++++++++.+ +++.+.++
T Consensus 84 --~i~~~~~s~~e~~~~~~~~g~~~~e~--l~~Lke--AGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~ 146 (309)
T TIGR00423 84 --DVHIHAFSPMEVYFLAKNEGLSIEEV--LKRLKK--AGLDSMPGTGAEILDDSVRRKICPNKLSSDE 146 (309)
T ss_pred --CceEEecCHHHHHHHHHHcCCCHHHH--HHHHHH--cCCCcCCCCcchhcCHHHHHhhCCCCCCHHH
Confidence 3344322110 001112333 677765 5888885 79999999999988 66666554
No 60
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.23 E-value=8e-11 Score=111.54 Aligned_cols=126 Identities=14% Similarity=0.172 Sum_probs=87.5
Q ss_pred eeeec-cCCCCCCCccccccccC---C-ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHH
Q 019874 194 EILPI-NVGCLGACTYCKTKHAR---G-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (334)
Q Consensus 194 ~~v~i-srGC~~~CsfC~ip~~r---G-~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (334)
+.+.+ ++||+++|.||..+... + ..+.+++++|++|++.+.+.|++++.|++...... ...+.++++.|.+
T Consensus 30 ~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~----~~~~~~~~~~i~~ 105 (296)
T TIGR00433 30 TIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPK----DREFMEYVEAMVQ 105 (296)
T ss_pred EEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCC----hHHHHHHHHHHHH
Confidence 34554 99999999999987653 2 35779999999999999889999987754221111 1233456665543
Q ss_pred hCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
.+...++.+ ..++..++++. +..|++ +|+..+.+++| +++++++.++++++.+++
T Consensus 106 ~~~~~~i~~----~~~~g~~~~e~--l~~Lk~--aG~~~v~i~~E-~~~~~~~~i~~~~s~~~~ 160 (296)
T TIGR00433 106 IVEEMGLKT----CATLGLLDPEQ--AKRLKD--AGLDYYNHNLD-TSQEFYSNIISTHTYDDR 160 (296)
T ss_pred HHHhCCCeE----EecCCCCCHHH--HHHHHH--cCCCEEEEccc-CCHHHHhhccCCCCHHHH
Confidence 221113332 23445566655 777775 58999999999 899999999998887653
No 61
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.19 E-value=6.7e-11 Score=115.58 Aligned_cols=123 Identities=14% Similarity=0.219 Sum_probs=87.5
Q ss_pred CCCCCccccccccCCc--cccCCHHHHHHHHHHHHH-CC---CcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCC
Q 019874 202 CLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA-DG---VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275 (334)
Q Consensus 202 C~~~CsfC~ip~~rG~--~rsr~~e~Iv~Ei~~l~~-~G---~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~ 275 (334)
|+.+|.||........ ....-++.+++|++...+ .| ++.|.|.|.+.+.... ..+.+|++.|.+.+.....
T Consensus 10 C~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~---~~l~~ll~~i~~~~~~~~~ 86 (360)
T TIGR00539 10 CENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSV---EAFERLFESIYQHASLSDD 86 (360)
T ss_pred CcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCH---HHHHHHHHHHHHhCCCCCC
Confidence 9999999997654221 122356778888876543 34 6788887766554322 3577788887654421122
Q ss_pred ceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 276 ~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
..+.+ .+||..++++. |..|++ .|+.+++||+||+++++|+.|+|+++.+++
T Consensus 87 ~eiti-e~np~~lt~e~--l~~l~~--~Gv~risiGvqS~~~~~l~~lgR~~~~~~~ 138 (360)
T TIGR00539 87 CEITT-EANPELITAEW--CKGLKG--AGINRLSLGVQSFRDDKLLFLGRQHSAKNI 138 (360)
T ss_pred CEEEE-EeCCCCCCHHH--HHHHHH--cCCCEEEEecccCChHHHHHhCCCCCHHHH
Confidence 34554 47999999866 777776 489999999999999999999999998765
No 62
>PRK08445 hypothetical protein; Provisional
Probab=99.19 E-value=4e-11 Score=116.69 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=91.9
Q ss_pred eeeccCCCCCCCccccccccCC--ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCC
Q 019874 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (334)
Q Consensus 195 ~v~isrGC~~~CsfC~ip~~rG--~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (334)
.|.++.||+++|.||......+ .....++|+|++.++...+.|.++|++.|.+...+.. ..+.++++.|.+..|
T Consensus 45 ~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~---e~~~~l~~~Ik~~~p- 120 (348)
T PRK08445 45 NINYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLAIGGTQILFQGGVHPKLKI---EWYENLVSHIAQKYP- 120 (348)
T ss_pred ccccccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 4788999999999999875432 2234699999999999999999999998754433322 357889999988766
Q ss_pred CCCceEEEeecCCCCh------h-hhHHHHHHHHhCCCCCCeE-EEccCCcCHHHHHHh-CCCCCcCc
Q 019874 273 DGSTMLRIGMTNPPFI------L-EHLKEIAEVLRHPCVYSFL-HVPVQSGSDAVLSVS-QKIVPTKS 331 (334)
Q Consensus 273 ~~~~~ir~~~~~p~~i------~-~~l~~l~~l~~~~~g~~~l-~igiQSgsd~vLk~M-~R~~t~e~ 331 (334)
.+.+..++.....++ + + ++|..|++ +|+..+ |+|+||+++++++.+ +++.|.++
T Consensus 121 -~i~~~a~s~~ei~~~a~~~~~~~~--e~L~~Lke--AGl~~~~g~glE~~~d~v~~~~~pk~~t~~~ 183 (348)
T PRK08445 121 -TITIHGFSAVEIDYIAKISKISIK--EVLERLQA--KGLSSIPGAGAEILSDRVRDIIAPKKLDSDR 183 (348)
T ss_pred -CcEEEEccHHHHHHHHHHhCCCHH--HHHHHHHH--cCCCCCCCCceeeCCHHHHHhhCCCCCCHHH
Confidence 343332221111211 1 3 34677775 588887 599999999999999 77887765
No 63
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.17 E-value=2e-10 Score=113.07 Aligned_cols=130 Identities=18% Similarity=0.286 Sum_probs=92.4
Q ss_pred eeeeccCCCCCCCccccccccC--Ccc-ccCCHHHHHHHHHHHHH----CCCcEEEEeeccCCCCCCCCCCCHHHHHHHH
Q 019874 194 EILPINVGCLGACTYCKTKHAR--GHL-GSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (334)
Q Consensus 194 ~~v~isrGC~~~CsfC~ip~~r--G~~-rsr~~e~Iv~Ei~~l~~----~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l 266 (334)
.||-|-. |+.+|.||...... +.. ..+-++.+++|++.... .+++.|.|.|.+.+.... ..+.+|++.+
T Consensus 9 lYiHiPF-C~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~~---~~l~~ll~~l 84 (378)
T PRK05660 9 LYIHIPW-CVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSA---EAIQRLLDGV 84 (378)
T ss_pred EEEEeCC-ccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCCH---HHHHHHHHHH
Confidence 3444444 99999999976432 221 12236778888875332 367888888766654422 4678888888
Q ss_pred HHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 267 ~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
.+.++......+.+ .+||..++.+. |..|++ .|+..|.||+||+++++|+.|+|+++.+++
T Consensus 85 ~~~~~~~~~~eit~-e~np~~l~~e~--l~~Lk~--~Gv~risiGvqS~~~~~L~~l~r~~~~~~~ 145 (378)
T PRK05660 85 RARLPFAPDAEITM-EANPGTVEADR--FVGYQR--AGVNRISIGVQSFSEEKLKRLGRIHGPDEA 145 (378)
T ss_pred HHhCCCCCCcEEEE-EeCcCcCCHHH--HHHHHH--cCCCEEEeccCcCCHHHHHHhCCCCCHHHH
Confidence 77654222235554 57999998865 777775 589999999999999999999999998865
No 64
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.17 E-value=1.1e-10 Score=115.18 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=90.6
Q ss_pred eeeeeccCCCCCCCccccccccCCc--cccCCHHHHHHHHHHHHH----CCCcEEEEeeccCCCCCCCCCCCHHHHHHHH
Q 019874 193 VEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG~--~rsr~~e~Iv~Ei~~l~~----~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l 266 (334)
+..|+. |..+|.||........ ....-++.+.+|++...+ ..++.|.|.|.+.+.... ..+.+|++.+
T Consensus 15 YiHiPF---C~~~C~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~---~~l~~ll~~i 88 (390)
T PRK06582 15 YIHWPF---CLSKCPYCDFNSHVASTIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMNP---VIVEGIINKI 88 (390)
T ss_pred EEEeCC---CcCcCCCCCCeeccCCCCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCCH---HHHHHHHHHH
Confidence 344555 9999999997654321 123457788889987654 236677776655543321 3566778877
Q ss_pred HHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 267 ~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
.+.++......+.+ .+||..++.+. |..|++ .|++.|+||+||+++++|+.|+|+++.+++
T Consensus 89 ~~~~~~~~~~eiti-E~nP~~~~~e~--l~~l~~--~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~ 149 (390)
T PRK06582 89 SNLAIIDNQTEITL-ETNPTSFETEK--FKAFKL--AGINRVSIGVQSLKEDDLKKLGRTHDCMQA 149 (390)
T ss_pred HHhCCCCCCCEEEE-EeCCCcCCHHH--HHHHHH--CCCCEEEEECCcCCHHHHHHcCCCCCHHHH
Confidence 65332113445665 57999998755 777775 589999999999999999999999998765
No 65
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.15 E-value=3.5e-10 Score=98.25 Aligned_cols=123 Identities=24% Similarity=0.331 Sum_probs=88.9
Q ss_pred eeccCCCCCCCccccccccCCccccCCH--HHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCC
Q 019874 196 LPINVGCLGACTYCKTKHARGHLGSYTV--ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (334)
Q Consensus 196 v~isrGC~~~CsfC~ip~~rG~~rsr~~--e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~ 273 (334)
+.+++||+++|+||..+...+.....+. +.+.+.+......+.+.+.|+|.+...+ ..+.++++.+.+..+
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~~~-----~~~~~~i~~~~~~~~-- 73 (204)
T cd01335 1 LELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLY-----PELAELLRRLKKELP-- 73 (204)
T ss_pred CccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCCcc-----HhHHHHHHHHHhhCC--
Confidence 4678999999999999877665444443 3566666666667889999988766543 257888888876432
Q ss_pred CCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhC-CCCCcCc
Q 019874 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQ-KIVPTKS 331 (334)
Q Consensus 274 ~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~-R~~t~e~ 331 (334)
...+++ .+++..++++. +..|++ .|+..+.++++|+++.+++.++ ++.+.++
T Consensus 74 -~~~~~i-~T~~~~~~~~~--~~~l~~--~g~~~i~i~le~~~~~~~~~~~~~~~~~~~ 126 (204)
T cd01335 74 -GFEISI-ETNGTLLTEEL--LKELKE--LGLDGVGVSLDSGDEEVADKIRGSGESFKE 126 (204)
T ss_pred -CceEEE-EcCcccCCHHH--HHHHHh--CCCceEEEEcccCCHHHHHHHhcCCcCHHH
Confidence 346666 46776656544 666765 3789999999999999999998 6555543
No 66
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.12 E-value=2e-10 Score=112.71 Aligned_cols=119 Identities=14% Similarity=0.212 Sum_probs=81.4
Q ss_pred CCCCCccccccccCCc--cccCCHHHHHHH-HHHHHH----CCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCC
Q 019874 202 CLGACTYCKTKHARGH--LGSYTVESLVGR-VRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274 (334)
Q Consensus 202 C~~~CsfC~ip~~rG~--~rsr~~e~Iv~E-i~~l~~----~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~ 274 (334)
|+++|.||........ ....-++.+++| ++.... ..++.|.|.|.+.+... ...+.+|++.|... .
T Consensus 16 C~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~---~~~l~~ll~~i~~~----~ 88 (370)
T PRK06294 16 CTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVP---PALIQDILKTLEAP----H 88 (370)
T ss_pred ccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCC---HHHHHHHHHHHHhC----C
Confidence 9999999986544211 112235667777 554332 23455666554443221 13577788877542 2
Q ss_pred CceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 275 ~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
...+.+ .++|..++++. |..|++ .|+.+++||+||+++++|+.|+|+++.+++
T Consensus 89 ~~eit~-E~~P~~~~~~~--l~~l~~--~G~nrislGvQS~~~~~L~~l~R~~~~~~~ 141 (370)
T PRK06294 89 ATEITL-EANPENLSESY--IRALAL--TGINRISIGVQTFDDPLLKLLGRTHSSSKA 141 (370)
T ss_pred CCeEEE-EeCCCCCCHHH--HHHHHH--CCCCEEEEccccCCHHHHHHcCCCCCHHHH
Confidence 456776 68999998866 777775 489999999999999999999999998765
No 67
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.10 E-value=3.1e-10 Score=110.22 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=90.2
Q ss_pred eeeccCCCCCCCccccccccCC--ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCC
Q 019874 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (334)
Q Consensus 195 ~v~isrGC~~~CsfC~ip~~rG--~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (334)
.|.++.||+++|.||......+ +...+++|+|+++++.+.+.|+++|.|+|.+...+.. ..+.++++.|.+..+
T Consensus 42 ~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~---~~~~~i~~~Ik~~~~- 117 (343)
T TIGR03551 42 NINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDG---DFYLDILRAVKEEVP- 117 (343)
T ss_pred ccccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 5778999999999999865444 2234899999999999999999999999754332321 356788999877554
Q ss_pred CCCceEEEe-------ecCCCChhhhHHHHHHHHhCCCCCCeEE-EccCCcCHHHHHHhCCCC-CcC
Q 019874 273 DGSTMLRIG-------MTNPPFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSVSQKIV-PTK 330 (334)
Q Consensus 273 ~~~~~ir~~-------~~~p~~i~~~l~~l~~l~~~~~g~~~l~-igiQSgsd~vLk~M~R~~-t~e 330 (334)
++.|..++ ..+....+++. +..|++ +|+..++ .+.|++++++++.+.++. +.+
T Consensus 118 -~i~~~~~t~~ei~~~~~~~g~~~~e~--l~~Lke--AGl~~i~~~~~E~~~~~v~~~i~~~~~~~~ 179 (343)
T TIGR03551 118 -GMHIHAFSPMEVYYGARNSGLSVEEA--LKRLKE--AGLDSMPGTAAEILDDEVRKVICPDKLSTA 179 (343)
T ss_pred -CceEEecCHHHHHHHHHHcCCCHHHH--HHHHHH--hCcccccCcchhhcCHHHHHhcCCCCCCHH
Confidence 44443221 01222334433 777776 5899888 478999999999998763 554
No 68
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.06 E-value=4.8e-10 Score=108.03 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=89.3
Q ss_pred eeeeeccCCCCCCCccccccccCCc--cccCCHHHHHHHHHHHHHCCCcEEEEee-ccCCC-----------CCCCC-CC
Q 019874 193 VEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSS-EDTGA-----------YGRDI-GV 257 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG~--~rsr~~e~Iv~Ei~~l~~~G~kei~l~~-~d~~~-----------yg~d~-~~ 257 (334)
..+|++++||+++|+||.++..+|. .+.+++|+|+++++.+.+.|++++.|++ .+... ||.+. ..
T Consensus 5 n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~ 84 (322)
T TIGR03550 5 NVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLE 84 (322)
T ss_pred eEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHH
Confidence 3578899999999999999888776 3489999999999999999999999884 22110 11110 02
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcC
Q 019874 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTK 330 (334)
Q Consensus 258 ~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e 330 (334)
.+.++++.+.++. +. +.++++..++++. +..|++. |. .+++.+||+++.+++.|++.+++.
T Consensus 85 ~~~~~~~~i~~e~---~~----~~~~~~g~lt~e~--l~~Lk~a--G~-~~~~~~Et~~~~l~~~~~~~~~p~ 145 (322)
T TIGR03550 85 YLRELCELALEET---GL----LPHTNPGVMSRDE--LARLKPV--NA-SMGLMLETTSERLCKGEAHYGSPG 145 (322)
T ss_pred HHHHHHHHHHHhc---CC----ccccCCCCCCHHH--HHHHHhh--CC-CCCcchhhhccccccccccCCCCC
Confidence 3555666665321 11 2346777777755 7777753 44 468999999999998888777653
No 69
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.01 E-value=8e-10 Score=107.73 Aligned_cols=122 Identities=15% Similarity=0.175 Sum_probs=86.9
Q ss_pred eeeeccCCCCCCCccccccccCC---ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhC
Q 019874 194 EILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (334)
Q Consensus 194 ~~v~isrGC~~~CsfC~ip~~rG---~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (334)
.+|..+.||+++|+||......+ .++ .++|+|+++++...+.|+++|.|++.+-..+. -..+.++++.|.+..
T Consensus 50 ~~in~Tn~C~~~C~FCa~~~~~~~~~~y~-l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~---~~~~~e~i~~Ik~~~ 125 (351)
T TIGR03700 50 RHLNYTNICVNGCAFCAFQRERGEPGAYA-MSLEEIVARVKEAYAPGATEVHIVGGLHPNLP---FEWYLDMIRTLKEAY 125 (351)
T ss_pred CCcccccccccCCccCceeCCCCCcccCC-CCHHHHHHHHHHHHHCCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHC
Confidence 35778999999999999875544 233 79999999999999999999999864322111 135778888887765
Q ss_pred CCCCCceEEEeecCCC----------ChhhhHHHHHHHHhCCCCCCeEE-EccCCcCHHHHHHhCCCCC
Q 019874 271 PPDGSTMLRIGMTNPP----------FILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSVSQKIVP 328 (334)
Q Consensus 271 ~~~~~~~ir~~~~~p~----------~i~~~l~~l~~l~~~~~g~~~l~-igiQSgsd~vLk~M~R~~t 328 (334)
| +. .+..+.|. ..+++. +..|++ +|+..++ .|+||+++++++.+.++.+
T Consensus 126 p--~i---~i~~~~~~ei~~~~~~~g~~~~e~--l~~Lke--AGld~~~~~g~E~~~~~v~~~i~~~~~ 185 (351)
T TIGR03700 126 P--DL---HVKAFTAVEIHHFSKISGLPTEEV--LDELKE--AGLDSMPGGGAEIFAEEVRQQICPEKI 185 (351)
T ss_pred C--Cc---eEEeCCHHHHHHHHHHcCCCHHHH--HHHHHH--cCCCcCCCCcccccCHHHHhhcCCCCC
Confidence 5 33 23332221 123333 677775 5888776 7999999999999988643
No 70
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.01 E-value=1.3e-09 Score=110.91 Aligned_cols=125 Identities=19% Similarity=0.243 Sum_probs=89.6
Q ss_pred CCCCC-CCccccc-------c---------ccCC-ccccCCHHHHHHHHHHHHHCC--C--cEEEEeeccCCCCCCCCCC
Q 019874 200 VGCLG-ACTYCKT-------K---------HARG-HLGSYTVESLVGRVRTVIADG--V--KEVWLSSEDTGAYGRDIGV 257 (334)
Q Consensus 200 rGC~~-~CsfC~i-------p---------~~rG-~~rsr~~e~Iv~Ei~~l~~~G--~--kei~l~~~d~~~yg~d~~~ 257 (334)
-=||| .|.||-- | ..|+ +.+..|..++.++++++...| + -|+.|.|.+++++..+
T Consensus 76 ~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~--- 152 (522)
T TIGR01211 76 HRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLD--- 152 (522)
T ss_pred ccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHH---
Confidence 44995 7999963 2 1233 356789999999999999866 3 3558889898877543
Q ss_pred CHHHHHHHHHHhCCC----------------------CCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCc
Q 019874 258 NLPILLNAIVAELPP----------------------DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 315 (334)
Q Consensus 258 ~l~~Ll~~l~~~i~~----------------------~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSg 315 (334)
.+..+++.+...++. .....+++ .++|+.++++. |..|++ .|+..+.||+||+
T Consensus 153 y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgiti-EtRPD~i~~e~--L~~L~~--~G~~rVslGVQS~ 227 (522)
T TIGR01211 153 YQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTI-ETRPDYCREEH--IDRMLK--LGATRVELGVQTI 227 (522)
T ss_pred HHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEE-EEcCCcCCHHH--HHHHHH--cCCCEEEEECccC
Confidence 334444444333320 01223444 47999999866 777776 4899999999999
Q ss_pred CHHHHHHhCCCCCcCcc
Q 019874 316 SDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 316 sd~vLk~M~R~~t~e~v 332 (334)
+|++|+.|||++|.+++
T Consensus 228 ~d~VL~~inRght~~~v 244 (522)
T TIGR01211 228 YNDILERTKRGHTVRDV 244 (522)
T ss_pred CHHHHHHhCCCCCHHHH
Confidence 99999999999998875
No 71
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=98.96 E-value=7.2e-09 Score=99.94 Aligned_cols=126 Identities=21% Similarity=0.229 Sum_probs=95.4
Q ss_pred eeeeeccCCCCCCCcccccccc---CCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHh
Q 019874 193 VEILPINVGCLGACTYCKTKHA---RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~---rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (334)
+..|.++.+||.+|.||..+.. .++.+..+++++.+.++.+.+.|++.|.|+|.+...+ .++.++++.+.+
T Consensus 18 ~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~-----~~l~~li~~i~~- 91 (331)
T PRK00164 18 YLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLR-----KDLEDIIAALAA- 91 (331)
T ss_pred eEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCc-----cCHHHHHHHHHh-
Confidence 4568899999999999987542 2345678999999999998889999999998665433 468899998865
Q ss_pred CCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
.+ +...+.+ ++|...+++. +..+++ +++..+.|+++|.+++..+.++++.+.+++
T Consensus 92 ~~--~~~~i~i-tTNG~ll~~~---~~~L~~--agl~~i~ISlds~~~e~~~~i~~~~~~~~v 146 (331)
T PRK00164 92 LP--GIRDLAL-TTNGYLLARR---AAALKD--AGLDRVNVSLDSLDPERFKAITGRDRLDQV 146 (331)
T ss_pred cC--CCceEEE-EcCchhHHHH---HHHHHH--cCCCEEEEEeccCCHHHhccCCCCCCHHHH
Confidence 32 3445665 5676555443 455554 478899999999999999999988776544
No 72
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=98.96 E-value=1.1e-09 Score=106.07 Aligned_cols=125 Identities=18% Similarity=0.232 Sum_probs=84.9
Q ss_pred eeeccCCCCCCCccccccccCCc--cccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCC
Q 019874 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (334)
Q Consensus 195 ~v~isrGC~~~CsfC~ip~~rG~--~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (334)
.+.++.||+++|+||......+. ...+++++|+++++.+.+.|+++|.|+|....... ...+.++++.|.+..+
T Consensus 44 ~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~---~~~~~~li~~Ik~~~~- 119 (340)
T TIGR03699 44 NINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVAYGGTQILLQGGVNPDLG---LDYYEDLFRAIKARFP- 119 (340)
T ss_pred ccccchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCC-
Confidence 46679999999999986544443 34689999999999999999999999875322111 1246678888876433
Q ss_pred CCCceEEEeecCCC---------Ch-hhhHHHHHHHHhCCCCCCeEE-EccCCcCHHHHHHhCC-CCCcCc
Q 019874 273 DGSTMLRIGMTNPP---------FI-LEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSVSQK-IVPTKS 331 (334)
Q Consensus 273 ~~~~~ir~~~~~p~---------~i-~~~l~~l~~l~~~~~g~~~l~-igiQSgsd~vLk~M~R-~~t~e~ 331 (334)
+..|. ...|. .+ +++. +..|++ +|+.+++ .|+|+.++++++.+.+ +.|.++
T Consensus 120 -~i~~~---~~s~~ei~~~~~~~g~~~~e~--l~~Lk~--aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~ 182 (340)
T TIGR03699 120 -HIHIH---SFSPVEIVYIAKKEGLSLREV--LERLKE--AGLDSIPGGGAEILSDRVRKIISPKKISSEE 182 (340)
T ss_pred -CcCCC---CCCHHHHHHHhccCCCCHHHH--HHHHHH--cCCCcCCCCcccccCHHHHHhhCCCCCCHHH
Confidence 23321 11111 11 1333 666765 5788887 5899999999999854 455543
No 73
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=98.93 E-value=2.8e-09 Score=104.63 Aligned_cols=135 Identities=20% Similarity=0.254 Sum_probs=90.8
Q ss_pred eeeeeeccCCCCC-CCcccccc------cc---------CCc-cccCCHHHHHHHHHHHHHCCC---c-EEEEeeccCCC
Q 019874 192 FVEILPINVGCLG-ACTYCKTK------HA---------RGH-LGSYTVESLVGRVRTVIADGV---K-EVWLSSEDTGA 250 (334)
Q Consensus 192 ~~~~v~isrGC~~-~CsfC~ip------~~---------rG~-~rsr~~e~Iv~Ei~~l~~~G~---k-ei~l~~~d~~~ 250 (334)
.++.+.--.|||| +|.||--. .. |+. .+.-|-.++...+++|.+.|. + |+.|.|..|++
T Consensus 67 VVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta 146 (515)
T COG1243 67 VVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTA 146 (515)
T ss_pred EEEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccccC
Confidence 3444555699998 99999754 21 221 344577888899999988764 3 77788887775
Q ss_pred CCCCCCCCH-HHHHHHHH----------HhCCCCCC---ceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcC
Q 019874 251 YGRDIGVNL-PILLNAIV----------AELPPDGS---TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316 (334)
Q Consensus 251 yg~d~~~~l-~~Ll~~l~----------~~i~~~~~---~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgs 316 (334)
-..+-.++| ...++++. . ...... .-+++ .++|++++++- |..|++. |+..+.||+||..
T Consensus 147 ~~~~yqe~Fi~~~~~amn~f~~~le~a~~-~ne~~~~r~vgiti-ETRPD~~~ee~--ld~mlky--G~TrVELGVQSiy 220 (515)
T COG1243 147 LSLEYQEWFLKVALKAMNDFGYDLEEAQR-KNETAELRCVGITI-ETRPDYIDEEH--LDQMLKY--GVTRVELGVQSIY 220 (515)
T ss_pred CCHHHHHHHHHHHHHhhhccchhHHHHHH-hhcccccceeEEEE-ecCccccCHHH--HHHHHhc--CCcEEEEeeeeHH
Confidence 432211112 22333332 1 110011 23666 68999998855 7888864 8999999999999
Q ss_pred HHHHHHhCCCCCcCcc
Q 019874 317 DAVLSVSQKIVPTKSV 332 (334)
Q Consensus 317 d~vLk~M~R~~t~e~v 332 (334)
|+||++++||||++++
T Consensus 221 d~Vl~~~~RGHtvedv 236 (515)
T COG1243 221 DDVLERTKRGHTVEDV 236 (515)
T ss_pred HHHHHHhcCCccHHHH
Confidence 9999999999999876
No 74
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=98.92 E-value=1.2e-08 Score=98.52 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=93.7
Q ss_pred eeeeeccCCCCCCCcccccccc--CCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhC
Q 019874 193 VEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~--rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (334)
+..|.++.+||.+|.||..... ..+....+.+++.+-++.+.+.|++.|.|+|.....+ .++.++++.+.+ .
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr-----~dl~~li~~i~~-~ 88 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVR-----RGCDQLVARLGK-L 88 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCCcc-----ccHHHHHHHHHh-C
Confidence 4467889999999999975421 1233467899999988888889999999998554432 468899998865 4
Q ss_pred CCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 271 ~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+ +...+.+ .+|...+++. +..|++ +|...+.|+++|.++++.+.++|+.+.+++
T Consensus 89 ~--~l~~i~i-tTNG~ll~~~---~~~L~~--aGl~~v~ISlDs~~~e~~~~i~~~g~~~~v 142 (329)
T PRK13361 89 P--GLEELSL-TTNGSRLARF---AAELAD--AGLKRLNISLDTLRPELFAALTRNGRLERV 142 (329)
T ss_pred C--CCceEEE-EeChhHHHHH---HHHHHH--cCCCeEEEEeccCCHHHhhhhcCCCCHHHH
Confidence 3 4446666 5777666543 355554 488999999999999999999887765543
No 75
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.90 E-value=1.1e-08 Score=100.46 Aligned_cols=124 Identities=15% Similarity=0.138 Sum_probs=86.4
Q ss_pred eeeeccCCCCCCCccccccccCC-ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCC
Q 019874 194 EILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (334)
Q Consensus 194 ~~v~isrGC~~~CsfC~ip~~rG-~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (334)
+.+.++.+|+++|.||..+...+ ..+..++++|+++++.+.+.|+++|.|+|...... .+ -..+.++++.|.+.+|
T Consensus 76 ~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~-~~-~e~l~~~i~~Ik~~~p- 152 (371)
T PRK09240 76 TPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKLGFEHILLLTGEHEAK-VG-VDYIRRALPIAREYFS- 152 (371)
T ss_pred eceEEcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-CC-HHHHHHHHHHHHHhCC-
Confidence 44667999999999999864433 23568999999999999999999999876332111 11 1345666666655433
Q ss_pred CCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhC---CCCCcCc
Q 019874 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQ---KIVPTKS 331 (334)
Q Consensus 273 ~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~---R~~t~e~ 331 (334)
.+.+ ...| ++.+ ++..|++ +|+..+++++||.+++.++.+. |+++.++
T Consensus 153 ----~i~i-~~g~--lt~e--~l~~Lk~--aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~ 203 (371)
T PRK09240 153 ----SVSI-EVQP--LSEE--EYAELVE--LGLDGVTVYQETYNPATYAKHHLRGPKRDFEY 203 (371)
T ss_pred ----Ccee-ccCC--CCHH--HHHHHHH--cCCCEEEEEEecCCHHHHHHhCcCCCCCCHHH
Confidence 2222 2333 4443 3677775 5899999999999999999995 5666654
No 76
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=98.83 E-value=2.4e-08 Score=96.30 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=87.7
Q ss_pred cccceeeeeeccCCCCCCCccccccccCCc--cccCCHHHHHHHHHHHHHC-CCcEEEEeeccCCCCCCCCCCCHHHHHH
Q 019874 188 RRNKFVEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (334)
Q Consensus 188 ~~~~~~~~v~isrGC~~~CsfC~ip~~rG~--~rsr~~e~Iv~Ei~~l~~~-G~kei~l~~~d~~~yg~d~~~~l~~Ll~ 264 (334)
++.+..+.+.+++||+.+|.||..+.+.|. ....+.+++.+-++.+.+. |+++|.|+|.|...+.. ..|.+|++
T Consensus 84 hkyp~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~---~~L~~ll~ 160 (321)
T TIGR03822 84 HRYPDRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLSP---RRLGDIMA 160 (321)
T ss_pred cCCCCEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCH---HHHHHHHH
Confidence 345667789999999999999998765553 2344667777777777654 89999999977664421 36889999
Q ss_pred HHHHhCCCCCCceEEEee----cCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHH
Q 019874 265 AIVAELPPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA 318 (334)
Q Consensus 265 ~l~~~i~~~~~~~ir~~~----~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~ 318 (334)
.+.+ ++ .+..+|+++ .+|..+++++ +..|++. ++ .+.|++++..++
T Consensus 161 ~l~~-i~--~v~~iri~Tr~~v~~p~rit~el--l~~L~~~--g~-~v~i~l~~~h~~ 210 (321)
T TIGR03822 161 RLAA-ID--HVKIVRFHTRVPVADPARVTPAL--IAALKTS--GK-TVYVALHANHAR 210 (321)
T ss_pred HHHh-CC--CccEEEEeCCCcccChhhcCHHH--HHHHHHc--CC-cEEEEecCCChh
Confidence 9975 65 567788875 3677788877 6666654 44 478999996543
No 77
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=98.82 E-value=4e-08 Score=95.14 Aligned_cols=126 Identities=18% Similarity=0.234 Sum_probs=85.0
Q ss_pred cccceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHH-CCCcEEEEeeccCCCCCCCCCCCHHHHHHHH
Q 019874 188 RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (334)
Q Consensus 188 ~~~~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~-~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l 266 (334)
++.+..+.+.++.||+.+|+||..+.+.+.....+.+++.+.++.+.+ .|+++|.|+|.|..... | ..|.+|++.+
T Consensus 109 hky~~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~-d--~~L~~ll~~L 185 (331)
T TIGR00238 109 HRYVNRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAK-D--HELEWLLKRL 185 (331)
T ss_pred eecCCcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCC-H--HHHHHHHHHH
Confidence 344566789999999999999998655443233346777777777665 48999999997765432 1 2488999998
Q ss_pred HHhCCCCCCceEEEeecC----CCChhhhHHHHHHHHhCCCCCCeEEEccCCcC----HHHHHHh
Q 019874 267 VAELPPDGSTMLRIGMTN----PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS----DAVLSVS 323 (334)
Q Consensus 267 ~~~i~~~~~~~ir~~~~~----p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgs----d~vLk~M 323 (334)
.+ ++ .+.++|+++-. |..+++++ +..|.+. +++.+.+..-.+. +++.+++
T Consensus 186 ~~-i~--~~~~IRi~tr~~~~~P~rit~el--~~~L~~~--~~~~~~vsh~nh~~Ei~~~~~~ai 243 (331)
T TIGR00238 186 EE-IP--HLVRLRIGTRLPVVIPQRITDEL--CELLASF--ELQLMLVTHINHCNEITEEFAEAM 243 (331)
T ss_pred Hh-cC--CccEEEeecCCCccCchhcCHHH--HHHHHhc--CCcEEEEccCCChHhCCHHHHHHH
Confidence 75 66 67889997643 45577766 5555543 5666666644443 4444444
No 78
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=98.82 E-value=2.9e-08 Score=97.40 Aligned_cols=125 Identities=14% Similarity=0.172 Sum_probs=84.6
Q ss_pred eeeeeccCCCCCCCccccccccCC-ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCC
Q 019874 193 VEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG-~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (334)
.+.+.++.+|+++|.||......+ .....++|+|+++++.+.+.|+++|.|+|...-.+ .+ -..+.++++.|.+..|
T Consensus 74 ~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~-~~-~e~l~eii~~Ik~~~p 151 (366)
T TIGR02351 74 FTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKKSGFKEILLVTGESEKA-AG-VEYIAEAIKLAREYFS 151 (366)
T ss_pred EeeeeECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-CC-HHHHHHHHHHHHHhCC
Confidence 344568999999999998854322 12346899999999999999999999885321111 00 1246667777755433
Q ss_pred CCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhC---CCCCcCc
Q 019874 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQ---KIVPTKS 331 (334)
Q Consensus 272 ~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~---R~~t~e~ 331 (334)
.+.+ .+.| ++. +++..|++ +|+..+++++||.+++.++.|. +.++.++
T Consensus 152 -----~i~I-ei~~--lt~--e~~~~Lk~--aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~ 202 (366)
T TIGR02351 152 -----SLAI-EVQP--LNE--EEYKKLVE--AGLDGVTVYQETYNEKKYKKHHLAGKKKDFRY 202 (366)
T ss_pred -----cccc-cccc--CCH--HHHHHHHH--cCCCEEEEEeecCCHHHHHhcCcCCCCCCHHH
Confidence 1222 1233 454 33677775 5899999999999999999987 5555543
No 79
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=98.81 E-value=5.6e-08 Score=93.95 Aligned_cols=125 Identities=18% Similarity=0.230 Sum_probs=93.0
Q ss_pred eeeeeccCCCCCCCccccccccC----CccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHH
Q 019874 193 VEILPINVGCLGACTYCKTKHAR----GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~r----G~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (334)
+..|.++.+|+.+|.||...... .+....+.+++.+.++.+.+.|+++|.|+|.+...+ .++.++++.+.+
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~-----~~l~~li~~i~~ 85 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLR-----KDLVELVARLAA 85 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcccccc-----CCHHHHHHHHHh
Confidence 45678899999999999875411 124567899999999999889999999998665432 468899998865
Q ss_pred hCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCC-CCCcCc
Q 019874 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK-IVPTKS 331 (334)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R-~~t~e~ 331 (334)
.+ +...+.+ ++|...+.+. +..+++ ++...+.|+++|.+++..+.+.| +.+.++
T Consensus 86 -~~--gi~~v~i-tTNG~ll~~~---~~~L~~--~gl~~v~ISld~~~~~~~~~i~~~~~~~~~ 140 (334)
T TIGR02666 86 -LP--GIEDIAL-TTNGLLLARH---AKDLKE--AGLKRVNVSLDSLDPERFAKITRRGGRLEQ 140 (334)
T ss_pred -cC--CCCeEEE-EeCchhHHHH---HHHHHH--cCCCeEEEecccCCHHHhheeCCCCCCHHH
Confidence 44 5546776 4677655543 455654 47899999999999999999875 445443
No 80
>PRK08508 biotin synthase; Provisional
Probab=98.81 E-value=2.3e-08 Score=94.57 Aligned_cols=122 Identities=13% Similarity=0.154 Sum_probs=82.6
Q ss_pred ccCCCCCCCccccccccC-C---ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCC
Q 019874 198 INVGCLGACTYCKTKHAR-G---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (334)
Q Consensus 198 isrGC~~~CsfC~ip~~r-G---~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~ 273 (334)
.+.||+++|.||..+... + .++.+++|+|+++++...+.|+.+|.|++.-.+ +....-+.+.++++.|.+..|
T Consensus 13 ~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~-~~~~~~e~~~ei~~~ik~~~p-- 89 (279)
T PRK08508 13 SSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRG-LDDKKLEYVAEAAKAVKKEVP-- 89 (279)
T ss_pred ccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCC-CCcccHHHHHHHHHHHHhhCC--
Confidence 479999999999987643 2 245579999999999999999999988643222 111101345677777765433
Q ss_pred CCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCc
Q 019874 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKS 331 (334)
Q Consensus 274 ~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~ 331 (334)
+..+ .. + ...++++. +..|++ +|+..+++++|| ++++++.+..+++.++
T Consensus 90 ~l~i-~~-s--~G~~~~e~--l~~Lk~--aGld~~~~~lEt-~~~~~~~i~~~~~~~~ 138 (279)
T PRK08508 90 GLHL-IA-C--NGTASVEQ--LKELKK--AGIFSYNHNLET-SKEFFPKICTTHTWEE 138 (279)
T ss_pred CcEE-Ee-c--CCCCCHHH--HHHHHH--cCCCEEcccccc-hHHHhcCCCCCCCHHH
Confidence 3322 11 1 12234443 677775 589999999999 4788888877777665
No 81
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=98.78 E-value=7.3e-08 Score=91.73 Aligned_cols=124 Identities=13% Similarity=0.122 Sum_probs=91.5
Q ss_pred eeeeeccCCCCCCCccccccccCCc-cccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCC
Q 019874 193 VEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG~-~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (334)
+..|.++.+||.+|.||..+..... .+..+.|++.+.++.+...|++.|.|+|.+...+ ..+.++++.+.+ .
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~-----~~l~~iv~~l~~-~- 83 (302)
T TIGR02668 11 SLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEPLLR-----KDLIEIIRRIKD-Y- 83 (302)
T ss_pred eEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccccc-----cCHHHHHHHHHh-C-
Confidence 4578999999999999976543222 3568999999888888888999999998665433 468888988764 3
Q ss_pred CCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCc
Q 019874 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKS 331 (334)
Q Consensus 272 ~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~ 331 (334)
+...+.+ ++|...+++. +..+++ +++..+.|+++|.+++..+.++++.+.++
T Consensus 84 --g~~~v~i-~TNG~ll~~~---~~~l~~--~g~~~v~iSld~~~~~~~~~i~~~~~~~~ 135 (302)
T TIGR02668 84 --GIKDVSM-TTNGILLEKL---AKKLKE--AGLDRVNVSLDTLDPEKYKKITGRGALDR 135 (302)
T ss_pred --CCceEEE-EcCchHHHHH---HHHHHH--CCCCEEEEEecCCCHHHhhhccCCCcHHH
Confidence 4445655 4676544432 445554 47899999999999999998888665544
No 82
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=98.67 E-value=7.6e-08 Score=95.90 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=86.8
Q ss_pred CCCCCccccccccCCc---cccCCHHHHHHHHHHHHHC-C----CcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCC-C
Q 019874 202 CLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIAD-G----VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP-P 272 (334)
Q Consensus 202 C~~~CsfC~ip~~rG~---~rsr~~e~Iv~Ei~~l~~~-G----~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~-~ 272 (334)
|...|.||........ ....-.+.+++|++..... | ++.|.|-|.+.+... ...+..||..|.+.++ .
T Consensus 44 C~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~---~~~l~~ll~~l~~~~~~~ 120 (416)
T COG0635 44 CVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLS---PEQLERLLKALRELFNDL 120 (416)
T ss_pred ccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCC---HHHHHHHHHHHHHhcccC
Confidence 9999999998744221 2223467788899887654 2 455666554433221 2467888888877662 2
Q ss_pred CCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 273 ~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+....+.+ -++|..++.+- +..+++ .|++++++||||.++++||.++|.++.+++
T Consensus 121 ~~~~Eiti-E~nP~~~~~e~--~~~l~~--~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~ 175 (416)
T COG0635 121 DPDAEITI-EANPGTVEAEK--FKALKE--AGVNRISLGVQSFNDEVLKALGRIHDEEEA 175 (416)
T ss_pred CCCceEEE-EeCCCCCCHHH--HHHHHH--cCCCEEEeccccCCHHHHHHhcCCCCHHHH
Confidence 23356665 46999998755 777775 589999999999999999999999997654
No 83
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=98.62 E-value=4.4e-07 Score=89.29 Aligned_cols=124 Identities=14% Similarity=0.189 Sum_probs=90.0
Q ss_pred eeeeeccCCCCCCCccccccccC---CccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHh
Q 019874 193 VEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~r---G~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (334)
+..|.++.+||.+|.||..+... .+....+.++|.+.++.+.+.|++.|.|+|.+...+ .++.++++.+.+
T Consensus 59 ~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr-----~dl~eli~~l~~- 132 (373)
T PLN02951 59 YLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLR-----KDIEDICLQLSS- 132 (373)
T ss_pred EEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcch-----hhHHHHHHHHHh-
Confidence 44578899999999999754211 112347889999999888889999999998554432 358889988865
Q ss_pred CCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcC
Q 019874 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTK 330 (334)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e 330 (334)
++ ++..+.+ ++|...+++.+ ..+++ +|...+.|.++|.+++..+.+.|+...+
T Consensus 133 ~~--gi~~i~i-tTNG~lL~~~~---~~L~~--aGld~VnISLDsl~~e~~~~itr~~~~~ 185 (373)
T PLN02951 133 LK--GLKTLAM-TTNGITLSRKL---PRLKE--AGLTSLNISLDTLVPAKFEFLTRRKGHD 185 (373)
T ss_pred cC--CCceEEE-eeCcchHHHHH---HHHHh--CCCCeEEEeeccCCHHHHHHHhcCCCHH
Confidence 44 5545655 46766555443 45554 4789999999999999999988765543
No 84
>PRK06267 hypothetical protein; Provisional
Probab=98.61 E-value=1.2e-07 Score=92.54 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=81.5
Q ss_pred eeeeeccCCCC--CCCccccccccCC-----ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHH
Q 019874 193 VEILPINVGCL--GACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (334)
Q Consensus 193 ~~~v~isrGC~--~~CsfC~ip~~rG-----~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~ 265 (334)
...|..+.+|+ ++|+||..+..++ ..+.+++|+|++|++.+.+.|++.+.++|... +. ...+.++++.
T Consensus 28 ~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~~lsgG~~--~~---~~el~~i~e~ 102 (350)
T PRK06267 28 ERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLEFISGGYG--YT---TEEINDIAEM 102 (350)
T ss_pred EEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEEEEecCCC--CC---HHHHHHHHHH
Confidence 44567899999 9999999876433 24678999999999999999999887766432 21 2357778777
Q ss_pred HHHhCCCCCC-ceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 266 IVAELPPDGS-TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 266 l~~~i~~~~~-~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+.. +. +. .|++++.+ +... +..+ ....+..++||+++++++.++++++.++.
T Consensus 103 I~~-~~--~~~~~~s~G~~-----d~~~--~~~~-----~l~Gv~g~~ET~~~~~~~~i~~~~s~ed~ 155 (350)
T PRK06267 103 IAY-IQ--GCKQYLNVGII-----DFLN--INLN-----EIEGVVGAVETVNPKLHREICPGKPLDKI 155 (350)
T ss_pred HHH-hh--CCceEeecccC-----CHHH--Hhhc-----cccCceeeeecCCHHHHHhhCCCCCHHHH
Confidence 754 32 22 34443322 2211 2211 12234679999999999999999887654
No 85
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=98.51 E-value=1.9e-06 Score=76.39 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=80.7
Q ss_pred eeeeeccCCCCCCCccccccccCC--ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhC
Q 019874 193 VEILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG--~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (334)
.+++.+++|||.+|.||..+...+ .....++++|+++++... ..++.|.|+|.+...+ ..+.++++.+.+ .
T Consensus 17 ~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~i~~sGGEPll~-----~~l~~li~~~~~-~ 89 (191)
T TIGR02495 17 LAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQ-GLIDGVVITGGEPTLQ-----AGLPDFLRKVRE-L 89 (191)
T ss_pred eEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhc-CCCCeEEEECCcccCc-----HhHHHHHHHHHH-C
Confidence 356778999999999999874322 235689999999998752 2468899988665543 248889988865 2
Q ss_pred CCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCC
Q 019874 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVP 328 (334)
Q Consensus 271 ~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t 328 (334)
+ .++.+ .+|.. .++. ++.+++. ....++.+++++.++...+.++++.+
T Consensus 90 ---g-~~v~i-~TNg~--~~~~--l~~l~~~-g~~~~v~isl~~~~~~~~~~~g~~~~ 137 (191)
T TIGR02495 90 ---G-FEVKL-DTNGS--NPRV--LEELLEE-GLVDYVAMDVKAPPEKYPELYGLEKN 137 (191)
T ss_pred ---C-CeEEE-EeCCC--CHHH--HHHHHhc-CCCcEEEEeccCChHHHHHHHCCCCc
Confidence 4 35555 34543 3333 5666653 12578999999976666777665543
No 86
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.47 E-value=9.3e-07 Score=86.21 Aligned_cols=127 Identities=21% Similarity=0.329 Sum_probs=84.4
Q ss_pred cceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHH-CCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHH
Q 019874 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (334)
Q Consensus 190 ~~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~-~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (334)
......|.++.||+.+|.||.... .|..|..++++|++++..+.+ .++++|+|+| .|.++ .++.++++.|..
