Query 019876
Match_columns 334
No_of_seqs 340 out of 3033
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02852 ferredoxin-NADP+ redu 100.0 7.5E-46 1.6E-50 358.3 29.9 317 17-333 24-341 (491)
2 KOG1800 Ferredoxin/adrenodoxin 100.0 4.6E-44 1E-48 322.3 21.3 309 16-333 17-329 (468)
3 PTZ00188 adrenodoxin reductase 100.0 1.7E-41 3.7E-46 323.2 27.2 306 16-333 36-368 (506)
4 PRK12779 putative bifunctional 100.0 2.8E-31 6E-36 275.3 25.3 240 17-333 304-549 (944)
5 PRK12775 putative trifunctiona 100.0 6.3E-31 1.4E-35 274.8 24.8 240 18-333 429-673 (1006)
6 PRK12831 putative oxidoreducta 100.0 1.2E-30 2.5E-35 253.9 24.2 239 16-331 137-381 (464)
7 TIGR01316 gltA glutamate synth 100.0 3.4E-30 7.4E-35 250.0 23.9 238 16-330 130-371 (449)
8 PRK12778 putative bifunctional 100.0 1.6E-29 3.5E-34 259.5 25.0 238 17-330 429-670 (752)
9 PRK12769 putative oxidoreducta 100.0 1.8E-28 3.9E-33 248.2 25.2 240 17-332 325-570 (654)
10 PRK12809 putative oxidoreducta 100.0 4.1E-28 8.8E-33 244.7 24.9 240 17-332 308-553 (639)
11 TIGR01318 gltD_gamma_fam gluta 100.0 6.3E-28 1.4E-32 235.1 25.4 234 17-326 139-377 (467)
12 PRK11749 dihydropyrimidine deh 100.0 9.2E-28 2E-32 233.8 24.1 227 16-323 137-364 (457)
13 PRK09853 putative selenate red 100.0 6.5E-27 1.4E-31 240.1 24.5 227 17-332 537-765 (1019)
14 PRK12814 putative NADPH-depend 100.0 5.7E-27 1.2E-31 236.6 23.5 168 17-214 191-358 (652)
15 PRK06567 putative bifunctional 100.0 5.9E-27 1.3E-31 237.6 23.5 160 16-179 380-570 (1028)
16 COG0493 GltD NADPH-dependent g 100.0 1.3E-27 2.9E-32 229.3 17.8 248 16-333 120-372 (457)
17 TIGR01317 GOGAT_sm_gam glutama 100.0 1.5E-26 3.2E-31 226.4 23.4 254 17-331 141-399 (485)
18 PRK12810 gltD glutamate syntha 99.9 1.1E-25 2.4E-30 219.9 23.4 231 17-314 141-372 (471)
19 TIGR03315 Se_ygfK putative sel 99.9 3.9E-25 8.5E-30 228.0 23.4 225 18-332 536-762 (1012)
20 PRK13984 putative oxidoreducta 99.9 9E-25 1.9E-29 219.7 23.6 236 17-325 281-516 (604)
21 PRK12770 putative glutamate sy 99.9 3.4E-24 7.3E-29 202.1 23.5 222 16-315 15-253 (352)
22 PRK12771 putative glutamate sy 99.9 1.8E-23 4E-28 208.5 24.3 232 16-332 134-366 (564)
23 PRK06370 mercuric reductase; V 99.9 1.6E-22 3.6E-27 197.3 22.3 165 18-219 4-210 (463)
24 COG0492 TrxB Thioredoxin reduc 99.9 1.6E-22 3.4E-27 185.4 20.0 200 18-313 2-219 (305)
25 TIGR01421 gluta_reduc_1 glutat 99.9 3.2E-22 6.9E-27 194.4 21.8 163 19-221 2-207 (450)
26 PRK07251 pyridine nucleotide-d 99.9 5.1E-22 1.1E-26 192.6 22.5 164 19-219 3-196 (438)
27 COG1249 Lpd Pyruvate/2-oxoglut 99.9 3.6E-22 7.9E-27 191.7 20.0 167 18-221 3-214 (454)
28 TIGR02053 MerA mercuric reduct 99.9 9.2E-22 2E-26 192.1 22.0 164 20-220 1-206 (463)
29 KOG0399 Glutamate synthase [Am 99.9 3.7E-22 8E-27 199.0 17.6 163 12-180 1778-1945(2142)
30 PRK05249 soluble pyridine nucl 99.9 1.8E-21 3.8E-26 190.0 21.3 168 17-221 3-216 (461)
31 PRK09564 coenzyme A disulfide 99.9 1.5E-21 3.2E-26 189.7 18.4 169 20-217 1-186 (444)
32 PRK08010 pyridine nucleotide-d 99.9 3.6E-21 7.8E-26 186.8 20.9 165 19-220 3-198 (441)
33 TIGR01424 gluta_reduc_2 glutat 99.9 3.4E-21 7.5E-26 187.1 20.3 162 19-220 2-206 (446)
34 PRK04965 NADH:flavorubredoxin 99.9 1.2E-21 2.6E-26 186.4 16.8 168 20-218 3-179 (377)
35 TIGR02374 nitri_red_nirB nitri 99.9 4.7E-22 1E-26 204.6 14.5 212 22-312 1-222 (785)
36 PRK14989 nitrite reductase sub 99.9 7.7E-22 1.7E-26 203.3 15.6 169 19-217 3-182 (847)
37 KOG0404 Thioredoxin reductase 99.9 7.4E-21 1.6E-25 161.2 18.4 207 19-313 8-235 (322)
38 PTZ00058 glutathione reductase 99.9 6.6E-21 1.4E-25 188.6 21.2 183 18-241 47-301 (561)
39 PRK06467 dihydrolipoamide dehy 99.9 1.1E-20 2.4E-25 184.6 22.6 164 19-220 4-214 (471)
40 PRK06416 dihydrolipoamide dehy 99.9 1.3E-20 2.8E-25 184.0 23.0 162 18-219 3-211 (462)
41 PRK06116 glutathione reductase 99.9 5.9E-21 1.3E-25 185.8 20.2 162 19-220 4-207 (450)
42 PRK09754 phenylpropionate diox 99.9 1.8E-21 3.9E-26 186.4 15.1 170 19-218 3-182 (396)
43 PLN02546 glutathione reductase 99.9 1.4E-20 2.9E-25 186.4 21.4 163 19-220 79-292 (558)
44 PRK05976 dihydrolipoamide dehy 99.9 1.7E-20 3.6E-25 183.6 21.7 165 18-220 3-220 (472)
45 PRK10262 thioredoxin reductase 99.9 2.5E-20 5.4E-25 173.6 21.6 204 18-311 5-225 (321)
46 PLN02507 glutathione reductase 99.9 1.7E-20 3.8E-25 184.2 20.6 175 7-220 13-243 (499)
47 PRK07845 flavoprotein disulfid 99.9 3.5E-20 7.5E-25 181.0 21.2 166 19-221 1-218 (466)
48 PRK14694 putative mercuric red 99.9 5.2E-20 1.1E-24 179.9 21.9 162 17-217 4-214 (468)
49 PRK06912 acoL dihydrolipoamide 99.9 2.9E-20 6.3E-25 181.3 19.9 185 20-241 1-234 (458)
50 TIGR03143 AhpF_homolog putativ 99.9 3.9E-20 8.5E-25 184.1 21.1 159 19-215 4-178 (555)
51 PRK06115 dihydrolipoamide dehy 99.9 6.6E-20 1.4E-24 179.0 22.2 163 19-220 3-214 (466)
52 TIGR01292 TRX_reduct thioredox 99.9 7.7E-20 1.7E-24 167.9 21.1 158 20-215 1-176 (300)
53 TIGR01350 lipoamide_DH dihydro 99.9 6.1E-20 1.3E-24 179.2 20.9 161 20-218 2-208 (461)
54 TIGR01423 trypano_reduc trypan 99.9 5.5E-20 1.2E-24 179.9 20.4 168 18-221 2-231 (486)
55 COG1252 Ndh NADH dehydrogenase 99.8 1.6E-20 3.6E-25 176.4 15.8 215 18-242 2-233 (405)
56 PLN02172 flavin-containing mon 99.8 2.4E-20 5.3E-25 181.0 16.8 165 17-215 8-239 (461)
57 PRK07846 mycothione reductase; 99.8 1E-19 2.3E-24 176.8 21.0 162 20-220 2-206 (451)
58 PRK13748 putative mercuric red 99.8 1.1E-19 2.3E-24 181.7 21.5 163 18-219 97-308 (561)
59 PRK13512 coenzyme A disulfide 99.8 5.5E-20 1.2E-24 178.3 18.3 188 19-240 1-211 (438)
60 PRK15317 alkyl hydroperoxide r 99.8 1.8E-19 3.9E-24 178.1 21.8 201 17-311 209-427 (517)
61 KOG1336 Monodehydroascorbate/f 99.8 2.6E-20 5.6E-25 174.3 14.7 215 18-312 73-297 (478)
62 TIGR03140 AhpF alkyl hydropero 99.8 1.9E-19 4.2E-24 177.8 21.1 201 17-311 210-428 (515)
63 PF13738 Pyr_redox_3: Pyridine 99.8 3.2E-20 7E-25 161.1 13.9 156 23-214 1-201 (203)
64 PRK14727 putative mercuric red 99.8 2.5E-19 5.3E-24 175.6 21.3 164 18-219 15-226 (479)
65 TIGR01372 soxA sarcosine oxida 99.8 2.3E-19 4.9E-24 188.9 22.2 201 19-310 163-389 (985)
66 PRK07818 dihydrolipoamide dehy 99.8 2E-19 4.3E-24 175.8 19.7 163 19-220 4-212 (466)
67 PRK06292 dihydrolipoamide dehy 99.8 7.4E-19 1.6E-23 171.5 21.6 160 19-218 3-207 (460)
68 PF00743 FMO-like: Flavin-bind 99.8 4.7E-20 1E-24 181.4 13.1 161 20-215 2-218 (531)
69 TIGR01438 TGR thioredoxin and 99.8 1E-18 2.2E-23 171.2 22.2 163 19-220 2-219 (484)
70 PRK06327 dihydrolipoamide dehy 99.8 1E-18 2.2E-23 171.1 22.0 165 19-220 4-223 (475)
71 COG1251 NirB NAD(P)H-nitrite r 99.8 1.4E-19 3.1E-24 176.6 14.6 215 19-312 3-227 (793)
72 PTZ00153 lipoamide dehydrogena 99.8 1.3E-18 2.8E-23 174.6 21.8 165 19-220 116-352 (659)
73 PTZ00052 thioredoxin reductase 99.8 1.6E-18 3.5E-23 170.4 21.6 181 19-238 5-242 (499)
74 TIGR03169 Nterm_to_SelD pyridi 99.8 2.4E-19 5.1E-24 169.8 15.2 199 21-241 1-214 (364)
75 PTZ00318 NADH dehydrogenase-li 99.8 1.4E-18 3E-23 167.8 17.6 215 16-241 7-251 (424)
76 COG3634 AhpF Alkyl hydroperoxi 99.8 8.9E-19 1.9E-23 157.4 14.1 199 18-311 210-430 (520)
77 COG2072 TrkA Predicted flavopr 99.8 2.5E-18 5.4E-23 166.3 15.8 165 17-216 6-211 (443)
78 TIGR03452 mycothione_red mycot 99.8 2.2E-17 4.8E-22 160.7 21.0 162 19-219 2-208 (452)
79 KOG1399 Flavin-containing mono 99.7 1.9E-17 4.1E-22 158.6 13.9 149 18-180 5-207 (448)
80 KOG1335 Dihydrolipoamide dehyd 99.7 1.1E-16 2.4E-21 145.6 13.6 165 18-221 38-252 (506)
81 KOG0405 Pyridine nucleotide-di 99.7 3.8E-16 8.3E-21 140.6 16.8 165 18-221 19-230 (478)
82 TIGR03385 CoA_CoA_reduc CoA-di 99.6 1.2E-14 2.7E-19 140.5 13.6 153 33-216 1-173 (427)
83 KOG4716 Thioredoxin reductase 99.6 4.2E-14 9E-19 127.1 14.6 199 17-303 17-271 (503)
84 KOG2495 NADH-dehydrogenase (ub 99.5 7E-14 1.5E-18 129.4 13.1 193 18-221 54-273 (491)
85 COG0446 HcaD Uncharacterized N 99.5 5.6E-13 1.2E-17 127.5 16.9 164 22-219 1-175 (415)
86 PF13434 K_oxygenase: L-lysine 99.4 8.1E-12 1.7E-16 117.0 12.9 166 20-216 3-228 (341)
87 PRK09897 hypothetical protein; 99.3 1.7E-10 3.6E-15 113.8 17.2 39 19-57 1-39 (534)
88 PF07992 Pyr_redox_2: Pyridine 99.3 2.7E-12 5.8E-17 110.9 3.9 128 21-166 1-159 (201)
89 PF00070 Pyr_redox: Pyridine n 99.1 3.2E-10 6.9E-15 83.5 8.2 79 161-311 1-79 (80)
90 COG4529 Uncharacterized protei 99.1 2.9E-09 6.3E-14 101.1 16.2 168 19-213 1-231 (474)
91 COG2081 Predicted flavoprotein 99.0 4.3E-09 9.4E-14 97.7 12.5 98 18-117 2-165 (408)
92 KOG2755 Oxidoreductase [Genera 98.9 8.6E-10 1.9E-14 96.4 4.5 171 21-228 1-180 (334)
93 PF03486 HI0933_like: HI0933-l 98.9 3E-09 6.5E-14 101.8 8.3 97 20-118 1-165 (409)
94 KOG1346 Programmed cell death 98.8 5.1E-09 1.1E-13 97.0 6.5 204 17-242 176-417 (659)
95 COG3486 IucD Lysine/ornithine 98.8 4.1E-07 8.9E-12 84.7 18.2 168 18-215 4-226 (436)
96 PRK04176 ribulose-1,5-biphosph 98.7 1.1E-07 2.4E-12 85.7 11.4 100 18-119 24-173 (257)
97 TIGR00292 thiazole biosynthesi 98.6 5.3E-07 1.1E-11 81.1 10.5 39 18-58 20-58 (254)
98 PF00070 Pyr_redox: Pyridine n 98.6 1.3E-06 2.8E-11 64.1 10.7 64 21-96 1-64 (80)
99 TIGR02032 GG-red-SF geranylger 98.5 5.5E-07 1.2E-11 82.1 10.6 98 20-119 1-148 (295)
100 COG0644 FixC Dehydrogenases (f 98.5 8.5E-07 1.8E-11 85.1 11.5 100 18-119 2-152 (396)
101 COG1635 THI4 Ribulose 1,5-bisp 98.5 6.3E-07 1.4E-11 76.9 9.2 40 18-59 29-68 (262)
102 COG1249 Lpd Pyruvate/2-oxoglut 98.5 1.5E-06 3.3E-11 84.1 12.0 94 17-123 171-275 (454)
103 PLN02463 lycopene beta cyclase 98.5 1.4E-06 3.1E-11 84.6 11.8 101 16-118 25-168 (447)
104 PF01946 Thi4: Thi4 family; PD 98.5 9.9E-07 2.1E-11 76.0 9.3 42 18-61 16-57 (230)
105 TIGR00275 flavoprotein, HI0933 98.4 1.5E-06 3.3E-11 83.5 10.9 34 23-58 1-34 (400)
106 PF13450 NAD_binding_8: NAD(P) 98.4 3.5E-07 7.6E-12 65.0 4.7 37 24-62 1-37 (68)
107 PRK06847 hypothetical protein; 98.4 2.8E-06 6.2E-11 80.6 12.0 36 18-55 3-38 (375)
108 PLN02661 Putative thiazole syn 98.4 2.8E-06 6.2E-11 79.1 11.0 39 19-58 92-130 (357)
109 PRK10157 putative oxidoreducta 98.4 3.3E-06 7.1E-11 81.9 11.8 38 18-57 4-41 (428)
110 TIGR01790 carotene-cycl lycope 98.4 2.8E-06 6E-11 81.1 11.0 96 21-118 1-140 (388)
111 PRK07251 pyridine nucleotide-d 98.4 3.5E-06 7.5E-11 82.0 11.8 92 18-122 156-255 (438)
112 TIGR02028 ChlP geranylgeranyl 98.3 5.7E-06 1.2E-10 79.4 11.3 34 20-55 1-34 (398)
113 PRK10015 oxidoreductase; Provi 98.3 6E-06 1.3E-10 80.1 11.5 37 18-56 4-40 (429)
114 PRK12842 putative succinate de 98.3 2.7E-06 5.8E-11 85.6 8.8 41 18-60 8-48 (574)
115 PRK05976 dihydrolipoamide dehy 98.3 7.1E-06 1.5E-10 80.6 11.6 91 19-122 180-283 (472)
116 TIGR01350 lipoamide_DH dihydro 98.3 6.7E-06 1.5E-10 80.4 11.3 93 18-123 169-272 (461)
117 PRK07333 2-octaprenyl-6-methox 98.3 5.9E-06 1.3E-10 79.2 10.4 37 19-55 1-37 (403)
118 PF01266 DAO: FAD dependent ox 98.2 1.3E-05 2.7E-10 74.9 12.1 32 21-54 1-32 (358)
119 TIGR02053 MerA mercuric reduct 98.2 1.1E-05 2.4E-10 79.0 12.2 92 19-123 166-269 (463)
120 PRK04965 NADH:flavorubredoxin 98.2 9.7E-06 2.1E-10 77.2 11.1 92 18-121 140-240 (377)
121 PRK06912 acoL dihydrolipoamide 98.2 1.1E-05 2.4E-10 78.9 11.8 92 18-122 169-270 (458)
122 PRK08255 salicylyl-CoA 5-hydro 98.2 4.7E-06 1E-10 86.4 9.6 36 20-55 1-36 (765)
123 PRK09754 phenylpropionate diox 98.2 8.3E-06 1.8E-10 78.3 10.6 93 18-122 143-243 (396)
124 KOG3851 Sulfide:quinone oxidor 98.2 2.1E-06 4.5E-11 77.6 5.9 40 16-55 36-75 (446)
125 PRK06416 dihydrolipoamide dehy 98.2 1.2E-05 2.6E-10 78.8 11.7 92 18-122 171-274 (462)
126 PRK09564 coenzyme A disulfide 98.2 1E-05 2.2E-10 78.7 11.1 92 19-122 149-248 (444)
127 PF12831 FAD_oxidored: FAD dep 98.2 1.9E-06 4E-11 83.6 5.5 40 21-62 1-40 (428)
128 PRK13512 coenzyme A disulfide 98.2 1.1E-05 2.3E-10 78.6 10.5 91 19-122 148-243 (438)
129 TIGR03385 CoA_CoA_reduc CoA-di 98.2 1.4E-05 3E-10 77.4 11.2 93 18-122 136-235 (427)
130 TIGR02023 BchP-ChlP geranylger 98.2 1.2E-05 2.6E-10 77.0 10.5 32 20-53 1-32 (388)
131 PRK06834 hypothetical protein; 98.2 2E-05 4.3E-10 77.7 12.3 36 18-55 2-37 (488)
132 PF01494 FAD_binding_3: FAD bi 98.2 9.8E-06 2.1E-10 75.6 9.6 34 20-55 2-35 (356)
133 PRK07608 ubiquinone biosynthes 98.2 1.2E-05 2.6E-10 76.7 10.3 36 19-56 5-40 (388)
134 PRK05714 2-octaprenyl-3-methyl 98.2 9.8E-06 2.1E-10 77.9 9.7 34 19-54 2-35 (405)
135 PRK06327 dihydrolipoamide dehy 98.2 1.8E-05 3.9E-10 77.8 11.7 93 18-123 182-287 (475)
136 PF13454 NAD_binding_9: FAD-NA 98.2 1.3E-05 2.8E-10 66.7 9.0 33 23-55 1-36 (156)
137 PRK08010 pyridine nucleotide-d 98.1 2E-05 4.2E-10 76.8 11.6 92 18-122 157-256 (441)
138 PRK06370 mercuric reductase; V 98.1 1.8E-05 3.9E-10 77.5 11.4 92 18-122 170-273 (463)
139 PRK07818 dihydrolipoamide dehy 98.1 1.8E-05 4E-10 77.6 11.4 92 18-122 171-275 (466)
140 PRK06184 hypothetical protein; 98.1 1.9E-05 4.1E-10 78.2 11.6 35 19-55 3-37 (502)
141 COG1252 Ndh NADH dehydrogenase 98.1 7.9E-06 1.7E-10 77.6 8.4 89 20-118 156-261 (405)
142 PRK14694 putative mercuric red 98.1 2E-05 4.2E-10 77.4 11.5 90 19-122 178-275 (468)
143 PRK08163 salicylate hydroxylas 98.1 1.6E-05 3.4E-10 76.1 10.6 36 19-56 4-39 (396)
144 PRK08773 2-octaprenyl-3-methyl 98.1 1.3E-05 2.8E-10 76.7 9.9 36 18-55 5-40 (392)
145 PRK07236 hypothetical protein; 98.1 1E-05 2.3E-10 77.2 9.2 36 18-55 5-40 (386)
146 TIGR01421 gluta_reduc_1 glutat 98.1 2.1E-05 4.6E-10 76.7 11.4 91 19-122 166-267 (450)
147 COG1232 HemY Protoporphyrinoge 98.1 3E-06 6.5E-11 81.5 5.2 43 20-62 1-43 (444)
148 PLN00093 geranylgeranyl diphos 98.1 2.8E-05 6E-10 75.8 11.9 36 17-54 37-72 (450)
149 PRK11883 protoporphyrinogen ox 98.1 3.2E-06 6.9E-11 82.2 5.4 42 20-61 1-42 (451)
150 PF01134 GIDA: Glucose inhibit 98.1 1.6E-05 3.4E-10 75.3 9.6 29 21-51 1-29 (392)
151 TIGR01424 gluta_reduc_2 glutat 98.1 2.4E-05 5.2E-10 76.3 11.3 92 18-122 165-265 (446)
152 KOG0029 Amine oxidase [Seconda 98.1 3.6E-06 7.8E-11 82.6 5.4 45 15-61 11-55 (501)
153 PRK11728 hydroxyglutarate oxid 98.1 2.6E-05 5.7E-10 74.7 11.0 36 20-55 3-38 (393)
154 PLN02697 lycopene epsilon cycl 98.1 2.9E-05 6.3E-10 76.9 11.4 100 18-119 107-248 (529)
155 PRK05249 soluble pyridine nucl 98.1 2.7E-05 5.9E-10 76.2 11.2 92 18-122 174-274 (461)
156 PRK05192 tRNA uridine 5-carbox 98.1 2.9E-05 6.4E-10 77.4 11.3 35 18-54 3-37 (618)
157 PRK14727 putative mercuric red 98.1 3.3E-05 7.2E-10 76.0 11.7 90 19-122 188-285 (479)
158 PRK06115 dihydrolipoamide dehy 98.1 3.2E-05 7E-10 75.8 11.5 92 18-122 173-278 (466)
159 PRK06116 glutathione reductase 98.1 3.5E-05 7.6E-10 75.2 11.6 92 18-122 166-267 (450)
160 COG1233 Phytoene dehydrogenase 98.1 4.6E-06 1E-10 82.2 5.2 43 18-62 2-44 (487)
161 PRK08020 ubiF 2-octaprenyl-3-m 98.1 2.4E-05 5.2E-10 74.8 10.0 35 18-54 4-38 (391)
162 PRK13748 putative mercuric red 98.0 3.2E-05 7E-10 77.6 11.2 91 18-122 269-367 (561)
163 TIGR03329 Phn_aa_oxid putative 98.0 3.9E-05 8.5E-10 75.1 11.4 36 19-54 24-59 (460)
164 PRK05329 anaerobic glycerol-3- 98.0 3.7E-05 8.1E-10 74.1 11.0 34 19-54 2-35 (422)
165 PLN02507 glutathione reductase 98.0 4E-05 8.6E-10 75.8 11.3 91 19-122 203-302 (499)
166 PRK06617 2-octaprenyl-6-methox 98.0 4E-05 8.6E-10 73.0 10.7 32 20-53 2-33 (374)
167 PRK08244 hypothetical protein; 98.0 3.5E-05 7.6E-10 76.1 10.6 34 20-55 3-36 (493)
168 PRK07845 flavoprotein disulfid 98.0 5.1E-05 1.1E-09 74.4 11.5 92 19-123 177-277 (466)
169 PRK07588 hypothetical protein; 98.0 4.4E-05 9.6E-10 73.0 10.8 34 20-55 1-34 (391)
170 PRK06183 mhpA 3-(3-hydroxyphen 98.0 4.8E-05 1E-09 76.0 11.4 37 17-55 8-44 (538)
171 PRK11445 putative oxidoreducta 98.0 5.4E-05 1.2E-09 71.4 11.1 33 19-54 1-33 (351)
172 TIGR01438 TGR thioredoxin and 98.0 4.6E-05 1E-09 75.1 10.7 91 18-122 179-281 (484)
173 COG0446 HcaD Uncharacterized N 98.0 4.3E-05 9.4E-10 73.0 10.1 91 19-121 136-238 (415)
174 TIGR02374 nitri_red_nirB nitri 98.0 4E-05 8.6E-10 79.8 10.5 93 18-122 139-240 (785)
175 PTZ00318 NADH dehydrogenase-li 98.0 5.6E-05 1.2E-09 73.2 10.9 91 20-121 174-281 (424)
176 PRK14989 nitrite reductase sub 98.0 4.3E-05 9.2E-10 79.9 10.4 93 18-122 144-247 (847)
177 COG1148 HdrA Heterodisulfide r 98.0 1.7E-05 3.7E-10 75.4 6.6 76 18-95 123-201 (622)
178 PRK07846 mycothione reductase; 97.9 8.8E-05 1.9E-09 72.4 11.7 92 18-123 165-265 (451)
179 PRK08401 L-aspartate oxidase; 97.9 7.5E-05 1.6E-09 73.2 11.3 35 19-55 1-35 (466)
180 PTZ00058 glutathione reductase 97.9 7.5E-05 1.6E-09 74.7 11.1 91 19-122 237-338 (561)
181 PRK06467 dihydrolipoamide dehy 97.9 7.5E-05 1.6E-09 73.4 10.9 91 18-122 173-276 (471)
182 COG3349 Uncharacterized conser 97.9 1.1E-05 2.4E-10 77.7 4.9 41 20-62 1-41 (485)
183 TIGR01423 trypano_reduc trypan 97.9 8.6E-05 1.9E-09 73.1 11.2 94 18-122 186-290 (486)
184 PRK13977 myosin-cross-reactive 97.9 1.9E-05 4.1E-10 78.1 6.4 47 15-61 18-66 (576)
185 PRK07208 hypothetical protein; 97.9 1.3E-05 2.9E-10 78.7 5.4 42 18-61 3-44 (479)
186 PRK05945 sdhA succinate dehydr 97.9 8.4E-05 1.8E-09 74.8 11.0 38 19-56 3-40 (575)
187 KOG1336 Monodehydroascorbate/f 97.9 9.8E-05 2.1E-09 70.4 10.6 97 18-126 212-319 (478)
188 PLN02576 protoporphyrinogen ox 97.9 1.6E-05 3.4E-10 78.5 5.6 43 17-61 10-53 (496)
189 PTZ00052 thioredoxin reductase 97.9 0.00011 2.3E-09 72.8 11.4 90 19-122 182-280 (499)
190 PRK07233 hypothetical protein; 97.9 1.5E-05 3.3E-10 77.0 4.9 39 21-61 1-39 (434)
191 TIGR03452 mycothione_red mycot 97.9 0.00012 2.5E-09 71.6 11.0 91 18-122 168-267 (452)
192 KOG1276 Protoporphyrinogen oxi 97.9 2E-05 4.4E-10 73.9 5.4 46 17-62 9-54 (491)
193 PRK06292 dihydrolipoamide dehy 97.9 0.00013 2.9E-09 71.3 11.5 92 18-123 168-271 (460)
194 PTZ00153 lipoamide dehydrogena 97.9 0.00013 2.7E-09 74.3 11.5 91 19-122 312-429 (659)
195 TIGR00562 proto_IX_ox protopor 97.9 1.7E-05 3.7E-10 77.5 5.1 43 19-61 2-46 (462)
196 PRK12416 protoporphyrinogen ox 97.9 1.9E-05 4.1E-10 77.3 5.4 42 20-61 2-47 (463)
197 KOG1335 Dihydrolipoamide dehyd 97.8 5.1E-05 1.1E-09 70.3 7.6 93 17-122 209-316 (506)
198 PLN02268 probable polyamine ox 97.8 2E-05 4.3E-10 76.5 5.2 40 20-61 1-40 (435)
199 PRK01438 murD UDP-N-acetylmura 97.8 8.1E-05 1.7E-09 73.3 9.5 80 18-124 15-94 (480)
200 PLN02546 glutathione reductase 97.8 0.00014 3.1E-09 72.7 11.2 92 18-122 251-352 (558)
201 TIGR02733 desat_CrtD C-3',4' d 97.8 2.1E-05 4.5E-10 77.7 5.3 40 20-61 2-41 (492)
202 PRK06996 hypothetical protein; 97.8 0.00014 3.1E-09 69.7 10.7 41 14-54 6-48 (398)
203 PF05834 Lycopene_cycl: Lycope 97.8 0.00016 3.5E-09 68.9 10.6 36 21-56 1-36 (374)
204 TIGR03169 Nterm_to_SelD pyridi 97.8 0.00019 4E-09 68.0 10.6 92 18-121 144-244 (364)
205 TIGR02734 crtI_fam phytoene de 97.8 2.4E-05 5.3E-10 77.4 4.6 38 22-61 1-38 (502)
206 PRK07804 L-aspartate oxidase; 97.8 0.00021 4.6E-09 71.4 11.2 38 18-57 15-52 (541)
207 PRK10262 thioredoxin reductase 97.8 0.00022 4.8E-09 66.3 10.7 90 18-122 145-250 (321)
208 PRK07364 2-octaprenyl-6-methox 97.8 3.8E-05 8.3E-10 73.9 5.7 37 17-55 16-52 (415)
209 COG3380 Predicted NAD/FAD-depe 97.7 4.9E-05 1.1E-09 67.5 5.0 39 20-60 2-40 (331)
210 PRK06753 hypothetical protein; 97.7 4E-05 8.7E-10 72.7 4.9 34 20-55 1-34 (373)
211 TIGR01789 lycopene_cycl lycope 97.7 0.00019 4.1E-09 68.3 9.4 38 21-58 1-38 (370)
212 TIGR00031 UDP-GALP_mutase UDP- 97.7 5E-05 1.1E-09 72.1 5.3 40 20-61 2-41 (377)
213 TIGR02731 phytoene_desat phyto 97.7 4.3E-05 9.3E-10 74.6 5.0 38 21-60 1-38 (453)
214 PRK07045 putative monooxygenas 97.7 4.8E-05 1E-09 72.7 5.2 36 18-55 4-39 (388)
215 KOG0685 Flavin-containing amin 97.7 5.7E-05 1.2E-09 71.9 5.4 42 18-60 20-61 (498)
216 TIGR00136 gidA glucose-inhibit 97.7 0.00032 7E-09 70.0 10.8 33 20-54 1-33 (617)
217 PRK06263 sdhA succinate dehydr 97.7 0.00028 6E-09 70.6 10.5 34 19-55 7-40 (543)
218 PLN02568 polyamine oxidase 97.6 7.5E-05 1.6E-09 74.4 6.0 44 18-61 4-50 (539)
219 TIGR00551 nadB L-aspartate oxi 97.6 0.00037 8.1E-09 68.8 10.8 34 20-56 3-36 (488)
220 TIGR02730 carot_isom carotene 97.6 6.8E-05 1.5E-09 74.1 5.2 41 20-62 1-41 (493)
221 COG2907 Predicted NAD/FAD-bind 97.6 5.6E-05 1.2E-09 69.3 3.9 41 17-60 6-46 (447)
222 PRK07494 2-octaprenyl-6-methox 97.6 8.9E-05 1.9E-09 70.7 5.4 37 17-55 5-41 (388)
223 PF03486 HI0933_like: HI0933-l 97.6 0.00019 4.2E-09 68.9 7.5 115 161-316 2-155 (409)
224 TIGR03378 glycerol3P_GlpB glyc 97.6 0.0046 1E-07 59.3 16.7 33 20-54 1-33 (419)
225 KOG2495 NADH-dehydrogenase (ub 97.6 0.00012 2.6E-09 68.9 5.6 92 20-122 219-331 (491)
226 PRK07538 hypothetical protein; 97.6 8.8E-05 1.9E-09 71.5 4.9 34 20-55 1-34 (413)
227 PRK08013 oxidoreductase; Provi 97.6 9.6E-05 2.1E-09 71.0 5.2 35 19-55 3-37 (400)
228 PRK08849 2-octaprenyl-3-methyl 97.5 9.7E-05 2.1E-09 70.5 5.1 34 19-54 3-36 (384)
229 PLN02529 lysine-specific histo 97.5 0.00011 2.4E-09 75.3 5.6 41 18-60 159-199 (738)
230 TIGR01988 Ubi-OHases Ubiquinon 97.5 9.1E-05 2E-09 70.3 4.7 33 21-55 1-33 (385)
231 PRK05868 hypothetical protein; 97.5 0.00011 2.3E-09 70.0 5.2 35 19-55 1-35 (372)
232 PRK09126 hypothetical protein; 97.5 9.8E-05 2.1E-09 70.5 4.8 35 19-55 3-37 (392)
233 COG0654 UbiH 2-polyprenyl-6-me 97.5 0.00011 2.3E-09 70.4 4.7 33 19-53 2-34 (387)
234 PRK05732 2-octaprenyl-6-methox 97.5 0.00011 2.3E-09 70.3 4.7 34 18-53 2-38 (395)
235 TIGR02360 pbenz_hydroxyl 4-hyd 97.5 0.00012 2.7E-09 70.0 4.9 35 19-55 2-36 (390)
236 TIGR01373 soxB sarcosine oxida 97.5 0.00018 3.9E-09 69.2 5.9 50 5-55 16-66 (407)
237 PRK06475 salicylate hydroxylas 97.5 0.00014 3E-09 69.9 5.0 34 20-55 3-36 (400)
238 KOG2415 Electron transfer flav 97.5 0.00011 2.5E-09 68.8 4.1 44 18-61 75-122 (621)
