RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019875
(334 letters)
>d1nuwa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 328
Score = 349 bits (897), Expect = e-121
Identities = 158/273 (57%), Positives = 203/273 (74%), Gaps = 1/273 (0%)
Query: 10 TDLMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQ 69
T+++T+TRFV+ E+ + G+ + LL+ + K + +AV KAG+A L G+AG TNV
Sbjct: 1 TNIVTLTRFVM-EEGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVT 59
Query: 70 GEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFDPLDGSSNI 129
G++ KKLDVLSND+ + L SS TC+LVSEED+ AI VEP KRG+Y V FDPLDGSSNI
Sbjct: 60 GDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNI 119
Query: 130 DCGVSIGTIFGIYMMKDSHEPTLDDVLQPGNNMLAAGYCMYGSSCTLVLSTGSGVNGFTL 189
DC VSIGTIFGIY + EP+ D LQPG N++AAGY +YGS+ LVL+ +GVN F L
Sbjct: 120 DCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFML 179
Query: 190 DPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCKFPKDGSSPKSLRYIG 249
DP++GEFIL D+KI KKG IYS+NEG AK +D +Y+++ KFP D S+P RY+G
Sbjct: 180 DPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVG 239
Query: 250 SMVADVHRTLLYGGIFMYPRDKKSPNGKLRYVF 282
SMVADVHRTL+YGGIFMYP +KKSP GKLR ++
Sbjct: 240 SMVADVHRTLVYGGIFMYPANKKSPKGKLRLLY 272
>d1d9qa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Garden pea (Pisum
sativum) [TaxId: 3888]}
Length = 340
Score = 330 bits (847), Expect = e-113
Identities = 146/288 (50%), Positives = 186/288 (64%), Gaps = 18/288 (6%)
Query: 12 LMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQGE 71
++T+T ++L ++ K + +I+LS I + CK + S V +A ++ L G G N+QGE
Sbjct: 1 IITLTSWLLQQEQKGIID-AELTIVLSSISMACKQIASLVQRANISNLTGTQGAVNIQGE 59
Query: 72 EQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFDPLDGSSNIDC 131
+QKKLDV+SN+VF L SSGRT I+ SEE++ + VE S G Y VVFDPLDGSSN+D
Sbjct: 60 DQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNLDA 119
Query: 132 GVSIGTIFGIYMMKDSHEP-----------------TLDDVLQPGNNMLAAGYCMYGSSC 174
VS G+IFGIY D P + +V QPG+N+LAAGYCMY SS
Sbjct: 120 AVSTGSIFGIYSPNDECLPDFGDDSDDNTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSV 179
Query: 175 TLVLSTGSGVNGFTLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCK 234
VL+ G GV FTLDP GEF+LT +++IPK GKIYS NEGN K WD KY++ K
Sbjct: 180 IFVLTIGKGVFVFTLDPLYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDENLKKYIDDLK 239
Query: 235 FPKDGSSPKSLRYIGSMVADVHRTLLYGGIFMYPRDKKSPNGKLRYVF 282
P P S RYIGS+V D HRTLLYGGI+ YPRDKKS NGKLR ++
Sbjct: 240 EPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLY 287
>d2hfva1 d.58.5.5 (A:23-97) Hypothetical protein RPA1041
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 75
Score = 30.4 bits (69), Expect = 0.053
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 248 IGSMVADVHRTLLYGGIFMYPR 269
IG +V D + ++L G + + PR
Sbjct: 25 IGHLVLDQNMSILEGSLGVIPR 46
>d2g5fa1 d.161.1.1 (A:15-449) Salicylate synthase MbtI
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 435
Score = 30.7 bits (68), Expect = 0.24
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
+ RG Y L +D +++ +
Sbjct: 364 DECPRGLYSGAVVMLSADGGLDAALTLRAAY 394
>d1k0ga_ d.161.1.1 (A:) P-aminobenzoate synthase component I