T Consensus 101 ~~~t~cvSsq~GC~~~C~FC~tg~-~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG-----~GEPl-~n~~~vi~~l~~ 173 (349)
T PRK14463 101 DRNTLCISSQVGCAMGCAFCLTGT-FRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMG-----MGEPL-ANLDNVIPALQI 173 (349)
T ss_pred CCcEEEEEecCCcCCCCccCCCCC-CCCCCCCCHHHHHHHHHHHHhcCCccEEEEec-----CCcch-hcHHHHHHHHHH
Confidence 346679999999999999998654 355788999999999988754 4789999987 23332 244455544432
Q ss_pred hCCC-CCC----ceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHh---CCCCCcCcc
Q 019874 269 ELPP-DGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVS---QKIVPTKSV 332 (334)
Q Consensus 269 ~i~~-~~~----~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M---~R~~t~e~v 332 (334)
+.. .+. ..++++ ++- +.+.+ ..+... .-..|.+.+.|.++++.+.+ +|+++.+++
T Consensus 174 -l~~~~gl~~s~r~itVs-TnG--l~~~i---~~l~~~--~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l 236 (349)
T PRK14463 174 -LTDPDGLQFSTRKVTVS-TSG--LVPEM---EELGRE--VTVNLAVSLNATTDEVRDRIMPVNRRYPLAEL 236 (349)
T ss_pred -hhcccccCcCCceEEEE-CCC--chHHH---HHHhhc--cCeEEEEeCCCCCHHHHHHhcCcccCCCHHHH
Confidence 210 021 345553 333 23333 444432 22467799999999999997 888887654
No 87
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=98.45 E-value=3.6e-06 Score=82.00 Aligned_cols=120 Identities=15% Similarity=0.169 Sum_probs=89.3
Q ss_pred ceeeeeeccCCCCCCCccccccccCC-ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHh
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG-~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (334)
|....+.++..|+.+|.||..+.... +....+.+++.+-++++.+.|+..|.|+|.+...+ .++.++++.+.+
T Consensus 6 P~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~-----~~~~~ii~~~~~- 79 (358)
T TIGR02109 6 PLWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPLAR-----PDLVELVAHARR- 79 (358)
T ss_pred CcEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCcccccc-----ccHHHHHHHHHH-
Confidence 45678999999999999998753222 23456788888878888788999999998665543 468899988865
Q ss_pred CCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCC
Q 019874 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325 (334)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R 325 (334)
. +. .+.+ .+|...++++. +..|.+ .++..+.|++++.++++...+++
T Consensus 80 ~---g~-~~~l-~TNG~ll~~e~--~~~L~~--~g~~~v~iSldg~~~e~~d~~rg 126 (358)
T TIGR02109 80 L---GL-YTNL-ITSGVGLTEAR--LDALAD--AGLDHVQLSFQGVDEALADRIAG 126 (358)
T ss_pred c---CC-eEEE-EeCCccCCHHH--HHHHHh--CCCCEEEEeCcCCCHHHHHHhcC
Confidence 2 32 4444 57777777766 666665 47889999999999998887754
No 88
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=98.44 E-value=2.7e-06 Score=83.64 Aligned_cols=122 Identities=14% Similarity=0.151 Sum_probs=91.5
Q ss_pred cceeeeeeccCCCCCCCccccccccC-CccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHH
Q 019874 190 NKFVEILPINVGCLGACTYCKTKHAR-GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (334)
Q Consensus 190 ~~~~~~v~isrGC~~~CsfC~ip~~r-G~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (334)
.+....+.++..|+.+|.||...... ...+..+++++.+-++.+.+.|+..|.|+|.+...+ .++.++++.+.+
T Consensus 14 ~P~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~-----~~~~~il~~~~~ 88 (378)
T PRK05301 14 PPLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEPLLR-----KDLEELVAHARE 88 (378)
T ss_pred CCeEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccCCc-----hhHHHHHHHHHH
Confidence 46778899999999999999865322 224567889888888888888999999998665543 358888888864
Q ss_pred hCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCC
Q 019874 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKI 326 (334)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~ 326 (334)
. +. .+.+ .+|...++++. +..+.+ .+...+.|++++.++++...+++.
T Consensus 89 ~----g~-~~~i-~TNG~ll~~~~--~~~L~~--~g~~~v~iSldg~~~e~~d~irg~ 136 (378)
T PRK05301 89 L----GL-YTNL-ITSGVGLTEAR--LAALKD--AGLDHIQLSFQDSDPELNDRLAGT 136 (378)
T ss_pred c----CC-cEEE-ECCCccCCHHH--HHHHHH--cCCCEEEEEecCCCHHHHHHHcCC
Confidence 2 32 3444 57888788766 666665 367899999999999988877544
No 89
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=98.42 E-value=2e-06 Score=82.43 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=89.1
Q ss_pred eeeeccCCCCCCCccccccc--cCCc-cccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhC
Q 019874 194 EILPINVGCLGACTYCKTKH--ARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (334)
Q Consensus 194 ~~v~isrGC~~~CsfC~ip~--~rG~-~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (334)
.-+.+++-|+++|.||--.. ...+ .-..++|+|..=++.+++.|++.|.|||..-. +..+|.++++.+.+ +
T Consensus 13 LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPl-----lR~dl~eIi~~l~~-~ 86 (322)
T COG2896 13 LRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPL-----LRKDLDEIIARLAR-L 86 (322)
T ss_pred EEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCch-----hhcCHHHHHHHHhh-c
Confidence 34678899999999996432 1111 12347999999999888899999999984432 14678999999875 2
Q ss_pred CCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 271 ~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
++..+.+ ++|-..+.... ..+++ +|+..+++.+.|.+++..+.+.+.-..++|
T Consensus 87 ---~~~~isl-TTNG~~L~~~a---~~Lk~--AGl~rVNVSLDsld~e~f~~IT~~~~~~~V 139 (322)
T COG2896 87 ---GIRDLSL-TTNGVLLARRA---ADLKE--AGLDRVNVSLDSLDPEKFRKITGRDRLDRV 139 (322)
T ss_pred ---ccceEEE-ecchhhHHHHH---HHHHH--cCCcEEEeecccCCHHHHHHHhCCCcHHHH
Confidence 4566765 45665444333 44453 699999999999999999999866555443
No 90
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.38 E-value=3.8e-06 Score=84.82 Aligned_cols=126 Identities=15% Similarity=0.159 Sum_probs=86.1
Q ss_pred eeeeeccCCCCCCCccccccccCCc--cccCCHHHHHHHHHHHHHCCCcEEEEee-ccCCCCCCCCCCCHHHHHHHHHHh
Q 019874 193 VEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSS-EDTGAYGRDIGVNLPILLNAIVAE 269 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG~--~rsr~~e~Iv~Ei~~l~~~G~kei~l~~-~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (334)
.+.|.++-.|+++|.||......+. -...++|+|++|++.+.+.|++++.|++ .+...++. ..+.++++.|.+.
T Consensus 85 fapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~---eyi~e~i~~I~~~ 161 (469)
T PRK09613 85 FAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCDI---EYILESIKTIYST 161 (469)
T ss_pred EEeccccCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCH---HHHHHHHHHHHHh
Confidence 3566688999999999998754442 2356999999999999999999999864 33222211 3566777777642
Q ss_pred CCCCCCceE-EEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCC
Q 019874 270 LPPDGSTML-RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVP 328 (334)
Q Consensus 270 i~~~~~~~i-r~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t 328 (334)
.+ +...+ ++ .++...++. +++..|++ +|+..+++-.||-+.++.+.+....+
T Consensus 162 ~~--~~g~i~~v-~inig~lt~--eey~~Lke--aGv~~~~l~qETY~~ety~~~hp~g~ 214 (469)
T PRK09613 162 KH--GNGEIRRV-NVNIAPTTV--ENYKKLKE--AGIGTYQLFQETYHKPTYEKMHPSGP 214 (469)
T ss_pred cc--ccCcceee-EEEeecCCH--HHHHHHHH--cCCCEEEeccccCCHHHHHhcCCCCC
Confidence 21 11122 22 334433554 33677775 58999999999999999999876433
No 91
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=98.35 E-value=3.8e-06 Score=83.38 Aligned_cols=106 Identities=22% Similarity=0.327 Sum_probs=77.0
Q ss_pred cccceeeeeeccCCCCCCCccccccccCCc-cccCCHHHHHHHHHHHHHC-CCcEEEEeeccCCCCCCCCCCCHHHHHHH
Q 019874 188 RRNKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (334)
Q Consensus 188 ~~~~~~~~v~isrGC~~~CsfC~ip~~rG~-~rsr~~e~Iv~Ei~~l~~~-G~kei~l~~~d~~~yg~d~~~~l~~Ll~~ 265 (334)
++.+-.+.+.++.+|+.+|.||......|. ....+.+++.+-++.+.+. ++++|.|+|.|-..... ..|..+++.
T Consensus 104 HrYp~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d---~~L~~iL~~ 180 (417)
T TIGR03820 104 HRYPDRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSD---DYLDWILTE 180 (417)
T ss_pred eccCCEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCCh---HHHHHHHHH
Confidence 345667788999999999999987644343 4566788888888888774 99999999977654421 246667888
Q ss_pred HHHhCCCCCCceEEEeec----CCCChhhhHHHHHHHHhC
Q 019874 266 IVAELPPDGSTMLRIGMT----NPPFILEHLKEIAEVLRH 301 (334)
Q Consensus 266 l~~~i~~~~~~~ir~~~~----~p~~i~~~l~~l~~l~~~ 301 (334)
|.+ +| .+..+|+++- .|..+++++ +..|++.
T Consensus 181 L~~-Ip--hV~~IRI~TR~pvv~P~RIT~el--l~~Lk~~ 215 (417)
T TIGR03820 181 LRA-IP--HVEVIRIGTRVPVVLPQRITDEL--VAILKKH 215 (417)
T ss_pred Hhh-cC--CCceEEEeeccccccccccCHHH--HHHHHhc
Confidence 875 77 7888998642 266777766 5555554
No 92
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.31 E-value=2.3e-06 Score=79.69 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=73.8
Q ss_pred eeccCCCCC--------CCccccccccCCcc---ccCCHH-HHHHHHHHHHHC--CCcEEEEeeccCCCCCCCCCCCHHH
Q 019874 196 LPINVGCLG--------ACTYCKTKHARGHL---GSYTVE-SLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPI 261 (334)
Q Consensus 196 v~isrGC~~--------~CsfC~ip~~rG~~---rsr~~e-~Iv~Ei~~l~~~--G~kei~l~~~d~~~yg~d~~~~l~~ 261 (334)
|-..-.||| .|+||..... |.+ +..|+. ++-++++.+.+. +.+-|...-.=++.|- + -.-|.+
T Consensus 28 ld~GF~CPNRDGti~rGGCtFC~~~g~-~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~~TNTyA-p-vevLre 104 (312)
T COG1242 28 LDGGFSCPNRDGTIGRGGCTFCSVAGS-GDFAGQPKISIAEQFKEQAERMHKKWKRGKYIAYFQAYTNTYA-P-VEVLRE 104 (312)
T ss_pred ccCCCCCCCCCCcccCCceeeecCCCC-CccccCcccCHHHHHHHHHHHHHHhhcCCcEEEEEeccccccC-c-HHHHHH
Confidence 344455775 4999976432 322 333444 344444444332 3344433222233342 1 123555
Q ss_pred HHHHHHHhCCCCCCceEEEeecCCCChhhhH-HHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 262 Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l-~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
..+.... .+ ++--+.+ .++|+.+.++. +-|+.+.+ +..-.+.+|+||..+++|+.+||+|+.+.+
T Consensus 105 ~ye~aL~-~~--~VVGLsI-gTRPDClpd~VldlL~e~~~--r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y 170 (312)
T COG1242 105 MYEQALS-EA--GVVGLSI-GTRPDCLPDDVLDLLAEYNK--RYEVWVELGLQTAHDKTLKRINRGHDFACY 170 (312)
T ss_pred HHHHHhC-cC--CeeEEee-cCCCCCCcHHHHHHHHHHhh--heEEEEEeccchhhHHHHHHHhcccchHHH
Confidence 5555443 23 5656665 38999988766 33344433 355689999999999999999999997654
No 93
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.31 E-value=6.4e-06 Score=80.88 Aligned_cols=128 Identities=16% Similarity=0.230 Sum_probs=85.2
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHH--------HHCCCcEEEEeeccCCCCCCCCC--CCHH
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV--------IADGVKEVWLSSEDTGAYGRDIG--VNLP 260 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l--------~~~G~kei~l~~~d~~~yg~d~~--~~l~ 260 (334)
.....|.++.||+.+|+||..... |..|..+.++|++++..+ ...+++.|+|+| +|..+- ..+.
T Consensus 120 ~~t~ciSsq~GCnl~C~FC~tg~~-g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmG-----mGEPLln~d~v~ 193 (368)
T PRK14456 120 RMTACISSQAGCALRCSFCATGQM-GFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMG-----MGEPLLNTDNVF 193 (368)
T ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeC-----cCccccCHHHHH
Confidence 456788999999999999998754 556778899999998443 135789999987 344331 2467
Q ss_pred HHHHHHHHh-CCC-CCCceEEEeecCCCChhhhHHHHHHHHhCCCCCC-eEEEccCCcCHHHHHHhC----CCCCcCcc
Q 019874 261 ILLNAIVAE-LPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLSVSQ----KIVPTKSV 332 (334)
Q Consensus 261 ~Ll~~l~~~-i~~-~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~-~l~igiQSgsd~vLk~M~----R~~t~e~v 332 (334)
++++.+.+. ... -+..++.++ ++- +.+. +..|++. +.. .|.|++.|.+++.-+.+. |+|+.+++
T Consensus 194 ~~i~~l~~~~~~~~is~r~Itis-T~G--l~~~---i~~L~~~--gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l 264 (368)
T PRK14456 194 EAVLTLSTRKYRFSISQRKITIS-TVG--ITPE---IDRLATS--GLKTKLAVSLHSADQEKRERLMPQAARDYPLDEL 264 (368)
T ss_pred HHHHHHhccccccCcCcCeeEEE-CCC--ChHH---HHHHHHc--CCCceEEEEecCCCHHHHHHhccccCCCCCHHHH
Confidence 777766542 100 012355543 332 3443 4555543 565 799999999999988773 57776653
No 94
>PLN02389 biotin synthase
Probab=98.30 E-value=4.5e-06 Score=82.32 Aligned_cols=126 Identities=12% Similarity=0.195 Sum_probs=82.4
Q ss_pred eeeeec-cCCCCCCCccccccccC--Cc--cccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC-CCHHHHHHHH
Q 019874 193 VEILPI-NVGCLGACTYCKTKHAR--GH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAI 266 (334)
Q Consensus 193 ~~~v~i-srGC~~~CsfC~ip~~r--G~--~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~-~~l~~Ll~~l 266 (334)
...+.+ +.||+++|.||...... +. +...++|+|+++++.+.+.|+++|.+...-.+..+.+.. ..+.++++.+
T Consensus 83 ~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~i 162 (379)
T PLN02389 83 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEI 162 (379)
T ss_pred EEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHH
Confidence 345566 79999999999976431 22 455899999999999999999998875311111221110 2345555555
Q ss_pred HHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCc
Q 019874 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKS 331 (334)
Q Consensus 267 ~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~ 331 (334)
.+ . +. .+ . .....++++. +..|++ +|+..+++.+++ +++..+.+..+++.++
T Consensus 163 k~-~---~l-~i--~-~s~G~l~~E~--l~~Lke--AGld~~~~~LeT-s~~~y~~i~~~~s~e~ 214 (379)
T PLN02389 163 RG-M---GM-EV--C-CTLGMLEKEQ--AAQLKE--AGLTAYNHNLDT-SREYYPNVITTRSYDD 214 (379)
T ss_pred hc-C---Cc-EE--E-ECCCCCCHHH--HHHHHH--cCCCEEEeeecC-ChHHhCCcCCCCCHHH
Confidence 42 2 22 22 2 2333455544 677775 589999999999 7888888877776654
No 95
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.25 E-value=9e-06 Score=79.56 Aligned_cols=129 Identities=16% Similarity=0.250 Sum_probs=81.8
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHH---H---CCCcEEEEeeccCCCCCCCCC--CCHHHH
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI---A---DGVKEVWLSSEDTGAYGRDIG--VNLPIL 262 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~---~---~G~kei~l~~~d~~~yg~d~~--~~l~~L 262 (334)
.....|.++.||+.+|.||..+.. |..|..++++|+++|.... . .|+..|+|+| .|..+- ..+.++
T Consensus 108 ~~t~ciSsqvGC~~~C~FC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~G-----mGEPLln~~~v~~~ 181 (356)
T PRK14455 108 GNSVCVTTQVGCRIGCTFCASTLG-GLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMG-----IGEPFDNYDNVMDF 181 (356)
T ss_pred CceEEEECCCCCCCCCCcCCCCCC-CCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEec-----cccccCCHHHHHHH
Confidence 456789999999999999999865 5578899999999998642 2 3578888877 232221 246677
Q ss_pred HHHHHHhCCC-CCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHH---hCCCCCcCcc
Q 019874 263 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV---SQKIVPTKSV 332 (334)
Q Consensus 263 l~~l~~~i~~-~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~---M~R~~t~e~v 332 (334)
++.+.+.... -+...+.++ ++- +.+.+ ..+.+.. +-..|.+.+-|.+++.-+. ++|+++.+++
T Consensus 182 l~~l~~~~g~~~s~r~itvs-T~G--~~~~i---~~l~d~~-l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~I 248 (356)
T PRK14455 182 LRIINDDKGLAIGARHITVS-TSG--IAPKI---YDFADEG-LQINLAISLHAPNNELRSSLMPINRAYPLEKL 248 (356)
T ss_pred HHHHhcccCcccCCCceEEE-ecC--chHhH---HHHHhcc-cCeeEEeccCCCCHHHHHHhcCcccCCCHHHH
Confidence 7766532100 011244443 222 12233 3344321 1234779999999999885 6777776654
No 96
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=98.22 E-value=1.3e-05 Score=77.49 Aligned_cols=120 Identities=22% Similarity=0.232 Sum_probs=71.6
Q ss_pred eeeeeccCCCCCCCccccccccCCcccc-CCHHHHHHHHHHHHH-CCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhC
Q 019874 193 VEILPINVGCLGACTYCKTKHARGHLGS-YTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG~~rs-r~~e~Iv~Ei~~l~~-~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (334)
.+.+.++.||+.+|.||..... +..+. .+.+++.+-+..+.+ .|+++|+|+|.|-.... | ..|.+|++.+.. +
T Consensus 97 r~l~~~t~~Cn~~Cr~C~~~~~-~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~-d--~~L~~ll~~l~~-i 171 (321)
T TIGR03821 97 RVLLIVTGGCAINCRYCFRRHF-PYQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAK-D--HRLDWLLNLLEQ-I 171 (321)
T ss_pred EEEEEeCCCcCCcCcCCCCCCc-CCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCC-c--hHHHHHHHHHHh-C
Confidence 3567799999999999986543 21221 222333332444443 48999999986654321 1 248899988864 6
Q ss_pred CCCCCceEEEee----cCCCChhhhHHHHHHHHhCCCCCCeE-EEccCCc---CHHHHHHh
Q 019874 271 PPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFL-HVPVQSG---SDAVLSVS 323 (334)
Q Consensus 271 ~~~~~~~ir~~~----~~p~~i~~~l~~l~~l~~~~~g~~~l-~igiQSg---sd~vLk~M 323 (334)
+ ....+|+++ ..|..+++++ ++.++.. +...+ .+.+.|. .+++.+++
T Consensus 172 ~--~~~~iri~tr~~~~~p~rit~el--~~~L~~~--~~~~~~~~h~dh~~Ei~d~~~~ai 226 (321)
T TIGR03821 172 P--HLKRLRIHTRLPVVIPDRITSGL--CDLLANS--RLQTVLVVHINHANEIDAEVADAL 226 (321)
T ss_pred C--CCcEEEEecCcceeeHHHhhHHH--HHHHHhc--CCcEEEEeeCCChHhCcHHHHHHH
Confidence 6 567888875 4555677666 5555543 44444 3455553 34444433
No 97
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=98.22 E-value=8.7e-06 Score=74.53 Aligned_cols=117 Identities=17% Similarity=0.112 Sum_probs=75.3
Q ss_pred eeeeccCCCCCCCccccccccCC--ccccCCHHHHHHHHHHHHHCC---CcEEEEeeccCCCCCCCCCCCHHHHHHHHHH
Q 019874 194 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADG---VKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (334)
Q Consensus 194 ~~v~isrGC~~~CsfC~ip~~rG--~~rsr~~e~Iv~Ei~~l~~~G---~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (334)
..+-++.|||++|.||..+..+. ..+..++++++++++.+...+ ...|.|+|.+...+. ..+.++++.+.+
T Consensus 17 ~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~----~~~~~li~~~~~ 92 (235)
T TIGR02493 17 RFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQP----EFLSELFKACKE 92 (235)
T ss_pred eEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCH----HHHHHHHHHHHH
Confidence 34567789999999998764432 235689999999999876532 257888876655431 124577777754
Q ss_pred hCCCCCCceEEEeecCCCC--hhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCC
Q 019874 269 ELPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKI 326 (334)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~--i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~ 326 (334)
. +. .+.+ .+|... +++.+ ..+.+ ....+.++++|.+++.-+..++.
T Consensus 93 -~---g~-~~~i-~TNG~~~~~~~~~---~~ll~---~~d~v~isl~~~~~~~~~~~~g~ 140 (235)
T TIGR02493 93 -L---GI-HTCL-DTSGFLGGCTEAA---DELLE---YTDLVLLDIKHFNPEKYKKLTGV 140 (235)
T ss_pred -C---CC-CEEE-EcCCCCCccHHHH---HHHHH---hCCEEEEeCCCCCHHHHHHHHCC
Confidence 2 43 3444 345422 23433 44443 24679999999999988776543
No 98
>PRK05926 hypothetical protein; Provisional
Probab=98.21 E-value=8.9e-06 Score=79.98 Aligned_cols=122 Identities=14% Similarity=0.127 Sum_probs=82.1
Q ss_pred eeccCCCCCCCccccccccCCc--cccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCC
Q 019874 196 LPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (334)
Q Consensus 196 v~isrGC~~~CsfC~ip~~rG~--~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~ 273 (334)
+..+-.|+..|.||......+. ....++|+|+++++.. +.|+++|.|++..-..+. ...+.++++.|.+.+|
T Consensus 72 in~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~~---~e~~~e~i~~Ik~~~p-- 145 (370)
T PRK05926 72 LYPTNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSCN---LAYYEELFSKIKQNFP-- 145 (370)
T ss_pred eecCCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCCC---HHHHHHHHHHHHHhCC--
Confidence 3458999999999996544442 3457899999999998 689999999863321111 1356788888887665
Q ss_pred CCceEEEeecCCC----------ChhhhHHHHHHHHhCCCCCCeEEE-ccCCcCHHHHHHhCC-CCCcC
Q 019874 274 GSTMLRIGMTNPP----------FILEHLKEIAEVLRHPCVYSFLHV-PVQSGSDAVLSVSQK-IVPTK 330 (334)
Q Consensus 274 ~~~~ir~~~~~p~----------~i~~~l~~l~~l~~~~~g~~~l~i-giQSgsd~vLk~M~R-~~t~e 330 (334)
.+.+..+.|. ...++. |..|++ +|+..++. |.|+.++++.+.+.. +.+.+
T Consensus 146 ---~i~i~a~s~~Ei~~~~~~~~~~~~e~--l~~Lke--AGl~~~~g~GaEi~~e~~r~~~~p~~~t~~ 207 (370)
T PRK05926 146 ---DLHIKALTAIEYAYLSKLDNLPVKEV--LQTLKI--AGLDSIPGGGAEILVDEIRETLAPGRLSSQ 207 (370)
T ss_pred ---CeeEEECCHHHHHHHHhhcCCCHHHH--HHHHHH--cCcCccCCCCchhcCHHHHHhhCCCCCCHH
Confidence 3333323221 112332 667765 57877776 699999999998853 44444
No 99
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.08 E-value=3.4e-05 Score=74.88 Aligned_cols=128 Identities=15% Similarity=0.111 Sum_probs=82.1
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHH---CCCcEEEEeeccCCCCCCCCC--CCHHHHHHH
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIG--VNLPILLNA 265 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~---~G~kei~l~~~d~~~yg~d~~--~~l~~Ll~~ 265 (334)
+....|..+.||+.+|.||..... |-.|..++++|++++....+ ..++.|+|.| +|..+- ..+.++++.
T Consensus 96 ~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmG-----mGEPllN~d~v~~~i~~ 169 (336)
T PRK14470 96 HHVVCLSSQAGCALGCAFCATGKL-GLDRSLRSWEIVAQLLAVRADSERPITGVVFMG-----QGEPFLNYDEVLRAAYA 169 (336)
T ss_pred CCEEEEeCCCCcCCCCccccCCCC-CCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEe-----cCccccCHHHHHHHHHH
Confidence 567899999999999999998754 44577799999999987654 2578899987 343321 235555555
Q ss_pred HHHhCCC-CCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhC---CCCCcCc
Q 019874 266 IVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQ---KIVPTKS 331 (334)
Q Consensus 266 l~~~i~~-~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~---R~~t~e~ 331 (334)
+...... -+..++.++ ++-. .+.+ .+++... .-..|.+++.+.+++..+.+. |+++.++
T Consensus 170 l~~~~~~~~~~~~ItVs-TnG~--~p~i---~~l~~~~-~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~ 232 (336)
T PRK14470 170 LCDPAGARIDGRRISIS-TAGV--VPMI---RRYTAEG-HKFRLCISLNAAIPWKRRALMPIEQGFPLDE 232 (336)
T ss_pred HhCccccccCCCceEEE-ecCC--hHHH---HHHHhcC-CCceEEEecCCCCHHHHHHhcCccccCCHHH
Confidence 5421000 013456653 4432 2333 3344322 225699999999999999884 4566543
No 100
>PRK15108 biotin synthase; Provisional
Probab=98.05 E-value=2.8e-05 Score=75.85 Aligned_cols=123 Identities=15% Similarity=0.211 Sum_probs=79.0
Q ss_pred eeeec-cCCCCCCCccccccccC--C--ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHH
Q 019874 194 EILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (334)
Q Consensus 194 ~~v~i-srGC~~~CsfC~ip~~r--G--~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (334)
..+.+ +.+|+++|.||...... + +.+..++|+|++.++.+.+.|+++|.+.+.-..-...+ -+.+.++++.+.+
T Consensus 44 ~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~-~e~i~~~i~~ik~ 122 (345)
T PRK15108 44 TLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERD-MPYLEQMVQGVKA 122 (345)
T ss_pred EeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcch-HHHHHHHHHHHHh
Confidence 34555 89999999999876421 2 23447999999999999999999997643211100000 0245566666653
Q ss_pred hCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcC
Q 019874 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTK 330 (334)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e 330 (334)
. +.. +.+ ....++.+. +..|++ +|+..+++.++| +++.-..+..+++.+
T Consensus 123 -~---~i~-v~~---s~G~ls~e~--l~~Lke--AGld~~n~~leT-~p~~f~~I~~~~~~~ 171 (345)
T PRK15108 123 -M---GLE-TCM---TLGTLSESQ--AQRLAN--AGLDYYNHNLDT-SPEFYGNIITTRTYQ 171 (345)
T ss_pred -C---CCE-EEE---eCCcCCHHH--HHHHHH--cCCCEEeecccc-ChHhcCCCCCCCCHH
Confidence 2 332 222 222355533 677775 589999999999 888777766555544
No 101
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.01 E-value=4e-05 Score=72.86 Aligned_cols=127 Identities=18% Similarity=0.192 Sum_probs=88.4
Q ss_pred eeeeeeccCCCCCCCcccccc---ccCCc--cccCCHHHHHHHHHHHHHC--CCcEEEEeeccCCCCCCCC-CCCHHHHH
Q 019874 192 FVEILPINVGCLGACTYCKTK---HARGH--LGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDI-GVNLPILL 263 (334)
Q Consensus 192 ~~~~v~isrGC~~~CsfC~ip---~~rG~--~rsr~~e~Iv~Ei~~l~~~--G~kei~l~~~d~~~yg~d~-~~~l~~Ll 263 (334)
...-|.-+.||+.+|.||++- +.|-+ -..-.+|.+++.++..++. +--|..|-|| |... ...+.+|+
T Consensus 107 NviqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGq-----GEP~lYP~l~~lV 181 (414)
T COG2100 107 NVIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQ-----GEPLLYPHLVDLV 181 (414)
T ss_pred eEEEecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCC-----CCCccchhHHHHH
Confidence 344567799999999999984 33322 2234688899888887753 3455666543 2221 24789999
Q ss_pred HHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHh--CCCCCcCc
Q 019874 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVS--QKIVPTKS 331 (334)
Q Consensus 264 ~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M--~R~~t~e~ 331 (334)
+++.. ++ +...+.+ -+|-..+++++ +++|.+ +|+..+.+++.|.+++.-|.| .+-|+++.
T Consensus 182 qalk~-~~--~v~vVSm-QTng~~L~~~l--v~eLee--AGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~k 243 (414)
T COG2100 182 QALKE-HK--GVEVVSM-QTNGVLLSKKL--VDELEE--AGLDRINLSVDALDPKLAKMLAGRKDYDVKK 243 (414)
T ss_pred HHHhc-CC--CceEEEE-eeCceeccHHH--HHHHHH--hCCceEEeecccCCHHHHHHhcCccccCHHH
Confidence 99965 66 6666543 36777788877 677765 689999999999999988866 33566554
No 102
>PRK07360 FO synthase subunit 2; Reviewed
Probab=98.00 E-value=3.7e-05 Score=75.63 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=77.8
Q ss_pred eeeccCCCCCCCccccccccCCc--cccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCC
Q 019874 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (334)
Q Consensus 195 ~v~isrGC~~~CsfC~ip~~rG~--~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (334)
.|+++-.|+.+|.||......+. -...++|+|++.++.+.+.|+++|.|+|..--.+. + ...+.++++.|.+.++
T Consensus 63 ~i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~-~-~e~~~~~i~~ik~~~~- 139 (371)
T PRK07360 63 NINFTNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAAD-S-LEFYLEILEAIKEEFP- 139 (371)
T ss_pred CcccchhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCC-c-HHHHHHHHHHHHHhCC-
Confidence 46779999999999998644321 12379999999999999999999999874211110 0 1246677787765443
Q ss_pred CCCceEEEeecCC----------CChhhhHHHHHHHHhCCCCCCeEE-EccCCcCHHHHHHhCCC
Q 019874 273 DGSTMLRIGMTNP----------PFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSVSQKI 326 (334)
Q Consensus 273 ~~~~~ir~~~~~p----------~~i~~~l~~l~~l~~~~~g~~~l~-igiQSgsd~vLk~M~R~ 326 (334)
.+.+..+.| ...++ +.+..|++ +|+..++ -+-++.++++.+.+..+
T Consensus 140 ----~i~i~a~s~~ei~~~~~~~G~~~~--e~l~~Lke--AGld~~~~t~~e~l~~~vr~~i~p~ 196 (371)
T PRK07360 140 ----DIHLHAFSPMEVYFAAREDGLSYE--EVLKALKD--AGLDSMPGTAAEILVDEVRRIICPE 196 (371)
T ss_pred ----CcceeeCCHHHHHHHHhhcCCCHH--HHHHHHHH--cCCCcCCCcchhhccHHHHHhhCCC
Confidence 222322211 22233 23666765 5787776 45667778888777554
No 103
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.98 E-value=5.5e-05 Score=73.68 Aligned_cols=128 Identities=16% Similarity=0.221 Sum_probs=80.7
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHH---HCCCcEEEEeeccCCCCCCCCC--CCHHHHHHH
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI---ADGVKEVWLSSEDTGAYGRDIG--VNLPILLNA 265 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~---~~G~kei~l~~~d~~~yg~d~~--~~l~~Ll~~ 265 (334)
.....|.++.||+.+|.||..+.. |..|..++++|++++..+. ..++..|+|.| +|..+- ..+.++++.
T Consensus 100 ~~t~cissq~GC~l~C~fC~tg~~-g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~G-----mGEPLln~d~v~~~i~~ 173 (343)
T PRK14469 100 RITACISTQVGCPVKCIFCATGQS-GFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMG-----MGEPLLNYENVIKSIKI 173 (343)
T ss_pred CeEEEEEecCCCCCcCcCCCCCCC-CccccCCHHHHHHHHHHHHHhccCCcCeEEEEc-----cChhhhhHHHHHHHHHH
Confidence 456789999999999999987542 4457788999999986543 23678888876 233221 134455555
Q ss_pred HHHhC-CCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCC-eEEEccCCcCHHHHHH---hCCCCCcCcc
Q 019874 266 IVAEL-PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLSV---SQKIVPTKSV 332 (334)
Q Consensus 266 l~~~i-~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~-~l~igiQSgsd~vLk~---M~R~~t~e~v 332 (334)
+...- ..-+...+.+ +++-. .+. +..+++. +.. .|.+.+.+.+++.-+. .+|+++.+++
T Consensus 174 l~~~~~~~~g~~~iti-sTnG~--~~~---i~~L~~~--~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~I 237 (343)
T PRK14469 174 LNHKKMKNIGIRRITI-STVGI--PEK---IIQLAEE--GLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEI 237 (343)
T ss_pred HhchhcccCCCCeEEE-ECCCC--hHH---HHHHHhh--CCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHH
Confidence 53210 0002235655 34432 233 3445543 555 6999999999998665 3677776554
No 104
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.93 E-value=0.00016 Score=70.27 Aligned_cols=126 Identities=19% Similarity=0.318 Sum_probs=81.1
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHH-CCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHh
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~-~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (334)
..+..|.++.||+.+|.||.+... |..|..++++|++++..+.+ .++..|+|+| .|..+ .++.++++.+..
T Consensus 102 r~t~cvSsQvGC~~~C~FC~Tg~~-g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmG-----mGEPL-~N~d~vi~al~~- 173 (345)
T PRK14466 102 RATLCVSSQVGCKMNCLFCMTGKQ-GFTGNLTAAQILNQIYSLPERDKLTNLVFMG-----MGEPL-DNLDEVLKALEI- 173 (345)
T ss_pred ceEEEEEcCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHhhhhcCCCCeEEEee-----eCcCc-ccHHHHHHHHHH-
Confidence 466789999999999999998764 65677899999999998743 3689999987 23332 244555555532
Q ss_pred CC-CCC----CceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCC---CCCcCcc
Q 019874 270 LP-PDG----STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK---IVPTKSV 332 (334)
Q Consensus 270 i~-~~~----~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R---~~t~e~v 332 (334)
+. ..+ ..++.++ ++- +.+.+ ..++... -..|.+.+=|.+++..+.+.+ .|+.+++
T Consensus 174 l~~~~g~~~s~r~ItVs-T~G--~~~~i---~~l~~~~--~~~LavSLha~~~e~R~~i~P~~~~~~l~~l 236 (345)
T PRK14466 174 LTAPYGYGWSPKRITVS-TVG--LKKGL---KRFLEES--ECHLAISLHSPFPEQRRELMPAEKAFSIKEI 236 (345)
T ss_pred HhhccccCcCCceEEEE-cCC--CchHH---HHHhhcc--CcEEEEEcCCCCHHHHHHhcCCccCCCHHHH
Confidence 21 001 1355553 332 22333 2333211 236789999999999887754 4665543
No 105
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.87 E-value=0.00024 Score=69.21 Aligned_cols=127 Identities=18% Similarity=0.282 Sum_probs=79.4
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHC-C-----CcEEEEeeccCCCCCCCCCCCHHHHHH
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G-----VKEVWLSSEDTGAYGRDIGVNLPILLN 264 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~-G-----~kei~l~~~d~~~yg~d~~~~l~~Ll~ 264 (334)
.....|.++.||+.+|.||..+.. |..|..++++|++++...... | +++|+|.| +|..+ .++..+++
T Consensus 92 ~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~G-----mGEPl-ln~~~v~~ 164 (343)
T PRK14468 92 RKTICVSTMVGCPAGCAFCATGAM-GFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMG-----MGEPL-LNYENVLK 164 (343)
T ss_pred CCEEEEEecCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEec-----cCccc-cCHHHHHH
Confidence 456789999999999999987543 556888999999999866543 2 56788876 33332 23444555
Q ss_pred HHHHhCCCCCC----ceEEEeecCCCChhhhHHHHHHHHhCCCCCC-eEEEccCCcCHHHHHHhC---CCCCcCcc
Q 019874 265 AIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLSVSQ---KIVPTKSV 332 (334)
Q Consensus 265 ~l~~~i~~~~~----~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~-~l~igiQSgsd~vLk~M~---R~~t~e~v 332 (334)
.+.......+. ..+.++ ++- +.+. +..+++. +.. .|.+.+-|.+++.-+.+. ++++.+++
T Consensus 165 ~i~~l~~~~g~~l~~r~itvS-T~G--~~~~---i~~L~~~--~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~l 232 (343)
T PRK14468 165 AARIMLHPQALAMSPRRVTLS-TVG--IPKG---IRRLAEE--DLGVRLALSLHAPDEETRQRIIPTAHRYSIAEI 232 (343)
T ss_pred HHHHhcccccccccCceEEEE-CCC--ChHH---HHHHHHh--CcCcEEEEEcCCCCHHHHHHhccccccCCHHHH
Confidence 44321010021 245553 332 1222 3344443 333 599999999999988874 66666543
No 106
>PRK08444 hypothetical protein; Provisional
Probab=97.86 E-value=5.7e-05 Score=73.89 Aligned_cols=123 Identities=16% Similarity=0.192 Sum_probs=82.1
Q ss_pred eeeccCCCCCCCccccccccCCc--cccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCC
Q 019874 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (334)
Q Consensus 195 ~v~isrGC~~~CsfC~ip~~rG~--~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (334)
.|..+--|.+.|.||......+. -...++|+|++.++...+.|+++|.|++..-..+. -..+.++++.|.+.+|
T Consensus 52 ~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~---~e~y~e~ir~Ik~~~p- 127 (353)
T PRK08444 52 HINPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYG---YEWYLEIFKKIKEAYP- 127 (353)
T ss_pred CcccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCC---HHHHHHHHHHHHHHCC-
Confidence 46678899999999998643331 12479999999999999999999999874322111 1346788888877655
Q ss_pred CCCceEEEeecCCCC---------h-hhhHHHHHHHHhCCCCCCeEEE-ccCCcCHHHHHHhCCCCCc
Q 019874 273 DGSTMLRIGMTNPPF---------I-LEHLKEIAEVLRHPCVYSFLHV-PVQSGSDAVLSVSQKIVPT 329 (334)
Q Consensus 273 ~~~~~ir~~~~~p~~---------i-~~~l~~l~~l~~~~~g~~~l~i-giQSgsd~vLk~M~R~~t~ 329 (334)
+ +.++-+.|.. + .+ +.|..|++ +|...++- |.|..+|++.+.+-.+.+.
T Consensus 128 -~---i~i~a~s~~Ei~~~a~~~g~~~~--e~l~~Lke--AGl~~~~g~~aEi~~~~vr~~I~p~k~~ 187 (353)
T PRK08444 128 -N---LHVKAMTAAEVDFLSRKFGKSYE--EVLEDMLE--YGVDSMPGGGAEIFDEEVRKKICKGKVS 187 (353)
T ss_pred -C---ceEeeCCHHHHHHHHHHcCCCHH--HHHHHHHH--hCcccCCCCCchhcCHHHHhhhCCCCCC
Confidence 2 3333222221 1 12 23566765 47777766 6888899998888654443
No 107
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.86 E-value=0.00032 Score=68.65 Aligned_cols=119 Identities=18% Similarity=0.310 Sum_probs=76.2
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHH---HHHH-C--C---CcEEEEeeccCCCCCCCCC--CCH
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR---TVIA-D--G---VKEVWLSSEDTGAYGRDIG--VNL 259 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~---~l~~-~--G---~kei~l~~~d~~~yg~d~~--~~l 259 (334)
.....|..+.|||.+|.||..+.. |..|..++++|++++. ..+. . | ++.|+|.| .|..+- ..+
T Consensus 101 r~t~CvSsq~GC~~~C~FC~tg~~-g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmG-----mGEPLln~~~v 174 (354)
T PRK14460 101 RYTQCLSCQVGCAMGCTFCSTGTM-GFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMG-----MGEPLLNLDEV 174 (354)
T ss_pred ceeEEeeCCCCcCCCCccCCCCCC-CCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEec-----CCcccCCHHHH
Confidence 456789999999999999987643 4567889999999994 3332 2 3 67888876 233221 124
Q ss_pred HHHHHHHHHhCCCCCC----ceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCC
Q 019874 260 PILLNAIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKI 326 (334)
Q Consensus 260 ~~Ll~~l~~~i~~~~~----~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~ 326 (334)
.+.++.+.+. . |+ ..+.++ ++-. .+. +..|+.. +...|.|.+.|.+++..+.+.++
T Consensus 175 ~~~l~~l~~~-~--Gl~~~~r~itvs-T~G~--~~~---i~~L~~~--~l~~L~iSLha~~~e~r~~i~p~ 234 (354)
T PRK14460 175 MRSLRTLNNE-K--GLNFSPRRITVS-TCGI--EKG---LRELGES--GLAFLAVSLHAPNQELRERIMPK 234 (354)
T ss_pred HHHHHHHhhh-h--ccCCCCCeEEEE-CCCC--hHH---HHHHHhC--CCcEEEEeCCCCCHHHHHHhcCc
Confidence 4555544321 1 22 245553 3332 232 3445543 45789999999999999887553
No 108
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=97.85 E-value=8.1e-05 Score=61.82 Aligned_cols=72 Identities=17% Similarity=0.099 Sum_probs=53.5
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCC--CCEEEEccccCCChhh--hccCcc-EEEcCCChHHHHHHHHHHhcC
Q 019874 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVPQGSRDL--KELEGV-SIVGVQQIDRVVEVVEETLKG 168 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~--~~VVv~GC~a~~~~~~--~~~~~d-~vvG~~e~~~i~e~l~~~~~g 168 (334)
.++|+|.++ |.+.+. ..+..+++.+|+.+ .+||+||.+++..|+. ....+| ++.|++| ..++++++....|
T Consensus 38 ~~pdiv~~S-~~~~~~--~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE-~~~~~l~~~l~~g 113 (127)
T cd02068 38 LKPDVVGIS-LMTSAI--YEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGE-ETFLKLLEELEEG 113 (127)
T ss_pred cCCCEEEEe-eccccH--HHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcH-HHHHHHHHHHHcC
Confidence 578999995 443332 35666777777654 7899999999999875 233578 6889998 6899999887655
Q ss_pred C
Q 019874 169 H 169 (334)
Q Consensus 169 ~ 169 (334)
.
T Consensus 114 ~ 114 (127)
T cd02068 114 E 114 (127)
T ss_pred C
Confidence 3
No 109
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.81 E-value=0.00019 Score=69.93 Aligned_cols=129 Identities=17% Similarity=0.270 Sum_probs=79.8
Q ss_pred cceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHH---CCCcEEEEeeccCCCCCCCCC--CCHHHHHH
Q 019874 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIG--VNLPILLN 264 (334)
Q Consensus 190 ~~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~---~G~kei~l~~~d~~~yg~d~~--~~l~~Ll~ 264 (334)
...+..|.++-||+.+|.||..+.. |..|..++++|++++....+ .++..|+|.| .|..+- ..+.+.++
T Consensus 99 ~r~t~cvSsqvGC~~~C~FC~tg~~-g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmG-----mGEPlln~~~v~~~i~ 172 (345)
T PRK14457 99 KRLTVCVSSQVGCPMACDFCATGKG-GLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMG-----MGEPLLNIDEVLAAIR 172 (345)
T ss_pred CCCEEEEeCCCCCCCcCCcCCCCCC-CCccccCHHHHHHHHHHHHHHhcCCCCEEEEEe-----cCccccCHHHHHHHHH
Confidence 3567899999999999999988653 55677899999999987654 3578898876 233221 23445555
Q ss_pred HHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCC----CCC-CeEEEccCCcCHHHHHHh---CCCCCcCc
Q 019874 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP----CVY-SFLHVPVQSGSDAVLSVS---QKIVPTKS 331 (334)
Q Consensus 265 ~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~----~g~-~~l~igiQSgsd~vLk~M---~R~~t~e~ 331 (334)
.+.+.+. -+...+.+++.- +.+.+ ..++... ... ..+.+.+=|.+++..+.+ +++|+.++
T Consensus 173 ~l~~~~~-i~~r~itvST~G---~~~~i---~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~ 240 (345)
T PRK14457 173 CLNQDLG-IGQRRITVSTVG---VPKTI---PQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIEN 240 (345)
T ss_pred HHhcccC-CccCceEEECCC---chhhH---HHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHH
Confidence 5533110 012366664431 11222 2333211 002 258899999999999887 45565443
No 110
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=97.81 E-value=0.00012 Score=67.64 Aligned_cols=116 Identities=21% Similarity=0.190 Sum_probs=73.2
Q ss_pred eeeeeccCCCCCCCccccccccC--CccccCCHHHHHHHHHHHHH---CCCcEEEEeeccCCCCCCCCCCC-HHHHHHHH
Q 019874 193 VEILPINVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVN-LPILLNAI 266 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~r--G~~rsr~~e~Iv~Ei~~l~~---~G~kei~l~~~d~~~yg~d~~~~-l~~Ll~~l 266 (334)
...+....|||.+|.||..+... +.-+..++++|+++++.... .....|.|+|.+.+.+ .. +.+|++.+
T Consensus 21 ~~~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPll~-----~~~~~~l~~~~ 95 (246)
T PRK11145 21 IRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAILQ-----AEFVRDWFRAC 95 (246)
T ss_pred eEEEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHhcC-----HHHHHHHHHHH
Confidence 34666789999999999976432 22356799999999987643 2335688887554432 23 45777877
Q ss_pred HHhCCCCCCceEEEeecCCCC--hhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCC
Q 019874 267 VAELPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325 (334)
Q Consensus 267 ~~~i~~~~~~~ir~~~~~p~~--i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R 325 (334)
.+. |. .+.+ .+|-.. +.+. ++.+.. .+..+.+++.|.+++..+.+..
T Consensus 96 k~~----g~-~i~l-~TNG~~~~~~~~---~~~ll~---~~d~v~islk~~~~e~~~~~~g 144 (246)
T PRK11145 96 KKE----GI-HTCL-DTNGFVRRYDPV---IDELLD---VTDLVMLDLKQMNDEIHQNLVG 144 (246)
T ss_pred HHc----CC-CEEE-ECCCCCCcchHH---HHHHHH---hCCEEEECCCcCChhhcccccC
Confidence 642 43 3444 233321 1232 444443 2567899999999987776643
No 111
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.81 E-value=0.00012 Score=72.07 Aligned_cols=128 Identities=17% Similarity=0.266 Sum_probs=79.7
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHH---C------C--CcEEEEeeccCCCCCCCCC--C
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---D------G--VKEVWLSSEDTGAYGRDIG--V 257 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~---~------G--~kei~l~~~d~~~yg~d~~--~ 257 (334)
.....|.++.||+.+|.||..+.. |-.|..++++|++++..+.+ . | +++|+|.| .|..+- .