239 PLN02676 polyamine oxidase 97.5 0.00016 3.5E-09 71.2 5.5 43 18-62 25-68 (487)
240 TIGR03219 salicylate_mono sali 97.5 0.00017 3.6E-09 69.6 5.3 36 20-56 1-36 (414)
241 TIGR02732 zeta_caro_desat caro 97.4 0.00014 2.9E-09 71.6 4.7 39 21-61 1-39 (474)
242 PLN02487 zeta-carotene desatur 97.4 0.00019 4.2E-09 71.8 5.8 41 19-61 75-115 (569)
243 PRK07190 hypothetical protein; 97.4 0.00019 4.2E-09 70.7 5.4 36 18-55 4-39 (487)
244 PRK06126 hypothetical protein; 97.4 0.0002 4.3E-09 71.7 5.6 37 17-55 5-41 (545)
245 TIGR03140 AhpF alkyl hydropero 97.4 0.001 2.2E-08 66.2 10.5 86 18-122 351-452 (515)
246 PLN02328 lysine-specific histo 97.4 0.0002 4.4E-09 73.9 5.6 41 18-60 237-277 (808)
247 KOG2820 FAD-dependent oxidored 97.4 0.00099 2.1E-08 61.1 9.3 38 17-56 5-42 (399)
248 COG0493 GltD NADPH-dependent g 97.4 0.0006 1.3E-08 66.4 8.4 145 19-214 5-157 (457)
249 PRK08243 4-hydroxybenzoate 3-m 97.4 0.00018 3.9E-09 68.9 4.8 35 19-55 2-36 (392)
250 COG2081 Predicted flavoprotein 97.4 0.002 4.4E-08 60.5 11.3 111 160-312 4-151 (408)
251 PRK12409 D-amino acid dehydrog 97.4 0.00025 5.4E-09 68.3 5.5 34 20-55 2-35 (410)
252 PRK06185 hypothetical protein; 97.4 0.00022 4.7E-09 68.5 4.9 35 18-54 5-39 (407)
253 PLN02612 phytoene desaturase 97.4 0.00028 6.2E-09 70.9 5.8 41 18-60 92-132 (567)
254 PLN02985 squalene monooxygenas 97.3 0.00027 5.9E-09 70.1 5.5 36 17-54 41-76 (514)
255 PRK05335 tRNA (uracil-5-)-meth 97.3 0.00026 5.5E-09 67.9 5.0 35 19-55 2-36 (436)
256 PRK08850 2-octaprenyl-6-methox 97.3 0.00025 5.3E-09 68.2 4.9 33 19-53 4-36 (405)
257 COG0562 Glf UDP-galactopyranos 97.3 0.00054 1.2E-08 62.4 6.6 41 19-61 1-41 (374)
258 PF00890 FAD_binding_2: FAD bi 97.3 0.00023 5E-09 68.6 4.7 36 21-58 1-36 (417)
259 COG1635 THI4 Ribulose 1,5-bisp 97.3 0.0016 3.6E-08 56.3 9.2 111 158-312 29-151 (262)
260 TIGR01989 COQ6 Ubiquinone bios 97.3 0.00027 5.8E-09 68.8 4.8 32 20-53 1-36 (437)
261 PRK05257 malate:quinone oxidor 97.3 0.00032 6.9E-09 69.2 5.3 39 17-55 3-41 (494)
262 TIGR01292 TRX_reduct thioredox 97.3 0.0015 3.2E-08 59.6 9.5 86 18-122 140-240 (300)
263 TIGR01316 gltA glutamate synth 97.3 0.00097 2.1E-08 65.1 8.6 36 18-55 271-306 (449)
264 PLN02927 antheraxanthin epoxid 97.3 0.00028 6.1E-09 71.5 4.8 36 17-54 79-114 (668)
265 COG1231 Monoamine oxidase [Ami 97.3 0.00042 9.2E-09 66.0 5.5 42 17-60 5-46 (450)
266 PRK06481 fumarate reductase fl 97.3 0.00036 7.8E-09 69.2 5.3 38 19-58 61-98 (506)
267 COG1004 Ugd Predicted UDP-gluc 97.3 0.00089 1.9E-08 62.8 7.4 86 20-117 1-86 (414)
268 TIGR01984 UbiH 2-polyprenyl-6- 97.2 0.00032 6.9E-09 66.7 4.6 34 21-55 1-34 (382)
269 PRK08132 FAD-dependent oxidore 97.2 0.00042 9.1E-09 69.4 5.6 36 18-55 22-57 (547)
270 COG0445 GidA Flavin-dependent 97.2 0.00096 2.1E-08 64.9 7.4 33 19-53 4-36 (621)
271 PRK11259 solA N-methyltryptoph 97.2 0.00045 9.7E-09 65.5 5.3 36 19-56 3-38 (376)
272 TIGR01377 soxA_mon sarcosine o 97.2 0.00044 9.5E-09 65.7 5.1 34 20-55 1-34 (380)
273 COG0665 DadA Glycine/D-amino a 97.2 0.0005 1.1E-08 65.4 5.5 37 18-56 3-39 (387)
274 PRK12831 putative oxidoreducta 97.2 0.0025 5.5E-08 62.5 10.3 36 17-54 279-314 (464)
275 PRK12770 putative glutamate sy 97.2 0.0013 2.8E-08 62.1 8.0 87 19-122 172-288 (352)
276 KOG2960 Protein involved in th 97.2 6.4E-05 1.4E-09 64.4 -0.8 40 19-58 76-115 (328)
277 PRK08274 tricarballylate dehyd 97.2 0.00053 1.2E-08 67.2 5.3 35 19-55 4-38 (466)
278 PRK00711 D-amino acid dehydrog 97.2 0.00049 1.1E-08 66.2 5.0 34 20-55 1-34 (416)
279 PLN03000 amine oxidase 97.2 0.00057 1.2E-08 70.9 5.6 41 18-60 183-223 (881)
280 PRK12266 glpD glycerol-3-phosp 97.2 0.00062 1.3E-08 67.6 5.6 37 18-56 5-41 (508)
281 PRK07121 hypothetical protein; 97.1 0.00058 1.3E-08 67.5 5.4 39 18-58 19-57 (492)
282 PRK08294 phenol 2-monooxygenas 97.1 0.00053 1.1E-08 69.8 5.0 36 18-55 31-67 (634)
283 TIGR01320 mal_quin_oxido malat 97.1 0.00055 1.2E-08 67.4 5.0 36 20-55 1-36 (483)
284 PRK12839 hypothetical protein; 97.1 0.0007 1.5E-08 68.1 5.8 43 15-59 4-46 (572)
285 COG0579 Predicted dehydrogenas 97.1 0.00067 1.5E-08 65.1 5.2 40 18-57 2-41 (429)
286 PTZ00367 squalene epoxidase; P 97.1 0.00066 1.4E-08 68.0 5.4 35 18-54 32-66 (567)
287 PRK13369 glycerol-3-phosphate 97.1 0.00071 1.5E-08 67.1 5.6 37 18-56 5-41 (502)
288 PTZ00383 malate:quinone oxidor 97.1 0.00074 1.6E-08 66.6 5.7 40 16-55 42-81 (497)
289 KOG2404 Fumarate reductase, fl 97.1 0.0018 3.9E-08 59.0 7.6 37 21-59 11-47 (477)
290 TIGR03364 HpnW_proposed FAD de 97.1 0.00067 1.5E-08 64.1 5.2 34 20-55 1-34 (365)
291 TIGR00137 gid_trmFO tRNA:m(5)U 97.1 0.00063 1.4E-08 65.5 4.7 34 20-55 1-34 (433)
292 PLN02976 amine oxidase 97.1 0.00076 1.6E-08 72.7 5.6 44 16-61 690-733 (1713)
293 PRK12837 3-ketosteroid-delta-1 97.0 0.00076 1.7E-08 67.0 5.1 37 19-58 7-43 (513)
294 PRK14106 murD UDP-N-acetylmura 97.0 0.003 6.5E-08 61.6 9.1 75 18-117 4-78 (450)
295 PRK08641 sdhA succinate dehydr 97.0 0.00081 1.8E-08 67.9 5.2 36 19-56 3-38 (589)
296 PF04820 Trp_halogenase: Trypt 97.0 0.00097 2.1E-08 65.2 5.6 36 21-56 1-37 (454)
297 PRK15317 alkyl hydroperoxide r 97.0 0.0036 7.8E-08 62.3 9.7 86 18-122 350-451 (517)
298 TIGR01813 flavo_cyto_c flavocy 97.0 0.00078 1.7E-08 65.5 4.8 37 21-58 1-37 (439)
299 KOG0405 Pyridine nucleotide-di 97.0 0.0018 3.9E-08 59.6 6.7 99 12-123 182-290 (478)
300 PRK07057 sdhA succinate dehydr 97.0 0.00098 2.1E-08 67.4 5.4 36 18-55 11-46 (591)
301 PRK11749 dihydropyrimidine deh 97.0 0.0045 9.8E-08 60.6 9.9 87 18-121 272-388 (457)
302 COG0029 NadB Aspartate oxidase 97.0 0.0068 1.5E-07 58.5 10.5 32 21-55 9-40 (518)
303 PRK11101 glpA sn-glycerol-3-ph 97.0 0.0011 2.4E-08 66.3 5.6 35 19-55 6-40 (546)
304 PF13434 K_oxygenase: L-lysine 97.0 0.0024 5.2E-08 60.0 7.5 40 16-55 187-226 (341)
305 PRK07843 3-ketosteroid-delta-1 97.0 0.0012 2.5E-08 66.4 5.6 39 18-58 6-44 (557)
306 TIGR01176 fum_red_Fp fumarate 97.0 0.00099 2.2E-08 67.1 5.0 39 19-57 3-41 (580)
307 PRK09231 fumarate reductase fl 96.9 0.001 2.2E-08 67.1 5.1 38 19-56 4-41 (582)
308 PRK08275 putative oxidoreducta 96.9 0.0011 2.3E-08 66.6 5.2 37 19-55 9-45 (554)
309 PRK12834 putative FAD-binding 96.9 0.001 2.3E-08 66.6 5.1 38 19-58 4-43 (549)
310 PRK01747 mnmC bifunctional tRN 96.9 0.0012 2.5E-08 67.8 5.6 34 19-54 260-293 (662)
311 PRK04176 ribulose-1,5-biphosph 96.9 0.0069 1.5E-07 54.6 9.9 109 160-311 26-145 (257)
312 KOG2614 Kynurenine 3-monooxyge 96.9 0.0012 2.6E-08 62.1 5.0 36 19-56 2-37 (420)
313 TIGR00292 thiazole biosynthesi 96.9 0.0056 1.2E-07 55.1 9.1 108 160-311 22-142 (254)
314 TIGR01812 sdhA_frdA_Gneg succi 96.9 0.0012 2.5E-08 66.5 4.8 34 21-56 1-34 (566)
315 PRK12844 3-ketosteroid-delta-1 96.9 0.0014 3E-08 65.9 5.3 39 19-59 6-44 (557)
316 PTZ00363 rab-GDP dissociation 96.9 0.0015 3.2E-08 63.5 5.3 42 18-61 3-44 (443)
317 PRK12835 3-ketosteroid-delta-1 96.9 0.0014 3E-08 66.1 5.2 38 19-58 11-48 (584)
318 PRK07803 sdhA succinate dehydr 96.9 0.0014 3E-08 66.7 5.2 36 19-56 8-43 (626)
319 PRK12845 3-ketosteroid-delta-1 96.9 0.0016 3.5E-08 65.4 5.5 41 17-60 14-54 (564)
320 PRK13339 malate:quinone oxidor 96.8 0.0017 3.7E-08 64.0 5.5 38 18-55 5-42 (497)
321 PLN02464 glycerol-3-phosphate 96.8 0.0016 3.4E-08 66.2 5.5 37 18-56 70-106 (627)
322 PRK12778 putative bifunctional 96.8 0.0064 1.4E-07 63.3 9.9 35 18-54 569-604 (752)
323 PRK06452 sdhA succinate dehydr 96.8 0.0017 3.7E-08 65.3 5.3 35 19-55 5-39 (566)
324 PRK12810 gltD glutamate syntha 96.8 0.0083 1.8E-07 59.0 9.9 38 18-56 280-317 (471)
325 COG3573 Predicted oxidoreducta 96.8 0.012 2.7E-07 54.0 10.0 35 19-55 5-39 (552)
326 PTZ00139 Succinate dehydrogena 96.7 0.0017 3.7E-08 65.9 4.9 37 19-57 29-65 (617)
327 PRK07573 sdhA succinate dehydr 96.7 0.0021 4.6E-08 65.5 5.4 36 19-56 35-70 (640)
328 PF00732 GMC_oxred_N: GMC oxid 96.7 0.0016 3.5E-08 59.7 4.1 35 20-55 1-35 (296)
329 TIGR02462 pyranose_ox pyranose 96.7 0.0021 4.6E-08 63.9 5.1 39 20-60 1-39 (544)
330 PRK09078 sdhA succinate dehydr 96.7 0.0019 4.2E-08 65.3 4.9 36 18-55 11-46 (598)
331 PRK06175 L-aspartate oxidase; 96.7 0.0019 4.2E-08 62.7 4.7 37 19-58 4-40 (433)
332 PLN00128 Succinate dehydrogena 96.7 0.002 4.4E-08 65.5 4.9 36 19-56 50-85 (635)
333 PRK06854 adenylylsulfate reduc 96.7 0.002 4.4E-08 65.3 4.8 37 19-55 11-47 (608)
334 PRK06069 sdhA succinate dehydr 96.7 0.0024 5.2E-08 64.4 5.2 39 19-57 5-44 (577)
335 PRK08958 sdhA succinate dehydr 96.7 0.0022 4.7E-08 64.8 4.9 36 19-56 7-42 (588)
336 PF01946 Thi4: Thi4 family; PD 96.7 0.0061 1.3E-07 52.9 6.9 110 160-312 18-138 (230)
337 PRK06134 putative FAD-binding 96.7 0.0026 5.7E-08 64.1 5.5 40 18-59 11-50 (581)
338 COG0569 TrkA K+ transport syst 96.7 0.0029 6.4E-08 55.8 5.1 74 20-117 1-76 (225)
339 TIGR01470 cysG_Nterm siroheme 96.6 0.0058 1.3E-07 53.1 6.7 34 18-53 8-41 (205)
340 PRK02705 murD UDP-N-acetylmura 96.6 0.0068 1.5E-07 59.3 7.9 77 21-117 2-78 (459)
341 PRK07395 L-aspartate oxidase; 96.6 0.0029 6.3E-08 63.4 5.2 38 18-58 8-45 (553)
342 PRK08626 fumarate reductase fl 96.6 0.0027 5.9E-08 64.9 5.0 36 19-56 5-40 (657)
343 PRK08071 L-aspartate oxidase; 96.6 0.0028 6.2E-08 62.9 4.9 37 19-58 3-39 (510)
344 PF03721 UDPG_MGDP_dh_N: UDP-g 96.5 0.0025 5.4E-08 54.5 3.8 86 20-117 1-86 (185)
345 COG0654 UbiH 2-polyprenyl-6-me 96.5 0.018 3.9E-07 55.1 9.9 120 160-312 3-146 (387)
346 PRK12843 putative FAD-binding 96.5 0.0037 8.1E-08 63.0 5.4 41 18-60 15-55 (578)
347 PRK07236 hypothetical protein; 96.5 0.016 3.5E-07 55.3 9.6 55 158-233 5-64 (386)
348 PTZ00306 NADH-dependent fumara 96.5 0.0036 7.8E-08 68.1 5.5 39 19-59 409-447 (1167)
349 KOG4254 Phytoene desaturase [C 96.5 0.0048 1E-07 58.7 5.5 54 17-72 12-66 (561)
350 TIGR01811 sdhA_Bsu succinate d 96.5 0.0028 6E-08 64.2 4.2 31 22-54 1-31 (603)
351 TIGR03143 AhpF_homolog putativ 96.5 0.016 3.5E-07 58.2 9.6 87 18-122 142-248 (555)
352 COG1148 HdrA Heterodisulfide r 96.4 0.0073 1.6E-07 58.0 6.2 38 158-216 123-160 (622)
353 PF12831 FAD_oxidored: FAD dep 96.4 0.0032 7E-08 61.1 4.0 30 279-311 101-130 (428)
354 PRK12779 putative bifunctional 96.3 0.023 5E-07 60.5 10.3 35 18-54 446-480 (944)
355 TIGR01318 gltD_gamma_fam gluta 96.3 0.029 6.3E-07 55.1 10.4 37 18-55 281-317 (467)
356 TIGR02061 aprA adenosine phosp 96.3 0.0046 9.9E-08 62.6 4.8 33 21-55 1-37 (614)
357 PRK09077 L-aspartate oxidase; 96.3 0.0057 1.2E-07 61.2 5.3 38 18-58 7-44 (536)
358 PRK07045 putative monooxygenas 96.3 0.031 6.7E-07 53.3 10.1 35 160-215 6-40 (388)
359 PRK08205 sdhA succinate dehydr 96.2 0.006 1.3E-07 61.6 5.1 34 19-55 5-38 (583)
360 PRK12769 putative oxidoreducta 96.2 0.033 7E-07 57.2 10.4 36 18-54 467-502 (654)
361 PLN02815 L-aspartate oxidase 96.2 0.0067 1.5E-07 61.3 5.3 36 19-57 29-64 (594)
362 COG1251 NirB NAD(P)H-nitrite r 96.1 0.013 2.9E-07 59.1 6.8 93 18-122 144-245 (793)
363 KOG2311 NAD/FAD-utilizing prot 96.1 0.0075 1.6E-07 57.8 4.8 37 15-53 24-60 (679)
364 COG0578 GlpA Glycerol-3-phosph 96.1 0.0086 1.9E-07 59.0 5.4 40 17-58 10-49 (532)
365 PRK09853 putative selenate red 96.1 0.04 8.7E-07 58.5 10.5 37 18-54 667-703 (1019)
366 PLN02172 flavin-containing mon 96.1 0.017 3.7E-07 56.6 7.3 35 18-54 203-237 (461)
367 PRK07364 2-octaprenyl-6-methox 96.1 0.063 1.4E-06 51.6 11.2 36 159-215 18-53 (415)
368 PRK12814 putative NADPH-depend 96.1 0.039 8.4E-07 56.5 10.1 37 17-54 321-357 (652)
369 PF01134 GIDA: Glucose inhibit 96.1 0.018 4E-07 54.7 7.1 115 161-312 1-136 (392)
370 COG1053 SdhA Succinate dehydro 96.0 0.0087 1.9E-07 59.9 5.1 37 18-56 5-41 (562)
371 KOG1298 Squalene monooxygenase 96.0 0.009 1.9E-07 55.9 4.7 35 17-53 43-77 (509)
372 TIGR01372 soxA sarcosine oxida 96.0 0.043 9.4E-07 58.9 10.4 85 18-122 316-413 (985)
373 PRK06847 hypothetical protein; 96.0 0.051 1.1E-06 51.4 10.0 36 158-214 3-38 (375)
374 COG2509 Uncharacterized FAD-de 95.9 0.082 1.8E-06 50.7 10.5 36 18-53 17-55 (486)
375 PRK02106 choline dehydrogenase 95.9 0.012 2.5E-07 59.2 5.2 36 18-54 4-39 (560)
376 PRK06126 hypothetical protein; 95.8 0.08 1.7E-06 53.0 10.9 35 159-214 7-41 (545)
377 COG1086 Predicted nucleoside-d 95.8 0.052 1.1E-06 53.4 8.9 49 16-64 113-161 (588)
378 PLN02661 Putative thiazole syn 95.8 0.046 1E-06 51.3 8.3 111 159-311 92-213 (357)
379 PRK06617 2-octaprenyl-6-methox 95.7 0.08 1.7E-06 50.3 10.2 32 161-213 3-34 (374)
380 PRK13800 putative oxidoreducta 95.7 0.011 2.3E-07 62.8 4.6 35 19-55 13-47 (897)
381 TIGR00275 flavoprotein, HI0933 95.7 0.051 1.1E-06 52.2 8.9 18 163-180 1-18 (400)
382 PRK06185 hypothetical protein; 95.7 0.077 1.7E-06 50.8 9.9 35 159-214 6-40 (407)
383 PF13241 NAD_binding_7: Putati 95.6 0.014 3E-07 44.8 3.7 34 18-53 6-39 (103)
384 PRK07512 L-aspartate oxidase; 95.6 0.013 2.8E-07 58.3 4.5 34 18-55 8-41 (513)
385 COG0492 TrxB Thioredoxin reduc 95.6 0.095 2.1E-06 48.5 9.8 87 17-121 141-239 (305)
386 PLN02353 probable UDP-glucose 95.6 0.069 1.5E-06 52.4 9.3 37 19-55 1-37 (473)
387 COG3075 GlpB Anaerobic glycero 95.5 0.017 3.8E-07 53.0 4.4 33 19-53 2-34 (421)
388 PRK01438 murD UDP-N-acetylmura 95.5 0.032 7E-07 54.9 6.8 58 158-240 15-72 (480)
389 KOG1346 Programmed cell death 95.5 0.063 1.4E-06 50.9 8.0 93 19-122 347-451 (659)
390 PRK08773 2-octaprenyl-3-methyl 95.5 0.036 7.9E-07 52.9 6.8 34 159-213 6-39 (392)
391 PRK05335 tRNA (uracil-5-)-meth 95.5 0.018 4E-07 55.4 4.7 35 160-215 3-37 (436)
392 PF06100 Strep_67kDa_ant: Stre 95.5 0.021 4.6E-07 55.4 5.1 42 19-60 2-45 (500)
393 PRK08244 hypothetical protein; 95.5 0.13 2.8E-06 50.8 10.9 35 160-215 3-37 (493)
394 TIGR00137 gid_trmFO tRNA:m(5)U 95.5 0.018 3.8E-07 55.6 4.5 36 161-217 2-37 (433)
395 COG0771 MurD UDP-N-acetylmuram 95.4 0.088 1.9E-06 51.0 9.1 161 19-216 7-171 (448)
396 PRK07190 hypothetical protein; 95.4 0.14 3E-06 50.7 10.6 34 160-214 6-39 (487)
397 PRK10015 oxidoreductase; Provi 95.4 0.11 2.4E-06 50.5 9.8 35 160-215 6-40 (429)
398 PRK12809 putative oxidoreducta 95.4 0.031 6.7E-07 57.1 6.2 62 158-240 309-382 (639)
399 TIGR01317 GOGAT_sm_gam glutama 95.4 0.029 6.2E-07 55.4 5.8 62 158-240 142-215 (485)
400 PF01210 NAD_Gly3P_dh_N: NAD-d 95.3 0.025 5.5E-07 46.9 4.5 32 21-54 1-32 (157)
401 KOG0029 Amine oxidase [Seconda 95.3 0.021 4.6E-07 56.4 4.6 37 158-215 14-50 (501)
402 PF00743 FMO-like: Flavin-bind 95.3 0.063 1.4E-06 53.6 8.0 35 18-54 182-216 (531)
403 PRK08850 2-octaprenyl-6-methox 95.3 0.11 2.4E-06 49.9 9.4 32 160-212 5-36 (405)
404 PF13450 NAD_binding_8: NAD(P) 95.3 0.024 5.3E-07 39.9 3.7 31 164-215 1-31 (68)
405 PF13241 NAD_binding_7: Putati 95.3 0.031 6.8E-07 42.8 4.5 35 158-213 6-40 (103)
406 PRK05192 tRNA uridine 5-carbox 95.2 0.062 1.3E-06 54.1 7.6 31 161-212 6-36 (618)
407 PRK06834 hypothetical protein; 95.2 0.16 3.5E-06 50.1 10.5 34 160-214 4-37 (488)
408 TIGR01810 betA choline dehydro 95.1 0.023 4.9E-07 56.8 4.3 33 21-54 1-33 (532)
409 PRK06719 precorrin-2 dehydroge 95.1 0.041 8.9E-07 45.7 5.1 34 18-53 12-45 (157)
410 PLN02852 ferredoxin-NADP+ redu 95.1 0.092 2E-06 51.8 8.3 62 158-238 25-99 (491)
411 KOG2665 Predicted FAD-dependen 95.1 0.022 4.8E-07 52.0 3.5 39 18-56 47-85 (453)
412 KOG2852 Possible oxidoreductas 95.1 0.014 3E-07 52.6 2.2 41 17-57 8-52 (380)
413 PRK10157 putative oxidoreducta 95.0 0.15 3.3E-06 49.5 9.4 35 160-215 6-40 (428)
414 KOG4716 Thioredoxin reductase 95.0 0.024 5.3E-07 52.2 3.6 91 14-117 193-298 (503)
415 KOG1298 Squalene monooxygenase 95.0 0.11 2.5E-06 48.7 8.0 119 160-311 46-187 (509)
416 PF01488 Shikimate_DH: Shikima 95.0 0.046 1E-06 44.1 4.9 36 158-213 11-46 (135)
417 PRK07333 2-octaprenyl-6-methox 95.0 0.17 3.6E-06 48.4 9.6 34 161-214 3-37 (403)
418 PRK08274 tricarballylate dehyd 94.9 0.28 6.1E-06 48.1 11.3 28 280-310 143-170 (466)
419 TIGR01470 cysG_Nterm siroheme 94.9 0.1 2.2E-06 45.4 7.2 52 158-237 8-59 (205)
420 TIGR03315 Se_ygfK putative sel 94.9 0.074 1.6E-06 56.7 7.4 60 158-238 536-607 (1012)
421 PRK06481 fumarate reductase fl 94.9 0.3 6.5E-06 48.5 11.4 29 280-311 202-230 (506)
422 PRK12775 putative trifunctiona 94.8 0.067 1.5E-06 57.4 7.1 61 158-239 429-501 (1006)
423 TIGR02485 CobZ_N-term precorri 94.8 0.025 5.4E-07 54.9 3.4 30 24-55 1-30 (432)
424 PLN02463 lycopene beta cyclase 94.8 0.19 4.2E-06 49.0 9.6 34 160-214 29-62 (447)
425 KOG0399 Glutamate synthase [Am 94.8 0.13 2.8E-06 54.4 8.5 40 155-215 1781-1820(2142)
426 PRK07608 ubiquinone biosynthes 94.7 0.12 2.5E-06 49.2 7.6 35 160-215 6-40 (388)
427 PRK01710 murD UDP-N-acetylmura 94.6 0.11 2.4E-06 50.8 7.5 74 19-117 14-87 (458)
428 PRK06718 precorrin-2 dehydroge 94.6 0.063 1.4E-06 46.5 5.2 34 18-53 9-42 (202)
429 KOG3923 D-aspartate oxidase [A 94.6 0.048 1E-06 49.4 4.3 38 18-55 2-44 (342)
430 PF02254 TrkA_N: TrkA-N domain 94.5 0.05 1.1E-06 42.3 4.0 71 22-117 1-72 (116)
431 PF06039 Mqo: Malate:quinone o 94.5 0.06 1.3E-06 52.0 5.0 39 18-56 2-40 (488)
432 PRK06996 hypothetical protein; 94.4 0.29 6.2E-06 46.9 9.8 37 158-214 10-49 (398)
433 PLN02785 Protein HOTHEAD 94.3 0.059 1.3E-06 54.4 4.9 34 18-54 54-87 (587)
434 PF01262 AlaDh_PNT_C: Alanine 94.2 0.083 1.8E-06 44.3 4.9 35 18-54 19-53 (168)
435 COG2303 BetA Choline dehydroge 94.1 0.066 1.4E-06 53.6 4.8 36 17-54 5-40 (542)
436 PF01494 FAD_binding_3: FAD bi 94.1 0.06 1.3E-06 49.9 4.3 35 161-216 3-37 (356)
437 PRK12771 putative glutamate sy 94.1 0.12 2.6E-06 52.1 6.6 64 156-241 134-210 (564)
438 PTZ00188 adrenodoxin reductase 94.1 0.075 1.6E-06 52.1 4.9 37 158-214 38-74 (506)
439 PF01488 Shikimate_DH: Shikima 94.0 0.11 2.3E-06 42.0 5.0 34 18-53 11-45 (135)
440 PRK11883 protoporphyrinogen ox 94.0 0.069 1.5E-06 51.8 4.5 21 160-180 1-21 (451)
441 PF02737 3HCDH_N: 3-hydroxyacy 93.9 0.097 2.1E-06 44.5 4.7 33 21-55 1-33 (180)
442 COG0644 FixC Dehydrogenases (f 93.9 0.24 5.2E-06 47.5 8.0 36 160-216 4-39 (396)
443 PF00056 Ldh_1_N: lactate/mala 93.8 0.13 2.8E-06 41.9 5.2 35 20-54 1-36 (141)
444 PRK06719 precorrin-2 dehydroge 93.8 0.098 2.1E-06 43.4 4.5 23 158-180 12-34 (157)
445 COG1893 ApbA Ketopantoate redu 93.8 0.22 4.8E-06 46.1 7.3 33 20-54 1-33 (307)
446 PRK09496 trkA potassium transp 93.8 0.097 2.1E-06 51.0 5.1 34 20-55 1-34 (453)
447 COG1206 Gid NAD(FAD)-utilizing 93.7 0.071 1.5E-06 49.1 3.8 35 19-55 3-37 (439)
448 PRK12409 D-amino acid dehydrog 93.7 0.081 1.8E-06 50.8 4.5 33 160-213 2-34 (410)
449 KOG1399 Flavin-containing mono 93.7 0.16 3.4E-06 49.5 6.4 37 158-215 5-41 (448)
450 KOG1238 Glucose dehydrogenase/ 93.7 0.095 2.1E-06 52.3 4.9 38 17-55 55-92 (623)
451 PRK06475 salicylate hydroxylas 93.7 0.12 2.6E-06 49.5 5.6 35 160-215 3-37 (400)
452 PRK05562 precorrin-2 dehydroge 93.7 0.24 5.2E-06 43.5 6.9 52 158-237 24-75 (223)
453 PRK12475 thiamine/molybdopteri 93.6 0.3 6.4E-06 45.9 7.9 36 18-54 23-58 (338)
454 PRK06249 2-dehydropantoate 2-r 93.6 0.12 2.6E-06 47.9 5.3 35 17-53 3-37 (313)
455 cd05294 LDH-like_MDH_nadp A la 93.6 0.26 5.7E-06 45.7 7.5 35 20-54 1-36 (309)
456 TIGR03026 NDP-sugDHase nucleot 93.6 0.16 3.4E-06 49.1 6.2 34 20-55 1-34 (411)
457 PF00899 ThiF: ThiF family; I 93.5 0.077 1.7E-06 42.7 3.3 34 159-212 2-35 (135)
458 PLN02268 probable polyamine ox 93.5 0.092 2E-06 50.9 4.4 21 160-180 1-21 (435)
459 PF07992 Pyr_redox_2: Pyridine 93.5 0.098 2.1E-06 44.6 4.1 32 161-213 1-32 (201)
460 KOG0685 Flavin-containing amin 93.4 0.11 2.5E-06 50.0 4.8 38 158-215 20-57 (498)
461 PRK15116 sulfur acceptor prote 93.4 0.29 6.2E-06 44.3 7.2 36 18-54 29-64 (268)
462 PRK07233 hypothetical protein; 93.4 0.095 2.1E-06 50.4 4.4 33 161-214 1-33 (434)
463 PRK06567 putative bifunctional 93.3 0.1 2.2E-06 55.2 4.5 32 280-313 652-683 (1028)
464 PRK08163 salicylate hydroxylas 93.3 0.13 2.8E-06 49.0 5.1 36 159-215 4-39 (396)
465 KOG3855 Monooxygenase involved 93.3 0.13 2.8E-06 48.8 4.8 36 18-53 35-72 (481)
466 PRK06718 precorrin-2 dehydroge 93.3 0.13 2.8E-06 44.6 4.5 50 158-235 9-58 (202)
467 PRK06184 hypothetical protein; 93.2 0.16 3.4E-06 50.4 5.7 35 160-215 4-38 (502)
468 TIGR01812 sdhA_frdA_Gneg succi 93.2 0.63 1.4E-05 46.9 10.1 28 280-310 141-168 (566)
469 PRK05868 hypothetical protein; 93.2 0.12 2.5E-06 49.2 4.5 35 160-215 2-36 (372)
470 cd01483 E1_enzyme_family Super 93.1 0.49 1.1E-05 38.3 7.6 33 21-54 1-33 (143)
471 PRK09424 pntA NAD(P) transhydr 93.1 0.13 2.8E-06 50.9 4.7 35 18-54 164-198 (509)
472 PRK13984 putative oxidoreducta 92.9 0.19 4.1E-06 51.1 5.9 63 157-240 281-355 (604)
473 PF13738 Pyr_redox_3: Pyridine 92.9 0.12 2.6E-06 44.2 3.8 33 163-215 1-33 (203)
474 PRK10669 putative cation:proto 92.9 0.17 3.7E-06 50.8 5.5 74 19-117 417-491 (558)
475 PRK06753 hypothetical protein; 92.9 0.14 3E-06 48.5 4.5 34 161-215 2-35 (373)
476 COG3349 Uncharacterized conser 92.8 0.14 3E-06 49.9 4.4 36 160-216 1-36 (485)
477 PRK06129 3-hydroxyacyl-CoA deh 92.7 0.16 3.5E-06 47.0 4.7 34 20-55 3-36 (308)
478 PRK12416 protoporphyrinogen ox 92.7 0.13 2.9E-06 50.2 4.3 21 160-180 2-22 (463)
479 PF01593 Amino_oxidase: Flavin 92.7 0.13 2.7E-06 48.9 4.1 31 29-61 1-31 (450)
480 PRK06522 2-dehydropantoate 2-r 92.7 0.16 3.6E-06 46.5 4.7 32 20-53 1-32 (304)
481 TIGR00551 nadB L-aspartate oxi 92.7 1 2.3E-05 44.5 10.6 28 281-311 142-169 (488)
482 cd05292 LDH_2 A subgroup of L- 92.7 0.2 4.2E-06 46.5 5.1 35 20-54 1-35 (308)
483 PF01266 DAO: FAD dependent ox 92.6 0.14 3.1E-06 47.4 4.3 34 280-316 159-192 (358)
484 PRK05562 precorrin-2 dehydroge 92.6 0.23 5E-06 43.7 5.2 34 18-53 24-57 (223)
485 PF02558 ApbA: Ketopantoate re 92.6 0.2 4.4E-06 40.8 4.6 108 22-179 1-114 (151)
