BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019876
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CJC|A Chain A, Structure Of Adrenodoxin Reductase Of Mitochondrial P450
Systems
pdb|1E1L|A Chain A, Structure Of Adrenodoxin Reductase In Complex With Nadp
Obtained By Cocrystallisation
pdb|1E1K|A Chain A, Adrenodoxin Reductase In Complex With Nadp+ Obtained By A
Soaking Experiment
pdb|1E1M|A Chain A, Adrenodoxin Reductase In Complex With Nadph Obtained By A
Soaking Experiment
pdb|1E1N|A Chain A, Structure Of Adrenodoxin Reductase At 2.4 Angstrom In
Crystal Form A''
pdb|1E6E|A Chain A, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
pdb|1E6E|C Chain C, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
Length = 460
Score = 264 bits (675), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 151/318 (47%), Positives = 196/318 (61%), Gaps = 10/318 (3%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHPE K VIN F++
Sbjct: 8 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQ 67
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
+ +RC+F+GNV +G V++ EL+ YH VVL+YGAE +AL IPGE+L GV SAR FV
Sbjct: 68 TARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFV 127
Query: 141 WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200
WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P + L TDI A AL
Sbjct: 128 GWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ 186
Query: 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRR 260
S ++ V++VGRRGP+Q A T KELRE++ + + D + + + +R ++R
Sbjct: 187 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLG--LQDRIKEAARPRKR 244
Query: 261 VYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK 315
+ ELL + R FFR P L S + +G+ T L+
Sbjct: 245 LMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPD-GRRAAGIRLAVTRLE 303
Query: 316 GGGPGKQYAVGTGEFEDL 333
G G + AV TG+ EDL
Sbjct: 304 GIGEATR-AVPTGDVEDL 320
>pdb|1LQT|A Chain A, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQT|B Chain B, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQU|A Chain A, Mycobacterium Tuberculosis Fpra In Complex With Nadph
pdb|1LQU|B Chain B, Mycobacterium Tuberculosis Fpra In Complex With Nadph
Length = 456
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 181/320 (56%), Gaps = 14/320 (4%)
Query: 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-----VDIIDRLPTPFGLVRSGVAPDHPETKI 73
P + +VGSGP+ F+ A LKA + VD+++ LPTP+GLVRSGVAPDHP+ K
Sbjct: 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKS 62
Query: 74 VINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGV 133
+ QF + + R FFGNV +G V EL + Y V+ A GA+SDR L IPGEDL G
Sbjct: 63 ISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGS 122
Query: 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193
+A +FV WYN HP + +SPDL S AV++G GNVALDVARILL + LA TDIA +
Sbjct: 123 IAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILLTDPDVLARTDIADH 181
Query: 194 AWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253
A +L I++V +VGRRGP+QAA T ELRE+ + + V I +L TDE+
Sbjct: 182 ALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAEL-DGITDEDAAA 240
Query: 254 NSRIQRRVYELLXXXXXXXXXQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
++ ++ ++L +P G R + F F P + V + +
Sbjct: 241 VGKVCKQNIKVL---RGYADREPRPGHRRMVFRFLTSPIEIKGKRK----VERIVLGRNE 293
Query: 314 LKGGGPGKQYAVGTGEFEDL 333
L G G+ A TGE E+L
Sbjct: 294 LVSDGSGRVAAKDTGEREEL 313
>pdb|2C7G|A Chain A, Fpra From Mycobacterium Tuberculosis: His57gln Mutant
Length = 456
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 182/320 (56%), Gaps = 14/320 (4%)
Query: 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-----VDIIDRLPTPFGLVRSGVAPDHPETKI 73
P + +VGSGP+ F+ A LKA + VD+++ LPTP+GLVRSGVAPD P+ K
Sbjct: 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDQPKIKS 62
Query: 74 VINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGV 133
+ QF + + R FFGNV +G V EL + Y V+ A GA+SDR L IPGEDL G
Sbjct: 63 ISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGS 122
Query: 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193
+A +FV WYN HP + +SPDL S AV++G GNVALDVARILL + LA TDIA +
Sbjct: 123 IAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILLTDPDVLARTDIADH 181
Query: 194 AWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253
A +L I++V +VGRRGP+QAA T ELRE+ + + V I +L TDE+
Sbjct: 182 ALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAEL-DGITDEDAAA 240
Query: 254 NSRIQRRVYELLXXXXXXXXXQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
++ ++ ++L +P G R + F F P +E + V + +
Sbjct: 241 VGKVCKQNIKVL---RGYADREPRPGHRRMVFRFLTSP---IEIKGKR-KVERIVLGRNE 293
Query: 314 LKGGGPGKQYAVGTGEFEDL 333
L G G+ A TGE E+L
Sbjct: 294 LVSDGSGRVAAKDTGEREEL 313
>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|H Chain H, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|I Chain I, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|J Chain J, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|K Chain K, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|L Chain L, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 456
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 6/140 (4%)
Query: 46 QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELR 105
+V + DR GL+ G+ P K V+ + +++ + N +G SL ELR
Sbjct: 147 EVHVYDRYDRMGGLLVYGI-PGFKLEKSVVERRVKLLADAGVIYHPNFEVGRDASLPELR 205
Query: 106 QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA--- 162
+ + V++A G R + PG L + +A +++ N G + + A
Sbjct: 206 RKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGK 265
Query: 163 --VILGQGNVALDVARILLR 180
V+LG G+ A+D R +R
Sbjct: 266 HVVVLGGGDTAMDCVRTAIR 285
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57
+V +VG+GP GF A++ Q +V +ID+ P P+
Sbjct: 10 KVVIVGNGPGGFELAKQL---SQTYEVTVIDKEPVPY 43
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59
++ ++G+GP+G TA+ L QV + +R +P G+
Sbjct: 10 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV 48
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59
++ ++G+GP+G TA+ L QV + +R +P G+
Sbjct: 8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV 46
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 108 YHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKS-TDTAVILG 166
Y ++ A G + R L G DL GVH+ R D L +L + AV++G
Sbjct: 108 YGKLIWATGGDPRR-LSCVGADLAGVHAVRT-------KEDADRLMAELDAGAKNAVVIG 159
Query: 167 QGNVALDVARILLR 180
G + L+ A +L +
Sbjct: 160 GGYIGLEAAAVLTK 173
>pdb|3B3Q|A Chain A, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|B Chain B, Crystal Structure Of A Synaptic Adhesion Complex
Length = 577
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 1 MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEA 45
+ +A W S + +PLR+ V GSG G TL + E
Sbjct: 205 LIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEG 249
>pdb|3VKF|A Chain A, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|B Chain B, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 585
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 1 MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEA 45
+ +A W S + +PLR+ V GSG G TL + E
Sbjct: 210 LIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEG 254
>pdb|3BIW|A Chain A, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|B Chain B, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|C Chain C, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|D Chain D, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIX|A Chain A, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|B Chain B, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|C Chain C, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|D Chain D, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
Length = 574
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 1 MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQE 44
+ +A W S + +PLR+ V GSG G TL + E
Sbjct: 192 LIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSE 235
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQE-AQVDIID 51
R+ ++G GPAG+ A +H E QV +ID
Sbjct: 4 RIVILGGGPAGYEAALVAATSHPETTQVTVID 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,096,848
Number of Sequences: 62578
Number of extensions: 410975
Number of successful extensions: 1053
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1035
Number of HSP's gapped (non-prelim): 17
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)