T Consensus 120 ~~tlCvSsQvGC~m~C~FCatg~~-g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmG-----mGEPLlN~d 193 (373)
T PRK14459 120 RATLCISSQAGCGMACPFCATGQG-GLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMG-----MGEPLANYK 193 (373)
T ss_pred CceEEEEecCCCCCcCCCCCCCCC-CCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEec-----CCcchhhHH
Confidence 456789999999999999997653 55788999999999987642 1 2 67788876 232221 2
Q ss_pred CHHHHHHHHHHhCCC-CCCc--eEEEeecCCCChhhhHHHHHHHHhCCCCCC-eEEEccCCcCHHHHHHh---CCCCCcC
Q 019874 258 NLPILLNAIVAELPP-DGST--MLRIGMTNPPFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLSVS---QKIVPTK 330 (334)
Q Consensus 258 ~l~~Ll~~l~~~i~~-~~~~--~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~-~l~igiQSgsd~vLk~M---~R~~t~e 330 (334)
.+.++++.|....+. .++. .+.+++. .+.+. +..+++. +.+ .|.+.+=|.+++.-+.+ ||.|+.+
T Consensus 194 ~V~~~i~~l~~~~~~g~gis~r~ITvST~---Gl~~~---i~~la~~--~l~~~LavSLha~d~e~R~~l~p~n~~~~l~ 265 (373)
T PRK14459 194 RVVAAVRRITAPAPEGLGISARNVTVSTV---GLVPA---IRKLADE--GLPVTLAVSLHAPDDELRDELVPVNTRWKVD 265 (373)
T ss_pred HHHHHHHHHhCcccccCCccCCEEEEECc---CchhH---HHHHHHh--cCCeEEEEEeCCCCHHHHHHhcCcccCCCHH
Confidence 355555555431010 0222 4444322 12232 3344442 233 69999999999997765 3567765
Q ss_pred cc
Q 019874 331 SV 332 (334)
Q Consensus 331 ~v 332 (334)
++
T Consensus 266 ~l 267 (373)
T PRK14459 266 EV 267 (373)
T ss_pred HH
Confidence 53
No 112
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=97.76 E-value=0.00021 Score=70.03 Aligned_cols=128 Identities=17% Similarity=0.302 Sum_probs=79.3
Q ss_pred cceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHH------CCCcEEEEeeccCCCCCCCCC--CCHHH
Q 019874 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA------DGVKEVWLSSEDTGAYGRDIG--VNLPI 261 (334)
Q Consensus 190 ~~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~------~G~kei~l~~~d~~~yg~d~~--~~l~~ 261 (334)
......|..+.||+.+|+||..+.. |..|..++++|++++..+.. .++..|+|.| .|..+- ..+.+
T Consensus 103 ~~~t~cVSsQ~GC~l~C~fC~t~~~-g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmG-----mGEPLln~d~v~~ 176 (355)
T TIGR00048 103 DRATVCVSSQVGCALGCTFCATAKG-GFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMG-----MGEPLLNLNEVVK 176 (355)
T ss_pred CCcEEEEecCCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEec-----CCchhhCHHHHHH
Confidence 3456789999999999999998654 55688999999999875532 2467788876 232221 22444
Q ss_pred HHHHHHHhCCCCCC--ceEEEeecCCCChhhhHHHHHHHHhCCCCCC-eEEEccCCcCHHHHHHh---CCCCCcCcc
Q 019874 262 LLNAIVAELPPDGS--TMLRIGMTNPPFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLSVS---QKIVPTKSV 332 (334)
Q Consensus 262 Ll~~l~~~i~~~~~--~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~-~l~igiQSgsd~vLk~M---~R~~t~e~v 332 (334)
+++.+.+... .++ .++.++ ++- +.+. +..++.. +.. .|.+.+-|.+++..+.+ +|.|+.+++
T Consensus 177 ~l~~l~~~~g-~~i~~~~itis-T~G--~~~~---i~~l~~~--~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~l 244 (355)
T TIGR00048 177 AMEIMNDDFG-LGISKRRITIS-TSG--VVPK---IDILADK--MLQVALAISLHAPNDELRSSLMPINKKYNIETL 244 (355)
T ss_pred HHHHhhcccc-cCcCCCeEEEE-CCC--chHH---HHHHHHh--CCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHH
Confidence 5555532110 012 355553 333 1233 3445442 233 57899999999998876 567765543
No 113
>PRK09234 fbiC FO synthase; Reviewed
Probab=97.72 E-value=0.00015 Score=78.28 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=75.1
Q ss_pred eeeccCCCCCCCccccccccCC--ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCC
Q 019874 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (334)
Q Consensus 195 ~v~isrGC~~~CsfC~ip~~rG--~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (334)
.|..+.+|+.+|.||......+ .....++|+|+++++...+.|+.+|.++|..--.+. ...+.++++.|.+..|
T Consensus 529 ~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~~---~~~y~~lir~IK~~~p- 604 (843)
T PRK09234 529 NINFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWVAGATEVCMQGGIHPELP---GTGYADLVRAVKARVP- 604 (843)
T ss_pred ceecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcC---HHHHHHHHHHHHHhCC-
Confidence 4667999999999999875432 234579999999999999999999999863211111 1356788888877655
Q ss_pred CCCceEEEeecCCCC----------hhhhHHHHHHHHhCCCCCCeEEE-ccCCcCHHHHHHhC
Q 019874 273 DGSTMLRIGMTNPPF----------ILEHLKEIAEVLRHPCVYSFLHV-PVQSGSDAVLSVSQ 324 (334)
Q Consensus 273 ~~~~~ir~~~~~p~~----------i~~~l~~l~~l~~~~~g~~~l~i-giQSgsd~vLk~M~ 324 (334)
++.+ ....|.. ..+ +.|..|++ +|+..++- +-+-.++++-+.+.
T Consensus 605 -~i~i---~afsp~Ei~~~a~~~Gl~~~--e~l~~Lke--AGLds~pgt~aeil~d~vr~~i~ 659 (843)
T PRK09234 605 -SMHV---HAFSPMEIVNGAARLGLSIR--EWLTALRE--AGLDTIPGTAAEILDDEVRWVLT 659 (843)
T ss_pred -CeeE---EecChHHHHHHHHHcCCCHH--HHHHHHHH--hCcCccCCCchhhCCHHHHhhcC
Confidence 3333 2222311 123 23667765 57877765 44444554444443
No 114
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=97.69 E-value=9.4e-05 Score=68.42 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=52.5
Q ss_pred eeeeccCCCCCCCccccccccC-----CccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHH
Q 019874 194 EILPINVGCLGACTYCKTKHAR-----GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (334)
Q Consensus 194 ~~v~isrGC~~~CsfC~ip~~r-----G~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (334)
.+|.+ .|||.+|.||..++.. +.++..+.++++++++.+...|++.|.|+|.+-..+ ..+.+|++.+.+
T Consensus 25 ~FvR~-~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~-----~~l~~li~~l~~ 98 (238)
T TIGR03365 25 MFVRT-GGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPALQ-----KPLGELIDLGKA 98 (238)
T ss_pred EEEEe-CCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchhhh-----HhHHHHHHHHHH
Confidence 35555 4999999999987632 123457999999999988766789999999665543 368889998865
No 115
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=97.69 E-value=0.00025 Score=57.87 Aligned_cols=85 Identities=20% Similarity=0.217 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEEEEccccCCC
Q 019874 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQGS 138 (334)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~--~~~VVv~GC~a~~~ 138 (334)
-..+++.|++.||++.-. ...+|+|.+++ +.+ .....+.++++.+|+. +.+|++||.+++..
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~-~~~-~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~ 94 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISV-SMT-PNLPEAKRLARAIKERNPNIPIVVGGPHATAD 94 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEE-SSS-THHHHHHHHHHHHHTTCTTSEEEEEESSSGHH
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEc-cCc-CcHHHHHHHHHHHHhcCCCCEEEEECCchhcC
Confidence 567778888888876311 24789999955 222 2334567778877776 46899999999999
Q ss_pred hhh-h-c-cCcc-EEEcCCChHHHHHHH
Q 019874 139 RDL-K-E-LEGV-SIVGVQQIDRVVEVV 162 (334)
Q Consensus 139 ~~~-~-~-~~~d-~vvG~~e~~~i~e~l 162 (334)
|+. . . ..+| +++|++| ..+++++
T Consensus 95 ~~~~l~~~~~~D~vv~GegE-~~~~~l~ 121 (121)
T PF02310_consen 95 PEEILREYPGIDYVVRGEGE-EAFPELL 121 (121)
T ss_dssp HHHHHHHHHTSEEEEEETTS-SHHHH--
T ss_pred hHHHhccCcCcceecCCChH-HhhcccC
Confidence 874 2 3 4567 7999999 4676654
No 116
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00015 Score=70.05 Aligned_cols=99 Identities=26% Similarity=0.382 Sum_probs=76.5
Q ss_pred cccceeeeeeccCCCCCCCccccccccCCc-cccCCHHHHHHHHHHHHHC-CCcEEEEeeccCCCCCCCCCCCHHHHHHH
Q 019874 188 RRNKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNA 265 (334)
Q Consensus 188 ~~~~~~~~v~isrGC~~~CsfC~ip~~rG~-~rsr~~e~Iv~Ei~~l~~~-G~kei~l~~~d~~~yg~d~~~~l~~Ll~~ 265 (334)
++.+..+.+.++.+|+-.|.||.-..+-|. -...+.+++-.-+..+.++ -++||.|+|.|-..- .| ..|..|+++
T Consensus 107 HrY~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~l-s~--~~L~~ll~~ 183 (369)
T COG1509 107 HRYPDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSGGDPLSL-SD--KKLEWLLKR 183 (369)
T ss_pred eecCCeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecCCCcccc-CH--HHHHHHHHH
Confidence 345667899999999999999987766554 3346888888888888775 689999999775432 12 468899999
Q ss_pred HHHhCCCCCCceEEEee----cCCCChhhhH
Q 019874 266 IVAELPPDGSTMLRIGM----TNPPFILEHL 292 (334)
Q Consensus 266 l~~~i~~~~~~~ir~~~----~~p~~i~~~l 292 (334)
|.+ || -++.+||++ ..|..|+++|
T Consensus 184 L~~-Ip--Hv~iiRi~TR~pvv~P~RIt~~L 211 (369)
T COG1509 184 LRA-IP--HVKIIRIGTRLPVVLPQRITDEL 211 (369)
T ss_pred Hhc-CC--ceeEEEeecccceechhhccHHH
Confidence 975 88 788999987 4677788776
No 117
>PRK05927 hypothetical protein; Provisional
Probab=97.66 E-value=7e-05 Score=73.18 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=78.6
Q ss_pred eeeccCCCCCCCccccccccCCc-c-ccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCC
Q 019874 195 ILPINVGCLGACTYCKTKHARGH-L-GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (334)
Q Consensus 195 ~v~isrGC~~~CsfC~ip~~rG~-~-rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (334)
.+.++.-|+.+|.||......+. . ...++|+|++.++...+.|+++|.|+|..-..++. ..+.++++.|.+..|
T Consensus 48 ~i~~Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~---e~~~~~i~~ik~~~p- 123 (350)
T PRK05927 48 NPNYTNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGI---DYLEELVRITVKEFP- 123 (350)
T ss_pred CCccchhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 45678899999999998643332 1 25689999999999999999999998643222221 356778888876554
Q ss_pred CCCceEEEeecC----------CCChhhhHHHHHHHHhCCCCCCeEE-EccCCcCHHHHHHhCC
Q 019874 273 DGSTMLRIGMTN----------PPFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSVSQK 325 (334)
Q Consensus 273 ~~~~~ir~~~~~----------p~~i~~~l~~l~~l~~~~~g~~~l~-igiQSgsd~vLk~M~R 325 (334)
++ .+.... ....+++ .+..|++ +|..+++ .++|+.++.+-+....
T Consensus 124 -~l---~~~~~s~~ei~~~~~~~G~~~~e--~l~~Lk~--aGl~~l~g~~~Et~~~~~~~~~~p 179 (350)
T PRK05927 124 -SL---HPHFFSAVEIAHAAQVSGISTEQ--ALERLWD--AGQRTIPGGGAEILSERVRKIISP 179 (350)
T ss_pred -CC---cccCCCHHHHHHHHHhcCCCHHH--HHHHHHH--cCcccCCCCCchhCCHHHhhccCC
Confidence 22 111111 1222333 3677775 4666555 4899999998877754
No 118
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=97.65 E-value=0.00044 Score=67.47 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=72.4
Q ss_pred eeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCC--CcEEEEee-ccCCCCCCCCCCCHHHHHHHHHH
Q 019874 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG--VKEVWLSS-EDTGAYGRDIGVNLPILLNAIVA 268 (334)
Q Consensus 192 ~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G--~kei~l~~-~d~~~yg~d~~~~l~~Ll~~l~~ 268 (334)
.+..|.++.||+.+|.||..+.. |..|..++++|++++..+...| +..|+|.| .....+ .++.+.++.|..
T Consensus 100 ~t~CvssqvGC~~~C~FC~tg~~-g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPLln-----~~v~~~i~~l~~ 173 (347)
T PRK14453 100 ESFCISSQCGCGFGCRFCATGSI-GLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEALAN-----PELFDALKILTD 173 (347)
T ss_pred eeEEEecCCCcCCCCCCCCCCCC-CCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCccCC-----HHHHHHHHHHhc
Confidence 56789999999999999998864 6678899999999999776554 88899988 333222 235555554432
Q ss_pred hCCCCC--CceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHh
Q 019874 269 ELPPDG--STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVS 323 (334)
Q Consensus 269 ~i~~~~--~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M 323 (334)
...-+ ..++.+++ .- .+ +.++.+.... + ...+.+.+=|.+++.-+.+
T Consensus 174 -~~~~~~~~r~itVsT-~G-~~-~~i~~l~~~~--~--~v~LalSLha~dd~~r~~l 222 (347)
T PRK14453 174 -PNLFGLSQRRITIST-IG-II-PGIQRLTQEF--P--QVNLTFSLHSPFESQRSEL 222 (347)
T ss_pred -ccccCCCCCcEEEEC-CC-Cc-hhHHHHHhhc--c--CcCEEEEecCCCHHHHHHh
Confidence 11001 23455432 21 11 2222233222 1 2345568888887775544
No 119
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=97.64 E-value=0.0011 Score=66.85 Aligned_cols=118 Identities=21% Similarity=0.252 Sum_probs=80.6
Q ss_pred eeeeeeccCCCCCCCcccccccc-----C-Cc-cccCCHHHHHHHHHHHHHC--CCcEEEEeeccCCCCCCCC--CCCHH
Q 019874 192 FVEILPINVGCLGACTYCKTKHA-----R-GH-LGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDI--GVNLP 260 (334)
Q Consensus 192 ~~~~v~isrGC~~~CsfC~ip~~-----r-G~-~rsr~~e~Iv~Ei~~l~~~--G~kei~l~~~d~~~yg~d~--~~~l~ 260 (334)
....+.++.||+.+|.||...+. + |. .+..+++++++.++.+.+. +...|.|+| +|..+ .....
T Consensus 24 ~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG-----~GEPLl~~e~~~ 98 (442)
T TIGR01290 24 ARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAG-----PGDPLANIGKTF 98 (442)
T ss_pred CEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEec-----CCCcccCccccH
Confidence 45678999999999999986432 1 21 3557999999999988764 567788876 33332 12345
Q ss_pred HHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHh
Q 019874 261 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVS 323 (334)
Q Consensus 261 ~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M 323 (334)
++++.+.+.++ ++ .+.+ ++|-..+.+. +..|+. .+..++.+.+-+.++++-+.+
T Consensus 99 ~~l~~~~~~~~--~i-~i~l-sTNG~~l~e~---i~~L~~--~gvd~V~islka~d~e~~~~I 152 (442)
T TIGR01290 99 QTLELVARQLP--DV-KLCL-STNGLMLPEH---VDRLVD--LGVGHVTITINAIDPAVGEKI 152 (442)
T ss_pred HHHHHHHHhcC--CC-eEEE-ECCCCCCHHH---HHHHHH--CCCCeEEEeccCCCHHHHhhc
Confidence 77777766544 33 4555 4666434333 455554 367899999999999998765
No 120
>PTZ00413 lipoate synthase; Provisional
Probab=97.62 E-value=0.00058 Score=66.88 Aligned_cols=124 Identities=14% Similarity=0.211 Sum_probs=86.4
Q ss_pred eeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCC---C-CCHHHHHHHHHH
Q 019874 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---G-VNLPILLNAIVA 268 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~---~-~~l~~Ll~~l~~ 268 (334)
-.++.....|+..|.||.+.... +.-..+++++++-.+...+.|.+.+++|+.+- .|+ + ..+.+.+++|.+
T Consensus 150 ATfmilG~~CTr~C~FCaqstg~-~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~R----DDL~D~ga~~~a~~I~~Ir~ 224 (398)
T PTZ00413 150 ATIMVMGDHCTRGCRFCSVKTSR-KPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDR----DDLPDGGASHVARCVELIKE 224 (398)
T ss_pred eEeeecCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcC----CCCChhhHHHHHHHHHHHHc
Confidence 34566789999999999997533 23456899999999988889999988887541 122 1 356777777765
Q ss_pred hCCCCCCceEEEeecCCCCh-hhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCC-CCCcCc
Q 019874 269 ELPPDGSTMLRIGMTNPPFI-LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK-IVPTKS 331 (334)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i-~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R-~~t~e~ 331 (334)
..| .+.+..+-|+.. +.+. |..|++ +|...+|--+|+ +++....++. +++.++
T Consensus 225 ~~p-----~~~IevligDf~g~~e~--l~~L~e--AG~dvynHNLET-v~rLyp~VRt~~atYe~ 279 (398)
T PTZ00413 225 SNP-----ELLLEALVGDFHGDLKS--VEKLAN--SPLSVYAHNIEC-VERITPYVRDRRASYRQ 279 (398)
T ss_pred cCC-----CCeEEEcCCccccCHHH--HHHHHh--cCCCEEeccccc-CHhHHHHHccCcCCHHH
Confidence 323 233434445432 3433 677775 589999999999 9999999995 566543
No 121
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.53 E-value=0.0011 Score=64.67 Aligned_cols=120 Identities=15% Similarity=0.302 Sum_probs=74.9
Q ss_pred cceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHH----CCCcEEEEeeccCCCCCCCCC--CCHHHHH
Q 019874 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIG--VNLPILL 263 (334)
Q Consensus 190 ~~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~----~G~kei~l~~~d~~~yg~d~~--~~l~~Ll 263 (334)
......|.++.||+.+|.||..+.. |..|..++++|++++..... .++..|+|.| +|..+- +.+.+++
T Consensus 97 ~~~t~cvSsq~GC~l~C~FC~t~~~-G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmG-----mGEPL~N~d~v~~~l 170 (348)
T PRK14467 97 DHLTLCVSSQVGCAVGCKFCATAKD-GLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMG-----MGEPLANYENVRKAV 170 (348)
T ss_pred CCcEEEEEcCCCCCCcCcCCCCCCC-CCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEc-----cChhhcCHHHHHHHH
Confidence 3467899999999999999998743 65688999999999976543 3578888876 333221 2345556
Q ss_pred HHHHHhCCCCCC----ceEEEeecCCCChhhhHHHHHHHHhCC--CCCCeEEEccCCcCHHHHHHhCC
Q 019874 264 NAIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHP--CVYSFLHVPVQSGSDAVLSVSQK 325 (334)
Q Consensus 264 ~~l~~~i~~~~~----~~ir~~~~~p~~i~~~l~~l~~l~~~~--~g~~~l~igiQSgsd~vLk~M~R 325 (334)
+.+... .|+ ..+.+++. - +-+.+ ..++... ..+ .|.+.+-|.+++.-+.+-.
T Consensus 171 ~~l~~~---~gl~~~~r~itvsT~-G--~~~~i---~~l~~~~~l~~v-~LalSLha~~~e~r~~i~p 228 (348)
T PRK14467 171 QIMTSP---WGLDLSKRRITISTS-G--IIHQI---KRMAEDPVMPEV-NLAVSLNASSQKLRERIMP 228 (348)
T ss_pred HHHcCh---hccCcCCCcEEEECC-C--ChhHH---HHHHhhccccCe-eEEEECCCCCHHHHHHhcC
Confidence 655321 122 25666432 1 11222 2222211 122 4669999999999877644
No 122
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.53 E-value=0.0009 Score=65.16 Aligned_cols=126 Identities=15% Similarity=0.230 Sum_probs=79.5
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHH---CCCcEEEEeeccCCCCCCCCCCCHHHHHHHHH
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~---~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (334)
..+..|.++-||+.+|+||.... .|-.|.....+|++++-.+.+ ..+.+|+|.| +|..+ .++..+++.+.
T Consensus 104 ~~t~CvSsQvGC~m~C~FC~tg~-~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmG-----mGEPL-~N~d~V~~~~~ 176 (342)
T PRK14465 104 RKTICISSQIGCTLNCKFCATAK-LEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMG-----MGEPM-HNYFNVIRAAS 176 (342)
T ss_pred ceEEEEEecCCCCCCCCCCcCCC-CCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEc-----CCcch-hhHHHHHHHHH
Confidence 35678999999999999999865 355688899999999976554 3578888876 55443 23334444432
Q ss_pred HhCCC-----CCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHh---CCCCCcCc
Q 019874 268 AELPP-----DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVS---QKIVPTKS 331 (334)
Q Consensus 268 ~~i~~-----~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M---~R~~t~e~ 331 (334)
.+.. -+..+++++ ++- +.+.+ ..++... .--.|.|++-+.+++..... ++.|..++
T Consensus 177 -~l~~~~~~~~~~r~itvS-T~G--~~~~i---~~l~~~~-~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ 240 (342)
T PRK14465 177 -ILHDPDAFNLGAKRITIS-TSG--VVNGI---RRFIENK-EPYNFAISLNHPDPNGRLQIMDIEEKFPLEE 240 (342)
T ss_pred -HHhChhhhcCCCCeEEEe-CCC--chHHH---HHHHhhc-cCceEEEEecCCChhhcceEeeccccCCHHH
Confidence 1110 012355553 332 22333 3344321 11368899999999987766 67776554
No 123
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=97.45 E-value=0.0013 Score=63.85 Aligned_cols=131 Identities=18% Similarity=0.281 Sum_probs=80.9
Q ss_pred ccceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHC-C------CcEEEEeeccCCCCCCCCCCCHHH
Q 019874 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G------VKEVWLSSEDTGAYGRDIGVNLPI 261 (334)
Q Consensus 189 ~~~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~-G------~kei~l~~~d~~~yg~d~~~~l~~ 261 (334)
.......|.++-||+-.|+||.+... |..|-.+..+|++++....+. | +..|+|-| -|..+ .++..
T Consensus 98 ~~r~tlCVSsQvGC~~~C~FCaTg~~-G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MG-----MGEPl-~N~dn 170 (349)
T COG0820 98 KDRNTLCVSSQVGCPVGCTFCATGQG-GLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMG-----MGEPL-LNLDN 170 (349)
T ss_pred cCCceEEEecCCCcCCCCCeeccccc-cceeccCHHHHHHHHHHHHHhcCccccceeeeEEEec-----CCchh-hhHHH
Confidence 34567789999999999999998643 778999999999999987642 2 34566644 23221 23434
Q ss_pred HHHHH---HHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHh---CCCCCcCcc
Q 019874 262 LLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVS---QKIVPTKSV 332 (334)
Q Consensus 262 Ll~~l---~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M---~R~~t~e~v 332 (334)
+...+ .... ..++.. |..++.+..+.+.+ ..++. ..+--.|-|.+.|.+++....+ ||.|+.+++
T Consensus 171 V~~a~~i~~~~~-G~~ls~-R~iTvSTsGi~~~I---~~l~~-~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l 241 (349)
T COG0820 171 VVKALEIINDDE-GLGLSK-RRITVSTSGIVPRI---RKLAD-EQLGVALAISLHAPNDELRDQLMPINKKYPIEEL 241 (349)
T ss_pred HHHHHHhhcCcc-cccccc-eEEEEecCCCchhH---HHHHh-hcCCeEEEEecCCCCHHHHhhhhccccCCCHHHH
Confidence 44443 2111 012222 22233444455555 33442 1244579999999999986554 788877654
No 124
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=97.45 E-value=0.0013 Score=63.38 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=72.2
Q ss_pred cceeeeeeccCCCCCCCccccccccCC-c-cccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHH
Q 019874 190 NKFVEILPINVGCLGACTYCKTKHARG-H-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (334)
Q Consensus 190 ~~~~~~v~isrGC~~~CsfC~ip~~rG-~-~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (334)
.+....++++.+|+.+|.||....... . .+..+++++++.++. .|+..|.|+|.+...+ .++.++++.+.
T Consensus 26 ~Pl~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~e---~g~~~V~i~GGEPLL~-----pdl~eiv~~~~ 97 (318)
T TIGR03470 26 FPLVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVDE---CGAPVVSIPGGEPLLH-----PEIDEIVRGLV 97 (318)
T ss_pred CCCEEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHHH---cCCCEEEEeCcccccc-----ccHHHHHHHHH
Confidence 355678999999999999997543221 1 234688888776653 5888999988665443 46888999886
Q ss_pred HhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcC
Q 019874 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316 (334)
Q Consensus 268 ~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgs 316 (334)
+. + ..+-+ .+|...+++.+ ..++.+ +...+.|.+.+..
T Consensus 98 ~~----g-~~v~l-~TNG~ll~~~~---~~l~~~--~~~~i~VSLDG~~ 135 (318)
T TIGR03470 98 AR----K-KFVYL-CTNALLLEKKL---DKFEPS--PYLTFSVHLDGLR 135 (318)
T ss_pred Hc----C-CeEEE-ecCceehHHHH---HHHHhC--CCcEEEEEEecCc
Confidence 52 3 34443 47777666544 445543 4567888888754
No 125
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00029 Score=64.17 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=49.2
Q ss_pred eeeccCCCCCCCccccccccCC-----ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHH
Q 019874 195 ILPINVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (334)
Q Consensus 195 ~v~isrGC~~~CsfC~ip~~rG-----~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (334)
+|+. -|||++|.||..++++. .+...+.++|+++++.+. .+.+.|.|||.+-..+ ..+.+|++.+.+
T Consensus 26 FVR~-~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTGGEP~~~-----~~l~~Ll~~l~~ 97 (212)
T COG0602 26 FVRF-AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTGGEPLLQ-----PNLLELLELLKR 97 (212)
T ss_pred EEEc-CCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeCCcCCCc-----ccHHHHHHHHHh
Confidence 4433 39999999999987653 367789999999999763 2345899999665221 367888888864
No 126
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.37 E-value=0.0027 Score=62.28 Aligned_cols=127 Identities=17% Similarity=0.290 Sum_probs=80.7
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHH----C-------------CCcEEEEeeccCCCCCC
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----D-------------GVKEVWLSSEDTGAYGR 253 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~----~-------------G~kei~l~~~d~~~yg~ 253 (334)
..+..|.++-||+..|.||.+... |-.|..++.+|++++..+.+ . .++.|+|-| -|.
T Consensus 106 r~TlCvSSQvGC~mgC~FCaTG~~-G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMG-----MGE 179 (371)
T PRK14461 106 RATVCVSTQAGCGMGCVFCATGTL-GLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMG-----MGE 179 (371)
T ss_pred CceEEEEccCCccCCCCcccCCCC-CcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEc-----cCC
Confidence 466899999999999999987544 66899999999999976642 1 156677654 233
Q ss_pred CCCCCHHHHHHHHHHhCC-CC----CCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHh---CC
Q 019874 254 DIGVNLPILLNAIVAELP-PD----GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVS---QK 325 (334)
Q Consensus 254 d~~~~l~~Ll~~l~~~i~-~~----~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M---~R 325 (334)
.+ .++..+++.|.- +- .. +..+|.+++.= +.+. +.++++.. .--.|-|++=+.+|++.+.+ ||
T Consensus 180 PL-~NydnV~~ai~i-l~d~~g~~is~R~ITVST~G---ivp~---I~~la~~~-~~v~LAiSLHA~~~e~R~~lmPin~ 250 (371)
T PRK14461 180 PF-ANYDRWWQAVER-LHDPQGFNLGARSMTVSTVG---LVKG---IRRLANER-LPINLAISLHAPDDALRSELMPVNR 250 (371)
T ss_pred ch-hhHHHHHHHHHH-hcCccccCcCCCceEEEeec---chhH---HHHHHhcc-cCceEEEEeCCCCHHHHHHhcCccc
Confidence 22 244556665532 21 00 12345544331 2333 34455432 23468899999999987754 68
Q ss_pred CCCcCcc
Q 019874 326 IVPTKSV 332 (334)
Q Consensus 326 ~~t~e~v 332 (334)
.|..+++
T Consensus 251 ~ypl~eL 257 (371)
T PRK14461 251 RYPIADL 257 (371)
T ss_pred CCCHHHH
Confidence 8877654
No 127
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=97.34 E-value=0.00064 Score=66.87 Aligned_cols=75 Identities=20% Similarity=0.379 Sum_probs=55.2
Q ss_pred eeeeccCCCCCCCccccccccCCc--cccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCC
Q 019874 194 EILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (334)
Q Consensus 194 ~~v~isrGC~~~CsfC~ip~~rG~--~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (334)
.+|..+.=|.++|+||......+. -...++|+|.++++.+.+.|++||.|+|..--.++. ..+.++++.|.+..|
T Consensus 61 ~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~---~y~~~~~~~ik~~~p 137 (370)
T COG1060 61 RNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSL---EYYEELFRTIKEEFP 137 (370)
T ss_pred ecCCcchhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcch---HHHHHHHHHHHHhCc
Confidence 356667779999999997655432 236799999999999999999999998744322221 356678888876555
No 128
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=97.28 E-value=0.0043 Score=52.33 Aligned_cols=102 Identities=15% Similarity=0.237 Sum_probs=70.9
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~ 124 (334)
.++.+-|.|....-.=...++..|+..||++++. .++||+|+|++ ......+.+..++++++++
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSs--l~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSS--LAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcC--chhhhHHHHHHHHHHHHhc
Confidence 4788888888777777888999999999999764 35899999944 3333334567777777776
Q ss_pred C---CCEEEEccccCCC-hhhhccCccEEEcCCChHHHHHHHHH
Q 019874 125 K---KPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEE 164 (334)
Q Consensus 125 ~---~~VVv~GC~a~~~-~~~~~~~~d~vvG~~e~~~i~e~l~~ 164 (334)
+ .+|++||-.+... .+..+..+|.+++++. .+.+++..
T Consensus 81 g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt--~~~~i~~~ 122 (132)
T TIGR00640 81 GRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGT--PIPESAIF 122 (132)
T ss_pred CCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCC--CHHHHHHH
Confidence 4 4788998666432 2334556788887765 45555543
No 129
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.27 E-value=0.00086 Score=65.30 Aligned_cols=124 Identities=19% Similarity=0.248 Sum_probs=76.5
Q ss_pred eeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHC-CCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCC
Q 019874 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~-G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (334)
...|.++-||+..|.||..... |-.|..++++|++++..+.+. .+++|+|.| .|..+ .++.++++.+.. +.
T Consensus 97 t~CvSsQvGC~~~C~FC~tg~~-g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmG-----mGEPl-~N~d~vl~ai~~-l~ 168 (344)
T PRK14464 97 GLCVSTQVGCAVGCVFCMTGRS-GLLRQLGSAEIVAQVVLARRRRAVKKVVFMG-----MGEPA-HNLDNVLEAIDL-LG 168 (344)
T ss_pred cEEEEccCCcCCCCCcCcCCCC-CCCCCCCHHHHHHHHHHHHhcCCCCEEEEec-----cCccc-CCHHHHHHHHHH-hh
Confidence 5789999999999999987543 557888999999999987763 689999987 34433 344555555321 11
Q ss_pred C-C--CCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhC---CCCCcCc
Q 019874 272 P-D--GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQ---KIVPTKS 331 (334)
Q Consensus 272 ~-~--~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~---R~~t~e~ 331 (334)
. . +...+-+++.-. .+. +..++.. ..-..|-+.+-|.+++..+.+. |.|+.++
T Consensus 169 ~~~~i~~r~itiST~G~---~~~---i~rL~~~-~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~e 227 (344)
T PRK14464 169 TEGGIGHKNLVFSTVGD---PRV---FERLPQQ-RVKPALALSLHTTRAELRARLLPRAPRIAPEE 227 (344)
T ss_pred chhcCCCceEEEecccC---chH---HHHHHHh-cCChHHHHHhcCCChhHhheeCCccCCCCHHH
Confidence 0 0 223444433211 111 2223321 2223566788888888876654 4555544
No 130
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=97.24 E-value=0.00098 Score=57.24 Aligned_cols=67 Identities=16% Similarity=0.108 Sum_probs=49.1
Q ss_pred eeeccCCCCCCCccccccccCCc--cccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHH
Q 019874 195 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (334)
Q Consensus 195 ~v~isrGC~~~CsfC~ip~~rG~--~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (334)
.+-.-.|||.+|.||..|..... -+..+.++++++|+.+. ..+.-|.|+|.+ ..+ ..+.+|++.+.+
T Consensus 18 ~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE-l~~-----~~l~~ll~~lk~ 86 (147)
T TIGR02826 18 LAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE-WNR-----EALLSLLKIFKE 86 (147)
T ss_pred EEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh-cCH-----HHHHHHHHHHHH
Confidence 34445699999999999866322 34689999999998865 345789999977 322 357888888865
No 131
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.21 E-value=0.0025 Score=60.86 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=83.9
Q ss_pred eeeccCCCCC----CCccccccccCCccccCCHHHHHHHHHHHHHC---CCcE--E-EEeeccCCCCCCCC--C-CCHHH
Q 019874 195 ILPINVGCLG----ACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKE--V-WLSSEDTGAYGRDI--G-VNLPI 261 (334)
Q Consensus 195 ~v~isrGC~~----~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~---G~ke--i-~l~~~d~~~yg~d~--~-~~l~~ 261 (334)
.|--++||-+ .|++|.++.- +.-..-|.|++++++....+. -..+ | .||+.. |=.+. + +....
T Consensus 50 vILrT~GC~w~~~~gC~MCgY~~d-~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGS---FLD~~EVP~e~R~~ 125 (358)
T COG1244 50 VILRTRGCRWYREGGCYMCGYPAD-SAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGS---FLDPEEVPREARRY 125 (358)
T ss_pred EEEecCCcceeccCCcceeccccc-cCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccc---cCChhhCCHHHHHH
Confidence 4445799983 3999998754 225667899999999887652 1222 2 355533 32221 1 23456
Q ss_pred HHHHHHHhCCCCCCceEEEeecCCCChhhhH-HHHHHHHhCCCCCCeEEEccCCcCHHHH-HHhCCCCCcCcc
Q 019874 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVL-SVSQKIVPTKSV 332 (334)
Q Consensus 262 Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l-~~l~~l~~~~~g~~~l~igiQSgsd~vL-k~M~R~~t~e~v 332 (334)
+++.|.+ .+ .++.+=+ -.+|.+++++- .++..+... .---+-||+||.+|++. ..||||.|.+++
T Consensus 126 Il~~is~-~~--~v~~vvv-ESRpE~I~eE~l~e~~~il~g--k~~EvaIGLETanD~ire~sINKGftF~df 192 (358)
T COG1244 126 ILERISE-ND--NVKEVVV-ESRPEFIREERLEEITEILEG--KIVEVAIGLETANDKIREDSINKGFTFEDF 192 (358)
T ss_pred HHHHHhh-cc--ceeEEEe-ecCchhcCHHHHHHHHHhhCC--ceEEEEEecccCcHHHHHHhhhcCCcHHHH
Confidence 7777765 33 4667654 57999998654 444444321 23468999999999997 799999998775
No 132
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.16 E-value=0.0042 Score=61.21 Aligned_cols=126 Identities=13% Similarity=0.237 Sum_probs=75.2
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHH----------CCCcEEEEeeccCCCCCCCCC--CC
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----------DGVKEVWLSSEDTGAYGRDIG--VN 258 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~----------~G~kei~l~~~d~~~yg~d~~--~~ 258 (334)
..+..|.++-||+.+|.||..+.. |-.|..++++|++++..... .+++.|+|.| .|..+- +.
T Consensus 102 ~~t~CvSsQvGC~~~C~FC~t~~~-g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mG-----mGEPL~N~d~ 175 (372)
T PRK11194 102 RATLCVSSQVGCALECKFCSTAQQ-GFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG-----MGEPLLNLNN 175 (372)
T ss_pred CeeEEEecCCCCCCcCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEec-----CCccccCHHH
Confidence 466789999999999999998853 55688999999999876542 1278888876 343321 22
Q ss_pred HHHHHHHHHHhCCC-CCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhC---CCCCcC
Q 019874 259 LPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQ---KIVPTK 330 (334)
Q Consensus 259 l~~Ll~~l~~~i~~-~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~---R~~t~e 330 (334)
+.+.++.+.+.... -+..++.+++. - +.+.+ ..++.. .--.|.+.+=+.+++.-+.+- +.|..+
T Consensus 176 v~~al~~l~~~~g~~i~~r~itVsTs-G--~~~~i---~~l~~~--~d~~LaiSLha~d~e~R~~lmPin~~~~l~ 243 (372)
T PRK11194 176 VVPAMEIMLDDFGFGLSKRRVTLSTS-G--VVPAL---DKLGDM--IDVALAISLHAPNDELRDEIVPINKKYNIE 243 (372)
T ss_pred HHHHHHHHhhhhccCcCCCeEEEECC-C--CchHH---HHHHhc--cCeEEEeeccCCCHHHHHHhcCCcccccHH
Confidence 34555555432100 01235666432 1 22333 334432 113566778888888866543 445443
No 133
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.15 E-value=0.0035 Score=61.11 Aligned_cols=118 Identities=14% Similarity=0.255 Sum_probs=71.4
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHC---CCcEEEEeeccCCCCCCCC--CCCHHHHHHH
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDI--GVNLPILLNA 265 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~---G~kei~l~~~d~~~yg~d~--~~~l~~Ll~~ 265 (334)
...+.|.++-|||.+|.||..+. -|..|..++++|++++...... ....+++.| -|..+ .+.+.++++.
T Consensus 100 ~~t~cvSsqvGC~~~C~FC~tg~-~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mg-----gGEPLln~d~v~~~l~~ 173 (342)
T PRK14454 100 GNSICVSTQVGCRMGCKFCASTI-GGMVRNLTAGEMLDQILAAQNDIGERISNIVLMG-----SGEPLDNYENVMKFLKI 173 (342)
T ss_pred CCEEEEEcCCCCCCcCCcCCCCC-CCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEEC-----CchhhcCHHHHHHHHHH
Confidence 45689999999999999998763 3557889999999999876541 234555432 13222 1235566666
Q ss_pred HHHhCCCCCC----ceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhC
Q 019874 266 IVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQ 324 (334)
Q Consensus 266 l~~~i~~~~~----~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~ 324 (334)
+.+.. |+ ..+.+++ .- +.+.+ ..++..... -.+-+.+=+.+++..+.+.
T Consensus 174 l~~~~---gi~~~~r~itvsT-sG--~~p~i---~~l~~~~~~-~~laisLka~d~e~r~~l~ 226 (342)
T PRK14454 174 VNSPY---GLNIGQRHITLST-CG--IVPKI---YELADENLQ-ITLAISLHAPNDELRKKMM 226 (342)
T ss_pred Hhccc---ccCcCCCceEEEC-cC--ChhHH---HHHHhhccc-ceEEEecCCCCHHHHHHhc
Confidence 64311 22 2455543 11 11222 333432112 2378999999999877654
No 134
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=97.09 E-value=0.0044 Score=59.96 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=72.4
Q ss_pred ccCCCCCCCccccccccCC------ccccCCHHHHHHHHHHHHH---CC-----------------CcEEEEeeccCCCC
Q 019874 198 INVGCLGACTYCKTKHARG------HLGSYTVESLVGRVRTVIA---DG-----------------VKEVWLSSEDTGAY 251 (334)
Q Consensus 198 isrGC~~~CsfC~ip~~rG------~~rsr~~e~Iv~Ei~~l~~---~G-----------------~kei~l~~~d~~~y 251 (334)
+..||+++|.||..+.... ..+.-+|++|++++..... .| .+.+.|++ .
T Consensus 64 ~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl-----~ 138 (322)
T PRK13762 64 VVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISL-----S 138 (322)
T ss_pred hhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeC-----C
Confidence 4579999999999875432 1356789999999976532 12 23455542 2
Q ss_pred CCCC-CCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCC
Q 019874 252 GRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKI 326 (334)
Q Consensus 252 g~d~-~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~ 326 (334)
|..+ ...|.+|++.+.+. |+ .+.+ .+|-. +.+ . +..+. .+...+.+.+.+.+++..+.+.|+
T Consensus 139 GEPlL~p~l~eli~~~k~~----Gi-~~~L-~TNG~-~~e-~--l~~L~---~~~d~i~VSLda~~~e~~~~i~~~ 201 (322)
T PRK13762 139 GEPTLYPYLPELIEEFHKR----GF-TTFL-VTNGT-RPD-V--LEKLE---EEPTQLYVSLDAPDEETYKKINRP 201 (322)
T ss_pred ccccchhhHHHHHHHHHHc----CC-CEEE-ECCCC-CHH-H--HHHHH---hcCCEEEEEccCCCHHHHHHHhCC
Confidence 3332 23688899888652 44 4444 45553 222 2 45552 246789999999999999999875
No 135
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.07 E-value=0.0038 Score=61.12 Aligned_cols=124 Identities=15% Similarity=0.268 Sum_probs=75.2
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHC------CCcEEEEeeccCCCCCCCCC--CCHHHH
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIG--VNLPIL 262 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~------G~kei~l~~~d~~~yg~d~~--~~l~~L 262 (334)
.....|..+.|||.+|.||..+.. |..|..++++|++++..+... ....|+|.| .|..+- +.+.++
T Consensus 109 r~t~CvSsQvGC~~~C~FCatg~~-g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmG-----mGEPL~N~d~v~~~ 182 (356)
T PRK14462 109 KYTVCVSSQVGCKVGCAFCLTAKG-GFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMG-----MGEPLDNLDNVSKA 182 (356)
T ss_pred CceEeeeccccCCCCCccCCCCCC-CCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeC-----CcccccCHHHHHHH
Confidence 456789999999999999988743 667899999999999865431 134566653 232221 234566
Q ss_pred HHHHHHhCCCCCC----ceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHh---CCCCCcC
Q 019874 263 LNAIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVS---QKIVPTK 330 (334)
Q Consensus 263 l~~l~~~i~~~~~----~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M---~R~~t~e 330 (334)
++.+.+. . |+ .++.+++. - +.+.+ ..++..+ .--.|.+.+=|.+++..+.+ ++.|..+
T Consensus 183 l~~l~~~-~--Gl~~~~r~itVsTs-G--~~~~i---~~L~~~d-l~v~LaiSLha~d~e~r~~l~pv~~~~~l~ 247 (356)
T PRK14462 183 IKIFSEN-D--GLAISPRRQTISTS-G--LASKI---KKLGEMN-LGVQLAISLHAVDDELRSELMPINKAYNIE 247 (356)
T ss_pred HHHhcCc-c--CCCcCCCceEEECC-C--ChHHH---HHHHhcC-CCeEEEEECCCCCHHHHHHhCCCCccCCHH
Confidence 6665431 0 22 24455332 1 22333 4444432 11457788999999997765 4555444
No 136
>PRK09234 fbiC FO synthase; Reviewed
Probab=97.04 E-value=0.002 Score=69.59 Aligned_cols=117 Identities=19% Similarity=0.264 Sum_probs=73.2
Q ss_pred eeeeccCCCCCCCccccccccCCc--cccCCHHHHHHHHHHHHHCCCcEEEEeecc-CCC-----------CCCCC-CCC
Q 019874 194 EILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSED-TGA-----------YGRDI-GVN 258 (334)
Q Consensus 194 ~~v~isrGC~~~CsfC~ip~~rG~--~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d-~~~-----------yg~d~-~~~ 258 (334)
.+|..+..|.++|.||......+. ....++|+|++.++...+.|++|+.|++.+ ... +|.+. -+.
T Consensus 73 ~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey 152 (843)
T PRK09234 73 VFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDY 152 (843)
T ss_pred EEecCCCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHH
Confidence 357779999999999998654342 345799999999999999999999888633 211 11110 023
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHH
Q 019874 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSV 322 (334)
Q Consensus 259 l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~ 322 (334)
+.++++.+.++. +.. -.+++..++. +++..|++. +.. .++-+|+.+++..+.
T Consensus 153 ~~~~~~~ik~~~---gl~----p~i~~G~ls~--~E~~~Lk~~--g~s-~gl~lEt~~~~l~~~ 204 (843)
T PRK09234 153 VRAMAIRVLEET---GLL----PHLNPGVMSW--SELARLKPV--APS-MGMMLETTSRRLFEE 204 (843)
T ss_pred HHHHHHHHHHhc---CCC----ceeeeCCCCH--HHHHHHHHh--cCc-CCCCHHHHHHHHHHh
Confidence 445555554432 211 1244555565 336666653 343 567788877776543
No 137
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=96.97 E-value=0.0016 Score=53.14 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC---CCCEEEEccccCCC
Q 019874 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA---KKPLVVAGCVPQGS 138 (334)
Q Consensus 76 e~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~---~~~VVv~GC~a~~~ 138 (334)
-.++..|++.||+.... ..++|+|.+ ||+..... .....+.+++++ +.+|++||.+++..
T Consensus 17 ~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~pdiV~i-S~~~~~~~--~~~~~~~~~~~~~p~~~~ivvGG~~~t~~ 93 (125)
T cd02065 17 NIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGL-SALSTTHM--EAMKLVIEALKELGIDIPVVVGGAHPTAD 93 (125)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEE-ecchHhHH--HHHHHHHHHHHhcCCCCeEEEeCCcCCcc
Confidence 34556667777766421 247999999 44544332 233334444332 57899999999999
Q ss_pred hhhhccCcc-EEEcCCChHHHHHHHH
Q 019874 139 RDLKELEGV-SIVGVQQIDRVVEVVE 163 (334)
Q Consensus 139 ~~~~~~~~d-~vvG~~e~~~i~e~l~ 163 (334)
|+. ...| +++|+++. .++++++
T Consensus 94 ~~~--~~~d~~~~Ge~e~-~~~~l~~ 116 (125)
T cd02065 94 PEE--PKVDAVVIGEGEY-AGPALLE 116 (125)
T ss_pred ccc--cccceeeeCCeEE-Eccccch
Confidence 877 4467 68899984 5666654
No 138
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=96.95 E-value=0.0099 Score=56.59 Aligned_cols=111 Identities=17% Similarity=0.234 Sum_probs=74.6
Q ss_pred CCCCCCcccccccc----CCccccCCHHHHHHHHHHHHHC------CCcEEEEeec-cCCCCCCCCCCCHHHHHHHHHHh
Q 019874 201 GCLGACTYCKTKHA----RGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSE-DTGAYGRDIGVNLPILLNAIVAE 269 (334)
Q Consensus 201 GC~~~CsfC~ip~~----rG~~rsr~~e~Iv~Ei~~l~~~------G~kei~l~~~-d~~~yg~d~~~~l~~Ll~~l~~~ 269 (334)
=|.++|.||..... .++-...+.++|.++++.+... .++.+.|.+. .-+.| .+|.+|++.+.+
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy-----~~L~elI~~~k~- 106 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY-----PNLGELIEEIKK- 106 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcccc-----cCHHHHHHHHHh-
Confidence 49999999987322 2233456789999999998764 3566666531 12223 579999999976
Q ss_pred CCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCc
Q 019874 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPT 329 (334)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~ 329 (334)
+ +...+-+ -+|... ++. +..|. ....+.+.+.+.+.+.+++++|++..
