Query 019874
Match_columns 334
No_of_seqs 334 out of 1902
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 08:23:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgq_A Protein TM_1862; alpha- 99.9 1.2E-27 4.1E-32 226.5 11.5 137 191-332 3-141 (304)
2 1olt_A Oxygen-independent copr 99.5 2.1E-14 7.3E-19 142.8 6.6 133 191-332 52-191 (457)
3 3t7v_A Methylornithine synthas 99.3 1.5E-12 5.1E-17 124.7 8.2 128 193-332 62-190 (350)
4 3iix_A Biotin synthetase, puta 99.3 1.9E-11 6.5E-16 116.4 11.0 126 192-332 53-180 (348)
5 1r30_A Biotin synthase; SAM ra 99.2 7.4E-11 2.5E-15 113.8 11.5 125 193-332 66-196 (369)
6 1tv8_A MOAA, molybdenum cofact 99.1 4.2E-10 1.4E-14 107.1 12.8 127 192-332 14-148 (340)
7 3c8f_A Pyruvate formate-lyase 98.8 7.8E-09 2.7E-13 92.4 9.4 115 196-325 23-143 (245)
8 2yx0_A Radical SAM enzyme; pre 98.7 6E-08 2E-12 92.3 11.7 116 196-326 74-216 (342)
9 2a5h_A L-lysine 2,3-aminomutas 98.6 2.7E-07 9.3E-12 90.5 11.7 117 189-317 112-234 (416)
10 2z2u_A UPF0026 protein MJ0257; 98.4 7.7E-07 2.6E-11 83.2 8.2 114 193-326 52-197 (311)
11 3rfa_A Ribosomal RNA large sub 97.9 2.6E-05 8.8E-10 76.2 9.1 124 191-331 114-256 (404)
12 2yxb_A Coenzyme B12-dependent 97.1 0.0064 2.2E-07 51.6 11.7 107 58-166 18-143 (161)
13 1ccw_A Protein (glutamate muta 95.3 0.089 3E-06 43.1 9.2 94 59-154 4-121 (137)
14 1req_A Methylmalonyl-COA mutas 94.7 0.15 5.2E-06 53.0 10.8 95 58-154 596-708 (727)
15 4fhd_A Spore photoproduct lyas 94.7 0.034 1.2E-06 53.4 5.6 74 195-268 110-190 (368)
16 2xij_A Methylmalonyl-COA mutas 94.4 0.26 8.9E-06 51.4 11.6 105 58-164 604-727 (762)
17 2i2x_B MTAC, methyltransferase 93.4 0.75 2.6E-05 41.5 11.6 104 58-167 123-243 (258)
18 1y80_A Predicted cobalamin bin 93.1 0.39 1.3E-05 41.8 9.0 89 58-150 88-195 (210)
19 1xrs_B D-lysine 5,6-aminomutas 92.7 0.59 2E-05 42.6 9.8 94 58-154 120-243 (262)
20 3kp1_A D-ornithine aminomutase 89.6 0.77 2.6E-05 47.0 7.8 73 79-154 627-720 (763)
21 1req_B Methylmalonyl-COA mutas 87.9 0.66 2.3E-05 47.5 6.1 101 58-164 509-628 (637)
22 3ezx_A MMCP 1, monomethylamine 85.6 2.8 9.4E-05 36.8 8.2 87 58-148 92-199 (215)
23 3bul_A Methionine synthase; tr 83.1 3.7 0.00013 41.6 8.8 77 58-136 98-190 (579)
24 1eiw_A Hypothetical protein MT 82.6 15 0.0005 28.8 10.4 99 63-166 8-108 (111)
25 2h1q_A Hypothetical protein; Z 74.4 2.8 9.6E-05 38.3 4.3 65 94-162 185-251 (270)
26 3l5o_A Uncharacterized protein 67.8 5.1 0.00018 36.5 4.5 54 94-151 185-238 (270)
27 3i9v_6 NADH-quinone oxidoreduc 59.5 2.6 8.8E-05 36.3 0.8 74 59-136 34-114 (181)
28 3npg_A Uncharacterized DUF364 58.7 8.1 0.00028 34.7 4.0 65 95-163 164-231 (249)
29 3eod_A Protein HNR; response r 52.6 65 0.0022 23.8 8.0 103 59-169 8-127 (130)
30 2qxy_A Response regulator; reg 50.6 75 0.0026 23.9 8.2 100 59-169 5-122 (142)
31 3lpe_B DNA-directed RNA polyme 50.5 4.5 0.00015 28.3 0.7 29 195-224 9-37 (59)
32 1jeo_A MJ1247, hypothetical pr 50.3 51 0.0017 26.8 7.5 70 59-133 41-118 (180)
33 3lte_A Response regulator; str 48.4 74 0.0025 23.5 7.7 103 59-169 7-126 (132)
34 1m3s_A Hypothetical protein YC 48.0 46 0.0016 27.2 6.9 70 59-133 38-115 (186)
35 2j48_A Two-component sensor ki 46.8 67 0.0023 22.8 7.0 88 71-164 10-114 (119)
36 3tov_A Glycosyl transferase fa 46.5 59 0.002 29.9 8.0 37 96-132 185-224 (349)
37 4gud_A Imidazole glycerol phos 46.1 18 0.00062 30.7 4.1 71 58-135 2-81 (211)
38 3hdv_A Response regulator; PSI 45.7 90 0.0031 23.2 8.1 106 57-170 6-129 (136)
39 4e5v_A Putative THUA-like prot 45.2 1.2E+02 0.0042 27.2 9.8 70 59-130 5-91 (281)
40 3sho_A Transcriptional regulat 43.6 76 0.0026 25.8 7.6 69 62-133 41-123 (187)
41 4dgh_A Sulfate permease family 43.6 1.1E+02 0.0037 23.5 8.7 72 60-138 20-94 (130)
42 4f54_A Uncharacterized protein 43.0 19 0.00067 31.1 3.7 36 72-108 55-94 (197)
43 3kto_A Response regulator rece 41.3 96 0.0033 23.2 7.4 104 59-168 7-126 (136)
44 2kln_A Probable sulphate-trans 40.8 91 0.0031 23.9 7.3 75 60-137 15-92 (130)
45 3snk_A Response regulator CHEY 40.7 79 0.0027 23.6 6.8 102 58-167 14-132 (135)
46 2a20_A Regulating synaptic mem 40.5 6.5 0.00022 27.4 0.2 17 197-213 19-35 (62)
47 2fz5_A Flavodoxin; alpha/beta 40.5 21 0.00072 27.5 3.4 60 77-136 19-91 (137)
48 5nul_A Flavodoxin; electron tr 39.2 24 0.00082 27.5 3.5 62 76-137 17-91 (138)
49 2xhz_A KDSD, YRBH, arabinose 5 37.6 83 0.0029 25.5 6.9 69 59-132 50-131 (183)
50 3f6c_A Positive transcription 37.4 1.2E+02 0.0042 22.3 10.0 96 71-170 10-122 (134)
51 3hpd_A Hydroxyethylthiazole ki 37.0 59 0.002 29.3 6.2 84 70-153 22-121 (265)
52 1vim_A Hypothetical protein AF 37.0 65 0.0022 26.9 6.2 69 59-132 48-124 (200)
53 3f6r_A Flavodoxin; FMN binding 35.8 66 0.0023 25.1 5.7 57 78-134 22-94 (148)
54 3hzh_A Chemotaxis response reg 35.4 1.5E+02 0.0052 22.8 8.9 98 58-165 36-154 (157)
55 2pju_A Propionate catabolism o 35.3 92 0.0032 27.2 7.0 86 59-166 107-192 (225)
56 1x92_A APC5045, phosphoheptose 34.7 51 0.0018 27.3 5.1 70 59-133 46-149 (199)
57 3rr1_A GALD, putative D-galact 34.0 1.8E+02 0.0062 27.5 9.4 101 221-327 124-228 (405)
58 2yva_A DNAA initiator-associat 33.3 87 0.003 25.7 6.4 70 59-133 42-145 (196)
59 3jte_A Response regulator rece 32.8 1.5E+02 0.0052 22.0 8.5 92 70-168 11-123 (143)
60 3i42_A Response regulator rece 32.6 1.4E+02 0.0049 21.7 8.5 92 71-166 12-120 (127)
61 3umo_A 6-phosphofructokinase i 32.5 1.4E+02 0.0048 26.3 8.1 66 58-131 101-166 (309)
62 4dad_A Putative pilus assembly 31.9 1.6E+02 0.0055 22.0 8.1 104 58-169 20-142 (146)
63 3hv2_A Response regulator/HD d 31.5 1.7E+02 0.0059 22.2 9.2 104 55-167 11-132 (153)
64 1jvn_A Glutamine, bifunctional 31.1 3.9E+02 0.013 26.3 12.3 191 70-278 277-500 (555)
65 3gt7_A Sensor protein; structu 31.0 1.8E+02 0.0061 22.2 8.7 102 59-168 8-127 (154)
66 3ewb_X 2-isopropylmalate synth 30.9 99 0.0034 28.0 6.7 82 221-313 147-231 (293)
67 3lua_A Response regulator rece 30.8 1.6E+02 0.0056 21.8 9.3 106 58-170 4-129 (140)
68 3dzv_A 4-methyl-5-(beta-hydrox 30.3 65 0.0022 29.0 5.3 62 70-131 24-94 (273)
69 3sbf_A Mandelate racemase / mu 30.3 2E+02 0.0068 27.0 9.0 99 221-327 132-251 (401)
70 3f6p_A Transcriptional regulat 30.1 1.6E+02 0.0054 21.4 8.8 92 71-166 11-117 (120)
71 1f4p_A Flavodoxin; electron tr 29.8 58 0.002 25.4 4.4 62 75-136 14-95 (147)
72 4dgf_A Sulfate transporter sul 29.5 81 0.0028 24.5 5.2 71 60-137 23-96 (135)
73 2rdm_A Response regulator rece 29.1 1.7E+02 0.0057 21.3 10.5 96 71-169 14-124 (132)
74 3cg0_A Response regulator rece 28.7 1.8E+02 0.006 21.5 7.0 101 58-167 9-127 (140)
75 2qr3_A Two-component system re 28.5 1.8E+02 0.006 21.4 7.7 96 71-169 12-127 (140)
76 3ny7_A YCHM protein, sulfate t 28.3 1.8E+02 0.0061 22.0 7.0 70 60-137 17-89 (118)
77 3rht_A (gatase1)-like protein; 28.1 79 0.0027 28.2 5.4 76 58-136 4-91 (259)
78 3grc_A Sensor protein, kinase; 27.4 1.4E+02 0.0046 22.2 6.1 102 59-168 7-127 (140)
79 2q5c_A NTRC family transcripti 27.2 66 0.0023 27.2 4.5 86 59-165 95-180 (196)
80 3ozy_A Putative mandelate race 26.2 3.5E+02 0.012 25.1 9.9 96 220-327 149-246 (389)
81 3etn_A Putative phosphosugar i 25.6 1.4E+02 0.0047 25.4 6.4 70 58-132 59-143 (220)
82 1h7n_A 5-aminolaevulinic acid 25.6 1.4E+02 0.0047 27.9 6.6 76 192-271 41-124 (342)
83 3crn_A Response regulator rece 25.5 2E+02 0.0069 21.1 7.7 92 71-166 12-119 (132)
84 3hly_A Flavodoxin-like domain; 25.2 2.2E+02 0.0076 22.7 7.3 59 76-136 19-93 (161)
85 3fst_A 5,10-methylenetetrahydr 24.8 3.8E+02 0.013 24.3 9.5 50 219-268 92-141 (304)
86 2w6r_A Imidazole glycerol phos 24.5 3.1E+02 0.01 23.6 8.7 91 221-328 30-124 (266)
87 3ie7_A LIN2199 protein; phosph 24.4 1.9E+02 0.0066 25.5 7.5 63 62-131 107-169 (320)
88 1ka9_H Imidazole glycerol phos 24.1 1.7E+02 0.0058 24.2 6.6 72 59-135 3-84 (200)
89 2hna_A Protein MIOC, flavodoxi 23.7 58 0.002 25.6 3.3 61 75-135 19-92 (147)
90 1yg6_A ATP-dependent CLP prote 23.2 99 0.0034 26.0 4.9 70 63-136 28-97 (193)
91 2cw6_A Hydroxymethylglutaryl-C 23.1 3.9E+02 0.013 23.7 9.3 81 221-313 153-234 (298)
92 3obk_A Delta-aminolevulinic ac 23.1 87 0.003 29.4 4.7 76 191-271 45-127 (356)
93 3fxa_A SIS domain protein; str 22.8 1.2E+02 0.0041 25.0 5.4 68 60-132 47-127 (201)
94 1vhc_A Putative KHG/KDPG aldol 22.8 3E+02 0.01 23.6 8.1 85 219-325 24-108 (224)
95 3oq0_A DBF4, protein DNA52; DD 22.8 1.1E+02 0.0036 25.3 4.7 73 57-129 23-103 (151)
96 2ark_A Flavodoxin; FMN, struct 22.8 52 0.0018 27.2 2.9 73 58-133 4-96 (188)
97 2ftp_A Hydroxymethylglutaryl-C 22.4 3.2E+02 0.011 24.4 8.5 81 221-313 156-237 (302)
98 4e7p_A Response regulator; DNA 22.4 2.5E+02 0.0086 21.1 9.0 105 58-170 20-142 (150)
99 2f02_A Tagatose-6-phosphate ki 22.3 1.7E+02 0.0059 26.0 6.7 65 59-130 100-164 (323)
100 3fni_A Putative diflavin flavo 22.0 2.6E+02 0.009 22.2 7.2 58 76-135 23-97 (159)
101 3ble_A Citramalate synthase fr 21.8 3.7E+02 0.013 24.5 9.0 82 221-313 166-247 (337)
102 2pv7_A T-protein [includes: ch 21.8 1.1E+02 0.0039 27.2 5.3 40 57-101 20-71 (298)
103 2jg1_A Tagatose-6-phosphate ki 21.7 2.1E+02 0.0073 25.5 7.2 65 60-131 119-183 (330)
104 1f07_A Coenzyme F420-dependent 21.4 4.1E+02 0.014 23.5 9.1 90 221-327 11-107 (321)
105 2pjk_A 178AA long hypothetical 21.4 3.5E+02 0.012 22.3 9.2 68 56-135 13-92 (178)
106 4e38_A Keto-hydroxyglutarate-a 21.3 3.9E+02 0.013 23.3 8.5 85 219-325 41-125 (232)
107 3cqd_A 6-phosphofructokinase i 21.2 3.8E+02 0.013 23.3 8.8 64 59-130 102-165 (309)
108 3tji_A Mandelate racemase/muco 20.9 2.3E+02 0.0079 26.9 7.5 97 221-325 153-270 (422)
109 1w5q_A Delta-aminolevulinic ac 20.7 1.8E+02 0.006 27.1 6.2 76 192-271 38-120 (337)
110 3a10_A Response regulator; pho 20.4 2.3E+02 0.008 19.9 9.9 89 71-164 10-113 (116)
111 1ykg_A SIR-FP, sulfite reducta 20.4 98 0.0033 25.0 4.2 61 76-136 28-104 (167)
112 3llo_A Prestin; STAS domain, c 20.1 2.2E+02 0.0076 21.9 6.2 76 59-138 29-109 (143)
No 1
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=99.94 E-value=1.2e-27 Score=226.50 Aligned_cols=137 Identities=29% Similarity=0.539 Sum_probs=110.4
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCC--CCCHHHHHHHHHH
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVA 268 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~--~~~l~~Ll~~l~~ 268 (334)
+..++|++++|||++|+||.+|..+|+.|++|+++|++|++.+.+.|+++|+|+|+|+++||.+. ...+.+|++.|.+
T Consensus 3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~ 82 (304)
T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNS 82 (304)
T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHh
Confidence 35689999999999999999999999999999999999999999999999999999999998653 3579999999975
Q ss_pred hCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 269 ~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
++ +..|+|+++++|..+++++ +..|++.+++|++++||+||+|+++|+.|+|+++.+++
T Consensus 83 -~~--gi~~ir~~~~~p~~l~~e~--l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~ 141 (304)
T 2qgq_A 83 -LN--GEFWIRVMYLHPDHLTEEI--ISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEEL 141 (304)
T ss_dssp -SS--SSCEEEECCCCGGGCCHHH--HHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHH
T ss_pred -cC--CCcEEEEeeeecccCCHHH--HHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHH
Confidence 55 6789999889999999877 78888765559999999999999999999999998764
No 2
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.48 E-value=2.1e-14 Score=142.78 Aligned_cols=133 Identities=11% Similarity=0.148 Sum_probs=100.2
Q ss_pred ceeeeeeccCCCCCCCccccccccC--C-ccccCCHHHHHHHHHHHHHC----CCcEEEEeeccCCCCCCCCCCCHHHHH
Q 019874 191 KFVEILPINVGCLGACTYCKTKHAR--G-HLGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILL 263 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~r--G-~~rsr~~e~Iv~Ei~~l~~~----G~kei~l~~~d~~~yg~d~~~~l~~Ll 263 (334)
+...||.|. +|+++|+||..+... + ..+.++++.|++|++.+.+. ++..|.|.|.+.+... ...+.+|+
T Consensus 52 ~~~lYihIp-fC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGtpt~l~---~~~l~~ll 127 (457)
T 1olt_A 52 PLSLYVHIP-FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLN---KAQISRLM 127 (457)
T ss_dssp CEEEEEEEC-EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSC---HHHHHHHH
T ss_pred ceEEEEEcC-CCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcccCC---HHHHHHHH
Confidence 456788887 699999999987543 2 34577899999999987654 3567777765443222 13688999
Q ss_pred HHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 264 ~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+.+.+.++.....++++ .++|..++++. |..|++. |+.+|+||+||+++++|+.|+|+++.+++
T Consensus 128 ~~i~~~~~~~~~~eiti-e~~p~~l~~e~--l~~L~~~--G~~rislGvQS~~~~~l~~i~R~~~~~~~ 191 (457)
T 1olt_A 128 KLLRENFQFNADAEISI-EVDPREIELDV--LDHLRAE--GFNRLSMGVQDFNKEVQRLVNREQDEEFI 191 (457)
T ss_dssp HHHHHHSCEEEEEEEEE-EECSSSCCTHH--HHHHHHT--TCCEEEEEEECCCHHHHHHHTCCCCHHHH
T ss_pred HHHHHhCCCCCCcEEEE-EEccCcCCHHH--HHHHHHc--CCCEEEEeeccCCHHHHHHhCCCCCHHHH
Confidence 99876542112356776 68999998876 7777764 79999999999999999999999998764
No 3
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.34 E-value=1.5e-12 Score=124.72 Aligned_cols=128 Identities=15% Similarity=0.154 Sum_probs=96.0
Q ss_pred eeeeeccCCCCCCCccccccccCCcc-ccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCC
Q 019874 193 VEILPINVGCLGACTYCKTKHARGHL-GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271 (334)
Q Consensus 193 ~~~v~isrGC~~~CsfC~ip~~rG~~-rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~ 271 (334)
.+.|.+++||+++|.||..+...+.. ..+++++|+++++.+.+.|+++|.|+|.+...|..+ ...+.++++.+.+..
T Consensus 62 ~~~i~~t~~C~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~-~~~~~~l~~~ik~~~- 139 (350)
T 3t7v_A 62 NCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYED-PNRFVELVQIVKEEL- 139 (350)
T ss_dssp EEEEEEECCCCCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTTSCCSEEEEEECCCHHHHHS-THHHHHHHHHHHHHH-
T ss_pred EEeeecCCCcCCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHHCCCCEEEEeeCCCCccccC-HHHHHHHHHHHHhhc-
Confidence 45788999999999999987654322 237999999999999989999999987553223111 135788888887543
Q ss_pred CCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 272 ~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+. .+ .++|..++++. +..|++ +|+..+.+|+||+++++++.|+++++.+++
T Consensus 140 --~i-~i---~~s~g~~~~e~--l~~L~~--aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~ 190 (350)
T 3t7v_A 140 --GL-PI---MISPGLMDNAT--LLKARE--KGANFLALYQETYDTELYRKLRVGQSFDGR 190 (350)
T ss_dssp --CS-CE---EEECSSCCHHH--HHHHHH--TTEEEEECCCBCSCHHHHHHHSTTCCHHHH
T ss_pred --Cc-eE---EEeCCCCCHHH--HHHHHH--cCCCEEEEeeecCCHHHHHHhCCCCCHHHH
Confidence 22 22 34566677755 777776 479999999999999999999999887653
No 4
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.26 E-value=1.9e-11 Score=116.43 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=94.6
Q ss_pred eeeeeeccCCCCCCCccccccccCCcc-c-cCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHh
Q 019874 192 FVEILPINVGCLGACTYCKTKHARGHL-G-SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269 (334)
Q Consensus 192 ~~~~v~isrGC~~~CsfC~ip~~rG~~-r-sr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~ 269 (334)
+.+.|.+++||+++|.||..+...+.. + ..++++|+++++.+.+.|+++|.|+|.+...+.. ..+.++++.+.+.