486 TIGR00562 proto_IX_ox protopor 92.5 0.16 3.5E-06 49.6 4.6 21 160-180 3-23 (462)
487 PLN02697 lycopene epsilon cycl 92.5 0.81 1.8E-05 45.7 9.6 36 160-216 109-144 (529)
488 PRK06175 L-aspartate oxidase; 92.5 0.72 1.6E-05 44.8 9.1 28 280-310 141-168 (433)
489 PRK07819 3-hydroxybutyryl-CoA 92.5 0.2 4.4E-06 45.9 4.9 35 19-55 5-39 (286)
490 PRK07208 hypothetical protein; 92.4 0.17 3.7E-06 49.7 4.7 34 159-213 4-37 (479)
491 PRK15116 sulfur acceptor prote 92.4 0.19 4E-06 45.6 4.4 35 158-212 29-63 (268)
492 TIGR00518 alaDH alanine dehydr 92.4 0.21 4.5E-06 47.5 5.0 34 18-53 166-199 (370)
493 PRK07588 hypothetical protein; 92.3 0.17 3.8E-06 48.2 4.5 34 161-215 2-35 (391)
494 PRK05708 2-dehydropantoate 2-r 92.3 0.19 4.1E-06 46.5 4.6 33 19-53 2-34 (305)
495 cd05293 LDH_1 A subgroup of L- 92.3 0.27 5.9E-06 45.6 5.6 37 18-54 2-38 (312)
496 cd00757 ThiF_MoeB_HesA_family 92.2 0.6 1.3E-05 41.2 7.5 97 18-117 20-121 (228)
497 TIGR01377 soxA_mon sarcosine o 92.2 0.17 3.6E-06 47.9 4.2 32 161-213 2-33 (380)
498 TIGR02028 ChlP geranylgeranyl 92.2 0.21 4.5E-06 48.0 4.8 34 161-215 2-35 (398)
499 PRK11259 solA N-methyltryptoph 92.2 0.17 3.7E-06 47.8 4.2 32 161-213 5-36 (376)
500 KOG0042 Glycerol-3-phosphate d 92.2 0.079 1.7E-06 51.8 1.9 38 19-58 67-104 (680)
No 1
>PLN02852 ferredoxin-NADP+ reductase
Probab=100.00 E-value=7.5e-46 Score=358.31 Aligned_cols=317 Identities=77% Similarity=1.181 Sum_probs=270.3
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
...++|+||||||||++||..|++..++++|+|||+.+.+||+++|++.|+++..+.+...+.+++...+++|+.+..++
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg 103 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG 103 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC
Confidence 35689999999999999999998743459999999999999999999989998888888888888888899999999999
Q ss_pred eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHH
Q 019876 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176 (334)
Q Consensus 97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~ 176 (334)
.+++++++...||+||||||+..++.++|||.+.+||+++.+|+.+++.++++..+...+..+++|+|||+|++|+|+|+
T Consensus 104 ~dvtl~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar 183 (491)
T PLN02852 104 RDVSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCAR 183 (491)
T ss_pred ccccHHHHhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHH
Confidence 88888888778999999999964578899999999999999999999887766544444457899999999999999999
Q ss_pred HHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccH
Q 019876 177 ILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256 (334)
Q Consensus 177 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~ 256 (334)
.|.+...++..|||++++++.|+..++++|+|++||++...+|+.+|++++++++++.+++++..+..++.+..+...++
T Consensus 184 ~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r 263 (491)
T PLN02852 184 ILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASR 263 (491)
T ss_pred HHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999888765555555566788
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeeecC-CCCcceeecCCceEeC
Q 019876 257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG-GPGKQYAVGTGEFEDL 333 (334)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~ 333 (334)
..+|..++|++.............++|+|+|..+|++|....+++++|++|++..+++..+ ++|+..+++||++++|
T Consensus 264 ~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i 341 (491)
T PLN02852 264 PKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDL 341 (491)
T ss_pred hhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEE
Confidence 9999999998764310000011348999999999999982111137899999999998754 4788888999998775
No 2
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.6e-44 Score=322.32 Aligned_cols=309 Identities=54% Similarity=0.840 Sum_probs=272.5
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 95 (334)
+...++|+|||+||||+++|..|+++.++++|+|+|+.+.++|+.+||++|+++..+.+...|...+++.+..|+.|..+
T Consensus 17 qs~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~v 96 (468)
T KOG1800|consen 17 QSSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKV 96 (468)
T ss_pred ccCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEeccee
Confidence 44556999999999999999999998778999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHH
Q 019876 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (334)
Q Consensus 96 ~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A 175 (334)
+.++++.+++..||+||||+|+..++.+.|||++++||+++++|..||+..|+..++..++. +.+|+|||.|++++|+|
T Consensus 97 G~dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls-~~~vvIvG~GNVAlDvA 175 (468)
T KOG1800|consen 97 GRDVSLKELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLS-GRKVVIVGNGNVALDVA 175 (468)
T ss_pred cccccHHHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccc-cceEEEEccCchhhhhh
Confidence 99999999999999999999998899999999999999999999999999999998888886 99999999999999999
Q ss_pred HHHccCCccc-ccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhc
Q 019876 176 RILLRPTEEL-ATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN 254 (334)
Q Consensus 176 ~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~ 254 (334)
+.|......+ ..|||+.++|+.+++..+++|+|+.||+++...|+.++||+.++.+|++.++.+..|+.-..+..++..
T Consensus 176 RiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~ 255 (468)
T KOG1800|consen 176 RILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQ 255 (468)
T ss_pred hhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccc
Confidence 9999866665 599999999999999999999999999999999999999999999999999999888866666666665
Q ss_pred cHHHHHHHHHHHHHHhccC---CCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeeecCCCCcceeecCCceE
Q 019876 255 SRIQRRVYELLSKAAASAS---SQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFE 331 (334)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~ 331 (334)
.|...|+.+++.+.+.++. .......+-++++|...|.+|. . ..+.|.++.|..+.+.. ++ .++||++.
T Consensus 256 ~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~--~-~~~~v~~~~~~~t~l~~----~~-~~~tg~~e 327 (468)
T KOG1800|consen 256 HRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAIL--P-GADGVSGVRFQVTILEG----TQ-AVPTGAFE 327 (468)
T ss_pred cCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhc--c-CcccccceEEEeeeehh----hc-ccccCceE
Confidence 6777888888777666522 1223345679999999999998 4 24569999999988763 22 56677776
Q ss_pred eC
Q 019876 332 DL 333 (334)
Q Consensus 332 ~~ 333 (334)
+|
T Consensus 328 ~~ 329 (468)
T KOG1800|consen 328 TL 329 (468)
T ss_pred ee
Confidence 65
No 3
>PTZ00188 adrenodoxin reductase; Provisional
Probab=100.00 E-value=1.7e-41 Score=323.22 Aligned_cols=306 Identities=29% Similarity=0.540 Sum_probs=246.5
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 95 (334)
...+++|+||||||||++||.+|++.. +++|+|||+.+.+||+++|++.|+++..+.+...+...+...+++|+.+..+
T Consensus 36 ~~~~krVAIVGaGPAGlyaA~~Ll~~~-g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~V 114 (506)
T PTZ00188 36 EAKPFKVGIIGAGPSALYCCKHLLKHE-RVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHV 114 (506)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhc-CCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEe
Confidence 345789999999999999999876432 4999999999999999999999998888888888888777789999999999
Q ss_pred ceEEecccceeccCeEEEeccCCCCCCCCCC------------Ccc----CCCccchhhHHHHhcCCCCCC---CCCCC-
Q 019876 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIP------------GED----LIGVHSAREFVWWYNGHPDGK---NLSPD- 155 (334)
Q Consensus 96 ~~~v~~~~~~~~yd~lIlATGs~~p~~~~ip------------G~~----~~~v~~~~~~~~~~~~~~~~~---~~~~~- 155 (334)
+.+++.+++...||+||+|||+. + +.+| |++ ..|+|++.+|..||+.++++. .....
T Consensus 115 G~Dvt~eeL~~~YDAVIlAtGA~-~--l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL 191 (506)
T PTZ00188 115 GVDLKMEELRNHYNCVIFCCGAS-E--VSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYL 191 (506)
T ss_pred cCccCHHHHHhcCCEEEEEcCCC-C--CCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCccccccccccc
Confidence 98888888888999999999995 3 3455 655 679999999999999988653 11111
Q ss_pred --CCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCce
Q 019876 156 --LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNL 233 (334)
Q Consensus 156 --~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv 233 (334)
+...++++|||+||+|+|+|+.|++.+++|..|||++++|+.|++.++++|+|+.||++.++.|+.+|++|+++++++
T Consensus 192 ~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~ 271 (506)
T PTZ00188 192 NSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENT 271 (506)
T ss_pred cccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCC
Confidence 225689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCccCCCCCchhhhhccHHHHH----HHHHHHHHHhc-cCCCCCCCceEEEEEeccccceeeccccCCCCeeEEE
Q 019876 234 YVHIREDDLIKSPTDEEEMKNSRIQRR----VYELLSKAAAS-ASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVH 308 (334)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~ 308 (334)
++++++..++............+..+| ..++|++.... .........+.|.|+|..+|++|. + .+++|++|+
T Consensus 272 ~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~--~-~~~~v~~v~ 348 (506)
T PTZ00188 272 KVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIR--P-IDGAMKNVE 348 (506)
T ss_pred eEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEE--C-CCCcEeEEE
Confidence 999998877531110011234666666 55666665420 001101245899999999999999 6 357999999
Q ss_pred EEEeeeecCCCCcceeecCCceEeC
Q 019876 309 FEKTALKGGGPGKQYAVGTGEFEDL 333 (334)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (334)
++.|++.. |+. ++||++.+|
T Consensus 349 ~~~n~l~~---~~~--~~tg~~~~~ 368 (506)
T PTZ00188 349 LELNKNVP---MSF--SSFKENKVL 368 (506)
T ss_pred EEEeeccc---Ccc--CCCCeeEEE
Confidence 99998864 332 667776665
No 4
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=2.8e-31 Score=275.32 Aligned_cols=240 Identities=24% Similarity=0.362 Sum_probs=191.1
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
.+.++|+|||||||||+||.+|++.| ++|+|||+.+.+||+++||+ |.+++++++.++..+.++..|++|++++.++
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G--~~VtVfE~~~~~GG~l~yGI-P~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG 380 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEG--FPVTVFEAFHDLGGVLRYGI-PEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG 380 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCCCCceEEccC-CCCcChHHHHHHHHHHHHhhcCeEEEeEEec
Confidence 45799999999999999999999997 99999999999999999998 8899999999988888999999999999999
Q ss_pred eEEeccccee-ccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCC-CC--CCCCCCCCeEEEEcCCHHHH
Q 019876 97 SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGK-NL--SPDLKSTDTAVILGQGNVAL 172 (334)
Q Consensus 97 ~~v~~~~~~~-~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~-~~--~~~~~~~k~vvVIG~G~~g~ 172 (334)
.+++++++.. .||+||||||++.|+.++|||.+.+||+++.+|+...+...... .. ......+|+|+|||||++|+
T Consensus 381 ~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~ 460 (944)
T PRK12779 381 KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAM 460 (944)
T ss_pred cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHH
Confidence 9999888764 79999999999769999999999999999999987543211000 00 00112689999999999999
Q ss_pred HHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhh
Q 019876 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (334)
Q Consensus 173 e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~ 252 (334)
|+|..+.+ .|+ +||+++|++... ++....
T Consensus 461 D~A~ta~R--------------------~Ga-~Vtlv~rr~~~~----------------------------mpa~~~-- 489 (944)
T PRK12779 461 DAARTAKR--------------------LGG-NVTIVYRRTKSE----------------------------MPARVE-- 489 (944)
T ss_pred HHHHHHHH--------------------cCC-EEEEEEecCccc----------------------------ccccHH--
Confidence 99999986 787 599999986421 111111
Q ss_pred hccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccC-CCCeeEEEEEEeeee-cCCCCcceeecCCce
Q 019876 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER-SGHVSGVHFEKTALK-GGGPGKQYAVGTGEF 330 (334)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~-~~~v~~v~~~~~~~~-~~~~~~~~~~~~~~~ 330 (334)
.+... .++||+|+++..|++|. +++ +++|+++++....+. .|.+|+++++++|+.
T Consensus 490 -----------e~~~a----------~eeGV~~~~~~~p~~i~--~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e 546 (944)
T PRK12779 490 -----------ELHHA----------LEEGINLAVLRAPREFI--GDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEI 546 (944)
T ss_pred -----------HHHHH----------HHCCCEEEeCcceEEEE--ecCCCCEEEEEEEEEEEeccccCcCceeeecCCce
Confidence 11111 14699999999999998 521 247999998877664 466899888888876
Q ss_pred EeC
Q 019876 331 EDL 333 (334)
Q Consensus 331 ~~~ 333 (334)
+.+
T Consensus 547 ~~i 549 (944)
T PRK12779 547 ERV 549 (944)
T ss_pred EEE
Confidence 654
No 5
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.98 E-value=6.3e-31 Score=274.78 Aligned_cols=240 Identities=27% Similarity=0.389 Sum_probs=190.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
+.++|+|||||||||+||.+|++.+ ++|+|||+.+.+||++++++ |.+..++++.....+.+...|++|++++.++.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G--~~VtV~E~~~~~GG~l~~gi-p~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~ 505 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYG--VDVTVYEALHVVGGVLQYGI-PSFRLPRDIIDREVQRLVDIGVKIETNKVIGK 505 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCcceeeccC-CccCCCHHHHHHHHHHHHHCCCEEEeCCccCC
Confidence 5689999999999999999999997 99999999999999999988 77777888888888888999999999988877
Q ss_pred EEecccce--eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCC--CCCCCCCCCCCCCeEEEEcCCHHHHH
Q 019876 98 SVSLSELR--QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHP--DGKNLSPDLKSTDTAVILGQGNVALD 173 (334)
Q Consensus 98 ~v~~~~~~--~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~k~vvVIG~G~~g~e 173 (334)
++++++.. ..||+||||||++.|+.++|||.+.++|++..+|+...+... .+.........+|+|+|||||++|+|
T Consensus 506 ~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D 585 (1006)
T PRK12775 506 TFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMD 585 (1006)
T ss_pred ccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHH
Confidence 77666553 479999999999668999999999999999999987654221 11111122347899999999999999
Q ss_pred HHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhh
Q 019876 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (334)
Q Consensus 174 ~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~ 253 (334)
+|+.+.+ .|+++|++++|+.....+....++
T Consensus 586 ~A~~a~r--------------------lGa~~Vtiv~rr~~~em~a~~~e~----------------------------- 616 (1006)
T PRK12775 586 CLRVAKR--------------------LGAPTVRCVYRRSEAEAPARIEEI----------------------------- 616 (1006)
T ss_pred HHHHHHH--------------------cCCCEEEEEeecCcccCCCCHHHH-----------------------------
Confidence 9998886 788889999988644211111111
Q ss_pred ccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeecCCceEe
Q 019876 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFED 332 (334)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~~~~~~~ 332 (334)
+ .+ .+.||+|++++.|++|. ++++|+|++|++.++.+. .|.+|+++|+++|+.+.
T Consensus 617 ------------~-~a---------~eeGI~~~~~~~p~~i~--~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~ 672 (1006)
T PRK12775 617 ------------R-HA---------KEEGIDFFFLHSPVEIY--VDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKD 672 (1006)
T ss_pred ------------H-HH---------HhCCCEEEecCCcEEEE--eCCCCeEEEEEEEEEEecccCCCCCccccCCCceEE
Confidence 1 11 25699999999999997 434689999999887765 35679988888887654
Q ss_pred C
Q 019876 333 L 333 (334)
Q Consensus 333 ~ 333 (334)
|
T Consensus 673 i 673 (1006)
T PRK12775 673 L 673 (1006)
T ss_pred E
Confidence 3
No 6
>PRK12831 putative oxidoreductase; Provisional
Probab=99.98 E-value=1.2e-30 Score=253.90 Aligned_cols=239 Identities=30% Similarity=0.429 Sum_probs=181.6
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhH-HHHHHHHHhhcCCcEEEeCeE
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKI-VINQFSRVVQHERCSFFGNVT 94 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~-~~~~~~~~~~~~~i~~~~~~~ 94 (334)
..+.++|+||||||||++||.+|++.+ ++|+|||+.+.+||++.|++ |.+..+.+ +..+..+++++.|++++.++.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~~gv~i~~~~~ 213 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMG--YDVTIFEALHEPGGVLVYGI-PEFRLPKETVVKKEIENIKKLGVKIETNVV 213 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCCCCeeeecC-CCccCCccHHHHHHHHHHHHcCCEEEcCCE
Confidence 456799999999999999999999997 99999999988999999987 66655544 777777788889999999998
Q ss_pred EceEEecccce--eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCC-CCCCCCCCCeEEEEcCCHHH
Q 019876 95 LGSSVSLSELR--QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKN-LSPDLKSTDTAVILGQGNVA 171 (334)
Q Consensus 95 v~~~v~~~~~~--~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~k~vvVIG~G~~g 171 (334)
++.+++.++.. ..||+||||||++.|+.+++||.+.++|++..+|+...+....+.. .......+++|+|||+|++|
T Consensus 214 v~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va 293 (464)
T PRK12831 214 VGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVA 293 (464)
T ss_pred ECCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHH
Confidence 87666665542 3699999999995588999999999999999999865432221110 11123478999999999999
Q ss_pred HHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhh
Q 019876 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251 (334)
Q Consensus 172 ~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~ 251 (334)
+|+|..|.+ .|++ ||+++|++... ++....+
T Consensus 294 ~d~A~~l~r--------------------~Ga~-Vtlv~r~~~~~----------------------------m~a~~~e 324 (464)
T PRK12831 294 MDAARTALR--------------------LGAE-VHIVYRRSEEE----------------------------LPARVEE 324 (464)
T ss_pred HHHHHHHHH--------------------cCCE-EEEEeecCccc----------------------------CCCCHHH
Confidence 999999996 7875 99999986421 1111111
Q ss_pred hhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeec-CCc
Q 019876 252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGE 329 (334)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~-~~~ 329 (334)
+.+ + .+.||+|++++.|++|. ++++|++++|++...++. .+.+|++.|+. +|+
T Consensus 325 -------------~~~-a---------~~eGV~i~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~ 379 (464)
T PRK12831 325 -------------VHH-A---------KEEGVIFDLLTNPVEIL--GDENGWVKGMKCIKMELGEPDASGRRRPVEIEGS 379 (464)
T ss_pred -------------HHH-H---------HHcCCEEEecccceEEE--ecCCCeEEEEEEEEEEecCcCCCCCccceecCCc
Confidence 111 1 15699999999999997 434678999999877665 35578877765 454
Q ss_pred eE
Q 019876 330 FE 331 (334)
Q Consensus 330 ~~ 331 (334)
..
T Consensus 380 ~~ 381 (464)
T PRK12831 380 EF 381 (464)
T ss_pred eE
Confidence 43
No 7
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.97 E-value=3.4e-30 Score=250.02 Aligned_cols=238 Identities=27% Similarity=0.398 Sum_probs=180.4
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 95 (334)
+.+.++|+|||+||||++||..|++.+ ++|+|||+.+.+||.+.+++ |.+..++++.....+.+.+.+++++.+..+
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 206 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAG--HSVTVFEALHKPGGVVTYGI-PEFRLPKEIVVTEIKTLKKLGVTFRMNFLV 206 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCcEeeecC-CCccCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence 345689999999999999999999987 99999999999999998887 666666677777777788889999999888
Q ss_pred ceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCC--CCCCCCCCCCCeEEEEcCCHHHHH
Q 019876 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG--KNLSPDLKSTDTAVILGQGNVALD 173 (334)
Q Consensus 96 ~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~k~vvVIG~G~~g~e 173 (334)
+.++++++....||+||||||++.|+.|++||.+.++|++..+++........+ .........+++|+|||+|++|+|
T Consensus 207 ~~~v~~~~~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d 286 (449)
T TIGR01316 207 GKTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVD 286 (449)
T ss_pred CCcCCHHHHHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHH
Confidence 777777665568999999999855888999999999999998887543322111 011112346899999999999999
Q ss_pred HHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhh
Q 019876 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (334)
Q Consensus 174 ~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~ 253 (334)
+|..+.+ .|.+ ||+++|+++...+ ....+
T Consensus 287 ~A~~l~~--------------------~G~~-Vtlv~~~~~~~~~----------------------------~~~~~-- 315 (449)
T TIGR01316 287 SARTALR--------------------LGAE-VHCLYRRTREDMT----------------------------ARVEE-- 315 (449)
T ss_pred HHHHHHH--------------------cCCE-EEEEeecCcccCC----------------------------CCHHH--
Confidence 9999986 6875 9999998643211 11110
Q ss_pred ccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeec-CCce
Q 019876 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEF 330 (334)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~-~~~~ 330 (334)
+ +.+ .++||+|++++.|++|. ++++|++++|.+.+..+. .+++|+++|++ +|+.