T Consensus 107 ~---g~~~tfl-vTNgsl--pdv--~~~L~----~~dql~~sLdA~~~~~~~~InRP~~~ 154 (296)
T COG0731 107 R---GKKTTFL-VTNGSL--PDV--LEELK----LPDQLYVSLDAPDEKTFRRINRPHKK 154 (296)
T ss_pred c---CCceEEE-EeCCCh--HHH--HHHhc----cCCEEEEEeccCCHHHHHHhcCCCCc
Confidence 3 4333322 345442 333 44443 24789999999999999999999754
No 139
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=96.93 E-value=0.0033 Score=52.39 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=54.7
Q ss_pred cCCCCCCCccccccccCCc-cccCCHHHHHHHHHHHH-HCCCcEEEEeeccCCCC-CCCCCCCHHHHHHHHHHhCCCCCC
Q 019874 199 NVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVI-ADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGS 275 (334)
Q Consensus 199 srGC~~~CsfC~ip~~rG~-~rsr~~e~Iv~Ei~~l~-~~G~kei~l~~~d~~~y-g~d~~~~l~~Ll~~l~~~i~~~~~ 275 (334)
+.||+.+|.||..+..... ....-..++++++-..+ +.+...|.|+|.+...+ .. ..+.++++.+.+.. .
T Consensus 12 t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGEPll~~~~---~~l~~i~~~~k~~~----~ 84 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVLTGGEPLLHENY---DELLEILKYIKEKF----P 84 (139)
T ss_dssp EC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECSTGGGHHSH---HHHHHHHHHHHHTT-----
T ss_pred cCcccccCcCcCCcccCcccccccccchhhhhhhhHHhcCCceEEEEcCCCeeeeccH---hHHHHHHHHHHHhC----C
Confidence 7789999999987655432 11222355555554433 57899999998665541 11 35778888887642 2
Q ss_pred ceEEEeecCCCChhhhHH-HHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCc
Q 019874 276 TMLRIGMTNPPFILEHLK-EIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKS 331 (334)
Q Consensus 276 ~~ir~~~~~p~~i~~~l~-~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~ 331 (334)
..+.+ .++...+.+... .+..+... .. -.+.++.. .+..-.....|+-+.+.
T Consensus 85 ~~~~~-~tng~~~~~~~~~~~~~~~~~-~~-vsvd~~~~-~~~~~~~~~~~gs~~q~ 137 (139)
T PF13353_consen 85 KKIII-LTNGYTLDELLDELIEELLDE-ID-VSVDGPFD-ENKEDRHLRGRGSSNQR 137 (139)
T ss_dssp SEEEE-EETT--HHHHHHHHHHHHHHT-ES-EEEE---S-SHHHHH--HHCSS----
T ss_pred CCeEE-EECCCchhHHHhHHHHhccCc-cE-EEEEEech-hhccccccCccCccccc
Confidence 23333 345544443322 13344432 11 25556666 33333444455544443
No 140
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=96.89 E-value=0.0059 Score=59.08 Aligned_cols=125 Identities=17% Similarity=0.284 Sum_probs=77.5
Q ss_pred eeeeeccCCC-CCCCccccccccC--C--ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHH
Q 019874 193 VEILPINVGC-LGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (334)
Q Consensus 193 ~~~v~isrGC-~~~CsfC~ip~~r--G--~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (334)
...|.++-|| |..|.||...... | +...+++|+|+++++...+.|.-.+.+...=-+ +|++. ..+.+.++.+.
T Consensus 51 ~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~~-~~i~~~v~~Vk 128 (335)
T COG0502 51 STLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRDM-EEVVEAIKAVK 128 (335)
T ss_pred EEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccC-CCccH-HHHHHHHHHHH
Confidence 3456666665 9999999986422 3 245689999999999999999666655432111 22221 34555566665
Q ss_pred HhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCc
Q 019874 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKS 331 (334)
Q Consensus 268 ~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~ 331 (334)
+.. +. .+ .++...++++- +..+++ +|..+..-=+++ |++.-+.+-=++|.++
T Consensus 129 ~~~---~l-e~---c~slG~l~~eq--~~~L~~--aGvd~ynhNLeT-s~~~y~~I~tt~t~ed 180 (335)
T COG0502 129 EEL---GL-EV---CASLGMLTEEQ--AEKLAD--AGVDRYNHNLET-SPEFYENIITTRTYED 180 (335)
T ss_pred Hhc---Cc-HH---hhccCCCCHHH--HHHHHH--cChhheeccccc-CHHHHcccCCCCCHHH
Confidence 333 21 12 22333445433 566665 588999999999 8887776655555443
No 141
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=96.74 E-value=0.0046 Score=50.28 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=40.3
Q ss_pred ccCCCCCCCccccccccCC--ccccCCHHHHHHHHHHHHHCCC--cEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCC
Q 019874 198 INVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGV--KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (334)
Q Consensus 198 isrGC~~~CsfC~ip~~rG--~~rsr~~e~Iv~Ei~~l~~~G~--kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~ 273 (334)
++.+|+.+|.||....... .....+.+++.+.++.+...+. ..|.|+|.+...|- + ...+.++++.+.+..
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~~-~-~~~l~~~i~~~~~~~--- 78 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLLYL-N-PEDLIELIEYLKERG--- 78 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGGST-T-HHHHHHHHCTSTT-----
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCcccc-C-HHHHHHHHHHHHhhC---
Confidence 4689999999999754332 3566788999999988877766 56899886554331 0 012444444443321
Q ss_pred CCceEEEeecCCC
Q 019874 274 GSTMLRIGMTNPP 286 (334)
Q Consensus 274 ~~~~ir~~~~~p~ 286 (334)
....+++ .+|-.
T Consensus 79 ~~~~i~i-~TNg~ 90 (119)
T PF13394_consen 79 PEIKIRI-ETNGT 90 (119)
T ss_dssp ---EEEE-EE-ST
T ss_pred CCceEEE-EeCCe
Confidence 1246665 45544
No 142
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=96.63 E-value=0.026 Score=53.88 Aligned_cols=121 Identities=11% Similarity=0.172 Sum_probs=79.0
Q ss_pred cceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCC-CcEEEEeeccCCCCCCCCCCCHHHHHHHHHH
Q 019874 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG-VKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (334)
Q Consensus 190 ~~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G-~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (334)
.+....+.++.-||.+|.||............+.+++.+-+..+.+.| ..-+.|+|.+... ..++.++++...+
T Consensus 17 ~p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll-----~~d~~ei~~~~~~ 91 (347)
T COG0535 17 PPLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLL-----RPDLLEIVEYARK 91 (347)
T ss_pred CCcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCccc-----cccHHHHHHHHhh
Confidence 355667889999999999997665433134456677776666777778 7777776655432 2467788887764
Q ss_pred hCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHH-HHHhC
Q 019874 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV-LSVSQ 324 (334)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~v-Lk~M~ 324 (334)
. . ...+.+ ++|...++++. +..++. .++.++.+.+++.+++. ....+
T Consensus 92 ~-~---~~~~~~-~TnG~~~~~~~--~~~l~~--~g~~~v~iSid~~~~e~hd~~rg 139 (347)
T COG0535 92 K-G---GIRVSL-STNGTLLTEEV--LEKLKE--AGLDYVSISLDGLDPETHDPIRG 139 (347)
T ss_pred c-C---CeEEEE-eCCCccCCHHH--HHHHHh--cCCcEEEEEecCCChhhhhhhcC
Confidence 2 1 122222 45553355555 555554 47999999999999888 44444
No 143
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=96.48 E-value=0.021 Score=56.92 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=72.2
Q ss_pred CCCccccccccCCccccCCHHHHHHHHHHHHHC---CCcEEEEeec-cCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEE
Q 019874 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSE-DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279 (334)
Q Consensus 204 ~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~---G~kei~l~~~-d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir 279 (334)
..|.||......-.-+..|+++|++|++..... ....|.|+|. +...| ..+.+|++.+.+ . ++ .+.
T Consensus 37 ~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~-----~~l~eLl~~lk~-~---gi-~ta 106 (404)
T TIGR03278 37 KGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY-----PELEELTKGLSD-L---GL-PIH 106 (404)
T ss_pred CCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC-----HHHHHHHHHHHh-C---CC-CEE
Confidence 378899654332223668999999999986542 3466777764 55544 368899999875 2 33 355
Q ss_pred EeecCCC-ChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCC
Q 019874 280 IGMTNPP-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325 (334)
Q Consensus 280 ~~~~~p~-~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R 325 (334)
+.+++-. ..+++. ++.+++ .++..+.+.+.|.++++-+.|..
T Consensus 107 I~~TnG~~l~~~e~--~~~L~~--~gld~v~iSvka~dpe~h~kl~G 149 (404)
T TIGR03278 107 LGYTSGKGFDDPEI--AEFLID--NGVREVSFTVFATDPELRREWMK 149 (404)
T ss_pred EeCCCCcccCCHHH--HHHHHH--cCCCEEEEecccCCHHHHHHHhC
Confidence 5445543 234443 566665 36789999999999999998644
No 144
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=96.42 E-value=0.078 Score=44.84 Aligned_cols=88 Identities=17% Similarity=0.228 Sum_probs=56.6
Q ss_pred HHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC---CCEEEEccc--c
Q 019874 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCV--P 135 (334)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~---~~VVv~GC~--a 135 (334)
-..++..|+++||++++. .++||+|.+++-.-+. ...+.+.+++++++| ++|++||-. +
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~--~~~~~~~~~~l~~~gl~~~~vivGG~~vi~ 95 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHG--EIDCKGLRQKCDEAGLEGILLYVGGNLVVG 95 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccC--HHHHHHHHHHHHHCCCCCCEEEecCCcCcC
Confidence 467888999999999764 4689999997755332 334666677777664 567899943 3
Q ss_pred CC-Chh----hhccCccEEEcCCC-hHHHHHHHHH
Q 019874 136 QG-SRD----LKELEGVSIVGVQQ-IDRVVEVVEE 164 (334)
Q Consensus 136 ~~-~~~----~~~~~~d~vvG~~e-~~~i~e~l~~ 164 (334)
.. .++ +.++.+|.++|++. .+.+.+.|..
T Consensus 96 ~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 96 KQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKK 130 (134)
T ss_pred hhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHH
Confidence 22 221 33456788887665 3444454443
No 145
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=96.41 E-value=0.017 Score=47.13 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=54.4
Q ss_pred HHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC---CCCEEEEccccCC
Q 019874 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA---KKPLVVAGCVPQG 137 (334)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~---~~~VVv~GC~a~~ 137 (334)
--.++..|+..||+++.. ..++|+|+| ||+.+... ..+.++++++++. +.+|++||-+++.
T Consensus 16 ~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~i-S~~~~~~~-~~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 16 KNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGL-SGLLTTHM-TLMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-eccccccH-HHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 346778888889987542 357899999 55544443 4566677777665 4568999998887
Q ss_pred Chhh-hccCccEEEcCCC
Q 019874 138 SRDL-KELEGVSIVGVQQ 154 (334)
Q Consensus 138 ~~~~-~~~~~d~vvG~~e 154 (334)
.++. .+..+|.++..+.
T Consensus 94 ~~~~~~~~G~D~~~~~~~ 111 (119)
T cd02067 94 DFKFLKEIGVDAYFGPAT 111 (119)
T ss_pred hHHHHHHcCCeEEECCHH
Confidence 7764 4556788887664
No 146
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=96.35 E-value=0.023 Score=47.67 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=56.6
Q ss_pred HHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC---CCCEEEEcccc--
Q 019874 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA---KKPLVVAGCVP-- 135 (334)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~---~~~VVv~GC~a-- 135 (334)
-..++..|++.||++++- .++||+|.+++-..+. ...+.+.++++++. +.+|++||-.+
T Consensus 16 kniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~--~~~~~~~~~~l~~~gl~~v~vivGG~~~i~ 93 (128)
T cd02072 16 NKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHG--EIDCKGLREKCDEAGLKDILLYVGGNLVVG 93 (128)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCC--HHHHHHHHHHHHHCCCCCCeEEEECCCCCC
Confidence 456788999999999754 3589999996654332 23455566666555 36799999743
Q ss_pred -CCChh----hhccCccEEEcCCChHHHHHHHHH
Q 019874 136 -QGSRD----LKELEGVSIVGVQQIDRVVEVVEE 164 (334)
Q Consensus 136 -~~~~~----~~~~~~d~vvG~~e~~~i~e~l~~ 164 (334)
+..++ +.++.+|.++|++. .+.+++++
T Consensus 94 ~~d~~~~~~~L~~~Gv~~vf~pgt--~~~~i~~~ 125 (128)
T cd02072 94 KQDFEDVEKRFKEMGFDRVFAPGT--PPEEAIAD 125 (128)
T ss_pred hhhhHHHHHHHHHcCCCEEECcCC--CHHHHHHH
Confidence 22222 34556788999875 45666654
No 147
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.32 E-value=0.068 Score=45.29 Aligned_cols=104 Identities=16% Similarity=0.260 Sum_probs=66.0
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC-
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA- 124 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~- 124 (334)
++-+-|.|.-....=-..++-.|+..||+++.- ..+||+|.+ ||..+. ....+.+.++++++.
T Consensus 5 ~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~l-S~~~~~-~~~~~~~~~~~L~~~~ 82 (137)
T PRK02261 5 TVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILV-SSLYGH-GEIDCRGLREKCIEAG 82 (137)
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-cCcccc-CHHHHHHHHHHHHhcC
Confidence 455555554444445667788899999999753 357999999 444443 345677777777766
Q ss_pred --CCCEEEEccccCC--Chh-----hhccCccEEEc-CCChHHHHHHHHHH
Q 019874 125 --KKPLVVAGCVPQG--SRD-----LKELEGVSIVG-VQQIDRVVEVVEET 165 (334)
Q Consensus 125 --~~~VVv~GC~a~~--~~~-----~~~~~~d~vvG-~~e~~~i~e~l~~~ 165 (334)
+.+|++||-.+.. .+. ..++.+|.|++ ....+.+.+.|.+.
T Consensus 83 ~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~ 133 (137)
T PRK02261 83 LGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKD 133 (137)
T ss_pred CCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHH
Confidence 4679999966432 222 23445687776 44556666666543
No 148
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=95.91 E-value=0.032 Score=48.09 Aligned_cols=67 Identities=21% Similarity=0.211 Sum_probs=41.9
Q ss_pred cCCCCCCCccccccccCCc--cccCC---HHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHh
Q 019874 199 NVGCLGACTYCKTKHARGH--LGSYT---VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (334)
Q Consensus 199 srGC~~~CsfC~ip~~rG~--~rsr~---~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (334)
..|||.+|.||..|..+.. -+..+ +++|+++++... .+..|.|+|.+..... + ...+.++++.+.+.
T Consensus 22 ~~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~--~~~gVt~sGGEPllq~-~-~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 22 VAGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNP--LIDGLTLSGGDPLYPR-N-VEELIELVKKIKAE 93 (154)
T ss_pred ECCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcC--CcCeEEEeChhhCCCC-C-HHHHHHHHHHHHHh
Confidence 3799999999998865421 24466 666666654331 3567999886654321 0 02466777777543
No 149
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=95.91 E-value=0.099 Score=44.59 Aligned_cols=104 Identities=18% Similarity=0.340 Sum_probs=69.4
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~ 123 (334)
..+|-+-++|=.-.-.=...++..|++.||+++.. .+++|+|+|++- -..-..-+-.+++++++
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl--~g~h~~l~~~lve~lre 89 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSL--DGGHLTLVPGLVEALRE 89 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEec--cchHHHHHHHHHHHHHH
Confidence 56777788884444444678999999999998643 478999999442 22233445566777777
Q ss_pred CCC---CEEEEccccCCC-hhhhccCccEEEcCCChHHHHHHHHHH
Q 019874 124 AKK---PLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEET 165 (334)
Q Consensus 124 ~~~---~VVv~GC~a~~~-~~~~~~~~d~vvG~~e~~~i~e~l~~~ 165 (334)
+|. .|++||-.+... ++++++.+|-+++++- .+.+.+.+.
T Consensus 90 ~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt--~~~~~~~~v 133 (143)
T COG2185 90 AGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGT--PIEEALSDL 133 (143)
T ss_pred hCCcceEEeecCccCchhHHHHHHhCcceeeCCCC--CHHHHHHHH
Confidence 763 468888887544 3355666788888764 455555443
No 150
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=95.90 E-value=0.097 Score=51.14 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=64.2
Q ss_pred eeeccCCCCCCCccccccccCC-c----cccCCHHHHHHHHHHHHHC--CCcEEEEeeccCCCCCCCCCCCHHHHHHHHH
Q 019874 195 ILPINVGCLGACTYCKTKHARG-H----LGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (334)
Q Consensus 195 ~v~isrGC~~~CsfC~ip~~rG-~----~rsr~~e~Iv~Ei~~l~~~--G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (334)
.++++.+||.+|.||..+.... . ....+.+.+.+-++.+.+. +...|.|+|........ ..+.++++.+.
T Consensus 8 ~~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~~---~~~~~~~~~~~ 84 (370)
T PRK13758 8 IKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAGL---EFFEELMELQR 84 (370)
T ss_pred EecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccCCh---HHHHHHHHHHH
Confidence 3455689999999998764211 1 1124555555555555543 45567887644433211 12345665554
Q ss_pred HhCCCCCCceEEEe-ecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhC
Q 019874 268 AELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQ 324 (334)
Q Consensus 268 ~~i~~~~~~~ir~~-~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~ 324 (334)
+ ... ....++++ .+|-..++++. ++.+.+. +. .+.|.+.+. +++-..++
T Consensus 85 ~-~~~-~~~~~~~~i~TNG~ll~~~~--~~~l~~~--~~-~v~iSlDg~-~~~hd~~R 134 (370)
T PRK13758 85 K-HNY-KNLKIYNSLQTNGTLIDESW--AKFLSEN--KF-LVGLSMDGP-KEIHNLNR 134 (370)
T ss_pred H-hcc-CCCeEEEEEEecCEecCHHH--HHHHHHc--Cc-eEEEeecCC-HHHhcccc
Confidence 3 210 01122222 46777777766 4555543 44 788999986 45544443
No 151
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=95.81 E-value=0.08 Score=50.69 Aligned_cols=125 Identities=20% Similarity=0.232 Sum_probs=70.6
Q ss_pred eeeeeccCCCCCCCccccccccCCcc-cc----CCHHHHHHHHHHHHH-CCCc-EEEEeeccCCCCCCCC-CCCHH-HHH
Q 019874 193 VEILPINVGCLGACTYCKTKHARGHL-GS----YTVESLVGRVRTVIA-DGVK-EVWLSSEDTGAYGRDI-GVNLP-ILL 263 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG~~-rs----r~~e~Iv~Ei~~l~~-~G~k-ei~l~~~d~~~yg~d~-~~~l~-~Ll 263 (334)
.-.+..-+||.|.|.||......+.. .+ ...+.+++.++.-.. .|.+ ..+.+|.++-.|...- ...+. .++
T Consensus 30 ~y~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~il 109 (297)
T COG1533 30 DYTLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKIL 109 (297)
T ss_pred ceecCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHH
Confidence 34577889999999999987665543 22 233447777776543 3443 3445566655564321 11222 233
Q ss_pred HHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCC
Q 019874 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325 (334)
Q Consensus 264 ~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R 325 (334)
+-+.+ ....+.+. +--..+..+++.|..++. .+.-.+.+.+-+.+.++-+.+--
T Consensus 110 ei~~~-----~~~~v~I~-TKS~lv~RDld~l~~~~~--~~~v~V~~Sitt~d~~l~k~~EP 163 (297)
T COG1533 110 EILLK-----YGFPVSIV-TKSALVLRDLDLLLELAE--RGKVRVAVSITTLDEELAKILEP 163 (297)
T ss_pred HHHHH-----cCCcEEEE-ECCcchhhhHHHHHhhhh--ccceEEEEEeecCcHHHHHhcCC
Confidence 33322 23456664 333334455555666553 34457888888888777776643
No 152
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=95.45 E-value=0.073 Score=50.41 Aligned_cols=62 Identities=26% Similarity=0.376 Sum_probs=44.2
Q ss_pred cCCCCCCCcccccccc--CCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHH
Q 019874 199 NVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (334)
Q Consensus 199 srGC~~~CsfC~ip~~--rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (334)
--||+++|-||.-.-+ .|.-+...|+++.+=+..+.+.|.+.|.|+|.|-+ .++.-+|+.|.
T Consensus 125 FsgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Pt-------p~lp~Ile~l~ 188 (335)
T COG1313 125 FSGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPT-------PHLPFILEALR 188 (335)
T ss_pred ecCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCC-------CchHHHHHHHH
Confidence 4699999999975422 23345677888888888888899999999885543 24555555553
No 153
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=95.34 E-value=0.3 Score=48.70 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=67.7
Q ss_pred ceeeeee-ccCCCCCCCccccccccCC-----ccccCCHHHHHHHHHHHHHC-CCcE--EEEeeccCCCCCCCCCCCHHH
Q 019874 191 KFVEILP-INVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIAD-GVKE--VWLSSEDTGAYGRDIGVNLPI 261 (334)
Q Consensus 191 ~~~~~v~-isrGC~~~CsfC~ip~~rG-----~~rsr~~e~Iv~Ei~~l~~~-G~ke--i~l~~~d~~~yg~d~~~~l~~ 261 (334)
++...++ ++..|+.+|+||......+ .....+.+.+.+-|+.+.+. +... |.|+|......+. ..+.+
T Consensus 12 p~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~---~~~~~ 88 (412)
T PRK13745 12 PLYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPL---SFYKK 88 (412)
T ss_pred ceEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcH---HHHHH
Confidence 4555666 5579999999998743211 11236777777777777653 5555 4455544443321 12333
Q ss_pred HHHHHHHhCCCCCCceEEEe-ecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHh
Q 019874 262 LLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVS 323 (334)
Q Consensus 262 Ll~~l~~~i~~~~~~~ir~~-~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M 323 (334)
+++-+.+.. ....++++ .+|...++++. ++.++++ ++ .+.|++.+. +++-...
T Consensus 89 ~~~~~~~~~---~~~~i~~~i~TNG~ll~~e~--~~~l~~~--~~-~v~ISlDG~-~~~hD~~ 142 (412)
T PRK13745 89 ALELQKKYA---RGRQIDNCIQTNGTLLTDEW--CEFFREN--NF-LVGVSIDGP-QEFHDEY 142 (412)
T ss_pred HHHHHHHHc---CCCceEEEEeecCEeCCHHH--HHHHHHc--Ce-EEEEEecCC-HHHhhhh
Confidence 333322211 12234443 36888888766 5555554 44 899999975 4443333
No 154
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=95.15 E-value=0.012 Score=57.81 Aligned_cols=52 Identities=21% Similarity=0.400 Sum_probs=43.7
Q ss_pred CCCCCCCCC-CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccc
Q 019874 49 GSLSPKIPG-TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP 109 (334)
Q Consensus 49 ~~~~~~~~~-~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~ 109 (334)
....+++|+ ..+.+|+|+||..|..|++.+.+.|++.|| |++.+-+-++++.
T Consensus 385 ~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgY---------dv~~lFaysmR~k 437 (552)
T KOG2492|consen 385 AHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGY---------DVVFLFAYSMREK 437 (552)
T ss_pred HHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhcc---------CeeeeEEeeeccc
Confidence 346788999 689999999999999999999999999998 4555656677654
No 155
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=94.79 E-value=0.24 Score=40.84 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC---CCEEEEccccCCC
Q 019874 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK---KPLVVAGCVPQGS 138 (334)
Q Consensus 76 e~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~---~~VVv~GC~a~~~ 138 (334)
..++..|+..||+++.. ..+||+|+| |++- ....+.+.++++++++.+ .++++||=.+...
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~i-S~~~-~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~ 94 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGL-SSLS-GGHMTLFPEVIELLRELGAGDILVVGGGIIPPED 94 (122)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-cccc-hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHH
Confidence 34566788889988643 357999999 3333 334456778888888773 4678888543221
Q ss_pred h-hhhccCccEEEcCCC
Q 019874 139 R-DLKELEGVSIVGVQQ 154 (334)
Q Consensus 139 ~-~~~~~~~d~vvG~~e 154 (334)
. ...+...|.+++.+.
T Consensus 95 ~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 95 YELLKEMGVAEIFGPGT 111 (122)
T ss_pred HHHHHHCCCCEEECCCC
Confidence 1 123455788887765
No 156
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=94.63 E-value=0.18 Score=47.46 Aligned_cols=75 Identities=21% Similarity=0.291 Sum_probs=48.0
Q ss_pred eeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC-CCHHHHHHHHHHhCC
Q 019874 194 EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELP 271 (334)
Q Consensus 194 ~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~-~~l~~Ll~~l~~~i~ 271 (334)
.++..+.=|.++|.||.+.+.+ .-...+++=.+-++.....|.+.+++|+.|--.- .|-| ..|++-+++|.+..|
T Consensus 72 TFmImG~~CTR~C~FC~V~~g~--P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL-~DGGA~hfa~~i~~Ire~~P 147 (306)
T COG0320 72 TFMILGDICTRRCRFCDVKTGR--PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDL-PDGGAQHFAECIRAIRELNP 147 (306)
T ss_pred EEeeccchhccCCCccccCCCC--CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccc-cccchHHHHHHHHHHHhhCC
Confidence 3566788899999999997654 2233334433333444456999999998653211 0112 468899999877554
No 157
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=94.28 E-value=0.45 Score=50.94 Aligned_cols=103 Identities=16% Similarity=0.275 Sum_probs=69.4
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~ 123 (334)
..+|.+-|+|-.....=...+...|+..||++... .++||+|+| |+--....+.+-.+++.+++
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~a~ivvl--cs~d~~~~e~~~~l~~~Lk~ 659 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVENDVHVVGV--SSLAAGHKTLVPALIEALKK 659 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcCCCEEEE--eccchhhHHHHHHHHHHHHh
Confidence 46899999999765666778899999999998633 158999999 44332333456677788887
Q ss_pred CC---CCEEEEccccCCChh-hhccCccEEEcCCChHHHHHHHHH
Q 019874 124 AK---KPLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEE 164 (334)
Q Consensus 124 ~~---~~VVv~GC~a~~~~~-~~~~~~d~vvG~~e~~~i~e~l~~ 164 (334)
.| .+|++||-.+....+ ..+..+|.+++.+. .+.++|+.
T Consensus 660 ~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~--d~~~~L~~ 702 (714)
T PRK09426 660 LGREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGT--VIADAAID 702 (714)
T ss_pred cCCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCC--CHHHHHHH
Confidence 76 357888864432222 34556787776654 34555543
No 158
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=94.28 E-value=0.15 Score=44.03 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=35.6
Q ss_pred CCCCCCCccccccccCCc--cccCC---HHHHHHHHHHHHHCCC--cEEEEeeccCCCCCCCCCCCHHHHHHHHHHhC
Q 019874 200 VGCLGACTYCKTKHARGH--LGSYT---VESLVGRVRTVIADGV--KEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (334)
Q Consensus 200 rGC~~~CsfC~ip~~rG~--~rsr~---~e~Iv~Ei~~l~~~G~--kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (334)
.|||++|.||..+..+.. -+..+ .++|+++++ ..+. ..|.|+|.+.... .. -..+.++++++.+..
T Consensus 24 ~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~---~~~~~~~gvt~sGGEPl~~-~~-~~~l~~l~~~~k~~~ 96 (154)
T PRK11121 24 SGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLN---DTRIKRQGLSLSGGDPLHP-QN-VPDILKLVQRVKAEC 96 (154)
T ss_pred CCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHH---HhCCCCCcEEEECCCccch-hh-HHHHHHHHHHHHHHC
Confidence 899999999988765311 11123 344444443 2233 4678887554321 00 023556667665544
No 159
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=93.56 E-value=0.29 Score=46.12 Aligned_cols=97 Identities=21% Similarity=0.360 Sum_probs=60.3
Q ss_pred eeeccCCCCCCCccccccccCC--ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC-CCHHHHHHHHHHhCC
Q 019874 195 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELP 271 (334)
Q Consensus 195 ~v~isrGC~~~CsfC~ip~~rG--~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~-~~l~~Ll~~l~~~i~ 271 (334)
++-..+-|.+.|.||.+...|. +.-...|+...+-|++ =|...|+||+.|--... |.+ .++++-++.|...-|
T Consensus 114 IMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIas---Wgl~YiVlTSVDRDDlp-DgGa~HiAkTVq~iK~k~p 189 (360)
T KOG2672|consen 114 IMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIAS---WGLDYIVLTSVDRDDLP-DGGANHIAKTVQKIKEKAP 189 (360)
T ss_pred EEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHH---cCCCeEEEEecccccCc-CcchHHHHHHHHHHHhhCc
Confidence 4556899999999999987764 3555666666655543 48999999986632211 112 468888888865433
Q ss_pred CCCCceEEEeecCCCChhhhHHHHHHHHhC
Q 019874 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301 (334)
Q Consensus 272 ~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~ 301 (334)
.+=+-.+-|+ |.-+++-++.++.+
T Consensus 190 -----~ilvE~L~pD-F~Gd~~~Ve~va~S 213 (360)
T KOG2672|consen 190 -----EILVECLTPD-FRGDLKAVEKVAKS 213 (360)
T ss_pred -----ccchhhcCcc-ccCchHHHHHHHhc
Confidence 2223334555 44444445556553
No 160
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=93.21 E-value=0.28 Score=44.06 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC----CCEEEEccccC
Q 019874 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK----KPLVVAGCVPQ 136 (334)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~----~~VVv~GC~a~ 136 (334)
...++..|+..||++++- ..++|+|.+ ||+.+... ..+.+.++.+++.+ .+|++||...+
T Consensus 99 ~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~l-S~~~~~~~-~~~~~~i~~lr~~~~~~~~~i~vGG~~~~ 176 (201)
T cd02070 99 KNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGL-SALMTTTM-GGMKEVIEALKEAGLRDKVKVMVGGAPVN 176 (201)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-eccccccH-HHHHHHHHHHHHCCCCcCCeEEEECCcCC
Confidence 566778899999998742 357999999 55544443 45677777777654 57999997765
Q ss_pred CChhh-hccCccEEEc
Q 019874 137 GSRDL-KELEGVSIVG 151 (334)
Q Consensus 137 ~~~~~-~~~~~d~vvG 151 (334)
++. ..+.+|.+..
T Consensus 177 --~~~~~~~GaD~~~~ 190 (201)
T cd02070 177 --QEFADEIGADGYAE 190 (201)
T ss_pred --HHHHHHcCCcEEEC
Confidence 333 2445565443
No 161
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=92.71 E-value=0.95 Score=44.83 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=54.9
Q ss_pred CCCCCccccccccCCccccCCHHHHHHHHHHHHHC-CCcE--EEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceE
Q 019874 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKE--VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML 278 (334)
Q Consensus 202 C~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~-G~ke--i~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~i 278 (334)
||.+|.||..+...-..+..+.+...+=|+.+.+. +... |.+.|......| ..+.+.+..+.++.. ...++
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~----~~f~~~~~~l~~k~~--~~~~i 91 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAG----LDFYRKAVALQQKYA--NGKTI 91 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccch----HHHHHHHHHHHHHHh--cCCee
Confidence 99999999887543222335655555556666553 4455 333333332222 234444444333332 34566
Q ss_pred EEee-cCCCChhhhHHHHHHHHhCCCCCCeEEEccCC
Q 019874 279 RIGM-TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 314 (334)
Q Consensus 279 r~~~-~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQS 314 (334)
..+. +|...++++. .+-++++ ++ .+-|.|..
T Consensus 92 ~~siqTNg~LL~~e~--~e~l~~~--~~-~IgISiDG 123 (378)
T COG0641 92 SNALQTNGTLLNDEW--AEFLAEH--DF-LIGISIDG 123 (378)
T ss_pred EEEEEEcccccCHHH--HHHHHhc--Cc-eEEEeccC
Confidence 5443 6888888766 3334443 44 66666553
No 162
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=92.70 E-value=0.34 Score=42.51 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=51.0
Q ss_pred CceEEEEeeCCCCChhHHHHHHH-----HHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAG-----QLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAG 132 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~-----~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~G 132 (334)
...+|+.++|+ |=.|.|.++- .+++.|+..+.++.+||+++|+ =+||....+.+.++.++.-+...-|.+|.
T Consensus 30 ~~Slw~~~~~t--~cC~iEi~a~~~p~yD~eRfGi~~~aSPRhADvLlVt-G~vT~km~~~l~~~yeqmPePK~VIA~G~ 106 (173)
T PRK14818 30 ASSLYYLTFGL--ACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVA-GTLTYKMAERARLLYDQMPEPKYVISMGS 106 (173)
T ss_pred hCCceeeEeCC--ccHHHHHHHhcCCccCHHHcCCeecCCcccccEEEEe-CcCccccHHHHHHHHHhCCCCCEEEEecc
Confidence 35688888885 4488888763 3577799999999999999884 46776655555544444433222233666
Q ss_pred cccCC
Q 019874 133 CVPQG 137 (334)
Q Consensus 133 C~a~~ 137 (334)
|..+.
T Consensus 107 CA~sG 111 (173)
T PRK14818 107 CSNCG 111 (173)
T ss_pred ccccC
Confidence 86654
No 163
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=92.32 E-value=0.29 Score=48.55 Aligned_cols=120 Identities=11% Similarity=0.016 Sum_probs=74.5
Q ss_pred CCCC---CccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCC--CCCHHHHHHHHHHhCCCCCCc
Q 019874 202 CLGA---CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGST 276 (334)
Q Consensus 202 C~~~---CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~--~~~l~~Ll~~l~~~i~~~~~~ 276 (334)
|... |.||....---.-...|+..|.+|..+-.-.++.+. + +.+.+ ++.|. ..++.++.+...... .+.
T Consensus 37 c~~~~~~C~~cy~~v~~~~~~~~~~~~v~~e~~~~lg~~~e~~-~-~~~~~-~~~d~~c~p~le~~~~r~~~~~---~d~ 110 (414)
T COG1625 37 CIPYRFGCDDCYLSVNELDTGFIPPLMVEKEPDEDLGLEFEEV-L-GAKQC-GNGDTFCYPDLEPRGRRARLYY---KDD 110 (414)
T ss_pred CCCccccccceeeEEecccCCCCCHhHhhcccccccccccccc-c-ceeec-CCCCcccCcchhhhhhHHHhhc---CCc
Confidence 5555 999986532111145688888888864221111111 0 21211 23332 146778888876643 367
Q ss_pred eEEEeecCCCChhh-hHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCc
Q 019874 277 MLRIGMTNPPFILE-HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKS 331 (334)
Q Consensus 277 ~ir~~~~~p~~i~~-~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~ 331 (334)
|+|+++++-..++. .+ ...+.+ .+..-+.+.++|.++++.+.|-|...+++
T Consensus 111 ~~rL~~tsG~~~~lt~~--~~~i~~--~gvdev~~SVhtT~p~lR~klm~n~~A~~ 162 (414)
T COG1625 111 DIRLSFTSGSGFTLTNR--AERIID--AGVDEVYFSVHTTNPELRAKLMKNPNAEQ 162 (414)
T ss_pred cceeeeeeccceeccch--HHHHHH--cCCCeeEEEEeeCCHHHHHHHhcCCcHHH
Confidence 89999987665542 22 223443 47899999999999999999999887776
No 164
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=91.93 E-value=0.41 Score=42.27 Aligned_cols=107 Identities=18% Similarity=0.242 Sum_probs=60.9
Q ss_pred cCCCCCCCccccccccCCc----cccCCHHHHHHHHHHHHH-CCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCC
Q 019874 199 NVGCLGACTYCKTKHARGH----LGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273 (334)
Q Consensus 199 srGC~~~CsfC~ip~~rG~----~rsr~~e~Iv~Ei~~l~~-~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~ 273 (334)
.-||+..|.||-..+-+-+ ....+|++|.+.+..+.+ .|..-+.+.|..... | ++++.++++-+ +
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP~l-~---~EHvlevIeLl----~-- 117 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEPIL-G---REHVLEVIELL----V-- 117 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCccc-c---HHHHHHHHHhc----c--
Confidence 4799999999987432221 245689999999887764 699988887754321 2 13444444443 2
Q ss_pred CCceEEEeecCCCCh--hhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHH
Q 019874 274 GSTMLRIGMTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321 (334)
Q Consensus 274 ~~~~ir~~~~~p~~i--~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk 321 (334)
+... +.-+|-..+ +..+ .+++..+++ -++.+.+---+++-..
T Consensus 118 ~~tF--vlETNG~~~g~drsl--v~el~nr~n--v~vRVsvKG~dpesF~ 161 (228)
T COG5014 118 NNTF--VLETNGLMFGFDRSL--VDELVNRLN--VLVRVSVKGWDPESFE 161 (228)
T ss_pred CceE--EEEeCCeEEecCHHH--HHHHhcCCc--eEEEEEecCCCHHHHH
Confidence 1111 223444333 5555 445554433 3455666555555443
No 165
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=91.90 E-value=0.57 Score=45.15 Aligned_cols=113 Identities=16% Similarity=0.231 Sum_probs=64.0
Q ss_pred eeeccCCCCCCCcccccccc-CCc------cc-cCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC--CCHHHHHH
Q 019874 195 ILPINVGCLGACTYCKTKHA-RGH------LG-SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLN 264 (334)
Q Consensus 195 ~v~isrGC~~~CsfC~ip~~-rG~------~r-sr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~--~~l~~Ll~ 264 (334)
.|.++-=||..|-||-+..- +|+ .| -.+.++|++|++..-+.| +-+||.| .+- .+..+.++
T Consensus 31 VlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~G---asiTGGd------Pl~~ieR~~~~ir 101 (353)
T COG2108 31 VLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALG---ASITGGD------PLLEIERTVEYIR 101 (353)
T ss_pred EEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhcccc---ccccCCC------hHHHHHHHHHHHH
Confidence 45566679999999987633 233 12 245688888887765544 3345432 210 23445666
Q ss_pred HHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCC--eEEEc-cCC-cCHHHHHHh
Q 019874 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS--FLHVP-VQS-GSDAVLSVS 323 (334)
Q Consensus 265 ~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~--~l~ig-iQS-gsd~vLk~M 323 (334)
.+.+++. ....+.+ |+++...+++. |.+|.. +|+. +||.| .+| .+++.++.+
T Consensus 102 ~LK~efG--~~fHiHL-YT~g~~~~~e~--l~~L~e--AGLDEIRfHp~~~~~~~~e~~i~~l 157 (353)
T COG2108 102 LLKDEFG--EDFHIHL-YTTGILATEEA--LKALAE--AGLDEIRFHPPRPGSKSSEKYIENL 157 (353)
T ss_pred HHHHhhc--cceeEEE-eeccccCCHHH--HHHHHh--CCCCeEEecCCCccccccHHHHHHH
Confidence 6655442 3345554 67777777765 666664 3555 45554 233 334444444
No 166
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=91.55 E-value=0.51 Score=41.88 Aligned_cols=75 Identities=23% Similarity=0.519 Sum_probs=45.3
Q ss_pred ceEEEEee--CCCCChhHHHHHHH-----HHHhCCCeee-CCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEE
Q 019874 59 ETIYMKTF--GCSHNQSDSEYMAG-----QLSAFGYALT-DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (334)
Q Consensus 59 ~~~~i~t~--GC~~N~~Dse~m~~-----~L~~~G~~~~-~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv 130 (334)
..+|..++ || .|.|.++- .+++.|+..+ .++.+||+++|.- +|+........++.++..+...-|.+
T Consensus 41 ~slw~~~~~~~C----C~iE~~a~~~p~yD~eRfGi~~~~~sPRhADvllVtG-~VT~~m~~~l~~~~e~~p~pK~VIAv 115 (182)
T PRK14816 41 NSLWPLTFATSC----CGIEFMALGAARYDMARFGFEVARASPRQADMIMVCG-TITNKMAPVLKRLYDQMADPKYVIAV 115 (182)
T ss_pred CccceeeeCcch----HHHHHHHhcCccccHHHhCccccCCCCCcceEEEEec-CCcchhHHHHHHHHHhcCCCCEEEEe
Confidence 45666666 56 99998763 3566787776 8899999998854 66665333333333332222222336
Q ss_pred EccccCCC
Q 019874 131 AGCVPQGS 138 (334)
Q Consensus 131 ~GC~a~~~ 138 (334)
|-|..+.-
T Consensus 116 GsCA~~GG 123 (182)
T PRK14816 116 GGCAVSGG 123 (182)
T ss_pred ccccccCC
Confidence 66876644
No 167
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=91.43 E-value=0.52 Score=40.38 Aligned_cols=73 Identities=26% Similarity=0.488 Sum_probs=43.0
Q ss_pred ceEEEEeeC--CCCChhHHHHHHHH-----HHhCC-CeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-
Q 019874 59 ETIYMKTFG--CSHNQSDSEYMAGQ-----LSAFG-YALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV- 129 (334)
Q Consensus 59 ~~~~i~t~G--C~~N~~Dse~m~~~-----L~~~G-~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV- 129 (334)
..+|+..+| | .|.|.++.. +++.| ...+..+.+||+.+|+- +|+.+..+.+.++.++..+ -+.||
T Consensus 17 ~s~w~~~~~t~c----C~iE~~~~~~~~~D~erfG~i~~~~sPr~aDvllVtG-~vt~~~~~~l~~~~e~~p~-pk~VIA 90 (145)
T TIGR01957 17 NSLWPLTFGLAC----CAIEMMATGASRYDLDRFGSEVFRASPRQADVMIVAG-TVTKKMAPALRRLYDQMPE-PKWVIS 90 (145)
T ss_pred CCceeeeeCccH----HHHHHHHccCccccHHHhCCceecCCCCcceEEEEec-CCcHHHHHHHHHHHHhccC-CceEEE
Confidence 445666665 6 888887644 34556 55678889999998854 6666543443333333222 23344
Q ss_pred EEccccCC
Q 019874 130 VAGCVPQG 137 (334)
Q Consensus 130 v~GC~a~~ 137 (334)
+|-|....
T Consensus 91 ~GsCA~~G 98 (145)
T TIGR01957 91 MGACANSG 98 (145)
T ss_pred ecceeecC
Confidence 66676543
No 168
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=90.68 E-value=1.5 Score=41.11 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=40.6
Q ss_pred eeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHH-HHH--HCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHH
Q 019874 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR-TVI--ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~-~l~--~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (334)
..+.-...|||++|-||.-|-+...-+..+.+++..|+- ... ..+..-|.|+|.+.+.+ .+.+.++++...+
T Consensus 36 ~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SGGEP~~q----~e~~~~~~~~ake 110 (260)
T COG1180 36 IRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSGGEPTLQ----AEFALDLLRAAKE 110 (260)
T ss_pred EEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEECCcchhh----HHHHHHHHHHHHH
Confidence 445667799999999999876543112334444443322 221 22667788876443322 1234566666543
No 169
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=90.56 E-value=0.96 Score=44.01 Aligned_cols=108 Identities=19% Similarity=0.115 Sum_probs=63.2
Q ss_pred ccCCHHHHHHHHHHHHHCCC----cEEEEeeccCCCCCCCCCCCH-------------HHHHHHHHHhCCCCCCceEEEe
Q 019874 219 GSYTVESLVGRVRTVIADGV----KEVWLSSEDTGAYGRDIGVNL-------------PILLNAIVAELPPDGSTMLRIG 281 (334)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~----kei~l~~~d~~~yg~d~~~~l-------------~~Ll~~l~~~i~~~~~~~ir~~ 281 (334)
|.-|-++-...+++|.+.|. -|+.+.|..|.+...+-...| +.+-+++. .-.....+-+.+.
T Consensus 148 RYdP~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~-yse~s~tKCiGiT 226 (554)
T KOG2535|consen 148 RYDPYLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVK-YSERSLTKCIGIT 226 (554)
T ss_pred hcCHHHHHHHHHHHHHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHH-hhhhccceeeeEE
Confidence 44577778888888887663 456666766654322100001 11111111 0000011222221
Q ss_pred -ecCCCChh-hhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 282 -MTNPPFIL-EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 282 -~~~p~~i~-~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
-++|++-. .+| ..|+.. ||..|.||+||.=++|-+..|||+|+..+
T Consensus 227 IETRPDyC~~~Hl---~~ML~Y--GCTRlEiGVQS~YEDVARDTNRGHTV~aV 274 (554)
T KOG2535|consen 227 IETRPDYCLKRHL---SDMLTY--GCTRLEIGVQSVYEDVARDTNRGHTVKAV 274 (554)
T ss_pred eecCcccchhhhH---HHHHhc--CCceEEeccchhHHHhhhcccCCccHHHH
Confidence 35888644 454 556653 89999999999999999999999998643
No 170
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=89.70 E-value=0.94 Score=40.59 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=48.2
Q ss_pred HHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC----CCEEEEccccC
Q 019874 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK----KPLVVAGCVPQ 136 (334)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~----~~VVv~GC~a~ 136 (334)
-..++..|+..||++++- ..++|+|.+ ||+.+... ..+.+.++++++.+ .+|+|||-..
T Consensus 101 ~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~l-S~~~~~~~-~~~~~~i~~l~~~~~~~~v~i~vGG~~~- 177 (197)
T TIGR02370 101 KNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTG-SALMTTTM-YGQKDINDKLKEEGYRDSVKFMVGGAPV- 177 (197)
T ss_pred HHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEE-ccccccCH-HHHHHHHHHHHHcCCCCCCEEEEEChhc-
Confidence 456678889999999742 357999999 55655543 45777888887763 5799999554
Q ss_pred CChhh-hccCccEE
Q 019874 137 GSRDL-KELEGVSI 149 (334)
Q Consensus 137 ~~~~~-~~~~~d~v 149 (334)
.++. ..+.+|..
T Consensus 178 -~~~~~~~~gad~~ 190 (197)
T TIGR02370 178 -TQDWADKIGADVY 190 (197)
T ss_pred -CHHHHHHhCCcEE
Confidence 3554 34445543
No 171
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=88.64 E-value=1 Score=40.01 Aligned_cols=76 Identities=21% Similarity=0.385 Sum_probs=43.4
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHH-----HhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcc
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQL-----SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L-----~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC 133 (334)
..+|+.++|+. =.|.|.++... +..|...+..+.+||+.+|.- +|+......+..+.++..+...-|.+|-|
T Consensus 35 ~Slw~~~~~~~--CC~iE~~~~~~~~yDieRfGi~~~~sPr~aDvllV~G-~vt~~~~~~l~~~~e~mp~pk~VIA~GaC 111 (183)
T PRK06411 35 NSLWPLTFGLA--CCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAG-TLTNKMAPALRRLYDQMPEPKWVISMGSC 111 (183)
T ss_pred CCccceeeCcc--HhHHHHHHccCccccHHHhCccccCCCCceeEEEEEe-CCCccchHHHHHHHHHcCcCCeEEEEecc
Confidence 34555555443 19999887543 445666678899999998855 66665433333333332222222346778
Q ss_pred ccCC
Q 019874 134 VPQG 137 (334)
Q Consensus 134 ~a~~ 137 (334)
....