T Consensus 53 ~~~~i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~---~~~~~li~~i~~~ 129 (348)
T 3iix_A 53 IRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYXMP---DVISDIVKEIKKM 129 (348)
T ss_dssp EEEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHTTCSEEEEEESCCGGGTT---HHHHHHHHHHHTT
T ss_pred EEEEeEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCccH---HHHHHHHHHHHhc
Confidence 346788999999999999987665532 2 3699999999999999999999999865222321 3577888888642
Q ss_pred CCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 270 i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
+ +++. +++..++++. +..|++ +|+..+.+++||.++++++.++++.+.+++
T Consensus 130 ----~---~~i~-~s~g~l~~e~--l~~L~~--ag~~~v~i~let~~~~~~~~i~~~~~~~~~ 180 (348)
T 3iix_A 130 ----G---VAVT-LSLGEWPREY--YEKWKE--AGADRYLLRHETANPVLHRKLRPDTSFENR 180 (348)
T ss_dssp ----S---CEEE-EECCCCCHHH--HHHHHH--HTCCEEECCCBCSCHHHHHHHSTTSCHHHH
T ss_pred ----C---ceEE-EecCCCCHHH--HHHHHH--hCCCEEeeeeeeCCHHHHHHhCCCcCHHHH
Confidence 2 3332 4555566655 677765 478999999999999999999998876543
No 5
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.19 E-value=7.4e-11 Score=113.82 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=92.3
Q ss_pred eeeeec-cCCCCCCCccccccccC--C--ccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC-CCHHHHHHHH
Q 019874 193 VEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAI 266 (334)
Q Consensus 193 ~~~v~i-srGC~~~CsfC~ip~~r--G--~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~-~~l~~Ll~~l 266 (334)
...|.+ ++||+++|.||..+... + +.+.+++++|+++++.+.+.|+++|.|.|... ++.... ..+.++++.+
T Consensus 66 ~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~~~gg~~--~p~~~~~~~l~~ll~~i 143 (369)
T 1r30_A 66 STLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWK--NPHERDMPYLEQMVQGV 143 (369)
T ss_dssp EEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCS--SCCTTTHHHHHHHHHHH
T ss_pred EEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHHcCCcEEEEEeCCC--CCCcCCHHHHHHHHHHH
Confidence 456776 99999999999987642 2 35668999999999999889999999977321 122111 3567788887
Q ss_pred HHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCCCcCcc
Q 019874 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIVPTKSV 332 (334)
Q Consensus 267 ~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~t~e~v 332 (334)
.+. +. .+ . +++..++++. +..|++ .|+.++++++|| ++++++.|+|+++.+++
T Consensus 144 k~~----g~-~i--~-~t~G~l~~e~--l~~L~~--aGvd~v~i~les-~~e~~~~i~~~~~~~~~ 196 (369)
T 1r30_A 144 KAM----GL-EA--C-MTLGTLSESQ--AQRLAN--AGLDYYNHNLDT-SPEFYGNIITTRTYQER 196 (369)
T ss_dssp HHT----TS-EE--E-EECSSCCHHH--HHHHHH--HCCCEEECCCBS-CHHHHHHHCCSSCHHHH
T ss_pred HHc----CC-eE--E-EecCCCCHHH--HHHHHH--CCCCEEeecCcC-CHHHHHHhCCCCCHHHH
Confidence 652 33 23 2 4566677655 677775 479999999999 99999999998887654
No 6
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.12 E-value=4.2e-10 Score=107.05 Aligned_cols=127 Identities=14% Similarity=0.206 Sum_probs=96.4
Q ss_pred eeeeeeccCCCCCCCcccccccc-------CCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHH
Q 019874 192 FVEILPINVGCLGACTYCKTKHA-------RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLN 264 (334)
Q Consensus 192 ~~~~v~isrGC~~~CsfC~ip~~-------rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~ 264 (334)
.+..|.++.+||++|.||..+.. .++....+.+++.+.++.+.+.|++.|.|+|.+...+ ..+.++++
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGEPll~-----~~l~~li~ 88 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMR-----RDLDVLIA 88 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGS-----TTHHHHHH
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCccch-----hhHHHHHH
Confidence 35578999999999999987652 1234568999999999999989999999998665433 36889999
Q ss_pred HHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCC-CcCcc
Q 019874 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIV-PTKSV 332 (334)
Q Consensus 265 ~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~-t~e~v 332 (334)
.+.+ .+ +...+.+ .+|...+++. +..|++ .++..+.|+++|.++++++.|+++. +.+++
T Consensus 89 ~~~~-~~--~~~~i~i-~TNG~ll~~~---~~~L~~--~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v 148 (340)
T 1tv8_A 89 KLNQ-ID--GIEDIGL-TTNGLLLKKH---GQKLYD--AGLRRINVSLDAIDDTLFQSINNRNIKATTI 148 (340)
T ss_dssp HHTT-CT--TCCEEEE-EECSTTHHHH---HHHHHH--HTCCEEEEECCCSSHHHHHHHHSSCCCHHHH
T ss_pred HHHh-CC--CCCeEEE-EeCccchHHH---HHHHHH--CCCCEEEEecCCCCHHHHHHhhCCCCCHHHH
Confidence 8864 33 3346666 5788776653 455554 3689999999999999999998876 65543
No 7
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=98.85 E-value=7.8e-09 Score=92.42 Aligned_cols=115 Identities=19% Similarity=0.143 Sum_probs=80.7
Q ss_pred eeccCCCCCCCccccccccC--CccccCCHHHHHHHHHHHHHC---CCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhC
Q 019874 196 LPINVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270 (334)
Q Consensus 196 v~isrGC~~~CsfC~ip~~r--G~~rsr~~e~Iv~Ei~~l~~~---G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i 270 (334)
+.++.|||++|.||..+... +..+.+++++++++++.+.+. +...|.|+|.+...+. ..+.++++.+.+ .
T Consensus 23 ~i~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~l~~----~~l~~l~~~~~~-~ 97 (245)
T 3c8f_A 23 ITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQA----EFVRDWFRACKK-E 97 (245)
T ss_dssp EEEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGGGGH----HHHHHHHHHHHT-T
T ss_pred EEEeCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCCcCCCH----HHHHHHHHHHHH-c
Confidence 34567999999999987643 345678999999999987653 4789999986655431 125788888764 2
Q ss_pred CCCCCceEEEeecCCCCh-hhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCC
Q 019874 271 PPDGSTMLRIGMTNPPFI-LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325 (334)
Q Consensus 271 ~~~~~~~ir~~~~~p~~i-~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R 325 (334)
+. .+.+ .+|...+ +++. +..+++. +..+.+++||+++++++.+++
T Consensus 98 ---~~-~i~i-~Tng~~~~~~~~--~~~l~~~---~~~v~isld~~~~~~~~~~~~ 143 (245)
T 3c8f_A 98 ---GI-HTCL-DTNGFVRRYDPV--IDELLEV---TDLVMLDLKQMNDEIHQNLVG 143 (245)
T ss_dssp ---TC-CEEE-EECCCCCCCCHH--HHHHHHT---CSEEEEECCCSSHHHHHHHHS
T ss_pred ---CC-cEEE-EeCCCcCcCHHH--HHHHHHh---CCEEEEeCCCCCHHHhhhccC
Confidence 33 4555 3565331 3332 4555542 578999999999999999965
No 8
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=98.73 E-value=6e-08 Score=92.30 Aligned_cols=116 Identities=14% Similarity=0.085 Sum_probs=80.5
Q ss_pred eecc-CCCCCCCccccccccC-----CccccCCHHHHHHHHHHHHH---C---C--------------CcEEEEe-eccC
Q 019874 196 LPIN-VGCLGACTYCKTKHAR-----GHLGSYTVESLVGRVRTVIA---D---G--------------VKEVWLS-SEDT 248 (334)
Q Consensus 196 v~is-rGC~~~CsfC~ip~~r-----G~~rsr~~e~Iv~Ei~~l~~---~---G--------------~kei~l~-~~d~ 248 (334)
+..+ +||+++|.||..+... +..+..++++|++++....+ . | ++.|.|+ |.+.
T Consensus 74 i~~~~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEP 153 (342)
T 2yx0_A 74 MTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEP 153 (342)
T ss_dssp EESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCG
T ss_pred EEeChhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcc
Confidence 3444 7999999999987542 14567899999999877643 1 2 4678886 5444
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCC
Q 019874 249 GAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKI 326 (334)
Q Consensus 249 ~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~ 326 (334)
..+ ..+.++++.+.+ . +. .+.+ ++|... ++. +..|++.+..+..+.+++++.++++++.+++.
T Consensus 154 ll~-----~~l~~ll~~~~~-~---g~-~i~l-~TNG~~--~e~--l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~ 216 (342)
T 2yx0_A 154 MLY-----PYMGDLVEEFHK-R---GF-TTFI-VTNGTI--PER--LEEMIKEDKLPTQLYVSITAPDIETYNSVNIP 216 (342)
T ss_dssp GGS-----TTHHHHHHHHHH-T---TC-EEEE-EECSCC--HHH--HHHHHHTTCCCSEEEEEECCSSHHHHHHHHCB
T ss_pred cch-----hhHHHHHHHHHH-C---CC-cEEE-EcCCCc--HHH--HHHHHhcCCCCCEEEEEccCCCHHHHHHHhCC
Confidence 433 268899999875 3 43 5665 466653 433 56666532247899999999999999999873
No 9
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=98.58 E-value=2.7e-07 Score=90.55 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=85.6
Q ss_pred ccceeeeeeccCCCCCCCccccccccCC-ccccCCHHHHHHHHHHHHH-CCCcEEEEeeccCCCCCCCCCCCHHHHHHHH
Q 019874 189 RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266 (334)
Q Consensus 189 ~~~~~~~v~isrGC~~~CsfC~ip~~rG-~~rsr~~e~Iv~Ei~~l~~-~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l 266 (334)
+.+....+.++.||+.+|.||......+ ..+..+.+++.+.++.+.+ .|+++|.|+|.+...+.. ..|.++++.+
T Consensus 112 ryp~~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltGGEPll~~d---~~L~~il~~l 188 (416)
T 2a5h_A 112 RYPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSD---ETLEYIIAKL 188 (416)
T ss_dssp CSSSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCH---HHHHHHHHHH
T ss_pred cCCCEEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCH---HHHHHHHHHH
Confidence 3455678899999999999998765444 3456889999999998887 699999999866544310 1388899988
Q ss_pred HHhCCCCCCceEEEee----cCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCH
Q 019874 267 VAELPPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317 (334)
Q Consensus 267 ~~~i~~~~~~~ir~~~----~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd 317 (334)
.+ ++ +...+++++ +.|..+++++ +..|++. ..++|++++.++
T Consensus 189 ~~-~~--~v~~i~i~Tng~~~~p~~it~e~--l~~L~~~----~~v~Isl~~~~~ 234 (416)
T 2a5h_A 189 RE-IP--HVEIVRIGSRTPVVLPQRITPEL--VNMLKKY----HPVWLNTHFNHP 234 (416)
T ss_dssp HT-ST--TCCEEEEECSHHHHCGGGCCHHH--HHHHGGG----CSEEEEECCCSG
T ss_pred Hh-cC--CccEEEEEecccccccccCCHHH--HHHHHhc----CcEEEEEecCCH
Confidence 65 55 566788854 2455677766 6666543 678999998775
No 10
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=98.36 E-value=7.7e-07 Score=83.22 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=66.6
Q ss_pred eeeeecc-CCCCCCCccccccccC--C-------ccccCCHHHHHHHHHHHHH------CC---------------CcEE
Q 019874 193 VEILPIN-VGCLGACTYCKTKHAR--G-------HLGSYTVESLVGRVRTVIA------DG---------------VKEV 241 (334)
Q Consensus 193 ~~~v~is-rGC~~~CsfC~ip~~r--G-------~~rsr~~e~Iv~Ei~~l~~------~G---------------~kei 241 (334)
...+.++ .||+++|.||..+... | ..+..++++|++++....+ .| ++.|
T Consensus 52 ~l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i 131 (311)
T 2z2u_A 52 CIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHV 131 (311)
T ss_dssp EEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEE
T ss_pred eEEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEE
Confidence 3467788 7999999999977422 1 2467899999988765532 12 4567
Q ss_pred EEe-eccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHH
Q 019874 242 WLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320 (334)
Q Consensus 242 ~l~-~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vL 320 (334)
.|+ |.+...| ..+.++++.+.+ . +. .+.+ .+|... ++. +..| +...+.+++++.++++.
T Consensus 132 ~~s~gGEPll~-----~~l~~li~~~~~-~---g~-~~~l-~TNG~~--~~~--l~~L-----~~~~v~isld~~~~~~~ 191 (311)
T 2z2u_A 132 AISLSGEPTLY-----PYLDELIKIFHK-N---GF-TTFV-VSNGIL--TDV--IEKI-----EPTQLYISLDAYDLDSY 191 (311)
T ss_dssp EECSSSCGGGS-----TTHHHHHHHHHH-T---TC-EEEE-EECSCC--HHH--HHHC-----CCSEEEEECCCSSTTTC
T ss_pred EEeCCcCccch-----hhHHHHHHHHHH-C---CC-cEEE-ECCCCC--HHH--HHhC-----CCCEEEEEeecCCHHHH
Confidence 886 4333333 368899998875 2 43 5555 456543 222 4433 35799999999999999
Q ss_pred HHhCCC
Q 019874 321 SVSQKI 326 (334)
Q Consensus 321 k~M~R~ 326 (334)
+.++++
T Consensus 192 ~~i~~~ 197 (311)
T 2z2u_A 192 RRICGG 197 (311)
T ss_dssp ----CC
T ss_pred HHHhCC
Confidence 998876
No 11
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=97.92 E-value=2.6e-05 Score=76.16 Aligned_cols=124 Identities=15% Similarity=0.277 Sum_probs=81.9
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHH----------CCCcEEEEeeccCCCCCCCC-C-CC
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----------DGVKEVWLSSEDTGAYGRDI-G-VN 258 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~----------~G~kei~l~~~d~~~yg~d~-~-~~ 258 (334)
.....|.++.||+.+|.||..+.. |..|..++++|++++..... .++..|+|+| +|..+ . ..
T Consensus 114 r~tlcVSsq~GCnl~C~fC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~G-----gGEPLln~d~ 187 (404)
T 3rfa_A 114 RATLCVSSQVGCALECKFCSTAQQ-GFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMG-----MGEPLLNLNN 187 (404)
T ss_dssp CEEEECCCEEECSSCCTTCGGGTT-CEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECS-----SSCGGGCHHH
T ss_pred CceEEEEeCCCCCCcCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeC-----CCCcccCHHH
Confidence 456788889999999999998753 55688999999999987643 2478899984 12221 1 24
Q ss_pred HHHHHHHHHHhCCCCCC----ceEEEeecCCCChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhC---CCCCcCc
Q 019874 259 LPILLNAIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQ---KIVPTKS 331 (334)
Q Consensus 259 l~~Ll~~l~~~i~~~~~----~~ir~~~~~p~~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~---R~~t~e~ 331 (334)
+.++++.+.+. . |. ..+.++ ++-. + +.+ ..++.. +-..|.+.+.+.+++..+.+. ++++.++
T Consensus 188 v~~~i~~lk~~-~--Gl~~s~r~itls-TnG~-~-p~i---~~L~~~--~d~~LaiSLka~d~e~~~~i~pv~~~~~le~ 256 (404)
T 3rfa_A 188 VVPAMEIMLDD-F--GFGLSKRRVTLS-TSGV-V-PAL---DKLGDM--IDVALAISLHAPNDEIRDEIVPINKKYNIET 256 (404)
T ss_dssp HHHHHHHHHST-T--TTCCCGGGEEEE-ESCC-H-HHH---HHHHHH--CCCEEEEECCCSSHHHHHHHSGGGGTSCHHH
T ss_pred HHHHHHHHHhh-c--CcCcCCCceEEE-CCCc-H-HHH---HHHHHh--hcceEEecccCCCHHHHHHhcCCccCCCHHH
Confidence 66777777542 1 33 256653 4432 2 333 334432 335688999999999877664 5666554
No 12
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=97.06 E-value=0.0064 Score=51.59 Aligned_cols=107 Identities=18% Similarity=0.275 Sum_probs=72.5
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~ 123 (334)
..+|-+-|.|=-....=...++..|+..||+++.. ..++|+|++ |++.+.. ...+.++++.+++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~l-S~~~~~~-~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGV-SILNGAH-LHLMKRLMAKLRE 95 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEE-EESSSCH-HHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEE-Eeechhh-HHHHHHHHHHHHh
Confidence 46788887776665666788999999999999753 257999998 4454433 3456777777776
Q ss_pred CC---CCEEEEccccCCChh-hhccCccEEEcCCC-hHHHHHHHHHHh
Q 019874 124 AK---KPLVVAGCVPQGSRD-LKELEGVSIVGVQQ-IDRVVEVVEETL 166 (334)
Q Consensus 124 ~~---~~VVv~GC~a~~~~~-~~~~~~d~vvG~~e-~~~i~e~l~~~~ 166 (334)
.+ .+|++||..++...+ .....+|.+++++. ...+.+++.+.+
T Consensus 96 ~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~ 143 (161)
T 2yxb_A 96 LGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLA 143 (161)
T ss_dssp TTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHH
Confidence 54 689999976643332 33556787776554 345566665543
No 13
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=95.35 E-value=0.089 Score=43.10 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=61.7
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~ 124 (334)
.++-+-|.|=-....=...++..|+..||++++. ..+||+|++ |++.+.. ...+.+.++++++.
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~l-S~~~~~~-~~~~~~~i~~l~~~ 81 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILV-SSLYGQG-EIDCKGLRQKCDEA 81 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEE-EECSSTH-HHHHTTHHHHHHHT
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEE-EecCcCc-HHHHHHHHHHHHhc
Confidence 4566666665555555678889999999998742 357999988 4455433 34566677777665
Q ss_pred C---CCEEEEcccc---CCChh----hhccCccEEEcCCC
Q 019874 125 K---KPLVVAGCVP---QGSRD----LKELEGVSIVGVQQ 154 (334)
Q Consensus 125 ~---~~VVv~GC~a---~~~~~----~~~~~~d~vvG~~e 154 (334)
+ .+|++||-.. +.+++ ..+..+|.+++.+.
T Consensus 82 g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~ 121 (137)
T 1ccw_A 82 GLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGT 121 (137)
T ss_dssp TCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTC
T ss_pred CCCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCC
Confidence 4 5799999642 22222 23556788887664
No 14
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=94.74 E-value=0.15 Score=52.98 Aligned_cols=95 Identities=13% Similarity=0.228 Sum_probs=68.3
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~ 123 (334)
..+|.+-|.|--....=...++..|+..||++++. ..+||+|+|++ +.+.. ...+..+++.+++
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSs-l~~~~-~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSS-LAGGH-LTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEE-CSSCH-HHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcCCCEEEEee-ecHhH-HHHHHHHHHHHHh
Confidence 46899999998877777788899999999999754 25899999954 32222 3446677788877
Q ss_pred CCC---CEEEEccccCCChh-hhccCccEEEcCCC
Q 019874 124 AKK---PLVVAGCVPQGSRD-LKELEGVSIVGVQQ 154 (334)
Q Consensus 124 ~~~---~VVv~GC~a~~~~~-~~~~~~d~vvG~~e 154 (334)
.|. +|++||-.+....+ ..+..+|.+++++.
T Consensus 674 ~G~~~i~VivGG~~p~~d~~~l~~~GaD~~f~~gt 708 (727)
T 1req_A 674 LGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGT 708 (727)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHTTEEEEECTTC
T ss_pred cCCCCCEEEEcCCCccccHHHHHhCCCCEEEcCCc
Confidence 664 79999955544333 34567888888654
No 15
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=94.71 E-value=0.034 Score=53.35 Aligned_cols=74 Identities=19% Similarity=0.399 Sum_probs=48.5
Q ss_pred eeeccCCCCCCCccccccccCCc---c-ccCCHHHHHHHHHHHH-HCCCc-EEEEeeccCCCCCCCCCC-CHHHHHHHHH
Q 019874 195 ILPINVGCLGACTYCKTKHARGH---L-GSYTVESLVGRVRTVI-ADGVK-EVWLSSEDTGAYGRDIGV-NLPILLNAIV 267 (334)
Q Consensus 195 ~v~isrGC~~~CsfC~ip~~rG~---~-rsr~~e~Iv~Ei~~l~-~~G~k-ei~l~~~d~~~yg~d~~~-~l~~Ll~~l~ 267 (334)
.+...+||++.|.||......|. . ...+.++++++++... +.+.+ ..+-+|.++-.|..+... .+.++|+-+.
T Consensus 110 ~ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp~E~~~~ltr~~le~l~ 189 (368)
T 4fhd_A 110 AIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFIG 189 (368)
T ss_dssp ECCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHHHHTTTCHHHHHHHHHH
T ss_pred eeCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcchhhHHHhHHHHHHHHHH
Confidence 47789999999999998755542 2 3578999999987644 33443 455667766655322222 2446777665
Q ss_pred H
Q 019874 268 A 268 (334)
Q Consensus 268 ~ 268 (334)
+
T Consensus 190 ~ 190 (368)
T 4fhd_A 190 A 190 (368)
T ss_dssp H
T ss_pred h
Confidence 4
No 16
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=94.37 E-value=0.26 Score=51.44 Aligned_cols=105 Identities=13% Similarity=0.251 Sum_probs=71.3
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~ 123 (334)
..+|.+-|.|--....=...++..|+..||++++. ..+||+|+|++ ..+. ....+..+++.+++
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSs-l~~~-~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGVST-LAAG-HKTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEE-CSSC-HHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcCCCEEEEee-ecHH-HHHHHHHHHHHHHh
Confidence 46899999998776666788899999999999854 25899999944 2222 23446677788877
Q ss_pred CCC---CEEEEccccCCChh-hhccCccEEEcCC-ChHHHHHHHHH
Q 019874 124 AKK---PLVVAGCVPQGSRD-LKELEGVSIVGVQ-QIDRVVEVVEE 164 (334)
Q Consensus 124 ~~~---~VVv~GC~a~~~~~-~~~~~~d~vvG~~-e~~~i~e~l~~ 164 (334)
.|. +|++||-.+....+ ..+..+|.+++++ +...+.+.+.+
T Consensus 682 ~G~~dv~VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~ 727 (762)
T 2xij_A 682 LGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLD 727 (762)
T ss_dssp TTCTTSEEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHH
Confidence 764 78999954543332 3455788888754 33344444433
No 17
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=93.38 E-value=0.75 Score=41.52 Aligned_cols=104 Identities=12% Similarity=0.099 Sum_probs=68.5
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~ 123 (334)
..+|-+-|.+=-...-=...++..|+..||++++- ..++|+|++ |++.+... ..+.+.++++++
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~l-S~l~~~~~-~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTG-TALMTTTM-YAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEE-ECCCTTTT-THHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-EeeccCCH-HHHHHHHHHHHh
Confidence 45677766655555555778889999999998532 247999998 44544332 357778888877
Q ss_pred CC--CCEEEEccccCCChhh-hccCccEEEcCCChHHHHHHHHHHhc
Q 019874 124 AK--KPLVVAGCVPQGSRDL-KELEGVSIVGVQQIDRVVEVVEETLK 167 (334)
Q Consensus 124 ~~--~~VVv~GC~a~~~~~~-~~~~~d~vvG~~e~~~i~e~l~~~~~ 167 (334)
.+ .+|+|||..++ ++. ..+.+|.+.... ....+++.....
T Consensus 201 ~~~~~~v~vGG~~~~--~~~~~~igad~~~~da--~~av~~~~~l~~ 243 (258)
T 2i2x_B 201 NGIKIPFACGGGAVN--QDFVSQFALGVYGEEA--ADAPKIADAIIA 243 (258)
T ss_dssp TTCCCCEEEESTTCC--HHHHHTSTTEEECSST--THHHHHHHHHHT
T ss_pred cCCCCcEEEECccCC--HHHHHHcCCeEEECCH--HHHHHHHHHHHc
Confidence 65 68999998775 443 344555544433 355677766553
No 18
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=93.13 E-value=0.39 Score=41.77 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=60.7
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~ 123 (334)
..+|-+-|.+=-...-=...++..|+..||++++- ..++|+|++ |++.+.. ...+.+.++++++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~l-S~~~~~~-~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGM-SALLTTT-MMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEE-ECCSGGG-THHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-ecccccc-HHHHHHHHHHHHh
Confidence 44676666655555555788899999999998742 247899998 4455443 3457778888877
Q ss_pred CC----CCEEEEccccCCChhh-hccCccEEE
Q 019874 124 AK----KPLVVAGCVPQGSRDL-KELEGVSIV 150 (334)
Q Consensus 124 ~~----~~VVv~GC~a~~~~~~-~~~~~d~vv 150 (334)
.+ .+|+|||..++ ++. ....+|.+.