T Consensus 316 -----------~-~~l---------~~~GV~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~ 371 (449)
T TIGR01316 316 -----------I-AHA---------EEEGVKFHFLCQPVEII--GDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAE 371 (449)
T ss_pred -----------H-HHH---------HhCCCEEEeccCcEEEE--EcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCce
Confidence 0 111 25699999999999998 523578999999876554 34578776664 4443
No 8
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=1.6e-29 Score=259.50 Aligned_cols=238 Identities=26% Similarity=0.400 Sum_probs=183.9
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
.+.++|+||||||||++||.+|++.+ ++|+|||+.+.+||++.|++ |.+..++++.....+.+.+.|++|+.++.++
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~ 505 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRG--YDVTVFEALHEIGGVLKYGI-PEFRLPKKIVDVEIENLKKLGVKFETDVIVG 505 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeecC-CCCCCCHHHHHHHHHHHHHCCCEEECCCEEC
Confidence 46789999999999999999999997 99999999988999999988 7777777777777778888999999999988
Q ss_pred eEEecccce-eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCC-CCCCCCCCCeEEEEcCCHHHHHH
Q 019876 97 SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKN-LSPDLKSTDTAVILGQGNVALDV 174 (334)
Q Consensus 97 ~~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~k~vvVIG~G~~g~e~ 174 (334)
.++++++.. ..||+||||||++.|+.+++||.+.+||++..+|+...+....+.. .......+++|+|||||++|+|+
T Consensus 506 ~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~ 585 (752)
T PRK12778 506 KTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDS 585 (752)
T ss_pred CcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHH
Confidence 777777654 4699999999996688999999999999999998875442221110 01123468999999999999999
Q ss_pred HHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhc
Q 019876 175 ARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN 254 (334)
Q Consensus 175 A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~ 254 (334)
|..+.+ .|+++||+++|++... ++....+
T Consensus 586 A~~~~r--------------------~Ga~~Vtlv~r~~~~~----------------------------~~~~~~e--- 614 (752)
T PRK12778 586 ARTAKR--------------------LGAERVTIVYRRSEEE----------------------------MPARLEE--- 614 (752)
T ss_pred HHHHHH--------------------cCCCeEEEeeecCccc----------------------------CCCCHHH---
Confidence 999986 7887799999986421 1111111
Q ss_pred cHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeec-CCce
Q 019876 255 SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEF 330 (334)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~-~~~~ 330 (334)
+. .+ .+.||+|++++.|.+|. ++++|++++|++.+..+. .+.+|+++|+. +|+.
T Consensus 615 ----------~~-~~---------~~~GV~i~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~ 670 (752)
T PRK12778 615 ----------VK-HA---------KEEGIEFLTLHNPIEYL--ADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGST 670 (752)
T ss_pred ----------HH-HH---------HHcCCEEEecCcceEEE--ECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCe
Confidence 01 11 25699999999999997 434578999999877654 34567766654 4443
No 9
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=1.8e-28 Score=248.21 Aligned_cols=240 Identities=27% Similarity=0.356 Sum_probs=182.0
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
.+.++|+||||||||++||.+|++.| ++|+|||+.+.+||++.+++ |.+.+.+++.....++++..|++++.++.++
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G--~~V~V~E~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~ 401 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNG--VAVTVYDRHPEIGGLLTFGI-PAFKLDKSLLARRREIFSAMGIEFELNCEVG 401 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceeeecC-CCccCCHHHHHHHHHHHHHCCeEEECCCEeC
Confidence 35789999999999999999999997 99999999999999999988 7777778888777788888999999999887
Q ss_pred eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhc-CCCCCCCC---CCCCCCCCeEEEEcCCHHHH
Q 019876 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN-GHPDGKNL---SPDLKSTDTAVILGQGNVAL 172 (334)
Q Consensus 97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~-~~~~~~~~---~~~~~~~k~vvVIG~G~~g~ 172 (334)
.+++..+....||+||+|||++.+..+++||.+.+|++...+|+.... ........ ......+++|+|||+|++|+
T Consensus 402 ~~i~~~~~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 481 (654)
T PRK12769 402 KDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAM 481 (654)
T ss_pred CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHH
Confidence 666665555689999999999767788999999999998776653211 10000000 00113689999999999999
Q ss_pred HHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhh
Q 019876 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (334)
Q Consensus 173 e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~ 252 (334)
|+|..+.+ .|+++||+++|++....+..+.++
T Consensus 482 d~A~~a~r--------------------~ga~~Vt~i~~~~~~~~~~~~~e~---------------------------- 513 (654)
T PRK12769 482 DCVRTALR--------------------HGASNVTCAYRRDEANMPGSKKEV---------------------------- 513 (654)
T ss_pred HHHHHHHH--------------------cCCCeEEEeEecCCCCCCCCHHHH----------------------------
Confidence 99988775 788889999998754322222111
Q ss_pred hccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeec-CCce
Q 019876 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEF 330 (334)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~-~~~~ 330 (334)
+.+ .++||+|+++..|++|. ++++|++++|++....+. .+++|+++|++ +|+.
T Consensus 514 --------------~~~---------~~~Gv~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~ 568 (654)
T PRK12769 514 --------------KNA---------REEGANFEFNVQPVALE--LNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSE 568 (654)
T ss_pred --------------HHH---------HHcCCeEEeccCcEEEE--ECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCce
Confidence 111 25699999999999997 424689999999876654 35578876665 4554
Q ss_pred Ee
Q 019876 331 ED 332 (334)
Q Consensus 331 ~~ 332 (334)
+.
T Consensus 569 ~~ 570 (654)
T PRK12769 569 FV 570 (654)
T ss_pred EE
Confidence 44
No 10
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=4.1e-28 Score=244.73 Aligned_cols=240 Identities=26% Similarity=0.385 Sum_probs=183.1
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
.+.++|+|||+||+|+++|..|++.| ++|+|||+.+.+||+++|++ |.+...+++.....+++...|++++.++.++
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G--~~Vtv~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~ 384 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAG--VQVDVFDRHPEIGGMLTFGI-PPFKLDKTVLSQRREIFTAMGIDFHLNCEIG 384 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcC--CcEEEEeCCCCCCCeeeccC-CcccCCHHHHHHHHHHHHHCCeEEEcCCccC
Confidence 35799999999999999999999997 89999999999999999998 6666777777777788889999999999887
Q ss_pred eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhc----CCCCCCCCCCCCCCCCeEEEEcCCHHHH
Q 019876 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN----GHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (334)
Q Consensus 97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~k~vvVIG~G~~g~ 172 (334)
.++++.+....||+||+|||+..++.+++||.+.+|++++.+|+.... ...+..........+++|+|||+|++|+
T Consensus 385 ~~~~~~~l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~ 464 (639)
T PRK12809 385 RDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTM 464 (639)
T ss_pred CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHH
Confidence 666666666689999999999767778999999999998877764321 1111000001123689999999999999
Q ss_pred HHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhh
Q 019876 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (334)
Q Consensus 173 e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~ 252 (334)
|+|..+.+ .|+++||+++|++....+....++
T Consensus 465 d~a~~~~~--------------------~Ga~~Vt~v~rr~~~~~~~~~~e~---------------------------- 496 (639)
T PRK12809 465 DCLRTSIR--------------------LNAASVTCAYRRDEVSMPGSRKEV---------------------------- 496 (639)
T ss_pred HHHHHHHH--------------------cCCCeEEEeeecCcccCCCCHHHH----------------------------
Confidence 99988775 688889999998754322221111
Q ss_pred hccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeec-CCce
Q 019876 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEF 330 (334)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~-~~~~ 330 (334)
.. + .++||+|++++.|++|. ++++|+|++|++..+.+. .+++|+++|++ +|+.
T Consensus 497 -------------~~-a---------~~eGv~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~ 551 (639)
T PRK12809 497 -------------VN-A---------REEGVEFQFNVQPQYIA--CDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSE 551 (639)
T ss_pred -------------HH-H---------HHcCCeEEeccCCEEEE--ECCCCeEEEEEEEEEEecCcCCCCCccceecCCce
Confidence 11 1 15699999999999997 534678999998776654 35678877765 4554
Q ss_pred Ee
Q 019876 331 ED 332 (334)
Q Consensus 331 ~~ 332 (334)
+.
T Consensus 552 ~~ 553 (639)
T PRK12809 552 FE 553 (639)
T ss_pred EE
Confidence 43
No 11
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.96 E-value=6.3e-28 Score=235.07 Aligned_cols=234 Identities=29% Similarity=0.411 Sum_probs=176.6
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
.+.++|+|||+||+|+++|.+|++.+ ++|+|||+.+.+||++++++ |.+...+++.....+++.+.|++++.++.++
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G--~~V~i~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~ 215 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAG--VQVVVFDRHPEIGGLLTFGI-PSFKLDKAVLSRRREIFTAMGIEFHLNCEVG 215 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCceeeecC-ccccCCHHHHHHHHHHHHHCCCEEECCCEeC
Confidence 35689999999999999999999987 89999999999999999987 7777777888778888889999999999887
Q ss_pred eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhc----CCCCCCCCCCCCCCCCeEEEEcCCHHHH
Q 019876 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN----GHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (334)
Q Consensus 97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~k~vvVIG~G~~g~ 172 (334)
.++..++....||+||+|||+..+..+++||.+.+||+++.+|+.... ...+..........+++|+|||+|++|+
T Consensus 216 ~~~~~~~~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 295 (467)
T TIGR01318 216 RDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAM 295 (467)
T ss_pred CccCHHHHHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHH
Confidence 665555555589999999999645678999999999998877654211 1111101111113589999999999999
Q ss_pred HHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhh
Q 019876 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (334)
Q Consensus 173 e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~ 252 (334)
|+|..+.+ .|+++|||++|++....+....++
T Consensus 296 d~A~~a~~--------------------~Ga~~Vtvv~r~~~~~~~~~~~e~---------------------------- 327 (467)
T TIGR01318 296 DCVRTAIR--------------------LGAASVTCAYRRDEANMPGSRREV---------------------------- 327 (467)
T ss_pred HHHHHHHH--------------------cCCCeEEEEEecCcccCCCCHHHH----------------------------
Confidence 99998875 687789999998754322211111
Q ss_pred hccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeec
Q 019876 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG 326 (334)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~ 326 (334)
. .+ .++||+|++++.|++|. ++++|++++|++..+.+. .+++|+..|+.
T Consensus 328 -------------~-~~---------~~~GV~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~ 377 (467)
T TIGR01318 328 -------------A-NA---------REEGVEFLFNVQPVYIE--CDEDGRVTGVGLVRTALGEPDADGRRRPVP 377 (467)
T ss_pred -------------H-HH---------HhcCCEEEecCCcEEEE--ECCCCeEEEEEEEEEEecccCCCCCcccee
Confidence 1 11 15699999999999997 423578999998766543 34567766554
No 12
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.96 E-value=9.2e-28 Score=233.82 Aligned_cols=227 Identities=30% Similarity=0.461 Sum_probs=174.7
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 95 (334)
+...++|+||||||||+++|..|++.+ ++|+|||+.+.+||.+.+++ |.+....++..+..+++...+++++.++.+
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g--~~V~lie~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 213 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKG--YDVTIFEARDKAGGLLRYGI-PEFRLPKDIVDREVERLLKLGVEIRTNTEV 213 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCcEeeccC-CCccCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 345789999999999999999999987 99999999999999998877 666666677777778888889999999888
Q ss_pred ceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHH
Q 019876 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (334)
Q Consensus 96 ~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A 175 (334)
+..+++++....||+||||||++.|+.+++||.+.+++++..+++......... ..+..+++|+|||+|++|+|+|
T Consensus 214 ~~~v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~----~~~~~g~~VvViGgG~~g~e~A 289 (457)
T PRK11749 214 GRDITLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVAD----YDLPVGKRVVVIGGGNTAMDAA 289 (457)
T ss_pred CCccCHHHHHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhcccc----ccCCCCCeEEEECCCHHHHHHH
Confidence 766665555578999999999955788899999888999888887655432111 1233689999999999999999
Q ss_pred HHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhcc
Q 019876 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (334)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~ 255 (334)
..|.+ .|+++|++++|++....+....++
T Consensus 290 ~~l~~--------------------~G~~~Vtlv~~~~~~~~~~~~~~~------------------------------- 318 (457)
T PRK11749 290 RTAKR--------------------LGAESVTIVYRRGREEMPASEEEV------------------------------- 318 (457)
T ss_pred HHHHH--------------------cCCCeEEEeeecCcccCCCCHHHH-------------------------------
Confidence 99986 688789999998643211111110
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcce
Q 019876 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQY 323 (334)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~ 323 (334)
+.+ .+.||+|++++.|++|. + +++++++|.+.+..+. .+.+|++.
T Consensus 319 -----------~~~---------~~~GV~i~~~~~v~~i~--~-~~~~~~~v~~~~~~~~~~~~~g~~~ 364 (457)
T PRK11749 319 -----------EHA---------KEEGVEFEWLAAPVEIL--G-DEGRVTGVEFVRMELGEPDASGRRR 364 (457)
T ss_pred -----------HHH---------HHCCCEEEecCCcEEEE--e-cCCceEEEEEEEEEecCcCCCCCcc
Confidence 111 25699999999999998 5 3556788988776544 24466643
No 13
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.95 E-value=6.5e-27 Score=240.09 Aligned_cols=227 Identities=26% Similarity=0.358 Sum_probs=169.6
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
.+.++|+||||||||++||.+|++.| ++|+|||+.+.+||.+++++ |.+..+.++.....+++...|++++.++.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--~~VtV~Ek~~~~GG~lr~~I-P~~Rlp~evL~~die~l~~~GVe~~~gt~V- 612 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAG--HPVTVFEREENAGGVVKNII-PQFRIPAELIQHDIEFVKAHGVKFEFGCSP- 612 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEecccccCcceeeec-ccccccHHHHHHHHHHHHHcCCEEEeCcee-
Confidence 46789999999999999999999997 99999999999999998876 888777777777777888889999999877
Q ss_pred eEEeccccee-ccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHH
Q 019876 97 SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (334)
Q Consensus 97 ~~v~~~~~~~-~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A 175 (334)
++++++... .||+||||||++.+..+++||.+ +++++..+++..++... ..+..+++|+|||||++|+|+|
T Consensus 613 -di~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~------~~~~~GKrVVVIGGGnVAmD~A 684 (1019)
T PRK09853 613 -DLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKG------TALKLGKHVVVVGGGNTAMDAA 684 (1019)
T ss_pred -EEEhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhc------ccccCCCEEEEECCChHHHHHH
Confidence 345555544 59999999999667778899875 67888878876553221 1234689999999999999999
Q ss_pred HHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhcc
Q 019876 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (334)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~ 255 (334)
+.+.+ ..++++|++++|++....+...+++
T Consensus 685 r~a~R-------------------lgGakeVTLVyRr~~~~MPA~~eEl------------------------------- 714 (1019)
T PRK09853 685 RAALR-------------------VPGVEKVTVVYRRTKQEMPAWREEY------------------------------- 714 (1019)
T ss_pred HHHHh-------------------cCCCceEEEEEccCcccccccHHHH-------------------------------
Confidence 98875 1255789999998743212111111
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeecCCceEe
Q 019876 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFED 332 (334)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~~~~~~~ 332 (334)
++.. ++||+|+++..|++|. + +|+++.. ...+. .+.+|+.+++.+++...
T Consensus 715 ----------e~Al----------eeGVe~~~~~~p~~I~--~--dG~l~~~---~~~lg~~d~~Gr~~~v~tg~~~~ 765 (1019)
T PRK09853 715 ----------EEAL----------EDGVEFKELLNPESFD--A--DGTLTCR---VMKLGEPDESGRRRPVETGETVT 765 (1019)
T ss_pred ----------HHHH----------HcCCEEEeCCceEEEE--c--CCcEEEE---EEEeecccCCCceEEeeCCCeEE
Confidence 1111 4589999999999997 5 4654432 22332 24568887777776544
No 14
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.95 E-value=5.7e-27 Score=236.65 Aligned_cols=168 Identities=31% Similarity=0.462 Sum_probs=140.2
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
.+.++|+|||+||||+++|..|++.+ ++|+|||+.+.+||.+++++ |.+..++++.....+.+...|++++.++.++
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G--~~Vtv~e~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~ 267 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKG--HDVTIFDANEQAGGMMRYGI-PRFRLPESVIDADIAPLRAMGAEFRFNTVFG 267 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCceeeecC-CCCCCCHHHHHHHHHHHHHcCCEEEeCCccc
Confidence 35689999999999999999999997 99999999999999999987 7777777777777778888999999998876
Q ss_pred eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHH
Q 019876 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176 (334)
Q Consensus 97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~ 176 (334)
.+++.++....||+||||||++.+..+++||.+.+++++..+++....... ....+++|+|||+|++|+|+|.
T Consensus 268 ~dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~-------~~~~gk~VvVIGgG~~a~e~A~ 340 (652)
T PRK12814 268 RDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGT-------ALHPGKKVVVIGGGNTAIDAAR 340 (652)
T ss_pred CccCHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCC-------cccCCCeEEEECCCHHHHHHHH
Confidence 655555555579999999999645678999999999998877775433211 1347899999999999999999
Q ss_pred HHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876 177 ILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (334)
Q Consensus 177 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~ 214 (334)
.+.+ .|+++||+++|++.
T Consensus 341 ~l~~--------------------~Ga~~Vtlv~r~~~ 358 (652)
T PRK12814 341 TALR--------------------LGAESVTILYRRTR 358 (652)
T ss_pred HHHH--------------------cCCCeEEEeeecCc
Confidence 9886 68888999999875
No 15
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.95 E-value=5.9e-27 Score=237.63 Aligned_cols=160 Identities=21% Similarity=0.288 Sum_probs=123.7
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC----------------------------CCccccccccCCC
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP----------------------------TPFGLVRSGVAPD 67 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~----------------------------~~gg~~~~~~~p~ 67 (334)
+.+.++|+|||+||||++||.+|++.| ++|+|||+.+ .+||+..||+ |
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGI-p- 455 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGI-T- 455 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCC--CeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCc-c-
Confidence 357899999999999999999999987 9999999752 1688999998 4
Q ss_pred CcchhHHHHHHHHHhhc-CCcEEEeCeEEceEEecccce-eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcC
Q 019876 68 HPETKIVINQFSRVVQH-ERCSFFGNVTLGSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG 145 (334)
Q Consensus 68 ~~~~~~~~~~~~~~~~~-~~i~~~~~~~v~~~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~ 145 (334)
+..+++..+.....++. .++.++.++.++.+++.++.. ..||+|+||||++.|+.++|||.+.++|+++.+|+...+.
T Consensus 456 ~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~ 535 (1028)
T PRK06567 456 VRWDKNNLDILRLILERNNNFKYYDGVALDFNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQS 535 (1028)
T ss_pred ccchHHHHHHHHHHHhcCCceEEECCeEECccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhh
Confidence 44556555554444443 357788899998888887754 5799999999997799999999999999999998876533
Q ss_pred CCCC-CCCCCCCCCCCeEEEEcCCHHHHHHHHHHc
Q 019876 146 HPDG-KNLSPDLKSTDTAVILGQGNVALDVARILL 179 (334)
Q Consensus 146 ~~~~-~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~ 179 (334)
.... .....++..+++|||||||++|+|+|+...
T Consensus 536 ~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAl 570 (1028)
T PRK06567 536 GGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESL 570 (1028)
T ss_pred cccccccccCcccCCCCEEEEcCcHHHHHHHHHHH
Confidence 2111 011122335789999999999999998444
No 16
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=229.27 Aligned_cols=248 Identities=28% Similarity=0.413 Sum_probs=195.7
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 95 (334)
..+.++|+||||||||++||..|.+.+ +.|+++|+.+.+||++.||+ |.+.+.+++.+...++++..|++|+.++.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G--~~Vtv~e~~~~~GGll~yGI-P~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v 196 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAG--HDVTVFERVALDGGLLLYGI-PDFKLPKDILDRRLELLERSGVEFKLNVRV 196 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCC--CeEEEeCCcCCCceeEEecC-chhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence 456699999999999999999999998 99999999999999999998 999999999999999999999999999999
Q ss_pred ceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCC--CCCCCCCCCCCeEEEEcCCHHHHH
Q 019876 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG--KNLSPDLKSTDTAVILGQGNVALD 173 (334)
Q Consensus 96 ~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~k~vvVIG~G~~g~e 173 (334)
+.+++.+++...||++++|||+..|+.+++||.+.++|+.+.+|+...+..... .........+|+|+|||+|++++|
T Consensus 197 G~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D 276 (457)
T COG0493 197 GRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMD 276 (457)
T ss_pred CCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHH
Confidence 999999998889999999999988999999999999999999999765422111 101112235699999999999999
Q ss_pred HHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhh
Q 019876 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (334)
Q Consensus 174 ~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~ 253 (334)
++....+ +|+++|+.+++...-. ...+ ...++.
T Consensus 277 ~~~t~~r--------------------~Ga~~v~~~~~~~~~~-~~~~--------------------~~~~~~------ 309 (457)
T COG0493 277 CAGTALR--------------------LGAKSVTCFYREDRDD-ETNE--------------------WPTWAA------ 309 (457)
T ss_pred HHHHHhh--------------------cCCeEEEEeccccccc-cCCc--------------------ccccch------
Confidence 9987775 7999999997543210 0000 000000
Q ss_pred ccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeeec--CCCCcceeec-CCce
Q 019876 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG--GGPGKQYAVG-TGEF 330 (334)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~--~~~~~~~~~~-~~~~ 330 (334)
++..+. ..++|+.+.++..+.+++ ++++|+|+++.+....... +..||+.|++ .|++
T Consensus 310 ---------~~~~~~---------a~eeg~~~~~~~~~~~~~--~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~ 369 (457)
T COG0493 310 ---------QLEVRS---------AGEEGVERLPFVQPKAFI--GNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTE 369 (457)
T ss_pred ---------hhhhhh---------hhhcCCcccccCCceeEe--ecCCCcEeeeecccccccCcccccccccCccccCce
Confidence 011111 247789999999999999 6567999999998876653 3467888887 4666
Q ss_pred EeC
Q 019876 331 EDL 333 (334)
Q Consensus 331 ~~~ 333 (334)
+.+
T Consensus 370 ~~~ 372 (457)
T COG0493 370 KTD 372 (457)
T ss_pred EEe
Confidence 553
No 17
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.95 E-value=1.5e-26 Score=226.38 Aligned_cols=254 Identities=26% Similarity=0.312 Sum_probs=177.9
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
...++|+|||+|++|+++|.+|++.+ ++|+|||+.+.+||++.|++ |.+...+++.....+++++.|++++.++.+.
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g--~~V~v~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~ 217 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAG--HTVTVFEREDRCGGLLMYGI-PNMKLDKAIVDRRIDLLSAEGIDFVTNTEIG 217 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCCCceeeccC-CCccCCHHHHHHHHHHHHhCCCEEECCCEeC
Confidence 34589999999999999999999987 99999999999999999987 7666666677777778888999999998886
Q ss_pred eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCC-CC--CCCCCCCCCCCCeEEEEcCCHHHHH
Q 019876 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGH-PD--GKNLSPDLKSTDTAVILGQGNVALD 173 (334)
Q Consensus 97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~-~~--~~~~~~~~~~~k~vvVIG~G~~g~e 173 (334)
.+++.+.....||+||+|||+..|+.+++||.+.+||++..+++...... .+ ...+......+|+|+|||+|++|+|
T Consensus 218 ~~~~~~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d 297 (485)
T TIGR01317 218 VDISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGAD 297 (485)
T ss_pred CccCHHHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHH
Confidence 55544444468999999999955888999999999999988777543211 11 1011112247899999999999999
Q ss_pred HHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhh
Q 019876 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (334)
Q Consensus 174 ~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~ 253 (334)
+|..+.+ .++++|+++++.+..+...... ..++..
T Consensus 298 ~a~~a~~--------------------~ga~~V~vv~~~~~~~~~~~~~--------------------~~~~~~----- 332 (485)
T TIGR01317 298 CVGTSLR--------------------HGAASVHQFEIMPKPPEARAKD--------------------NPWPEW----- 332 (485)
T ss_pred HHHHHHH--------------------cCCCEEEEEEecCCChhhcccc--------------------cCCCcc-----
Confidence 9877765 6878899998876542111000 000000
Q ss_pred ccHHHHHHHHHHHHHHhccCCCCCCCceEEE-EEeccccceeeccccCCCCeeEEEEEEeeeecCCCCcceeec-CCceE
Q 019876 254 NSRIQRRVYELLSKAAASASSQPMLGQRELH-FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG-TGEFE 331 (334)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~-~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~~~~~ 331 (334)
.... +....+++.. ...||. +++++.|++|. +++++++++|++.+.++..+++|+++|++ .|+.+
T Consensus 333 -~~~~-e~~~a~~e~~---------~~~gv~~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~ 399 (485)
T TIGR01317 333 -PRVY-RVDYAHEEAA---------AHYGRDPREYSILTKEFI--GDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEE 399 (485)
T ss_pred -chhh-hhHHHHHhhh---------hhcCccceEEecCcEEEE--EcCCCeEEEEEEEEEEeccCCCCCccceecCCceE
Confidence 0000 0001111211 134664 46789999998 62247999999988776666789877765 44433
No 18
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.94 E-value=1.1e-25 Score=219.88 Aligned_cols=231 Identities=28% Similarity=0.379 Sum_probs=165.3
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
...++|+|||+||||+++|..|++.+ ++|+|||+.+.+||.+++++ |.+....++.....+++.+.|++++.++.++
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 217 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAG--HKVTVFERADRIGGLLRYGI-PDFKLEKEVIDRRIELMEAEGIEFRTNVEVG 217 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCceeeecC-CcccCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence 35689999999999999999999987 99999999999999999987 6666666777777777888999999998886
Q ss_pred eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCC-CCCCCCCCCCCeEEEEcCCHHHHHHH
Q 019876 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG-KNLSPDLKSTDTAVILGQGNVALDVA 175 (334)
Q Consensus 97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~k~vvVIG~G~~g~e~A 175 (334)
.++...+....||+||+|||+..++.+++||.+.+||++..+|+......... .........+++|+|||+|++|+|+|
T Consensus 218 ~~~~~~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A 297 (471)
T PRK12810 218 KDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV 297 (471)
T ss_pred CcCCHHHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence 55444444458999999999965888899999999999988777543211100 00011123689999999999999999
Q ss_pred HHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhcc
Q 019876 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (334)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~ 255 (334)
..+.+ .|+++|+++.+.......... .. .++. +..
T Consensus 298 ~~~~~--------------------~ga~~Vt~~~~~~~~~~~~~~-----------------~~---~~~~----~~~- 332 (471)
T PRK12810 298 GTAIR--------------------QGAKSVTQRDIMPMPPSRRNK-----------------NN---PWPY----WPM- 332 (471)
T ss_pred HHHHH--------------------cCCCeEEEccccCCCcccccc-----------------cc---CCcc----cch-
Confidence 88775 688789966543321100000 00 0000 000
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeee
Q 019876 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL 314 (334)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~ 314 (334)
....+.+ .+.||+|++++.|++|. + +++++++|++....+
T Consensus 333 -------~~~~~~~---------~~~GV~i~~~~~~~~i~--~-~~g~v~~V~~~~~~~ 372 (471)
T PRK12810 333 -------KLEVSNA---------HEEGVEREFNVQTKEFE--G-ENGKVTGVKVVRTEL 372 (471)
T ss_pred -------HHHHHHH---------HHcCCeEEeccCceEEE--c-cCCEEEEEEEEEEEe
Confidence 0001111 25699999999999998 6 478999999886554
No 19
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.94 E-value=3.9e-25 Score=227.98 Aligned_cols=225 Identities=28% Similarity=0.401 Sum_probs=163.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
+.++|+||||||||++||.+|++.| ++|+|||+.+.+||.+.+++ |.+..+.+...+..+++...|++++.+...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G--~~VTV~Ek~~~lGG~l~~~I-P~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-- 610 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAG--HPVTVFEKKEKPGGVVKNII-PEFRISAESIQKDIELVKFHGVEFKYGCSP-- 610 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CeEEEEecccccCceeeecc-cccCCCHHHHHHHHHHHHhcCcEEEEeccc--
Confidence 4689999999999999999999997 99999999999999998876 777767777776667778889999888532
Q ss_pred EEecccce-eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHH
Q 019876 98 SVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176 (334)
Q Consensus 98 ~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~ 176 (334)
++++.+.. ..||+||||||++.+..++++|.. ++++...+++..+.... .....+++|+|||||++|+|+|+
T Consensus 611 d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~~avefL~~~~~~~------~~~~~GK~VVVIGGGnvAmD~Ar 683 (1012)
T TIGR03315 611 DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVLKSLEFLRAFKEGP------TINPLGKHVVVVGGGNTAMDAAR 683 (1012)
T ss_pred ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-cceeeHHHHHHHhhccc------cccccCCeEEEECCCHHHHHHHH
Confidence 23344443 369999999999667777888864 57887777776554321 11236899999999999999999
Q ss_pred HHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccH
Q 019876 177 ILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256 (334)
Q Consensus 177 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~ 256 (334)
.+.+ ..|+++|++++|++....+...+++
T Consensus 684 ~a~R-------------------l~Ga~kVtLVyRr~~~~Mpa~~eEl-------------------------------- 712 (1012)
T TIGR03315 684 AALR-------------------VPGVEKVTVVYRRTKRYMPASREEL-------------------------------- 712 (1012)
T ss_pred HHHH-------------------hCCCceEEEEEccCccccccCHHHH--------------------------------
Confidence 8875 1377789999998743211111111
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeecCCceEe
Q 019876 257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFED 332 (334)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~~~~~~~ 332 (334)
.+.+ ++||+|+++..|++|. + ++++ +....+. .+.+|+..++.+|+...
T Consensus 713 ---------~~al----------eeGVe~~~~~~p~~I~--~---g~l~---v~~~~l~~~d~sGr~~~v~~Gee~~ 762 (1012)
T TIGR03315 713 ---------EEAL----------EDGVDFKELLSPESFE--D---GTLT---CEVMKLGEPDASGRRRPVGTGETVD 762 (1012)
T ss_pred ---------HHHH----------HcCCEEEeCCceEEEE--C---CeEE---EEEEEeecccCCCceeeecCCCeEE
Confidence 1111 4589999999999987 3 3443 3332333 24568877777777554
No 20
>PRK13984 putative oxidoreductase; Provisional
Probab=99.93 E-value=9e-25 Score=219.74 Aligned_cols=236 Identities=24% Similarity=0.298 Sum_probs=169.5
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
.+.++|+|||+|+||+++|..|++.+ ++|+|||+.+.+||.+.+++ |.+..++++.....++++..|++++.++.++
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G--~~v~vie~~~~~gG~~~~~i-~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 357 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMG--YEVTVYESLSKPGGVMRYGI-PSYRLPDEALDKDIAFIEALGVKIHLNTRVG 357 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceEeecC-CcccCCHHHHHHHHHHHHHCCcEEECCCEeC
Confidence 46789999999999999999999997 99999999999999998887 6666666777776778888999999998886
Q ss_pred eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHH
Q 019876 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176 (334)
Q Consensus 97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~ 176 (334)
.++..+.....||+||+|||+..|+.+++||.+.+++++..+++......... .......+++|+|||||++|+|+|.