T Consensus 112 A~~G 115 (183)
T PRK06411 112 ANSG 115 (183)
T ss_pred cccC
Confidence 6653
No 172
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=88.49 E-value=3.8 Score=38.65 Aligned_cols=88 Identities=19% Similarity=0.053 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHHHHHH---CCCcEEEEeeccCCCCCCCCCCC-HHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHH
Q 019874 220 SYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295 (334)
Q Consensus 220 sr~~e~Iv~Ei~~l~~---~G~kei~l~~~d~~~yg~d~~~~-l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l 295 (334)
..+.++++++++.... .+...|.|+|.+-+.+ .. +.++++.+.+ . |. .+.+ .+|-....+. +
T Consensus 105 ~~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~-----~~~l~~l~~~~k~-~---g~-~~~i-~TnG~~~~~~---~ 170 (295)
T TIGR02494 105 EMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQ-----PEFALALLQACHE-R---GI-HTAV-ETSGFTPWET---I 170 (295)
T ss_pred CCcHHHHHHHHHHHHHhcccCCCcEEeeCcchhch-----HHHHHHHHHHHHH-c---CC-cEee-eCCCCCCHHH---H
Confidence 3578888888876432 2345688877544322 23 3577777754 2 32 3333 3444323333 3
Q ss_pred HHHHhCCCCCCeEEEccCCcCHHHHHHhC
Q 019874 296 AEVLRHPCVYSFLHVPVQSGSDAVLSVSQ 324 (334)
Q Consensus 296 ~~l~~~~~g~~~l~igiQSgsd~vLk~M~ 324 (334)
..+.. .+..+.+.+.+.+++.-+...
T Consensus 171 ~~ll~---~~d~~~isl~~~~~~~~~~~~ 196 (295)
T TIGR02494 171 EKVLP---YVDLFLFDIKHLDDERHKEVT 196 (295)
T ss_pred HHHHh---hCCEEEEeeccCChHHHHHHh
Confidence 44443 246678899999887766553
No 173
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=88.47 E-value=0.25 Score=46.33 Aligned_cols=116 Identities=16% Similarity=0.281 Sum_probs=68.8
Q ss_pred eeccCCCCCCCccccccccC---CccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCC
Q 019874 196 LPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (334)
Q Consensus 196 v~isrGC~~~CsfC~ip~~r---G~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (334)
+..+.-|+.+|.||-..-.+ .+-+....++++.=...++.+|+..+.|+|.+-+-+ .| ..+....+.. ++
T Consensus 15 islte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr-~d----i~~i~~g~~~-l~- 87 (323)
T KOG2876|consen 15 ISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIR-QD----IVPIVAGLSS-LP- 87 (323)
T ss_pred hhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCccc-cc----ccchhhhhhc-cc-
Confidence 44568899999999865333 123556778888877777888999999998776544 22 3344444433 44
Q ss_pred CCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCC
Q 019874 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325 (334)
Q Consensus 273 ~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R 325 (334)
+++.+.+. ++-. ++-.+ +-.+. .++...+.+.+.+....-...|.|
T Consensus 88 -gLks~~IT-tng~-vl~R~--lp~lh--kaglssiNiSldtl~~aKfa~~~r 133 (323)
T KOG2876|consen 88 -GLKSIGIT-TNGL-VLARL--LPQLH--KAGLSSINISLDTLVRAKFAKLTR 133 (323)
T ss_pred -chhhhcee-ccch-hhhhh--hhHHH--hhcccchhhhhhhhhHHHHHHHhh
Confidence 55555443 2221 22222 22332 346777777777666555444433
No 174
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=87.75 E-value=0.38 Score=42.85 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=46.9
Q ss_pred ceEEEEeeCCCCChhHHHHHHH-----HHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcc
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAG-----QLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~-----~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC 133 (334)
..+|+.+||+. -.|.|.++- .|++.|+..+..+.+||+.+|+- +|+..-...+.++.++.-+...-|.+|-|
T Consensus 28 ~Slw~~~~~t~--cC~iE~~a~~~p~yD~eRfGi~~~asPR~ADvllVtG-~Vt~km~~~l~~~y~qmPePK~VIA~GaC 104 (189)
T PRK14813 28 SSLWPMGFGLA--CCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAG-TVTMKMAERVVRLYEQMPEPRYVLSMGSC 104 (189)
T ss_pred CCCceeeeCcc--cHHHHHHHhcccCCCHHHcCCeecCCcccceEEEEec-cCchhhHHHHHHHHHhCCCCCEEEEeccc
Confidence 45677777664 477777653 35677888899999999998855 66665444444444443322222336668
Q ss_pred ccC
Q 019874 134 VPQ 136 (334)
Q Consensus 134 ~a~ 136 (334)
..+
T Consensus 105 A~s 107 (189)
T PRK14813 105 SNC 107 (189)
T ss_pred ccC
Confidence 654
No 175
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=87.68 E-value=0.98 Score=38.65 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=38.4
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccCCChhh-hccCccEEEcC
Q 019874 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDL-KELEGVSIVGV 152 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~~~~~~-~~~~~d~vvG~ 152 (334)
++||+|+++..|+.+.+ +.++++..+ +++.+++.|.-++..|+. ....++.+-|.
T Consensus 61 ~~aD~viiTGsTlvN~T---i~~iL~~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~ 116 (147)
T PF04016_consen 61 PWADVVIITGSTLVNGT---IDDILELAR-NAREVILYGPSAPLHPEALFDYGVTYVGGS 116 (147)
T ss_dssp GG-SEEEEECHHCCTTT---HHHHHHHTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEE
T ss_pred ccCCEEEEEeeeeecCC---HHHHHHhCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEE
Confidence 56999999999988865 445666555 567899999999999974 45456665554
No 176
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=87.54 E-value=3.1 Score=38.27 Aligned_cols=120 Identities=15% Similarity=0.201 Sum_probs=73.3
Q ss_pred eccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC-CCHHHHHHHHHHhCCCCCC
Q 019874 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGS 275 (334)
Q Consensus 197 ~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~-~~l~~Ll~~l~~~i~~~~~ 275 (334)
-+.+=|..+|.-|.-.+.++-. +-+-++++++...+.+.|+.-+.|.|.-.. -| +.+ ..+.++|+++.++. +.
T Consensus 16 VTG~yC~lnC~HCg~~~L~~Mi-~vt~~~l~k~~~el~kkGy~g~llSGGm~s-rg-~VPl~kf~d~lK~lke~~---~l 89 (275)
T COG1856 16 VTGAYCSLNCPHCGRHYLEHMI-KVTTKSLLKRCMELEKKGYEGCLLSGGMDS-RG-KVPLWKFKDELKALKERT---GL 89 (275)
T ss_pred EeccceEecChHHHHHHHHHhc-ccchHHHHHHHHHHHhcCceeEEEeCCcCC-CC-CccHHHHHHHHHHHHHhh---Ce
Confidence 3568899999999988776642 233389999999999999999988773221 01 001 24666777775532 21
Q ss_pred ceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHh-CCCCCcCc
Q 019874 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVS-QKIVPTKS 331 (334)
Q Consensus 276 ~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M-~R~~t~e~ 331 (334)
-+ ..|...+++.. +..++.+ +...+.+-+= |+++++++. +-..++++
T Consensus 90 -~i---naHvGfvdE~~--~eklk~~--~vdvvsLDfv-gDn~vIk~vy~l~ksv~d 137 (275)
T COG1856 90 -LI---NAHVGFVDESD--LEKLKEE--LVDVVSLDFV-GDNDVIKRVYKLPKSVED 137 (275)
T ss_pred -EE---EEEeeeccHHH--HHHHHHh--cCcEEEEeec-CChHHHHHHHcCCccHHH
Confidence 11 23455555543 6666653 5666666665 455566654 33344443
No 177
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=87.54 E-value=1.7 Score=40.52 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=45.6
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHH-----HhCCCe-eeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EE
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQL-----SAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VA 131 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L-----~~~G~~-~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v~ 131 (334)
..+|+.++|| +=.|.|.++... ++.|+. .+..+.+||+.+|+- +|+..-...+.++.++.. +-+.|| +|
T Consensus 31 ~Slw~~~~gt--~CC~iEila~l~p~yDieRFGi~~~~~sPRhADIlLVtG-~VT~km~~~L~rlyeqmP-~PK~VIAvG 106 (264)
T PRK14819 31 SSVWPMAFGL--ACCAIEMMATGLSRYDLARFGAELFRASPRQADLMIVAG-TVTKKMAPQVVRLYNQMP-EPRYVISMG 106 (264)
T ss_pred CCcceeeeCC--cccHHHHHHhccccccHHHhCcccccCCCCcceEEEEec-CCchhhHHHHHHHHHhcc-CCCeEEEEc
Confidence 5678888886 448999887553 445663 567889999998855 666543333333333322 223344 66
Q ss_pred ccccCC
Q 019874 132 GCVPQG 137 (334)
Q Consensus 132 GC~a~~ 137 (334)
-|....
T Consensus 107 aCA~~G 112 (264)
T PRK14819 107 ACATSG 112 (264)
T ss_pred cccccC
Confidence 686654
No 178
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=87.19 E-value=1.7 Score=39.53 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC--CCEEEEccc
Q 019874 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCV 134 (334)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~--~~VVv~GC~ 134 (334)
-..++-.|+..||++++- ..+||+|.+ ||+.+.. ...+.+.++++++.+ .+|++||-.
T Consensus 105 ~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~l-S~~~~~~-~~~~~~~i~~L~~~~~~~~i~vGG~~ 178 (213)
T cd02069 105 KNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGL-SGLLVPS-LDEMVEVAEEMNRRGIKIPLLIGGAA 178 (213)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-ccchhcc-HHHHHHHHHHHHhcCCCCeEEEEChh
Confidence 445677889999999753 357999999 5555544 346777788887664 689999943
No 179
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=86.89 E-value=0.93 Score=42.29 Aligned_cols=65 Identities=20% Similarity=0.448 Sum_probs=46.3
Q ss_pred cCCCCCCCccccccc--cCCc--cccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCC---CCCHHHHHHHHHH
Q 019874 199 NVGCLGACTYCKTKH--ARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVA 268 (334)
Q Consensus 199 srGC~~~CsfC~ip~--~rG~--~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~---~~~l~~Ll~~l~~ 268 (334)
+-||...|.||.... -.|- .+...+|+|+++.+...+.|-..+.+-. +| +|. ...|..+++.|.+
T Consensus 91 tGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGa----AW-RD~~GRk~~fk~IlE~ike 162 (380)
T KOG2900|consen 91 TGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGA----AW-RDMKGRKSAFKRILEMIKE 162 (380)
T ss_pred cCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecch----hh-hhhccchhHHHHHHHHHHH
Confidence 479999999998763 3452 5778999999999999999988877632 23 232 2456666665543
No 180
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=86.34 E-value=1.8 Score=39.61 Aligned_cols=75 Identities=17% Similarity=0.305 Sum_probs=45.6
Q ss_pred ceEEEEeeCCCCChhHHHHHHH-----HHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EEc
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAG-----QLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAG 132 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~-----~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v~G 132 (334)
..+|+.++|..= .|.|.++- .|+..|+..+..+..||+++|. =+|+..-.+.+.++.++..+ -+.|| +|-
T Consensus 32 ~Slw~~~~g~sC--C~iE~~a~~~p~yDleRfGi~~~aSPRhADvliVt-G~VT~km~~~L~rlyeqmPe-PK~VIA~Ga 107 (225)
T CHL00023 32 SSLWPLLYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTA-GTVTMKMAPSLVRLYEQMPE-PKYVIAMGA 107 (225)
T ss_pred CCcccccCCcch--HHHHHHHhCCCccCHHHcCCeecCCcccceEEEEe-cCCccccHHHHHHHHHhcCC-CCeEEEEcc
Confidence 455655565432 88888763 3566788889999999999884 46776543333333333322 23344 666
Q ss_pred cccCC
Q 019874 133 CVPQG 137 (334)
Q Consensus 133 C~a~~ 137 (334)
|..+.
T Consensus 108 CA~sG 112 (225)
T CHL00023 108 CTITG 112 (225)
T ss_pred ccccC
Confidence 76543
No 181
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=85.03 E-value=2.6 Score=34.24 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=34.4
Q ss_pred eEEEEeeC-CCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccc---hHHHHHHHHHHHhcC-CCCEEEE
Q 019874 60 TIYMKTFG-CSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP---SQSAMDTLIAKCKSA-KKPLVVA 131 (334)
Q Consensus 60 ~~~i~t~G-C~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~---a~~~~~~~i~~~k~~-~~~VVv~ 131 (334)
=+.|.|=| |+ ..+....+..|.. ..+|+|-+.||.+... .=.....+.+.++++ |.+||.|
T Consensus 40 lvgf~~CgGCp--g~~~~~~~~~l~~---------~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~G 105 (107)
T PF08821_consen 40 LVGFFTCGGCP--GRKLVRRIKKLKK---------NGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVEG 105 (107)
T ss_pred EEEEeeCCCCC--hhHHHHHHHHHHH---------CCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEeee
Confidence 34454444 99 4444555555543 3478999999987632 001233344455555 7777764
No 182
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=84.80 E-value=2.5 Score=37.57 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=43.0
Q ss_pred ceEEEEeeCCCCChhHHHHHHH-----HHHhCCCeee-CCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EE
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAG-----QLSAFGYALT-DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VA 131 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~-----~L~~~G~~~~-~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v~ 131 (334)
..+|+.++||. =.|.|.++- .++..|+..+ ..+.+||+++|.- +|+.+-.+.+.++. +...+-+.|| +|
T Consensus 33 ~Slw~~~~~~s--CC~iE~~a~~~~~yDieRfGi~~~~~SPR~ADillVtG-~VT~~m~~~l~r~y-e~~p~pK~VIAvG 108 (183)
T PRK14815 33 NSLWPMPMGLA--CCAIELMAVACSRFDISRFGAEVMRFSPRQADVMIVAG-TVTYKMALAVRRIY-DQMPEPKWVIAMG 108 (183)
T ss_pred CCccceeEccc--hHHHHHHHhcCccccHHHhCcccCCCCCccccEEEEeC-cCchhhHHHHHHHH-HhCCCCCEEEEec
Confidence 45677777663 388887753 2455676554 7889999998844 66654323332222 2222223333 66
Q ss_pred ccccCC
Q 019874 132 GCVPQG 137 (334)
Q Consensus 132 GC~a~~ 137 (334)
.|..+.
T Consensus 109 sCA~~G 114 (183)
T PRK14815 109 ACASSG 114 (183)
T ss_pred cccccC
Confidence 686543
No 183
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=76.84 E-value=1.6 Score=41.73 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=58.0
Q ss_pred cCCCCCCCccccccccCCcc-ccCCHHHHHHHHHHHHHCCCcE-EEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCc
Q 019874 199 NVGCLGACTYCKTKHARGHL-GSYTVESLVGRVRTVIADGVKE-VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST 276 (334)
Q Consensus 199 srGC~~~CsfC~ip~~rG~~-rsr~~e~Iv~Ei~~l~~~G~ke-i~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~ 276 (334)
+.=|-+.|.||+-....--. -..+|++|++---.+.+..+-| ++|.+ -+.- +....+.++++- ++.+.-++.+
T Consensus 61 TN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSS-Gvi~---~~DyTmE~mi~v-ar~LRle~~f 135 (404)
T COG4277 61 TNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSS-GVIK---NPDYTMEEMIEV-ARILRLEHKF 135 (404)
T ss_pred hhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheecc-cccc---CcchHHHHHHHH-HHHHhhcccc
Confidence 45599999999865433322 3568999998776666654433 44432 2111 111223333332 2222101222
Q ss_pred eEEEeecCCCCh---hhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHh
Q 019874 277 MLRIGMTNPPFI---LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVS 323 (334)
Q Consensus 277 ~ir~~~~~p~~i---~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M 323 (334)
+ +|+|-..| ++++ +.++. -.+..+.|-+|-..++-|+..
T Consensus 136 ~---GYIHlK~IPgas~~l--i~eag---lyadRvSiNIElp~~~~lk~l 177 (404)
T COG4277 136 R---GYIHLKIIPGASPDL--IKEAG---LYADRVSINIELPTDDGLKLL 177 (404)
T ss_pred C---cEEEEEecCCCCHHH--HHHHh---hhhheeEEeEecCCcchhhhh
Confidence 2 45543222 3444 33322 246778888888888777765
No 184
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.86 E-value=4.3 Score=36.98 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=20.3
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN 92 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~ 92 (334)
.+++.+.|- --..=++.+++.|+++||++++.
T Consensus 118 a~ri~vlTP---Y~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 118 AQRISVLTP---YIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred cceEEEecc---chhhhhhHHHHHHHhCCeEEEEe
Confidence 355555442 22233567788899999999754
No 185
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=75.84 E-value=5.8 Score=35.39 Aligned_cols=76 Identities=18% Similarity=0.329 Sum_probs=40.8
Q ss_pred ceEEEEeeCCCCChhHHHHHHHH-----HHhCCCe-eeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEc
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQ-----LSAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAG 132 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~-----L~~~G~~-~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~G 132 (334)
..+|..++|..= .+.|.+... ++..|.. .+..+.+||+++|.- +|+....+.+.++.++..+...-|.+|-
T Consensus 33 ~Slw~~~~~~~C--C~iE~~~~~~~~yD~eRfGi~~~~~sPR~ADvllVtG-~VT~~m~~~l~~~yeqmp~pk~VIAvGs 109 (186)
T PRK14814 33 FSLWPYPFATAC--CGIEYMSTACSDYDIARFGAERPSFSPRQADMILVLG-TITYKMAPVLRQIYDQMAEPKFVISVGA 109 (186)
T ss_pred CCCceeeeCCcc--HHHHHHHhcCccccHHHhCccccCCCcccceEEEEec-cCchhhHHHHHHHHHhcCCCCeEEEecc
Confidence 345555555321 556655432 3455664 467889999998844 6666543444433333322222233666
Q ss_pred cccCC
Q 019874 133 CVPQG 137 (334)
Q Consensus 133 C~a~~ 137 (334)
|....
T Consensus 110 CA~~G 114 (186)
T PRK14814 110 CASSG 114 (186)
T ss_pred ccccC
Confidence 86543
No 186
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=75.16 E-value=9.5 Score=33.88 Aligned_cols=67 Identities=18% Similarity=0.329 Sum_probs=38.0
Q ss_pred eeCCCCChhHHHHHHHHH-----HhCCCe-eeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCE-EEEccccCC
Q 019874 65 TFGCSHNQSDSEYMAGQL-----SAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPL-VVAGCVPQG 137 (334)
Q Consensus 65 t~GC~~N~~Dse~m~~~L-----~~~G~~-~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~V-Vv~GC~a~~ 137 (334)
+.|| .|.|.++... +..|.. .+.++.+||+++|.- +|+......+ ..+.+...+-+.| .+|-|....
T Consensus 41 ~~sC----C~iE~~a~~~~~yDi~RfGi~~~~~sPR~aDillVeG-~VT~~m~~~l-~~~~e~~p~pk~VIAvGaCA~~G 114 (180)
T PRK14820 41 ATSC----CGIEFMATMASHYDLARFGSERPSFSPRQADMLMVMG-TIAKKMAPVL-KQVYLQMAEPRWVVAVGACASSG 114 (180)
T ss_pred cccH----HHHHHHHhcCccccHHHhCccccCCCCccceEEEEEe-cCCcccHHHH-HHHHHhcCCCCeEEEEecccccC
Confidence 3466 9999877543 344653 457789999998855 5655433322 2223222222334 477786643
No 187
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=73.68 E-value=3.5 Score=37.58 Aligned_cols=55 Identities=33% Similarity=0.535 Sum_probs=37.7
Q ss_pred ccccCCCCCCCCCCCceEEEE---eeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEE
Q 019874 44 HLSKTGSLSPKIPGTETIYMK---TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWL 100 (334)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~i~---t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlvi 100 (334)
.|++.--.++.-|..++||+. |-+..+|. -..|...|.+.||+++++|++|..|+
T Consensus 7 kMS~tIfLdPV~~~~rtVyv~vrNTSd~~~~l--~~~i~~~L~~kGY~vv~~P~~A~Y~l 64 (215)
T PF05818_consen 7 KMSQTIFLDPVAPSQRTVYVQVRNTSDKDINL--ESQIISALQAKGYQVVDDPDEAHYWL 64 (215)
T ss_pred cccccEEeCCCCcccceEEEEEecCCCCccch--HHHHHHHHHHCCCEEecChhhCeEEE
Confidence 444444344555667888875 33444421 23578899999999999999999775
No 188
>PRK01254 hypothetical protein; Provisional
Probab=73.54 E-value=5.2 Score=42.48 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=38.1
Q ss_pred HHHHhc--CCCCEEEEccccCCC------------hhh--hccCcc-EEEcCCChHHHHHHHHHHhcCCce
Q 019874 118 IAKCKS--AKKPLVVAGCVPQGS------------RDL--KELEGV-SIVGVQQIDRVVEVVEETLKGHEV 171 (334)
Q Consensus 118 i~~~k~--~~~~VVv~GC~a~~~------------~~~--~~~~~d-~vvG~~e~~~i~e~l~~~~~g~~~ 171 (334)
.+.+|+ .+.+||+||.+|++. +.. ..-.+| +|.|.+| ..+.|+.+.+.+|...
T Consensus 140 ~~~~r~~f~~~pvilGGieaSlrR~aHYDyWsdkvr~sil~d~~aD~lvyGmgE-~~i~e~a~~l~~g~~~ 209 (707)
T PRK01254 140 TQRCKEAYKDVPVILGGIEASLRRIAHYDYWSDKVRRSVLVDAKADILMYGNAE-RPLVEVAHRLAMGEPI 209 (707)
T ss_pred HHHHHHHCCCCCEEeccccHHhhhhhhcchhhcccchhhcccCCCCEEEECccH-HHHHHHHHHHHcCCCh
Confidence 345555 467999999999987 332 223578 6889999 5789998887766653
No 189
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=73.03 E-value=36 Score=30.07 Aligned_cols=91 Identities=21% Similarity=0.247 Sum_probs=56.9
Q ss_pred ChhHHH-HHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccCCChhh---hccCc
Q 019874 71 NQSDSE-YMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDL---KELEG 146 (334)
Q Consensus 71 N~~Dse-~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~~~~~~---~~~~~ 146 (334)
|.-+-| .+...|+.+ .++||++||.--+=.+-.-+++.+.+++.-+.+++++++=-.-++.|-. .....
T Consensus 82 ~v~~le~i~~~al~rA-------~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~ 154 (179)
T COG1618 82 NVEGLEEIAIPALRRA-------LEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGG 154 (179)
T ss_pred eHHHHHHHhHHHHHHH-------hhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCC
Confidence 444455 455666554 2459999997665444344678888888888888888775556677743 33334
Q ss_pred cEE-EcCCChHHHHHHHHHHhcC
Q 019874 147 VSI-VGVQQIDRVVEVVEETLKG 168 (334)
Q Consensus 147 d~v-vG~~e~~~i~e~l~~~~~g 168 (334)
..+ +-+.+.+.++.-+...+++
T Consensus 155 v~v~lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 155 VYVFLTPENRNRILNEILSVLKG 177 (179)
T ss_pred EEEEEccchhhHHHHHHHHHhcc
Confidence 444 7776666665555444433
No 190
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=72.17 E-value=13 Score=38.17 Aligned_cols=58 Identities=28% Similarity=0.282 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCcEEEE-eeccccc--------------chHHHHHHHHHHHhcCCCCEEEEc
Q 019874 75 SEYMAGQLSAFGYALTDNSEEADIWLI-NTCTVKS--------------PSQSAMDTLIAKCKSAKKPLVVAG 132 (334)
Q Consensus 75 se~m~~~L~~~G~~~~~~~~~ADlvii-NTCtv~~--------------~a~~~~~~~i~~~k~~~~~VVv~G 132 (334)
.|.+..++...|..+++.+++||+|+. ||..-.. ..-..+.+.|+.+.++|++|.++=
T Consensus 280 ~esv~~hI~aaGg~~~~~~~~AD~vL~Vntp~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~l~~G~~VaiaD 352 (497)
T PF13552_consen 280 GESVKEHIRAAGGVLVDSPEEADLVLAVNTPGDGMTEESEQFANDDTPYRNLREFVDRIEEYLAKGKPVAIAD 352 (497)
T ss_pred HHHHHHHHHhcCCEEcCCCCCCCEEEEEecCCCccccccccccccccccccHHHHHHHHHHHHHcCCcEEEEE
Confidence 567889999999999999999998875 4443211 122456677788888898888753
No 191
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=72.16 E-value=6 Score=33.54 Aligned_cols=45 Identities=18% Similarity=0.379 Sum_probs=28.8
Q ss_pred EEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHH
Q 019874 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115 (334)
Q Consensus 63 i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~ 115 (334)
|+-+.|---+||. ++.|..++.++-+||+.+++. .||....+.+.
T Consensus 24 IEi~a~~sP~YDa-------ErfgI~~v~sPRhADiLlVTG-~vT~~~~e~lk 68 (148)
T COG3260 24 IEILAALSPRYDA-------ERFGIKVVNSPRHADILLVTG-AVTRQMREPLK 68 (148)
T ss_pred EEEeeccCcccch-------HHheeEEeCCCccccEEEEec-cccHHHHHHHH
Confidence 3333444455664 456888999999999998844 56654333333
No 192
>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional
Probab=70.45 E-value=8.1 Score=41.95 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=47.1
Q ss_pred ceEEEEeeCCCCChhHHHHHHHH-----HHhCCCe-eeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEc
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQ-----LSAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAG 132 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~-----L~~~G~~-~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~G 132 (334)
+.+|+.++|| .=.|.|.++-. ++..|++ .+..+..||+++|. =+|+......+.++.++.-+...-|.+|.
T Consensus 22 ~s~w~~~~~~--~cc~~E~~~~~~~~~D~~r~G~~~~~~sPr~aD~llv~-G~vt~~~~~~l~~~~~~~p~pk~via~G~ 98 (788)
T PRK13292 22 NSLWPMFFGL--SCCFVEMMTSFTSRYDISRFGAEVLRGTPREADLMVIA-GTVFKKMAPSILRLYEQMAEPKWVISMGS 98 (788)
T ss_pred CCCcceecCC--ccHHHHHHHhcCCcCCHHHcCCCccCCCcccceEEEEe-cCCcHhhHHHHHHHHHhCCCCCEEEEecc
Confidence 4567777776 33888887532 5667886 57889999999884 46665544444333333322222234677
Q ss_pred cccCCC
Q 019874 133 CVPQGS 138 (334)
Q Consensus 133 C~a~~~ 138 (334)
|..+.-
T Consensus 99 Ca~~GG 104 (788)
T PRK13292 99 CANSGG 104 (788)
T ss_pred cccCCC
Confidence 877643
No 193
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=69.49 E-value=9.4 Score=43.36 Aligned_cols=59 Identities=19% Similarity=0.317 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC--CCEEEEcccc
Q 019874 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVP 135 (334)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~--~~VVv~GC~a 135 (334)
-..+.-.|+..||++++- ...||+|.+ |+..+.. ...+.+.++++++.| .+|+|||-..
T Consensus 749 KnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~~diVgL-S~Lmt~t-~~~m~~vi~~L~~~g~~v~v~vGGa~~ 823 (1178)
T TIGR02082 749 KNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHNADVIGL-SGLITPS-LDEMKEVAEEMNRRGITIPLLIGGAAT 823 (1178)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEE-cCccccc-HHHHHHHHHHHHhcCCCceEEEecccc
Confidence 345667889999999764 357999999 5455444 356888889888876 5899999544
No 194
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.07 E-value=2.2 Score=35.89 Aligned_cols=25 Identities=28% Similarity=0.708 Sum_probs=18.4
Q ss_pred eccCCCCCCCcccccccc---CCccccC
Q 019874 197 PINVGCLGACTYCKTKHA---RGHLGSY 221 (334)
Q Consensus 197 ~isrGC~~~CsfC~ip~~---rG~~rsr 221 (334)
+..+||.|.|+||.+.+- .|+..+|
T Consensus 75 KFADG~GH~C~YCq~r~CARCGGrv~lr 102 (169)
T KOG3799|consen 75 KFADGCGHNCSYCQTRFCARCGGRVSLR 102 (169)
T ss_pred ccccccCcccchhhhhHHHhcCCeeeec
Confidence 567999999999998742 3554444
No 195
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=68.62 E-value=17 Score=30.29 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCeee-----C-------CCCCCcEEEEeeccccc-chHHHHHHHHHHHhcCCCCEEEEccccCCC
Q 019874 75 SEYMAGQLSAFGYALT-----D-------NSEEADIWLINTCTVKS-PSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (334)
Q Consensus 75 se~m~~~L~~~G~~~~-----~-------~~~~ADlviiNTCtv~~-~a~~~~~~~i~~~k~~~~~VVv~GC~a~~~ 138 (334)
.+.|+..|...|+++. . +..++|+++|-|.|.-. .....+...++.+..+++++.+=|++-+.+
T Consensus 18 A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~~~k~~avfgtgd~~~ 94 (140)
T TIGR01754 18 AFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGYKPSNVAIFGTGETQW 94 (140)
T ss_pred HHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcccCCEEEEEEcCCCCc
Confidence 3455566666787652 1 23457999998876522 222356667777766777777667664443
No 196
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=66.64 E-value=10 Score=33.03 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=41.8
Q ss_pred EeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEE
Q 019874 64 KTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (334)
Q Consensus 64 ~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv 130 (334)
-+-||+++..=-+.-...+++. -.+.+|++|||=-+=.+..=.-++..|.++-..|+||++
T Consensus 68 gs~gCrLD~~~La~A~~~l~~a------l~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt 128 (159)
T PF10649_consen 68 GSRGCRLDPGALAEASAALRRA------LAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLT 128 (159)
T ss_pred CCcccccCHHHHHHHHHHHHHH------HhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEE
Confidence 4569999887766666666554 235699999997653322224466777777788888876
No 197
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=66.03 E-value=13 Score=33.44 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=33.6
Q ss_pred HHHHHHHHH-hCCCeee--CC--------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEE
Q 019874 75 SEYMAGQLS-AFGYALT--DN--------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (334)
Q Consensus 75 se~m~~~L~-~~G~~~~--~~--------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv 130 (334)
.+.|+..|+ ..||+++ ++ .+.+|+||+|+|.- ..-....++.+.++-+.|..+|+
T Consensus 21 ~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~-~~l~~~~~~al~~~v~~Ggglv~ 86 (217)
T PF06283_consen 21 KKALAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGG-DELTDEQRAALRDYVENGGGLVG 86 (217)
T ss_dssp HHHHHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSC-CGS-HHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCCC-CcCCHHHHHHHHHHHHcCCCEEE
Confidence 566777777 6788875 22 25799999999972 11123344567777778876663
No 198
>PRK09271 flavodoxin; Provisional
Probab=63.52 E-value=26 Score=29.91 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCeee-------------CCCCCCcEEEEeecccccch-HHHHHHHHHHHhc---CCCCEEEEccc
Q 019874 75 SEYMAGQLSAFGYALT-------------DNSEEADIWLINTCTVKSPS-QSAMDTLIAKCKS---AKKPLVVAGCV 134 (334)
Q Consensus 75 se~m~~~L~~~G~~~~-------------~~~~~ADlviiNTCtv~~~a-~~~~~~~i~~~k~---~~~~VVv~GC~ 134 (334)
.+.|+..|.+.|+++. .+..++|+|+|-|.|.-... ...+...++.+.. +++++.|=|.+
T Consensus 18 A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 18 AREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred HHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 4556677777887651 12236799999888764321 1234444444433 56666655654
No 199
>COG1679 Predicted aconitase [General function prediction only]
Probab=63.40 E-value=13 Score=36.58 Aligned_cols=70 Identities=14% Similarity=0.249 Sum_probs=49.9
Q ss_pred eEEEEeeCCCCC-hhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccC
Q 019874 60 TIYMKTFGCSHN-QSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (334)
Q Consensus 60 ~~~i~t~GC~~N-~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~ 136 (334)
.+-++++||+|- ..+-..++..|...+ .+...++||-.++.|...+. ....++.+++.|.+||-.=|+..
T Consensus 289 epdli~iGcPHaS~~E~~~la~~l~~r~-----~~~~~~~~V~~sr~v~~~a~--~~G~~~~le~~g~~vv~DtC~vV 359 (403)
T COG1679 289 EPDLIALGCPHASLEELRRLAELLKGRK-----RPAGVPLYVTTSRAVYAQAR--KEGYLAKLEELGVKVVSDTCMVV 359 (403)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHHHhccC-----CCCCCCEEEEcCHHHHHHHh--hhhhHHHHHHcCCEEecCceeEE
Confidence 677999999995 455667788887664 34567899888888766543 22346777788888887778763
No 200
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=63.18 E-value=14 Score=42.01 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC--CCEEEEccccC
Q 019874 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLVVAGCVPQ 136 (334)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~--~~VVv~GC~a~ 136 (334)
-..+.-.|+..||++++- ...||+|.+ |+..+.. ...+...++++++.+ .+|+|||-..+
T Consensus 768 kniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~~diVgL-S~L~t~s-~~~m~~~i~~L~~~g~~v~v~vGGa~~s 843 (1229)
T PRK09490 768 KNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEENADIIGL-SGLITPS-LDEMVHVAKEMERQGFTIPLLIGGATTS 843 (1229)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEE-cCcchhh-HHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence 345567889999999764 357999999 5555443 356888888888775 68999995443
No 201
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=62.98 E-value=34 Score=27.43 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=43.5
Q ss_pred EEeeCCCCChhHHHHHHHHHHhCCCeee------------CCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEE
Q 019874 63 MKTFGCSHNQSDSEYMAGQLSAFGYALT------------DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (334)
Q Consensus 63 i~t~GC~~N~~Dse~m~~~L~~~G~~~~------------~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv 130 (334)
|.-+||..+..=.+.+...|...|+... ....+-|++++-|= .... +.+.+.++.++++|.+||+
T Consensus 3 I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~--sG~t-~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 3 VVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISN--SGET-DELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred EEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeC--CCCC-HHHHHHHHHHHHCCCeEEE
Confidence 4556666777778888888887775442 11234588877543 2222 4577888999999988764
No 202
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=60.59 E-value=55 Score=28.21 Aligned_cols=70 Identities=13% Similarity=0.242 Sum_probs=46.3
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeee-------CCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-E
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-------DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~-------~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v 130 (334)
++||+ +||..+..=.+.+...|...|.... ....+-|++|+-|.+ ... +.+.+.++.++++|.+|| +
T Consensus 31 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~s--G~t-~~~i~~~~~ak~~g~~ii~I 105 (179)
T TIGR03127 31 KRIFV--AGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGS--GET-ESLVTVAKKAKEIGATVAAI 105 (179)
T ss_pred CEEEE--EecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCC--CCc-HHHHHHHHHHHHCCCeEEEE
Confidence 45555 5555667777778888888886542 223456888886654 222 457778889999998765 6
Q ss_pred Ecc
Q 019874 131 AGC 133 (334)
Q Consensus 131 ~GC 133 (334)
++-
T Consensus 106 T~~ 108 (179)
T TIGR03127 106 TTN 108 (179)
T ss_pred ECC
Confidence 663
No 203
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=59.70 E-value=18 Score=32.13 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=42.1
Q ss_pred ceEEEEeeCCCCChhHHHHHHH-----HHHhCCCeee-CCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EE
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAG-----QLSAFGYALT-DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VA 131 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~-----~L~~~G~~~~-~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v~ 131 (334)
..+|..+||..= .|.|.++- .++..|+..+ .++.+||+.+|.- +|+.+-.. +...+.+...+-+.|| +|
T Consensus 35 ~Slw~~~~~~~C--C~iE~~a~~~~~yDleRfGi~~~~~sPR~ADillVeG-~VT~~m~~-~l~~~~e~~p~pK~VIAvG 110 (181)
T PRK14817 35 YSLFTYPFVTAC--CGMEYMTMASARYDSDRFGAAMPRFSPRQADLLMVVG-TVNCKQAP-ILQRVYEQMADPKWVMAFG 110 (181)
T ss_pred CCccccccccch--HHHHHHHhcCccccHHHhceeeccCCCcceeEEEEEe-cCCccchH-HHHHHHHHcccCCEEEEec
Confidence 345555555331 88887663 2455676664 7899999998854 66654322 3333333333333344 66
Q ss_pred ccccC
Q 019874 132 GCVPQ 136 (334)
Q Consensus 132 GC~a~ 136 (334)
-|...
T Consensus 111 aCA~~ 115 (181)
T PRK14817 111 VCASS 115 (181)
T ss_pred ccccc
Confidence 67554
No 204
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=58.82 E-value=19 Score=34.89 Aligned_cols=124 Identities=19% Similarity=0.349 Sum_probs=70.2
Q ss_pred cceeeeeecc--CCCCCCCccccccc-----------cCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC
Q 019874 190 NKFVEILPIN--VGCLGACTYCKTKH-----------ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256 (334)
Q Consensus 190 ~~~~~~v~is--rGC~~~CsfC~ip~-----------~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~ 256 (334)
+...+++.+. .||-..|+||.... .|+.+...+++++++-+..-... ++.|.+.- -+|+...
T Consensus 27 ~~~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~-~~rici~~---i~~p~~~- 101 (339)
T COG2516 27 RPTTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGN-FKRICIQQ---IAYPRAL- 101 (339)
T ss_pred ccceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhcc-ccccccee---ecccccc-
Confidence 3456677777 99999999997642 12223334455555554432222 34444421 2244332
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEe-ecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCC
Q 019874 257 VNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIV 327 (334)
Q Consensus 257 ~~l~~Ll~~l~~~i~~~~~~~ir~~-~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~ 327 (334)
.++..+++++.-.+ + ..+.++ -+.+....+++ ..+.+ .+..++.++++..+.++++...|..
T Consensus 102 ~d~~~i~~~~~~~~---~-~~itiseci~~~~~~~~l---~e~~k--lg~d~l~V~~daa~~~~~e~v~~~s 164 (339)
T COG2516 102 NDLKLILERLHIRL---G-DPITISECITAVSLKEEL---EEYRK--LGADYLGVAEDAANEELFEKVRKTS 164 (339)
T ss_pred chhhhhhhhhhhcc---C-CceehhhhhhcccchHHH---HHHHh--cchhhhhHHHHhcCHHHHHHHHhcc
Confidence 35666777765212 2 233332 13444434444 44554 3678999999999999999886543
No 205
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=57.82 E-value=20 Score=32.78 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=38.0
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccCCChhh-hccCccEEEcCCCh
Q 019874 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDL-KELEGVSIVGVQQI 155 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~~~~~~-~~~~~d~vvG~~e~ 155 (334)
...|+++++..|.-+.+ ...++.+++ ..+-||+.|+.+|..|+. ....++.+.|..=+
T Consensus 163 P~~Dvii~SaStlvN~T---~d~~Ld~ak-~ak~vvl~GPTa~l~pe~f~~~gvt~iag~kIi 221 (250)
T COG2014 163 PEVDVIIASASTLVNGT---LDMILDRAK-KAKLVVLTGPTAQLLPEFFKGTGVTHIAGTKII 221 (250)
T ss_pred ccccEEEEechhhhcCc---HHHHHhhhc-cCcEEEEeCCCcccchhHHhccCcceEEeeeec
Confidence 35799999866554443 222344333 335689999999999985 45556777776543
No 206
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=57.48 E-value=24 Score=32.72 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=25.5
Q ss_pred CCceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC
Q 019874 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN 92 (334)
Q Consensus 57 ~~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~ 92 (334)
|.++|.+.| |-...=.+.+.+.|++.||+++..
T Consensus 119 g~~RIalvT---PY~~~v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 119 GVRRISLLT---PYTPETSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred CCCEEEEEC---CCcHHHHHHHHHHHHhCCcEEeee
Confidence 457888777 466677888899999999988753
No 207
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=57.41 E-value=2.5e+02 Score=29.35 Aligned_cols=181 Identities=17% Similarity=0.220 Sum_probs=88.0
Q ss_pred CChhHHHHHHHHHHhCCCeeeCCCCCCc-EEEEeecccccc--hHHHHHHHHHHHhcC-CCCEEEEccccCC-Ch-----
Q 019874 70 HNQSDSEYMAGQLSAFGYALTDNSEEAD-IWLINTCTVKSP--SQSAMDTLIAKCKSA-KKPLVVAGCVPQG-SR----- 139 (334)
Q Consensus 70 ~N~~Dse~m~~~L~~~G~~~~~~~~~AD-lviiNTCtv~~~--a~~~~~~~i~~~k~~-~~~VVv~GC~a~~-~~----- 139 (334)
.+.-|.-.++..+.+.| || |++++-=+.+.. ......++++++.+. ..||-|||=.-+. ++
T Consensus 264 ~~~gdPve~a~~y~~~G---------adel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~ 334 (538)
T PLN02617 264 RNLGKPVELAGQYYKDG---------ADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYY 334 (538)
T ss_pred CcCCCHHHHHHHHHHcC---------CCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCcccccccccccc
Confidence 45667777888887766 44 445543333221 223456777777654 5799999865553 11
Q ss_pred ---h-hh---ccCcc-EEEcCCChHHH-----------HHHHHHHhc--CCc-eee-cccccCCCCCCccccccceeeee
Q 019874 140 ---D-LK---ELEGV-SIVGVQQIDRV-----------VEVVEETLK--GHE-VRL-LHRKKLPALDLPKVRRNKFVEIL 196 (334)
Q Consensus 140 ---~-~~---~~~~d-~vvG~~e~~~i-----------~e~l~~~~~--g~~-~~~-~~~~~~~~~~~p~~~~~~~~~~v 196 (334)
+ .+ ...+| +++|......- |+++++..+ |.. +-+ .+.......+ | .......+
T Consensus 335 ~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~-~---~~~~~~~~ 410 (538)
T PLN02617 335 SSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKD-P---SDVPFKTV 410 (538)
T ss_pred chHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccC-c---cccccccc
Confidence 1 22 23578 78887544322 345543321 332 211 1100000000 0 00011123
Q ss_pred eccCCCCCCCccccc-cccCC-c-cccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHh
Q 019874 197 PINVGCLGACTYCKT-KHARG-H-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (334)
Q Consensus 197 ~isrGC~~~CsfC~i-p~~rG-~-~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (334)
.+..-|++.=.||-. -++.| + .....+.+.+++++. .|+.||.+++-|-- |...+.++ +|++.+.+.
T Consensus 411 ~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~---~Gageil~t~id~D--Gt~~G~d~-~l~~~v~~~ 480 (538)
T PLN02617 411 KVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEE---LGAGEILLNCIDCD--GQGKGFDI-ELVKLVSDA 480 (538)
T ss_pred cccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHh---cCCCEEEEeecccc--ccccCcCH-HHHHHHHhh
Confidence 333323432223311 11222 2 455677666666654 69999999886531 22223344 788877754
No 208
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=57.39 E-value=95 Score=32.97 Aligned_cols=103 Identities=11% Similarity=0.113 Sum_probs=63.8
Q ss_pred CCceEEEEeeCCCC-ChhHHHHHHHHHHhCCCeeeCCC--------------CCCcEEEEeecccccchHHHHHHHHHHH
Q 019874 57 GTETIYMKTFGCSH-NQSDSEYMAGQLSAFGYALTDNS--------------EEADIWLINTCTVKSPSQSAMDTLIAKC 121 (334)
Q Consensus 57 ~~~~~~i~t~GC~~-N~~Dse~m~~~L~~~G~~~~~~~--------------~~ADlviiNTCtv~~~a~~~~~~~i~~~ 121 (334)
..++|++.|+|=-. ...=+.-..+.|..-||+.++.. ..||+++| |+--....+.+-.+++.+
T Consensus 493 ~rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~sga~i~vi--CssD~~Y~~~a~~~~~al 570 (619)
T TIGR00642 493 ERPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKKAGAQVAVL--CSSDKVYAQQGLEVAKAL 570 (619)
T ss_pred CCCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHhcCCCEEEE--eCCCcchHHHHHHHHHHH
Confidence 35789999999321 23334556778888899987542 46899999 875444445566777888
Q ss_pred hcCCC-CEEEEccccCCChhhhccCcc--EEEcCCChHHHHHHH
Q 019874 122 KSAKK-PLVVAGCVPQGSRDLKELEGV--SIVGVQQIDRVVEVV 162 (334)
Q Consensus 122 k~~~~-~VVv~GC~a~~~~~~~~~~~d--~vvG~~e~~~i~e~l 162 (334)
|..|. .|+++|--+. ..+.....+| +.+|..-++.+..+.
T Consensus 571 ~~ag~~~v~lAG~p~~-~~~~~~aGvd~fi~~g~d~~~~L~~~~ 613 (619)
T TIGR00642 571 KAAGAKALYLAGAFKE-FGDDAAEAIDGRLFMKMNVVDTLSSTL 613 (619)
T ss_pred HhCCCCEEEEeCCCcc-hhhHHhcCCcceeEcCCcHHHHHHHHH
Confidence 77775 6889996544 2222233456 345554444333333
No 209
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=54.41 E-value=68 Score=25.54 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=44.2
Q ss_pred EEeeCCCCChhHHHHHHHHHHhCCCeee--CC----------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-
Q 019874 63 MKTFGCSHNQSDSEYMAGQLSAFGYALT--DN----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV- 129 (334)
Q Consensus 63 i~t~GC~~N~~Dse~m~~~L~~~G~~~~--~~----------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV- 129 (334)
+.-+||..+..=...++..|...|+... ++ ..+-|++++-|-+ ... ..+.+.++.++++|.++|
T Consensus 16 i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~--g~~-~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 16 IYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFS--GET-KETVEAAEIAKERGAKVIA 92 (139)
T ss_pred EEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCC--CCC-HHHHHHHHHHHHcCCeEEE
Confidence 4445777777778888888888886442 11 2345777774433 333 357778888998888765
Q ss_pred EEcc
Q 019874 130 VAGC 133 (334)
Q Consensus 130 v~GC 133 (334)
+++-
T Consensus 93 iT~~ 96 (139)
T cd05013 93 ITDS 96 (139)
T ss_pred EcCC
Confidence 4553
No 210
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=52.18 E-value=22 Score=32.64 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCC
Q 019874 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (334)
Q Consensus 75 se~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~ 126 (334)
-..+...|+.+||+.++- ..+||+|..++ ++|.. -....++++++++.|.