T Consensus 166 ~~~~~~~~v~vGG~~~~--~~~~~~~gad~~~ 195 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLS--QDFADEIGADGYA 195 (210)
T ss_dssp TTCGGGCEEEEESTTCC--HHHHHHHTCSEEC
T ss_pred cCCCCCCeEEEECCCCC--HHHHHHcCCeEEE
Confidence 64 68999998765 444 234556544
No 19
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=92.75 E-value=0.59 Score=42.64 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=60.4
Q ss_pred CceEEEEeeCCCCChhHHHHHHHH--------HHhC-CCeeeCC--------------CCCCcEEEEeecccccc--hHH
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQ--------LSAF-GYALTDN--------------SEEADIWLINTCTVKSP--SQS 112 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~--------L~~~-G~~~~~~--------------~~~ADlviiNTCtv~~~--a~~ 112 (334)
..+|-+-|.|=-....=-..++.. |+.+ ||++++- ..+||+|.+ ||+++.. ...
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~~d~Vgl-S~l~t~~~~~~~ 198 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLV-SQTVTQKNVHIQ 198 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEE-ECCCCTTSHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcCCCEEEE-EeecCCccchHH
Confidence 445655554423333334455555 8899 9998753 358999988 6666641 335
Q ss_pred HHHHHHHHHhcCC----CCEEEEccccCCChhh-hccCccEEEcCCC
Q 019874 113 AMDTLIAKCKSAK----KPLVVAGCVPQGSRDL-KELEGVSIVGVQQ 154 (334)
Q Consensus 113 ~~~~~i~~~k~~~----~~VVv~GC~a~~~~~~-~~~~~d~vvG~~e 154 (334)
.+.+.++++++.| .+|++||-.. .++. .++.+|.+.+.+.
T Consensus 199 ~~~~~i~~L~~~g~~~~i~vivGG~~~--~~~~a~~iGad~~~~da~ 243 (262)
T 1xrs_B 199 NMTHLIELLEAEGLRDRFVLLCGGPRI--NNEIAKELGYDAGFGPGR 243 (262)
T ss_dssp HHHHHHHHHHHTTCGGGSEEEEECTTC--CHHHHHTTTCSEEECTTC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCcC--CHHHHHHcCCeEEECCch
Confidence 5677788887765 6799999743 4554 4557788887765
No 20
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=89.64 E-value=0.77 Score=46.96 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=50.7
Q ss_pred HHHHHhCCCeeeCC--------------CCCCcEEEEeecccccc--hHHHHHHHHHHHhcCC----CCEEEEccccCCC
Q 019874 79 AGQLSAFGYALTDN--------------SEEADIWLINTCTVKSP--SQSAMDTLIAKCKSAK----KPLVVAGCVPQGS 138 (334)
Q Consensus 79 ~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~--a~~~~~~~i~~~k~~~----~~VVv~GC~a~~~ 138 (334)
+..|+..||++++- ..+||+|.+ ||..+.. .-..+.++++.+++.| .+|+|||-.++
T Consensus 627 a~~LE~aGFEVIDLGvdVPpEeIVeAA~EedADVVGL-SsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~t-- 703 (763)
T 3kp1_A 627 HGGIEKYGVEVHYLGTSVPVEKLVDAAIELKADAILA-STIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVT-- 703 (763)
T ss_dssp TTCGGGGTCEEEECCSSBCHHHHHHHHHHTTCSEEEE-ECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCC--
T ss_pred HHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-eccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCC--
Confidence 45789999999754 357999999 5555542 2345667777777765 36889997654
Q ss_pred hhh-hccCccEEEcCCC
Q 019874 139 RDL-KELEGVSIVGVQQ 154 (334)
Q Consensus 139 ~~~-~~~~~d~vvG~~e 154 (334)
++. .++.+|.+++.+.
T Consensus 704 qd~AkeIGADa~f~DAT 720 (763)
T 3kp1_A 704 PEVAVKQGVDAGFGRGS 720 (763)
T ss_dssp HHHHHTTTCSEEECTTC
T ss_pred HHHHHHcCCcEEECCcc
Confidence 554 3557888887665
No 21
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=87.89 E-value=0.66 Score=47.52 Aligned_cols=101 Identities=10% Similarity=0.085 Sum_probs=65.2
Q ss_pred CceEEEEeeCCC-CChhHHHHHHHHHHhCCCeeeCC-------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 019874 58 TETIYMKTFGCS-HNQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (334)
Q Consensus 58 ~~~~~i~t~GC~-~N~~Dse~m~~~L~~~G~~~~~~-------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~ 123 (334)
..++.+-++|-- ....=...++..|+..||++++. ..+||+|+| |+.-......+..+++.+++
T Consensus 509 ~~kvvLatLg~Da~Hd~ga~~va~~l~~aGfeVi~~g~~~tee~v~aa~e~~adiv~l--Ssl~~~~~~~~~~v~~~Lk~ 586 (637)
T 1req_B 509 RPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADL--CSSAKVYAQQGLEVAKALKA 586 (637)
T ss_dssp CCBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEECCCHHHHHHHHHHHTCSEEEE--ECCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhCCchhhhhhHHHHHHHHHhCCeeEEeCCCCCCHHHHHHHHhcCCCEEEE--ecccHHHHHHHHHHHHHHHh
Confidence 457899999954 33333568889999999999865 258999999 33322223346677888888
Q ss_pred CCC-CEEEEccccCCC----hhhhccCccEEEcCCChHHHHHHHHH
Q 019874 124 AKK-PLVVAGCVPQGS----RDLKELEGVSIVGVQQIDRVVEVVEE 164 (334)
Q Consensus 124 ~~~-~VVv~GC~a~~~----~~~~~~~~d~vvG~~e~~~i~e~l~~ 164 (334)
.|. +|+|||- +... ++... .+|.++..+. ...+++.+
T Consensus 587 aG~~~V~vgG~-P~~d~~~~~~~~~-G~D~~~~~g~--~~~~~l~~ 628 (637)
T 1req_B 587 AGAKALYLSGA-FKEFGDDAAEAEK-LIDGRLFMGM--DVVDTLSS 628 (637)
T ss_dssp TTCSEEEEESC-GGGGGGGHHHHHH-HCCCEECTTC--CHHHHHHH
T ss_pred CCCCeEEEeCC-CCccchhhHHHHh-ccceEecCCc--CHHHHHHH
Confidence 884 6889984 3222 22334 5676666554 34444444
No 22
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=85.61 E-value=2.8 Score=36.78 Aligned_cols=87 Identities=11% Similarity=0.109 Sum_probs=55.4
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC--------------CCCCcEEEE--eecccccchHHHHHHHHHHH
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLI--NTCTVKSPSQSAMDTLIAKC 121 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~--------------~~~ADlvii--NTCtv~~~a~~~~~~~i~~~ 121 (334)
..++-+-|.+=-...-=-..++..|+..||++++- ..++|+|.+ ++-. + .....+.+.++++
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~-~-~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALM-T-TSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSS-H-HHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcc-c-CcHHHHHHHHHHH
Confidence 45666655543333344567888999999998753 247999998 4432 2 3334567777877
Q ss_pred hcCC----CCEEEEccccCCChhhh-ccCccE
Q 019874 122 KSAK----KPLVVAGCVPQGSRDLK-ELEGVS 148 (334)
Q Consensus 122 k~~~----~~VVv~GC~a~~~~~~~-~~~~d~ 148 (334)
++.+ .+|++||-..+ ++.. .+.+|.
T Consensus 170 ~~~~~~~~v~v~vGG~~~~--~~~a~~iGad~ 199 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVS--DKWIEEIGADA 199 (215)
T ss_dssp HHTTCGGGSEEEEESSSCC--HHHHHHHTCCB
T ss_pred HHcCCCCCCEEEEECCCCC--HHHHHHhCCeE
Confidence 7764 57999996554 5543 334443
No 23
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=83.09 E-value=3.7 Score=41.57 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=54.5
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC--------------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~--------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~ 123 (334)
..+|-+-|.+=-...-=-..++-.|+..||++++- ..++|+|++ |++.+.. ...+...++++++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgL-S~l~t~~-~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGL-SGLITPS-LDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEE-ECCSTHH-HHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEE-EecCCCC-HHHHHHHHHHHHH
Confidence 45666666554455555778889999999998643 247999998 4455433 3467778888877
Q ss_pred CC--CCEEEEccccC
Q 019874 124 AK--KPLVVAGCVPQ 136 (334)
Q Consensus 124 ~~--~~VVv~GC~a~ 136 (334)
.| .+|+|||-..+
T Consensus 176 ~g~~i~ViVGGa~~~ 190 (579)
T 3bul_A 176 QGFTIPLLIGGATTS 190 (579)
T ss_dssp TTCCSCEEEESTTCC
T ss_pred cCCCCeEEEEccccc
Confidence 65 68999997654
No 24
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=82.60 E-value=15 Score=28.81 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=66.3
Q ss_pred EEeeCCCCChhHHHHHHHHHHhCCCeeeCC-CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccCC-Chh
Q 019874 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDN-SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG-SRD 140 (334)
Q Consensus 63 i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~-~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~~-~~~ 140 (334)
|+|++= .- +-+.+.++|...||+..+. ...+|+||+ -++.-....+-+...|+.+++.|++|+.-=++.+. .|.
T Consensus 8 FISh~~--~d-~~~~L~~~l~~~~f~~~~~~I~~~~~vIv-L~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P~ 83 (111)
T 1eiw_A 8 YITEGE--VE-DYRVFLERLEQSGLEWRPATPEDADAVIV-LAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVPP 83 (111)
T ss_dssp EECCCC--SH-HHHHHHHHHHHHCSCEEECCSSSCSEEEE-EGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCCT
T ss_pred EEeccc--Hh-HHHHHHHHHhCCCCeeecCccccCCEEEE-EeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCCH
Confidence 556653 33 7888999998779988753 467899977 34543333345667788999999998866665542 233
Q ss_pred hhccCccEEEcCCChHHHHHHHHHHh
Q 019874 141 LKELEGVSIVGVQQIDRVVEVVEETL 166 (334)
Q Consensus 141 ~~~~~~d~vvG~~e~~~i~e~l~~~~ 166 (334)
.....++.++|-.. +.+.+.|....
T Consensus 84 ~l~~~a~~iV~Wn~-~~I~~aI~~~~ 108 (111)
T 1eiw_A 84 ELEAVSSEVVGWNP-HCIRDALEDAL 108 (111)
T ss_dssp THHHHCSEEECSCH-HHHHHHHHHHH
T ss_pred HHHhhCceeccCCH-HHHHHHHHhcc
Confidence 21212678899865 78888887643
No 25
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=74.39 E-value=2.8 Score=38.28 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=42.9
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccCCChhhhccCccEEEcC--CChHHHHHHH
Q 019874 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGV--QQIDRVVEVV 162 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~~~~~~~~~~~d~vvG~--~e~~~i~e~l 162 (334)
.+||+|+|+..|+.+.+ +..+++..+ ..+.+|+.|+-+...|++....++.+-|. .+.+.+.+.|
T Consensus 185 ~~aD~viiTGsTlvN~T---i~~lL~~~~-~a~~vvl~GPS~p~~P~lf~~Gv~~l~G~~V~D~~~~~~~i 251 (270)
T 2h1q_A 185 PECDYVYITCASVVDKT---LPRLLELSR-NARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIV 251 (270)
T ss_dssp GGCSEEEEETHHHHHTC---HHHHHHHTT-TSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHH
T ss_pred hcCCEEEEEeeeeecCC---HHHHHHhCc-cCCeEEEEecChhhhHHHHhcCcCEEEEeEecCHHHHHHHH
Confidence 57999999888887765 334555443 45589999999999997544555655443 2334444444
No 26
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=67.83 E-value=5.1 Score=36.53 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=37.2
Q ss_pred CCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccCCChhhhccCccEEEc
Q 019874 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVG 151 (334)
Q Consensus 94 ~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~~~~~~~~~~~d~vvG 151 (334)
.+||+|+|+..|+.+.+-++ +++.. +....||+.|+.++..|++.+..++.+-|
T Consensus 185 p~~D~viiTgstlvN~Tl~~---lL~~~-~~a~~vvl~GPStp~~P~lf~~Gv~~laG 238 (270)
T 3l5o_A 185 PECDYVYITCASVVDKTLPR---LLELS-RNARRITLVGPGTPLAPVLFEHGLQELSG 238 (270)
T ss_dssp GGCSEEEEETHHHHHTCHHH---HHHHT-TTSSEEEEESTTCCCCGGGGGTTCSEEEE
T ss_pred ccCCEEEEEeehhhcCCHHH---HHhhC-CCCCEEEEECCCchhhHHHHhcCcCEEEE
Confidence 47999999888887765333 44433 33457889999999999864444565544
No 27
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=59.49 E-value=2.6 Score=36.25 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=32.6
Q ss_pred ceEEEEeeCCCCChhHHHHHHH-----HHHhCCC-eeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-EE
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAG-----QLSAFGY-ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-VA 131 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~-----~L~~~G~-~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v~ 131 (334)
..+|+.++||. =.+.|.|+. .|+..|. .....+.+||+.+|. =+|+..-...+ +.+.+....-+.|| +|
T Consensus 34 ~slW~~~~gc~--cC~iEll~~~~p~yDl~rfGi~~~~aSPrqaDiliVe-G~Vt~~m~~~l-~~~~e~~p~pk~VIAvG 109 (181)
T 3i9v_6 34 NSLWPATFGLA--CCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVA-GRLSKKMAPVM-RRVWEQMPDPKWVISMG 109 (181)
T ss_dssp TSCCCEEEECS--THHHHHTTTTTTC----------------CCCCEEEE-SCCBTTTHHHH-HHHHHSSCSSCCEEEEH
T ss_pred CCcccccCCCC--chHHHHHHhhhchhhHHHcCcccccCCCCCceEEEEe-ccCCcccHHHH-HHHHHHcCCCceEEEee
Confidence 46788888884 345454432 1344455 445667899999884 46665433322 22333322223344 55
Q ss_pred ccccC
Q 019874 132 GCVPQ 136 (334)
Q Consensus 132 GC~a~ 136 (334)
-|...
T Consensus 110 sCA~~ 114 (181)
T 3i9v_6 110 ACASS 114 (181)
T ss_dssp HHHHS
T ss_pred ccccc
Confidence 56544
No 28
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=58.71 E-value=8.1 Score=34.68 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=42.6
Q ss_pred CCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccCCChhhh-ccCccEEEcC--CChHHHHHHHH
Q 019874 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLK-ELEGVSIVGV--QQIDRVVEVVE 163 (334)
Q Consensus 95 ~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~~~~~~~-~~~~d~vvG~--~e~~~i~e~l~ 163 (334)
+||+|+|+..|+.+.+ +..+++..+ ....+|+.|+.++..|+.. ...++.+-|. .+.+.+.+.|.
T Consensus 164 ~~D~v~iTGsTlvN~T---i~~lL~~~~-~~~~vvl~GPS~~~~P~~~~~~Gv~~l~g~~v~d~~~~l~~i~ 231 (249)
T 3npg_A 164 EVDGIIASASCIVNGT---LDMILDRAK-KAKLIVITGPTGQLLPEFLKGTKVTHLASMKVTNIEKALVKLK 231 (249)
T ss_dssp GCSEEEEETTHHHHTC---HHHHHHHCS-SCSEEEEESGGGCSCGGGGTTSSCCEEEEEEESCHHHHHHHHH
T ss_pred cCCEEEEEeeeeccCC---HHHHHHhCc-ccCeEEEEecCchhhHHHHhhCCccEEEEEEecCHHHHHHHHH
Confidence 6999999888887765 334554443 3456899999999999863 5556655443 34444555553
No 29
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=52.61 E-value=65 Score=23.80 Aligned_cols=103 Identities=12% Similarity=0.125 Sum_probs=54.7
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeC--C---------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC--
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD--N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-- 125 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~--~---------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~-- 125 (334)
++|-++. -+....+.+...|+..||.+.. + ....|+|+++...- .....+.++++++.+
T Consensus 8 ~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~----~~~g~~~~~~l~~~~~~ 79 (130)
T 3eod_A 8 KQILIVE----DEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP----RMNGLKLLEHIRNRGDQ 79 (130)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC---------CHHHHHHHHHTTCC
T ss_pred CeEEEEe----CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCC----CCCHHHHHHHHHhcCCC
Confidence 4565553 3666778888999999997742 1 24579999965321 122344556665543
Q ss_pred CCEE-EEccccCCChh-hhccCcc-EEEcCC-ChHHHHHHHHHHhcCC
Q 019874 126 KPLV-VAGCVPQGSRD-LKELEGV-SIVGVQ-QIDRVVEVVEETLKGH 169 (334)
Q Consensus 126 ~~VV-v~GC~a~~~~~-~~~~~~d-~vvG~~-e~~~i~e~l~~~~~g~ 169 (334)
.+|| +++........ .....++ .+.-+- ..+.+.+.++..+.+.
T Consensus 80 ~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 80 TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp CCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 4554 55432211111 1123445 455554 5677888887766543
No 30
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=50.63 E-value=75 Score=23.86 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=57.5
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeC--C---------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--C
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD--N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--K 125 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~--~---------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~--~ 125 (334)
.+|.++. -+....+.+...|+..||++.. + ....|+|+++. ... ....+.++++++. +
T Consensus 5 ~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~--~~~---~~g~~~~~~l~~~~~~ 75 (142)
T 2qxy_A 5 PTVMVVD----ESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV--FEG---EESLNLIRRIREEFPD 75 (142)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC--TTT---HHHHHHHHHHHHHCTT
T ss_pred CeEEEEe----CCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC--CCC---CcHHHHHHHHHHHCCC
Confidence 4455543 3566677888888888997742 1 24589999986 322 1234455555543 3
Q ss_pred CCEEEEccccCCChh-h---hccCcc-EEEcCCChHHHHHHHHHHhcCC
Q 019874 126 KPLVVAGCVPQGSRD-L---KELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (334)
Q Consensus 126 ~~VVv~GC~a~~~~~-~---~~~~~d-~vvG~~e~~~i~e~l~~~~~g~ 169 (334)
.+||+-.-... .+ . ....++ .+.-+-....+.+.|.....+.
T Consensus 76 ~pii~ls~~~~--~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 76 TKVAVLSAYVD--KDLIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp CEEEEEESCCC--HHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred CCEEEEECCCC--HHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 55554332222 22 1 122344 6666667778888888766544
No 31
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=50.46 E-value=4.5 Score=28.27 Aligned_cols=29 Identities=21% Similarity=0.118 Sum_probs=20.6
Q ss_pred eeeccCCCCCCCccccccccCCccccCCHH
Q 019874 195 ILPINVGCLGACTYCKTKHARGHLGSYTVE 224 (334)
Q Consensus 195 ~v~isrGC~~~CsfC~ip~~rG~~rsr~~e 224 (334)
+|+..+|||+ |.+|..+.+.|-.--..|+
T Consensus 9 ~v~~~~~Cpn-C~~~tt~~~~G~v~i~dP~ 37 (59)
T 3lpe_B 9 YLTNDEICPI-CHSPTSENWIGLLIVINPE 37 (59)
T ss_dssp BEESSSBCTT-TCCBEESCEECEEEESCTT
T ss_pred cccCCCCCCC-CCCCccCCEeeEEEEeCCc
Confidence 4567789998 9999877777864444443
No 32
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=50.33 E-value=51 Score=26.83 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=46.2
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeC-------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-E
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~-------~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v 130 (334)
++|+| +||.....=.+.+...|...|+...- ...+-|++|+-|-+ ... ....+.++.++++|.++| +
T Consensus 41 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~s--G~t-~~~~~~~~~ak~~g~~vi~I 115 (180)
T 1jeo_A 41 KKIFI--FGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGS--GRT-ESVLTVAKKAKNINNNIIAI 115 (180)
T ss_dssp SSEEE--ECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESS--SCC-HHHHHHHHHHHTTCSCEEEE
T ss_pred CEEEE--EeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCC--CCc-HHHHHHHHHHHHCCCcEEEE
Confidence 35555 56667777777888888888875431 12445888776654 222 356778889999998765 5
Q ss_pred Ecc
Q 019874 131 AGC 133 (334)
Q Consensus 131 ~GC 133 (334)
|+-
T Consensus 116 T~~ 118 (180)
T 1jeo_A 116 VCE 118 (180)
T ss_dssp ESS
T ss_pred eCC
Confidence 553
No 33
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=48.39 E-value=74 Score=23.49 Aligned_cols=103 Identities=11% Similarity=0.071 Sum_probs=57.9
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeC--C---------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC--
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD--N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-- 125 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~--~---------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~-- 125 (334)
++|.|+. -|....+.+...|+..||++.. + ....|+|+++...-.. ...+.++++++..
T Consensus 7 ~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~----~g~~~~~~l~~~~~~ 78 (132)
T 3lte_A 7 KRILVVD----DDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKL----DGLDVIRSLRQNKVA 78 (132)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTB----CHHHHHHHHHTTTCS
T ss_pred ccEEEEE----CCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCC----CHHHHHHHHHhcCcc
Confidence 3555543 3666778888899999997742 1 2357999997643221 2344566665532
Q ss_pred --CCEEEEccccCCChh-hhccCcc-EEEcCCChHHHHHHHHHHhcCC
Q 019874 126 --KPLVVAGCVPQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (334)
Q Consensus 126 --~~VVv~GC~a~~~~~-~~~~~~d-~vvG~~e~~~i~e~l~~~~~g~ 169 (334)
.+|++..-....... .....++ .+.-+-....+.+.|+....+.