T Consensus 358 ~~~~~~~~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~--~~~~~~~~k~VvVIGGG~~g~e~A~ 435 (604)
T PRK13984 358 KDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRG--EGPKPKIPRSLVVIGGGNVAMDIAR 435 (604)
T ss_pred CcCCHHHHHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhcc--CCCcCCCCCcEEEECCchHHHHHHH
Confidence 65555555568999999999965788999999889999888877644322110 0001124799999999999999999
Q ss_pred HHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccH
Q 019876 177 ILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256 (334)
Q Consensus 177 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~ 256 (334)
.|++.... ..+..+|+++..+... ..++....+
T Consensus 436 ~l~r~~~~---------------~~g~~~V~v~~~~r~~---------------------------~~~~~~~~e----- 468 (604)
T PRK13984 436 SMARLQKM---------------EYGEVNVKVTSLERTF---------------------------EEMPADMEE----- 468 (604)
T ss_pred HHHhcccc---------------ccCceEEEEeccccCc---------------------------ccCCCCHHH-----
Confidence 99861100 0134568887432111 001111111
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeeecCCCCcceee
Q 019876 257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAV 325 (334)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~ 325 (334)
+.+. .+.||+|+++..|++|. + +++++++|++.+.....+.+|+..+.
T Consensus 469 --------~~~~----------~~~GV~i~~~~~~~~i~--~-~~g~v~~v~~~~~~~~~~~~G~~~~~ 516 (604)
T PRK13984 469 --------IEEG----------LEEGVVIYPGWGPMEVV--I-ENDKVKGVKFKKCVEVFDEEGRFNPK 516 (604)
T ss_pred --------HHHH----------HHcCCEEEeCCCCEEEE--c-cCCEEEEEEEEEEeeccCCCCCccce
Confidence 1111 14599999999999997 5 47899999987653333455765443
No 21
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.93 E-value=3.4e-24 Score=202.06 Aligned_cols=222 Identities=28% Similarity=0.392 Sum_probs=151.5
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 95 (334)
+..+++|+|||+|++|+++|..|++.+ .+|++||+.+.+||.+.++. +.+....+......+.+.+.+++++.++.+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v 91 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLG--YEVHVYDKLPEPGGLMLFGI-PEFRIPIERVREGVKELEEAGVVFHTRTKV 91 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCceeeecC-cccccCHHHHHHHHHHHHhCCeEEecCcEE
Confidence 345689999999999999999999987 99999999999998876654 322222222333333445558999888766
Q ss_pred ceE---------------EecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCC-CCCC-CCCCC
Q 019876 96 GSS---------------VSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG-KNLS-PDLKS 158 (334)
Q Consensus 96 ~~~---------------v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~-~~~~-~~~~~ 158 (334)
... +..++....||+||||||++.|+.|++||.+.+++++..++...+...... .... .....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
T PRK12770 92 CCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVE 171 (352)
T ss_pred eeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccccccccccccccC
Confidence 211 111122357999999999944778899998888998877665543322111 0000 00124
Q ss_pred CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEc
Q 019876 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (334)
Q Consensus 159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~ 238 (334)
+++|+|||+|++|+|+|..|.. .+.++|+++.|++....+....
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~--------------------~g~~~Vtvi~~~~~~~~~~~~~---------------- 215 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVL--------------------LGAEKVYLAYRRTINEAPAGKY---------------- 215 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--------------------cCCCeEEEEeecchhhCCCCHH----------------
Confidence 7899999999999999999875 5776799999876432111100
Q ss_pred cCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee
Q 019876 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK 315 (334)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~ 315 (334)
.+ +.+ ..+||++++++++++|. + +++++.|++....+.
T Consensus 216 -------------------------~~-~~l---------~~~gi~i~~~~~v~~i~--~--~~~~~~v~~~~~~~~ 253 (352)
T PRK12770 216 -------------------------EI-ERL---------IARGVEFLELVTPVRII--G--EGRVEGVELAKMRLG 253 (352)
T ss_pred -------------------------HH-HHH---------HHcCCEEeeccCceeee--c--CCcEeEEEEEEEEec
Confidence 01 111 25689999999999998 6 467888888765543
No 22
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.92 E-value=1.8e-23 Score=208.53 Aligned_cols=232 Identities=25% Similarity=0.342 Sum_probs=172.4
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 95 (334)
....++|+|||+||+|+++|..|++.| ++|+|||+.+.+||++++++ |.+..++++.....+.+.+.|++++.+..+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~ 210 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAGPKLGGMMRYGI-PAYRLPREVLDAEIQRILDLGVEVRLGVRV 210 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeecC-CCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 346789999999999999999999997 89999999999999999987 777777777776667777899999988877
Q ss_pred ceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHH
Q 019876 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (334)
Q Consensus 96 ~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A 175 (334)
+.++........||+||+|||+..+..+.++|.+..|++....++....... ....+++|+|||+|++|+|++
T Consensus 211 ~~~~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~-------~~~~gk~v~ViGgg~~a~d~a 283 (564)
T PRK12771 211 GEDITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGE-------PPFLGKRVVVIGGGNTAMDAA 283 (564)
T ss_pred CCcCCHHHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccC-------CcCCCCCEEEECChHHHHHHH
Confidence 4444343334479999999999656677899988888888777765332211 123689999999999999999
Q ss_pred HHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhcc
Q 019876 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (334)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~ 255 (334)
..+.+ .++++|++++|++....+....+
T Consensus 284 ~~a~~--------------------lga~~v~ii~r~~~~~~~~~~~~-------------------------------- 311 (564)
T PRK12771 284 RTARR--------------------LGAEEVTIVYRRTREDMPAHDEE-------------------------------- 311 (564)
T ss_pred HHHHH--------------------cCCCEEEEEEecCcccCCCCHHH--------------------------------
Confidence 98775 67778999999864321111111
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeecCCceEe
Q 019876 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFED 332 (334)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~~~~~~~ 332 (334)
+.+. .+.||+|++++.|++|. + +++++.+|++...++. .+.+|++.|+ +|+.+.
T Consensus 312 ---------~~~a----------~~~GVki~~~~~~~~i~--~-~~~~~~~v~~~~~~~~~~~~~g~~~~~-~g~~~~ 366 (564)
T PRK12771 312 ---------IEEA----------LREGVEINWLRTPVEIE--G-DENGATGLRVITVEKMELDEDGRPSPV-TGEEET 366 (564)
T ss_pred ---------HHHH----------HHcCCEEEecCCcEEEE--c-CCCCEEEEEEEEEEecccCCCCCeeec-CCceEE
Confidence 1111 14689999999999998 5 3445558887765543 3557887776 555444
No 23
>PRK06370 mercuric reductase; Validated
Probab=99.90 E-value=1.6e-22 Score=197.34 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=121.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCc---------------------------c
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP---------------------------E 70 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~---------------------------~ 70 (334)
..++|+|||+||||++||..|++.| .+|+|||+....|++++.||.|.+. .
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLG--MKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVD 81 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccC
Confidence 4589999999999999999999997 9999999975555556667766421 1
Q ss_pred hhHHH-----------HHHHHHhhcC-CcEEEeCeEE---ceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccc
Q 019876 71 TKIVI-----------NQFSRVVQHE-RCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (334)
Q Consensus 71 ~~~~~-----------~~~~~~~~~~-~i~~~~~~~v---~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~ 135 (334)
...+. ..+..++++. +++++.++.+ .+.+.+++..+.||+||||||+ .|+.|++||.+..++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs-~p~~p~i~G~~~~~~~~ 160 (463)
T PRK06370 82 FKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGA-RAAIPPIPGLDEVGYLT 160 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCC-CCCCCCCCCCCcCceEc
Confidence 11111 2233455665 8999887653 2344454445789999999999 59999999987767766
Q ss_pred hhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
..++.. . ...+++|+|||+|++|+|+|..|++ .|. +|+++++.+.+
T Consensus 161 ~~~~~~----~---------~~~~~~vvVIGgG~~g~E~A~~l~~--------------------~G~-~Vtli~~~~~~ 206 (463)
T PRK06370 161 NETIFS----L---------DELPEHLVIIGGGYIGLEFAQMFRR--------------------FGS-EVTVIERGPRL 206 (463)
T ss_pred chHhhC----c---------cccCCEEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEEcCCCC
Confidence 544331 1 0146899999999999999999986 565 69999999877
Q ss_pred ccCC
Q 019876 216 QAAC 219 (334)
Q Consensus 216 ~~~~ 219 (334)
+..+
T Consensus 207 l~~~ 210 (463)
T PRK06370 207 LPRE 210 (463)
T ss_pred Cccc
Confidence 5443
No 24
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.6e-22 Score=185.39 Aligned_cols=200 Identities=25% Similarity=0.329 Sum_probs=144.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCe-EEEEcCCCCCcccccc----ccCCCCc---chhHHHHHHHHHhhcCCcEE
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRS----GVAPDHP---ETKIVINQFSRVVQHERCSF 89 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~-v~vie~~~~~gg~~~~----~~~p~~~---~~~~~~~~~~~~~~~~~i~~ 89 (334)
..++|+|||||||||+||.++.+.+ .+ ++|+++ ..+||.+.. .-+|+++ ...++...+.++....++++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~--l~~~li~~~-~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~ 78 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAG--LKVVLILEG-GEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEI 78 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcC--CCcEEEEec-CCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEE
Confidence 4579999999999999999999997 88 555555 456655432 1124443 34578888999988899988
Q ss_pred EeCeEEc-------eEEecccceeccCeEEEeccCCCCCCCCCCCcc---CCCccchhhHHHHhcCCCCCCCCCCCCCCC
Q 019876 90 FGNVTLG-------SSVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKST 159 (334)
Q Consensus 90 ~~~~~v~-------~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
....... ..+.+++..+.+++||||||+ .++.|.+||.. ..+|+++ ..||. ++++
T Consensus 79 ~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~-~~~~~~~~~e~e~~g~gv~yc--------~~cdg------~~~~ 143 (305)
T COG0492 79 VEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGA-GARKLGVPGEEEFEGKGVSYC--------ATCDG------FFKG 143 (305)
T ss_pred EEEEEEEEeecCceEEEEECCCeEEEeEEEECcCC-cccCCCCCcchhhcCCceEEe--------eecCc------cccC
Confidence 7643321 134455566789999999999 58888888754 2344443 23332 4588
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEcc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE 239 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~ 239 (334)
|+|+|||||++|+|.|.+|++ -+++||+++|++.+.+ .
T Consensus 144 k~v~ViGgG~sAve~Al~L~~---------------------~a~~Vtlv~r~~~~ra---~------------------ 181 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSK---------------------IAKKVTLVHRRDEFRA---E------------------ 181 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHH---------------------hcCeEEEEecCcccCc---C------------------
Confidence 999999999999999999996 5567999999987631 0
Q ss_pred CccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEee
Q 019876 240 DDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313 (334)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~ 313 (334)
+.+++.+. ...+|++++++.+++|. | ++ +++|+++++.
T Consensus 182 -----------------------~~~~~~l~--------~~~~i~~~~~~~i~ei~--G--~~-v~~v~l~~~~ 219 (305)
T COG0492 182 -----------------------EILVERLK--------KNVKIEVLTNTVVKEIL--G--DD-VEGVVLKNVK 219 (305)
T ss_pred -----------------------HHHHHHHH--------hcCCeEEEeCCceeEEe--c--Cc-cceEEEEecC
Confidence 12223322 13379999999999999 7 45 9999998753
No 25
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.90 E-value=3.2e-22 Score=194.45 Aligned_cols=163 Identities=18% Similarity=0.245 Sum_probs=115.7
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc-cccccCCCCcc---------------------------
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPE--------------------------- 70 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~-~~~~~~p~~~~--------------------------- 70 (334)
.++|+||||||||++||..+++.| .+|+|||+.. +||. ++.||.|.+.+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHG--AKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN 78 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence 579999999999999999999997 9999999964 6664 45577776411
Q ss_pred hhH-----------HHHHHHHHhhcCCcEEEeCeEE---ceEEecccceeccCeEEEeccCCCCCCC-CCCCccCCCccc
Q 019876 71 TKI-----------VINQFSRVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRAL-GIPGEDLIGVHS 135 (334)
Q Consensus 71 ~~~-----------~~~~~~~~~~~~~i~~~~~~~v---~~~v~~~~~~~~yd~lIlATGs~~p~~~-~ipG~~~~~v~~ 135 (334)
... +...+...++..+++++.++.. ...+.++...+.||+||||||+ .|+.| ++||.+. ..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs-~p~~p~~i~g~~~--~~~ 155 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGG-KPSFPENIPGAEL--GTD 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCC-CCCCCCCCCCCce--eEc
Confidence 111 1112334556678999887653 2234444345789999999999 58888 8898652 122
Q ss_pred hhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
..++. ... ..+++++|||||++|+|+|..|++ .|. +||+++|++.+
T Consensus 156 ~~~~~----~~~---------~~~~~vvIIGgG~iG~E~A~~l~~--------------------~g~-~Vtli~~~~~i 201 (450)
T TIGR01421 156 SDGFF----ALE---------ELPKRVVIVGAGYIAVELAGVLHG--------------------LGS-ETHLVIRHERV 201 (450)
T ss_pred HHHhh----Ccc---------ccCCeEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEecCCCC
Confidence 22221 110 136899999999999999999986 565 69999999887
Q ss_pred ccCCCH
Q 019876 216 QAACTA 221 (334)
Q Consensus 216 ~~~~~~ 221 (334)
+..+++
T Consensus 202 l~~~d~ 207 (450)
T TIGR01421 202 LRSFDS 207 (450)
T ss_pred CcccCH
Confidence 755543
No 26
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.90 E-value=5.1e-22 Score=192.57 Aligned_cols=164 Identities=18% Similarity=0.229 Sum_probs=119.7
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC-Cccc-cccccCCCCcc---------hhHHH-----------H
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGL-VRSGVAPDHPE---------TKIVI-----------N 76 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~-~gg~-~~~~~~p~~~~---------~~~~~-----------~ 76 (334)
.++|+||||||||++||..|++.+ .+|+|||+.+. +||. ++.+|.|.+.. ..++. .
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g--~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAG--KKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRG 80 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCC--CEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999987 99999999864 4765 45677786642 12221 1
Q ss_pred HHHHHhhcCCcEEEeCeEE---ceEEecc--c--ceeccCeEEEeccCCCCCCCCCCCcc-CCCccchhhHHHHhcCCCC
Q 019876 77 QFSRVVQHERCSFFGNVTL---GSSVSLS--E--LRQLYHVVVLAYGAESDRALGIPGED-LIGVHSAREFVWWYNGHPD 148 (334)
Q Consensus 77 ~~~~~~~~~~i~~~~~~~v---~~~v~~~--~--~~~~yd~lIlATGs~~p~~~~ipG~~-~~~v~~~~~~~~~~~~~~~ 148 (334)
...+.+.+.+++++.+... .+.+.+. + ..+.||+||||||+ .|+.|++||.+ .++++++.++.. .
T Consensus 81 ~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs-~~~~p~i~G~~~~~~v~~~~~~~~----~-- 153 (438)
T PRK07251 81 KNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGA-VSNVLPIPGLADSKHVYDSTGIQS----L-- 153 (438)
T ss_pred HHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCC-CCCCCCCCCcCCCCcEEchHHHhc----c--
Confidence 1234566778998876542 2233332 1 24689999999999 58889999974 566776654432 1
Q ss_pred CCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCC
Q 019876 149 GKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAAC 219 (334)
Q Consensus 149 ~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~ 219 (334)
...+++|+|||+|++|+|+|..|++ .|. +|++++|.+.++..+
T Consensus 154 -------~~~~~~vvIIGgG~~g~e~A~~l~~--------------------~g~-~Vtli~~~~~~l~~~ 196 (438)
T PRK07251 154 -------ETLPERLGIIGGGNIGLEFAGLYNK--------------------LGS-KVTVLDAASTILPRE 196 (438)
T ss_pred -------hhcCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEecCCccCCCC
Confidence 1146899999999999999999986 565 699999998776544
No 27
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.89 E-value=3.6e-22 Score=191.68 Aligned_cols=167 Identities=17% Similarity=0.289 Sum_probs=124.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc-ccccccCCCCcchhH-----------------------
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHPETKI----------------------- 73 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg-~~~~~~~p~~~~~~~----------------------- 73 (334)
..++++|||+||||..||..+++.+ .++.++|+.+..|| |+++||.|.+.+...
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G--~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~i 80 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLG--LKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI 80 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCc
Confidence 4689999999999999999999998 66999999965555 556688887543220
Q ss_pred ----HH-----------HHHHHHhhcCCcEEEeCeEE---ceEEeccc---ceeccCeEEEeccCCCCCCCCCCCccCCC
Q 019876 74 ----VI-----------NQFSRVVQHERCSFFGNVTL---GSSVSLSE---LRQLYHVVVLAYGAESDRALGIPGEDLIG 132 (334)
Q Consensus 74 ----~~-----------~~~~~~~~~~~i~~~~~~~v---~~~v~~~~---~~~~yd~lIlATGs~~p~~~~ipG~~~~~ 132 (334)
+. .....+++..+|+++.+... ..++.+.. ....++++|||||| +|+.|+++|.+...
T Consensus 81 d~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS-~p~~~~~~~~~~~~ 159 (454)
T COG1249 81 DFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGS-RPRIPPGPGIDGAR 159 (454)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCC-CCcCCCCCCCCCCe
Confidence 11 11233445557887766542 23455544 45689999999999 69999999988766
Q ss_pred ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (334)
Q Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~ 212 (334)
+++..+.+.. ..-+++++|||||.+|+|+|..+++ +|++ |||++|+
T Consensus 160 ~~~s~~~l~~-------------~~lP~~lvIiGgG~IGlE~a~~~~~--------------------LG~~-VTiie~~ 205 (454)
T COG1249 160 ILDSSDALFL-------------LELPKSLVIVGGGYIGLEFASVFAA--------------------LGSK-VTVVERG 205 (454)
T ss_pred EEechhhccc-------------ccCCCEEEEECCCHHHHHHHHHHHH--------------------cCCc-EEEEecC
Confidence 7666543321 1257999999999999999999997 8985 9999999
Q ss_pred CccccCCCH
Q 019876 213 GPVQAACTA 221 (334)
Q Consensus 213 ~~~~~~~~~ 221 (334)
+++++.+++
T Consensus 206 ~~iLp~~D~ 214 (454)
T COG1249 206 DRILPGEDP 214 (454)
T ss_pred CCCCCcCCH
Confidence 999866554
No 28
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.89 E-value=9.2e-22 Score=192.11 Aligned_cols=164 Identities=19% Similarity=0.256 Sum_probs=118.5
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcch-------------------------h--
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET-------------------------K-- 72 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~-------------------------~-- 72 (334)
++|+||||||||++||..+++.+ .+|+|||+.+..|.++++||.|.+.+. .
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g--~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELG--ASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGEL 78 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHH
Confidence 48999999999999999999997 999999998644445566776743211 0
Q ss_pred -----HHHHH-----HHHHhhcCCcEEEeCeEE---ceEEecccc--eeccCeEEEeccCCCCCCCCCCCccCCCccchh
Q 019876 73 -----IVINQ-----FSRVVQHERCSFFGNVTL---GSSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137 (334)
Q Consensus 73 -----~~~~~-----~~~~~~~~~i~~~~~~~v---~~~v~~~~~--~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~ 137 (334)
++... +..++++.+++++.+... ...+.+.++ ...||+||||||+ .|+.|++||.+..++++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs-~p~~p~i~G~~~~~~~~~~ 157 (463)
T TIGR02053 79 LEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGA-RPAIPPIPGLKEAGYLTSE 157 (463)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCC-CCCCCCCCCcccCceECch
Confidence 11111 234566778998877653 234555442 3589999999999 5899999998766666554
Q ss_pred hHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc
Q 019876 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (334)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~ 217 (334)
+++. . -..+++++|||+|.+|+|+|..|++ .|. +||++++.+.++.
T Consensus 158 ~~~~----~---------~~~~~~vvIIGgG~~g~E~A~~l~~--------------------~g~-~Vtli~~~~~~l~ 203 (463)
T TIGR02053 158 EALA----L---------DRIPESLAVIGGGAIGVELAQAFAR--------------------LGS-EVTILQRSDRLLP 203 (463)
T ss_pred hhhC----c---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEEcCCcCCC
Confidence 4321 0 0135899999999999999999986 565 6999999987765
Q ss_pred CCC
Q 019876 218 ACT 220 (334)
Q Consensus 218 ~~~ 220 (334)
.++
T Consensus 204 ~~d 206 (463)
T TIGR02053 204 REE 206 (463)
T ss_pred ccC
Confidence 443
No 29
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.89 E-value=3.7e-22 Score=199.04 Aligned_cols=163 Identities=31% Similarity=0.457 Sum_probs=140.6
Q ss_pred cccCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEe
Q 019876 12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFG 91 (334)
Q Consensus 12 ~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (334)
..+...+.++|+|||+||||++||..|-+.| ..|+|+|+.+.+||++.||+ |...+.+.+.++-.+++...||+|.+
T Consensus 1778 ~pp~~rtg~~vaiigsgpaglaaadqlnk~g--h~v~vyer~dr~ggll~ygi-pnmkldk~vv~rrv~ll~~egi~f~t 1854 (2142)
T KOG0399|consen 1778 CPPAFRTGKRVAIIGSGPAGLAAADQLNKAG--HTVTVYERSDRVGGLLMYGI-PNMKLDKFVVQRRVDLLEQEGIRFVT 1854 (2142)
T ss_pred CCcccccCcEEEEEccCchhhhHHHHHhhcC--cEEEEEEecCCcCceeeecC-CccchhHHHHHHHHHHHHhhCceEEe
Confidence 4555567899999999999999999999997 99999999999999999999 88878888888888999999999999
Q ss_pred CeEEceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhc-----CCCCCCCCCCCCCCCCeEEEEc
Q 019876 92 NVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN-----GHPDGKNLSPDLKSTDTAVILG 166 (334)
Q Consensus 92 ~~~v~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~k~vvVIG 166 (334)
|+.+++++.++.+..++|++|+|+||..|+.+|+||.+.+||+.+.+|+..-. ...|... .-.++|+|+|||
T Consensus 1855 n~eigk~vs~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~---~~~~gkkvivig 1931 (2142)
T KOG0399|consen 1855 NTEIGKHVSLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNY---ISAKGKKVIVIG 1931 (2142)
T ss_pred eccccccccHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccce---eccCCCeEEEEC
Confidence 99999999998888899999999999889999999999999998888875421 1111111 113799999999
Q ss_pred CCHHHHHHHHHHcc
Q 019876 167 QGNVALDVARILLR 180 (334)
Q Consensus 167 ~G~~g~e~A~~L~~ 180 (334)
||.+|-|+...-.+
T Consensus 1932 ggdtg~dcigtsvr 1945 (2142)
T KOG0399|consen 1932 GGDTGTDCIGTSVR 1945 (2142)
T ss_pred CCCccccccccchh
Confidence 99999999876665
No 30
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.88 E-value=1.8e-21 Score=190.02 Aligned_cols=168 Identities=18% Similarity=0.181 Sum_probs=120.7
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc-cccCCCCcch------------------------
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDHPET------------------------ 71 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~-~~~~p~~~~~------------------------ 71 (334)
+..++|+||||||||++||.+|.+.+ .+|+|||+.+.+||.+. .++.|.+...
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G--~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLG--KRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRI 80 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCC--CEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCcc
Confidence 34589999999999999999999997 99999999777777664 4666643211
Q ss_pred --hHHH-----------HHHHHHhhcCCcEEEeCeEE--c-e--EEecccc---eeccCeEEEeccCCCCCCCCCCCccC
Q 019876 72 --KIVI-----------NQFSRVVQHERCSFFGNVTL--G-S--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDL 130 (334)
Q Consensus 72 --~~~~-----------~~~~~~~~~~~i~~~~~~~v--~-~--~v~~~~~---~~~yd~lIlATGs~~p~~~~ipG~~~ 130 (334)
.++. ..+..++.+.+++++.+... + . .+...++ .+.||+||||||+ .|..|++++.+.
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs-~p~~p~~~~~~~ 159 (461)
T PRK05249 81 TFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGS-RPYRPPDVDFDH 159 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCC-CCCCCCCCCCCC
Confidence 1111 12234456678888877542 1 1 2322232 4689999999999 588888887766
Q ss_pred CCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEe
Q 019876 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (334)
Q Consensus 131 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~ 210 (334)
+++++..++... ...+++++|||+|++|+|+|..|++ .|. +||+++
T Consensus 160 ~~v~~~~~~~~~-------------~~~~~~v~IiGgG~~g~E~A~~l~~--------------------~g~-~Vtli~ 205 (461)
T PRK05249 160 PRIYDSDSILSL-------------DHLPRSLIIYGAGVIGCEYASIFAA--------------------LGV-KVTLIN 205 (461)
T ss_pred CeEEcHHHhhch-------------hhcCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEe
Confidence 677766544321 0146899999999999999999996 565 699999
Q ss_pred ecCccccCCCH
Q 019876 211 RRGPVQAACTA 221 (334)
Q Consensus 211 r~~~~~~~~~~ 221 (334)
+++.++..+++
T Consensus 206 ~~~~~l~~~d~ 216 (461)
T PRK05249 206 TRDRLLSFLDD 216 (461)
T ss_pred cCCCcCCcCCH
Confidence 99887655443
No 31
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.88 E-value=1.5e-21 Score=189.68 Aligned_cols=169 Identities=14% Similarity=0.173 Sum_probs=115.5
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc----cccccccCCC-CcchhHHHHHHHHHhhcCCcEEEeCeE
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF----GLVRSGVAPD-HPETKIVINQFSRVVQHERCSFFGNVT 94 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g----g~~~~~~~p~-~~~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (334)
|+|||||||+||++||..|++.+++.+|+|||+++..+ +...+ . ++ +....++..+..+.+++.+++++.+..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 78 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYF-V-GGFFDDPNTMIARTPEEFIKSGIDVKTEHE 78 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceE-e-ccccCCHHHhhcCCHHHHHHCCCeEEecCE
Confidence 58999999999999999999987778999999987642 11111 1 11 122333444445566777999887654
Q ss_pred Ec------eEEeccc----ceec--cCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeE
Q 019876 95 LG------SSVSLSE----LRQL--YHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (334)
Q Consensus 95 v~------~~v~~~~----~~~~--yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~v 162 (334)
+. ..+.+.+ .... ||+||||||+ .|..|++||.+.+++++...+..... ..+. + . -..+++|
T Consensus 79 V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~-~~~~~~i~g~~~~~v~~~~~~~~~~~-l~~~--l-~-~~~~~~v 152 (444)
T PRK09564 79 VVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA-RPIIPPIKNINLENVYTLKSMEDGLA-LKEL--L-K-DEEIKNI 152 (444)
T ss_pred EEEEECCCCEEEEEECCCCCEEEecCCEEEECCCC-CCCCCCCCCcCCCCEEEECCHHHHHH-HHHH--H-h-hcCCCEE
Confidence 42 2333322 2334 9999999999 58888999987777876554432111 0000 0 0 0146899
Q ss_pred EEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc
Q 019876 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (334)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~ 217 (334)
+|||+|++|+|+|..|.+ .|. +|+++.+.+.++.
T Consensus 153 vVvGgG~~g~e~A~~l~~--------------------~g~-~Vtli~~~~~~l~ 186 (444)
T PRK09564 153 VIIGAGFIGLEAVEAAKH--------------------LGK-NVRIIQLEDRILP 186 (444)
T ss_pred EEECCCHHHHHHHHHHHh--------------------cCC-cEEEEeCCcccCc
Confidence 999999999999999885 564 6999999887653
No 32
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.88 E-value=3.6e-21 Score=186.83 Aligned_cols=165 Identities=18% Similarity=0.167 Sum_probs=116.7
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC-Ccccc-ccccCCCCcchh----------------HHHHHH--
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGLV-RSGVAPDHPETK----------------IVINQF-- 78 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~-~gg~~-~~~~~p~~~~~~----------------~~~~~~-- 78 (334)
.++|+||||||||++||.+|++.+ .+|+|||+.+. .||.+ +.+|.|.+.+.. .+..++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g--~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAG--WRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRN 80 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCC--CeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999987 99999999754 57765 457777643211 111111
Q ss_pred ---HHHhhcCCcEEEeCeEE--c---eEEecccc--eeccCeEEEeccCCCCCCCCCCCcc-CCCccchhhHHHHhcCCC
Q 019876 79 ---SRVVQHERCSFFGNVTL--G---SSVSLSEL--RQLYHVVVLAYGAESDRALGIPGED-LIGVHSAREFVWWYNGHP 147 (334)
Q Consensus 79 ---~~~~~~~~i~~~~~~~v--~---~~v~~~~~--~~~yd~lIlATGs~~p~~~~ipG~~-~~~v~~~~~~~~~~~~~~ 147 (334)
.++.+..+++++.+... + ..+...++ .+.||+||||||+ .|..|++||.+ .++++++.++.. .