T Consensus 121 k~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~d~v~~Sa-lMTtt-m~~~~~viE~L~eeGi 184 (227)
T COG5012 121 KNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKPDLVSMSA-LMTTT-MIGMKDVIELLKEEGI 184 (227)
T ss_pred HHHHHHHHHhCCcEEEecCCCCCHHHHHHHHHHcCCcEEechH-HHHHH-HHHHHHHHHHHHHcCC
Confidence 467788999999999763 34699997743 44432 2346678888888773
No 211
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=49.63 E-value=25 Score=27.86 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=31.7
Q ss_pred HHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcc
Q 019874 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (334)
Q Consensus 78 m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC 133 (334)
+...-...|.++++.+.+||+||+-.-+.-+.. . -.|++|++|+-
T Consensus 23 l~AAA~ka~l~ii~tp~dAeLviV~G~sipnd~--~---------l~GKkv~i~d~ 67 (103)
T COG3925 23 LGAAAHKAGLEIIDTPNDAELVIVFGSSIPNDS--A---------LNGKKVWIGDI 67 (103)
T ss_pred HHHHHHHCCCeeeCCCCcccEEEEeccccCCCc--c---------ccCceEEEecH
Confidence 334446679999999999999998665543321 1 14688998874
No 212
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=49.39 E-value=1.8e+02 Score=26.82 Aligned_cols=94 Identities=12% Similarity=0.172 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCC-ChhhhHHHHHHHHh
Q 019874 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKEIAEVLR 300 (334)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~-~i~~~l~~l~~l~~ 300 (334)
++++..++++.+.+.|++.+-+= + |.+. ..-.+.++++.+.++ ....+|+. .|.. ...+-+.-+..+..
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiK---v---g~~~-~~d~~~v~~vr~~~g--~~~~l~vD-an~~~~~~~a~~~~~~l~~ 154 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLK---V---GRDP-ARDVAVVAALREAVG--DDAELRVD-ANRGWTPKQAIRALRALED 154 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEe---c---CCCH-HHHHHHHHHHHHhcC--CCCEEEEe-CCCCcCHHHHHHHHHHHHh
Confidence 57889999999999999887762 1 1111 123477778776664 34567764 3432 22222222233332
Q ss_pred CCCCCCeEEEccCCcCHHHHHHhCCCC
Q 019874 301 HPCVYSFLHVPVQSGSDAVLSVSQKIV 327 (334)
Q Consensus 301 ~~~g~~~l~igiQSgsd~vLk~M~R~~ 327 (334)
.+..+|+-|+...+-+-++.+++..
T Consensus 155 --~~i~~iEeP~~~~d~~~~~~l~~~~ 179 (265)
T cd03315 155 --LGLDYVEQPLPADDLEGRAALARAT 179 (265)
T ss_pred --cCCCEEECCCCcccHHHHHHHHhhC
Confidence 4678899999887777777776654
No 213
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=48.52 E-value=1e+02 Score=26.54 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=47.3
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeee--C-----CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-E
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT--D-----NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~--~-----~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v 130 (334)
++|+|. ||..+..=.+.+...|...|.... . ...+-|++|+-|-+ ... +.+.+.++.++++|.+|| +
T Consensus 34 ~~I~i~--G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~s--G~t-~~~i~~~~~ak~~g~~iI~I 108 (179)
T cd05005 34 KRIFVY--GAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGS--GET-SSVVNAAEKAKKAGAKVVLI 108 (179)
T ss_pred CeEEEE--ecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCC--CCc-HHHHHHHHHHHHCCCeEEEE
Confidence 566665 555667777777788877776443 1 23456888775533 333 457778899999998765 7
Q ss_pred EccccC
Q 019874 131 AGCVPQ 136 (334)
Q Consensus 131 ~GC~a~ 136 (334)
++....
T Consensus 109 T~~~~s 114 (179)
T cd05005 109 TSNPDS 114 (179)
T ss_pred ECCCCC
Confidence 775443
No 214
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=48.09 E-value=32 Score=31.94 Aligned_cols=67 Identities=24% Similarity=0.353 Sum_probs=41.3
Q ss_pred eCCCCChhHHH-HHHHHHHhCC--C--eeeC---CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EEccccC
Q 019874 66 FGCSHNQSDSE-YMAGQLSAFG--Y--ALTD---NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCVPQ 136 (334)
Q Consensus 66 ~GC~~N~~Dse-~m~~~L~~~G--~--~~~~---~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v~GC~a~ 136 (334)
.||.|+..|.. ++...|.... | ..+| .++ .|+++|-- +|. .++-...++++|++-+.|| +|-|.++
T Consensus 15 ~GC~~slldl~E~L~dll~~~div~~~~l~D~keiPE-vDValVEG-sV~---~ee~lE~v~ElRekakivVA~GsCA~~ 89 (247)
T COG1941 15 SGCHMSLLDLYEKLLDLLEDADIVYCPTLVDEKEIPE-VDVALVEG-SVC---DEEELELVKELREKAKIVVALGSCAVT 89 (247)
T ss_pred cchHHHHHhHHHHHHHhhhhhcEEEeecccccccCCc-ccEEEEec-ccC---cHHHHHHHHHHHHhCcEEEEEecchhc
Confidence 38999888864 4555555331 1 1111 234 89998854 454 2456677888887765555 6668775
Q ss_pred C
Q 019874 137 G 137 (334)
Q Consensus 137 ~ 137 (334)
.
T Consensus 90 G 90 (247)
T COG1941 90 G 90 (247)
T ss_pred C
Confidence 4
No 215
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=47.45 E-value=30 Score=34.66 Aligned_cols=72 Identities=17% Similarity=0.365 Sum_probs=49.8
Q ss_pred CCCceEEEEeeCCCC-ChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHH--HHHHHhcCCCCEEEEc
Q 019874 56 PGTETIYMKTFGCSH-NQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT--LIAKCKSAKKPLVVAG 132 (334)
Q Consensus 56 ~~~~~~~i~t~GC~~-N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~--~i~~~k~~~~~VVv~G 132 (334)
+...++-++.+|||+ ...+-..+++.|+..+ .....++||..+=.|.. .+.+ .++++.+.|..|+..-
T Consensus 285 ~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~-----~~~~~~~~i~t~~~v~~----~a~~~G~~~~le~~G~~iv~dT 355 (400)
T PF04412_consen 285 AGDEKVDLVALGCPHLSLEELREIAELLEGRK-----VHPNVPLWITTSRAVYE----LAERMGYVERLEKAGVQIVTDT 355 (400)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHhCCC-----CCCCceEEEECCHHHHH----HHHhCCHHHHHHHcCCEEEccc
Confidence 445688999999999 4556777888887664 12346788664433433 2333 6677888899999888
Q ss_pred cccC
Q 019874 133 CVPQ 136 (334)
Q Consensus 133 C~a~ 136 (334)
|+..
T Consensus 356 C~~v 359 (400)
T PF04412_consen 356 CMVV 359 (400)
T ss_pred ccee
Confidence 9765
No 216
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=46.53 E-value=64 Score=30.10 Aligned_cols=84 Identities=23% Similarity=0.239 Sum_probs=56.0
Q ss_pred CChhHHHHHHHHHHhCCCeee--CCCC-------CCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE--ccccCCC
Q 019874 70 HNQSDSEYMAGQLSAFGYALT--DNSE-------EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA--GCVPQGS 138 (334)
Q Consensus 70 ~N~~Dse~m~~~L~~~G~~~~--~~~~-------~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~--GC~a~~~ 138 (334)
-|.+=....+..+.+.|-..+ +.++ -||.++||.=|.+....+.+...++.+.+.|+|||+= ||.++.+
T Consensus 15 TN~Vt~n~~AN~~LA~GasPiMa~~~~E~~e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~ 94 (246)
T PF02110_consen 15 TNYVTANDVANALLAIGASPIMAEAPEEVEEFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGVGASKF 94 (246)
T ss_dssp --TTTHHHHHHHHHHCTSEEEE--STTTHHHHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHH
T ss_pred cccchhhhHHHHHHHcCCCccccCCHHHHHHHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHH
Confidence 366667778899999998764 3333 4799999999988766677777788888899999853 8877765
Q ss_pred hh-h-----hccCccEEEcCC
Q 019874 139 RD-L-----KELEGVSIVGVQ 153 (334)
Q Consensus 139 ~~-~-----~~~~~d~vvG~~ 153 (334)
.. . ...+.++|=|+.
T Consensus 95 R~~~~~~LL~~~~~~vIrGN~ 115 (246)
T PF02110_consen 95 RTEFALELLNNYKPTVIRGNA 115 (246)
T ss_dssp HHHHHHHHHCHS--SEEEEEH
T ss_pred HHHHHHHHHHhCCCcEEEeCH
Confidence 52 1 123455666754
No 217
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=46.00 E-value=22 Score=37.11 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=34.0
Q ss_pred CcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccCCC
Q 019874 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (334)
Q Consensus 96 ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~~~ 138 (334)
.-+|.+-.|.=-....+.++.+++++.++|-.||++||+|-..
T Consensus 500 PGIia~vgC~nyp~g~k~v~~iaeefl~RnyiVvttGC~Am~i 542 (772)
T COG1152 500 PGIIAVIGCPNYPAGTKDVYKIAEEFLKRNYIVVTTGCIAMDI 542 (772)
T ss_pred CeEEEEecCCCCCcchhhHHHHHHHHHHcCeEEEecchhhhhc
Confidence 4577788997433345789999999999998899999999654
No 218
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=45.89 E-value=58 Score=30.13 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=26.6
Q ss_pred CCCChhHHHHH-HHHHHhCCCeeeCCCCCCcEEEEeecc
Q 019874 68 CSHNQSDSEYM-AGQLSAFGYALTDNSEEADIWLINTCT 105 (334)
Q Consensus 68 C~~N~~Dse~m-~~~L~~~G~~~~~~~~~ADlviiNTCt 105 (334)
|...++.+|.. .+.|...+ -.|.++++||+++|-..+
T Consensus 32 ~~~~~~~~e~~l~~~l~~s~-~~T~dp~eAdlF~vP~~~ 69 (302)
T PF03016_consen 32 YETSQYALEVILHEALLNSP-FRTDDPEEADLFFVPFYS 69 (302)
T ss_pred cccccchHHHHHHHHHHhCC-cEeCCHHHCeEEEEEccc
Confidence 77777777654 45665555 567899999999996433
No 219
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=45.11 E-value=2e+02 Score=24.66 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=35.8
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EEccccCCChhhhccCcc--EEEcCCChHHHHHH
Q 019874 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCVPQGSRDLKELEGV--SIVGVQQIDRVVEV 161 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v~GC~a~~~~~~~~~~~d--~vvG~~e~~~i~e~ 161 (334)
.+-|++|+-|.+= .+ +.+.+.++.++++|.++| +++-.... +... +| +.++..+.....+.
T Consensus 100 ~~~Dv~I~iS~SG--~t-~~~i~~~~~ak~~Ga~vI~IT~~~~s~---La~~-aD~~l~~~~~~~~~~~~~ 163 (177)
T cd05006 100 QPGDVLIGISTSG--NS-PNVLKALEAAKERGMKTIALTGRDGGK---LLEL-ADIEIHVPSDDTPRIQEV 163 (177)
T ss_pred CCCCEEEEEeCCC--CC-HHHHHHHHHHHHCCCEEEEEeCCCCCc---hhhh-CCEEEEeCCCChHHHHHH
Confidence 4568888866553 22 357788899999998765 66643222 2222 45 34555565544443
No 220
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=44.92 E-value=24 Score=27.17 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCeeeCCCC-----CCcEEEEe
Q 019874 77 YMAGQLSAFGYALTDNSE-----EADIWLIN 102 (334)
Q Consensus 77 ~m~~~L~~~G~~~~~~~~-----~ADlviiN 102 (334)
.+...|++.||++++-.. .+|.+||+
T Consensus 12 ~v~~~L~~~GyeVv~l~~~~~~~~~daiVvt 42 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENEQDLQNVDAIVVT 42 (80)
T ss_pred HHHHHHHHCCCEEEecCCccccCCcCEEEEE
Confidence 478999999999986533 46777663
No 221
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.54 E-value=75 Score=24.67 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=22.4
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 019874 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~ 131 (334)
..||+||+-|=.+-..+ +..+-+.+++.++|++..
T Consensus 47 ~~aD~VIv~t~~vsH~~---~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 47 KKADLVIVFTDYVSHNA---MWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred CCCCEEEEEeCCcChHH---HHHHHHHHHHcCCcEEEE
Confidence 46899999876554433 333334556778888764
No 222
>PRK06242 flavodoxin; Provisional
Probab=43.94 E-value=50 Score=27.39 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=37.4
Q ss_pred HHHHHHHHHhC-CCeee-------CCCCCCcEEEEeecccccchHHHHHHHHHHHhc-CCCCEEEEccccCC
Q 019874 75 SEYMAGQLSAF-GYALT-------DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKS-AKKPLVVAGCVPQG 137 (334)
Q Consensus 75 se~m~~~L~~~-G~~~~-------~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~-~~~~VVv~GC~a~~ 137 (334)
|+.|+..+++. +.++. ++..++|.|++-|.+........+...++++.. .|+++++-|.+.+.
T Consensus 15 T~~~A~~ia~~l~~~~~~i~~~~~~~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~~ 86 (150)
T PRK06242 15 TEKIAKAIAEVLDAEVIDPGDVNPEDLSEYDLIGFGSGIYFGKFHKSLLKLIEKLPPVSGKKAFIFSTSGLP 86 (150)
T ss_pred HHHHHHHHHHhcCcEEecHHHCCcccHhHCCEEEEeCchhcCCcCHHHHHHHHhhhhhcCCeEEEEECCCCC
Confidence 55566655432 22222 234678999998876544333456667776644 56777776766653
No 223
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=42.35 E-value=1.1e+02 Score=28.98 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=48.6
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeee--C----------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCC
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT--D----------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~--~----------~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~ 126 (334)
++|||...| .+..=.+.++..|...|+... + ...+-|++++-|-+ ..+ +.+.+.++.++++|.
T Consensus 43 ~~I~i~G~G--~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~s--G~t-~~~~~~~~~ak~~g~ 117 (321)
T PRK11543 43 GKVVVSGIG--KSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYS--GGA-KELDLIIPRLEDKSI 117 (321)
T ss_pred CcEEEEecC--hhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEEeCC--CCc-HHHHHHHHHHHHcCC
Confidence 467776666 777778888899988898543 1 13456888875433 333 457888899999998
Q ss_pred CEE-EEcc
Q 019874 127 PLV-VAGC 133 (334)
Q Consensus 127 ~VV-v~GC 133 (334)
+|| +||-
T Consensus 118 ~vI~iT~~ 125 (321)
T PRK11543 118 ALLAMTGK 125 (321)
T ss_pred eEEEEECC
Confidence 766 6663
No 224
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.32 E-value=1.1e+02 Score=26.02 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=41.6
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEe-----eccccc--chHHHHHHHHHHHhc--CCCCEEE
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-----TCTVKS--PSQSAMDTLIAKCKS--AKKPLVV 130 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiN-----TCtv~~--~a~~~~~~~i~~~k~--~~~~VVv 130 (334)
.+.+..+|+.=. .+..|...|.. . ....+|+|+|+ .+.... ...+.+.++++++++ .+.+|++
T Consensus 40 ~~~~~n~g~~G~--t~~~~~~~l~~----~--~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv 111 (191)
T cd01836 40 GVRWRLFAKTGA--TSADLLRQLAP----L--PETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVV 111 (191)
T ss_pred ceEEEEEecCCc--CHHHHHHHHHh----c--ccCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 466778876444 46667777765 1 23578999994 222221 123566677788877 5678888
Q ss_pred Ecc
Q 019874 131 AGC 133 (334)
Q Consensus 131 ~GC 133 (334)
.+.
T Consensus 112 ~~~ 114 (191)
T cd01836 112 TAV 114 (191)
T ss_pred ECC
Confidence 775
No 225
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=41.84 E-value=91 Score=29.00 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=46.6
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhC
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (334)
+...||...-|||+. | ...|+.|.+-++.|++.|.-||-| |+.++ -..+..+..+|+.+.+.+
T Consensus 149 ~vRGYVScvvGCPye----------G---~v~P~kVa~V~k~ly~mGCyEiSL-GDTIG---vGTpgtm~~ML~~Vmk~v 211 (316)
T KOG2368|consen 149 RVRGYVSCVVGCPYE----------G---AVQPSKVAEVVKKLYEMGCYEISL-GDTIG---VGTPGTMKRMLDAVMKVV 211 (316)
T ss_pred ccceEEEEEecCCcc----------C---CcCHHHHHHHHHHHHhCCcEEEec-ccccc---cCCchhHHHHHHHHHHhC
Confidence 345688888899863 3 346788888899999999999987 54443 333446778888877766
Q ss_pred C
Q 019874 271 P 271 (334)
Q Consensus 271 ~ 271 (334)
|
T Consensus 212 P 212 (316)
T KOG2368|consen 212 P 212 (316)
T ss_pred C
Confidence 6
No 226
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=41.81 E-value=1.7e+02 Score=23.10 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=32.6
Q ss_pred ceEEEEee-CCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeeccccc-ch--HHHHHHHHHHH-hcCCCCEEEE
Q 019874 59 ETIYMKTF-GCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PS--QSAMDTLIAKC-KSAKKPLVVA 131 (334)
Q Consensus 59 ~~~~i~t~-GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~-~a--~~~~~~~i~~~-k~~~~~VVv~ 131 (334)
+-+.|.|- ||+=-.+--. ..+|.. .+.||.|-+.||.+.. +. -..+..+.++. .+.+++||+|
T Consensus 29 ~viaf~tCGgCpGrlvpn~--~k~lk~--------~egaeaihfasCml~~~PkCpy~~~eei~Kk~ie~~~i~Vv~g 96 (101)
T COG5561 29 RVIAFITCGGCPGRLVPNQ--IKQLKG--------KEGAEAIHFASCMLAFKPKCPYASAEEIAKKEIEKMGIKVVMG 96 (101)
T ss_pred EEEEEEEcCCCCcchhHHH--HHHHhh--------ccccceeeeeeeeeccCCCCCccCHHHHHHHHHHHhCCcEEee
Confidence 45677777 8886433211 122221 1347888888888766 20 01122222322 3446778775
No 227
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=41.29 E-value=76 Score=28.96 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCC
Q 019874 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (334)
Q Consensus 225 ~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g 304 (334)
+-++-++.+.+.|++++.+++-|-. -|.+ .-.+++++|.+... ..+.++- -... ++++..+.. .|
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~---~n~~~i~~i~~~~~----~~v~vgG-Gir~----~edv~~~l~--~G 100 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAI-MGRG---DNDEAIRELAAAWP----LGLWVDG-GIRS----LENAQEWLK--RG 100 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccc-cCCC---ccHHHHHHHHHhCC----CCEEEec-CcCC----HHHHHHHHH--cC
Confidence 4555566677789999999988743 3432 33578888876431 1222321 1111 133455554 47
Q ss_pred CCeEEEccCCcCHHHHHHhCCCC
Q 019874 305 YSFLHVPVQSGSDAVLSVSQKIV 327 (334)
Q Consensus 305 ~~~l~igiQSgsd~vLk~M~R~~ 327 (334)
+.++-||-++.+++.++.+=..|
T Consensus 101 a~~viigt~~~~~~~~~~~~~~~ 123 (233)
T cd04723 101 ASRVIVGTETLPSDDDEDRLAAL 123 (233)
T ss_pred CCeEEEcceeccchHHHHHHHhc
Confidence 88999999998755555544444
No 228
>PRK06703 flavodoxin; Provisional
Probab=41.03 E-value=74 Score=26.58 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=34.7
Q ss_pred HHHHHH----HHHHhCCCeee--C-------CCCCCcEEEEeeccccc-chHHHHHHHHHHHh---cCCCCEEEEccccC
Q 019874 74 DSEYMA----GQLSAFGYALT--D-------NSEEADIWLINTCTVKS-PSQSAMDTLIAKCK---SAKKPLVVAGCVPQ 136 (334)
Q Consensus 74 Dse~m~----~~L~~~G~~~~--~-------~~~~ADlviiNTCtv~~-~a~~~~~~~i~~~k---~~~~~VVv~GC~a~ 136 (334)
-++.|+ ..|...|+++. + +..++|+|+|-|.|.-. .....+...+..++ -+++++.+=|+..+
T Consensus 14 nT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~ 93 (151)
T PRK06703 14 NTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDT 93 (151)
T ss_pred hHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCC
Confidence 355555 44555676542 1 23468999997766532 11223444444443 23566766676555
Q ss_pred CCh
Q 019874 137 GSR 139 (334)
Q Consensus 137 ~~~ 139 (334)
.++
T Consensus 94 ~y~ 96 (151)
T PRK06703 94 AYP 96 (151)
T ss_pred ChH
Confidence 443
No 229
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=40.91 E-value=2.1e+02 Score=24.11 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=25.2
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EEcc
Q 019874 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGC 133 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v~GC 133 (334)
.+-|++++-|-+=. . +.+.++++.++++|.++| +++.
T Consensus 78 ~~~D~~i~iS~sG~--t-~~~~~~~~~a~~~g~~ii~iT~~ 115 (154)
T TIGR00441 78 QKGDVLLGISTSGN--S-KNVLKAIEAAKDKGMKTITLAGK 115 (154)
T ss_pred CCCCEEEEEcCCCC--C-HHHHHHHHHHHHCCCEEEEEeCC
Confidence 34588888665422 2 357778899999997765 6663
No 230
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=40.57 E-value=1.5e+02 Score=27.44 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=39.3
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~ 131 (334)
.++.+...|+.++..+-+.+...+.+ -.+++|++++++..-.....+.+..+++.+++.|++|++-
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~g~~v~~D 163 (303)
T TIGR03168 98 EETELNEPGPEISEEELEQLLEKLRE-------LLASGDIVVISGSLPPGVPPDFYAQLIAIARKRGAKVILD 163 (303)
T ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHH-------hccCCCEEEEeCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 44555556777666655545444432 1357899999764321122344666777788888877654
No 231
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=40.26 E-value=1.2e+02 Score=27.65 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=44.5
Q ss_pred EEeeCCCCChhHHHHHHHHHHhCCCeee------------CCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-
Q 019874 63 MKTFGCSHNQSDSEYMAGQLSAFGYALT------------DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV- 129 (334)
Q Consensus 63 i~t~GC~~N~~Dse~m~~~L~~~G~~~~------------~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV- 129 (334)
|.-+||..+..=.+.+...|...|.... ....+-|++++-|=+ ... +...+.++.++++|.++|
T Consensus 3 I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~s--G~t-~~~~~~~~~a~~~g~~ii~ 79 (268)
T TIGR00393 3 LVIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYS--GES-LELLNLIPHLKRLSHKIIA 79 (268)
T ss_pred EEEEecChHHHHHHHHHHHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEEEeCC--CCC-HHHHHHHHHHHHcCCcEEE
Confidence 3445666777777888888888886552 123456888775432 332 467788899999998766
Q ss_pred EEc
Q 019874 130 VAG 132 (334)
Q Consensus 130 v~G 132 (334)
+++
T Consensus 80 iT~ 82 (268)
T TIGR00393 80 FTG 82 (268)
T ss_pred EEC
Confidence 555
No 232
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=40.18 E-value=14 Score=36.99 Aligned_cols=16 Identities=38% Similarity=0.987 Sum_probs=14.0
Q ss_pred cCCCCCCCcccccccc
Q 019874 199 NVGCLGACTYCKTKHA 214 (334)
Q Consensus 199 srGC~~~CsfC~ip~~ 214 (334)
.-|||.+|.||..|..
T Consensus 6 ~~gC~~~C~wC~~p~~ 21 (404)
T TIGR03278 6 GIDCRGFCRYCYFKKV 21 (404)
T ss_pred CCCCCCcCCCCCCCCC
Confidence 4699999999998866
No 233
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=39.68 E-value=1.9e+02 Score=27.51 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=41.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeeccCC---CCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCC
Q 019874 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTG---AYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287 (334)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~---~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~ 287 (334)
|-++..+|.+.++.+.+.|+++|.++..|.- .++.. -.+-.+|++-+..... +...+.. ..||..
T Consensus 87 ~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~-~~~s~dLv~lik~~~~--~~f~i~~-A~~Pe~ 154 (291)
T COG0685 87 RDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGK-DLYSVDLVELIKKMRG--GIFDIGV-AAYPEG 154 (291)
T ss_pred cCCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCcc-ccCHHHHHHHHHHhcC--CeEEEEE-EeCCCC
Confidence 3458899999999999999999998877763 22220 1245678887764322 2244443 356653
No 234
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=39.62 E-value=1.1e+02 Score=26.64 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=35.3
Q ss_pred ChhH-HHHHHHHHHhCCCeee---------CCCCCCcEEEEeecccccchHHHHHHHHHHHh--cCCCCEEEEccc
Q 019874 71 NQSD-SEYMAGQLSAFGYALT---------DNSEEADIWLINTCTVKSPSQSAMDTLIAKCK--SAKKPLVVAGCV 134 (334)
Q Consensus 71 N~~D-se~m~~~L~~~G~~~~---------~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k--~~~~~VVv~GC~ 134 (334)
|..+ .+.|+..|.. |.++. .+..++|.|||-+.+........+...+++.. -.+++|++=+|.
T Consensus 13 ~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~G~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 13 QTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIRYGHFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred hHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECccccCCcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 4444 5566667765 65432 12346899999887644333344555555432 235666665554
No 235
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=39.44 E-value=26 Score=32.48 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=30.6
Q ss_pred CceEEEE---eeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEE
Q 019874 58 TETIYMK---TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101 (334)
Q Consensus 58 ~~~~~i~---t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlvii 101 (334)
.++||+. |-++.+|.-. ..+...|.+.||.++++|++|-.|+=
T Consensus 50 ~ktVyv~vrNTSd~~~~~l~-~~i~~~L~~kGY~iv~~P~~A~Y~lQ 95 (243)
T PRK13731 50 ERTVFLQIKNTSDKDMSGLQ-GKIADAVKAKGYQVVTSPDKAYYWIQ 95 (243)
T ss_pred CceEEEEEeeCCCcchHHHH-HHHHHHHHhCCeEEecChhhceeeee
Confidence 6788875 3443333222 34677899999999999999988853
No 236
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=39.27 E-value=80 Score=28.79 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCeee----CC---------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcccc
Q 019874 75 SEYMAGQLSAFGYALT----DN---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVP 135 (334)
Q Consensus 75 se~m~~~L~~~G~~~~----~~---------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a 135 (334)
.+.|+..|++.||++. ++ ....|+||..+|+-...-.+...+.+.++-+.|.-+| |+|+
T Consensus 25 ~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~~l~~eq~~~l~~~V~~GgGlv--~lHs 96 (215)
T cd03142 25 HGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHDEVKDEIVERVHRRVLDGMGLI--VLHS 96 (215)
T ss_pred HHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcCcCCHHHHHHHHHHHHcCCCEE--EECC
Confidence 6789999999999874 22 3478999996665322211222334555555665444 3554
No 237
>PRK07308 flavodoxin; Validated
Probab=38.86 E-value=2.1e+02 Score=23.63 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCeee--C-------CCCCCcEEEEeecccc-cchHHHHHHHHHHHhcC---CCCEEEEcccc
Q 019874 75 SEYMAGQLSAFGYALT--D-------NSEEADIWLINTCTVK-SPSQSAMDTLIAKCKSA---KKPLVVAGCVP 135 (334)
Q Consensus 75 se~m~~~L~~~G~~~~--~-------~~~~ADlviiNTCtv~-~~a~~~~~~~i~~~k~~---~~~VVv~GC~a 135 (334)
.+.|+..|.+.|+... + +..++|+|++-|.|.- ......+...++.++.. |+++.|-|..-
T Consensus 19 A~~ia~~l~~~g~~~~~~~~~~~~~~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~~~vfG~Gd 92 (146)
T PRK07308 19 ADIVADKLRELGHDVDVDECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLADLDLSGKIYGVVGSGD 92 (146)
T ss_pred HHHHHHHHHhCCCceEEEecccCCHhHhccCCEEEEEeCccCCCCCCHHHHHHHHHHhcCCCCCCEEEEEeeCC
Confidence 4455666666776431 1 1246789988776654 22223455555555432 45555555543
No 238
>TIGR03555 F420_mer 5,10-methylenetetrahydromethanopterin reductase. Members of this protein family are 5,10-methylenetetrahydromethanopterin reductase, an F420-dependent enzyme of methanogenesis. It is restricted to the Archaea.
Probab=38.71 E-value=2.8e+02 Score=26.45 Aligned_cols=89 Identities=11% Similarity=0.211 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeec-------CCCChhhhHH
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLK 293 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~-------~p~~i~~~l~ 293 (334)
.+++++++.++..-+.|+..+|+.. +.+.+ ...-++-.+.... .+|++++. ||..+-+..-
T Consensus 9 ~~~~~~~~~a~~AE~~Gfd~~w~~e-h~~~~------~~~~~la~~a~~T-----~ri~lgt~v~~~~~r~P~~~A~~~a 76 (325)
T TIGR03555 9 DPITKIAYYVKLAEDNGFEYAWITD-HYNNR------NVYSTLTLLALNT-----NTIKLGPGVTNPYTRSPAITASAIA 76 (325)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc-ccCcc------CHHHHHHHHHHhc-----CeeEEeeeeccCCCCCHHHHHHHHH
Confidence 4688888888877778999998854 43222 2345666666532 46777652 2333333333
Q ss_pred HHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCC
Q 019874 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKI 326 (334)
Q Consensus 294 ~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~ 326 (334)
.|+.|.. .++.+|+=+|+......++..
T Consensus 77 tLd~ls~-----GR~~lGlg~G~~~~~~~~G~~ 104 (325)
T TIGR03555 77 TLDEISG-----GRAVLGIGPGDKATFDAMGIE 104 (325)
T ss_pred HHHHHcC-----CCEEEEecCCcHHHHHHcCCC
Confidence 3444321 367888888887777766543
No 239
>PRK10494 hypothetical protein; Provisional
Probab=38.48 E-value=80 Score=29.52 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccc------------hHHHHHHHHHHHhc-CCCCEEEEccc
Q 019874 74 DSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP------------SQSAMDTLIAKCKS-AKKPLVVAGCV 134 (334)
Q Consensus 74 Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~------------a~~~~~~~i~~~k~-~~~~VVv~GC~ 134 (334)
=+..+...|+. .|...+...++|.|||=.++.... +-.++...++-+++ .+.+||++|=.
T Consensus 58 ~~~~Ll~~LE~-~y~~~~~~~~~d~IVVLGgG~~~~~~~~~~~~l~~~~~~Rl~~a~~L~r~~~~~~ii~SGg~ 130 (259)
T PRK10494 58 VADRLLRPIES-RYPTWNGSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLTEGIRLWRANPGAKLIFTGGA 130 (259)
T ss_pred HHHHHHHHHhc-ccCCCCCCCCCCEEEEcCCCcCCCCCCCCcHhHhhhHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 35667778874 465444456789999988875421 11355555566665 35678888844
No 240
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.31 E-value=1.4e+02 Score=28.08 Aligned_cols=64 Identities=8% Similarity=0.078 Sum_probs=39.7
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcC-CCC
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-KKP 127 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~-~~~ 127 (334)
|.++.|..-..+....=.+.+.+.|++.|++...+..++|++++- -.+-.+.+.++++... +.+
T Consensus 2 ~~~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~~~~~D~vi~l------GGDGT~L~a~~~~~~~~~~p 66 (264)
T PRK03501 2 RRNLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDHPKNANIIVSI------GGDGTFLQAVRKTGFREDCL 66 (264)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcCCCCccEEEEE------CCcHHHHHHHHHhcccCCCe
Confidence 346777766656333334557778889999988766779988762 1233566666665433 344
No 241
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=37.92 E-value=3.4e+02 Score=26.64 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=58.9
Q ss_pred eeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCC
Q 019874 193 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~ 272 (334)
.+++...-|||+. |+ -+++.+++-++.+.+.|+.+|.|.| .+ |.-.+..+.+|++.|.+.++
T Consensus 179 ~~~is~~fg~p~~----------~r---~~~~~l~~~~~~~~~~Gad~I~l~D-T~---G~a~P~~v~~lv~~l~~~~~- 240 (347)
T PLN02746 179 RGYVSCVVGCPIE----------GP---VPPSKVAYVAKELYDMGCYEISLGD-TI---GVGTPGTVVPMLEAVMAVVP- 240 (347)
T ss_pred EEEEEeeecCCcc----------CC---CCHHHHHHHHHHHHHcCCCEEEecC-Cc---CCcCHHHHHHHHHHHHHhCC-
Confidence 3455566677542 11 3789999999999999999999854 22 33334568899999877654
Q ss_pred CCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCC
Q 019874 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 314 (334)
Q Consensus 273 ~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQS 314 (334)
...+.++.=|-..+.- ...|+.+ .+|+.+++-.+-.
T Consensus 241 --~~~i~~H~Hnd~GlA~-AN~lAA~---~aGa~~vd~sv~G 276 (347)
T PLN02746 241 --VDKLAVHFHDTYGQAL-ANILVSL---QMGISTVDSSVAG 276 (347)
T ss_pred --CCeEEEEECCCCChHH-HHHHHHH---HhCCCEEEEeccc
Confidence 2235554222111110 0113333 3588888877763
No 242
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=37.70 E-value=1.5e+02 Score=27.41 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=46.2
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeC------------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCC
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~------------~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~ 125 (334)
.++|||...| .+..=.+.+...|...|..... ...+-|++|+- |+.... +.+...++.++++|
T Consensus 128 a~~I~i~G~G--~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~i--S~sg~~-~~~~~~~~~ak~~g 202 (278)
T PRK11557 128 ARRIILTGIG--ASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAI--SYSGER-RELNLAADEALRVG 202 (278)
T ss_pred CCeEEEEecC--hhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEE--cCCCCC-HHHHHHHHHHHHcC
Confidence 4566665555 6666677777888888865432 23456877763 444443 35777888999999
Q ss_pred CCEE-EEcc
Q 019874 126 KPLV-VAGC 133 (334)
Q Consensus 126 ~~VV-v~GC 133 (334)
.+|| +|+-
T Consensus 203 a~iI~IT~~ 211 (278)
T PRK11557 203 AKVLAITGF 211 (278)
T ss_pred CCEEEEcCC
Confidence 8766 5554
No 243
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=37.54 E-value=1.8e+02 Score=27.10 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=37.8
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~ 131 (334)
.++++...|+.....+-+.+...+. ..+.+|++++++..........+..+++.+++.|.+|++=
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~i~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D 166 (309)
T PRK10294 102 EQYRFVMPGAALNEDEFRQLEEQVL--------EIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIID 166 (309)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHH--------hcCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEe
Confidence 4566777787654444333322221 1256899988764432222345667778888888887764
No 244
>PRK03094 hypothetical protein; Provisional
Probab=37.53 E-value=49 Score=25.44 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=19.2
Q ss_pred HHHHHHhCCCeeeCCC-----CCCcEEEEe
Q 019874 78 MAGQLSAFGYALTDNS-----EEADIWLIN 102 (334)
Q Consensus 78 m~~~L~~~G~~~~~~~-----~~ADlviiN 102 (334)
+...|++.||++++-. ...|.+||.
T Consensus 13 i~~~L~~~GYeVv~l~~~~~~~~~Da~Vit 42 (80)
T PRK03094 13 VQQALKQKGYEVVQLRSEQDAQGCDCCVVT 42 (80)
T ss_pred HHHHHHHCCCEEEecCcccccCCcCEEEEe
Confidence 8899999999997542 346777773
No 245
>PRK05568 flavodoxin; Provisional
Probab=37.35 E-value=93 Score=25.47 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=26.1
Q ss_pred CCCcEEEEeecccccch--HHHHHHHHHHHhc--CCCCEEEEccccC
Q 019874 94 EEADIWLINTCTVKSPS--QSAMDTLIAKCKS--AKKPLVVAGCVPQ 136 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~a--~~~~~~~i~~~k~--~~~~VVv~GC~a~ 136 (334)
.++|.+++-|.+.-... ...+...++++.. +++++++-|++.+
T Consensus 47 ~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t~G~ 93 (142)
T PRK05568 47 KGADVVALGSPAMGDEVLEEGEMEPFVESISSLVKGKKLVLFGSYGW 93 (142)
T ss_pred HhCCEEEEECCccCcccccchhHHHHHHHhhhhhCCCEEEEEEccCC
Confidence 57899999888753321 1234455555432 4677777777554
No 246
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=36.16 E-value=1.1e+02 Score=24.07 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=41.8
Q ss_pred EEEeecccccchHHHHHHHHH-HHhcCCC--CEEEEccccCC--Chhhh-ccCcc-EEEcCCChHHHHHHHHHHhc
Q 019874 99 WLINTCTVKSPSQSAMDTLIA-KCKSAKK--PLVVAGCVPQG--SRDLK-ELEGV-SIVGVQQIDRVVEVVEETLK 167 (334)
Q Consensus 99 viiNTCtv~~~a~~~~~~~i~-~~k~~~~--~VVv~GC~a~~--~~~~~-~~~~d-~vvG~~e~~~i~e~l~~~~~ 167 (334)
|-..||.+-..| +++++.++ +++++|. .|+-+||+.-= .|-.. ..+.. ++.+.-..+.++++++..+.
T Consensus 5 Vc~gT~ciAaGA-~~V~~al~~ei~~~gl~v~v~~tGC~G~C~~ePlV~V~~p~g~v~Y~~V~~edv~~Iv~~~~~ 79 (92)
T cd03063 5 VPRDAAALALGA-DEVAEAIEAEAAARGLAATIVRNGSRGMYWLEPLVEVETPGGRVAYGPVTPADVASLLDAGAL 79 (92)
T ss_pred EeCChhhhhhCH-HHHHHHHHHHHHHcCCeEEEEEecCceecCCCCEEEEEeCCCcEEEEeCCHHHHHHHHHHHhh
Confidence 334577765555 45665554 4566663 67888998843 34222 11334 66777777889999987543
No 247
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=35.68 E-value=40 Score=27.92 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=29.8
Q ss_pred CCCCceEEEEee---CCCCChhHHHH----HHHHHHhCCCeeeCCCCCCcEEEE
Q 019874 55 IPGTETIYMKTF---GCSHNQSDSEY----MAGQLSAFGYALTDNSEEADIWLI 101 (334)
Q Consensus 55 ~~~~~~~~i~t~---GC~~N~~Dse~----m~~~L~~~G~~~~~~~~~ADlvii 101 (334)
...-+++.+..- -=..|..+-+. +...|++.||..+ .+.||++|-
T Consensus 14 f~~ykTy~~~~~~~~~~~~~~~~~~~i~~~v~~~L~~~G~~~~--~~~aDl~V~ 65 (151)
T PF13590_consen 14 FSQYKTYAFVPSSSDPAQSNPLDDQRIQDAVEQELAAKGYRRV--PENADLLVS 65 (151)
T ss_pred CCCCCeEEEecCCcCccccCcHHHHHHHHHHHHHHHHCCCeec--ccCCCEEEE
Confidence 445567776665 22445544444 4567788999997 678999965
No 248
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=35.50 E-value=2.2e+02 Score=26.14 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=39.8
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~ 131 (334)
...+...|+.++..+.+.+...+.+. .+++|+++++.+............+++.+++.+++|++-
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~i~~D 164 (289)
T cd01164 100 ETEINEPGPEISEEELEALLEKLKAL-------LKKGDIVVLSGSLPPGVPADFYAELVRLAREKGARVILD 164 (289)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-------cCCCCEEEEeCCCCCCcCHHHHHHHHHHHHHcCCeEEEE
Confidence 34455568877766666665554322 257999999776543222234556677777778777653
No 249
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.25 E-value=2.5e+02 Score=26.34 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=36.2
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhc--CCCCEE
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPLV 129 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~--~~~~VV 129 (334)
++.|.+-.-+....-.+.+...|++.|+++ +.+++|++++- -.+-.+.+.++.+.. .++||+
T Consensus 2 ~i~Ii~~~~~~~~~~~~~l~~~l~~~g~~~--~~~~~Dlvi~i------GGDGT~L~a~~~~~~~~~~iPil 65 (265)
T PRK04885 2 KVAIISNGDPKSKRVASKLKKYLKDFGFIL--DEKNPDIVISV------GGDGTLLSAFHRYENQLDKVRFV 65 (265)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCcc--CCcCCCEEEEE------CCcHHHHHHHHHhcccCCCCeEE
Confidence 467776532222222555667777889884 34578998762 223456666776655 455544
No 250
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=34.88 E-value=1.8e+02 Score=21.64 Aligned_cols=70 Identities=10% Similarity=0.129 Sum_probs=48.9
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeeccccc---chHHHHHHHHHHHhcCCCCEEEEcccc
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS---PSQSAMDTLIAKCKSAKKPLVVAGCVP 135 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~---~a~~~~~~~i~~~k~~~~~VVv~GC~a 135 (334)
.+.+..+.-+++....+.+...+.+.- . +..+.++++-..+.. .+..-+.+..++++.+|..+.+.|.-.
T Consensus 8 ~~~ii~l~G~l~~~~~~~~~~~~~~~~----~--~~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~~ 80 (99)
T cd07043 8 GVLVVRLSGELDAATAPELREALEELL----A--EGPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVSP 80 (99)
T ss_pred CEEEEEEeceecccchHHHHHHHHHHH----H--cCCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 466666666899888888888876531 1 125778888776654 244556677778888888999988643
No 251
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=34.46 E-value=2.8e+02 Score=24.82 Aligned_cols=83 Identities=14% Similarity=0.134 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHh
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~ 300 (334)
.+++.+++-++.+.+.|+..|.|.| .+ |.-.+..+.+|++.+.+.+| + ..+.++.=|=..+-- -..|..+.
T Consensus 134 ~~~~~~~~~~~~~~~~g~~~i~l~D-t~---G~~~P~~v~~lv~~~~~~~~--~-~~l~~H~Hnd~Gla~-An~laA~~- 204 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGADIIYLAD-TV---GIMTPEDVAELVRALREALP--D-IPLGFHAHNDLGLAV-ANALAALE- 204 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEEE-TT---S-S-HHHHHHHHHHHHHHST--T-SEEEEEEBBTTS-HH-HHHHHHHH-
T ss_pred ccHHHHHHHHHHHHHcCCeEEEeeC-cc---CCcCHHHHHHHHHHHHHhcc--C-CeEEEEecCCccchh-HHHHHHHH-
Confidence 4789999999999889999998865 22 33234567899999988776 3 455554222111110 01133333
Q ss_pred CCCCCCeEEEccCC
Q 019874 301 HPCVYSFLHVPVQS 314 (334)
Q Consensus 301 ~~~g~~~l~igiQS 314 (334)
+|+.+++..+-.
T Consensus 205 --aGa~~id~t~~G 216 (237)
T PF00682_consen 205 --AGADRIDGTLGG 216 (237)
T ss_dssp --TT-SEEEEBGGG
T ss_pred --cCCCEEEccCcc
Confidence 589999887643
No 252
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=33.96 E-value=1.1e+02 Score=27.00 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=43.4
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeee--C---CCCCCcEEEEeecccccch---HHHHHHHHHHHhcCCCCEEE
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT--D---NSEEADIWLINTCTVKSPS---QSAMDTLIAKCKSAKKPLVV 130 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~--~---~~~~ADlviiNTCtv~~~a---~~~~~~~i~~~k~~~~~VVv 130 (334)
+++.|+-+|+. +...++..|+..|+++. + +.+++|.++|........+ -+...+.++++.+.+++| +
T Consensus 1 ~~~~v~~~~~~----~~~~~~~~l~~~G~~~~~~~~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~Pi-l 75 (200)
T PRK13143 1 MMIVIIDYGVG----NLRSVSKALERAGAEVVITSDPEEILDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGKPF-L 75 (200)
T ss_pred CeEEEEECCCc----cHHHHHHHHHHCCCeEEEECCHHHHccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCE-E
Confidence 46888888843 34678899999998764 2 2346899999653221111 123455566666666544 4
Q ss_pred Ecccc
Q 019874 131 AGCVP 135 (334)
Q Consensus 131 ~GC~a 135 (334)
|=|+.
T Consensus 76 gIC~G 80 (200)
T PRK13143 76 GICLG 80 (200)
T ss_pred EECHH
Confidence 44653
No 253
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=33.83 E-value=1.4e+02 Score=27.81 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=47.5
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeee--CC----------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DN----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~--~~----------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~ 125 (334)
-++++|. |+.....=.+.+...|...|.... ++ ..+-|++|+-| +.... +.+..+++.++++|
T Consensus 140 A~~I~i~--G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS--~sG~t-~~~~~~~~~ak~~g 214 (292)
T PRK11337 140 ARQRDLY--GAGGSAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLVVS--HSGRT-SDVIEAVELAKKNG 214 (292)
T ss_pred CCeEEEE--EecHHHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEEEe--CCCCC-HHHHHHHHHHHHCC
Confidence 3566664 555667777777788887787553 11 34568877744 33333 34777888999999
Q ss_pred CCEE-EEccccC
Q 019874 126 KPLV-VAGCVPQ 136 (334)
Q Consensus 126 ~~VV-v~GC~a~ 136 (334)
.+|| +|+....
T Consensus 215 ~~ii~IT~~~~s 226 (292)
T PRK11337 215 AKIICITNSYHS 226 (292)
T ss_pred CeEEEEeCCCCC
Confidence 8765 6665443
No 254
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=33.52 E-value=94 Score=28.96 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhCCCeee----CC---------CCCCc--EEEEeecccccc---hHHHHHHHHHHHhcC-CCCEEEEcc
Q 019874 73 SDSEYMAGQLSAFGYALT----DN---------SEEAD--IWLINTCTVKSP---SQSAMDTLIAKCKSA-KKPLVVAGC 133 (334)
Q Consensus 73 ~Dse~m~~~L~~~G~~~~----~~---------~~~AD--lviiNTCtv~~~---a~~~~~~~i~~~k~~-~~~VVv~GC 133 (334)
.+++.+...+.+.|...+ +. .+.+| ++++++..+|.. -.....+.++++|+. +.+|+|||=
T Consensus 127 ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfG 206 (256)
T TIGR00262 127 EESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFG 206 (256)
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCC
Confidence 356677777788886543 11 12456 444455566643 123466677777764 567888763
Q ss_pred ccC--CChhhhccCcc-EEEcCC
Q 019874 134 VPQ--GSRDLKELEGV-SIVGVQ 153 (334)
Q Consensus 134 ~a~--~~~~~~~~~~d-~vvG~~ 153 (334)
..+ .........+| +|+|..