T Consensus 79 ~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 79 NQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp SCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred CCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 455555433221111 1122445 5666677777888887765544
No 34
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=48.02 E-value=46 Score=27.23 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=46.6
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeC-------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-E
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~-------~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v 130 (334)
++|++ +||.....=...++..|...|+...- ...+-|++|+-|-+ ... ....+.++.++++|.+|| +
T Consensus 38 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vI~iS~s--G~t-~~~~~~~~~ak~~g~~vi~I 112 (186)
T 1m3s_A 38 HQIFT--AGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGS--GET-KSLIHTAAKAKSLHGIVAAL 112 (186)
T ss_dssp SCEEE--ECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSS--SCC-HHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEE--EecCHHHHHHHHHHHHHHhcCCeEEEeCcccccCCCCCCEEEEEcCC--CCc-HHHHHHHHHHHHCCCEEEEE
Confidence 35555 57767777777888888888875431 22445888775554 333 357778899999998765 5
Q ss_pred Ecc
Q 019874 131 AGC 133 (334)
Q Consensus 131 ~GC 133 (334)
|+-
T Consensus 113 T~~ 115 (186)
T 1m3s_A 113 TIN 115 (186)
T ss_dssp ESC
T ss_pred ECC
Confidence 553
No 35
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=46.77 E-value=67 Score=22.77 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHHHhCCCeeeC--C---------CCCCcEEEEeecccccchHHHHHHHHHHHhcC----CCCEE-EEccc
Q 019874 71 NQSDSEYMAGQLSAFGYALTD--N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA----KKPLV-VAGCV 134 (334)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~~~--~---------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~----~~~VV-v~GC~ 134 (334)
|....+.+...|+..||++.. + ....|+++++...- ... ..+.++++++. +.+|| +++-
T Consensus 10 ~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~-~~~---~~~~~~~l~~~~~~~~~~ii~~~~~- 84 (119)
T 2j48_A 10 EDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPP-DQS---CLLLLQHLREHQADPHPPLVLFLGE- 84 (119)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTT-CCT---HHHHHHHHHHTCCCSSCCCEEEESS-
T ss_pred CHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCC-CCC---HHHHHHHHHhccccCCCCEEEEeCC-
Confidence 455667788888888887642 1 12479999876432 211 23345555433 34544 5443
Q ss_pred cCCChhhhccCcc-EEEcCCChHHHHHHHHH
Q 019874 135 PQGSRDLKELEGV-SIVGVQQIDRVVEVVEE 164 (334)
Q Consensus 135 a~~~~~~~~~~~d-~vvG~~e~~~i~e~l~~ 164 (334)
.... ......++ .+.-+-....+...+..
T Consensus 85 ~~~~-~~~~~g~~~~l~kp~~~~~l~~~l~~ 114 (119)
T 2j48_A 85 PPVD-PLLTAQASAILSKPLDPQLLLTTLQG 114 (119)
T ss_dssp CCSS-HHHHHHCSEECSSCSTTHHHHHHHHT
T ss_pred CCch-hhhhcCHHHhccCCCCHHHHHHHHHH
Confidence 3322 22222344 34444444555555543
No 36
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=46.48 E-value=59 Score=29.90 Aligned_cols=37 Identities=11% Similarity=-0.077 Sum_probs=24.4
Q ss_pred CcEEEEeecc---cccchHHHHHHHHHHHhcCCCCEEEEc
Q 019874 96 ADIWLINTCT---VKSPSQSAMDTLIAKCKSAKKPLVVAG 132 (334)
Q Consensus 96 ADlviiNTCt---v~~~a~~~~~~~i~~~k~~~~~VVv~G 132 (334)
..+|+|+.-+ .+....++..++++.+.++|..||+.|
T Consensus 185 ~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g 224 (349)
T 3tov_A 185 DILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFG 224 (349)
T ss_dssp CCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECC
T ss_pred CCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEe
Confidence 3578887654 233445678888888876677776644
No 37
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=46.06 E-value=18 Score=30.66 Aligned_cols=71 Identities=27% Similarity=0.438 Sum_probs=42.8
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeee--CCC---CCCcEEEEeecccccchH--H--HHHHHHHHHhcCCCCE
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNS---EEADIWLINTCTVKSPSQ--S--AMDTLIAKCKSAKKPL 128 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~--~~~---~~ADlviiNTCtv~~~a~--~--~~~~~i~~~k~~~~~V 128 (334)
++||.|+-||++ |. ..+...|+..|++.+ .++ +++|.+|+- +.-.+.+ . +...+++.+++.++||
T Consensus 2 ~~~I~iiD~g~~-n~---~si~~al~~~G~~~~v~~~~~~l~~~D~lilP--G~g~~~~~~~~~~~~~~i~~~~~~~~Pv 75 (211)
T 4gud_A 2 TQNVVIIDTGCA-NI---SSVKFAIERLGYAVTISRDPQVVLAADKLFLP--GVGTASEAMKNLTERDLIELVKRVEKPL 75 (211)
T ss_dssp -CCEEEECCCCT-TH---HHHHHHHHHTTCCEEEECCHHHHHHCSEEEEC--CCSCHHHHHHHHHHTTCHHHHHHCCSCE
T ss_pred CCEEEEEECCCC-hH---HHHHHHHHHCCCEEEEECCHHHHhCCCEEEEC--CCCCHHHHHHHHHhcChHHHHHHcCCCE
Confidence 468999999985 53 347788999998653 443 368999883 3322211 1 1122355666667765
Q ss_pred EEEcccc
Q 019874 129 VVAGCVP 135 (334)
Q Consensus 129 Vv~GC~a 135 (334)
+|=|+.
T Consensus 76 -lGIClG 81 (211)
T 4gud_A 76 -LGICLG 81 (211)
T ss_dssp -EEETHH
T ss_pred -EEEchh
Confidence 344654
No 38
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=45.73 E-value=90 Score=23.17 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=60.1
Q ss_pred CCceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC------------CCCCcEEEEeecccccchHHHHHHHHHHHhcC
Q 019874 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (334)
Q Consensus 57 ~~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~------------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~ 124 (334)
.+.+|-|+. -|....+.+...|+..||++... ....|+|+++.-.- .. ...+.++++++.
T Consensus 6 ~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~-~~---~g~~~~~~l~~~ 77 (136)
T 3hdv_A 6 ARPLVLVVD----DNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQ-PE---SGLDLIRTIRAS 77 (136)
T ss_dssp -CCEEEEEC----SCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCS-SS---CHHHHHHHHHTS
T ss_pred CCCeEEEEC----CCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCC-CC---CHHHHHHHHHhc
Confidence 345666654 36677788999999999987521 12389999865321 21 234456666654
Q ss_pred ---CCCEE-EEccccCCChh-hhccCcc-EEEcCCChHHHHHHHHHHhcCCc
Q 019874 125 ---KKPLV-VAGCVPQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLKGHE 170 (334)
Q Consensus 125 ---~~~VV-v~GC~a~~~~~-~~~~~~d-~vvG~~e~~~i~e~l~~~~~g~~ 170 (334)
+.+|| +++........ .....++ .+.-+-....+.+.|+....+..
T Consensus 78 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 78 ERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp TTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred CCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 24555 44432111111 1123455 67777777888888888776653
No 39
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=45.22 E-value=1.2e+02 Score=27.17 Aligned_cols=70 Identities=10% Similarity=0.041 Sum_probs=44.5
Q ss_pred ceEEEEeeCCCCChhH-HHHHHHHHHhCC-Ceee--C-------------CCCCCcEEEEeecccccchHHHHHHHHHHH
Q 019874 59 ETIYMKTFGCSHNQSD-SEYMAGQLSAFG-YALT--D-------------NSEEADIWLINTCTVKSPSQSAMDTLIAKC 121 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~D-se~m~~~L~~~G-~~~~--~-------------~~~~ADlviiNTCtv~~~a~~~~~~~i~~~ 121 (334)
.|+-|++=++.+.-.. .+.|+..|++.| |++. + +..++|+||+|++.-.-.. ...+.+.++
T Consensus 5 ~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~~~~l~~--~~~~~l~~y 82 (281)
T 4e5v_A 5 IKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGDSWPE--ETNRRFLEY 82 (281)
T ss_dssp EEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCCSSCCCH--HHHHHHHHH
T ss_pred eEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCCCCcCCH--HHHHHHHHH
Confidence 4667777778777322 267888888888 7652 2 2457999999886422222 234455666
Q ss_pred hcCCCCEEE
Q 019874 122 KSAKKPLVV 130 (334)
Q Consensus 122 k~~~~~VVv 130 (334)
-+.|..+|+
T Consensus 83 V~~Ggglv~ 91 (281)
T 4e5v_A 83 VQNGGGVVI 91 (281)
T ss_dssp HHTTCEEEE
T ss_pred HHcCCCEEE
Confidence 667766664
No 40
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=43.63 E-value=76 Score=25.84 Aligned_cols=69 Identities=10% Similarity=0.113 Sum_probs=45.9
Q ss_pred EEEeeCCCCChhHHHHHHHHHHhCCCeee--C-C----------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCE
Q 019874 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALT--D-N----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPL 128 (334)
Q Consensus 62 ~i~t~GC~~N~~Dse~m~~~L~~~G~~~~--~-~----------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~V 128 (334)
.|.-+||.....-.+.+...|...|.... + + ..+-|++|+-|-+ ... ....+.++.++++|.+|
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~s--G~t-~~~~~~~~~ak~~g~~v 117 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVW--RYL-RDTVAALAGAAERGVPT 117 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCS--SCC-HHHHHHHHHHHHTTCCE
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCC--CCC-HHHHHHHHHHHHCCCCE
Confidence 34456666777788888888888887542 2 1 2345888775543 333 35777888999999876
Q ss_pred E-EEcc
Q 019874 129 V-VAGC 133 (334)
Q Consensus 129 V-v~GC 133 (334)
| +|+-
T Consensus 118 i~IT~~ 123 (187)
T 3sho_A 118 MALTDS 123 (187)
T ss_dssp EEEESC
T ss_pred EEEeCC
Confidence 6 5553
No 41
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=43.59 E-value=1.1e+02 Score=23.48 Aligned_cols=72 Identities=10% Similarity=0.138 Sum_probs=53.5
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeeccccc---chHHHHHHHHHHHhcCCCCEEEEccccC
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS---PSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~---~a~~~~~~~i~~~k~~~~~VVv~GC~a~ 136 (334)
.+.++.+.-++...-++.+...|... .+....|||+--.|.. .+-.-+..+.++++++|..|++.|+.++
T Consensus 20 ~v~v~~~~G~L~f~~a~~~~~~l~~~-------~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 92 (130)
T 4dgh_A 20 ELAVYALEGPFFFAAAETFERVMGSI-------QETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSR 92 (130)
T ss_dssp TEEEEECCSSCCHHHHHHHHHHHHHS-------SSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCHH
T ss_pred CEEEEEEeeeEeehhHHHHHHHHHHh-------ccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46778888899999999999998753 1345788888766654 2345566667788889999999998654
Q ss_pred CC
Q 019874 137 GS 138 (334)
Q Consensus 137 ~~ 138 (334)
..
T Consensus 93 v~ 94 (130)
T 4dgh_A 93 VS 94 (130)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 42
>4f54_A Uncharacterized protein; PF13590 family protein, DUF4136, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.60A {Bacteroides thetaiotaomicron}
Probab=42.98 E-value=19 Score=31.08 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=24.9
Q ss_pred hhHHHHH----HHHHHhCCCeeeCCCCCCcEEEEeeccccc
Q 019874 72 QSDSEYM----AGQLSAFGYALTDNSEEADIWLINTCTVKS 108 (334)
Q Consensus 72 ~~Dse~m----~~~L~~~G~~~~~~~~~ADlviiNTCtv~~ 108 (334)
.-+.++| ..+|.+.||..+++.+.||+. ||--.++.
T Consensus 55 dl~~kRI~~aV~~~L~akG~~~v~~~~~pDll-V~~~~~~~ 94 (197)
T 4f54_A 55 GEGAEQILAAYTENMEAXGYQPAADXESADLG-IQVSYIAS 94 (197)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEECSSTTTCSEE-EEEEEESC
T ss_pred cHHHHHHHHHHHHHHHhcCceecCCCCCCCEE-EEEEEEEE
Confidence 3445444 467888999999888999998 44434443
No 43
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=41.25 E-value=96 Score=23.18 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=58.5
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeC--C---------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--C
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD--N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--K 125 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~--~---------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~--~ 125 (334)
.+|.|+. -+....+.+...|+..||++.. + ....|+|++..-. -.. .....++++++++. +
T Consensus 7 ~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~-~~~g~~~~~~l~~~~~~ 80 (136)
T 3kto_A 7 PIIYLVD----HQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHL-EDK-KDSGIELLETLVKRGFH 80 (136)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTG-GGB-TTHHHHHHHHHHHTTCC
T ss_pred CeEEEEc----CCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcC-CCC-CccHHHHHHHHHhCCCC
Confidence 4555553 3566677888899889997742 1 2357999986532 110 02345566666655 3
Q ss_pred CCEE-EEccccCCChh-hhccCcc-EEEcCCChHHHHHHHHHHhcC
Q 019874 126 KPLV-VAGCVPQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLKG 168 (334)
Q Consensus 126 ~~VV-v~GC~a~~~~~-~~~~~~d-~vvG~~e~~~i~e~l~~~~~g 168 (334)
.+|| +++........ .....++ .+.-+-....+.+.|+....+
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 81 LPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 4554 55533211111 1133444 566666777788877766543
No 44
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=40.76 E-value=91 Score=23.94 Aligned_cols=75 Identities=8% Similarity=0.078 Sum_probs=53.5
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeeccccc---chHHHHHHHHHHHhcCCCCEEEEccccC
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS---PSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~---~a~~~~~~~i~~~k~~~~~VVv~GC~a~ 136 (334)
.+.++.+.-++...-++.+...|.+.- .+.+.....|||+-..|+. .+-.-+..+.+++++.|..+++.|+-++
T Consensus 15 ~v~v~~l~G~L~f~~a~~~~~~l~~~~---~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 91 (130)
T 2kln_A 15 GLVVYRYDAPLCFANAEDFRRRALTVV---DQDPGQVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQD 91 (130)
T ss_dssp SEEEEECCSCCBTTTHHHHHHHHHHHT---TSSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSSH
T ss_pred CEEEEEECCceEechHHHHHHHHHHHH---hcCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 477778888999999999999987641 0111145678887665543 2345677778888999999999998654
Q ss_pred C
Q 019874 137 G 137 (334)
Q Consensus 137 ~ 137 (334)
.
T Consensus 92 v 92 (130)
T 2kln_A 92 L 92 (130)
T ss_dssp H
T ss_pred H
Confidence 3
No 45
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=40.67 E-value=79 Score=23.61 Aligned_cols=102 Identities=10% Similarity=0.100 Sum_probs=57.1
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCC-CeeeC--C---------CCCCcEEEEeecccccchHHHHHHHHHHHhcC-
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFG-YALTD--N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA- 124 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G-~~~~~--~---------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~- 124 (334)
+.+|.++. -+....+.+...|+..| |++.. + ....|+|++..-.- . ....+.++++++.
T Consensus 14 ~~~ilivd----d~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~-~---~~g~~~~~~l~~~~ 85 (135)
T 3snk_A 14 RKQVALFS----SDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGG-D---LLGKPGIVEARALW 85 (135)
T ss_dssp CEEEEEEC----SCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETT-G---GGGSTTHHHHHGGG
T ss_pred CcEEEEEc----CCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCC-C---chHHHHHHHHHhhC
Confidence 45676664 36777788999999999 87742 1 24579999975421 1 1123344555443
Q ss_pred -CCCEE-EEccccCCChhh-hccCcc-EEEcCCChHHHHHHHHHHhc
Q 019874 125 -KKPLV-VAGCVPQGSRDL-KELEGV-SIVGVQQIDRVVEVVEETLK 167 (334)
Q Consensus 125 -~~~VV-v~GC~a~~~~~~-~~~~~d-~vvG~~e~~~i~e~l~~~~~ 167 (334)
+.+|| +++......... ....++ .+.-+-....+...|+..+.
T Consensus 86 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 86 ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 34554 555322111111 123444 56667676777777765443
No 46
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=40.49 E-value=6.5 Score=27.42 Aligned_cols=17 Identities=41% Similarity=0.952 Sum_probs=14.8
Q ss_pred eccCCCCCCCccccccc
Q 019874 197 PINVGCLGACTYCKTKH 213 (334)
Q Consensus 197 ~isrGC~~~CsfC~ip~ 213 (334)
+..+||-+.|.||....
T Consensus 19 KFADG~Gh~C~yCk~r~ 35 (62)
T 2a20_A 19 KFADGCGHNCSYCQTKF 35 (62)
T ss_dssp CCCSSCCEEBTTTCCEE
T ss_pred eeccCCCccccccCCee
Confidence 56799999999999864
No 47
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=40.47 E-value=21 Score=27.51 Aligned_cols=60 Identities=12% Similarity=0.152 Sum_probs=33.0
Q ss_pred HHHHHHHhCCCee--eC--C-----CCCCcEEEEeecccccchHHH--HHHHHHHHhc--CCCCEEEEccccC
Q 019874 77 YMAGQLSAFGYAL--TD--N-----SEEADIWLINTCTVKSPSQSA--MDTLIAKCKS--AKKPLVVAGCVPQ 136 (334)
Q Consensus 77 ~m~~~L~~~G~~~--~~--~-----~~~ADlviiNTCtv~~~a~~~--~~~~i~~~k~--~~~~VVv~GC~a~ 136 (334)
.+++.|.+.|+++ .+ + ..++|.|++-|-+.-...... +...++++.. +|+++.+-|++..
T Consensus 19 ~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~l~~k~~~~~~t~g~ 91 (137)
T 2fz5_A 19 EIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAPKLKGKKVGLFGSYGW 91 (137)
T ss_dssp HHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGGCSSCEEEEEEEESS
T ss_pred HHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhhhcCCCEEEEEEecCC
Confidence 3444555567654 21 1 246899999776542221112 5666666643 4667766666543
No 48
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=39.17 E-value=24 Score=27.47 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCeee----C-----CCCCCcEEEEeecccccc-hHH-HHHHHHHHHhc--CCCCEEEEccccCC
Q 019874 76 EYMAGQLSAFGYALT----D-----NSEEADIWLINTCTVKSP-SQS-AMDTLIAKCKS--AKKPLVVAGCVPQG 137 (334)
Q Consensus 76 e~m~~~L~~~G~~~~----~-----~~~~ADlviiNTCtv~~~-a~~-~~~~~i~~~k~--~~~~VVv~GC~a~~ 137 (334)
+.|++.|.+.|+++. . +..++|+|++-|.|.-.. ... .+...++++.. +|+++.+=|++...
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~l~~k~~~~f~t~g~~ 91 (138)
T 5nul_A 17 ELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEISTKISGKKVALFGSYGWG 91 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGGCTTCEEEEEEEESSS
T ss_pred HHHHHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhhcCCCEEEEEEecCCC
Confidence 455666677776531 1 125789999977764321 111 35555666653 57777777776543
No 49
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=37.55 E-value=83 Score=25.47 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=44.3
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeee--C----------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCC
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT--D----------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~--~----------~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~ 126 (334)
++|+|. ||.....-.+.+...|...|+... . ...+-|++|+-|-+ ... ....+.++.++++|.
T Consensus 50 ~~I~i~--G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~s--G~t-~~~~~~~~~ak~~g~ 124 (183)
T 2xhz_A 50 GKVVVM--GMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNS--GES-SEITALIPVLKRLHV 124 (183)
T ss_dssp SCEEEE--ECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSS--SCC-HHHHHHHHHHHTTTC
T ss_pred CeEEEE--eecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCC--CCC-HHHHHHHHHHHHCCC
Confidence 367765 444555566777888877787542 1 12356888876654 222 357778888999998
Q ss_pred CEE-EEc
Q 019874 127 PLV-VAG 132 (334)
Q Consensus 127 ~VV-v~G 132 (334)
++| +|+
T Consensus 125 ~vi~IT~ 131 (183)
T 2xhz_A 125 PLICITG 131 (183)
T ss_dssp CEEEEES
T ss_pred CEEEEEC
Confidence 765 555
No 50
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=37.36 E-value=1.2e+02 Score=22.27 Aligned_cols=96 Identities=7% Similarity=0.041 Sum_probs=55.1
Q ss_pred ChhHHHHHHHHHHhCCCeee---CCC---------CCCcEEEEeecccccchHHHHHHHHHHHhcCC--CCEE-EEcccc
Q 019874 71 NQSDSEYMAGQLSAFGYALT---DNS---------EEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KPLV-VAGCVP 135 (334)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~~---~~~---------~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~--~~VV-v~GC~a 135 (334)
|....+.+...|+..||+++ .+. ...|+|+++... ... ...+.++++++.+ .+|| +++-..
T Consensus 10 ~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l-~~~---~g~~~~~~l~~~~~~~~ii~~s~~~~ 85 (134)
T 3f6c_A 10 HPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDI-PGV---NGIQVLETLRKRQYSGIIIIVSAKND 85 (134)
T ss_dssp CHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTC-SSS---CHHHHHHHHHHTTCCSEEEEEECC--
T ss_pred CHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCC-CCC---ChHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 55667788899999998775 232 247999997543 221 2344556665543 4554 554322
Q ss_pred CCChhh-hccCcc-EEEcCCChHHHHHHHHHHhcCCc
Q 019874 136 QGSRDL-KELEGV-SIVGVQQIDRVVEVVEETLKGHE 170 (334)
Q Consensus 136 ~~~~~~-~~~~~d-~vvG~~e~~~i~e~l~~~~~g~~ 170 (334)
...... ....++ .+.-+-..+.+.+.|+....+..
T Consensus 86 ~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 86 HFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp -CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 222211 233455 56666666788888887776653
No 51
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=37.05 E-value=59 Score=29.27 Aligned_cols=84 Identities=23% Similarity=0.142 Sum_probs=57.5
Q ss_pred CChhHHHHHHHHHHhCCCeee--CCCC-------CCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE--ccccCCC
Q 019874 70 HNQSDSEYMAGQLSAFGYALT--DNSE-------EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA--GCVPQGS 138 (334)
Q Consensus 70 ~N~~Dse~m~~~L~~~G~~~~--~~~~-------~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~--GC~a~~~ 138 (334)
-|.+=....+..|.+.|-..+ +.++ -||.++||.-|.+....+.+...++.+.+.++|||+= |+.++.+
T Consensus 22 TN~V~~n~~AN~lLA~GasPiMa~~~~E~~e~~~~a~al~iNiGtl~~~~~~~m~~A~~~A~~~~~PvVLDPVg~gas~~ 101 (265)
T 3hpd_A 22 TNFVVMNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGATKF 101 (265)
T ss_dssp CCTTTHHHHHHHHHHHTCEEEECCCTTTHHHHHHHCSEEEEECTTCCHHHHHHHHHHHHHHHHHTCCEEEECTTBTTBHH
T ss_pred cchhhHHHHHHHHHHhCCchhhcCCHHHHHHHHHHCCeEEEECCCCChHHHHHHHHHHHHHHHcCCCEEEcCCCCCCcHH
Confidence 466667778888888887664 3333 3799999999987766667777777888889999864 6666544
Q ss_pred hh-h-h---ccCccEEEcCC
Q 019874 139 RD-L-K---ELEGVSIVGVQ 153 (334)
Q Consensus 139 ~~-~-~---~~~~d~vvG~~ 153 (334)
.. . . ....++|-|+.