T Consensus 81 ~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs-~p~~p~i~G~~~~~~v~~~~~~~~----~- 154 (441)
T PRK08010 81 KNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGA-QTVVPPIPGITTTPGVYDSTGLLN----L- 154 (441)
T ss_pred hHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCC-cCCCCCCCCccCCCCEEChhHhhc----c-
Confidence 12233348888766532 1 12333333 4689999999999 58889999975 467776544331 1
Q ss_pred CCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCC
Q 019876 148 DGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACT 220 (334)
Q Consensus 148 ~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~ 220 (334)
...+++++|||+|.+|+|+|..|.+ .|. +||+++|.+.+++.++
T Consensus 155 --------~~~~~~v~ViGgG~~g~E~A~~l~~--------------------~g~-~Vtli~~~~~~l~~~~ 198 (441)
T PRK08010 155 --------KELPGHLGILGGGYIGVEFASMFAN--------------------FGS-KVTILEAASLFLPRED 198 (441)
T ss_pred --------cccCCeEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecCCCCCCCcC
Confidence 0146799999999999999999986 565 6999999887765543
No 33
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.88 E-value=3.4e-21 Score=187.13 Aligned_cols=162 Identities=19% Similarity=0.292 Sum_probs=114.9
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCCCCcch--------------------------
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPET-------------------------- 71 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p~~~~~-------------------------- 71 (334)
.++|+||||||||++||..+++.| .+|+|+|+. .+||.+ +.||.|.+.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHG--AKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC--CcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 479999999999999999999997 999999985 567765 44777775210
Q ss_pred -----------hHHHHHHHHHhhcCCcEEEeCeEE--c-eEEec--ccceeccCeEEEeccCCCCCCCCCCCccCCCccc
Q 019876 72 -----------KIVINQFSRVVQHERCSFFGNVTL--G-SSVSL--SELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (334)
Q Consensus 72 -----------~~~~~~~~~~~~~~~i~~~~~~~v--~-~~v~~--~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~ 135 (334)
..+...+...+++.+++++.+... + ..+.+ ....+.||+||||||+ .|..|++||.+. ..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs-~p~~p~i~G~~~--~~~ 155 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGG-RPQKPNLPGHEL--GIT 155 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCC-cCCCCCCCCccc--eec
Confidence 012233445566778998877542 2 12222 2234689999999999 588889998642 222
Q ss_pred hhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
..+.. ... ..+++++|||+|++|+|+|..|++ .|. +|+++++.+.+
T Consensus 156 ~~~~~----~l~---------~~~~~vvVIGgG~~g~E~A~~l~~--------------------~G~-~Vtli~~~~~~ 201 (446)
T TIGR01424 156 SNEAF----HLP---------TLPKSILILGGGYIAVEFAGIWRG--------------------LGV-QVTLIYRGELI 201 (446)
T ss_pred hHHhh----ccc---------ccCCeEEEECCcHHHHHHHHHHHH--------------------cCC-eEEEEEeCCCC
Confidence 22221 110 146899999999999999999986 565 69999998877
Q ss_pred ccCCC
Q 019876 216 QAACT 220 (334)
Q Consensus 216 ~~~~~ 220 (334)
+..++
T Consensus 202 l~~~d 206 (446)
T TIGR01424 202 LRGFD 206 (446)
T ss_pred CcccC
Confidence 65443
No 34
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.88 E-value=1.2e-21 Score=186.41 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=116.1
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC-ccccc-cccCCCCcchhHHHH-HHHHHhhcCCcEEEeCeEEc
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVR-SGVAPDHPETKIVIN-QFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~-gg~~~-~~~~p~~~~~~~~~~-~~~~~~~~~~i~~~~~~~v~ 96 (334)
++|||||||+||+.+|..|++.+++.+|+||++++.. +.... ...+.+.....++.. ...+++++.+++++.+..+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 5899999999999999999998888999999987642 22111 111122223344443 24566677899998876542
Q ss_pred ------eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHH
Q 019876 97 ------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNV 170 (334)
Q Consensus 97 ------~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~ 170 (334)
+.+..++..+.||+||||||+ .|..|++||.+. +++...+... ... ...+..+++|+|||+|++
T Consensus 83 ~id~~~~~v~~~~~~~~yd~LVlATG~-~~~~p~i~G~~~--v~~~~~~~~~-~~~------~~~~~~~~~vvViGgG~~ 152 (377)
T PRK04965 83 DIDAEAQVVKSQGNQWQYDKLVLATGA-SAFVPPIPGREL--MLTLNSQQEY-RAA------ETQLRDAQRVLVVGGGLI 152 (377)
T ss_pred EEECCCCEEEECCeEEeCCEEEECCCC-CCCCCCCCCCce--EEEECCHHHH-HHH------HHHhhcCCeEEEECCCHH
Confidence 224444445789999999999 588889999754 4443332211 100 011235789999999999
Q ss_pred HHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccC
Q 019876 171 ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA 218 (334)
Q Consensus 171 g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~ 218 (334)
|+|+|..|.+ .+. +|+++++.+.++..
T Consensus 153 g~e~A~~L~~--------------------~g~-~Vtlv~~~~~~l~~ 179 (377)
T PRK04965 153 GTELAMDLCR--------------------AGK-AVTLVDNAASLLAS 179 (377)
T ss_pred HHHHHHHHHh--------------------cCC-eEEEEecCCcccch
Confidence 9999999986 454 69999998876543
No 35
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.88 E-value=4.7e-22 Score=204.64 Aligned_cols=212 Identities=19% Similarity=0.232 Sum_probs=146.6
Q ss_pred EEEECCchHHHHHHHHHhhcC-CCCeEEEEcCCCCCc-cccc-cccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc--
Q 019876 22 VCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPF-GLVR-SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-- 96 (334)
Q Consensus 22 vvIIGaG~aGl~aA~~l~~~~-~~~~v~vie~~~~~g-g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-- 96 (334)
|||||+|+||+++|..|++.. ++++|+||++++.++ ..+. ..+..+....+++.....+++++.+++++.++.+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 689999999999999998875 468999999998753 2111 11223333344554455667788899999886542
Q ss_pred ----eEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHH
Q 019876 97 ----SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVA 171 (334)
Q Consensus 97 ----~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g 171 (334)
+.+.+.++ .+.||+||||||+ .|+.|++||.+.++++..+++... ... ......+++++|||||++|
T Consensus 81 d~~~k~V~~~~g~~~~yD~LVlATGs-~p~~p~ipG~~~~~v~~~rt~~d~-~~i------~~~~~~~k~vvVVGgG~~G 152 (785)
T TIGR02374 81 DTDQKQVITDAGRTLSYDKLILATGS-YPFILPIPGADKKGVYVFRTIEDL-DAI------MAMAQRFKKAAVIGGGLLG 152 (785)
T ss_pred ECCCCEEEECCCcEeeCCEEEECCCC-CcCCCCCCCCCCCCEEEeCCHHHH-HHH------HHHhhcCCeEEEECCCHHH
Confidence 23444444 4689999999999 599999999988888876543211 100 0112357899999999999
Q ss_pred HHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhh
Q 019876 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251 (334)
Q Consensus 172 ~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~ 251 (334)
+|+|..|++ .|. +|+++++.+.++....++.+
T Consensus 153 lE~A~~L~~--------------------~G~-~Vtvv~~~~~ll~~~ld~~~--------------------------- 184 (785)
T TIGR02374 153 LEAAVGLQN--------------------LGM-DVSVIHHAPGLMAKQLDQTA--------------------------- 184 (785)
T ss_pred HHHHHHHHh--------------------cCC-eEEEEccCCchhhhhcCHHH---------------------------
Confidence 999999996 565 69999998876432222111
Q ss_pred hhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEe
Q 019876 252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT 312 (334)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~ 312 (334)
.+.+++.+ .+.||++++++.+++|. + ++++.+|.+.++
T Consensus 185 ----------~~~l~~~l---------~~~GV~v~~~~~v~~i~--~--~~~~~~v~~~dG 222 (785)
T TIGR02374 185 ----------GRLLQREL---------EQKGLTFLLEKDTVEIV--G--ATKADRIRFKDG 222 (785)
T ss_pred ----------HHHHHHHH---------HHcCCEEEeCCceEEEE--c--CCceEEEEECCC
Confidence 12223333 25689999999999997 5 466777777643
No 36
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.87 E-value=7.7e-22 Score=203.34 Aligned_cols=169 Identities=12% Similarity=0.111 Sum_probs=119.4
Q ss_pred CCeEEEECCchHHHHHHHHHhhcC--CCCeEEEEcCCCCCc-ccccc-ccCCCCcchhHHHHHHHHHhhcCCcEEEeCeE
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPF-GLVRS-GVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~--~~~~v~vie~~~~~g-g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (334)
+++|||||+|+||+.+|..|++.. ++++|+||++++.+. ..+.. ..+.. ...+++.....++++..+++++.+..
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~~~l~~~~~~~~~~~gI~~~~g~~ 81 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTAEELSLVREGFYEKHGIKVLVGER 81 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCHHHccCCCHHHHHhCCCEEEcCCE
Confidence 469999999999999999998763 358999999988752 22111 11111 22334444445677788999998865
Q ss_pred Ec------eEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcC
Q 019876 95 LG------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (334)
Q Consensus 95 v~------~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~ 167 (334)
+. +.|.+.++ .++||+||||||+ .|+.|++||.+.++++..+++.... .. ......+++++||||
T Consensus 82 V~~Id~~~~~V~~~~G~~i~yD~LVIATGs-~p~~p~ipG~~~~~v~~~rt~~d~~-~l------~~~~~~~k~vvVIGg 153 (847)
T PRK14989 82 AITINRQEKVIHSSAGRTVFYDKLIMATGS-YPWIPPIKGSETQDCFVYRTIEDLN-AI------EACARRSKRGAVVGG 153 (847)
T ss_pred EEEEeCCCcEEEECCCcEEECCEEEECCCC-CcCCCCCCCCCCCCeEEECCHHHHH-HH------HHHHhcCCeEEEECC
Confidence 42 23444444 4689999999999 5999999999888877554433211 00 001225789999999
Q ss_pred CHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc
Q 019876 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (334)
Q Consensus 168 G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~ 217 (334)
|++|+|+|..|++ .|. +|+|+++.+.++.
T Consensus 154 G~iGlE~A~~L~~--------------------~G~-~VtvVe~~~~ll~ 182 (847)
T PRK14989 154 GLLGLEAAGALKN--------------------LGV-ETHVIEFAPMLMA 182 (847)
T ss_pred CHHHHHHHHHHHH--------------------cCC-eEEEEeccccchh
Confidence 9999999999996 676 5999999887654
No 37
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.4e-21 Score=161.23 Aligned_cols=207 Identities=19% Similarity=0.304 Sum_probs=151.5
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC----CCcccccc----ccCCCCcc---hhHHHHHHHHHhhcCCc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP----TPFGLVRS----GVAPDHPE---TKIVINQFSRVVQHERC 87 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~----~~gg~~~~----~~~p~~~~---~~~~~~~~~~~~~~~~i 87 (334)
..+|+|||+|||+..||.|+++.. ++.+|||-.- .+||++.. .-+|+|+. ..++.+.++.+.+++|.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaarae--lkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt 85 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAE--LKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGT 85 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcc--cCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcc
Confidence 459999999999999999999985 8999999542 25776643 12466653 45789999999999999
Q ss_pred EEEeCeEEceE-------EecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHH---hcCCCCCCCCCCCCC
Q 019876 88 SFFGNVTLGSS-------VSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW---YNGHPDGKNLSPDLK 157 (334)
Q Consensus 88 ~~~~~~~v~~~-------v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (334)
++++.++-..+ +..+.....+|+||+|||+ ..+.+.+||... + .|++. .+..||.. ..++
T Consensus 86 ~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGA-sAkRl~~pg~ge-~-----~fWqrGiSaCAVCDGa---apif 155 (322)
T KOG0404|consen 86 EIITETVSKVDLSSKPFKLWTDARPVTADAVILATGA-SAKRLHLPGEGE-G-----EFWQRGISACAVCDGA---APIF 155 (322)
T ss_pred eeeeeehhhccccCCCeEEEecCCceeeeeEEEeccc-ceeeeecCCCCc-c-----hHHhcccchhhcccCc---chhh
Confidence 99887654322 2233445689999999999 588889998721 1 12221 12334432 2356
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~ 237 (334)
++|..+|||||.++||.|.+|.+ ++ ++|+|++|++.+.
T Consensus 156 rnk~laVIGGGDsA~EEA~fLtk--------------------ya-skVyii~Rrd~fR--------------------- 193 (322)
T KOG0404|consen 156 RNKPLAVIGGGDSAMEEALFLTK--------------------YA-SKVYIIHRRDHFR--------------------- 193 (322)
T ss_pred cCCeeEEEcCcHHHHHHHHHHHh--------------------hc-cEEEEEEEhhhhh---------------------
Confidence 89999999999999999999996 44 5799999998762
Q ss_pred ccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEee
Q 019876 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313 (334)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~ 313 (334)
..+++|+.+. ++.+|++++|+.+.+.. | +.+.+.++++.+..
T Consensus 194 -----------------------As~~Mq~ra~--------~npnI~v~~nt~~~ea~--g-d~~~l~~l~ikn~~ 235 (322)
T KOG0404|consen 194 -----------------------ASKIMQQRAE--------KNPNIEVLYNTVAVEAL--G-DGKLLNGLRIKNVK 235 (322)
T ss_pred -----------------------HHHHHHHHHh--------cCCCeEEEechhhhhhc--c-CcccccceEEEecc
Confidence 1235555554 47889999999999988 7 34678888888743
No 38
>PTZ00058 glutathione reductase; Provisional
Probab=99.87 E-value=6.6e-21 Score=188.58 Aligned_cols=183 Identities=16% Similarity=0.269 Sum_probs=132.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc-ccccccCCCCcchh------------------------
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHPETK------------------------ 72 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg-~~~~~~~p~~~~~~------------------------ 72 (334)
..++|+||||||||+.||..+++.| .+|+|||++. +|| +++.||.|.+.+..
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G--~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNK--AKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcC--CeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 4579999999999999999999997 9999999974 555 55668877653110
Q ss_pred -HH-----------HHHHHHHhhcCCcEEEeCeEE--c-eEEe----------------------------cccc-eecc
Q 019876 73 -IV-----------INQFSRVVQHERCSFFGNVTL--G-SSVS----------------------------LSEL-RQLY 108 (334)
Q Consensus 73 -~~-----------~~~~~~~~~~~~i~~~~~~~v--~-~~v~----------------------------~~~~-~~~y 108 (334)
.+ ...+.+.+++.+|+++.+... + .+|. .+++ .+.|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~a 203 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEG 203 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEEC
Confidence 11 112234456678998877631 1 1121 1233 4689
Q ss_pred CeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccc
Q 019876 109 HVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATT 188 (334)
Q Consensus 109 d~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~ 188 (334)
|+||||||+ .|+.|++||.+ .+++..+++. +..+++|+|||+|++|+|+|..|++
T Consensus 204 d~lVIATGS-~P~~P~IpG~~--~v~ts~~~~~--------------l~~pk~VvIIGgG~iGlE~A~~l~~-------- 258 (561)
T PTZ00058 204 KNILIAVGN-KPIFPDVKGKE--FTISSDDFFK--------------IKEAKRIGIAGSGYIAVELINVVNR-------- 258 (561)
T ss_pred CEEEEecCC-CCCCCCCCCce--eEEEHHHHhh--------------ccCCCEEEEECCcHHHHHHHHHHHH--------
Confidence 999999999 58889999864 3444433321 1136899999999999999999986
Q ss_pred cccHHHHHHHhcCCcceEEEEeecCccccCCCH---HHHHHHHcCCceEEEEccCc
Q 019876 189 DIASYAWTALEGSSIRKVYLVGRRGPVQAACTA---KELREILGIKNLYVHIREDD 241 (334)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~~~~~~~ 241 (334)
.|. +||+++++++++..+++ +.+.+.|+..||+++++...
T Consensus 259 ------------~G~-~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V 301 (561)
T PTZ00058 259 ------------LGA-ESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANV 301 (561)
T ss_pred ------------cCC-cEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 676 69999999988877765 45667788899999887643
No 39
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.87 E-value=1.1e-20 Score=184.61 Aligned_cols=164 Identities=17% Similarity=0.240 Sum_probs=114.6
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc-ccccccCCCCcch--------------------------
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHPET-------------------------- 71 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg-~~~~~~~p~~~~~-------------------------- 71 (334)
+++|+||||||+|++||..+++.+ .+|+|||+.+.+|| ++++||.|.+.+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLG--LETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDI 81 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCH
Confidence 589999999999999999999997 99999999766777 4455777764321
Q ss_pred hHHHHH-----------HHHHhhcCCcEEEeCeEE--c-eE--Eecccc---eeccCeEEEeccCCCCCC-CCCCCccCC
Q 019876 72 KIVINQ-----------FSRVVQHERCSFFGNVTL--G-SS--VSLSEL---RQLYHVVVLAYGAESDRA-LGIPGEDLI 131 (334)
Q Consensus 72 ~~~~~~-----------~~~~~~~~~i~~~~~~~v--~-~~--v~~~~~---~~~yd~lIlATGs~~p~~-~~ipG~~~~ 131 (334)
..+..+ +...++..+++++.+... + .. +...++ .+.||+||||||+ .|+. |.+++ +.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~~p~~~~-~~~ 159 (471)
T PRK06467 82 DKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGS-RPIQLPFIPH-DDP 159 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCC-CCCCCCCCCC-CCC
Confidence 111111 123355668999877643 1 12 332233 4689999999999 5764 44554 344
Q ss_pred CccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEee
Q 019876 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGR 211 (334)
Q Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r 211 (334)
++++..+.+. . ...+++++|||+|++|+|+|..|++ .|. +||++++
T Consensus 160 ~v~~~~~~~~----~---------~~~~~~vvIiGgG~iG~E~A~~l~~--------------------~G~-~Vtlv~~ 205 (471)
T PRK06467 160 RIWDSTDALE----L---------KEVPKRLLVMGGGIIGLEMGTVYHR--------------------LGS-EVDVVEM 205 (471)
T ss_pred cEEChHHhhc----c---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-CEEEEec
Confidence 5655443331 1 0145899999999999999999986 675 5999999
Q ss_pred cCccccCCC
Q 019876 212 RGPVQAACT 220 (334)
Q Consensus 212 ~~~~~~~~~ 220 (334)
.+.+++.++
T Consensus 206 ~~~il~~~d 214 (471)
T PRK06467 206 FDQVIPAAD 214 (471)
T ss_pred CCCCCCcCC
Confidence 988775554
No 40
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.87 E-value=1.3e-20 Score=183.96 Aligned_cols=162 Identities=19% Similarity=0.284 Sum_probs=112.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCCCCcc--------------------------
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPE-------------------------- 70 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p~~~~-------------------------- 70 (334)
..++|+||||||||++||..+++.+ .+|+|+|+.+ +||.+ ..+|.|.+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G--~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLG--LKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCC--CcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 4579999999999999999999997 9999999987 67754 5577675421
Q ss_pred hhHHHHH-----------HHHHhhcCCcEEEeCeEEc---eEEecc----cceeccCeEEEeccCCCCCCCCCCCccCCC
Q 019876 71 TKIVINQ-----------FSRVVQHERCSFFGNVTLG---SSVSLS----ELRQLYHVVVLAYGAESDRALGIPGEDLIG 132 (334)
Q Consensus 71 ~~~~~~~-----------~~~~~~~~~i~~~~~~~v~---~~v~~~----~~~~~yd~lIlATGs~~p~~~~ipG~~~~~ 132 (334)
..++.++ +...++..+++++.+.... ..+.+. ...+.||+||||||+ .|..| ||.+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs-~p~~~--pg~~~~~ 156 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGS-RPREL--PGIEIDG 156 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCC-CCCCC--CCCCCCC
Confidence 1122222 3345566789988776431 123332 134689999999999 46543 5554333
Q ss_pred --ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEe
Q 019876 133 --VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (334)
Q Consensus 133 --v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~ 210 (334)
+++..+... . ...+++++|||+|++|+|+|..|++ .|. +||+++
T Consensus 157 ~~v~~~~~~~~----~---------~~~~~~vvVvGgG~~g~E~A~~l~~--------------------~g~-~Vtli~ 202 (462)
T PRK06416 157 RVIWTSDEALN----L---------DEVPKSLVVIGGGYIGVEFASAYAS--------------------LGA-EVTIVE 202 (462)
T ss_pred CeEEcchHhhC----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEE
Confidence 444333221 1 0145899999999999999999986 565 699999
Q ss_pred ecCccccCC
Q 019876 211 RRGPVQAAC 219 (334)
Q Consensus 211 r~~~~~~~~ 219 (334)
|.+.+++.+
T Consensus 203 ~~~~~l~~~ 211 (462)
T PRK06416 203 ALPRILPGE 211 (462)
T ss_pred cCCCcCCcC
Confidence 998776444
No 41
>PRK06116 glutathione reductase; Validated
Probab=99.87 E-value=5.9e-21 Score=185.79 Aligned_cols=162 Identities=17% Similarity=0.232 Sum_probs=113.8
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc-cccccCCCCcch--------------------------
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPET-------------------------- 71 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~-~~~~~~p~~~~~-------------------------- 71 (334)
.++|+||||||||++||..|++.+ .+|+|||+. .+||. ++.+|.|.+.+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G--~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYG--AKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFD 80 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcC
Confidence 479999999999999999999997 999999986 56664 445666654110
Q ss_pred -hHH-----------HHHHHHHhhcCCcEEEeCeEE---ceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccch
Q 019876 72 -KIV-----------INQFSRVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136 (334)
Q Consensus 72 -~~~-----------~~~~~~~~~~~~i~~~~~~~v---~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~ 136 (334)
..+ ...+...+...+++++.+... ...+.++...+.||+||||||+ .|+.|++||.+. +++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs-~p~~p~i~g~~~--~~~~ 157 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGG-RPSIPDIPGAEY--GITS 157 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCC-CCCCCCCCCcce--eEch
Confidence 111 112233455678998877642 1244453345789999999999 588889998642 3333
Q ss_pred hhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (334)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~ 216 (334)
.++.. . ...+++|+|||+|.+|+|+|..|++ .|. +|++++|++.++
T Consensus 158 ~~~~~----~---------~~~~~~vvViGgG~~g~E~A~~l~~--------------------~g~-~Vtlv~~~~~~l 203 (450)
T PRK06116 158 DGFFA----L---------EELPKRVAVVGAGYIAVEFAGVLNG--------------------LGS-ETHLFVRGDAPL 203 (450)
T ss_pred hHhhC----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEecCCCCc
Confidence 22211 1 0146899999999999999999986 565 699999988765
Q ss_pred cCCC
Q 019876 217 AACT 220 (334)
Q Consensus 217 ~~~~ 220 (334)
..++
T Consensus 204 ~~~~ 207 (450)
T PRK06116 204 RGFD 207 (450)
T ss_pred cccC
Confidence 4443
No 42
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.87 E-value=1.8e-21 Score=186.39 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=114.5
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC-ccccc--cccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVR--SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~-gg~~~--~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 95 (334)
.++|||||||+||++||..|++.+++.+|+|+++++.. +.... ..+..... .........+++...+++++.++.+
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~g~~V 81 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDS-PQLQQVLPANWWQENNVHLHSGVTI 81 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCC-ccccccCCHHHHHHCCCEEEcCCEE
Confidence 46899999999999999999999877899999998653 21110 00000000 0000011134456678999988654
Q ss_pred c------eEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCC
Q 019876 96 G------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQG 168 (334)
Q Consensus 96 ~------~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G 168 (334)
. +.+.+.++ .+.||+||||||+ .|+.+++++...+++++.++...... +...+..+++|+|||+|
T Consensus 82 ~~id~~~~~v~~~~g~~~~yd~LViATGs-~~~~~p~~~~~~~~v~~~~~~~da~~-------l~~~~~~~~~vvViGgG 153 (396)
T PRK09754 82 KTLGRDTRELVLTNGESWHWDQLFIATGA-AARPLPLLDALGERCFTLRHAGDAAR-------LREVLQPERSVVIVGAG 153 (396)
T ss_pred EEEECCCCEEEECCCCEEEcCEEEEccCC-CCCCCCCCCcCCCCEEecCCHHHHHH-------HHHHhhcCCeEEEECCC
Confidence 1 23444444 4689999999999 58777877766677776543322110 11123367999999999
Q ss_pred HHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccC
Q 019876 169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA 218 (334)
Q Consensus 169 ~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~ 218 (334)
++|+|+|..|++ .|. +||++++.+.++..
T Consensus 154 ~ig~E~A~~l~~--------------------~g~-~Vtlv~~~~~~l~~ 182 (396)
T PRK09754 154 TIGLELAASATQ--------------------RRC-KVTVIELAATVMGR 182 (396)
T ss_pred HHHHHHHHHHHH--------------------cCC-eEEEEecCCcchhh
Confidence 999999999986 565 69999998877544
No 43
>PLN02546 glutathione reductase
Probab=99.87 E-value=1.4e-20 Score=186.39 Aligned_cols=163 Identities=15% Similarity=0.176 Sum_probs=115.3
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC---------CCCcc-ccccccCCCCcchh----------------
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL---------PTPFG-LVRSGVAPDHPETK---------------- 72 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~---------~~~gg-~~~~~~~p~~~~~~---------------- 72 (334)
.++|+|||+||+|+.||..+++.| .+|+|||+. ..+|| |+++||.|.+.+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFG--ASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 478999999999999999999997 999999961 23455 44557766543110
Q ss_pred ----------------------HHHHHHHHHhhcCCcEEEeCeE--Ec-eEEecccceeccCeEEEeccCCCCCCCCCCC
Q 019876 73 ----------------------IVINQFSRVVQHERCSFFGNVT--LG-SSVSLSELRQLYHVVVLAYGAESDRALGIPG 127 (334)
Q Consensus 73 ----------------------~~~~~~~~~~~~~~i~~~~~~~--v~-~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG 127 (334)
.+..++.+.+++.+++++.+.. ++ ..+.++...+.||+||||||+ .|..|++||
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs-~p~~P~IpG 235 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGG-RPFIPDIPG 235 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCC-CCCCCCCCC
Confidence 1122344556677899887643 22 234443345789999999999 588889998
Q ss_pred ccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEE
Q 019876 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY 207 (334)
Q Consensus 128 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt 207 (334)
.+ .++++.++.. . ...+++|+|||+|++|+|+|..|+. .+. +|+
T Consensus 236 ~~--~v~~~~~~l~----~---------~~~~k~V~VIGgG~iGvE~A~~L~~--------------------~g~-~Vt 279 (558)
T PLN02546 236 IE--HAIDSDAALD----L---------PSKPEKIAIVGGGYIALEFAGIFNG--------------------LKS-DVH 279 (558)
T ss_pred hh--hccCHHHHHh----c---------cccCCeEEEECCCHHHHHHHHHHHh--------------------cCC-eEE
Confidence 64 2444433221 1 1256899999999999999999985 554 699
Q ss_pred EEeecCccccCCC
Q 019876 208 LVGRRGPVQAACT 220 (334)
Q Consensus 208 iv~r~~~~~~~~~ 220 (334)
++++.+.++..++
T Consensus 280 lv~~~~~il~~~d 292 (558)
T PLN02546 280 VFIRQKKVLRGFD 292 (558)
T ss_pred EEEeccccccccC
Confidence 9999887765444
No 44
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.87 E-value=1.7e-20 Score=183.61 Aligned_cols=165 Identities=18% Similarity=0.220 Sum_probs=110.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCCCCcchh------------------------
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPETK------------------------ 72 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p~~~~~~------------------------ 72 (334)
..++|+||||||||++||..|++.| .+|+|||+. .+||.+ ++||.|.+.+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLG--LKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD 79 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 3589999999999999999999997 999999996 566655 557767643111
Q ss_pred --HH-------H----HHHHHHhhcCCcEEEeCeEE--c----------eEEecccc---eeccCeEEEeccCCCCCCCC
Q 019876 73 --IV-------I----NQFSRVVQHERCSFFGNVTL--G----------SSVSLSEL---RQLYHVVVLAYGAESDRALG 124 (334)
Q Consensus 73 --~~-------~----~~~~~~~~~~~i~~~~~~~v--~----------~~v~~~~~---~~~yd~lIlATGs~~p~~~~ 124 (334)
.+ . ....+.+++.+++++.+... + ..+...++ .+.||+||||||+ .|..++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs-~p~~~p 158 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGS-RPVELP 158 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCC-CCCCCC
Confidence 01 1 11224456668998877542 1 12333333 4689999999999 475443
Q ss_pred CCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcc
Q 019876 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (334)
Q Consensus 125 ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (334)
..+.+...+++..+... .. ..+++|+|||+|++|+|+|..|++ .|.
T Consensus 159 ~~~~~~~~~~~~~~~~~----~~---------~~~~~vvIIGgG~~G~E~A~~l~~--------------------~g~- 204 (472)
T PRK05976 159 GLPFDGEYVISSDEALS----LE---------TLPKSLVIVGGGVIGLEWASMLAD--------------------FGV- 204 (472)
T ss_pred CCCCCCceEEcchHhhC----cc---------ccCCEEEEECCCHHHHHHHHHHHH--------------------cCC-
Confidence 22222222443333221 10 135899999999999999999986 565
Q ss_pred eEEEEeecCccccCCC
Q 019876 205 KVYLVGRRGPVQAACT 220 (334)
Q Consensus 205 ~Vtiv~r~~~~~~~~~ 220 (334)
+||+++|.+.++..++
T Consensus 205 ~Vtli~~~~~il~~~~ 220 (472)
T PRK05976 205 EVTVVEAADRILPTED 220 (472)
T ss_pred eEEEEEecCccCCcCC
Confidence 6999999987765443
No 45
>PRK10262 thioredoxin reductase; Provisional
Probab=99.87 E-value=2.5e-20 Score=173.56 Aligned_cols=204 Identities=20% Similarity=0.255 Sum_probs=135.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc-c---CCCC---cchhHHHHHHHHHhhcCCcEEE
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-V---APDH---PETKIVINQFSRVVQHERCSFF 90 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~-~---~p~~---~~~~~~~~~~~~~~~~~~i~~~ 90 (334)
..++|+||||||||++||.+|.+.+ .++++||.. ..||.+... . +|.. .....+..++.++...++++++
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g--~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARAN--LQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEII 81 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CCeEEEEee-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 4679999999999999999999997 889999964 556654321 0 1321 2233566777777777777766
Q ss_pred eCeEEce-------EEecccceeccCeEEEeccCCCCCCCCCCCcc---CCCccchhhHHHHhcCCCCCCCCCCCCCCCC
Q 019876 91 GNVTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTD 160 (334)
Q Consensus 91 ~~~~v~~-------~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k 160 (334)
.+..... .++.+...+.||+||||||+ .|+.|++||.+ ..+++.+.. ++ .....++
T Consensus 82 ~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~-~~~~~~i~g~~~~~~~~v~~~~~--------~~-----~~~~~g~ 147 (321)
T PRK10262 82 FDHINKVDLQNRPFRLTGDSGEYTCDALIIATGA-SARYLGLPSEEAFKGRGVSACAT--------CD-----GFFYRNQ 147 (321)
T ss_pred eeEEEEEEecCCeEEEEecCCEEEECEEEECCCC-CCCCCCCCCHHHcCCCcEEEeec--------CC-----HHHcCCC
Confidence 5532211 12222334689999999999 48888999864 223322210 00 1123689
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccC
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~ 240 (334)
+|+|||+|++|+|+|..|++ .+ ++|++++|++.+. .. +.+.