T Consensus 207 I~~~e~~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 207 ISKPEQVKQAIDAGADGVIVGSA 229 (256)
T ss_pred CCCHHHHHHHHHcCCCEEEECHH
Confidence 321 11122233478 688853
No 255
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=32.45 E-value=3.3e+02 Score=26.46 Aligned_cols=83 Identities=14% Similarity=0.070 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHh
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~ 300 (334)
.+++.+++.++.+.+.|+..|.|.|. +|.-.+..+.++++.+.+.++ ....+.++.=|=..+.- ...+..+
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT----~G~~~P~~v~~~v~~l~~~l~--~~i~ig~H~HnnlGla~-ANslaAi-- 211 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDS----AGALLPEDVRDRVRALRAALK--PDTQVGFHGHNNLGLGV-ANSLAAV-- 211 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCC----CCCCCHHHHHHHHHHHHHhcC--CCCeEEEEeCCCcchHH-HHHHHHH--
Confidence 48899999999999999999988652 344344568888888877653 23345554221111110 0113333
Q ss_pred CCCCCCeEEEccC
Q 019874 301 HPCVYSFLHVPVQ 313 (334)
Q Consensus 301 ~~~g~~~l~igiQ 313 (334)
.+|+.+++-.+-
T Consensus 212 -~aGa~~iD~Sl~ 223 (337)
T PRK08195 212 -EAGATRIDGSLA 223 (337)
T ss_pred -HhCCCEEEecCh
Confidence 257888876554
No 256
>PF00296 Bac_luciferase: Luciferase-like monooxygenase; InterPro: IPR011251 Bacterial luciferase is a flavin monooxygenase that catalyses the oxidation of long-chain aldehydes and releases energy in the form of visible light, and which uses flavin as a substrate rather than a cofactor []. Bacterial luciferase is an alpha/beta (LuxA/LuxB) heterodimer, where each individual subunit folds into a single TIM (beta/alpha)8-barrel domain. There are structural similarities between bacterial luciferase and nonfluorescent flavoproteins (LuxF, FP390), alkanesulphonate monooxygenase (SsuD), and coenzyme F420-dependent terahydromethanopterin reductase, which make up clearly related families with somewhat different folds [, , ]. More information about these proteins can be found at Protein of the Month: Luciferase [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0055114 oxidation-reduction process; PDB: 2I7G_B 1NFP_A 1TVL_A 1YW1_A 1M41_B 1NQK_A 2B81_A 3RAO_A 1LUC_B 3FGC_B ....
Probab=32.42 E-value=3.2e+02 Score=25.30 Aligned_cols=91 Identities=20% Similarity=0.315 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeec-------CCCChhhhHHH
Q 019874 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLKE 294 (334)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~-------~p~~i~~~l~~ 294 (334)
+++++++.++..-+.|+..+|+....++.|+.. .+=.-++-.+.... ++|+++.. +|..+-+.+-.
T Consensus 21 ~~~~~~~~a~~ae~~Gfd~~w~~eh~~~~~~~~--~~p~~~~a~~a~~T-----~~i~lg~~v~~~~~~~P~~~A~~~at 93 (307)
T PF00296_consen 21 PLDELVELAQLAEELGFDSVWVSEHHFTDYGSS--PDPFVLLAALAART-----KRIRLGTAVTPLPLRHPVRLAEQIAT 93 (307)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEE-SSSSTTTST--S-HHHHHHHHHHT------SSSEEEEEEEECSSS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCccccc--hhHHHHHHHHhhcc-----CccceeeeeecccccchHHHHHHHHH
Confidence 589999999988889999999977666655532 12234555665532 35565532 23333343333
Q ss_pred HHHHHhCCCCCCeEEEccCCcCHHHH-HHhC
Q 019874 295 IAEVLRHPCVYSFLHVPVQSGSDAVL-SVSQ 324 (334)
Q Consensus 295 l~~l~~~~~g~~~l~igiQSgsd~vL-k~M~ 324 (334)
|+.|.. ..+.+|+=+|+...- ..++
T Consensus 94 ld~ls~-----GR~~lgig~G~~~~~~~~~G 119 (307)
T PF00296_consen 94 LDQLSG-----GRFILGIGRGSSPDEFRAFG 119 (307)
T ss_dssp HHHHTT-----S-EEEEEESTSHHHHHHHCT
T ss_pred hhhcCC-----CCceeEeeccCChhhhhhhh
Confidence 444432 368888888887776 4443
No 257
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=32.39 E-value=1.7e+02 Score=20.17 Aligned_cols=44 Identities=9% Similarity=0.237 Sum_probs=33.1
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCC--CCcEEEEeecc
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE--EADIWLINTCT 105 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~--~ADlviiNTCt 105 (334)
.++++. | ..+..+-+.+...+...|-.++.... .+..+|+.+-.
T Consensus 6 ~~~~~~--g-~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~ 51 (80)
T smart00292 6 KVFVIT--G-KFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPE 51 (80)
T ss_pred eEEEEe--C-CCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCC
Confidence 345553 5 67888889999999999999987766 67777775543
No 258
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.22 E-value=2.4e+02 Score=25.76 Aligned_cols=86 Identities=7% Similarity=-0.006 Sum_probs=54.2
Q ss_pred HHHHHHH-CCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCe
Q 019874 229 RVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307 (334)
Q Consensus 229 Ei~~l~~-~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~ 307 (334)
-++.+.+ .|+++++++|-|-..-|. ..-.+++++|.+.. + ..+.++- -...+ +++..+.. .|+..
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~~---~~n~~~I~~i~~~~---~-~pi~vGG-GIrs~----e~v~~~l~--~Ga~k 101 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQH---AREFDYIKSLRRLT---T-KDIEVGG-GIRTK----SQIMDYFA--AGINY 101 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccCC---cchHHHHHHHHhhc---C-CeEEEcC-CcCCH----HHHHHHHH--CCCCE
Confidence 4455556 599999999887553333 23458888887643 2 1343321 11111 33455554 48899
Q ss_pred EEEccCCc-CHHHHHHhCCCCC
Q 019874 308 LHVPVQSG-SDAVLSVSQKIVP 328 (334)
Q Consensus 308 l~igiQSg-sd~vLk~M~R~~t 328 (334)
+-+|-... +++.++.+-..|.
T Consensus 102 vvigt~a~~~~~~l~~~~~~fg 123 (234)
T PRK13587 102 CIVGTKGIQDTDWLKEMAHTFP 123 (234)
T ss_pred EEECchHhcCHHHHHHHHHHcC
Confidence 99999987 6778888877663
No 259
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=31.69 E-value=1.3e+02 Score=28.16 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=46.0
Q ss_pred CChhHHHHHHHHHHhCCCeeeCC--------------------CCCCcEEEEe--ecccccchHHHHHHHHHHHhcCCCC
Q 019874 70 HNQSDSEYMAGQLSAFGYALTDN--------------------SEEADIWLIN--TCTVKSPSQSAMDTLIAKCKSAKKP 127 (334)
Q Consensus 70 ~N~~Dse~m~~~L~~~G~~~~~~--------------------~~~ADlviiN--TCtv~~~a~~~~~~~i~~~k~~~~~ 127 (334)
.|..|-+.+...|+.-|..-.-+ ..++|++++. +=+|-..++..+++++.+++++|+.
T Consensus 112 ~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~t 191 (254)
T COG1121 112 LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKT 191 (254)
T ss_pred ccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 37789999999999988643211 4689999996 3345445678899999999988876
Q ss_pred EEE
Q 019874 128 LVV 130 (334)
Q Consensus 128 VVv 130 (334)
|++
T Consensus 192 Il~ 194 (254)
T COG1121 192 VLM 194 (254)
T ss_pred EEE
Confidence 665
No 260
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=31.65 E-value=3e+02 Score=22.81 Aligned_cols=66 Identities=12% Similarity=0.265 Sum_probs=38.1
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeeccccc--------chHHHHHHHHHHHhcCCCCEEEE
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS--------PSQSAMDTLIAKCKSAKKPLVVA 131 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~--------~a~~~~~~~i~~~k~~~~~VVv~ 131 (334)
.+.++..|+.=.... .+...|... +. ...+|+|+|.- +.-. ...+.+.++++++++.+.+||+.
T Consensus 36 ~~~v~n~g~~G~~~~--~~~~~l~~~----~~-~~~pd~v~i~~-G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 36 DVTVINAGVSGDTTA--GGLARLPAL----LA-QHKPDLVILEL-GGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred CeEEEecCcCCcccH--HHHHHHHHH----HH-hcCCCEEEEec-cCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 467788887755443 233334321 11 13679998843 3211 12345667778888888888877
Q ss_pred cc
Q 019874 132 GC 133 (334)
Q Consensus 132 GC 133 (334)
+.
T Consensus 108 ~~ 109 (177)
T cd01822 108 GM 109 (177)
T ss_pred ec
Confidence 64
No 261
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=31.36 E-value=2.3e+02 Score=22.35 Aligned_cols=66 Identities=9% Similarity=0.099 Sum_probs=41.0
Q ss_pred eeCCCCChhHHHHHHHHHHhCC-Ceee-----------CCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EE
Q 019874 65 TFGCSHNQSDSEYMAGQLSAFG-YALT-----------DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VA 131 (334)
Q Consensus 65 t~GC~~N~~Dse~m~~~L~~~G-~~~~-----------~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v~ 131 (334)
-+||-.+..=...+...|...| .... ....+-|++|+-|-+ ... +...+.++.++++|.+|| ++
T Consensus 4 i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~s--G~t-~e~~~~~~~a~~~g~~vi~iT 80 (126)
T cd05008 4 IVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQS--GET-ADTLAALRLAKEKGAKTVAIT 80 (126)
T ss_pred EEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCC--cCC-HHHHHHHHHHHHcCCeEEEEE
Confidence 3466666666667777777665 2221 112456887775543 333 357788899999998766 56
Q ss_pred cc
Q 019874 132 GC 133 (334)
Q Consensus 132 GC 133 (334)
+-
T Consensus 81 ~~ 82 (126)
T cd05008 81 NV 82 (126)
T ss_pred CC
Confidence 54
No 262
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=31.31 E-value=2.7e+02 Score=25.64 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=37.3
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~ 131 (334)
....+...|..+...+-+.+...+.+ ...++|+++++.........+.+..+++.+++.+++|++-
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~D 163 (304)
T TIGR03828 98 TETKLNGPGPEISEEELEALLEKLRA-------QLAEGDWLVLSGSLPPGVPPDFYAELIALAREKGAKVILD 163 (304)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH-------hccCCCEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 34445556665544444444333321 2367899999765432222344666777777778777654
No 263
>PLN02932 3-ketoacyl-CoA synthase
Probab=30.50 E-value=64 Score=33.08 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=33.5
Q ss_pred HHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcC-CCC-EEE--EccccCCCh
Q 019874 80 GQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-KKP-LVV--AGCVPQGSR 139 (334)
Q Consensus 80 ~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~-~~~-VVv--~GC~a~~~~ 139 (334)
..|++.|. ++++-|++|+||||.. +.-.-+-.+++++.-+ +.+ .=+ .||.+-...
T Consensus 158 ~aL~~agi----~p~dId~lIv~tst~~-~~Pslaa~V~~~lGlr~~i~~fdL~gmGCSggl~a 216 (478)
T PLN02932 158 NLFRNTGI----SPSDIGILVVNSSTFN-PTPSLSSILVNKFKLRDNIKSLNLGGMGCSAGVIA 216 (478)
T ss_pred HHHHHcCC----CHHHCCEEEEEccCCC-CCCcHHHHHHHHhCCCCCceEEEeccchhhhHHHH
Confidence 44566664 3567899999999974 3222233456676543 432 334 389887654
No 264
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=30.10 E-value=58 Score=24.88 Aligned_cols=38 Identities=32% Similarity=0.666 Sum_probs=29.0
Q ss_pred ccCCCCCCCcccccc-c--cCCc-cccCCHHHHHHHHHHHHH
Q 019874 198 INVGCLGACTYCKTK-H--ARGH-LGSYTVESLVGRVRTVIA 235 (334)
Q Consensus 198 isrGC~~~CsfC~ip-~--~rG~-~rsr~~e~Iv~Ei~~l~~ 235 (334)
+-.||-..|.=|... + ..|+ ..-.++|++++.|...++
T Consensus 32 ie~gCl~~Cg~C~~~pFAlVnG~~V~A~t~eeL~~kI~~~i~ 73 (78)
T PF07293_consen 32 IEYGCLSYCGPCAKKPFALVNGEIVAAETAEELLEKIKEKIE 73 (78)
T ss_pred EEcChhhhCcCCCCCccEEECCEEEecCCHHHHHHHHHHHHh
Confidence 457999999999875 3 3677 455788999988887664
No 265
>PRK06756 flavodoxin; Provisional
Probab=30.08 E-value=2.9e+02 Score=22.76 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCeee-----CC-----CCCCcEEEEeecccc-cchHHHHHHHHHHHhc---CCCCEEEEccccCC
Q 019874 75 SEYMAGQLSAFGYALT-----DN-----SEEADIWLINTCTVK-SPSQSAMDTLIAKCKS---AKKPLVVAGCVPQG 137 (334)
Q Consensus 75 se~m~~~L~~~G~~~~-----~~-----~~~ADlviiNTCtv~-~~a~~~~~~~i~~~k~---~~~~VVv~GC~a~~ 137 (334)
.+.|+..|.+.|.++. +. ..++|.|++-|.|.- ......+...++.+.. +|+++.+=|...+.
T Consensus 19 A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt~~~~ 95 (148)
T PRK06756 19 ADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGSCDSA 95 (148)
T ss_pred HHHHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCCc
Confidence 3556666776776532 11 246799999876652 2222235556655532 46666666654443
No 266
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.64 E-value=2.2e+02 Score=20.62 Aligned_cols=33 Identities=9% Similarity=0.212 Sum_probs=22.6
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE
Q 019874 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV 129 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV 129 (334)
.+-|++++-|.+=.. +...+.+++++++|.++|
T Consensus 46 ~~~d~~i~iS~sg~t---~~~~~~~~~a~~~g~~ii 78 (87)
T cd04795 46 RKGDVVIALSYSGRT---EELLAALEIAKELGIPVI 78 (87)
T ss_pred CCCCEEEEEECCCCC---HHHHHHHHHHHHcCCeEE
Confidence 456888776655222 346778889998888765
No 267
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=29.21 E-value=1.4e+02 Score=25.89 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=16.7
Q ss_pred EEEEeeCCCCChhHHHHHHHHHHhCCCee
Q 019874 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYAL 89 (334)
Q Consensus 61 ~~i~t~GC~~N~~Dse~m~~~L~~~G~~~ 89 (334)
+.|.-||++.| +...|++.|+..
T Consensus 1 i~i~d~g~~~~------~~~~l~~~G~~~ 23 (178)
T cd01744 1 VVVIDFGVKHN------ILRELLKRGCEV 23 (178)
T ss_pred CEEEecCcHHH------HHHHHHHCCCeE
Confidence 46788998865 466777778754
No 268
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=29.09 E-value=2e+02 Score=25.69 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=30.3
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCC--ee--eCC---CCCCcEEEEee
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGY--AL--TDN---SEEADIWLINT 103 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~--~~--~~~---~~~ADlviiNT 103 (334)
|+++.|+-|||. +-..+...|++.|+ ++ +.+ .+++|.+||--
T Consensus 1 ~~~~~iid~g~g----n~~s~~~al~~~g~~~~v~~~~~~~~l~~~d~lIlpG 49 (209)
T PRK13146 1 MMTVAIIDYGSG----NLRSAAKALERAGAGADVVVTADPDAVAAADRVVLPG 49 (209)
T ss_pred CCeEEEEECCCC----hHHHHHHHHHHcCCCccEEEECCHHHhcCCCEEEECC
Confidence 568999999975 33556788888898 33 333 35789999954
No 269
>PRK05569 flavodoxin; Provisional
Probab=28.58 E-value=1.3e+02 Score=24.50 Aligned_cols=43 Identities=19% Similarity=0.188 Sum_probs=26.2
Q ss_pred CCCcEEEEeecccccc-h-HHHHHHHHHHHhc---CCCCEEEEccccC
Q 019874 94 EEADIWLINTCTVKSP-S-QSAMDTLIAKCKS---AKKPLVVAGCVPQ 136 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~-a-~~~~~~~i~~~k~---~~~~VVv~GC~a~ 136 (334)
.++|.+++-|.+.-.. . ...+...+++++. +|+++++-|.+..
T Consensus 47 ~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~ 94 (141)
T PRK05569 47 LEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGSYGW 94 (141)
T ss_pred hhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeCCCC
Confidence 4789999988775332 1 1245556665542 4677777676554
No 270
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=28.54 E-value=5.2e+02 Score=24.57 Aligned_cols=90 Identities=16% Similarity=0.254 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeec-------CCCChhhhHH
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLK 293 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~-------~p~~i~~~l~ 293 (334)
.+++++++.++..-+.|+..+|+.. ..+. . +-.-++-.+.... .+|++++. ||..+-+..-
T Consensus 11 ~~~~~~~~~a~~AE~~Gfd~vw~~e-h~~~--~----~~~~~la~~aa~T-----~rI~lgt~v~~~~~r~P~~~A~~~a 78 (325)
T PRK02271 11 HPVKKIAYLAKLAEDNGFDYAWITD-HYNN--R----DVYMTLAAIAAAT-----DTIKLGPGVTNPYTRHPAITASAIA 78 (325)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc-ccCC--C----CHHHHHHHHHHhc-----CeEEEEeeeccCCCCCHHHHHHHHH
Confidence 3688899888887778999998754 4321 1 2345666666532 47777652 2333333333
Q ss_pred HHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCC
Q 019874 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIV 327 (334)
Q Consensus 294 ~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~ 327 (334)
.|+.+.. .++.+|+=+|+......++..+
T Consensus 79 tLd~ls~-----GR~~lG~G~G~~~~~~~~G~~~ 107 (325)
T PRK02271 79 TLDEISG-----GRAVLGIGPGDKATLDALGIEW 107 (325)
T ss_pred HHHHHcC-----CCEEEEecCCCHHHHHHcCCCc
Confidence 3333321 3588999999887777776544
No 271
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=28.50 E-value=62 Score=25.36 Aligned_cols=38 Identities=16% Similarity=0.385 Sum_probs=24.2
Q ss_pred CCCCChhHH----HHHHHHHHhCCCeee---------------CCCCCCcEEEEeec
Q 019874 67 GCSHNQSDS----EYMAGQLSAFGYALT---------------DNSEEADIWLINTC 104 (334)
Q Consensus 67 GC~~N~~Ds----e~m~~~L~~~G~~~~---------------~~~~~ADlviiNTC 104 (334)
.|+--.+-| +.+...+++.||++. ++..+||+|++-+-
T Consensus 6 ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~ 62 (96)
T cd05569 6 ACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAAD 62 (96)
T ss_pred ECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecC
Confidence 455555555 445566667898765 44567888877443
No 272
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=28.40 E-value=3.5e+02 Score=26.24 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=47.6
Q ss_pred eeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCC----C---CCCCCCHHHHHH
Q 019874 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY----G---RDIGVNLPILLN 264 (334)
Q Consensus 192 ~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~y----g---~d~~~~l~~Ll~ 264 (334)
++..|-+..| ....=-++..-|-+| .|++.+++|++.+++.|++-|.|+|.-...+ | .+...-+..-++
T Consensus 33 LI~PiFV~eg---~~~~~~I~SMPgv~r-~s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqravr 108 (330)
T COG0113 33 LIYPIFVVEG---ENIKEEIPSMPGVYR-YSLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRAVR 108 (330)
T ss_pred eeEeEEEecC---CCCccccCCCCCcee-ccHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCChHHHHHH
Confidence 3445556666 333334556656554 5799999999999999999999988432211 1 111112456677
Q ss_pred HHHHhCC
Q 019874 265 AIVAELP 271 (334)
Q Consensus 265 ~l~~~i~ 271 (334)
.|.+.+|
T Consensus 109 ~ik~~~p 115 (330)
T COG0113 109 AIKEAFP 115 (330)
T ss_pred HHHHhCC
Confidence 7766565
No 273
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=28.19 E-value=1.3e+02 Score=28.32 Aligned_cols=79 Identities=19% Similarity=0.354 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHhCCCeeeC----C---------CCCCc--EEEEeecccccch---HHHHHHHHHHHhcC-CCCEEEEcc
Q 019874 73 SDSEYMAGQLSAFGYALTD----N---------SEEAD--IWLINTCTVKSPS---QSAMDTLIAKCKSA-KKPLVVAGC 133 (334)
Q Consensus 73 ~Dse~m~~~L~~~G~~~~~----~---------~~~AD--lviiNTCtv~~~a---~~~~~~~i~~~k~~-~~~VVv~GC 133 (334)
.+++.+...+.++|...+. . .+.|+ ++++..-++|... ...+.+.++++|+. +.+|+||+=
T Consensus 131 ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFG 210 (263)
T CHL00200 131 EESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFG 210 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECC
Confidence 4566667777777765531 1 12455 3444444566531 24566666677654 568888643
Q ss_pred ccCCChh-hh---ccCcc-EEEcCC
Q 019874 134 VPQGSRD-LK---ELEGV-SIVGVQ 153 (334)
Q Consensus 134 ~a~~~~~-~~---~~~~d-~vvG~~ 153 (334)
.. .++ .+ ...+| +|+|..
T Consensus 211 I~--~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 211 IS--TSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred cC--CHHHHHHHHhcCCCEEEECHH
Confidence 22 233 22 23378 788853
No 274
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=28.13 E-value=30 Score=34.95 Aligned_cols=15 Identities=20% Similarity=0.742 Sum_probs=12.3
Q ss_pred cCCCCCCCccccccc
Q 019874 199 NVGCLGACTYCKTKH 213 (334)
Q Consensus 199 srGC~~~CsfC~ip~ 213 (334)
-+-|.|+|.||-+-.
T Consensus 81 ~~~C~N~C~FCFidQ 95 (433)
T TIGR03279 81 LIQCNNRCPFCFIDQ 95 (433)
T ss_pred ccccCCcCceEeccC
Confidence 466999999998863
No 275
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=27.83 E-value=2.6e+02 Score=27.24 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=35.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCC--------CCCHHHHHHHHHHhCC
Q 019874 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELP 271 (334)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~--------~~~l~~Ll~~l~~~i~ 271 (334)
...+++.+++|++.+++.|++.|.|+|.. .. +|. ..-+..-++.|.+.+|
T Consensus 54 ~r~s~d~l~~~v~~~~~~Gi~av~LFgv~--~~-Kd~~gs~A~~~~g~v~rair~iK~~~p 111 (323)
T PRK09283 54 YRLSIDLLVKEAEEAVELGIPAVALFGVP--EL-KDEDGSEAYNPDGLVQRAIRAIKKAFP 111 (323)
T ss_pred eeeCHHHHHHHHHHHHHCCCCEEEEeCcC--CC-CCcccccccCCCCHHHHHHHHHHHhCC
Confidence 44689999999999999999999998862 11 111 1124566777776665
No 276
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=27.62 E-value=5e+02 Score=24.13 Aligned_cols=83 Identities=11% Similarity=0.156 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhH-HHHHHHH
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL-KEIAEVL 299 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l-~~l~~l~ 299 (334)
.+++.+++-++.+.+.|+..|.|.| . +|.-.+..+.++++.+.+.++ ....+-++. |=+ +.--+ ..++.+
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~D-T---~G~~~P~~v~~lv~~l~~~~~--~~~~i~~H~-Hn~-~Gla~AN~laA~- 205 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVD-S---FGSMYPEDIKRIISLLRSNLD--KDIKLGFHA-HNN-LQLALANTLEAI- 205 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEec-C---CCCCCHHHHHHHHHHHHHhcC--CCceEEEEe-CCC-ccHHHHHHHHHH-
Confidence 5889999999999889999998854 2 344445678888988876553 213444432 211 11111 113333
Q ss_pred hCCCCCCeEEEccCC
Q 019874 300 RHPCVYSFLHVPVQS 314 (334)
Q Consensus 300 ~~~~g~~~l~igiQS 314 (334)
.+|+.+++-.+--
T Consensus 206 --~aGa~~vd~s~~G 218 (266)
T cd07944 206 --ELGVEIIDATVYG 218 (266)
T ss_pred --HcCCCEEEEeccc
Confidence 3588888877653
No 277
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=27.53 E-value=1.7e+02 Score=25.51 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCCeeeC-----------------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEcc
Q 019874 75 SEYMAGQLSAFGYALTD-----------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (334)
Q Consensus 75 se~m~~~L~~~G~~~~~-----------------~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC 133 (334)
...+...|...||+.+- .....|.++|-| . +..+..++.+++++|+.|++-|.
T Consensus 68 ~~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvS----g--D~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 68 SDKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVT----R--DADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred cHHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEe----c--cHhHHHHHHHHHHCCCEEEEEeC
Confidence 44677888889998641 124567777743 2 33567788899999998888784
No 278
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=27.23 E-value=1.5e+02 Score=23.81 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=24.8
Q ss_pred CCCcEEEEeeccccc-chH-HHHHHHHHHHhc---CCCCEEEEccccCC
Q 019874 94 EEADIWLINTCTVKS-PSQ-SAMDTLIAKCKS---AKKPLVVAGCVPQG 137 (334)
Q Consensus 94 ~~ADlviiNTCtv~~-~a~-~~~~~~i~~~k~---~~~~VVv~GC~a~~ 137 (334)
.++|.|++-|.|.-. ... ..+...++++.. +|+++++-|...+.
T Consensus 44 ~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~vfgt~g~~ 92 (140)
T TIGR01753 44 LSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVALFGSGDWG 92 (140)
T ss_pred hcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEEEecCCCC
Confidence 468999998887432 121 344455555442 46666666655443
No 279
>PRK04296 thymidine kinase; Provisional
Probab=27.06 E-value=2e+02 Score=25.13 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=31.1
Q ss_pred CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccC
Q 019874 93 SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (334)
Q Consensus 93 ~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~ 136 (334)
..+.|+|+|...-+-. ++.+.++++.++..|..||++|=..+
T Consensus 76 ~~~~dvviIDEaq~l~--~~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLD--KEQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCC--HHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 3568999998876532 23467788888889999999986543
No 280
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.01 E-value=4.8e+02 Score=24.89 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=20.9
Q ss_pred CCceEEEEee-CCCCChhHHHHHHHHHHhCCCeee
Q 019874 57 GTETIYMKTF-GCSHNQSDSEYMAGQLSAFGYALT 90 (334)
Q Consensus 57 ~~~~~~i~t~-GC~~N~~Dse~m~~~L~~~G~~~~ 90 (334)
.+++|.|+.- +.+....-.+.+...|.+.|+++.
T Consensus 4 ~~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~ 38 (296)
T PRK04539 4 PFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVY 38 (296)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 3566776644 444444445667777888887654
No 281
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=26.98 E-value=2.5e+02 Score=27.24 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHh
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~ 300 (334)
.+++.+++.++.+.+.|+..|.|.|. +|.-.+..+.+++..+.+.++ ....+.++.=|=..+.- ...+..+
T Consensus 140 ~~~e~l~~~a~~~~~~Ga~~i~i~DT----~G~~~P~~v~~~v~~l~~~l~--~~i~ig~H~HnnlGla~-ANslaAi-- 210 (333)
T TIGR03217 140 TPPEKLAEQAKLMESYGADCVYIVDS----AGAMLPDDVRDRVRALKAVLK--PETQVGFHAHHNLSLAV-ANSIAAI-- 210 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEccC----CCCCCHHHHHHHHHHHHHhCC--CCceEEEEeCCCCchHH-HHHHHHH--
Confidence 57899999999988899999988652 344334567888888876553 12344443211111110 0112332
Q ss_pred CCCCCCeEEEccC
Q 019874 301 HPCVYSFLHVPVQ 313 (334)
Q Consensus 301 ~~~g~~~l~igiQ 313 (334)
.+|+.+++-.+-
T Consensus 211 -~aGa~~iD~Sl~ 222 (333)
T TIGR03217 211 -EAGATRIDASLR 222 (333)
T ss_pred -HhCCCEEEeecc
Confidence 357888876654
No 282
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=26.97 E-value=2e+02 Score=25.83 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=27.9
Q ss_pred EEEEeeCCCCChhHHHHHHHHHHhCCCeee-----CCCCCCcEEEE
Q 019874 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT-----DNSEEADIWLI 101 (334)
Q Consensus 61 ~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~-----~~~~~ADlvii 101 (334)
+.|+.|||. |... +...|+..|++.. ++.+++|.+|+
T Consensus 2 i~iidyg~g-Nl~s---~~~al~~~~~~~~~~~~~~~l~~~d~iIl 43 (210)
T PRK14004 2 IAILDYGMG-NIHS---CLKAVSLYTKDFVFTSDPETIENSKALIL 43 (210)
T ss_pred EEEEECCCc-hHHH---HHHHHHHcCCeEEEECCHHHhccCCEEEE
Confidence 789999999 7644 6677888888765 23468899876
No 283
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.91 E-value=3e+02 Score=26.61 Aligned_cols=96 Identities=8% Similarity=0.003 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEe-eccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHh
Q 019874 222 TVESLVGRVRTVIADGVKEVWLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (334)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~kei~l~-~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~ 300 (334)
++++.+++++.+.+.|++.+-+- |. .+. ..-.+.++++.+.++ ....+++..-..-...+-+..+..|..
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~------~~~-~~d~~~v~air~~~g--~~~~l~vDaN~~~~~~~A~~~~~~l~~ 211 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGY------PTA-DEDLAVVRSIRQAVG--DGVGLMVDYNQSLTVPEAIERGQALDQ 211 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCC------CCh-HhHHHHHHHHHHhhC--CCCEEEEeCCCCcCHHHHHHHHHHHHc
Confidence 47888999999888898776552 21 011 122477888876653 345666643222222222222333432
Q ss_pred CCCCCCeEEEccCCcCHHHHHHhCCCCC
Q 019874 301 HPCVYSFLHVPVQSGSDAVLSVSQKIVP 328 (334)
Q Consensus 301 ~~~g~~~l~igiQSgsd~vLk~M~R~~t 328 (334)
-+..+|.=|++..+.+-++..++..+
T Consensus 212 --~~i~~iEeP~~~~d~~~~~~l~~~~~ 237 (355)
T cd03321 212 --EGLTWIEEPTLQHDYEGHARIASALR 237 (355)
T ss_pred --CCCCEEECCCCCcCHHHHHHHHHhcC
Confidence 35788999998888887777766543
No 284
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=26.87 E-value=1.7e+02 Score=30.21 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=41.4
Q ss_pred CChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEEEEccccCCChh-hhccCc
Q 019874 70 HNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQGSRD-LKELEG 146 (334)
Q Consensus 70 ~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~--~~~VVv~GC~a~~~~~-~~~~~~ 146 (334)
.+..+-|++...++ . .+|+|+|.+ + +......++.++++|+. +..|++|+|....... ..+..+
T Consensus 245 ~~~~~~~r~~~l~~-a---------g~d~i~iD~-~--~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGa 311 (505)
T PLN02274 245 TRESDKERLEHLVK-A---------GVDVVVLDS-S--QGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGV 311 (505)
T ss_pred CCccHHHHHHHHHH-c---------CCCEEEEeC-C--CCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCc
Confidence 34555666655553 3 389999976 2 22223456778888875 4678888886543332 234467
Q ss_pred cE-EEc
Q 019874 147 VS-IVG 151 (334)
Q Consensus 147 d~-vvG 151 (334)
|. ++|
T Consensus 312 D~i~vg 317 (505)
T PLN02274 312 DGLRVG 317 (505)
T ss_pred CEEEEC
Confidence 84 455
No 285
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.82 E-value=2.8e+02 Score=22.52 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=37.7
Q ss_pred EEeeCCCCChhHHHHHHHHHHhCCCeee------C-------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE
Q 019874 63 MKTFGCSHNQSDSEYMAGQLSAFGYALT------D-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV 129 (334)
Q Consensus 63 i~t~GC~~N~~Dse~m~~~L~~~G~~~~------~-------~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV 129 (334)
|..+||-.|..-....+-.|.+.++..+ + ...+-|++++-+.+ ....+.+.++++.+++.|.+++
T Consensus 16 i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~--g~t~~~~~~~~~~~~~~~~~vi 93 (153)
T cd05009 16 FYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPE--DRLEEKLESLIKEVKARGAKVI 93 (153)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEecC--ChhHHHHHHHHHHHHHcCCEEE
Confidence 3445666677777776666666553111 1 12234555554432 2333457778888888887766
Q ss_pred E
Q 019874 130 V 130 (334)
Q Consensus 130 v 130 (334)
+
T Consensus 94 ~ 94 (153)
T cd05009 94 V 94 (153)
T ss_pred E
Confidence 4
No 286
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=26.43 E-value=2.9e+02 Score=27.92 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=40.1
Q ss_pred ceEEEEeeCCCCChhHHH----HHHHHHHhCCCeeeCCCCCCcEEEEe-ecccccchHHHHHHHHHHHhcCCCCEEEEcc
Q 019874 59 ETIYMKTFGCSHNQSDSE----YMAGQLSAFGYALTDNSEEADIWLIN-TCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse----~m~~~L~~~G~~~~~~~~~ADlviiN-TCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC 133 (334)
-.+|+-|.|=--++..++ .|+..|.+. ..|.||+. ||.+=.. -.--+.+++.+.|.+||.-.|
T Consensus 305 ~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~d---------gVDAVILTstCgtC~r---~~a~m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 305 HEYFYSTVGNGTTVAESKQFAKEFVVELKQG---------GVDAVILTSTUGTCTR---CGATMVKEIERAGIPVVHMCT 372 (431)
T ss_pred cCeeEEcCCCCchHHHHHHHHHHHHHHHHHc---------CCCEEEEcCCCCcchh---HHHHHHHHHHHcCCCEEEEee
Confidence 344566666666654444 444555543 47888887 8875332 222345666678899998777
Q ss_pred ccC
Q 019874 134 VPQ 136 (334)
Q Consensus 134 ~a~ 136 (334)
+..
T Consensus 373 ~~p 375 (431)
T TIGR01918 373 VIP 375 (431)
T ss_pred ccc
Confidence 653
No 287
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=26.37 E-value=3.1e+02 Score=26.00 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=48.5
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeC------------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCC
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~------------~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~ 126 (334)
++|||...| .+..-.+.++..|...|+.... ...+-|++|+-|.+= .+ +.+.+.++.++++|.
T Consensus 48 ~~I~i~G~G--~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG--~t-~~~~~~~~~ak~~g~ 122 (326)
T PRK10892 48 GKVVVMGMG--KSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSG--ES-SEILALIPVLKRLHV 122 (326)
T ss_pred CeEEEEeCc--HhHHHHHHHHHHHhcCCceeEEeChHHhhccccccCCCCCEEEEEeCCC--CC-HHHHHHHHHHHHCCC
Confidence 467776555 7777778888888888885431 133468888866542 22 467888999999998
Q ss_pred CEE-EEccc
Q 019874 127 PLV-VAGCV 134 (334)
Q Consensus 127 ~VV-v~GC~ 134 (334)
++| +++-.
T Consensus 123 ~vi~iT~~~ 131 (326)
T PRK10892 123 PLICITGRP 131 (326)
T ss_pred cEEEEECCC
Confidence 766 55543
No 288
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=26.31 E-value=5.2e+02 Score=23.87 Aligned_cols=59 Identities=15% Similarity=-0.019 Sum_probs=38.7
Q ss_pred cccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCC------CCCCHHHHHHHHHH
Q 019874 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD------IGVNLPILLNAIVA 268 (334)
Q Consensus 208 fC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d------~~~~l~~Ll~~l~~ 268 (334)
+..+|+... |.++..++..++..+.+.|++.|.++..|....|.. ...+-.+|++.+..
T Consensus 59 ~~~i~Hlt~--r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~ 123 (274)
T cd00537 59 IEPIPHLTC--RDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRK 123 (274)
T ss_pred CCeeeeccc--CCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 445565544 344559999999999999999998885554444320 01345678887764
No 289
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=26.30 E-value=3.1e+02 Score=26.56 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=38.0
Q ss_pred cccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCC-------C-CCHHHHHHHHHHhCC
Q 019874 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-------G-VNLPILLNAIVAELP 271 (334)
Q Consensus 212 p~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~-------~-~~l~~Ll~~l~~~i~ 271 (334)
+..-|-+ ..+++.+++|++.+.+.|++.|.|+|..- . +|. . .-+..-++.|.+.+|
T Consensus 40 ~sMPG~~-r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~--~-Kd~~gs~A~~~~g~v~~air~iK~~~p 103 (314)
T cd00384 40 SSMPGVY-RLSVDSLVEEAEELADLGIRAVILFGIPE--H-KDEIGSEAYDPDGIVQRAIRAIKEAVP 103 (314)
T ss_pred CCCCCce-eeCHHHHHHHHHHHHHCCCCEEEEECCCC--C-CCCCcccccCCCChHHHHHHHHHHhCC
Confidence 3444433 46899999999999999999999998631 1 121 1 124566777776665
No 290
>KOG4306 consensus Glycosylphosphatidylinositol-specific phospholipase C [Signal transduction mechanisms]
Probab=25.64 E-value=1.6e+02 Score=28.43 Aligned_cols=51 Identities=20% Similarity=0.248 Sum_probs=36.3
Q ss_pred CCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHH
Q 019874 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267 (334)
Q Consensus 215 rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~ 267 (334)
.|-+-++++++++.||++++..--+||+|.+-..+ ||... .....|...|.
T Consensus 102 HGl~~~~~v~~vL~ev~~Fl~~h~eEVViL~f~~~-fg~~~-~~h~~l~~~ik 152 (306)
T KOG4306|consen 102 HGLFSTYPVLEVLNEVRQFLSEHPEEVVILEFRHF-FGMTE-PHHRKLVLVIK 152 (306)
T ss_pred eeccccccHHHHHHHHHHHHHhCCCEEEEEeccch-hccCc-cHHHHHHHHHH
Confidence 36677799999999999999887799999776644 66653 22334444443
No 291
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=25.35 E-value=1.9e+02 Score=29.04 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=32.8
Q ss_pred CCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEEEEccccCCChh-hhccCccE-EEcC
Q 019874 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQGSRD-LKELEGVS-IVGV 152 (334)
Q Consensus 95 ~ADlviiNTCtv~~~a~~~~~~~i~~~k~~--~~~VVv~GC~a~~~~~-~~~~~~d~-vvG~ 152 (334)
.+|+|+|.+= +..-....+.+++++++ +..|++|+|....... .....+|. .+|.
T Consensus 165 GvDvI~iD~a---~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 165 HVDILVIDSA---HGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGI 223 (404)
T ss_pred CCCEEEEECC---CCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECC
Confidence 3899998652 22224566778888775 4567788876533332 23446774 4563
No 292
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=25.17 E-value=1.8e+02 Score=28.32 Aligned_cols=58 Identities=22% Similarity=0.290 Sum_probs=36.5
Q ss_pred ccCCccccCCHHHHHHHHHHHHHCCCcEEEEeec--c-----CCCCCCCCCCCHHHHHHHHHHhCC
Q 019874 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSE--D-----TGAYGRDIGVNLPILLNAIVAELP 271 (334)
Q Consensus 213 ~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~--d-----~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (334)
..-|- ...+++.+++|++.+.+.|++.|.|+|. . .++...+...-+..-++.|.+.+|
T Consensus 47 smPg~-~r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~p 111 (324)
T PF00490_consen 47 SMPGV-YRYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFP 111 (324)
T ss_dssp TSTTE-EEEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHST
T ss_pred CCCCe-eeeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCC
Confidence 34343 3468999999999999999999999886 1 111111111225567777877776
No 293
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=25.02 E-value=1.9e+02 Score=25.29 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=39.0
Q ss_pred EEEEeeCCCCChhHHHHHHHHHHhCCCeee--CC---CCCCcEEEEeecccccchH-----HHHHHHHHHHhcCCCCEEE
Q 019874 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DN---SEEADIWLINTCTVKSPSQ-----SAMDTLIAKCKSAKKPLVV 130 (334)
Q Consensus 61 ~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~--~~---~~~ADlviiNTCtv~~~a~-----~~~~~~i~~~k~~~~~VVv 130 (334)
|.|+.+|++-. -.++..|+..|+++. +. .+++|.|+|........+. ....+.++++.+.+++ |+
T Consensus 1 i~i~d~g~~~~----~~~~~~l~~~g~~v~v~~~~~~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~p-il 75 (198)
T cd01748 1 IAIIDYGMGNL----RSVANALERLGAEVIITSDPEEILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKP-FL 75 (198)
T ss_pred CEEEeCCCChH----HHHHHHHHHCCCeEEEEcChHHhccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCc-EE
Confidence 35677776543 346778888887653 22 3568999994432221110 1234556666556654 44
Q ss_pred Ecccc
Q 019874 131 AGCVP 135 (334)
Q Consensus 131 ~GC~a 135 (334)
|=|+.
T Consensus 76 GiC~G 80 (198)
T cd01748 76 GICLG 80 (198)
T ss_pred EECHH
Confidence 44643
No 294
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=24.96 E-value=98 Score=25.66 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=20.9
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EEc
Q 019874 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAG 132 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v~G 132 (334)
.+-|++|+-|.+=+++ -..+.++.+|++|.+|| ++|
T Consensus 102 ~~gDvli~iS~SG~s~---~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSP---NVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -TT-EEEEEESSS-SH---HHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCEEEEECCCCCCH---HHHHHHHHHHHCCCEEEEEeC
Confidence 4558887777664443 35667778888887655 544
No 295
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=24.86 E-value=3.5e+02 Score=24.25 Aligned_cols=85 Identities=14% Similarity=0.238 Sum_probs=48.9
Q ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHH
Q 019874 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297 (334)
Q Consensus 218 ~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~ 297 (334)
+|..++++.++-++.|.+.|++-+.+|=.+ ....+.++.+.++.| + -.+..++. ++.+ ++..
T Consensus 14 ir~~~~~~a~~~~~al~~gGi~~iEiT~~t---------~~a~~~I~~l~~~~p--~-~~vGAGTV----~~~e--~a~~ 75 (196)
T PF01081_consen 14 IRGDDPEDAVPIAEALIEGGIRAIEITLRT---------PNALEAIEALRKEFP--D-LLVGAGTV----LTAE--QAEA 75 (196)
T ss_dssp ETTSSGGGHHHHHHHHHHTT--EEEEETTS---------TTHHHHHHHHHHHHT--T-SEEEEES------SHH--HHHH
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEecCC---------ccHHHHHHHHHHHCC--C-CeeEEEec----cCHH--HHHH
Confidence 466788999999999999999988875322 245688888877665 3 34554442 1221 1232
Q ss_pred HHhCCCCCCeEEEccCCcCHHHHHHhC
Q 019874 298 VLRHPCVYSFLHVPVQSGSDAVLSVSQ 324 (334)
Q Consensus 298 l~~~~~g~~~l~igiQSgsd~vLk~M~ 324 (334)
..+ +|..|+--| +.++++++..+
T Consensus 76 a~~--aGA~FivSP--~~~~~v~~~~~ 98 (196)
T PF01081_consen 76 AIA--AGAQFIVSP--GFDPEVIEYAR 98 (196)
T ss_dssp HHH--HT-SEEEES--S--HHHHHHHH
T ss_pred HHH--cCCCEEECC--CCCHHHHHHHH
Confidence 222 356666666 57777776554
No 296
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.71 E-value=2e+02 Score=29.06 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE
Q 019874 75 SEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV 129 (334)
Q Consensus 75 se~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV 129 (334)
-|++...|+..|. .......+|++|+ ++-..++..+..+++++|+.|..+.
T Consensus 316 veRl~~~l~~~~~-~~~~~~~~~v~v~---~~~~~~~~~a~~la~~LR~~g~~~~ 366 (429)
T COG0124 316 VERLILALEEEGK-EDPVETRVDVYVV---PLGEDAEPEALKLAQKLRAAGISVE 366 (429)
T ss_pred HHHHHHHHHHcCC-CCCcCCCCCEEEE---EcCchhHHHHHHHHHHHHHcCCcEE
Confidence 5899999999986 2333567899988 4445556788889999999887654
No 297
>PRK15482 transcriptional regulator MurR; Provisional
Probab=24.70 E-value=3.5e+02 Score=25.07 Aligned_cols=70 Identities=7% Similarity=0.116 Sum_probs=45.3
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeC------------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCC
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~------------~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~ 125 (334)
-++|||.. |..+..=.+.+...|...|+...- ...+-|++|+-|-+ ... ..+.++++.++++|
T Consensus 135 A~~I~i~G--~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~s--g~t-~~~~~~~~~a~~~g 209 (285)
T PRK15482 135 APFIQITG--LGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYS--GSK-KEIVLCAEAARKQG 209 (285)
T ss_pred CCeeEEEE--eChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEEEeCC--CCC-HHHHHHHHHHHHCC
Confidence 35666554 446666677777788888875531 12345888876654 222 35777889999999
Q ss_pred CCEE-EEc
Q 019874 126 KPLV-VAG 132 (334)
Q Consensus 126 ~~VV-v~G 132 (334)
.+|| +|+
T Consensus 210 ~~iI~IT~ 217 (285)
T PRK15482 210 ATVIAITS 217 (285)
T ss_pred CEEEEEeC
Confidence 8766 544
No 298
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=24.69 E-value=4.1e+02 Score=24.75 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=35.8
Q ss_pred EEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 019874 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (334)
Q Consensus 63 i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~ 131 (334)
+...|+..+..+...+..... +....+|+++++...........+.++++++++.|.+|++-
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~-------~~l~~~d~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D 167 (312)
T PRK09513 106 FNFSGFEVTPADWERFVTDSL-------SWLGQFDMVAVSGSLPRGVSPEAFTDWMTRLRSQCPCIIFD 167 (312)
T ss_pred EeCCCCCCCHHHHHHHHHHHH-------hhcCCCCEEEEECCCCCCCCHHHHHHHHHHHHhcCCEEEEE
Confidence 444566665544443322221 12367899988765443333445667778888778777753
No 299
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=24.53 E-value=1.4e+02 Score=24.52 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=37.0
Q ss_pred CCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccc
Q 019874 67 GCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCV 134 (334)
Q Consensus 67 GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~ 134 (334)
|=..|.+|.......++..- + ...|.++|-|. +..+...+++++++|++|++.|-.
T Consensus 77 ~~~~~~~D~~l~~d~~~~~~-~-----~~~d~ivLvSg------D~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 77 GSGKKGVDVALAIDALELAY-K-----RRIDTIVLVSG------DSDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred CCcccCccHHHHHHHHHHhh-h-----cCCCEEEEEEC------CccHHHHHHHHHHcCCEEEEEccC
Confidence 34668888887766665431 1 14577766442 235666788888889999888765
No 300
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=24.52 E-value=96 Score=29.26 Aligned_cols=67 Identities=27% Similarity=0.352 Sum_probs=46.4
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE--ccccCCChh-----h-hccCccEEEcCCChHHHHHHH
Q 019874 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA--GCVPQGSRD-----L-KELEGVSIVGVQQIDRVVEVV 162 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~--GC~a~~~~~-----~-~~~~~d~vvG~~e~~~i~e~l 162 (334)
.-||.++||.=|...+..+.+...++.+.+.|+|+|+= ||-++.+.. + .+...++|=|+.. .|..++
T Consensus 54 kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~~~~~IrGN~s--EI~~La 128 (265)
T COG2145 54 KIADALLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEVKPAAIRGNAS--EIAALA 128 (265)
T ss_pred HhccceEEeeccCChHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhcCCcEEeccHH--HHHHHh
Confidence 34888999999998877777777778888889999863 777776653 1 2223567777653 344444
No 301
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=24.51 E-value=2.8e+02 Score=26.12 Aligned_cols=81 Identities=14% Similarity=0.093 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhH-HHHHHHHh
Q 019874 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL-KEIAEVLR 300 (334)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l-~~l~~l~~ 300 (334)
+++.+++-++.+.+.|+++|.|.| .+ |.-.+..+.+|++.+.+.+| + ..+.++ .|-+ ..--+ ..++.+
T Consensus 145 ~~~~~~~~~~~~~~~G~~~i~l~D-T~---G~~~P~~v~~l~~~l~~~~~--~-~~i~~H-~Hnd-~Gla~AN~laA~-- 213 (280)
T cd07945 145 SPDYVFQLVDFLSDLPIKRIMLPD-TL---GILSPFETYTYISDMVKRYP--N-LHFDFH-AHND-YDLAVANVLAAV-- 213 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC-CC---CCCCHHHHHHHHHHHHhhCC--C-CeEEEE-eCCC-CCHHHHHHHHHH--
Confidence 678999999999999999998854 22 33334567889999876554 2 244443 2222 11111 113333
Q ss_pred CCCCCCeEEEccCC
Q 019874 301 HPCVYSFLHVPVQS 314 (334)
Q Consensus 301 ~~~g~~~l~igiQS 314 (334)
.+|+.+++-.+-.