T Consensus 102 R~~~~~~ll~~~~~vIrgN~ 121 (265)
T 3hpd_A 102 RTRVSLEILSRGVDVLKGNF 121 (265)
T ss_dssp HHHHHHHHHHHCCSEEEEEH
T ss_pred HHHHHHHHHhcCCcEEcCCH
Confidence 32 1 1 11345666653
No 52
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=37.01 E-value=65 Score=26.94 Aligned_cols=69 Identities=19% Similarity=0.322 Sum_probs=45.1
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeee-------CCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEE-E
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-------DNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLV-V 130 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~-------~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VV-v 130 (334)
++|+| +||.....=.+.+...|...|+... ....+-|++|+-|-+ ... ..+.+.++.++++|.+|| +
T Consensus 48 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~DvvI~iS~S--G~t-~~~i~~~~~ak~~g~~vI~I 122 (200)
T 1vim_A 48 RSIFV--IGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGS--GET-TSVVNISKKAKDIGSKLVAV 122 (200)
T ss_dssp SCEEE--ECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSS--SCC-HHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEE--EEecHHHHHHHHHHHHHHhcCCeEEEeCCccccCCCCCCEEEEEeCC--CCc-HHHHHHHHHHHHCCCeEEEE
Confidence 35555 5666767777778888888886442 123345888875544 222 346778888888898766 5
Q ss_pred Ec
Q 019874 131 AG 132 (334)
Q Consensus 131 ~G 132 (334)
|+
T Consensus 123 T~ 124 (200)
T 1vim_A 123 TG 124 (200)
T ss_dssp ES
T ss_pred EC
Confidence 54
No 53
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=35.78 E-value=66 Score=25.14 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=33.0
Q ss_pred HHHHHHhCCCeee---------CCCC-CCcEEEEeeccccc---chHHHHHHHHHHHhc---CCCCEEEEccc
Q 019874 78 MAGQLSAFGYALT---------DNSE-EADIWLINTCTVKS---PSQSAMDTLIAKCKS---AKKPLVVAGCV 134 (334)
Q Consensus 78 m~~~L~~~G~~~~---------~~~~-~ADlviiNTCtv~~---~a~~~~~~~i~~~k~---~~~~VVv~GC~ 134 (334)
++..|.+.|+++. ++.. ++|.|++-|.|.-. .....+...++.+.. .|+++.+-|+.
T Consensus 22 ia~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~k~~~vfg~G 94 (148)
T 3f6r_A 22 LEELIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAGRKVAAFASG 94 (148)
T ss_dssp HHHHHHTTTCEEEEEETTTBCCTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTTCEEEEEEEE
T ss_pred HHHHHHhCCCeEEEEehhhCCHhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCCCEEEEEEeC
Confidence 4444555676431 2335 88999998877542 222346666666543 35667666663
No 54
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=35.37 E-value=1.5e+02 Score=22.77 Aligned_cols=98 Identities=9% Similarity=0.067 Sum_probs=55.3
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeee---CCC---------C--CCcEEEEeecccccchHHHHHHHHHHHhc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT---DNS---------E--EADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~---~~~---------~--~ADlviiNTCtv~~~a~~~~~~~i~~~k~ 123 (334)
+.+|.|+. -|....+.+...|+..||+++ .+. . ..|+|+++...- .. ...++++++++
T Consensus 36 ~~~Ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~-~~---~g~~~~~~lr~ 107 (157)
T 3hzh_A 36 PFNVLIVD----DSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMP-KM---DGITCLSNIME 107 (157)
T ss_dssp ECEEEEEC----SCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCS-SS---CHHHHHHHHHH
T ss_pred ceEEEEEe----CCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCC-Cc---cHHHHHHHHHh
Confidence 34666653 477778889999999999865 221 2 579999975432 21 12344555544
Q ss_pred C--CCCEEEEccccCCChhh----hccCcc-EEEcCCChHHHHHHHHHH
Q 019874 124 A--KKPLVVAGCVPQGSRDL----KELEGV-SIVGVQQIDRVVEVVEET 165 (334)
Q Consensus 124 ~--~~~VVv~GC~a~~~~~~----~~~~~d-~vvG~~e~~~i~e~l~~~ 165 (334)
. +.+||+-.-.. .++. ....++ .+.-+-....+.+.|...
T Consensus 108 ~~~~~~ii~ls~~~--~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 154 (157)
T 3hzh_A 108 FDKNARVIMISALG--KEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSV 154 (157)
T ss_dssp HCTTCCEEEEESCC--CHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHT
T ss_pred hCCCCcEEEEeccC--cHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 3 34555433222 2221 133445 566666666677766543
No 55
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=35.29 E-value=92 Score=27.15 Aligned_cols=86 Identities=12% Similarity=0.031 Sum_probs=52.3
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccCCC
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~~~ 138 (334)
.+|.+++|+=.. .+.+.+...| | -|+... ++.. ++.+...++++++.|..+||||-++...
T Consensus 107 ~kIavVg~~~~~--~~~~~i~~ll---~---------~~i~~~---~~~~--~ee~~~~i~~l~~~G~~vVVG~~~~~~~ 167 (225)
T 2pju_A 107 SSIGVVTYQETI--PALVAFQKTF---N---------LRLDQR---SYIT--EEDARGQINELKANGTEAVVGAGLITDL 167 (225)
T ss_dssp SCEEEEEESSCC--HHHHHHHHHH---T---------CCEEEE---EESS--HHHHHHHHHHHHHTTCCEEEESHHHHHH
T ss_pred CcEEEEeCchhh--hHHHHHHHHh---C---------CceEEE---EeCC--HHHHHHHHHHHHHCCCCEEECCHHHHHH
Confidence 589999996332 2334555555 2 234333 3333 3467888999999999999999766433
Q ss_pred hhhhccCccEEEcCCChHHHHHHHHHHh
Q 019874 139 RDLKELEGVSIVGVQQIDRVVEVVEETL 166 (334)
Q Consensus 139 ~~~~~~~~d~vvG~~e~~~i~e~l~~~~ 166 (334)
.+ +.....++-.. .+.+.+.++++.
T Consensus 168 A~--~~Gl~~vlI~s-~eSI~~Ai~eA~ 192 (225)
T 2pju_A 168 AE--EAGMTGIFIYS-AATVRQAFSDAL 192 (225)
T ss_dssp HH--HTTSEEEESSC-HHHHHHHHHHHH
T ss_pred HH--HcCCcEEEECC-HHHHHHHHHHHH
Confidence 32 22223333334 478888887653
No 56
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=34.65 E-value=51 Score=27.32 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=44.9
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHH------HhCCCeee--C-------------------------CCCCCcEEEEeecc
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQL------SAFGYALT--D-------------------------NSEEADIWLINTCT 105 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L------~~~G~~~~--~-------------------------~~~~ADlviiNTCt 105 (334)
++|++ +||.....-.+.+...| ...|+... . ...+-|++|+-|-+
T Consensus 46 ~~I~i--~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~DvvI~iS~S 123 (199)
T 1x92_A 46 GKILS--CGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTS 123 (199)
T ss_dssp CCEEE--ECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHHHHTCGGGTTHHHHHHHCCTTCEEEEECSS
T ss_pred CEEEE--EcCchhHHHHHHHHHHHhcCcccCCCCCceEecCCChhHHHHhhcCccHHHHHHHHHHhCCCCCCEEEEEeCC
Confidence 45665 57777777777888887 44565432 1 12445888876654
Q ss_pred cccchHHHHHHHHHHHhcCCCCEE-EEcc
Q 019874 106 VKSPSQSAMDTLIAKCKSAKKPLV-VAGC 133 (334)
Q Consensus 106 v~~~a~~~~~~~i~~~k~~~~~VV-v~GC 133 (334)
= .+ ..+.+.++.++++|.++| +++-
T Consensus 124 G--~t-~~~i~~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 124 G--NS-ANVIQAIQAAHDREMLVVALTGR 149 (199)
T ss_dssp S--CC-HHHHHHHHHHHHTTCEEEEEECT
T ss_pred C--CC-HHHHHHHHHHHHCCCEEEEEECC
Confidence 2 22 356778899999998765 6653
No 57
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=33.98 E-value=1.8e+02 Score=27.45 Aligned_cols=101 Identities=10% Similarity=0.020 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCC---CCHHHHHHHHHHhCCCCCCceEEEeecCCC-ChhhhHHHHH
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKEIA 296 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~---~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~-~i~~~l~~l~ 296 (334)
.++++++++++.+++.|++.|-+.|.+-..+ .+.. ..-.+.++++.+.++ ....+++. .|-. ...+-+.-+.
T Consensus 124 ~~~e~~~~~a~~~~~~G~~~iKl~G~~~~~~-~~~~~~~~~d~e~v~avR~avG--~d~~L~vD-aN~~~~~~~A~~~~~ 199 (405)
T 3rr1_A 124 DRPADVIAGMKALQAGGFDHFKLNGCEEMGI-IDTSRAVDAAVARVAEIRSAFG--NTVEFGLD-FHGRVSAPMAKVLIK 199 (405)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEESCCSSSC-BCSHHHHHHHHHHHHHHHHTTG--GGSEEEEE-CCSCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcccc-cccchhHHHHHHHHHHHHHHhC--CCceEEEE-CCCCCCHHHHHHHHH
Confidence 4789999999999999999999865431111 0100 112467777776553 34566654 3332 2222221123
Q ss_pred HHHhCCCCCCeEEEccCCcCHHHHHHhCCCC
Q 019874 297 EVLRHPCVYSFLHVPVQSGSDAVLSVSQKIV 327 (334)
Q Consensus 297 ~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~ 327 (334)
.|.. .+..+|.=|+-..+-+-++..++..
T Consensus 200 ~L~~--~~i~~iEeP~~~~d~~~~~~l~~~~ 228 (405)
T 3rr1_A 200 ELEP--YRPLFIEEPVLAEQAETYARLAAHT 228 (405)
T ss_dssp HHGG--GCCSCEECSSCCSSTHHHHHHHTTC
T ss_pred HHHh--cCCCEEECCCCcccHHHHHHHHhcC
Confidence 3332 4678899888877777788777654
No 58
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=33.31 E-value=87 Score=25.73 Aligned_cols=70 Identities=11% Similarity=0.177 Sum_probs=44.0
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHH------hCCCeeeC-------------C--------------CCCCcEEEEeecc
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLS------AFGYALTD-------------N--------------SEEADIWLINTCT 105 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~------~~G~~~~~-------------~--------------~~~ADlviiNTCt 105 (334)
++|++ +||.....-.+.+...|. ..|+.... + ..+-|++|+-|-+
T Consensus 42 ~~I~i--~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~DvvI~iS~S 119 (196)
T 2yva_A 42 NKILC--CGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTR 119 (196)
T ss_dssp CCEEE--EESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCCTTCEEEEECSS
T ss_pred CEEEE--EeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 45555 566667777777777776 55654321 1 2344888776654
Q ss_pred cccchHHHHHHHHHHHhcCCCCEE-EEcc
Q 019874 106 VKSPSQSAMDTLIAKCKSAKKPLV-VAGC 133 (334)
Q Consensus 106 v~~~a~~~~~~~i~~~k~~~~~VV-v~GC 133 (334)
= .. ..+.+.++.++++|.++| +++-
T Consensus 120 G--~t-~~~i~~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 120 G--NS-RDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp S--CC-HHHHHHHHHHHHTTCEEEEEECT
T ss_pred C--CC-HHHHHHHHHHHHCCCEEEEEeCC
Confidence 2 22 356778889999998765 6663
No 59
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=32.78 E-value=1.5e+02 Score=22.04 Aligned_cols=92 Identities=8% Similarity=0.070 Sum_probs=53.2
Q ss_pred CChhHHHHHHHHHHhCCCeeeC--C-----------CCCCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEE-EEcc
Q 019874 70 HNQSDSEYMAGQLSAFGYALTD--N-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLV-VAGC 133 (334)
Q Consensus 70 ~N~~Dse~m~~~L~~~G~~~~~--~-----------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~--~~~VV-v~GC 133 (334)
-|....+.+...|+..||++.. + ....|+|+++...-... ..++++++++. +.+|| +++.
T Consensus 11 d~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~----g~~~~~~l~~~~~~~~ii~ls~~ 86 (143)
T 3jte_A 11 DESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLS----GMDILREIKKITPHMAVIILTGH 86 (143)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSC----HHHHHHHHHHHCTTCEEEEEECT
T ss_pred CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCc----HHHHHHHHHHhCCCCeEEEEECC
Confidence 3566778888889989987642 1 34689999976432212 23344444433 34555 4442
Q ss_pred ccCCChh--h--hccCcc-EEEcCCChHHHHHHHHHHhcC
Q 019874 134 VPQGSRD--L--KELEGV-SIVGVQQIDRVVEVVEETLKG 168 (334)
Q Consensus 134 ~a~~~~~--~--~~~~~d-~vvG~~e~~~i~e~l~~~~~g 168 (334)
. ..+ . ....++ .+.-+-....+...|...+.+
T Consensus 87 -~--~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 87 -G--DLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp -T--CHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred -C--CHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 2 222 1 123444 566677777788887765543
No 60
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=32.58 E-value=1.4e+02 Score=21.66 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=51.8
Q ss_pred ChhHHHHHHHHHHhCCCeeeC--C---------CCCCcEEEEeecccccchHHHHHHHHHHHhcC----CCCEE-EEccc
Q 019874 71 NQSDSEYMAGQLSAFGYALTD--N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA----KKPLV-VAGCV 134 (334)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~~~--~---------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~----~~~VV-v~GC~ 134 (334)
|....+.+...|+..||++.. + ....|+|+++...-.. ...++++++++. +.+|| +++..
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~----~g~~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 12 YQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDT----SGLALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp CHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSS----BHHHHHHHHHHSCCSSCCEEEEEECC-
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCC----CHHHHHHHHHhhhccCCCCEEEEECCc
Confidence 566677888889999987642 2 1357999997643222 233455555543 34544 55543
Q ss_pred cCCChhhhccCcc-EEEcCCChHHHHHHHHHHh
Q 019874 135 PQGSRDLKELEGV-SIVGVQQIDRVVEVVEETL 166 (334)
Q Consensus 135 a~~~~~~~~~~~d-~vvG~~e~~~i~e~l~~~~ 166 (334)
...........++ .+.-+-....+.+.+....
T Consensus 88 ~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 88 KNDLGKEACELFDFYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC
T ss_pred chhHHHHHHHhhHHheeCCCCHHHHHHHHHHhh
Confidence 3332111122344 5666667677777776543
No 61
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=32.45 E-value=1.4e+02 Score=26.26 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=36.8
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~ 131 (334)
..+..+...|..+...|-+.+...+. ....+|+++++.........+.+..+++.+++.|.+|++=
T Consensus 101 g~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~v~~D 166 (309)
T 3umo_A 101 GEQYRFVMPGAALNEDEFRQLEEQVL--------EIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVD 166 (309)
T ss_dssp CCEEEEECCCCCCCHHHHHHHHHHHT--------TSCTTCEEEEESCCCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHH--------hcCCCCEEEEEccCCCCCCHHHHHHHHHHHHhcCCEEEEE
Confidence 34555666776555444443333332 1245788887542211222345667788888888877763
No 62
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=31.93 E-value=1.6e+02 Score=22.05 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=59.8
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCC-CeeeC--C----------C-CCCcEEEEeecccccchHHHHHHHHHHHhc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFG-YALTD--N----------S-EEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G-~~~~~--~----------~-~~ADlviiNTCtv~~~a~~~~~~~i~~~k~ 123 (334)
..+|.|+. -+..-.+.+...|+..| |+++. + . ...|+|+++..- .. ....++++++++
T Consensus 20 ~~~ilivd----d~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~---~~g~~~~~~l~~ 91 (146)
T 4dad_A 20 MINILVAS----EDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAA-LD---TAELAAIEKLSR 91 (146)
T ss_dssp GCEEEEEC----SCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTT-CC---HHHHHHHHHHHH
T ss_pred CCeEEEEe----CCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCC-CC---ccHHHHHHHHHH
Confidence 45666654 36667788899999999 87742 1 1 567999996532 22 234455666554
Q ss_pred C--CCCEE-EEccccCCChhh-hccCcc-EEEcCCChHHHHHHHHHHhcCC
Q 019874 124 A--KKPLV-VAGCVPQGSRDL-KELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (334)
Q Consensus 124 ~--~~~VV-v~GC~a~~~~~~-~~~~~d-~vvG~~e~~~i~e~l~~~~~g~ 169 (334)
. +.+|| +++......... ....++ .+.-+-....+...|...+.+.
T Consensus 92 ~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 92 LHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp HCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 3 34554 544321111111 123344 5666777778888887766543
No 63
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=31.47 E-value=1.7e+02 Score=22.21 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=58.3
Q ss_pred CCCCceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeC--C---------CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 019874 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD--N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (334)
Q Consensus 55 ~~~~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~--~---------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~ 123 (334)
...+.+|.|+. -+....+.+...|+..||++.. + ....|+|+++...-... ..++++++++
T Consensus 11 ~~~~~~ILivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~----g~~~~~~l~~ 82 (153)
T 3hv2_A 11 VTRRPEILLVD----SQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMD----GPTLLARIHQ 82 (153)
T ss_dssp CCSCCEEEEEC----SCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSC----HHHHHHHHHH
T ss_pred ccCCceEEEEC----CCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCc----HHHHHHHHHh
Confidence 34456777764 3566678888999999997742 2 23579999976432222 2334444443
Q ss_pred C--CCCEEE-EccccCCChhh--hccC-cc-EEEcCCChHHHHHHHHHHhc
Q 019874 124 A--KKPLVV-AGCVPQGSRDL--KELE-GV-SIVGVQQIDRVVEVVEETLK 167 (334)
Q Consensus 124 ~--~~~VVv-~GC~a~~~~~~--~~~~-~d-~vvG~~e~~~i~e~l~~~~~ 167 (334)
. +.+||+ ++. ....... .... ++ .+.-+-....+...|+..+.
T Consensus 83 ~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 83 QYPSTTRILLTGD-PDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp HCTTSEEEEECCC-CCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred HCCCCeEEEEECC-CCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 3 445554 442 2111111 1233 45 56666677777777766543
No 64
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=31.05 E-value=3.9e+02 Score=26.26 Aligned_cols=191 Identities=15% Similarity=0.126 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccc---hHHHHHHHHHHHhcC-CCCEEEEccccCC--------
Q 019874 70 HNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSP---SQSAMDTLIAKCKSA-KKPLVVAGCVPQG-------- 137 (334)
Q Consensus 70 ~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~---a~~~~~~~i~~~k~~-~~~VVv~GC~a~~-------- 137 (334)
.|..|...|+..+.+.| ||-+.+-=-+-... ......+.++++++. ..+|.|||-.-+.
T Consensus 277 ~~~~dp~~~A~~~~~~G---------a~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~ 347 (555)
T 1jvn_A 277 RNLGKPVQLAQKYYQQG---------ADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKI 347 (555)
T ss_dssp --CHHHHHHHHHHHHTT---------CSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEE
T ss_pred eEcCCHHHHHHHHHHcC---------CCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccc
Q ss_pred -----ChhhhccCcc-EEEcCCChH---------------HHHHHHHHHhcCCceeecccccCCCCCCccccccceeeee
Q 019874 138 -----SRDLKELEGV-SIVGVQQID---------------RVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEIL 196 (334)
Q Consensus 138 -----~~~~~~~~~d-~vvG~~e~~---------------~i~e~l~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~v 196 (334)
..+.....+| +++|..... .+.+-+.+......+.+.-+........|...+... +
T Consensus 348 ~~~~~a~~~l~aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~---~ 424 (555)
T 1jvn_A 348 PALEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKV---F 424 (555)
T ss_dssp CHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCC---E
T ss_pred hHHHHHHHHHHcCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEcccccccccccccccc---c
Q ss_pred eccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCc
Q 019874 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST 276 (334)
Q Consensus 197 ~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~ 276 (334)
++...-+..=.||-...+...++..+--+.++.++.+.+.|+.+|.+++.+.. |.-.+.++ +|++++.+.. .+.
T Consensus 425 ~~~~~~~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t~~~~d--G~~~G~d~-~li~~l~~~~---~iP 498 (555)
T 1jvn_A 425 ETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKD--GSNSGYDL-ELIEHVKDAV---KIP 498 (555)
T ss_dssp ECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGT--TTCSCCCH-HHHHHHHHHC---SSC
T ss_pred cccccCCCCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCC--CCCCCCCH-HHHHHHHHhC---Ccc
Q ss_pred eE
Q 019874 277 ML 278 (334)
Q Consensus 277 ~i 278 (334)
.+
T Consensus 499 VI 500 (555)
T 1jvn_A 499 VI 500 (555)
T ss_dssp EE
T ss_pred EE
No 65
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=30.98 E-value=1.8e+02 Score=22.25 Aligned_cols=102 Identities=15% Similarity=0.072 Sum_probs=58.1
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeC--C---------CCCCcEEEEeecccccchHHHHHHHHHHHhcC---
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD--N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--- 124 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~--~---------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~--- 124 (334)
.+|.|+. -|....+.+...|+..||++.. + ....|+|+++.-.- .. ...++++++++.
T Consensus 8 ~~ILivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~-~~---~g~~~~~~lr~~~~~ 79 (154)
T 3gt7_A 8 GEILIVE----DSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMP-EM---DGYALCRWLKGQPDL 79 (154)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCS-SS---CHHHHHHHHHHSTTT
T ss_pred CcEEEEe----CCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCC-CC---CHHHHHHHHHhCCCc
Confidence 4555543 3677778888999999997642 1 24689999976432 21 133455555543
Q ss_pred -CCCEE-EEccccCCChhh-hccCcc-EEEcCCChHHHHHHHHHHhcC
Q 019874 125 -KKPLV-VAGCVPQGSRDL-KELEGV-SIVGVQQIDRVVEVVEETLKG 168 (334)
Q Consensus 125 -~~~VV-v~GC~a~~~~~~-~~~~~d-~vvG~~e~~~i~e~l~~~~~g 168 (334)
+.+|| +++......... ....++ .+.-+-....+.+.|+..+.+
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 80 RTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp TTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 44555 454321111111 123444 666677777888888776544
No 66
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=30.89 E-value=99 Score=27.97 Aligned_cols=82 Identities=11% Similarity=0.079 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCc--eEEEeecCCCChh-hhHHHHHH
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFIL-EHLKEIAE 297 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~--~ir~~~~~p~~i~-~~l~~l~~ 297 (334)
-+++.+++-++.+.+.|+.+|.|.| .+ |.-.+..+.+|++.+.+.+| +.. .+.++.=|=..+- -.. ++.