{Escherichia coli [TaxId: 562]}
Length = 453
Score = 29.5 bits (65), Expect = 0.65
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
EP +R +C L N+D ++I T+
Sbjct: 383 EPQRRNAWCGSIGYLSFCGNMDTSITIRTLT 413
>d1qdla_ d.161.1.1 (A:) Anthranilate synthase
aminodeoxyisochorismate synthase/lyase subunit, TrpE
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 422
Score = 28.7 bits (63), Expect = 0.96
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
E KRG Y + N + ++I T F
Sbjct: 351 EEYKRGPYAGAVGFISADGNAEFAIAIRTAF 381
>d1i7qa_ d.161.1.1 (A:) Anthranilate synthase
aminodeoxyisochorismate synthase/lyase subunit, TrpE
{Serratia marcescens [TaxId: 615]}
Length = 517
Score = 28.8 bits (63), Expect = 1.1
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
++RG Y N+D + I + +
Sbjct: 439 RSTRRGSYGGRVGYFTAVRNLDTCIVIRSAY 469
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 184
Score = 27.8 bits (61), Expect = 1.4
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 110 PSKRGRYCVVFDPLDGSSNIDC-GVSIGTIFGIYMMKDSHEPTLDDVLQPGNNMLA 164
R + F + +++ G + T + H+ + + G N +A
Sbjct: 89 DDTSSRTYLDFSGVLSKADVWVNGTKVATKDQVNGAYTRHDLDITAQVHTGVNSVA 144
>d1inpa_ e.7.1.1 (A:) Inositol polyphosphate 1-phosphatase {Cow (Bos
taurus), brain [TaxId: 9913]}
Length = 400
Score = 28.0 bits (61), Expect = 1.5
Identities = 19/193 (9%), Positives = 44/193 (22%), Gaps = 16/193 (8%)
Query: 77 DVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFDPLDGSSNI-----DC 131
VL+ + ++ + + + + DP+D + D
Sbjct: 109 KVLNGNKLASEALAKVVHQDVFFSDPALDSVEINIPQDILGIWVDPIDSTYQYIKGSADI 168
Query: 132 GVSIG----------TIFGIYMMKDSHEPTLDDVLQPGNNMLAAGYCMYGSSCTLVLSTG 181
+ G + G+Y ++ P + + QP + G + G
Sbjct: 169 TPNQGIFPSGLQCVTVLIGVYDIQT-GVPLMGVINQPFVSQDLHTRRWKGQCYWGLSYLG 227
Query: 182 SGVNGFTLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCKFPKDGSS 241
+ ++ S + + T K +
Sbjct: 228 TNIHSLLPPVSTRSNSEAQSQGTQNPSSEGSCRFSVVISTSEKETIKGALSHVCGERIFR 287
Query: 242 PKSLRYIGSMVAD 254
Y V
Sbjct: 288 AAGAGYKSLCVIL 300
>d2fn0a1 d.161.1.1 (A:2-434) Salicylate synthetase Irp9 {Yersinia
enterocolitica [TaxId: 630]}
Length = 433
Score = 26.3 bits (57), Expect = 6.7
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
E + R Y LD + D + + ++F
Sbjct: 364 EKTPRELYSGAILLLD-DTRFDAALVLRSVF 393
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 146
Score = 24.9 bits (54), Expect = 9.1
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 10/75 (13%)
Query: 100 EEDEEAIFVEPSKRGRYCVVFDPLDGSSNIDCGVSIGTIFGIYMMKDSHEPTL----DDV 155
EEDEE +F R + D + G G + + K+ L D
Sbjct: 21 EEDEEELF---KMRAKLFRFASENDLPEWKERGT--GDVK-LLKHKEKGAIRLLMRRDKT 74
Query: 156 LQPGNNMLAAGYCMY 170
L+ N
Sbjct: 75 LKICANHYITPMMEL 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.419
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,252,004
Number of extensions: 58675
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 12
Length of query: 334
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,226,816
Effective search space: 304250368
Effective search space used: 304250368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)