T Consensus 214 -~aGa~~vd~s~~G 226 (280)
T cd07945 214 -KAGIKGLHTTVNG 226 (280)
T ss_pred -HhCCCEEEEeccc
Confidence 3588888866654
No 302
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=24.43 E-value=63 Score=29.63 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=22.0
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EEcccc
Q 019874 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCVP 135 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v~GC~a 135 (334)
.++|+.+|.- +|+... ....+.+++++++-+.|| +|=|..
T Consensus 49 ~~~dil~VeG-~i~~~~-~~~~~~~~~~~~~ak~vVA~GtCA~ 89 (228)
T TIGR03294 49 PEMDVALVEG-SVCLQD-EHSLEEIKELREKAKVVVALGACAA 89 (228)
T ss_pred CCccEEEEeC-CCCCCc-cHHHHHHHHHhccCCEEEEeecccc
Confidence 5699888855 554322 234556666665544444 444533
No 303
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.26 E-value=5.5e+02 Score=24.35 Aligned_cols=66 Identities=12% Similarity=0.051 Sum_probs=36.6
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC-----------------CCCCcEEEEeecccccchHHHHHHHHHH
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------------SEEADIWLINTCTVKSPSQSAMDTLIAK 120 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~-----------------~~~ADlviiNTCtv~~~a~~~~~~~i~~ 120 (334)
+++|.|++-=-+....-.+.+...|++.|+++.-+ ..++|+|++ + -.+-.+.+.++.
T Consensus 10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----i--GGDGT~L~aa~~ 83 (287)
T PRK14077 10 IKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLIS----L--GGDGTLISLCRK 83 (287)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEE----E--CCCHHHHHHHHH
Confidence 66788776532322223456667777778655321 124677754 1 123346666676
Q ss_pred HhcCCCCEE
Q 019874 121 CKSAKKPLV 129 (334)
Q Consensus 121 ~k~~~~~VV 129 (334)
+...++||+
T Consensus 84 ~~~~~~Pil 92 (287)
T PRK14077 84 AAEYDKFVL 92 (287)
T ss_pred hcCCCCcEE
Confidence 666666654
No 304
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=24.24 E-value=2e+02 Score=25.01 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=36.0
Q ss_pred hhHHHHHH---HHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccc
Q 019874 72 QSDSEYMA---GQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCV 134 (334)
Q Consensus 72 ~~Dse~m~---~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~ 134 (334)
.+|-+.|. ..|++.|+ +.++.|++. +.+-+++++.++.++++|.+||++|-.
T Consensus 12 ~SD~~~mk~Aa~~L~~fgi-------~ye~~VvSA----HRTPe~m~~ya~~a~~~g~~viIAgAG 66 (162)
T COG0041 12 KSDWDTMKKAAEILEEFGV-------PYEVRVVSA----HRTPEKMFEYAEEAEERGVKVIIAGAG 66 (162)
T ss_pred cchHHHHHHHHHHHHHcCC-------CeEEEEEec----cCCHHHHHHHHHHHHHCCCeEEEecCc
Confidence 45666665 45565554 356777743 223468999999999999999988853
No 305
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=23.67 E-value=3.2e+02 Score=25.49 Aligned_cols=80 Identities=14% Similarity=0.185 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhH-HHHHHHHh
Q 019874 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL-KEIAEVLR 300 (334)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l-~~l~~l~~ 300 (334)
+++.+++-++.+.+.|+..|.|.| . +|.-.+..+.+|++.+.+.+| . ..+.++ .|-+ +.--+ ..++.+
T Consensus 149 ~~~~~~~~~~~~~~~g~~~i~l~D-T---~G~~~P~~v~~lv~~l~~~~~--~-~~l~~H-~Hnd-~Gla~An~laA~-- 217 (273)
T cd07941 149 NPEYALATLKAAAEAGADWLVLCD-T---NGGTLPHEIAEIVKEVRERLP--G-VPLGIH-AHND-SGLAVANSLAAV-- 217 (273)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEec-C---CCCCCHHHHHHHHHHHHHhCC--C-CeeEEE-ecCC-CCcHHHHHHHHH--
Confidence 688888988998889999988754 3 244445568889999887664 2 344443 2322 11111 113333
Q ss_pred CCCCCCeEEEccC
Q 019874 301 HPCVYSFLHVPVQ 313 (334)
Q Consensus 301 ~~~g~~~l~igiQ 313 (334)
.+|+.+++-.+-
T Consensus 218 -~aGa~~id~s~~ 229 (273)
T cd07941 218 -EAGATQVQGTIN 229 (273)
T ss_pred -HcCCCEEEEecc
Confidence 358899986554
No 306
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=23.58 E-value=2.7e+02 Score=25.95 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=49.6
Q ss_pred EEEeeCCCC-ChhHHHHHHHHHHhCCCee---eCC--------CCCCcEEEEeecccccc--hHHHHHHHHHHHhcCCCC
Q 019874 62 YMKTFGCSH-NQSDSEYMAGQLSAFGYAL---TDN--------SEEADIWLINTCTVKSP--SQSAMDTLIAKCKSAKKP 127 (334)
Q Consensus 62 ~i~t~GC~~-N~~Dse~m~~~L~~~G~~~---~~~--------~~~ADlviiNTCtv~~~--a~~~~~~~i~~~k~~~~~ 127 (334)
-++++.|.. ...+.+.+.+.....|.+. +.+ ...||++.+|.-..... .-+...++++.+......
T Consensus 135 D~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~v 214 (260)
T PRK00278 135 DAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLV 214 (260)
T ss_pred CEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEE
Confidence 356666666 5567777778878888874 222 23689999986543221 112333333333211133
Q ss_pred EEEEcccc-CCChhhhccCcc-EEEcCC
Q 019874 128 LVVAGCVP-QGSRDLKELEGV-SIVGVQ 153 (334)
Q Consensus 128 VVv~GC~a-~~~~~~~~~~~d-~vvG~~ 153 (334)
|..||... +.........+| +++|..
T Consensus 215 IaegGI~t~ed~~~~~~~Gad~vlVGsa 242 (260)
T PRK00278 215 VSESGIFTPEDLKRLAKAGADAVLVGES 242 (260)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECHH
Confidence 45678753 111223344567 677764
No 307
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.18 E-value=5.8e+02 Score=23.31 Aligned_cols=91 Identities=10% Similarity=0.038 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCC
Q 019874 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 304 (334)
Q Consensus 225 ~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g 304 (334)
+-++-++.+.+.|++++.+++-|-. .|.+ .++ ++++++.+... . .+.++-- ...+ +++..+.+ .|
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a-~~~~--~n~-~~i~~i~~~~~--~--~v~vGGG-Irs~----e~~~~~l~--~G 95 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAA-EGVG--NNE-MYIKEISKIGF--D--WIQVGGG-IRDI----EKAKRLLS--LD 95 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-CCCc--chH-HHHHHHHhhCC--C--CEEEeCC-cCCH----HHHHHHHH--CC
Confidence 4555566677789999999998843 3432 334 88888876211 1 3333211 1111 22444554 37
Q ss_pred CCeEEEccCCc-CHHHHHHhCCCCCcC
Q 019874 305 YSFLHVPVQSG-SDAVLSVSQKIVPTK 330 (334)
Q Consensus 305 ~~~l~igiQSg-sd~vLk~M~R~~t~e 330 (334)
+..+-+|-... +++.++.+-+.|..+
T Consensus 96 a~kvvigt~a~~~p~~~~~~~~~~g~~ 122 (232)
T PRK13586 96 VNALVFSTIVFTNFNLFHDIVREIGSN 122 (232)
T ss_pred CCEEEECchhhCCHHHHHHHHHHhCCC
Confidence 88888888874 567777776555433
No 308
>cd03361 TOPRIM_TopoIA_RevGyr TopoIA_RevGyr : The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to the ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=22.78 E-value=2.7e+02 Score=24.21 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=36.3
Q ss_pred CCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHH-HHHHHHHhCCCCCCceEEEeec
Q 019874 205 ACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI-LLNAIVAELPPDGSTMLRIGMT 283 (334)
Q Consensus 205 ~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~-Ll~~l~~~i~~~~~~~ir~~~~ 283 (334)
.|..|..... ..-..+++.|+.++ .++.+|++.. | +++. |+.+.. +++.+.. .. ....|+||+++
T Consensus 93 ~cp~c~~~~~------~~~~~~~~~l~~l~-~~~~~iiiat-D---~drE-Ge~I~~~i~~~~~~-~~-~~v~R~~fs~i 158 (170)
T cd03361 93 KCPRCGSENI------DDKLETLEALRELA-LEVDEVLIAT-D---PDTE-GEKIAWDVYLALRP-YN-KNIKRAEFHEV 158 (170)
T ss_pred cCCcCCCcCC------cchHHHHHHHHHHH-hhCCEEEEec-C---CCcc-HHHHHHHHHHHhcc-CC-CCeEEEEEecC
Confidence 4666643332 23457888888887 4678887743 2 2222 233333 3333321 11 14678888776
Q ss_pred CCC
Q 019874 284 NPP 286 (334)
Q Consensus 284 ~p~ 286 (334)
.+.
T Consensus 159 t~~ 161 (170)
T cd03361 159 TRR 161 (170)
T ss_pred CHH
Confidence 654
No 309
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=22.67 E-value=5.7e+02 Score=23.02 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=53.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEe-ecCCCChhhhHHHHHH
Q 019874 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAE 297 (334)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~-~~~p~~i~~~l~~l~~ 297 (334)
...+.++.++=++.|.+.|+..|.+.+.....+- .......++++.+.+..+ ..++. +.... . +.+..
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~-----~~~~~~l~~~~---~--~~i~~ 82 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVP-----NVKLQALVRNR---E--KGIER 82 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccC-----CcEEEEEccCc---h--hhHHH
Confidence 4569999999999999999999988764432110 112456788888876432 23342 23221 2 22455
Q ss_pred HHhCCCCCCeEEEccCCcCH
Q 019874 298 VLRHPCVYSFLHVPVQSGSD 317 (334)
Q Consensus 298 l~~~~~g~~~l~igiQSgsd 317 (334)
+++ .+...+++.+ ++|+
T Consensus 83 a~~--~g~~~i~i~~-~~s~ 99 (265)
T cd03174 83 ALE--AGVDEVRIFD-SASE 99 (265)
T ss_pred HHh--CCcCEEEEEE-ecCH
Confidence 554 4788999999 4554
No 310
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=22.65 E-value=3.9e+02 Score=24.63 Aligned_cols=82 Identities=12% Similarity=0.113 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhH-HHHHHHH
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL-KEIAEVL 299 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l-~~l~~l~ 299 (334)
.+++.+++-++.+.+.|+..|.|.| . +|.-.+..+.+|++.+.+.++ ...+.++ .|-+ +.--+ ..++.+
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i~l~D-T---~G~~~P~~v~~lv~~l~~~~~---~~~l~~H-~Hn~-~GlA~AN~laAi- 207 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCVYVTD-S---AGAMLPDDVRERVRALREALD---PTPVGFH-GHNN-LGLAVANSLAAV- 207 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC-C---CCCcCHHHHHHHHHHHHHhCC---CceEEEE-ecCC-cchHHHHHHHHH-
Confidence 4779999999999889999998844 2 244334578889999877653 2244443 2221 11111 113333
Q ss_pred hCCCCCCeEEEccCC
Q 019874 300 RHPCVYSFLHVPVQS 314 (334)
Q Consensus 300 ~~~~g~~~l~igiQS 314 (334)
.+|+.+++-.+-.
T Consensus 208 --~aGa~~vd~s~~G 220 (263)
T cd07943 208 --EAGATRIDGSLAG 220 (263)
T ss_pred --HhCCCEEEeeccc
Confidence 2588888876653
No 311
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=22.65 E-value=3.9e+02 Score=21.15 Aligned_cols=65 Identities=6% Similarity=0.080 Sum_probs=38.1
Q ss_pred eeCCCCChhHHHHHHHHHHhC-CCeee--------CCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EEc
Q 019874 65 TFGCSHNQSDSEYMAGQLSAF-GYALT--------DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAG 132 (334)
Q Consensus 65 t~GC~~N~~Dse~m~~~L~~~-G~~~~--------~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v~G 132 (334)
-+||.-+..=.+.+...|... |.... ....+-|++|+-|-+= .. ....+.++.++++|.++| +++
T Consensus 4 i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG--~t-~e~i~~~~~a~~~g~~iI~IT~ 78 (119)
T cd05017 4 ILGMGGSGIGGDLLESLLLDEAKIPVYVVKDYTLPAFVDRKTLVIAVSYSG--NT-EETLSAVEQAKERGAKIVAITS 78 (119)
T ss_pred EEEcCHHHHHHHHHHHHHHhccCCCEEEecCccCcCCCCCCCEEEEEECCC--CC-HHHHHHHHHHHHCCCEEEEEeC
Confidence 345555555555666666653 55432 1123458888866542 22 457778888888898765 554
No 312
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=22.58 E-value=2.6e+02 Score=20.99 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 019874 72 QSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (334)
Q Consensus 72 ~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~ 131 (334)
--|.|.++..++..||..+--. + .....+..+++++.++ .|..++++
T Consensus 19 s~DGe~ia~~~~~~G~~~iRGS-----------s-~rgg~~Alr~~~~~lk-~G~~~~it 65 (74)
T PF04028_consen 19 SRDGELIARVLERFGFRTIRGS-----------S-SRGGARALREMLRALK-EGYSIAIT 65 (74)
T ss_pred CcCHHHHHHHHHHcCCCeEEeC-----------C-CCcHHHHHHHHHHHHH-CCCeEEEe
Confidence 4699999999999998765321 2 1223455677777776 56566654
No 313
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=22.54 E-value=6.1e+02 Score=23.27 Aligned_cols=81 Identities=14% Similarity=0.055 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHh
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~ 300 (334)
.+++.+++-++.+.+.|+..|.|.| . +|.-.+..+.+|+..+.+.++ ..+.++.=|=..+.- ..-+..+
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i~l~D-T---~G~~~P~~v~~lv~~l~~~~~----~~l~~H~Hn~~Gla~-An~laAi-- 204 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRLRFAD-T---VGILDPFTTYELIRRLRAATD----LPLEFHAHNDLGLAT-ANTLAAV-- 204 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCC-C---CCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCCChHH-HHHHHHH--
Confidence 4789999999999999999998854 2 233334568888888876542 234443211111111 0113333
Q ss_pred CCCCCCeEEEccC
Q 019874 301 HPCVYSFLHVPVQ 313 (334)
Q Consensus 301 ~~~g~~~l~igiQ 313 (334)
..|+.+++-.+-
T Consensus 205 -~aG~~~vd~s~~ 216 (259)
T cd07939 205 -RAGATHVSVTVN 216 (259)
T ss_pred -HhCCCEEEEecc
Confidence 257888887664
No 314
>PRK13669 hypothetical protein; Provisional
Probab=22.25 E-value=88 Score=23.97 Aligned_cols=39 Identities=28% Similarity=0.601 Sum_probs=29.4
Q ss_pred ccCCCCCCCcccccc---ccCCcc-ccCCHHHHHHHHHHHHHC
Q 019874 198 INVGCLGACTYCKTK---HARGHL-GSYTVESLVGRVRTVIAD 236 (334)
Q Consensus 198 isrGC~~~CsfC~ip---~~rG~~-rsr~~e~Iv~Ei~~l~~~ 236 (334)
+--||-..|.-|... ...|+. .--++|++++.|...++.
T Consensus 32 ie~gCls~CG~C~~~~FAlVng~~V~a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 32 LEYGCLGYCGICSEGLFALVNGEVVEGETPEELVENIYAHLEE 74 (78)
T ss_pred EEcchhhhCcCcccCceEEECCeEeecCCHHHHHHHHHHHHhh
Confidence 556899999999864 346774 457889999988877653
No 315
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=22.15 E-value=6.5e+02 Score=24.06 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEe-eccCCCCCC-CCCCCHHHHHHHHHHhCCCCCCceEEEeecCCC-ChhhhHHHHHHH
Q 019874 222 TVESLVGRVRTVIADGVKEVWLS-SEDTGAYGR-DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKEIAEV 298 (334)
Q Consensus 222 ~~e~Iv~Ei~~l~~~G~kei~l~-~~d~~~yg~-d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~-~i~~~l~~l~~l 298 (334)
++++++++++.+.+.|++-|-+- |.+ |.. +....-.+.++++.+.++ ....+++.. |-. ...+-++-+..+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~---~~~~~~~~~d~~~v~~ir~~~g--~~~~l~vDa-N~~~~~~~a~~~~~~l 212 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGP---DSGGEDLREDLARVRAVREAVG--PDVDLMVDA-NGRWDLAEAIRLARAL 212 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC---CcchHHHHHHHHHHHHHHHhhC--CCCEEEEEC-CCCCCHHHHHHHHHHh
Confidence 78999999999989999888762 211 100 000123567777776553 345666643 322 222222112222
Q ss_pred HhCCCCCCeEEEccCCcCHHHHHHhCCC
Q 019874 299 LRHPCVYSFLHVPVQSGSDAVLSVSQKI 326 (334)
Q Consensus 299 ~~~~~g~~~l~igiQSgsd~vLk~M~R~ 326 (334)
. +.++.+++=|+...+-+-++..++.
T Consensus 213 ~--~~~i~~iEqP~~~~~~~~~~~l~~~ 238 (357)
T cd03316 213 E--EYDLFWFEEPVPPDDLEGLARLRQA 238 (357)
T ss_pred C--ccCCCeEcCCCCccCHHHHHHHHHh
Confidence 2 2356788888887766666666554
No 316
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=22.11 E-value=2.2e+02 Score=25.06 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=41.1
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeee--C---CCCCCcEEEEeeccccc--c--hHHHHHHHHHHHhcCCCCE
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT--D---NSEEADIWLINTCTVKS--P--SQSAMDTLIAKCKSAKKPL 128 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~--~---~~~~ADlviiNTCtv~~--~--a~~~~~~~i~~~k~~~~~V 128 (334)
|+++.|.++..... .+...|+..|++++ + +.+++|.|+|.-..... . ......+.++++.+.+++
T Consensus 1 ~m~~~i~~~~g~~~-----~~~~~l~~~g~~~~~~~~~~~l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~P- 74 (189)
T PRK13525 1 MMKIGVLALQGAVR-----EHLAALEALGAEAVEVRRPEDLDEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLP- 74 (189)
T ss_pred CCEEEEEEcccCHH-----HHHHHHHHCCCEEEEeCChhHhccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCe-
Confidence 45788888863322 23466888897664 2 23568999997643111 0 012233556777666654
Q ss_pred EEEcccc
Q 019874 129 VVAGCVP 135 (334)
Q Consensus 129 Vv~GC~a 135 (334)
|+|=|+.
T Consensus 75 ilGIC~G 81 (189)
T PRK13525 75 VFGTCAG 81 (189)
T ss_pred EEEECHH
Confidence 4444654
No 317
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=21.99 E-value=1.2e+02 Score=26.16 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=24.6
Q ss_pred CCCCcEEEEeecccccchHHHHHHHHHHHhcC
Q 019874 93 SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (334)
Q Consensus 93 ~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~ 124 (334)
.+++|+|+|-+.+-.......+.+.+.+++.+
T Consensus 37 ~~~yD~i~lG~w~d~G~~d~~~~~fl~~l~~K 68 (160)
T PF12641_consen 37 LEDYDLIFLGFWIDKGTPDKDMKEFLKKLKGK 68 (160)
T ss_pred CCCCCEEEEEcCccCCCCCHHHHHHHHHccCC
Confidence 57799999988776666677888888887543
No 318
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=21.87 E-value=3.5e+02 Score=21.41 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=15.9
Q ss_pred HHHHHHHHHhCCCeee----------CCCCCCcEEEE
Q 019874 75 SEYMAGQLSAFGYALT----------DNSEEADIWLI 101 (334)
Q Consensus 75 se~m~~~L~~~G~~~~----------~~~~~ADlvii 101 (334)
.+.|...+++.|.+.. +..+++|++++
T Consensus 17 a~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill 53 (99)
T cd05565 17 ANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVIL 53 (99)
T ss_pred HHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEE
Confidence 3556677777776431 12356777766
No 319
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=21.86 E-value=3.4e+02 Score=26.36 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=38.3
Q ss_pred cccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCC--------CCCHHHHHHHHHHhCC
Q 019874 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELP 271 (334)
Q Consensus 212 p~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~--------~~~l~~Ll~~l~~~i~ 271 (334)
+..-|- ...+++.+++|++.+.+.|++.|.|+|..- . +|. ..-+..-++.|.+.+|
T Consensus 50 ~smPg~-~r~sid~l~~~~~~~~~~Gi~~v~lFgv~~--~-Kd~~gs~A~~~~g~v~~air~iK~~~p 113 (322)
T PRK13384 50 STLPGI-SRLPESALADEIERLYALGIRYVMPFGISH--H-KDAKGSDTWDDNGLLARMVRTIKAAVP 113 (322)
T ss_pred CCCCCc-ceECHHHHHHHHHHHHHcCCCEEEEeCCCC--C-CCCCcccccCCCChHHHHHHHHHHHCC
Confidence 344343 346899999999999999999999988521 1 221 1224566777776666
No 320
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=21.85 E-value=3.2e+02 Score=25.56 Aligned_cols=160 Identities=22% Similarity=0.283 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCc-EEEEeecccccchHHHHHHHHHHHhcC-CCCEEEEccccCCCh-h-hhccCcc-E
Q 019874 74 DSEYMAGQLSAFGYALTDNSEEAD-IWLINTCTVKSPSQSAMDTLIAKCKSA-KKPLVVAGCVPQGSR-D-LKELEGV-S 148 (334)
Q Consensus 74 Dse~m~~~L~~~G~~~~~~~~~AD-lviiNTCtv~~~a~~~~~~~i~~~k~~-~~~VVv~GC~a~~~~-~-~~~~~~d-~ 148 (334)
|.-.++..-.++| || +|+++- |-......-+++.+++..+. ..|+-|||=.-+..- . +....+| +
T Consensus 31 DpVelA~~Y~e~G---------ADElvFlDI-tAs~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKV 100 (256)
T COG0107 31 DPVELAKRYNEEG---------ADELVFLDI-TASSEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKV 100 (256)
T ss_pred ChHHHHHHHHHcC---------CCeEEEEec-ccccccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCee
Confidence 4444555555444 44 666643 22222234566667666544 568888875433221 1 2233567 4
Q ss_pred EEcCCChHHHHHHHHHHhc--CCceeecccccCCCCCCccccccceeeeeeccCCCCCCCccccccccCCc-cccCCHHH
Q 019874 149 IVGVQQIDRVVEVVEETLK--GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVES 225 (334)
Q Consensus 149 vvG~~e~~~i~e~l~~~~~--g~~~~~~~~~~~~~~~~p~~~~~~~~~~v~isrGC~~~CsfC~ip~~rG~-~rsr~~e~ 225 (334)
=+..... .=|++|.+.-. |..--.. ..+ ++ + . ..| ..|.|+...+. |+ .....+-+
T Consensus 101 SINsaAv-~~p~lI~~~a~~FGsQciVv------aID-ak-r-~--------~~g--~~~~~~v~~~g-Gr~~t~~d~~~ 159 (256)
T COG0107 101 SINSAAV-KDPELITEAADRFGSQCIVV------AID-AK-R-V--------PDG--ENGWYEVFTHG-GREDTGLDAVE 159 (256)
T ss_pred eeChhHh-cChHHHHHHHHHhCCceEEE------EEE-ee-e-c--------cCC--CCCcEEEEecC-CCcCCCcCHHH
Confidence 4554442 33666654321 2211000 001 00 0 0 144 67888875443 43 45566666
Q ss_pred HHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhC
Q 019874 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (334)
Q Consensus 226 Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (334)
...|++ +.|.-||.|++-|-- |...+.++ +|++.+.+..
T Consensus 160 Wa~~~e---~~GAGEIlLtsmD~D--Gtk~GyDl-~l~~~v~~~v 198 (256)
T COG0107 160 WAKEVE---ELGAGEILLTSMDRD--GTKAGYDL-ELTRAVREAV 198 (256)
T ss_pred HHHHHH---HcCCceEEEeeeccc--ccccCcCH-HHHHHHHHhC
Confidence 666655 469999999875421 22223344 7888887644
No 321
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=21.33 E-value=78 Score=29.44 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCC-CEEEEcccc
Q 019874 112 SAMDTLIAKCKSAKK-PLVVAGCVP 135 (334)
Q Consensus 112 ~~~~~~i~~~k~~~~-~VVv~GC~a 135 (334)
+.+..+|..+.++|+ +|||||..-
T Consensus 43 ~~a~~~i~~i~~rgk~PIlvGGTgl 67 (253)
T PF01715_consen 43 RDAREAIEDILARGKIPILVGGTGL 67 (253)
T ss_dssp HHHHHHHHHHHHTT-EEEEEES-HH
T ss_pred HHHHHHHHHHHhcCCeEEEECChHH
Confidence 456667777777774 899999743
No 322
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=21.26 E-value=2.8e+02 Score=24.48 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=39.7
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeee-----CCCCCCcEEEEeecccccchH-----HHHHHHHHHHhcCCCCEE
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-----DNSEEADIWLINTCTVKSPSQ-----SAMDTLIAKCKSAKKPLV 129 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~-----~~~~~ADlviiNTCtv~~~a~-----~~~~~~i~~~k~~~~~VV 129 (334)
++.+..+|++-+ -.++..|+..|.++. ++..++|.|||..-.....+. ....+.++++.+.+.+ |
T Consensus 1 ~i~~~d~~~~~~----~~i~~~l~~~G~~v~~~~~~~~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~p-v 75 (205)
T PRK13141 1 MIAIIDYGMGNL----RSVEKALERLGAEAVITSDPEEILAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASGKP-L 75 (205)
T ss_pred CEEEEEcCCchH----HHHHHHHHHCCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCCCc-E
Confidence 367888995533 346777888887553 223578999995421111111 1234555655555554 5
Q ss_pred EEcccc
Q 019874 130 VAGCVP 135 (334)
Q Consensus 130 v~GC~a 135 (334)
+|=|+.
T Consensus 76 lGIC~G 81 (205)
T PRK13141 76 LGICLG 81 (205)
T ss_pred EEECHH
Confidence 555764
No 323
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=21.08 E-value=4.4e+02 Score=24.38 Aligned_cols=83 Identities=11% Similarity=0.148 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCC-ceEEEeecCCCChhhhH-HHHHHH
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIGMTNPPFILEHL-KEIAEV 298 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~-~~ir~~~~~p~~i~~~l-~~l~~l 298 (334)
.+++.+++-++.+.+.|+..|.|.| . +|.-.+..+.+|++.+.+.++ .. ..+.++. |-. ..--+ ..++.+
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~l~D-T---~G~~~P~~v~~lv~~l~~~~~--~~~i~l~~H~-Hn~-~GlA~An~laAi 211 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTINIPD-T---VGYLTPEEFGELIKKLKENVP--NIKVPISVHC-HND-LGLAVANSLAAV 211 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC-C---CCCCCHHHHHHHHHHHHHhCC--CCceeEEEEe-cCC-cchHHHHHHHHH
Confidence 4789999999999999999998854 2 244334568889999887654 21 2333332 211 11111 113333
Q ss_pred HhCCCCCCeEEEccCC
Q 019874 299 LRHPCVYSFLHVPVQS 314 (334)
Q Consensus 299 ~~~~~g~~~l~igiQS 314 (334)
. +|+.+|+-.+--
T Consensus 212 ~---aG~~~iD~s~~G 224 (268)
T cd07940 212 E---AGARQVECTING 224 (268)
T ss_pred H---hCCCEEEEEeec
Confidence 2 478888876654
No 324
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=20.99 E-value=3.8e+02 Score=25.08 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhH-HHHHHHH
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL-KEIAEVL 299 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l-~~l~~l~ 299 (334)
.+++.+.+-++.+.+.|+..|.|.| . +|.-.+..+.+++..+.+.+ + ..+-++ .|-+ +.--+ ..+..+
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~D-T---~G~~~P~~v~~lv~~l~~~~---~-~~l~~H-~Hnd-~GlA~aN~laA~- 214 (275)
T cd07937 146 HTLEYYVKLAKELEDMGADSICIKD-M---AGLLTPYAAYELVKALKKEV---G-LPIHLH-THDT-SGLAVATYLAAA- 214 (275)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC-C---CCCCCHHHHHHHHHHHHHhC---C-CeEEEE-ecCC-CChHHHHHHHHH-
Confidence 4788888888988899999998854 2 24333456788888887654 2 234433 2222 11111 113333
Q ss_pred hCCCCCCeEEEccCC
Q 019874 300 RHPCVYSFLHVPVQS 314 (334)
Q Consensus 300 ~~~~g~~~l~igiQS 314 (334)
.+|+.+++-.+-.
T Consensus 215 --~aGa~~vd~sv~G 227 (275)
T cd07937 215 --EAGVDIVDTAISP 227 (275)
T ss_pred --HhCCCEEEEeccc
Confidence 3589999976653
No 325
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=20.98 E-value=86 Score=26.83 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.8
Q ss_pred HHCCCcEEEEeeccCC
Q 019874 234 IADGVKEVWLSSEDTG 249 (334)
Q Consensus 234 ~~~G~kei~l~~~d~~ 249 (334)
...|+++|.|+|+|++
T Consensus 151 ~~lG~~~I~L~G~D~~ 166 (170)
T PF01973_consen 151 YYLGFKPIYLIGQDLA 166 (170)
T ss_pred HHHCCCcEEEEeecCC
Confidence 3569999999999976
No 326
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.94 E-value=3.7e+02 Score=24.13 Aligned_cols=89 Identities=10% Similarity=0.068 Sum_probs=50.0
Q ss_pred HHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCC
Q 019874 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 305 (334)
Q Consensus 226 Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~ 305 (334)
.++-++.+.+.|++++.+.+-|...-+. ....++++++.+..+ ..+-++. -...+ +++..+.. .|+
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~~~---~~~~~~i~~i~~~~~----~~l~v~G-Gi~~~----~~~~~~~~--~Ga 99 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFEGE---RKNAEAIEKIIEAVG----VPVQLGG-GIRSA----EDAASLLD--LGV 99 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhcCC---cccHHHHHHHHHHcC----CcEEEcC-CcCCH----HHHHHHHH--cCC
Confidence 3444455667899999998766432222 245577777776432 1222221 11111 22344444 488
Q ss_pred CeEEEccCCc-CHHHHHHhCCCCC
Q 019874 306 SFLHVPVQSG-SDAVLSVSQKIVP 328 (334)
Q Consensus 306 ~~l~igiQSg-sd~vLk~M~R~~t 328 (334)
..+++|-... +++.++.+.+.+-
T Consensus 100 ~~v~iGs~~~~~~~~~~~i~~~~g 123 (241)
T PRK13585 100 DRVILGTAAVENPEIVRELSEEFG 123 (241)
T ss_pred CEEEEChHHhhChHHHHHHHHHhC
Confidence 9999998776 4556666655553
No 327
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=20.94 E-value=6e+02 Score=22.61 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=35.9
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EEccccCCChhhhcc--Ccc--EEEcCCChHHHHH
Q 019874 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VAGCVPQGSRDLKEL--EGV--SIVGVQQIDRVVE 160 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v~GC~a~~~~~~~~~--~~d--~vvG~~e~~~i~e 160 (334)
.+-|++++-|.+=. . +.+.++++.+|++|.+|| ++|-.... +..+ .+| +.+...+..++.+
T Consensus 108 ~~gDvli~iS~SG~--s-~~v~~a~~~Ak~~G~~vI~IT~~~~s~---l~~l~~~~D~~i~ip~~~~~~v~e 173 (196)
T PRK10886 108 HAGDVLLAISTRGN--S-RDIVKAVEAAVTRDMTIVALTGYDGGE---LAGLLGPQDVEIRIPSHRSARIQE 173 (196)
T ss_pred CCCCEEEEEeCCCC--C-HHHHHHHHHHHHCCCEEEEEeCCCCCh---hhhccccCCEEEEcCCCchHHHHH
Confidence 45588887665432 2 357778899999998765 66643222 2232 245 4566656544433
No 328
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.87 E-value=6.8e+02 Score=23.20 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=31.8
Q ss_pred CCCCChhHHHHHHHHHHhCCCeeeC------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE
Q 019874 67 GCSHNQSDSEYMAGQLSAFGYALTD------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV 129 (334)
Q Consensus 67 GC~~N~~Dse~m~~~L~~~G~~~~~------~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV 129 (334)
+++.-..-.+.+.+.|.++|+...- ...++|+|++-- .+-.+...++++ ++||+
T Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iG------GDGT~L~a~~~~---~~Pil 66 (256)
T PRK14075 7 YREEKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVG------GDGTVLKAAKKV---GTPLV 66 (256)
T ss_pred eCccHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEEC------CcHHHHHHHHHc---CCCEE
Confidence 5555555567778888888875432 234789887621 223455555554 56654
No 329
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=20.80 E-value=41 Score=31.78 Aligned_cols=8 Identities=50% Similarity=1.618 Sum_probs=0.0
Q ss_pred CCCCCccc
Q 019874 202 CLGACTYC 209 (334)
Q Consensus 202 C~~~CsfC 209 (334)
|+|.|.||
T Consensus 257 C~hgC~YC 264 (266)
T PF08902_consen 257 CPHGCRYC 264 (266)
T ss_pred CCCCCeec
No 330
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=20.73 E-value=1.9e+02 Score=25.99 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcC-CCCEEEEccccCCCh--h-hhccCcc-
Q 019874 73 SDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-KKPLVVAGCVPQGSR--D-LKELEGV- 147 (334)
Q Consensus 73 ~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~-~~~VVv~GC~a~~~~--~-~~~~~~d- 147 (334)
.|...++..+.+.| +|.+++.+-+.......--+..++++++. +.||+++|...+... + .....+|
T Consensus 153 ~~~~~~~~~~~~~G---------~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadg 223 (232)
T TIGR03572 153 RDPVEWAREAEQLG---------AGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASA 223 (232)
T ss_pred CCHHHHHHHHHHcC---------CCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCE
Confidence 34555667776655 57777766433211111124456666544 678988887653221 1 1233466
Q ss_pred EEEcC
Q 019874 148 SIVGV 152 (334)
Q Consensus 148 ~vvG~ 152 (334)
+++|.
T Consensus 224 V~vg~ 228 (232)
T TIGR03572 224 VAAAS 228 (232)
T ss_pred EEEeh
Confidence 56664
No 331
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=20.72 E-value=27 Score=24.98 Aligned_cols=9 Identities=44% Similarity=1.272 Sum_probs=8.4
Q ss_pred CCCCCcccc
Q 019874 202 CLGACTYCK 210 (334)
Q Consensus 202 C~~~CsfC~ 210 (334)
|.|-||||.
T Consensus 25 CSfECTFC~ 33 (57)
T PF06906_consen 25 CSFECTFCA 33 (57)
T ss_pred EeEeCcccH
Confidence 999999996
No 332
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=20.63 E-value=6.3e+02 Score=24.42 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCC-ChhhhHHHHHHHH
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKEIAEVL 299 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~-~i~~~l~~l~~l~ 299 (334)
.++++.+++++.+++.|++-+-+= + |.+. ..-.+.++++.+.++ ....+++. .|-. ...+-+.-+..|.
T Consensus 137 ~~~e~~~~~a~~~~~~Gf~~~Kik---v---g~~~-~~d~~~v~~vRe~~G--~~~~l~vD-aN~~~~~~~A~~~~~~l~ 206 (352)
T cd03328 137 YDDDRLREQLSGWVAQGIPRVKMK---I---GRDP-RRDPDRVAAARRAIG--PDAELFVD-ANGAYSRKQALALARAFA 206 (352)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEee---c---CCCH-HHHHHHHHHHHHHcC--CCCeEEEE-CCCCCCHHHHHHHHHHHH
Confidence 478899999999999999888762 1 2111 122467777776664 34456654 3322 2222222223332
Q ss_pred hCCCCCCeEEEccCCcCHHHHHHhCCC
Q 019874 300 RHPCVYSFLHVPVQSGSDAVLSVSQKI 326 (334)
Q Consensus 300 ~~~~g~~~l~igiQSgsd~vLk~M~R~ 326 (334)
+-+..++.=|+...+-+-++..++.
T Consensus 207 --~~~~~~~EeP~~~~d~~~~~~l~~~ 231 (352)
T cd03328 207 --DEGVTWFEEPVSSDDLAGLRLVRER 231 (352)
T ss_pred --HhCcchhhCCCChhhHHHHHHHHhh
Confidence 2345677777777776777666655
No 333
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=20.63 E-value=3.1e+02 Score=25.93 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCCeeeCCCCC--CcEEEE
Q 019874 75 SEYMAGQLSAFGYALTDNSEE--ADIWLI 101 (334)
Q Consensus 75 se~m~~~L~~~G~~~~~~~~~--ADlvii 101 (334)
.+.+...|+..||+++++.++ +|+|++
T Consensus 99 ~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~ 127 (269)
T COG0647 99 EEGLKEELEGAGFELVDEEEPARVDAVVV 127 (269)
T ss_pred CcchHHHHHhCCcEEeccCCCCcccEEEE
Confidence 566889999999999987665 577777
No 334
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=20.56 E-value=4e+02 Score=24.47 Aligned_cols=70 Identities=11% Similarity=0.214 Sum_probs=42.1
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeC------------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCC
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~------------~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~ 125 (334)
.++|+|...| ....=.+.+...|...|..... ...+-|++|+-|-+ ... ..+.+.++.++++|
T Consensus 128 a~~I~i~G~G--~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~D~vI~iS~s--G~t-~~~~~~~~~ak~~g 202 (284)
T PRK11302 128 AKKISFFGLG--ASAAVAHDAQNKFFRFNVPVVYFDDIVMQRMSCMNSSDGDVVVLISHT--GRT-KSLVELAQLARENG 202 (284)
T ss_pred CCeEEEEEcc--hHHHHHHHHHHHHHhcCCceEecCCHHHHHHHHHhCCCCCEEEEEeCC--CCC-HHHHHHHHHHHHcC
Confidence 3566655544 5555455555566666754431 12455888875544 333 34777888999999
Q ss_pred CCEE-EEc
Q 019874 126 KPLV-VAG 132 (334)
Q Consensus 126 ~~VV-v~G 132 (334)
.+|| +|+
T Consensus 203 ~~vI~IT~ 210 (284)
T PRK11302 203 ATVIAITS 210 (284)
T ss_pred CeEEEECC
Confidence 8766 555
No 335
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=20.53 E-value=2.9e+02 Score=27.99 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=40.1
Q ss_pred ceEEEEeeCCCCChhHH----HHHHHHHHhCCCeeeCCCCCCcEEEEe-ecccccchHHHHHHHHHHHhcCCCCEEEEcc
Q 019874 59 ETIYMKTFGCSHNQSDS----EYMAGQLSAFGYALTDNSEEADIWLIN-TCTVKSPSQSAMDTLIAKCKSAKKPLVVAGC 133 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Ds----e~m~~~L~~~G~~~~~~~~~ADlviiN-TCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC 133 (334)
-.+|+-|.|=--++..+ +.|+..|.+. ..|.||+. ||.+=.. -.--+.+++.+.|.++|.-.|
T Consensus 305 ~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~d---------gVDAvILtstCgtCtr---cga~m~keiE~~GIPvV~i~~ 372 (431)
T TIGR01917 305 FKYFYSTTGNGTAVANSKQFAKEFSKELLAA---------GVDAVILTSTUGTCTR---CGATMVKEIERAGIPVVHICT 372 (431)
T ss_pred cCeeEEccCCCccHHHHHHHHHHHHHHHHHc---------CCCEEEEcCCCCcchh---HHHHHHHHHHHcCCCEEEEee
Confidence 34566676665555444 4455555544 46888887 8875332 222345666677899888777
Q ss_pred ccC
Q 019874 134 VPQ 136 (334)
Q Consensus 134 ~a~ 136 (334)
+..
T Consensus 373 ~~p 375 (431)
T TIGR01917 373 VTP 375 (431)
T ss_pred chh
Confidence 663
No 336
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=20.44 E-value=6.6e+02 Score=23.71 Aligned_cols=92 Identities=9% Similarity=-0.014 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeec-------CCCChhhhHHHH
Q 019874 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLKEI 295 (334)
Q Consensus 223 ~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~-------~p~~i~~~l~~l 295 (334)
.+++++.++..-+.|+..+|+....+..|+.- ..-.-++-.++.. -.+||+++. +|..+-+..-.|
T Consensus 21 ~~~~~~~a~~Ae~lGfd~~w~~Ehh~~~~~~~--~~p~~~la~lA~~-----T~rI~lgt~v~~~~~~~P~~~Ae~~atL 93 (315)
T cd01096 21 LDRMVDTGVLVDKLNFDTALVLEHHFSENGIV--GAPLTAAAFLLGL-----TERLNVGSLNQVITTHHPVRIAEEALLL 93 (315)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccccCCCCCC--CCHHHHHHHHHHh-----cCEeEeeeeeeccCccCHHHHHHHHHHH
Confidence 35555555555567999999866555555421 2334566667653 257888653 344444444334
Q ss_pred HHHHhCCCCCCeEEEccCCcCHH-HHHHhCCC
Q 019874 296 AEVLRHPCVYSFLHVPVQSGSDA-VLSVSQKI 326 (334)
Q Consensus 296 ~~l~~~~~g~~~l~igiQSgsd~-vLk~M~R~ 326 (334)
+.|.. .++.+|+=+|... ....++..
T Consensus 94 D~lS~-----GR~~lGvg~G~~~~e~~~~G~~ 120 (315)
T cd01096 94 DQMSK-----GRFILGFSDCLYDKDMRFFGRP 120 (315)
T ss_pred HHHcC-----CCeEEEeeCCCCHHHHHHhCCC
Confidence 44321 3678888777643 34455443
No 337
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=20.33 E-value=3.3e+02 Score=22.86 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=29.2
Q ss_pred EEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEE
Q 019874 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (334)
Q Consensus 62 ~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv 130 (334)
++++.|.+......| +...|. ++++-.+|++=-=++.++ +++.+.++++.++ +|||+
T Consensus 30 ~~vs~Gn~~dv~~~d-~l~~~~--------~D~~t~~I~ly~E~~~d~--~~f~~~~~~a~~~-KPVv~ 86 (138)
T PF13607_consen 30 YVVSVGNEADVDFAD-LLEYLA--------EDPDTRVIVLYLEGIGDG--RRFLEAARRAARR-KPVVV 86 (138)
T ss_dssp EEEE-TT-SSS-HHH-HHHHHC--------T-SS--EEEEEES--S-H--HHHHHHHHHHCCC-S-EEE
T ss_pred EEEEeCccccCCHHH-HHHHHh--------cCCCCCEEEEEccCCCCH--HHHHHHHHHHhcC-CCEEE
Confidence 678999766443333 334442 234567777644455543 5788888888777 78774
No 338
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=20.18 E-value=2.9e+02 Score=25.90 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=32.5
Q ss_pred EEEEeecccccch---HHHHHHHHHHHhcC-CCCEEEEccccCCChh-hhc--cCcc-EEEcCCChHHHHHHHHH
Q 019874 98 IWLINTCTVKSPS---QSAMDTLIAKCKSA-KKPLVVAGCVPQGSRD-LKE--LEGV-SIVGVQQIDRVVEVVEE 164 (334)
Q Consensus 98 lviiNTCtv~~~a---~~~~~~~i~~~k~~-~~~VVv~GC~a~~~~~-~~~--~~~d-~vvG~~e~~~i~e~l~~ 164 (334)
++++...++|... ...+.+.++++|+. +.||+|| ...+ .|+ .+. ..+| +|||. .+.+.+++
T Consensus 167 iY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vG-FGI~-~~e~~~~~~~~aDGvIVGS----a~v~~i~~ 235 (259)
T PF00290_consen 167 IYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVG-FGIS-TPEQAKKLAAGADGVIVGS----AFVKIIEE 235 (259)
T ss_dssp EEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEE-SSS--SHHHHHHHHTTSSEEEESH----HHHHHHHH
T ss_pred EEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEe-cCCC-CHHHHHHHHccCCEEEECH----HHHHHHHH
Confidence 4445566665532 34566677777766 4677775 3232 233 222 3578 78884 45555543
No 339
>TIGR00035 asp_race aspartate racemase.
Probab=20.15 E-value=63 Score=29.29 Aligned_cols=72 Identities=10% Similarity=0.147 Sum_probs=43.2
Q ss_pred CceEEEE-eeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeeccc---c----cchHHHHHHHHHHHhcCCCCEE
Q 019874 58 TETIYMK-TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV---K----SPSQSAMDTLIAKCKSAKKPLV 129 (334)
Q Consensus 58 ~~~~~i~-t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv---~----~~a~~~~~~~i~~~k~~~~~VV 129 (334)
.++|.+. |-| ...+......|++.|++++. +.+...=.|..+-+ . ..+.+.+.+.++++.++|.-.|
T Consensus 117 ~~~VgvLaT~~----T~~s~~y~~~l~~~g~~v~~-p~~~~~~~i~~~i~~~~~~g~~~~~~~~l~~~~~~l~~~gad~i 191 (229)
T TIGR00035 117 VKKAGLLGTKG----TMKDGVYEREMKKHGIEIVT-PDKEEQEAIMSGIYDEVKAGNIELGRELLLKIAKELEERGAEGI 191 (229)
T ss_pred CCEEEEEecHH----HHHhHHHHHHHHHCCCEEEC-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEE
Confidence 4566666 443 56677788999999998774 33221111122111 1 2344556677777777788888
Q ss_pred EEccc
Q 019874 130 VAGCV 134 (334)
Q Consensus 130 v~GC~ 134 (334)
+-||-
T Consensus 192 ILgCT 196 (229)
T TIGR00035 192 ILGCT 196 (229)
T ss_pred EEeCc
Confidence 88983
Done!