T Consensus 147 ~~~~~~~~~~~~~~~~G~~~i~l~D-T~---G~~~P~~v~~lv~~l~~~~~--~~~~~~l~~H~Hnd~Gla~AN~--laA 218 (293)
T 3ewb_X 147 SDRAFLIEAVQTAIDAGATVINIPD-TV---GYTNPTEFGQLFQDLRREIK--QFDDIIFASHCHDDLGMATANA--LAA 218 (293)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEEC-SS---SCCCHHHHHHHHHHHHHHCT--TGGGSEEEEECBCTTSCHHHHH--HHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecC-CC---CCCCHHHHHHHHHHHHHhcC--CccCceEEEEeCCCcChHHHHH--HHH
Confidence 5788899999999999999998854 22 33334567889999988776 432 3544322211111 111 333
Q ss_pred HHhCCCCCCeEEEccC
Q 019874 298 VLRHPCVYSFLHVPVQ 313 (334)
Q Consensus 298 l~~~~~g~~~l~igiQ 313 (334)
+. +|+.+++-.+=
T Consensus 219 ~~---aGa~~vd~sv~ 231 (293)
T 3ewb_X 219 IE---NGARRVEGTIN 231 (293)
T ss_dssp HH---TTCCEEEEBGG
T ss_pred HH---hCCCEEEeecc
Confidence 32 58888886654
No 67
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=30.77 E-value=1.6e+02 Score=21.80 Aligned_cols=106 Identities=12% Similarity=0.154 Sum_probs=59.9
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHh-CCCeeeCC-----------C-CCCcEEEEeecccccchHHHHHHHHHHHhc-
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDN-----------S-EEADIWLINTCTVKSPSQSAMDTLIAKCKS- 123 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~-~G~~~~~~-----------~-~~ADlviiNTCtv~~~a~~~~~~~i~~~k~- 123 (334)
+.+|.|+. -|....+.+...|+. .||+++.. . ...|+|++..-. +......++++++++
T Consensus 4 ~~~ilivd----d~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l---~~~~~g~~~~~~l~~~ 76 (140)
T 3lua_A 4 DGTVLLID----YFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAF---PVEKEGLEVLSAIRNN 76 (140)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCS---SSHHHHHHHHHHHHHS
T ss_pred CCeEEEEe----CCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCC---CCCCcHHHHHHHHHhC
Confidence 34555543 356667788889998 89987521 2 568999986432 202334556666665
Q ss_pred ---CCCCEE-EEccccCCChh-hhccCcc-EEEcCCChHHHHHHHHHHhcCCc
Q 019874 124 ---AKKPLV-VAGCVPQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLKGHE 170 (334)
Q Consensus 124 ---~~~~VV-v~GC~a~~~~~-~~~~~~d-~vvG~~e~~~i~e~l~~~~~g~~ 170 (334)
.+.+|| +++........ .....++ .+.-+-....+.+.|+..+.+..
T Consensus 77 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 77 SRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp GGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 245555 55432211111 1133445 56666666788888888776553
No 68
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=30.34 E-value=65 Score=29.03 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=46.0
Q ss_pred CChhHHHHHHHHHHhCCCeee--CC-------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 019874 70 HNQSDSEYMAGQLSAFGYALT--DN-------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (334)
Q Consensus 70 ~N~~Dse~m~~~L~~~G~~~~--~~-------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~ 131 (334)
-|.+=....+..|.+.|-..+ +. ...+|.++||.=+.+....+.+...++.+++.++|||+=
T Consensus 24 TN~V~~n~~AN~~La~GasP~M~~~~~e~~e~~~~a~alvIn~G~l~~~~~~~~~~a~~~a~~~~~PvVlD 94 (273)
T 3dzv_A 24 TNEITCESMANALLYIDAKPIMADDPREFPQMFQQTSALVLNLGHLSQEREQSLLAASDYARQVNKLTVVD 94 (273)
T ss_dssp CCTTTHHHHHHHHHHTTCEEECCCCGGGHHHHHTTCSEEEEECCSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCcchhhhHHHHHHHcCCchhhcCCHHHHHHHHHHCCeEEEecCCCChHHHHHHHHHHHHHHHcCCcEEEc
Confidence 377777788999999998775 22 245899999987765544456667777788888888864
No 69
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=30.29 E-value=2e+02 Score=27.01 Aligned_cols=99 Identities=15% Similarity=0.139 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCC-----------CC---------CCHHHHHHHHHHhCCCCCCceEEE
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-----------IG---------VNLPILLNAIVAELPPDGSTMLRI 280 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d-----------~~---------~~l~~Ll~~l~~~i~~~~~~~ir~ 280 (334)
.+++++.++++.+++.|++-+-+= ++.++.. .+ ....+.++++.+.++ ....+++
T Consensus 132 ~~~e~~~~~a~~~~~~G~~~~K~K---vG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G--~d~~l~v 206 (401)
T 3sbf_A 132 DTMEGIYDLVEGFLEKGYKHIRCQ---LGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYG--NQFHILH 206 (401)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEE---ESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHT--TSSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe---eccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcC--CCCEEEE
Confidence 478999999999999999988762 2222110 00 112456777766554 3456766
Q ss_pred eecCCC-ChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCC
Q 019874 281 GMTNPP-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIV 327 (334)
Q Consensus 281 ~~~~p~-~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~ 327 (334)
. .|-. ...+-+.-+..|.. .+..+|.=|+...+-+-++.+++..
T Consensus 207 D-an~~~~~~~A~~~~~~L~~--~~i~~iEqP~~~~~~~~~~~l~~~~ 251 (401)
T 3sbf_A 207 D-VHERLFPNQAIQFAKEVEQ--YKPYFIEDILPPNQTEWLDNIRSQS 251 (401)
T ss_dssp E-CTTCSCHHHHHHHHHHHGG--GCCSCEECSSCTTCGGGHHHHHTTC
T ss_pred E-CCCCCCHHHHHHHHHHHHh--cCCCEEECCCChhHHHHHHHHHhhC
Confidence 4 3332 22222221233332 4678899888777777777776654
No 70
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=30.05 E-value=1.6e+02 Score=21.37 Aligned_cols=92 Identities=10% Similarity=0.151 Sum_probs=49.8
Q ss_pred ChhHHHHHHHHHHhCCCeeeC--C---------CCCCcEEEEeecccccchHHHHHHHHHHHhcC-CCCEE-EEccccCC
Q 019874 71 NQSDSEYMAGQLSAFGYALTD--N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA-KKPLV-VAGCVPQG 137 (334)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~~~--~---------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~-~~~VV-v~GC~a~~ 137 (334)
+....+.+...|+..||++.. + ....|+|++.... -. ....+.++++++. +.+|| +++.....
T Consensus 11 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~-p~---~~g~~~~~~lr~~~~~~ii~~t~~~~~~ 86 (120)
T 3f6p_A 11 EKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIML-PN---KDGVEVCREVRKKYDMPIIMLTAKDSEI 86 (120)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTS-TT---THHHHHHHHHHTTCCSCEEEEEESSCHH
T ss_pred CHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCC-CC---CCHHHHHHHHHhcCCCCEEEEECCCChH
Confidence 445567778888888887642 1 2457999986532 11 1244556666543 34554 55532211
Q ss_pred Chhh-hccCcc-EEEcCCChHHHHHHHHHHh
Q 019874 138 SRDL-KELEGV-SIVGVQQIDRVVEVVEETL 166 (334)
Q Consensus 138 ~~~~-~~~~~d-~vvG~~e~~~i~e~l~~~~ 166 (334)
.... ....++ .+.-+-....+...++..+
T Consensus 87 ~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l 117 (120)
T 3f6p_A 87 DKVIGLEIGADDYVTKPFSTRELLARVKANL 117 (120)
T ss_dssp HHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 1111 123344 5666666666766666543
No 71
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=29.83 E-value=58 Score=25.42 Aligned_cols=62 Identities=23% Similarity=0.329 Sum_probs=33.9
Q ss_pred HHHHHH----HHHhCCCee--e-------CCCCC-CcEEEEeeccc-ccc--hHHHHHHHHHHHhc---CCCCEEEEccc
Q 019874 75 SEYMAG----QLSAFGYAL--T-------DNSEE-ADIWLINTCTV-KSP--SQSAMDTLIAKCKS---AKKPLVVAGCV 134 (334)
Q Consensus 75 se~m~~----~L~~~G~~~--~-------~~~~~-ADlviiNTCtv-~~~--a~~~~~~~i~~~k~---~~~~VVv~GC~ 134 (334)
++.|+. .|.+.|+++ . ++..+ +|.|++-|.+. ... ....+...++++.. .++++.+-|+.
T Consensus 14 t~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~~~l~~k~~~v~~~g 93 (147)
T 1f4p_A 14 TEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGCG 93 (147)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGGSCCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCeeEEEehhhCCHHHhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHhcccCCCEEEEEeec
Confidence 555554 455567654 1 12356 99999987765 222 11234555665543 35666666664
Q ss_pred cC
Q 019874 135 PQ 136 (334)
Q Consensus 135 a~ 136 (334)
.+
T Consensus 94 ~~ 95 (147)
T 1f4p_A 94 DS 95 (147)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 72
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=29.51 E-value=81 Score=24.53 Aligned_cols=71 Identities=11% Similarity=0.194 Sum_probs=52.3
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeeccccc---chHHHHHHHHHHHhcCCCCEEEEccccC
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS---PSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~---~a~~~~~~~i~~~k~~~~~VVv~GC~a~ 136 (334)
.+.++.+.-++...-++.+...|... ..+...|||+--.|.. .+-.-+..+.++++++|..+++.|+.++
T Consensus 23 ~i~v~~l~G~L~f~~a~~~~~~l~~~-------~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 95 (135)
T 4dgf_A 23 GVEIYEINGPFFFGVADRLKGVLDVI-------EETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSDR 95 (135)
T ss_dssp TEEEEECCSSBSHHHHHHHTTGGGGC-------SSCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCCHH
T ss_pred CEEEEEeeceEEehhHHHHHHHHHHh-------cCCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 57788888899999999998888643 1456788888766654 2344556666788888999999998654
Q ss_pred C
Q 019874 137 G 137 (334)
Q Consensus 137 ~ 137 (334)
.
T Consensus 96 v 96 (135)
T 4dgf_A 96 L 96 (135)
T ss_dssp H
T ss_pred H
Confidence 3
No 73
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=29.13 E-value=1.7e+02 Score=21.33 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=53.2
Q ss_pred ChhHHHHHHHHHHhCCCeeeCC-----------CC-CCcEEEEeecccccchHHHHHHHHHHHhcC--CCCEEEEccccC
Q 019874 71 NQSDSEYMAGQLSAFGYALTDN-----------SE-EADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQ 136 (334)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~~~~-----------~~-~ADlviiNTCtv~~~a~~~~~~~i~~~k~~--~~~VVv~GC~a~ 136 (334)
|....+.+...|...||++... .. ..|+|+++.-.-.... ..+.++++++. +.+||+-.-...
T Consensus 14 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~---g~~~~~~l~~~~~~~~ii~~s~~~~ 90 (132)
T 2rdm_A 14 EAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPD---GWQVARVAREIDPNMPIVYISGHAA 90 (132)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSC---HHHHHHHHHHHCTTCCEEEEESSCC
T ss_pred cHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCC---HHHHHHHHHhcCCCCCEEEEeCCcc
Confidence 5566778888898889976421 22 6899999754321011 23344444432 456554332222
Q ss_pred CChhhhccC-ccEEEcCCChHHHHHHHHHHhcCC
Q 019874 137 GSRDLKELE-GVSIVGVQQIDRVVEVVEETLKGH 169 (334)
Q Consensus 137 ~~~~~~~~~-~d~vvG~~e~~~i~e~l~~~~~g~ 169 (334)
......... .+.+.-+-....+...|+....+.
T Consensus 91 ~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 91 LEWASNGVPDSIILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp TTHHHHSCTTCEEEESSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCcceEeCCCCHHHHHHHHHHHHhcC
Confidence 221112222 246666777778888888766554
No 74
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=28.71 E-value=1.8e+02 Score=21.46 Aligned_cols=101 Identities=13% Similarity=0.207 Sum_probs=55.8
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeC---C---------CCCCcEEEEeecccccchHHHHHHHHHHHhcCC
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD---N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~---~---------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~ 125 (334)
+.+|.++. -+....+.+...|+..||+++. + ....|+|+++...-.......+.+.+++. .+
T Consensus 9 ~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~--~~ 82 (140)
T 3cg0_A 9 LPGVLIVE----DGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG--CN 82 (140)
T ss_dssp CCEEEEEC----CBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH--SC
T ss_pred CceEEEEE----CCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC--CC
Confidence 34565553 3566678888899988998752 2 12579999975432111112233334433 45
Q ss_pred CCEE-EEccccCCChhh----hccCcc-EEEcCCChHHHHHHHHHHhc
Q 019874 126 KPLV-VAGCVPQGSRDL----KELEGV-SIVGVQQIDRVVEVVEETLK 167 (334)
Q Consensus 126 ~~VV-v~GC~a~~~~~~----~~~~~d-~vvG~~e~~~i~e~l~~~~~ 167 (334)
.+|| +++- . ..+. ....++ .+.-+-....+...|+..+.
T Consensus 83 ~~ii~ls~~-~--~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 83 LPIIFITSS-Q--DVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp CCEEEEECC-C--CHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCEEEEecC-C--CHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 5655 4442 2 2221 123444 56666666777777776553
No 75
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=28.51 E-value=1.8e+02 Score=21.44 Aligned_cols=96 Identities=9% Similarity=-0.006 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHHHhCCCeeeC--C---------CCCCcEEEEeecccc----cchHHHHHHHHHHHhc--CCCCEE-EEc
Q 019874 71 NQSDSEYMAGQLSAFGYALTD--N---------SEEADIWLINTCTVK----SPSQSAMDTLIAKCKS--AKKPLV-VAG 132 (334)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~~~--~---------~~~ADlviiNTCtv~----~~a~~~~~~~i~~~k~--~~~~VV-v~G 132 (334)
|....+.+...|+..||++.. + ....|+|+++...-. .. ...+.++++++ .+.+|| +++
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~---~g~~~~~~l~~~~~~~~ii~ls~ 88 (140)
T 2qr3_A 12 NKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGN---EGLFWLHEIKRQYRDLPVVLFTA 88 (140)
T ss_dssp CHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----C---CHHHHHHHHHHHCTTCCEEEEEE
T ss_pred CHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCc---cHHHHHHHHHhhCcCCCEEEEEC
Confidence 555667788888888887642 1 134799999754210 11 12334444443 245555 544
Q ss_pred cccCCChh-hhccCcc-EEEcCCChHHHHHHHHHHhcCC
Q 019874 133 CVPQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLKGH 169 (334)
Q Consensus 133 C~a~~~~~-~~~~~~d-~vvG~~e~~~i~e~l~~~~~g~ 169 (334)
........ .....++ .+.-+-....+.+.|.....+.
T Consensus 89 ~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 89 YADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp GGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 32110111 1123444 5666667778888888776654
No 76
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=28.28 E-value=1.8e+02 Score=21.95 Aligned_cols=70 Identities=13% Similarity=-0.002 Sum_probs=50.5
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeeccccc---chHHHHHHHHHHHhcCCCCEEEEccccC
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS---PSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~---~a~~~~~~~i~~~k~~~~~VVv~GC~a~ 136 (334)
.+.++.+.=++...-++.+...+.+.- ++...||++-..|.. .+-.-+..+.+++++ |..+++.|+.++
T Consensus 17 ~v~v~~l~G~L~f~~a~~l~~~l~~~~-------~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~~~~~ 88 (118)
T 3ny7_A 17 DVLVLRVIGPLFFAAAEGLFTDLESRL-------EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCNVEFQ 88 (118)
T ss_dssp TEEEEEEESCBCHHHHHHHHHHHHTTC-------TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEECCCHH
T ss_pred CEEEEEEeceeEehhHHHHHHHHHHhc-------CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEecCCHH
Confidence 466666767999999999999887531 345778888766654 234455666778888 999999998654
Q ss_pred C
Q 019874 137 G 137 (334)
Q Consensus 137 ~ 137 (334)
.
T Consensus 89 v 89 (118)
T 3ny7_A 89 P 89 (118)
T ss_dssp H
T ss_pred H
Confidence 3
No 77
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=28.13 E-value=79 Score=28.25 Aligned_cols=76 Identities=8% Similarity=0.171 Sum_probs=43.0
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeee--C--C-------CCCCcEEEEeecccccchHHHHHHHHHHHhcCCC
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT--D--N-------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK 126 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~--~--~-------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~ 126 (334)
|+++=|+. | ..=......+.+.|++.||++. + + ..+.|+||+....-..-. ....+.++++-+.|.
T Consensus 4 m~~vLiV~-g-~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~~~l~-~~~~~~L~~yV~~GG 80 (259)
T 3rht_A 4 MTRVLYCG-D-TSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAERMT-AQAIDQLVTMVKAGC 80 (259)
T ss_dssp --CEEEEE-S-SCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCGGGBC-HHHHHHHHHHHHTTC
T ss_pred CceEEEEC-C-CCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCccccCC-HHHHHHHHHHHHhCC
Confidence 55666662 2 1113456889999999999774 1 1 136899988633211112 234445666655665
Q ss_pred -CEEEEccccC
Q 019874 127 -PLVVAGCVPQ 136 (334)
Q Consensus 127 -~VVv~GC~a~ 136 (334)
-|++||..+.
T Consensus 81 gLi~~gG~~s~ 91 (259)
T 3rht_A 81 GLVMLGGWESY 91 (259)
T ss_dssp EEEEECSTTSS
T ss_pred eEEEecCcccc
Confidence 5667776543
No 78
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=27.38 E-value=1.4e+02 Score=22.25 Aligned_cols=102 Identities=9% Similarity=0.070 Sum_probs=56.5
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeC--C---------CCCCcEEEEeecccccchHHHHHHHHHHHhc----
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD--N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS---- 123 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~--~---------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~---- 123 (334)
.+|.|+. -|....+.+...|+..||++.. + ....|+|+++.-. ... ...+.++++++
T Consensus 7 ~~iLivd----d~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~---~g~~~~~~l~~~~~~ 78 (140)
T 3grc_A 7 PRILICE----DDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNL-PDQ---DGVSLIRALRRDSRT 78 (140)
T ss_dssp SEEEEEC----SCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCC-SSS---CHHHHHHHHHTSGGG
T ss_pred CCEEEEc----CCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCC---CHHHHHHHHHhCccc
Confidence 4555543 3667778888999999997642 2 2357999996532 221 23445555554
Q ss_pred CCCCEEE-EccccCCChhhh--ccCcc-EEEcCCChHHHHHHHHHHhcC
Q 019874 124 AKKPLVV-AGCVPQGSRDLK--ELEGV-SIVGVQQIDRVVEVVEETLKG 168 (334)
Q Consensus 124 ~~~~VVv-~GC~a~~~~~~~--~~~~d-~vvG~~e~~~i~e~l~~~~~g 168 (334)
.+.+||+ ++.......... ...++ .+.-+-....+...|+..+.+
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 79 RDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp TTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 2455554 432211111101 22344 566666777787777766543
No 79
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=27.15 E-value=66 Score=27.24 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=51.7
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccCCC
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS 138 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~~~ 138 (334)
.++.+++|+=..+. .+.+...| |+ |+... ++.+. +.+...++++++.|..+||||-++...
T Consensus 95 ~kIavvg~~~~~~~--~~~~~~ll---~~---------~i~~~---~~~~~--~e~~~~i~~l~~~G~~vvVG~~~~~~~ 155 (196)
T 2q5c_A 95 NELALIAYKHSIVD--KHEIEAML---GV---------KIKEF---LFSSE--DEITTLISKVKTENIKIVVSGKTVTDE 155 (196)
T ss_dssp SEEEEEEESSCSSC--HHHHHHHH---TC---------EEEEE---EECSG--GGHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred CcEEEEeCcchhhH--HHHHHHHh---CC---------ceEEE---EeCCH--HHHHHHHHHHHHCCCeEEECCHHHHHH
Confidence 48899988644443 34555555 22 33322 44433 346678999999999999998766333
Q ss_pred hhhhccCccEEEcCCChHHHHHHHHHH
Q 019874 139 RDLKELEGVSIVGVQQIDRVVEVVEET 165 (334)
Q Consensus 139 ~~~~~~~~d~vvG~~e~~~i~e~l~~~ 165 (334)
.+ +.....++-....+.+.+.++++
T Consensus 156 A~--~~Gl~~vli~sg~eSI~~Ai~eA 180 (196)
T 2q5c_A 156 AI--KQGLYGETINSGEESLRRAIEEA 180 (196)
T ss_dssp HH--HTTCEEEECCCCHHHHHHHHHHH
T ss_pred HH--HcCCcEEEEecCHHHHHHHHHHH
Confidence 32 22233444444457788888764
No 80
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=26.17 E-value=3.5e+02 Score=25.15 Aligned_cols=96 Identities=10% Similarity=0.060 Sum_probs=58.5
Q ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCC-ChhhhHHHHHHH
Q 019874 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKEIAEV 298 (334)
Q Consensus 220 sr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~-~i~~~l~~l~~l 298 (334)
..+++++.++++.+++.|++.|-+= + |.+. ..-.+.++++.+.++ ....+++. .|-. ...+-+.-+..+
T Consensus 149 ~~~~e~~~~~a~~~~~~G~~~iKiK---v---G~~~-~~d~~~v~avR~a~g--~d~~l~vD-an~~~~~~~A~~~~~~l 218 (389)
T 3ozy_A 149 DLTPDQAADELAGWVEQGFTAAKLK---V---GRAP-RKDAANLRAMRQRVG--ADVEILVD-ANQSLGRHDALAMLRIL 218 (389)
T ss_dssp SCCHHHHHHHHHHHHHTTCSEEEEE---C---CSCH-HHHHHHHHHHHHHHC--TTSEEEEE-CTTCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEeec---c---CCCH-HHHHHHHHHHHHHcC--CCceEEEE-CCCCcCHHHHHHHHHHH
Confidence 3578999999999999999988772 2 2121 123466777766553 34566664 3322 222222212333
Q ss_pred HhCCCCCCeEEEccCCcCHHHHHHhC-CCC
Q 019874 299 LRHPCVYSFLHVPVQSGSDAVLSVSQ-KIV 327 (334)
Q Consensus 299 ~~~~~g~~~l~igiQSgsd~vLk~M~-R~~ 327 (334)
.. .+..+|.=|+...+-+-++..+ +..