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~--------------------~~-~~Vtlv~~~~~~~--~~-~~~~--------------- 188 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSN--------------------IA-SEVHLIHRRDGFR--AE-KILI--------------- 188 (321)
T ss_pred EEEEECCCHHHHHHHHHHHh--------------------hC-CEEEEEEECCccC--CC-HHHH---------------
Confidence 99999999999999999996 44 4799999987542 11 1111
Q ss_pred ccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (334)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~ 311 (334)
+.+++. +++.||++++++.+++|. + +++.+++|++.+
T Consensus 189 ----------------------~~~~~~---------l~~~gV~i~~~~~v~~v~--~-~~~~~~~v~~~~ 225 (321)
T PRK10262 189 ----------------------KRLMDK---------VENGNIILHTNRTLEEVT--G-DQMGVTGVRLRD 225 (321)
T ss_pred ----------------------HHHHhh---------ccCCCeEEEeCCEEEEEE--c-CCccEEEEEEEE
Confidence 112222 246789999999999997 5 344677787764
No 46
>PLN02507 glutathione reductase
Probab=99.86 E-value=1.7e-20 Score=184.24 Aligned_cols=175 Identities=19% Similarity=0.260 Sum_probs=116.6
Q ss_pred ccccccccCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcC---------CCCCcccc-ccccCCCCcch-----
Q 019876 7 WLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR---------LPTPFGLV-RSGVAPDHPET----- 71 (334)
Q Consensus 7 ~~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~---------~~~~gg~~-~~~~~p~~~~~----- 71 (334)
|++...+.+....++|+||||||+|+.||..+.+.| .+|+|||+ ...+||.| +.||.|.+...
T Consensus 13 ~~~~~~~~~~~~~yDvvVIG~GpaG~~aA~~a~~~G--~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~ 90 (499)
T PLN02507 13 KVNADEANATHYDFDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATF 90 (499)
T ss_pred hHhhhhhcccccccCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHH
Confidence 444333322234579999999999999999999997 99999996 24467765 44776654321
Q ss_pred ----------------------hHHH-----------HHHHHHhhcCCcEEEeCeE--Ec---eEEecccc---eeccCe
Q 019876 72 ----------------------KIVI-----------NQFSRVVQHERCSFFGNVT--LG---SSVSLSEL---RQLYHV 110 (334)
Q Consensus 72 ----------------------~~~~-----------~~~~~~~~~~~i~~~~~~~--v~---~~v~~~~~---~~~yd~ 110 (334)
..+. ..+...+...+|+++.+.. ++ ..++..++ .+.||+
T Consensus 91 ~~~~~~~~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~ 170 (499)
T PLN02507 91 GGEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKH 170 (499)
T ss_pred HHHHHHHHhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCE
Confidence 0111 1122344557888887743 22 23333343 358899
Q ss_pred EEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccc
Q 019876 111 VVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDI 190 (334)
Q Consensus 111 lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~ 190 (334)
||||||+ .|..|++||.+. ..+..+... . . ..+++|+|||+|++|+|+|..|++
T Consensus 171 LIIATGs-~p~~p~ipG~~~--~~~~~~~~~----l------~---~~~k~vvVIGgG~ig~E~A~~l~~---------- 224 (499)
T PLN02507 171 ILIATGS-RAQRPNIPGKEL--AITSDEALS----L------E---ELPKRAVVLGGGYIAVEFASIWRG---------- 224 (499)
T ss_pred EEEecCC-CCCCCCCCCccc--eechHHhhh----h------h---hcCCeEEEECCcHHHHHHHHHHHH----------
Confidence 9999999 588889998642 222222211 1 0 136899999999999999999985
Q ss_pred cHHHHHHHhcCCcceEEEEeecCccccCCC
Q 019876 191 ASYAWTALEGSSIRKVYLVGRRGPVQAACT 220 (334)
Q Consensus 191 ~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~ 220 (334)
.|. +|+|++|.+.++..++
T Consensus 225 ----------~G~-~Vtli~~~~~~l~~~d 243 (499)
T PLN02507 225 ----------MGA-TVDLFFRKELPLRGFD 243 (499)
T ss_pred ----------cCC-eEEEEEecCCcCcccC
Confidence 565 6999999887654444
No 47
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.86 E-value=3.5e-20 Score=181.00 Aligned_cols=166 Identities=21% Similarity=0.223 Sum_probs=115.7
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchh--------------------------
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETK-------------------------- 72 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~-------------------------- 72 (334)
+++|+|||+||+|+.||..+.+.+ .+|+|||++...|.+++.+|.|.+.+..
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g--~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLG--ADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 468999999999999999999997 9999999976434445557777643211
Q ss_pred ---HH-----------HHHHHHHhhcCCcEEEeCeEEc-------eE--Eecccc---eeccCeEEEeccCCCCCCCCCC
Q 019876 73 ---IV-----------INQFSRVVQHERCSFFGNVTLG-------SS--VSLSEL---RQLYHVVVLAYGAESDRALGIP 126 (334)
Q Consensus 73 ---~~-----------~~~~~~~~~~~~i~~~~~~~v~-------~~--v~~~~~---~~~yd~lIlATGs~~p~~~~ip 126 (334)
.+ ...+.+.++..+++++.+.... .. +...++ .+.||+||||||+ .|..|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs-~p~~~p~~ 157 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGA-SPRILPTA 157 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCC-CCCCCCCC
Confidence 00 1123345566789998875432 22 323333 4689999999999 58766665
Q ss_pred CccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceE
Q 019876 127 GEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV 206 (334)
Q Consensus 127 G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V 206 (334)
+.+...+++..++.. .. ..+++++|||+|.+|+|+|..|++ .|. +|
T Consensus 158 ~~~~~~v~~~~~~~~----~~---------~~~~~vvVIGgG~ig~E~A~~l~~--------------------~g~-~V 203 (466)
T PRK07845 158 EPDGERILTWRQLYD----LD---------ELPEHLIVVGSGVTGAEFASAYTE--------------------LGV-KV 203 (466)
T ss_pred CCCCceEEeehhhhc----cc---------ccCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eE
Confidence 554455665544321 10 135899999999999999999986 565 69
Q ss_pred EEEeecCccccCCCH
Q 019876 207 YLVGRRGPVQAACTA 221 (334)
Q Consensus 207 tiv~r~~~~~~~~~~ 221 (334)
|++++.+.++..+++
T Consensus 204 tli~~~~~~l~~~d~ 218 (466)
T PRK07845 204 TLVSSRDRVLPGEDA 218 (466)
T ss_pred EEEEcCCcCCCCCCH
Confidence 999999887665543
No 48
>PRK14694 putative mercuric reductase; Provisional
Probab=99.86 E-value=5.2e-20 Score=179.92 Aligned_cols=162 Identities=20% Similarity=0.260 Sum_probs=108.8
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc-cccCCCCcc-------------------------
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDHPE------------------------- 70 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~-~~~~p~~~~------------------------- 70 (334)
...++|+||||||||++||..|++.+ .+|+|||+. .+||.|. .||.|.+..
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g--~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~ 80 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERG--ARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV 80 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCC--CcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence 45689999999999999999999997 899999997 4666553 366554321
Q ss_pred --hhHHHHHH------------HHHhhc-CCcEEEeCeEEc-----eEEecccc---eeccCeEEEeccCCCCCCCCCCC
Q 019876 71 --TKIVINQF------------SRVVQH-ERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPG 127 (334)
Q Consensus 71 --~~~~~~~~------------~~~~~~-~~i~~~~~~~v~-----~~v~~~~~---~~~yd~lIlATGs~~p~~~~ipG 127 (334)
...+..+. ...+.. .+++++.+.... ..+.+.++ +++||+||||||+ .|+.|++||
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs-~p~~p~i~G 159 (468)
T PRK14694 81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGA-RPAEPPVPG 159 (468)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCC-CCCCCCCCC
Confidence 01111111 111222 367777665431 23443333 4689999999999 589999999
Q ss_pred ccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEE
Q 019876 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY 207 (334)
Q Consensus 128 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt 207 (334)
.+...+++..+... . . ..+++++|||+|++|+|+|..|++ .+. +|+
T Consensus 160 ~~~~~~~~~~~~~~----l------~---~~~~~vvViG~G~~G~E~A~~l~~--------------------~g~-~Vt 205 (468)
T PRK14694 160 LAETPYLTSTSALE----L------D---HIPERLLVIGASVVALELAQAFAR--------------------LGS-RVT 205 (468)
T ss_pred CCCCceEcchhhhc----h------h---cCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEE
Confidence 76433333322110 0 0 136899999999999999999986 565 699
Q ss_pred EEeecCcccc
Q 019876 208 LVGRRGPVQA 217 (334)
Q Consensus 208 iv~r~~~~~~ 217 (334)
++.+ ++++.
T Consensus 206 lv~~-~~~l~ 214 (468)
T PRK14694 206 VLAR-SRVLS 214 (468)
T ss_pred EEEC-CCCCC
Confidence 9986 44443
No 49
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.86 E-value=2.9e-20 Score=181.26 Aligned_cols=185 Identities=17% Similarity=0.197 Sum_probs=130.7
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcch----------------------------
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET---------------------------- 71 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~---------------------------- 71 (334)
|+|+|||+||||++||..+++.+ .+|+|||+++..|.+++.||.|.+.+.
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g--~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNG--KNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 48999999999999999999987 999999998655556666777744321
Q ss_pred hHHHH-----------HHHHHhhcCCcEEEeCeEE---ceE--Eecccc--eeccCeEEEeccCCCCCCCCCCCccCCCc
Q 019876 72 KIVIN-----------QFSRVVQHERCSFFGNVTL---GSS--VSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGV 133 (334)
Q Consensus 72 ~~~~~-----------~~~~~~~~~~i~~~~~~~v---~~~--v~~~~~--~~~yd~lIlATGs~~p~~~~ipG~~~~~v 133 (334)
..+.. .....++..+++++.+... ... +...+. .+.||+||||||+ .|+.+++++.+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs-~p~~~p~~~~~~~~v 157 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGS-EPTELPFAPFDGKWI 157 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCC-CCCCCCCCCCCCCeE
Confidence 11111 1122344567888766542 122 222232 4689999999999 588788887665556
Q ss_pred cchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (334)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~ 213 (334)
++..+... .. ..+++++|||+|++|+|+|..|.+ .|. +|+++++.+
T Consensus 158 ~~~~~~~~----~~---------~~~~~vvIIGgG~iG~E~A~~l~~--------------------~g~-~Vtli~~~~ 203 (458)
T PRK06912 158 INSKHAMS----LP---------SIPSSLLIVGGGVIGCEFASIYSR--------------------LGT-KVTIVEMAP 203 (458)
T ss_pred EcchHHhC----cc---------ccCCcEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEecCC
Confidence 65543321 11 135899999999999999999885 565 699999999
Q ss_pred ccccCCCH---HHHHHHHcCCceEEEEccCc
Q 019876 214 PVQAACTA---KELREILGIKNLYVHIREDD 241 (334)
Q Consensus 214 ~~~~~~~~---~~~~~~l~~~gv~~~~~~~~ 241 (334)
.++..+++ +.+.+.|+..||+++++...
T Consensus 204 ~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V 234 (458)
T PRK06912 204 QLLPGEDEDIAHILREKLENDGVKIFTGAAL 234 (458)
T ss_pred CcCccccHHHHHHHHHHHHHCCCEEEECCEE
Confidence 88777654 45666777889999987543
No 50
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.86 E-value=3.9e-20 Score=184.07 Aligned_cols=159 Identities=23% Similarity=0.263 Sum_probs=113.9
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-cc---CCCCc--chhHHHHHHHHHhhcCCcEEEeC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GV---APDHP--ETKIVINQFSRVVQHERCSFFGN 92 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~---~p~~~--~~~~~~~~~~~~~~~~~i~~~~~ 92 (334)
.++|+||||||||++||.+|++.+ ++|+|||++ ..||.+.. .. +|+.. ...++..++.+.++..+++++..
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g--~~V~liE~~-~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~ 80 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAK--LDTLIIEKD-DFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQA 80 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecC-CCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEecc
Confidence 579999999999999999999987 999999996 56666532 11 23322 23467777888888889988644
Q ss_pred eEEce-------EEecccceeccCeEEEeccCCCCCCCCCCCcc---CCCccchhhHHHHhcCCCCCCCCCCCCCCCCeE
Q 019876 93 VTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (334)
Q Consensus 93 ~~v~~-------~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~v 162 (334)
..... .+...+....||+||||||+ .|+.|++||.+ ..+++.+. .++ .....+++|
T Consensus 81 ~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa-~p~~~~ipG~~~~~~~~v~~~~--------~~~-----~~~~~g~~V 146 (555)
T TIGR03143 81 EVLDVDFDGDIKTIKTARGDYKTLAVLIATGA-SPRKLGFPGEEEFTGRGVAYCA--------TCD-----GEFFTGMDV 146 (555)
T ss_pred EEEEEEecCCEEEEEecCCEEEEeEEEECCCC-ccCCCCCCCHHHhCCceEEEEe--------ecC-----hhhcCCCEE
Confidence 33221 23333445678999999999 58889999964 22333221 111 113368999
Q ss_pred EEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
+|||||++|+|+|..|++ .+. +|++++|.+.+
T Consensus 147 vVIGgG~~g~E~A~~L~~--------------------~g~-~Vtli~~~~~~ 178 (555)
T TIGR03143 147 FVIGGGFAAAEEAVFLTR--------------------YAS-KVTVIVREPDF 178 (555)
T ss_pred EEECCCHHHHHHHHHHHc--------------------cCC-EEEEEEeCCcc
Confidence 999999999999999986 554 69999998754
No 51
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.85 E-value=6.6e-20 Score=179.02 Aligned_cols=163 Identities=15% Similarity=0.249 Sum_probs=110.0
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCCCCcchhH--HH--------------------
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPETKI--VI-------------------- 75 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p~~~~~~~--~~-------------------- 75 (334)
.++|+|||+||||++||..+.+.| .+|+|||+.+.+||.+ +.||.|.+.+... ..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G--~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~ 80 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLG--LKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLN 80 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccC
Confidence 479999999999999999999997 9999999866677764 5578787643211 00
Q ss_pred ----------------HHHHHHhhcCCcEEEeCeEE--c-eE--Eecccc---eeccCeEEEeccCCCCCCCCCCCccCC
Q 019876 76 ----------------NQFSRVVQHERCSFFGNVTL--G-SS--VSLSEL---RQLYHVVVLAYGAESDRALGIPGEDLI 131 (334)
Q Consensus 76 ----------------~~~~~~~~~~~i~~~~~~~v--~-~~--v~~~~~---~~~yd~lIlATGs~~p~~~~ipG~~~~ 131 (334)
......++..+++++.+... + .. +...++ .+.||+||||||+ .|. ++||.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs-~p~--~ipg~~~~ 157 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGS-EPT--PLPGVTID 157 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCC-CCC--CCCCCCCC
Confidence 01112233446777655321 1 12 222232 4689999999999 464 46776543
Q ss_pred C--ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEE
Q 019876 132 G--VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV 209 (334)
Q Consensus 132 ~--v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv 209 (334)
+ +++..+++. . ...+++|+|||+|++|+|+|..|.+ .|. +||++
T Consensus 158 ~~~~~~~~~~~~----~---------~~~~~~vvIIGgG~ig~E~A~~l~~--------------------~G~-~Vtli 203 (466)
T PRK06115 158 NQRIIDSTGALS----L---------PEVPKHLVVIGAGVIGLELGSVWRR--------------------LGA-QVTVV 203 (466)
T ss_pred CCeEECHHHHhC----C---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEE
Confidence 4 333332221 0 0146999999999999999999886 565 69999
Q ss_pred eecCccccCCC
Q 019876 210 GRRGPVQAACT 220 (334)
Q Consensus 210 ~r~~~~~~~~~ 220 (334)
++.++++..++
T Consensus 204 e~~~~il~~~d 214 (466)
T PRK06115 204 EYLDRICPGTD 214 (466)
T ss_pred eCCCCCCCCCC
Confidence 99988765544
No 52
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.85 E-value=7.7e-20 Score=167.90 Aligned_cols=158 Identities=27% Similarity=0.379 Sum_probs=112.1
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-c---cCCCCc---chhHHHHHHHHHhhcCCcEEEeC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-G---VAPDHP---ETKIVINQFSRVVQHERCSFFGN 92 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~---~~p~~~---~~~~~~~~~~~~~~~~~i~~~~~ 92 (334)
++|+|||||+||++||..|++.+ .+|+|||+.+ +||.+.. . -+|++. ...++..++.+.+++.++++++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~ 77 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARAN--LKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYE 77 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEE
Confidence 48999999999999999999987 9999999886 5554432 1 124432 33577788888888889998874
Q ss_pred eEEce-------EEeccc-ceeccCeEEEeccCCCCCCCCCCCccC---CCccchhhHHHHhcCCCCCCCCCCCCCCCCe
Q 019876 93 VTLGS-------SVSLSE-LRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (334)
Q Consensus 93 ~~v~~-------~v~~~~-~~~~yd~lIlATGs~~p~~~~ipG~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 161 (334)
..+.. .+...+ ..+.||+||+|||+ .|..+++||.+. .+++.+. .. ......+++
T Consensus 78 ~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~-~~~~~~i~g~~~~~~~~~~~~~--------~~-----~~~~~~~~~ 143 (300)
T TIGR01292 78 EVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA-SARKLGIPGEDEFLGRGVSYCA--------TC-----DGPFFKNKE 143 (300)
T ss_pred EEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC-CcccCCCCChhhcCCccEEEee--------ec-----ChhhcCCCE
Confidence 33321 233333 24689999999999 588888998642 1222111 00 011236789
Q ss_pred EEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 162 vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
|+|||+|++|+|+|..|++ .+ ++|+++.|++.+
T Consensus 144 v~ViG~G~~~~e~a~~l~~--------------------~~-~~V~~v~~~~~~ 176 (300)
T TIGR01292 144 VAVVGGGDSAIEEALYLTR--------------------IA-KKVTLVHRRDKF 176 (300)
T ss_pred EEEECCChHHHHHHHHHHh--------------------hc-CEEEEEEeCccc
Confidence 9999999999999999985 44 579999998644
No 53
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.85 E-value=6.1e-20 Score=179.20 Aligned_cols=161 Identities=17% Similarity=0.246 Sum_probs=109.0
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCCCCcchh--HHHHH-------------------
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPETK--IVINQ------------------- 77 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p~~~~~~--~~~~~------------------- 77 (334)
++|+||||||||++||..|.+.+ .+|+|||+ +.+||.+ +++|.|.+.... ++...
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G--~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 78 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLG--LKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWE 78 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC--CeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHH
Confidence 68999999999999999999987 99999999 6677765 446766642211 11111
Q ss_pred ----------------HHHHhhcCCcEEEeCeEEc---eE--Eeccc--ceeccCeEEEeccCCCCCCCCCC-CccCCCc
Q 019876 78 ----------------FSRVVQHERCSFFGNVTLG---SS--VSLSE--LRQLYHVVVLAYGAESDRALGIP-GEDLIGV 133 (334)
Q Consensus 78 ----------------~~~~~~~~~i~~~~~~~v~---~~--v~~~~--~~~~yd~lIlATGs~~p~~~~ip-G~~~~~v 133 (334)
....++..+++++.+.... .. +...+ ..+.||+||||||+ .|+.|++| +.+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~-~p~~~~~~~~~~~~~~ 157 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGS-RPRSLPGPFDFDGEVV 157 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCC-CCCCCCCCCCCCCceE
Confidence 1123344567777665431 12 22222 24689999999999 58877776 3332234
Q ss_pred cchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (334)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~ 213 (334)
++..+... . ...+++++|||+|.+|+|+|..|.+ .|. +||+++|.+
T Consensus 158 ~~~~~~~~----~---------~~~~~~vvViGgG~~g~e~A~~l~~--------------------~g~-~Vtli~~~~ 203 (461)
T TIGR01350 158 ITSTGALN----L---------KEVPESLVIIGGGVIGIEFASIFAS--------------------LGS-KVTVIEMLD 203 (461)
T ss_pred EcchHHhc----c---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEEcCC
Confidence 44333221 0 0145899999999999999999986 565 699999988
Q ss_pred ccccC
Q 019876 214 PVQAA 218 (334)
Q Consensus 214 ~~~~~ 218 (334)
.+++.
T Consensus 204 ~~l~~ 208 (461)
T TIGR01350 204 RILPG 208 (461)
T ss_pred CCCCC
Confidence 76543
No 54
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.85 E-value=5.5e-20 Score=179.86 Aligned_cols=168 Identities=20% Similarity=0.285 Sum_probs=112.9
Q ss_pred CCCeEEEECCchHHHHHHHHHhhc-CCCCeEEEEcCC--------CCCccc-cccccCCCCcchh---------------
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRL--------PTPFGL-VRSGVAPDHPETK--------------- 72 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~-~~~~~v~vie~~--------~~~gg~-~~~~~~p~~~~~~--------------- 72 (334)
+.++|+|||+||+|+.||..+++. + .+|+|||+. ..+||. +++||.|.+.+..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g--~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~g 79 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYK--KRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFG 79 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcC--CEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccC
Confidence 457999999999999999999996 6 999999973 346664 4557766643211
Q ss_pred -------------HH-----------HHHHHHHhhc-CCcEEEeCeEE--c-eEEecc---------cceeccCeEEEec
Q 019876 73 -------------IV-----------INQFSRVVQH-ERCSFFGNVTL--G-SSVSLS---------ELRQLYHVVVLAY 115 (334)
Q Consensus 73 -------------~~-----------~~~~~~~~~~-~~i~~~~~~~v--~-~~v~~~---------~~~~~yd~lIlAT 115 (334)
.+ ...+.+.++. .+++++.+... + .++.+. ...+.||+|||||
T Consensus 80 i~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIAT 159 (486)
T TIGR01423 80 WEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLAT 159 (486)
T ss_pred eeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEec
Confidence 01 1112233444 48888876542 1 233332 1246899999999
Q ss_pred cCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHH
Q 019876 116 GAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAW 195 (334)
Q Consensus 116 Gs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~ 195 (334)
|+ .|..|++||.+. +++..+.+. . . ..+++++|||+|++|+|+|..+..
T Consensus 160 Gs-~p~~p~i~G~~~--~~~~~~~~~----~------~---~~~~~vvIIGgG~iG~E~A~~~~~--------------- 208 (486)
T TIGR01423 160 GS-WPQMLGIPGIEH--CISSNEAFY----L------D---EPPRRVLTVGGGFISVEFAGIFNA--------------- 208 (486)
T ss_pred CC-CCCCCCCCChhh--eechhhhhc----c------c---cCCCeEEEECCCHHHHHHHHHHHH---------------
Confidence 99 588899998652 333322211 0 0 146899999999999999987763
Q ss_pred HHHhcCCcceEEEEeecCccccCCCH
Q 019876 196 TALEGSSIRKVYLVGRRGPVQAACTA 221 (334)
Q Consensus 196 ~~~~~~~~~~Vtiv~r~~~~~~~~~~ 221 (334)
|...|. +|||+++.+.++..+++
T Consensus 209 --l~~~G~-~Vtli~~~~~il~~~d~ 231 (486)
T TIGR01423 209 --YKPRGG-KVTLCYRNNMILRGFDS 231 (486)
T ss_pred --hccCCC-eEEEEecCCccccccCH
Confidence 112354 79999999888755543
No 55
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.85 E-value=1.6e-20 Score=176.40 Aligned_cols=215 Identities=18% Similarity=0.204 Sum_probs=146.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC-CccccccccCCCCcchhHHHHHHHHHhhcCC-cEEEeCeEE
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGLVRSGVAPDHPETKIVINQFSRVVQHER-CSFFGNVTL 95 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~-~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~-i~~~~~~~v 95 (334)
.+++|||||||++|+.+|..|.+..++.+|++||++++ +.-.+.|.+..+.....++...+...+...+ ++|+.+...
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~ 81 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT 81 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence 46799999999999999999998733589999999875 3344444444454455677777888888555 999988765
Q ss_pred c-----eEEeccc-ceeccCeEEEeccCCCCCCCCCCCcc--C---CCccchhhHHHHhcCCCCCCC-CCCCCCCCCeEE
Q 019876 96 G-----SSVSLSE-LRQLYHVVVLAYGAESDRALGIPGED--L---IGVHSAREFVWWYNGHPDGKN-LSPDLKSTDTAV 163 (334)
Q Consensus 96 ~-----~~v~~~~-~~~~yd~lIlATGs~~p~~~~ipG~~--~---~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~k~vv 163 (334)
+ +.|.+++ ..++||+||||+|+ .+..+++||.. . +.+-.+..+...+....+... ...+ ..-.+++
T Consensus 82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs-~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~-~~~lti~ 159 (405)
T COG1252 82 DIDRDAKKVTLADLGEISYDYLVVALGS-ETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDD-RALLTIV 159 (405)
T ss_pred EEcccCCEEEeCCCccccccEEEEecCC-cCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccc-cceeEEE
Confidence 4 3566666 45799999999999 58888999954 1 222223232222211101000 0000 1224799
Q ss_pred EEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCH---HHHHHHHcCCceEEEEccC
Q 019876 164 ILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTA---KELREILGIKNLYVHIRED 240 (334)
Q Consensus 164 VIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~~~~~~ 240 (334)
|+|||++|+|+|.+|....+++..... .... --+|++|++.+++++.|++ +...+.|++.||+|+++..
T Consensus 160 IvGgG~TGVElAgeL~~~~~~l~~~~~-------~~~~-~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~ 231 (405)
T COG1252 160 IVGGGPTGVELAGELAERLHRLLKKFR-------VDPS-ELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTP 231 (405)
T ss_pred EECCChhHHHHHHHHHHHHHHHhhhhc-------CCcc-ccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCc
Confidence 999999999999999862221111000 0011 1269999999999999997 5677789999999999876
Q ss_pred cc
Q 019876 241 DL 242 (334)
Q Consensus 241 ~~ 242 (334)
.-
T Consensus 232 Vt 233 (405)
T COG1252 232 VT 233 (405)
T ss_pred eE
Confidence 53
No 56
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.85 E-value=2.4e-20 Score=181.00 Aligned_cols=165 Identities=19% Similarity=0.237 Sum_probs=119.9
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc--------------------------------
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------------------------------- 64 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~-------------------------------- 64 (334)
...++|+|||||+|||+||.+|++.| .+++|||+++.+||.|.+.-
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 34689999999999999999999997 99999999999999986520
Q ss_pred -----CCC-------------CcchhHHHHHHHHHhhcCCcE--EEeCeEEce--------EEeccc--c---eeccCeE
Q 019876 65 -----APD-------------HPETKIVINQFSRVVQHERCS--FFGNVTLGS--------SVSLSE--L---RQLYHVV 111 (334)
Q Consensus 65 -----~p~-------------~~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~--------~v~~~~--~---~~~yd~l 111 (334)
+|. |+...++.+++..+.+.+++. +++++.|.. .|+..+ . +..||+|
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence 111 223357888999999888877 667766521 122221 1 2369999
Q ss_pred EEeccCC-CCCCCCCCCcc-CCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCccccccc
Q 019876 112 VLAYGAE-SDRALGIPGED-LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTD 189 (334)
Q Consensus 112 IlATGs~-~p~~~~ipG~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~ 189 (334)
|+|||.+ .|+.|++||.+ .+|.... ..+++. .+..++|+|+|||+|++|+|+|..|+.
T Consensus 166 IvAtG~~~~P~~P~ipG~~~f~G~~iH---------s~~yr~--~~~~~gk~VvVVG~G~Sg~diA~~L~~--------- 225 (461)
T PLN02172 166 VVCNGHYTEPNVAHIPGIKSWPGKQIH---------SHNYRV--PDPFKNEVVVVIGNFASGADISRDIAK--------- 225 (461)
T ss_pred EEeccCCCCCcCCCCCCcccCCceEEE---------ecccCC--ccccCCCEEEEECCCcCHHHHHHHHHH---------
Confidence 9999963 48889999975 3442110 011111 122479999999999999999999995
Q ss_pred ccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 190 IASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 190 ~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
.+++|+++.|++..