T Consensus 219 ~~--~~i~~iEqP~~~~d~~~~~~l~~~~~ 246 (389)
T 3ozy_A 219 DE--AGCYWFEEPLSIDDIEGHRILRAQGT 246 (389)
T ss_dssp HH--TTCSEEESCSCTTCHHHHHHHHTTCC
T ss_pred Hh--cCCCEEECCCCcccHHHHHHHHhcCC
Confidence 33 3678899888777777777776 543
No 81
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=25.57 E-value=1.4e+02 Score=25.38 Aligned_cols=70 Identities=11% Similarity=0.174 Sum_probs=46.0
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCCCeee--CC----------CCCCcEEEEeecccccchHHHHHHHHHHHhc--
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DN----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS-- 123 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~--~~----------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~-- 123 (334)
.++|+| +||.....-...++..|...|+... .+ ..+-|++|+-|-+ ... ..+.+.++.+++
T Consensus 59 a~~I~i--~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~S--G~t-~~~i~~~~~ak~~~ 133 (220)
T 3etn_A 59 KGKLVT--SGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNS--GKT-REIVELTQLAHNLN 133 (220)
T ss_dssp CCCEEE--ECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSS--SCC-HHHHHHHHHHHHHC
T ss_pred CCEEEE--EEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCC--CCC-HHHHHHHHHHHhcC
Confidence 345665 5666666677788888888887542 11 2345888775544 233 457788899999
Q ss_pred CCCCEE-EEc
Q 019874 124 AKKPLV-VAG 132 (334)
Q Consensus 124 ~~~~VV-v~G 132 (334)
+|.+|| +|+
T Consensus 134 ~Ga~vI~IT~ 143 (220)
T 3etn_A 134 PGLKFIVITG 143 (220)
T ss_dssp TTCEEEEEES
T ss_pred CCCeEEEEEC
Confidence 998766 554
No 82
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=25.55 E-value=1.4e+02 Score=27.89 Aligned_cols=76 Identities=16% Similarity=0.077 Sum_probs=46.6
Q ss_pred eeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCC-----CCCC---CCCCCHHHHH
Q 019874 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG-----AYGR---DIGVNLPILL 263 (334)
Q Consensus 192 ~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~-----~yg~---d~~~~l~~Ll 263 (334)
++..|-+.+|=.-. =-++..-|- ...+++.+++|++.+++.|++-|.|+|.-.. ..|. +...-+..-+
T Consensus 41 LI~PlFV~eg~~~~---~~I~SMPGv-~r~sid~l~~~~~~~~~lGi~~v~LFgv~~~~~~KD~~gs~A~~~~g~v~rai 116 (342)
T 1h7n_A 41 LIFPLFISDNPDDF---TEIDSLPNI-NRIGVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGI 116 (342)
T ss_dssp EEEEEEEESSTTCE---EECTTSTTC-EEECHHHHHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGGGGCTTSHHHHHH
T ss_pred ceeeEEEecCCCCc---eeCCCCCCc-eeeCHHHHHHHHHHHHHCCCCEEEEecccCccCCCCccccccCCCCChHHHHH
Confidence 33444555553322 124445454 3468999999999999999999999886211 1111 1112355677
Q ss_pred HHHHHhCC
Q 019874 264 NAIVAELP 271 (334)
Q Consensus 264 ~~l~~~i~ 271 (334)
+.|.+.+|
T Consensus 117 r~iK~~~p 124 (342)
T 1h7n_A 117 KFIREYFP 124 (342)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHCC
Confidence 88877776
No 83
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=25.49 E-value=2e+02 Score=21.11 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=49.7
Q ss_pred ChhHHHHHHHHHHhCCCeeeC--C---------CCCCcEEEEeecccccchHHHHHHHHHHHhc--CCCCE-EEEccccC
Q 019874 71 NQSDSEYMAGQLSAFGYALTD--N---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPL-VVAGCVPQ 136 (334)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~~~--~---------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~--~~~~V-Vv~GC~a~ 136 (334)
+....+.+...|+..||++.. + ....|+|+++...-... ..+.++++++ .+.+| ++++....
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~----g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (132)
T 3crn_A 12 DTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDME----GTELLEKAHKLRPGMKKIMVTGYASL 87 (132)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSB----HHHHHHHHHHHCTTSEEEEEESCCCH
T ss_pred CHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCc----hHHHHHHHHhhCCCCcEEEEeccccH
Confidence 455667788888888887642 1 13579999875432112 2234444443 24454 45554221
Q ss_pred CChhh-hccCcc-EEEcCCChHHHHHHHHHHh
Q 019874 137 GSRDL-KELEGV-SIVGVQQIDRVVEVVEETL 166 (334)
Q Consensus 137 ~~~~~-~~~~~d-~vvG~~e~~~i~e~l~~~~ 166 (334)
..... ....++ .+.-+-....+.+.|+..+
T Consensus 88 ~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 119 (132)
T 3crn_A 88 ENSVFSLNAGADAYIMKPVNPRDLLEKIKEKL 119 (132)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhccCCCCHHHHHHHHHHHH
Confidence 11111 123444 5666777777777776654
No 84
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=25.22 E-value=2.2e+02 Score=22.65 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCCee--eCCC-----------CCCcEEEEeecccccchHHHHHHHHHHHh---cCCCCEEEEccccC
Q 019874 76 EYMAGQLSAFGYAL--TDNS-----------EEADIWLINTCTVKSPSQSAMDTLIAKCK---SAKKPLVVAGCVPQ 136 (334)
Q Consensus 76 e~m~~~L~~~G~~~--~~~~-----------~~ADlviiNTCtv~~~a~~~~~~~i~~~k---~~~~~VVv~GC~a~ 136 (334)
+.|+..|.+.|.++ .+-. .++|.|+|-|.|.-... .. ...+.++. -.|+++++=|++.+
T Consensus 19 ~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~g~~-p~-~~fl~~l~~~~l~gk~v~~fgs~g~ 93 (161)
T 3hly_A 19 QAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTPPSQPSE-AV-ATALSTIFAAAHNKQAIGLFDSYGG 93 (161)
T ss_dssp HHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEECCBSSCCH-HH-HHHHHHHHHHCCTTSEEEEECCCCS
T ss_pred HHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEcCCcCCch-hH-HHHHHHHHhhhhCCCEEEEEEcCCC
Confidence 34555666677643 2211 25899999887764332 21 33444443 35677777777654
No 85
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=24.78 E-value=3.8e+02 Score=24.29 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=32.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHH
Q 019874 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268 (334)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~ 268 (334)
+.++.+++.+.+..+.+.|++.|..+..|....+.....+-.+|++.|.+
T Consensus 92 ~~~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~ 141 (304)
T 3fst_A 92 IDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKE 141 (304)
T ss_dssp TTSCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHH
Confidence 34788999999999999999998866444332221111356688887765
No 86
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=24.51 E-value=3.1e+02 Score=23.55 Aligned_cols=91 Identities=16% Similarity=0.053 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHh
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~ 300 (334)
.++.++++ .+.+.|+..|.+++.+.. |...+. ..++++++.+.. +..-+.-++++.. ++ +..+++
T Consensus 30 ~~~~~~a~---~~~~~Ga~~i~v~d~~~~--~~~~g~-~~~~i~~i~~~~---~iPvi~~ggi~~~---~~---i~~~~~ 94 (266)
T 2w6r_A 30 ILLRDWVV---EVEKRGAGEILLTSIDRD--GTKSGY-DTEMIRFVRPLT---TLPIIASGGAGKM---EH---FLEAFL 94 (266)
T ss_dssp EEHHHHHH---HHHHHTCSEEEEEETTTS--SCSSCC-CHHHHHHHGGGC---CSCEEEESCCCST---HH---HHHHHH
T ss_pred CCHHHHHH---HHHHCCCCEEEEEecCcc--cCCCcc-cHHHHHHHHHhc---CCCEEEECCCCCH---HH---HHHHHH
Confidence 34555544 445679999999875532 222223 358888887643 3444444444431 22 333333
Q ss_pred CCCCCCeEEEccCCc----CHHHHHHhCCCCC
Q 019874 301 HPCVYSFLHVPVQSG----SDAVLSVSQKIVP 328 (334)
Q Consensus 301 ~~~g~~~l~igiQSg----sd~vLk~M~R~~t 328 (334)
.|+..+++|-... +++.++.+-+.+.
T Consensus 95 --~Gad~v~lg~~~~~~~~~~~~~~~~~~~~g 124 (266)
T 2w6r_A 95 --AGADKALAASVFHFREIDMRELKEYLKKHG 124 (266)
T ss_dssp --HTCSEEECCCCC------CHHHHHHCC---
T ss_pred --cCCcHhhhhHHHHhCCCCHHHHHHHHHHcC
Confidence 3688999997766 6777888766543
No 87
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A
Probab=24.37 E-value=1.9e+02 Score=25.52 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=37.6
Q ss_pred EEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 019874 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (334)
Q Consensus 62 ~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~ 131 (334)
.+...|..+...|.+.+...+.+. ..++|+++++.........+.+..+++.+++.|.+|++=
T Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D 169 (320)
T 3ie7_A 107 MIPEAGFTVSQTNKDNLLKQIAKK-------VKKEDMVVIAGSPPPHYTLSDFKELLRTVKATGAFLGCD 169 (320)
T ss_dssp EEECCCCCCCHHHHHHHHHHHHHH-------CCTTCEEEEESCCCTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHH-------hcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCEEEEE
Confidence 455667666666665555554332 357999999543221222345666777787778777653
No 88
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=24.08 E-value=1.7e+02 Score=24.23 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=40.9
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeee-----CCCCCCcEEEEeecccccchH-----HHHHHHHHHHhcCCCCE
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-----DNSEEADIWLINTCTVKSPSQ-----SAMDTLIAKCKSAKKPL 128 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~-----~~~~~ADlviiNTCtv~~~a~-----~~~~~~i~~~k~~~~~V 128 (334)
++|.|..+|. ... ..+...|++.|++++ ++.+++|.++|.--.-..... ....+.++++.+.+++
T Consensus 3 ~~I~iid~~~--~~~--~~~~~~l~~~G~~~~~~~~~~~l~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~P- 77 (200)
T 1ka9_H 3 MKALLIDYGS--GNL--RSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLP- 77 (200)
T ss_dssp CEEEEECSSC--SCH--HHHHHHHHHTTCEEEEESSTTSCSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCC-
T ss_pred cEEEEEeCCC--ccH--HHHHHHHHHCCCeEEEecChHHcccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCe-
Confidence 5788887763 222 336788899998664 234568999994311111110 1134566666566665
Q ss_pred EEEcccc
Q 019874 129 VVAGCVP 135 (334)
Q Consensus 129 Vv~GC~a 135 (334)
|+|=|+.
T Consensus 78 ilGIC~G 84 (200)
T 1ka9_H 78 FLGICVG 84 (200)
T ss_dssp EEECTHH
T ss_pred EEEEcHH
Confidence 4455754
No 89
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=23.66 E-value=58 Score=25.58 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCeee-------CCCCCCcEEEEeeccc-ccchHHHHHHHHHHHh-----cCCCCEEEEcccc
Q 019874 75 SEYMAGQLSAFGYALT-------DNSEEADIWLINTCTV-KSPSQSAMDTLIAKCK-----SAKKPLVVAGCVP 135 (334)
Q Consensus 75 se~m~~~L~~~G~~~~-------~~~~~ADlviiNTCtv-~~~a~~~~~~~i~~~k-----~~~~~VVv~GC~a 135 (334)
.+.|+..|.+.|+++. ++..++|+|++-|.|. .......+...++.+. -.++++.|-||..
T Consensus 19 A~~ia~~l~~~g~~v~~~~~~~~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~~~l~~~~~avfg~G~ 92 (147)
T 2hna_A 19 AEHLAEKLEEAGFTTETLHGPLLEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFGAIGIGS 92 (147)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHHCCCTTEEEEEEESCCH
T ss_pred HHHHHHHHHHCCCceEEecCCCHHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhhccccCCCEEEEEeccc
Confidence 3566677777777542 2234689999987775 3221112223333332 1245666767643
No 90
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=23.24 E-value=99 Score=25.99 Aligned_cols=70 Identities=10% Similarity=0.052 Sum_probs=42.2
Q ss_pred EEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEEccccC
Q 019874 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQ 136 (334)
Q Consensus 63 i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~GC~a~ 136 (334)
++.++-..+...++.+..+|.... .++..++=++.|||-+=.-.+-..+++.++.++. .+.++++|-.++
T Consensus 28 ii~l~g~I~~~~a~~i~~~L~~l~---~~~~~~~I~l~InSPGG~v~a~~~I~~~i~~~~~-pV~~~v~g~AaS 97 (193)
T 1yg6_A 28 VIFLTGQVEDHMANLIVAQMLFLE---AENPEKDIYLYINSPGGVITAGMSIYDTMQFIKP-DVSTICMGQAAS 97 (193)
T ss_dssp EEEEESSBCHHHHHHHHHHHHHHH---HHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSS-CEEEEEEEEEET
T ss_pred EEEEcCEEcHHHHHHHHHHHHHHH---hcCCCCCEEEEEECcCCCHHHHHHHHHHHHhcCC-CEEEEEeeeHHH
Confidence 455778999999999999987542 1222344466789986322233456666665542 233456665554
No 91
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=23.07 E-value=3.9e+02 Score=23.73 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCC-hhhhHHHHHHHH
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF-ILEHLKEIAEVL 299 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~-i~~~l~~l~~l~ 299 (334)
.+++.+++-++.+.+.|+..|.|.+. + |.-.+..+.+|++.+.+.+| + ..+.++ .|.+. +-- ...+..+.
T Consensus 153 ~~~~~~~~~~~~~~~~Ga~~i~l~DT-~---G~~~P~~~~~lv~~l~~~~~--~-~~i~~H-~Hn~~Gla~-An~laA~~ 223 (298)
T 2cw6_A 153 ISPAKVAEVTKKFYSMGCYEISLGDT-I---GVGTPGIMKDMLSAVMQEVP--L-AALAVH-CHDTYGQAL-ANTLMALQ 223 (298)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEET-T---SCCCHHHHHHHHHHHHHHSC--G-GGEEEE-EBCTTSCHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCC-C---CCcCHHHHHHHHHHHHHhCC--C-CeEEEE-ECCCCchHH-HHHHHHHH
Confidence 47899999999999999999998642 2 33234567889999987764 2 345554 33331 110 01134333
Q ss_pred hCCCCCCeEEEccC
Q 019874 300 RHPCVYSFLHVPVQ 313 (334)
Q Consensus 300 ~~~~g~~~l~igiQ 313 (334)
+|+.+++..+=
T Consensus 224 ---aGa~~vd~tv~ 234 (298)
T 2cw6_A 224 ---MGVSVVDSSVA 234 (298)
T ss_dssp ---TTCCEEEEBTT
T ss_pred ---hCCCEEEeecc
Confidence 58888887654
No 92
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=23.06 E-value=87 Score=29.39 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=49.3
Q ss_pred ceeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeeccCC----CCCCCC--CCC-HHHHH
Q 019874 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG----AYGRDI--GVN-LPILL 263 (334)
Q Consensus 191 ~~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~----~yg~d~--~~~-l~~Ll 263 (334)
.++..|-+..| ... --|+..-|-+| .+++.+++|++.+++.|++-|.|+|.--. ..|..- ... +..-+
T Consensus 45 dLI~PlFV~eg-~~~---~~I~SMPGv~r-~sid~l~~~~~~~~~lGi~av~LFgv~~p~~KD~~gs~A~~~~g~v~rAi 119 (356)
T 3obk_A 45 SLIYPLFVHDE-ETS---VPIPSMPGQSR-LSMEDLLKEVGEARSYGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAI 119 (356)
T ss_dssp GEEEEEEEESS-SSC---EECTTSTTCEE-ECHHHHHHHHHHHHHTTCCEEEEEEECCGGGCBSSCGGGGCTTSHHHHHH
T ss_pred HceeeEEEecC-CCC---cccCCCCCceE-ECHHHHHHHHHHHHHCCCCEEEEecCCCcccCCcccccccCCCChHHHHH
Confidence 34556667777 332 25666667655 58999999999999999999999985110 111110 122 44567
Q ss_pred HHHHHhCC
Q 019874 264 NAIVAELP 271 (334)
Q Consensus 264 ~~l~~~i~ 271 (334)
+.|.+.+|
T Consensus 120 r~iK~~~P 127 (356)
T 3obk_A 120 MALKEAFP 127 (356)
T ss_dssp HHHHHHST
T ss_pred HHHHHHCC
Confidence 77777776
No 93
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=22.81 E-value=1.2e+02 Score=25.02 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=43.8
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeC------------CCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCC
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP 127 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~------------~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~ 127 (334)
+|+| +||.....-...+...|...|....- ...+-|++|+-|-+ ... ....+.++.++++|.+
T Consensus 47 ~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS~s--G~t-~~~~~~~~~ak~~g~~ 121 (201)
T 3fxa_A 47 KIVV--AGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKG--GNT-GELLNLIPACKTKGST 121 (201)
T ss_dssp CEEE--ECCTHHHHHHHHHHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEEECSS--SCC-HHHHTTHHHHHHHTCE
T ss_pred cEEE--EEecHHHHHHHHHHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEEEeCC--CCC-HHHHHHHHHHHHcCCe
Confidence 5555 56666666777788888888875431 12345888775543 333 3466778888888987
Q ss_pred EE-EEc
Q 019874 128 LV-VAG 132 (334)
Q Consensus 128 VV-v~G 132 (334)
|| +|+
T Consensus 122 vi~IT~ 127 (201)
T 3fxa_A 122 LIGVTE 127 (201)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 66 554
No 94
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=22.81 E-value=3e+02 Score=23.64 Aligned_cols=85 Identities=11% Similarity=0.125 Sum_probs=52.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHH
Q 019874 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (334)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l 298 (334)
|..++++.++-++.+++.|++-|.++-.+ ..-.+.++++.+.++ . ..+..+. +. .+++. +..
T Consensus 24 r~~~~~~~~~~~~al~~gGv~~iel~~k~---------~~~~~~i~~l~~~~~--~-l~vgaGt--vl-~~d~~---~~A 85 (224)
T 1vhc_A 24 ALDNADDILPLADTLAKNGLSVAEITFRS---------EAAADAIRLLRANRP--D-FLIAAGT--VL-TAEQV---VLA 85 (224)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEETTS---------TTHHHHHHHHHHHCT--T-CEEEEES--CC-SHHHH---HHH
T ss_pred eCCCHHHHHHHHHHHHHcCCCEEEEeccC---------chHHHHHHHHHHhCc--C-cEEeeCc--Ee-eHHHH---HHH
Confidence 33567888888899999999988885211 234578888887765 3 2333332 32 33333 333
Q ss_pred HhCCCCCCeEEEccCCcCHHHHHHhCC
Q 019874 299 LRHPCVYSFLHVPVQSGSDAVLSVSQK 325 (334)
Q Consensus 299 ~~~~~g~~~l~igiQSgsd~vLk~M~R 325 (334)
.+ .|..++|.| | .+.++++..++
T Consensus 86 ~~--aGAd~v~~p-~-~d~~v~~~ar~ 108 (224)
T 1vhc_A 86 KS--SGADFVVTP-G-LNPKIVKLCQD 108 (224)
T ss_dssp HH--HTCSEEECS-S-CCHHHHHHHHH
T ss_pred HH--CCCCEEEEC-C-CCHHHHHHHHH
Confidence 33 367899999 3 56666555444
No 95
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=22.79 E-value=1.1e+02 Score=25.32 Aligned_cols=73 Identities=11% Similarity=0.111 Sum_probs=43.0
Q ss_pred CCceEEEEeeCCC-CChhH-------HHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCE
Q 019874 57 GTETIYMKTFGCS-HNQSD-------SEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPL 128 (334)
Q Consensus 57 ~~~~~~i~t~GC~-~N~~D-------se~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~V 128 (334)
...+|||-|-|+. +|.+= .+.+...|...|-+++++.+.-=-+||++=++.....-..-+++.++++.|.+|
T Consensus 23 r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~~~mKI 102 (151)
T 3oq0_A 23 RDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKV 102 (151)
T ss_dssp CCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEE
T ss_pred cCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCee
Confidence 4568999999985 44332 256667778899999988664333446544433211111123556666666555
Q ss_pred E
Q 019874 129 V 129 (334)
Q Consensus 129 V 129 (334)
-
T Consensus 103 W 103 (151)
T 3oq0_A 103 W 103 (151)
T ss_dssp E
T ss_pred e
Confidence 3
No 96
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=22.76 E-value=52 Score=27.18 Aligned_cols=73 Identities=11% Similarity=-0.020 Sum_probs=40.2
Q ss_pred CceEEEEeeCCCCChhHHHHHHHH----HHh-CCCee--eC--C-----CCCCcEEEEeecccccchHHHHHHHHHHHhc
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQ----LSA-FGYAL--TD--N-----SEEADIWLINTCTVKSPSQSAMDTLIAKCKS 123 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~----L~~-~G~~~--~~--~-----~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~ 123 (334)
|+++.|+..- + ..-++.|+.. |.+ .|+++ .+ + ..+||.||+-|-+.-......+...++++..
T Consensus 4 M~kiliiy~S--~-~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~ 80 (188)
T 2ark_A 4 MGKVLVIYDT--R-TGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLG 80 (188)
T ss_dssp CEEEEEEECC--S-SSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGG
T ss_pred CCEEEEEEEC--C-CcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhh
Confidence 4567666432 2 3445555554 444 66644 21 1 2368999998877644333346666776643
Q ss_pred ------CCCCEEEEcc
Q 019874 124 ------AKKPLVVAGC 133 (334)
Q Consensus 124 ------~~~~VVv~GC 133 (334)
+|+++++-|+
T Consensus 81 ~~~~~l~gk~~~~~~t 96 (188)
T 2ark_A 81 DLWGEIDGKIACAFSS 96 (188)
T ss_dssp GTTTSCTTCEEEEEEE
T ss_pred hhHHHhCCCeEEEEEE
Confidence 3555554444
No 97
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=22.44 E-value=3.2e+02 Score=24.43 Aligned_cols=81 Identities=20% Similarity=0.133 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChh-hhHHHHHHHH
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL-EHLKEIAEVL 299 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~-~~l~~l~~l~ 299 (334)
-+++.+++-++.+.+.|+..|.|- |+. |.-.+....++++.|.+.+| + ..+.++.=|-..+. ... +..+.
T Consensus 156 ~~~~~~~~~~~~~~~~G~d~i~l~--DT~--G~~~P~~~~~lv~~l~~~~~--~-~~l~~H~Hn~~Gla~An~--laAv~ 226 (302)
T 2ftp_A 156 VDPRQVAWVARELQQMGCYEVSLG--DTI--GVGTAGATRRLIEAVASEVP--R-ERLAGHFHDTYGQALANI--YASLL 226 (302)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEE--ESS--SCCCHHHHHHHHHHHTTTSC--G-GGEEEEEBCTTSCHHHHH--HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe--CCC--CCcCHHHHHHHHHHHHHhCC--C-CeEEEEeCCCccHHHHHH--HHHHH
Confidence 578999999999999999999986 332 33223456788888876553 2 34555432222222 222 34333
Q ss_pred hCCCCCCeEEEccC
Q 019874 300 RHPCVYSFLHVPVQ 313 (334)
Q Consensus 300 ~~~~g~~~l~igiQ 313 (334)
+|+..++..+=
T Consensus 227 ---aGa~~vd~tv~ 237 (302)
T 2ftp_A 227 ---EGIAVFDSSVA 237 (302)
T ss_dssp ---TTCCEEEEBGG
T ss_pred ---hCCCEEEeccc
Confidence 58899998775
No 98
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=22.38 E-value=2.5e+02 Score=21.10 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=60.6
Q ss_pred CceEEEEeeCCCCChhHHHHHHHHHHhCC--Ceee--CC---------CCCCcEEEEeecccccchHHHHHHHHHHHhcC
Q 019874 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFG--YALT--DN---------SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124 (334)
Q Consensus 58 ~~~~~i~t~GC~~N~~Dse~m~~~L~~~G--~~~~--~~---------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~ 124 (334)
|.+|.|+. -+....+.+...|...| |.+. .+ ....|+|+++...-.. ...++++++++.
T Consensus 20 m~~iLivd----d~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~----~g~~~~~~l~~~ 91 (150)
T 4e7p_A 20 HMKVLVAE----DQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVK----TGLEVLEWIRSE 91 (150)
T ss_dssp CEEEEEEC----SCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSS----CHHHHHHHHHHT
T ss_pred ccEEEEEc----CCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCC----cHHHHHHHHHHh
Confidence 56776664 36666778888898887 5442 22 3468999997643221 234455555554
Q ss_pred --CCCEE-EEccccCCChh-hhccCcc-EEEcCCChHHHHHHHHHHhcCCc
Q 019874 125 --KKPLV-VAGCVPQGSRD-LKELEGV-SIVGVQQIDRVVEVVEETLKGHE 170 (334)
Q Consensus 125 --~~~VV-v~GC~a~~~~~-~~~~~~d-~vvG~~e~~~i~e~l~~~~~g~~ 170 (334)
+.+|| +++........ .....++ .+.-+-....+.+.|+..+.+..
T Consensus 92 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 92 KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 34544 44432211111 1133455 66667677888888888776653
No 99
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Probab=22.29 E-value=1.7e+02 Score=26.00 Aligned_cols=65 Identities=11% Similarity=0.155 Sum_probs=37.1
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEE
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv 130 (334)
.++.+...|..+...|-+.+...+... ..++|+++++...-.....+.+..+++.+++.|.+|++
T Consensus 100 ~~~~~~~~g~~l~~~~~~~~~~~~~~~-------~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~ 164 (323)
T 2f02_A 100 NQTEILEAGPTVSPEEISNFLENFDQL-------IKQAEIVTISGSLAKGLPSDFYQELVQKAHAQEVKVLL 164 (323)
T ss_dssp EEEEEEECCCBCCHHHHHHHHHHHHHH-------HTTCSEEEEESCCCBTSCTTHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCCHHHHHHHHHHHHHh-------ccCCCEEEEECCCCCCCChHHHHHHHHHHHHCCCEEEE
Confidence 345566677766655555444333211 24689998865432211223455677778878877775
No 100
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=21.95 E-value=2.6e+02 Score=22.24 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCee--eCC--C----------CCCcEEEEeecccccchHHHHHHHHHHHh---cCCCCEEEEcccc
Q 019874 76 EYMAGQLSAFGYAL--TDN--S----------EEADIWLINTCTVKSPSQSAMDTLIAKCK---SAKKPLVVAGCVP 135 (334)
Q Consensus 76 e~m~~~L~~~G~~~--~~~--~----------~~ADlviiNTCtv~~~a~~~~~~~i~~~k---~~~~~VVv~GC~a 135 (334)
+.|+..|.+.|.++ .+- . .++|.||+-|.|.-... . ....+..+. -.|+++.+=|++.
T Consensus 23 ~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~g~~-p-~~~~l~~l~~~~~~~k~va~fgs~g 97 (159)
T 3fni_A 23 QAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAASAA-S-IQGALSTILGSVNEKQAVGIFETGG 97 (159)
T ss_dssp HHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTTSHH-H-HHHHHHHHHHHCCTTSEEEEECCSS
T ss_pred HHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCCCCc-c-HHHHHHHHHhhcccCCEEEEEEcCC
Confidence 34556666678653 221 1 13899999877654322 2 233444443 3567777777654
No 101
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=21.79 E-value=3.7e+02 Score=24.50 Aligned_cols=82 Identities=9% Similarity=0.086 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHHHh
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l~~ 300 (334)
.+++.+++-++.+.+.|+..|.|-| .+ |.-.+..+.+|++.+.+.+| + ..+.++.=|=..+.- ...|+.+.
T Consensus 166 ~~~~~~~~~~~~~~~~Ga~~i~l~D-T~---G~~~P~~v~~lv~~l~~~~p--~-~~i~~H~Hnd~GlA~-AN~laAv~- 236 (337)
T 3ble_A 166 NSPDYVKSLVEHLSKEHIERIFLPD-TL---GVLSPEETFQGVDSLIQKYP--D-IHFEFHGHNDYDLSV-ANSLQAIR- 236 (337)
T ss_dssp HCHHHHHHHHHHHHTSCCSEEEEEC-TT---CCCCHHHHHHHHHHHHHHCT--T-SCEEEECBCTTSCHH-HHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-CC---CCcCHHHHHHHHHHHHHhcC--C-CeEEEEecCCcchHH-HHHHHHHH-
Confidence 4789999999999999999998854 22 33334567889999988775 3 345554222111110 01133333
Q ss_pred CCCCCCeEEEccC
Q 019874 301 HPCVYSFLHVPVQ 313 (334)
Q Consensus 301 ~~~g~~~l~igiQ 313 (334)
+|+.+++-.+=
T Consensus 237 --aGa~~vd~tv~ 247 (337)
T 3ble_A 237 --AGVKGLHASIN 247 (337)
T ss_dssp --TTCSEEEEBGG
T ss_pred --hCCCEEEEecc
Confidence 58888885543
No 102
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=21.76 E-value=1.1e+02 Score=27.19 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=27.6
Q ss_pred CCceEEEEe-eCCCCChhHHHHHHHHHHhCCCeee--CC---------CCCCcEEEE
Q 019874 57 GTETIYMKT-FGCSHNQSDSEYMAGQLSAFGYALT--DN---------SEEADIWLI 101 (334)
Q Consensus 57 ~~~~~~i~t-~GC~~N~~Dse~m~~~L~~~G~~~~--~~---------~~~ADlvii 101 (334)
.+++|.|+- +| .=...|+..|.+.|++++ +. ..+||+|++
T Consensus 20 ~~~~I~iIGg~G-----~mG~~la~~l~~~G~~V~~~~~~~~~~~~~~~~~aDvVil 71 (298)
T 2pv7_A 20 DIHKIVIVGGYG-----KLGGLFARYLRASGYPISILDREDWAVAESILANADVVIV 71 (298)
T ss_dssp TCCCEEEETTTS-----HHHHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEE
T ss_pred CCCEEEEEcCCC-----HHHHHHHHHHHhCCCeEEEEECCcccCHHHHhcCCCEEEE
Confidence 467899998 87 234567788888898653 11 136788887
No 103
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Probab=21.68 E-value=2.1e+02 Score=25.52 Aligned_cols=65 Identities=12% Similarity=0.220 Sum_probs=37.0
Q ss_pred eEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEEE
Q 019874 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA 131 (334)
Q Consensus 60 ~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv~ 131 (334)
+..+...|..+...|.+.+...+... ..++|+++++.........+.+..+++.+++.|.+|++=
T Consensus 119 ~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D 183 (330)
T 2jg1_A 119 QTEILEQGPEIDNQEAAGFIKHFEQM-------MEKVEAVAISGSLPKGLNQDYYAQIIERCQNKGVPVILD 183 (330)
T ss_dssp EEEEEECCCBCCHHHHHHHHHHHHHH-------GGGCSEEEEESCCCBTSCTTHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEECCCCCCCHHHHHHHHHHHHHh-------cCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34456677766655555444333221 246899988543222112234556778888888888763
No 104
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.1.16.3
Probab=21.38 E-value=4.1e+02 Score=23.50 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeec--C-----CCChhhhHH
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT--N-----PPFILEHLK 293 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~--~-----p~~i~~~l~ 293 (334)
.++++.++.++..-+.|+..+|+.+ ..+. .+-.-++-.+...- .+||+++. . |..+-+.+-
T Consensus 11 ~~~~~~~~~a~~AE~~Gfd~~w~~e-h~~~------~~p~~~la~~Aa~T-----~rI~lgt~v~~~~~~~P~~~A~~~a 78 (321)
T 1f07_A 11 EPIEKIVKLVKLAEDVGFEYAWITD-HYNN------KNVYETLALIAEGT-----ETIKLGPGVTNPYVRSPAITASAIA 78 (321)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEECC-CTTS------SCHHHHHHHHHHTC-----SSCEEEESSBCSSSBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc-cccC------CCHHHHHHHHHHhC-----CcceEeeeeecCCCCCHHHHHHHHH
Confidence 4678888888877778999999854 3321 13346777777642 47777763 2 222333333
Q ss_pred HHHHHHhCCCCCCeEEEccCCcCHHHHHHhCCCC
Q 019874 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQKIV 327 (334)
Q Consensus 294 ~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R~~ 327 (334)
.|+.|. + .++.+|+=+|.+.....++..+
T Consensus 79 tLd~ls--~---GR~~lGiG~G~~~~~~~~G~~~ 107 (321)
T 1f07_A 79 TLDELS--N---GRATLGIGPGDKATFDALGIEW 107 (321)
T ss_dssp HHHHHT--T---SCBCEEECCCCHHHHHHTTCCC
T ss_pred HHHHHc--C---CCeEEEEecCcHHHHHHcCCCC
Confidence 344443 2 3466777778877777777654
No 105
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=21.36 E-value=3.5e+02 Score=22.30 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=41.3
Q ss_pred CCCceEEEEeeCC----------CCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcC-
Q 019874 56 PGTETIYMKTFGC----------SHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA- 124 (334)
Q Consensus 56 ~~~~~~~i~t~GC----------~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~- 124 (334)
+...++.|.|-|= +.--.-+..+++.|++.|++++ +..+ |.+. .+.+.+.++++.++
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~------~~~i-----v~Dd-~~~I~~al~~a~~~~ 80 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKII------GYSL-----VPDD-KIKILKAFTDALSID 80 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEE------EEEE-----ECSC-HHHHHHHHHHHHTCT
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEE------EEEE-----eCCC-HHHHHHHHHHHHhcC
Confidence 4567899999982 3334455678899999998653 2222 2333 34566777776554
Q ss_pred CC-CEEEEcccc
Q 019874 125 KK-PLVVAGCVP 135 (334)
Q Consensus 125 ~~-~VVv~GC~a 135 (334)
+. -||.+|=..
T Consensus 81 ~~DlVittGG~s 92 (178)
T 2pjk_A 81 EVDVIISTGGTG 92 (178)
T ss_dssp TCCEEEEESCCS
T ss_pred CCCEEEECCCCC
Confidence 23 355555443
No 106
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=21.32 E-value=3.9e+02 Score=23.28 Aligned_cols=85 Identities=8% Similarity=0.084 Sum_probs=55.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCCCCCCHHHHHHHHHHhCCCCCCceEEEeecCCCChhhhHHHHHHH
Q 019874 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298 (334)
Q Consensus 219 rsr~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d~~~~l~~Ll~~l~~~i~~~~~~~ir~~~~~p~~i~~~l~~l~~l 298 (334)
|..++++.++-++.+++.|++-|.++-.+ ..-.+.++++.+.+| + .-+..++ . ++. ++++..
T Consensus 41 r~~~~~~a~~~a~al~~gGi~~iEvt~~t---------~~a~e~I~~l~~~~~--~-~~iGaGT--V--lt~--~~a~~A 102 (232)
T 4e38_A 41 AIDNAEDIIPLGKVLAENGLPAAEITFRS---------DAAVEAIRLLRQAQP--E-MLIGAGT--I--LNG--EQALAA 102 (232)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEETTS---------TTHHHHHHHHHHHCT--T-CEEEEEC--C--CSH--HHHHHH
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCCC---------CCHHHHHHHHHHhCC--C-CEEeECC--c--CCH--HHHHHH
Confidence 55678999999999999999998885321 234588888887775 3 3344333 2 222 223433
Q ss_pred HhCCCCCCeEEEccCCcCHHHHHHhCC
Q 019874 299 LRHPCVYSFLHVPVQSGSDAVLSVSQK 325 (334)
Q Consensus 299 ~~~~~g~~~l~igiQSgsd~vLk~M~R 325 (334)
.+ +|..+++.|- .++++++..++
T Consensus 103 i~--AGA~fIvsP~--~~~~vi~~~~~ 125 (232)
T 4e38_A 103 KE--AGATFVVSPG--FNPNTVRACQE 125 (232)
T ss_dssp HH--HTCSEEECSS--CCHHHHHHHHH
T ss_pred HH--cCCCEEEeCC--CCHHHHHHHHH
Confidence 33 4789999883 67778776544
No 107
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*
Probab=21.20 E-value=3.8e+02 Score=23.28 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=36.2
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCCCCCCcEEEEeecccccchHHHHHHHHHHHhcCCCCEEE
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVV 130 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~~~~~VVv 130 (334)
.++.+...|..+...+-+.+...+.+ .... |+++++...-.....+.+..+++.+++.|.+|++
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~-~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~ 165 (309)
T 3cqd_A 102 EQYRFVMPGAALNEDEFRQLEEQVLE-------IESG-AILVISGSLPPGVKLEKLTQLISAAQKQGIRCIV 165 (309)
T ss_dssp CEEEEECCCCCCCHHHHHHHHHHHHT-------SCTT-CEEEEESCCCTTCCHHHHHHHHHHHHTTTCEEEE
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHH-------hhcC-CEEEEECCCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 34566677776655554444333321 2345 8988854322112234456677888888877775
No 108
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}
Probab=20.92 E-value=2.3e+02 Score=26.86 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeeccCCCCCCC-----------CC---------CCHHHHHHHHHHhCCCCCCceEEE
Q 019874 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-----------IG---------VNLPILLNAIVAELPPDGSTMLRI 280 (334)
Q Consensus 221 r~~e~Iv~Ei~~l~~~G~kei~l~~~d~~~yg~d-----------~~---------~~l~~Ll~~l~~~i~~~~~~~ir~ 280 (334)
.++++++++++.+++.|++.|-+= ++.++.+ .+ ....+.++++.+.++ ....+++
T Consensus 153 ~~~e~~~~~a~~~~~~G~~~iKlK---vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG--~d~~L~v 227 (422)
T 3tji_A 153 ETLEALFASVDALIAQGYRHIRCQ---LGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYG--WKLHILH 227 (422)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEE---ESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHC--SSSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe---eccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcC--CCCEEEE
Confidence 478999999999999999988762 2222210 00 012456777776554 3456666
Q ss_pred eecCCC-ChhhhHHHHHHHHhCCCCCCeEEEccCCcCHHHHHHhCC
Q 019874 281 GMTNPP-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSVSQK 325 (334)
Q Consensus 281 ~~~~p~-~i~~~l~~l~~l~~~~~g~~~l~igiQSgsd~vLk~M~R 325 (334)
. .|-. ...+-+.-+..|.. .+..+|.=|+...+-+-++.+++
T Consensus 228 D-aN~~~~~~~A~~~~~~Le~--~~i~~iEqP~~~~d~~~~~~l~~ 270 (422)
T 3tji_A 228 D-VHERLFPQQAVQLAKQLEP--FQPYFIEDILPPQQSAWLEQVRQ 270 (422)
T ss_dssp E-CTTCSCHHHHHHHHHHHGG--GCCSEEECCSCGGGGGGHHHHHH
T ss_pred E-CCCCCCHHHHHHHHHHHHh--hCCCeEECCCChhhHHHHHHHHh
Confidence 4 3322 22222211233332 46788888887655555655544
No 109
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=20.66 E-value=1.8e+02 Score=27.13 Aligned_cols=76 Identities=11% Similarity=0.026 Sum_probs=46.8
Q ss_pred eeeeeeccCCCCCCCccccccccCCccccCCHHHHHHHHHHHHHCCCcEEEEeec-cCC---CCCCCC--CC-CHHHHHH
Q 019874 192 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSE-DTG---AYGRDI--GV-NLPILLN 264 (334)
Q Consensus 192 ~~~~v~isrGC~~~CsfC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~-d~~---~yg~d~--~~-~l~~Ll~ 264 (334)
++..|-+..|=.-. --++..-|-+ ..+++.+++|++.+++.|++-|.|+|. .-. ..|..- .. -+..-++
T Consensus 38 LI~PlFV~eg~~~~---~~I~SMPGv~-r~sid~l~~~~~~~~~lGi~~v~LFgv~~~~~KD~~gs~A~~~~g~v~rair 113 (337)
T 1w5q_A 38 LILPVFVLDGVNQR---ESIPSMPGVE-RLSIDQLLIEAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATR 113 (337)
T ss_dssp EEEEEEEESSSSCE---EECTTSTTCE-EEEHHHHHHHHHHHHHTTCCEEEEEECCCGGGCBSSCGGGGCTTSHHHHHHH
T ss_pred ceeeEEEecCCCCc---cccCCCCCce-eeCHHHHHHHHHHHHHCCCCEEEEecCCCcccCCcccCccCCCCChHHHHHH
Confidence 34445555554322 1244454543 468999999999999999999999986 211 111110 12 2556778
Q ss_pred HHHHhCC
Q 019874 265 AIVAELP 271 (334)
Q Consensus 265 ~l~~~i~ 271 (334)
.|.+.+|
T Consensus 114 ~iK~~~p 120 (337)
T 1w5q_A 114 ALRERFP 120 (337)
T ss_dssp HHHHHCT
T ss_pred HHHHHCC
Confidence 8877777
No 110
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=20.38 E-value=2.3e+02 Score=19.94 Aligned_cols=89 Identities=12% Similarity=0.166 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHHHhCCCeeeCC-----------CCCCcEEEEeecccccchHHHHHHHHHHHhc--CCCCE-EEEccccC
Q 019874 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINTCTVKSPSQSAMDTLIAKCKS--AKKPL-VVAGCVPQ 136 (334)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~~~~-----------~~~ADlviiNTCtv~~~a~~~~~~~i~~~k~--~~~~V-Vv~GC~a~ 136 (334)
+....+.+...|+..||++... ....|+++++...-... ..+.++++++ .+.+| ++++....
T Consensus 10 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~----g~~~~~~l~~~~~~~~ii~~s~~~~~ 85 (116)
T 3a10_A 10 EPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGIS----GLEVAGEIRKKKKDAKIILLTAYSHY 85 (116)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSC----HHHHHHHHHHHCTTCCEEEEESCGGG
T ss_pred CHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCC----HHHHHHHHHccCCCCeEEEEECCcch
Confidence 4555677788888888876421 13579999875432112 2234444443 23454 45554221
Q ss_pred CChhhhccCcc-EEEcCCChHHHHHHHHH
Q 019874 137 GSRDLKELEGV-SIVGVQQIDRVVEVVEE 164 (334)
Q Consensus 137 ~~~~~~~~~~d-~vvG~~e~~~i~e~l~~ 164 (334)
........++ .+.-+-....+...++.
T Consensus 86 -~~~~~~~g~~~~l~Kp~~~~~l~~~i~~ 113 (116)
T 3a10_A 86 -RSDMSSWAADEYVVKSFNFDELKEKVKK 113 (116)
T ss_dssp -GGCGGGGGSSEEEECCSSTHHHHHHHHH
T ss_pred -HHHHHhccccceEECCCCHHHHHHHHHH
Confidence 1111222344 55555565666666654
No 111
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=20.37 E-value=98 Score=24.97 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCee--e--C-----CCCCCcEEEEeeccc-ccchHHHHHHHHHHHhc------CCCCEEEEccccC
Q 019874 76 EYMAGQLSAFGYAL--T--D-----NSEEADIWLINTCTV-KSPSQSAMDTLIAKCKS------AKKPLVVAGCVPQ 136 (334)
Q Consensus 76 e~m~~~L~~~G~~~--~--~-----~~~~ADlviiNTCtv-~~~a~~~~~~~i~~~k~------~~~~VVv~GC~a~ 136 (334)
+.|+..|.+.|+++ . + +..++|+|+|-|.|. .......+...++.++. .++++.|=||..+
T Consensus 28 ~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~~~~~~l~~k~~avfg~G~~ 104 (167)
T 1ykg_A 28 EALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDT 104 (167)
T ss_dssp HHHHHHHHHHTCCCEEEEGGGCCGGGGGGCSEEEEEEECBGGGBCCGGGHHHHHHHTSTTCCCCTTCEEEEEEECCT
T ss_pred HHHHHHHHHCCCceEEeehhhCCHHHhccCCeEEEEEcccCCCcCChhHHHHHHHHHhccccccCCCEEEEEeecCC
Confidence 34445555557643 1 1 234689999988776 22211223444555542 2456666666443
No 112
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=20.10 E-value=2.2e+02 Score=21.92 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=50.1
Q ss_pred ceEEEEeeCCCCChhHHHHHHHHHHhCCCeeeCC--CCCCcEEEEeeccccc---chHHHHHHHHHHHhcCCCCEEEEcc
Q 019874 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--SEEADIWLINTCTVKS---PSQSAMDTLIAKCKSAKKPLVVAGC 133 (334)
Q Consensus 59 ~~~~i~t~GC~~N~~Dse~m~~~L~~~G~~~~~~--~~~ADlviiNTCtv~~---~a~~~~~~~i~~~k~~~~~VVv~GC 133 (334)
..+.++.+.-++...-++.+...|.+. +.. ......+||+-..|+. .+-.-+..+.++++++|..+++.|+
T Consensus 29 ~~v~v~~~~G~L~f~~a~~~~~~l~~~----~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~ 104 (143)
T 3llo_A 29 PGIKIFQINAPIYYANSDLYSSALKRK----TGVNGSENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGC 104 (143)
T ss_dssp TTEEEEEECSCHHHHHHHHHHHC---------------CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESC
T ss_pred CCeEEEEeCCCeEechHHHHHHHHHHH----HccCCCCCceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 357788888899999998888887653 111 1345678888776654 2345566667788889999999998
Q ss_pred ccCCC
Q 019874 134 VPQGS 138 (334)
Q Consensus 134 ~a~~~ 138 (334)
.++..
T Consensus 105 ~~~v~ 109 (143)
T 3llo_A 105 SAQVV 109 (143)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 65543
Done!