T Consensus 226 ------------~a~~V~l~~r~~~~ 239 (461)
T PLN02172 226 ------------VAKEVHIASRASES 239 (461)
T ss_pred ------------hCCeEEEEEeeccc
Confidence 55789999998643
No 57
>PRK07846 mycothione reductase; Reviewed
Probab=99.85 E-value=1e-19 Score=176.84 Aligned_cols=162 Identities=14% Similarity=0.203 Sum_probs=112.5
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcch--------------------------hH
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET--------------------------KI 73 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~--------------------------~~ 73 (334)
++++|||+||+|+.||..+ .| .+|+|||++...|.|+++||.|.+.+. .+
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G--~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--AD--KRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPD 77 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CC--CeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHH
Confidence 6899999999999988653 45 999999997555556666887764211 11
Q ss_pred HHHH-------H-----HHH-hhcCCcEEEeCeEE---ceEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCccch
Q 019876 74 VINQ-------F-----SRV-VQHERCSFFGNVTL---GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136 (334)
Q Consensus 74 ~~~~-------~-----~~~-~~~~~i~~~~~~~v---~~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~ 136 (334)
+..+ + ... ++..+++++.+... .+.+.+.++ .+.||+||||||+ .|+.|++||.+...+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs-~p~~p~i~g~~~~~~~~~ 156 (451)
T PRK07846 78 IVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGS-RPVIPPVIADSGVRYHTS 156 (451)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCC-CCCCCCCCCcCCccEEch
Confidence 1111 1 111 44567887766543 234555544 4689999999999 589999999765455544
Q ss_pred hhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (334)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~ 216 (334)
.++.. +. ..+++++|||+|++|+|+|..|++ .|. +||+++|++.++
T Consensus 157 ~~~~~-l~------------~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G~-~Vtli~~~~~ll 202 (451)
T PRK07846 157 DTIMR-LP------------ELPESLVIVGGGFIAAEFAHVFSA--------------------LGV-RVTVVNRSGRLL 202 (451)
T ss_pred HHHhh-hh------------hcCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEEcCCccc
Confidence 43321 10 135899999999999999999986 565 699999998876
Q ss_pred cCCC
Q 019876 217 AACT 220 (334)
Q Consensus 217 ~~~~ 220 (334)
..++
T Consensus 203 ~~~d 206 (451)
T PRK07846 203 RHLD 206 (451)
T ss_pred cccC
Confidence 4443
No 58
>PRK13748 putative mercuric reductase; Provisional
Probab=99.85 E-value=1.1e-19 Score=181.68 Aligned_cols=163 Identities=23% Similarity=0.278 Sum_probs=109.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCCCCcc--------------------------
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPE-------------------------- 70 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p~~~~-------------------------- 70 (334)
..++|+||||||||++||..|++.| .+|+|||++ .+||.| +.||.|.+..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G--~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQG--ARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 3589999999999999999999997 999999997 667655 3366554311
Q ss_pred -hhHHHHH------------HHHHhhcC-CcEEEeCeEEc-----eEEecccc---eeccCeEEEeccCCCCCCCCCCCc
Q 019876 71 -TKIVINQ------------FSRVVQHE-RCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGE 128 (334)
Q Consensus 71 -~~~~~~~------------~~~~~~~~-~i~~~~~~~v~-----~~v~~~~~---~~~yd~lIlATGs~~p~~~~ipG~ 128 (334)
.+.+..+ +...+... +++++.+.... ..+...++ .+.||+||||||+ .|..|++||.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs-~p~~p~i~g~ 252 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGA-SPAVPPIPGL 252 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCC-CCCCCCCCCC
Confidence 1111111 11223333 68877664321 12333332 3689999999999 5888999997
Q ss_pred cCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEE
Q 019876 129 DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYL 208 (334)
Q Consensus 129 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vti 208 (334)
+...+++..+.+. . -..+++++|||+|++|+|+|..|++ .|. +|++
T Consensus 253 ~~~~~~~~~~~~~---~----------~~~~~~vvViGgG~ig~E~A~~l~~--------------------~g~-~Vtl 298 (561)
T PRK13748 253 KETPYWTSTEALV---S----------DTIPERLAVIGSSVVALELAQAFAR--------------------LGS-KVTI 298 (561)
T ss_pred CccceEccHHHhh---c----------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-EEEE
Confidence 6433333222111 0 0146899999999999999999986 565 6999
Q ss_pred EeecCccccCC
Q 019876 209 VGRRGPVQAAC 219 (334)
Q Consensus 209 v~r~~~~~~~~ 219 (334)
+.|.. ++..+
T Consensus 299 i~~~~-~l~~~ 308 (561)
T PRK13748 299 LARST-LFFRE 308 (561)
T ss_pred EecCc-ccccc
Confidence 99853 44333
No 59
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.84 E-value=5.5e-20 Score=178.30 Aligned_cols=188 Identities=16% Similarity=0.226 Sum_probs=124.9
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCC----c-chhHHHHH-HHHHhhcCCcEEEeC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH----P-ETKIVINQ-FSRVVQHERCSFFGN 92 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~----~-~~~~~~~~-~~~~~~~~~i~~~~~ 92 (334)
+++|||||||+||+.||..|++.+++.+|+|||+++..+ ....++ |.. . ...+.... ..+++++.+++++.+
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-~~~~~l-p~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~ 78 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-FANCAL-PYYIGEVVEDRKYALAYTPEKFYDRKQITVKTY 78 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-cccCCc-chhhcCccCCHHHcccCCHHHHHHhCCCEEEeC
Confidence 469999999999999999999987789999999987643 111111 111 0 11122211 234446678998876
Q ss_pred eEEc------eEEecccc------eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHH--hcCCCCCCCCCCCCCC
Q 019876 93 VTLG------SSVSLSEL------RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKS 158 (334)
Q Consensus 93 ~~v~------~~v~~~~~------~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~ 158 (334)
..|. +.+.+.+. ++.||+||||||+ .|+.|++++ +++++..++... +..... -..
T Consensus 79 ~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs-~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~-------~~~ 147 (438)
T PRK13512 79 HEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA-SANSLGFES---DITFTLRNLEDTDAIDQFIK-------ANQ 147 (438)
T ss_pred CEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCC-CCCCCCCCC---CCeEEecCHHHHHHHHHHHh-------hcC
Confidence 5542 23333221 2589999999999 577666543 345443322211 110000 014
Q ss_pred CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCH---HHHHHHHcCCceEE
Q 019876 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTA---KELREILGIKNLYV 235 (334)
Q Consensus 159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~ 235 (334)
+++++|||+|++|+|+|..|++ .|. +||+++++++++..+++ +.+.+.|+..||++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~--------------------~g~-~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i 206 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYE--------------------RGL-HPTLIHRSDKINKLMDADMNQPILDELDKREIPY 206 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEecccccchhcCHHHHHHHHHHHHhcCCEE
Confidence 6899999999999999999986 565 69999999888776665 56777888899999
Q ss_pred EEccC
Q 019876 236 HIRED 240 (334)
Q Consensus 236 ~~~~~ 240 (334)
+++..
T Consensus 207 ~~~~~ 211 (438)
T PRK13512 207 RLNEE 211 (438)
T ss_pred EECCe
Confidence 87643
No 60
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.84 E-value=1.8e-19 Score=178.11 Aligned_cols=201 Identities=21% Similarity=0.268 Sum_probs=141.1
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc--cc--CCC--CcchhHHHHHHHHHhhcCCcEEE
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--APD--HPETKIVINQFSRVVQHERCSFF 90 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~--~~--~p~--~~~~~~~~~~~~~~~~~~~i~~~ 90 (334)
...++|+||||||||++||.+|++.| ++++||++. +||.+.. ++ +++ +....++..++.++++..+++++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G--~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~ 284 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKG--IRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM 284 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 34689999999999999999999997 999999864 6776631 11 111 12345788888888888899998
Q ss_pred eCeEEce--------EEecccc-eeccCeEEEeccCCCCCCCCCCCcc---CCCccchhhHHHHhcCCCCCCCCCCCCCC
Q 019876 91 GNVTLGS--------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (334)
Q Consensus 91 ~~~~v~~--------~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
.++.+.. .+.+.++ .+.||+||+|||+ .|+.+++||.+ ..+++.+. .++ .....
T Consensus 285 ~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~-~~r~~~ipG~~~~~~~~v~~~~--------~~~-----~~~~~ 350 (517)
T PRK15317 285 NLQRASKLEPAAGLIEVELANGAVLKAKTVILATGA-RWRNMNVPGEDEYRNKGVAYCP--------HCD-----GPLFK 350 (517)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCC-CcCCCCCCCHHHhcCceEEEee--------ccC-----chhcC
Confidence 7765421 2233333 4689999999999 58888899863 12333221 111 11237
Q ss_pred CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEc
Q 019876 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (334)
Q Consensus 159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~ 238 (334)
+++|+|||+|++|+|+|..|+. .+ ++|+++++.+.+.. .
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~--------------------~~-~~Vtlv~~~~~l~~---~----------------- 389 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAG--------------------IV-KHVTVLEFAPELKA---D----------------- 389 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--------------------cC-CEEEEEEECccccc---c-----------------
Confidence 8999999999999999999985 34 57999998875420 0
Q ss_pred cCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (334)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~ 311 (334)
+.+++.+. ...||++++++.+++|. + +++++++|.+.+
T Consensus 390 ------------------------~~l~~~l~--------~~~gI~i~~~~~v~~i~--~-~~g~v~~v~~~~ 427 (517)
T PRK15317 390 ------------------------QVLQDKLR--------SLPNVTIITNAQTTEVT--G-DGDKVTGLTYKD 427 (517)
T ss_pred ------------------------HHHHHHHh--------cCCCcEEEECcEEEEEE--c-CCCcEEEEEEEE
Confidence 01122221 24689999999999998 5 347888888764
No 61
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.84 E-value=2.6e-20 Score=174.26 Aligned_cols=215 Identities=17% Similarity=0.236 Sum_probs=158.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC-CccccccccCCCCcc--hhHHHHHHHHHhhcCCcEEEeCeE
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGLVRSGVAPDHPE--TKIVINQFSRVVQHERCSFFGNVT 94 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~-~gg~~~~~~~p~~~~--~~~~~~~~~~~~~~~~i~~~~~~~ 94 (334)
..+.++|||+|++|..|+.++++.++..+++++-++.. ++...+ .|.+.. .+.+..+..+++++.+|+++.++.
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~---Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~ 149 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRAR---LSKFLLTVGEGLAKRTPEFYKEKGIELILGTS 149 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchh---cccceeeccccccccChhhHhhcCceEEEcce
Confidence 46799999999999999999999998889999986543 222211 122211 224455566788999999999987
Q ss_pred Ec------eEEecccce-eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcC
Q 019876 95 LG------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (334)
Q Consensus 95 v~------~~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~ 167 (334)
+. +++...+++ .+|++++||||+ +++.|++||.+.+++++.++.... ..+...+..+.+|+++|+
T Consensus 150 v~~~D~~~K~l~~~~Ge~~kys~LilATGs-~~~~l~~pG~~~~nv~~ireieda-------~~l~~~~~~~~~vV~vG~ 221 (478)
T KOG1336|consen 150 VVKADLASKTLVLGNGETLKYSKLIIATGS-SAKTLDIPGVELKNVFYLREIEDA-------NRLVAAIQLGGKVVCVGG 221 (478)
T ss_pred eEEeeccccEEEeCCCceeecceEEEeecC-ccccCCCCCccccceeeeccHHHH-------HHHHHHhccCceEEEECc
Confidence 63 344454444 589999999999 699999999999999888766532 111222335789999999
Q ss_pred CHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCC
Q 019876 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247 (334)
Q Consensus 168 G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~ 247 (334)
|++|+|+|..|.. ..++||+|++.+..+.++....+++
T Consensus 222 G~ig~Evaa~l~~---------------------~~~~VT~V~~e~~~~~~lf~~~i~~--------------------- 259 (478)
T KOG1336|consen 222 GFIGMEVAAALVS---------------------KAKSVTVVFPEPWLLPRLFGPSIGQ--------------------- 259 (478)
T ss_pred hHHHHHHHHHHHh---------------------cCceEEEEccCccchhhhhhHHHHH---------------------
Confidence 9999999999995 5678999999987764433222221
Q ss_pred chhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEe
Q 019876 248 DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT 312 (334)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~ 312 (334)
.+.+.+ .++||+|++++.+.++. ++.+|++..|.+.+.
T Consensus 260 ----------------~~~~y~---------e~kgVk~~~~t~~s~l~--~~~~Gev~~V~l~dg 297 (478)
T KOG1336|consen 260 ----------------FYEDYY---------ENKGVKFYLGTVVSSLE--GNSDGEVSEVKLKDG 297 (478)
T ss_pred ----------------HHHHHH---------HhcCeEEEEecceeecc--cCCCCcEEEEEeccC
Confidence 122222 37899999999999998 655689999999875
No 62
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.84 E-value=1.9e-19 Score=177.77 Aligned_cols=201 Identities=21% Similarity=0.285 Sum_probs=139.3
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc--cc--CCC--CcchhHHHHHHHHHhhcCCcEEE
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--APD--HPETKIVINQFSRVVQHERCSFF 90 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~--~~--~p~--~~~~~~~~~~~~~~~~~~~i~~~ 90 (334)
...++|+||||||||++||.+|++.+ .+|+||+. .+||.+.. ++ .+. +....++...+.++++..+++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G--~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~ 285 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKG--LRTAMVAE--RIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLM 285 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEec--CCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 35689999999999999999999987 99999975 46776532 11 011 12345677788888888899998
Q ss_pred eCeEEc--------eEEecccc-eeccCeEEEeccCCCCCCCCCCCcc---CCCccchhhHHHHhcCCCCCCCCCCCCCC
Q 019876 91 GNVTLG--------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (334)
Q Consensus 91 ~~~~v~--------~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
.+..+. ..+.+.++ .+.||+||+|||+ .|+.+++||.+ ..+++.+. .++ ..+..
T Consensus 286 ~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa-~~~~~~ipG~~~~~~~~v~~~~--------~~~-----~~~~~ 351 (515)
T TIGR03140 286 ENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGA-RWRKLGVPGEKEYIGKGVAYCP--------HCD-----GPFFK 351 (515)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC-CcCCCCCCCHHHcCCCeEEEee--------ccC-----hhhcC
Confidence 876542 12333333 3689999999999 48888999853 12332221 111 11236
Q ss_pred CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEc
Q 019876 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (334)
Q Consensus 159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~ 238 (334)
+++|+|||||++|+|+|..|+. .+ ++||++++.+.+.. .+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~--------------------~g-~~Vtli~~~~~l~~---~~---------------- 391 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAG--------------------IV-RHVTVLEFADELKA---DK---------------- 391 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHh--------------------cC-cEEEEEEeCCcCCh---hH----------------
Confidence 8999999999999999999985 44 57999998765420 00
Q ss_pred cCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (334)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~ 311 (334)
.+.+.+. ...||+|++++.+++|. + +++++++|.+.+
T Consensus 392 -------------------------~l~~~l~--------~~~gV~i~~~~~v~~i~--~-~~~~v~~v~~~~ 428 (515)
T TIGR03140 392 -------------------------VLQDKLK--------SLPNVDILTSAQTTEIV--G-DGDKVTGIRYQD 428 (515)
T ss_pred -------------------------HHHHHHh--------cCCCCEEEECCeeEEEE--c-CCCEEEEEEEEE
Confidence 1122221 13589999999999997 6 346788887764
No 63
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.84 E-value=3.2e-20 Score=161.13 Aligned_cols=156 Identities=25% Similarity=0.323 Sum_probs=101.1
Q ss_pred EEECCchHHHHHHHHHhhcCCCCe-EEEEcCCCCCcccccc-c----c-CCC---------------------------C
Q 019876 23 CVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRS-G----V-APD---------------------------H 68 (334)
Q Consensus 23 vIIGaG~aGl~aA~~l~~~~~~~~-v~vie~~~~~gg~~~~-~----~-~p~---------------------------~ 68 (334)
+||||||+|+++|.+|.+.+ .+ ++|||+++.+||.|.. . + .|. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCC--CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 69999999999999999997 77 9999999999987742 0 0 111 1
Q ss_pred cchhHHHHHHHHHhhcCCcEEEeCeEEce--------EEecccc-eeccCeEEEeccCC-CCCCCCCCC-ccCCCccchh
Q 019876 69 PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE-SDRALGIPG-EDLIGVHSAR 137 (334)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~v~~~~~-~~~yd~lIlATGs~-~p~~~~ipG-~~~~~v~~~~ 137 (334)
...+++.+++..+.+++++++++++.|.. .+++.+. .+.+|+||+|||.. .|+.|.+|| .+. .+++..
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~-~~~h~~ 157 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR-PIIHSA 157 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS-EEEEGG
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc-ceEehh
Confidence 12235678888888889999888877632 3555555 56899999999973 488889999 433 333332
Q ss_pred hHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (334)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~ 214 (334)
++. ... -.++++|+|||+|++|+|+|..|++ .+ ++|+++.|++.
T Consensus 158 ~~~----~~~--------~~~~k~V~VVG~G~SA~d~a~~l~~--------------------~g-~~V~~~~R~~~ 201 (203)
T PF13738_consen 158 DWR----DPE--------DFKGKRVVVVGGGNSAVDIAYALAK--------------------AG-KSVTLVTRSPI 201 (203)
T ss_dssp G-S----TTG--------GCTTSEEEEE--SHHHHHHHHHHTT--------------------TC-SEEEEEESS--
T ss_pred hcC----Chh--------hcCCCcEEEEcChHHHHHHHHHHHh--------------------hC-CEEEEEecCCC
Confidence 221 111 1267999999999999999999996 55 68999999864
No 64
>PRK14727 putative mercuric reductase; Provisional
Probab=99.84 E-value=2.5e-19 Score=175.59 Aligned_cols=164 Identities=19% Similarity=0.241 Sum_probs=109.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCcc--------------------------
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPE-------------------------- 70 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~~-------------------------- 70 (334)
.+++++|||+||+|+++|..|++.+ .+|+|+|+.+.+||.|.+ ||.|.+.+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g--~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 92 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHG--ARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSID 92 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccC
Confidence 4589999999999999999999997 899999998777876644 66554311
Q ss_pred hhHHH-------HH-----HHHHhhcC-CcEEEeCeEE--c-e--EEecccc---eeccCeEEEeccCCCCCCCCCCCcc
Q 019876 71 TKIVI-------NQ-----FSRVVQHE-RCSFFGNVTL--G-S--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGED 129 (334)
Q Consensus 71 ~~~~~-------~~-----~~~~~~~~-~i~~~~~~~v--~-~--~v~~~~~---~~~yd~lIlATGs~~p~~~~ipG~~ 129 (334)
...+. .+ +...++.. +++++.+... + . .+...++ ++.||+||||||+ .|+.|++||.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~p~i~G~~ 171 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGS-TPTIPPIPGLM 171 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCC-CCCCCCCCCcC
Confidence 00111 11 12223322 6777655432 1 1 2333332 4689999999999 59999999975
Q ss_pred CCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEE
Q 019876 130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV 209 (334)
Q Consensus 130 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv 209 (334)
...+++..+.+ .. -..+++++|||+|++|+|+|..|.+ .|. +||++
T Consensus 172 ~~~~~~~~~~l---~~----------~~~~k~vvVIGgG~iG~E~A~~l~~--------------------~G~-~Vtlv 217 (479)
T PRK14727 172 DTPYWTSTEAL---FS----------DELPASLTVIGSSVVAAEIAQAYAR--------------------LGS-RVTIL 217 (479)
T ss_pred ccceecchHHh---cc----------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-EEEEE
Confidence 43333322211 00 0145899999999999999999986 565 69999
Q ss_pred eecCccccCC
Q 019876 210 GRRGPVQAAC 219 (334)
Q Consensus 210 ~r~~~~~~~~ 219 (334)
++. .++..+
T Consensus 218 ~~~-~~l~~~ 226 (479)
T PRK14727 218 ARS-TLLFRE 226 (479)
T ss_pred EcC-CCCCcc
Confidence 875 444333
No 65
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.84 E-value=2.3e-19 Score=188.92 Aligned_cols=201 Identities=24% Similarity=0.204 Sum_probs=142.7
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc--CCCCcchhHHHHHHHHHhhcC-CcEEEeCeEE
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV--APDHPETKIVINQFSRVVQHE-RCSFFGNVTL 95 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~--~p~~~~~~~~~~~~~~~~~~~-~i~~~~~~~v 95 (334)
.++|+|||||||||+||.++++.+ .+|+|||+.+.+||.+.+.. .++. ...++...+.+.+... +++++.++.+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G--~~V~liD~~~~~GG~~~~~~~~~~g~-~~~~~~~~~~~~l~~~~~v~v~~~t~V 239 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAG--ARVILVDEQPEAGGSLLSEAETIDGK-PAADWAAATVAELTAMPEVTLLPRTTA 239 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCCCeeeccccccCCc-cHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence 578999999999999999999987 99999999999998876421 1221 2234434454555544 5888876544
Q ss_pred ce-----------EEe----------cccc--eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCC
Q 019876 96 GS-----------SVS----------LSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNL 152 (334)
Q Consensus 96 ~~-----------~v~----------~~~~--~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~ 152 (334)
.. ... ..+. .+.||+||||||+ .++.|++||.+.++|++.......+...
T Consensus 240 ~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa-~~r~~pipG~~~pgV~~~~~~~~~l~~~------ 312 (985)
T TIGR01372 240 FGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGA-HERPLVFANNDRPGVMLAGAARTYLNRY------ 312 (985)
T ss_pred EEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCC-CCcCCCCCCCCCCCcEEchHHHHHHHhh------
Confidence 11 000 0011 3579999999999 5899999999999999875544332211
Q ss_pred CCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCc
Q 019876 153 SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKN 232 (334)
Q Consensus 153 ~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~g 232 (334)
....+++|+|||+|++|+|+|..|++ .|.+.|+|+++++.+. ..
T Consensus 313 --~~~~gk~VvViG~G~~g~e~A~~L~~--------------------~G~~vV~vv~~~~~~~-----~~--------- 356 (985)
T TIGR01372 313 --GVAPGKRIVVATNNDSAYRAAADLLA--------------------AGIAVVAIIDARADVS-----PE--------- 356 (985)
T ss_pred --CcCCCCeEEEECCCHHHHHHHHHHHH--------------------cCCceEEEEccCcchh-----HH---------
Confidence 12368999999999999999999986 6777799998765331 00
Q ss_pred eEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEE
Q 019876 233 LYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE 310 (334)
Q Consensus 233 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~ 310 (334)
+.+.+ ++.||++++++.+++|. + ++++++|++.
T Consensus 357 --------------------------------l~~~L---------~~~GV~i~~~~~v~~i~--g--~~~v~~V~l~ 389 (985)
T TIGR01372 357 --------------------------------ARAEA---------RELGIEVLTGHVVAATE--G--GKRVSGVAVA 389 (985)
T ss_pred --------------------------------HHHHH---------HHcCCEEEcCCeEEEEe--c--CCcEEEEEEE
Confidence 11111 25689999999999998 6 5678888876
No 66
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.83 E-value=2e-19 Score=175.78 Aligned_cols=163 Identities=17% Similarity=0.281 Sum_probs=106.1
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchh--HHHHHHHH----------------
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETK--IVINQFSR---------------- 80 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~--~~~~~~~~---------------- 80 (334)
.++|+||||||||++||.+|++.+ .+|+|||++...|.+...||.|.+.... ++...+..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G--~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLG--LKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHH
Confidence 479999999999999999999997 9999999875445555668878653321 11111111
Q ss_pred -------------------HhhcCCcEEEeCeE--Ec-eEEec--ccc---eeccCeEEEeccCCCCCCCCCCCccC-CC
Q 019876 81 -------------------VVQHERCSFFGNVT--LG-SSVSL--SEL---RQLYHVVVLAYGAESDRALGIPGEDL-IG 132 (334)
Q Consensus 81 -------------------~~~~~~i~~~~~~~--v~-~~v~~--~~~---~~~yd~lIlATGs~~p~~~~ipG~~~-~~ 132 (334)
.++..+++.+.+.. ++ ..+.+ .++ .+.||+||||||+ .|+.+ ||.+. ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~~--pg~~~~~~ 158 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGS-STRLL--PGTSLSEN 158 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCC-CCCCC--CCCCCCCc
Confidence 11223455544321 11 12222 222 4689999999999 47653 56542 23
Q ss_pred ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (334)
Q Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~ 212 (334)
+++..+.. . . -..+++|+|||+|++|+|+|..|++ .|. +|+++++.
T Consensus 159 v~~~~~~~---~-~---------~~~~~~vvVIGgG~ig~E~A~~l~~--------------------~G~-~Vtlv~~~ 204 (466)
T PRK07818 159 VVTYEEQI---L-S---------RELPKSIVIAGAGAIGMEFAYVLKN--------------------YGV-DVTIVEFL 204 (466)
T ss_pred EEchHHHh---c-c---------ccCCCeEEEECCcHHHHHHHHHHHH--------------------cCC-eEEEEecC
Confidence 44433211 0 0 0146899999999999999999986 565 69999999
Q ss_pred CccccCCC
Q 019876 213 GPVQAACT 220 (334)
Q Consensus 213 ~~~~~~~~ 220 (334)
+++++.++
T Consensus 205 ~~~l~~~d 212 (466)
T PRK07818 205 DRALPNED 212 (466)
T ss_pred CCcCCccC
Confidence 87765543
No 67
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.83 E-value=7.4e-19 Score=171.53 Aligned_cols=160 Identities=21% Similarity=0.285 Sum_probs=106.8
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc-cccCCCCc--------------------------ch
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDHP--------------------------ET 71 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~-~~~~p~~~--------------------------~~ 71 (334)
.++|+||||||+|++||.+|.+.+ .+|+|||+ +.+||.+. .||.|.+. ..
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g--~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~ 79 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLG--KKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDF 79 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCC--CeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCH
Confidence 479999999999999999999987 99999999 56777553 35544321 11
Q ss_pred hHHHHHHH------------HHhhcCCcEEEeCeEE---ceEEecccceeccCeEEEeccCCCCCCCCCCCcc---CCCc
Q 019876 72 KIVINQFS------------RVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGV 133 (334)
Q Consensus 72 ~~~~~~~~------------~~~~~~~i~~~~~~~v---~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~---~~~v 133 (334)
+++..+.. ..++..+++++.+... ...+.++...+.||+||||||+ . .|++||.+ ...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATGs-~--~p~ipg~~~~~~~~~ 156 (460)
T PRK06292 80 KKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGS-R--VPPIPGVWLILGDRL 156 (460)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCCC-C--CCCCCCCcccCCCcE
Confidence 22222221 1233446776654321 1233443345789999999999 4 45677753 2334
Q ss_pred cchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (334)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~ 213 (334)
++..+... . -..+++++|||+|.+|+|+|..|.+ .|. +|++++|.+
T Consensus 157 ~~~~~~~~----~---------~~~~k~v~VIGgG~~g~E~A~~l~~--------------------~g~-~Vtli~~~~ 202 (460)
T PRK06292 157 LTSDDAFE----L---------DKLPKSLAVIGGGVIGLELGQALSR--------------------LGV-KVTVFERGD 202 (460)
T ss_pred ECchHHhC----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEecCC
Confidence 44332221 1 0246899999999999999999986 675 599999998
Q ss_pred ccccC
Q 019876 214 PVQAA 218 (334)
Q Consensus 214 ~~~~~ 218 (334)
.++..
T Consensus 203 ~~l~~ 207 (460)
T PRK06292 203 RILPL 207 (460)
T ss_pred CcCcc
Confidence 77543
No 68
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.83 E-value=4.7e-20 Score=181.38 Aligned_cols=161 Identities=27% Similarity=0.390 Sum_probs=109.3
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc---------c-----------------------CCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG---------V-----------------------APD 67 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~---------~-----------------------~p~ 67 (334)
++|+|||||++||++|..|++.| +++++||+++.+||.|.+. + .|.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g--~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~ 79 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG--LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPD 79 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT---EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSS
T ss_pred CEEEEECccHHHHHHHHHHHHCC--CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCC
Confidence 69999999999999999999997 9999999999999999641 1 123
Q ss_pred CcchhHHHHHHHHHhhcCCc--EEEeCeEEce-------------EEecc-cc---eeccCeEEEeccCCC-CCCCC--C
Q 019876 68 HPETKIVINQFSRVVQHERC--SFFGNVTLGS-------------SVSLS-EL---RQLYHVVVLAYGAES-DRALG--I 125 (334)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~-------------~v~~~-~~---~~~yd~lIlATGs~~-p~~~~--i 125 (334)
++...++.+|+..+.+++++ .+++++.|.. .|+.. ++ +..||+||+|||.+. |+.|. +
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~ 159 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF 159 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence 34456889999999988876 3666766521 12221 12 136999999999854 77663 8
Q ss_pred CCcc-CCC-ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCc
Q 019876 126 PGED-LIG-VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI 203 (334)
Q Consensus 126 pG~~-~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (334)
||.+ .+| ++++.+|. .. ...++|+|+|||+|++|+|+|..|+. -+
T Consensus 160 ~G~e~F~G~i~HS~~yr----~~--------~~f~gKrVlVVG~g~Sg~DIa~el~~---------------------~a 206 (531)
T PF00743_consen 160 PGLEKFKGEIIHSKDYR----DP--------EPFKGKRVLVVGGGNSGADIAVELSR---------------------VA 206 (531)
T ss_dssp CTGGGHCSEEEEGGG------TG--------GGGTTSEEEEESSSHHHHHHHHHHTT---------------------TS
T ss_pred hhhhcCCeeEEccccCc----Ch--------hhcCCCEEEEEeCCHhHHHHHHHHHH---------------------hc
Confidence 8875 233 33333332 11 12389999999999999999999996 56
Q ss_pred ceEEEEeecCcc
Q 019876 204 RKVYLVGRRGPV 215 (334)
Q Consensus 204 ~~Vtiv~r~~~~ 215 (334)
++|++..|++.+
T Consensus 207 ~~v~~s~R~~~w 218 (531)
T PF00743_consen 207 KKVYLSTRRGAW 218 (531)
T ss_dssp CCEEEECC----
T ss_pred CCeEEEEecccc
Confidence 679999998654
No 69
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.82 E-value=1e-18 Score=171.16 Aligned_cols=163 Identities=17% Similarity=0.253 Sum_probs=109.7
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC--------CCccc-cccccCCCCcchh-----------------
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGL-VRSGVAPDHPETK----------------- 72 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~--------~~gg~-~~~~~~p~~~~~~----------------- 72 (334)
.++|+|||+||+|+.||..+++.+ .+|++||+.. ..||. ++.||.|.+.+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G--~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~ 79 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYG--AKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWN 79 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcc
Confidence 369999999999999999999997 9999999731 35665 4557877543211
Q ss_pred ----------HH-----------HHHHHHHhhcCCcEEEeCeEE--c-eEEecc--c---ceeccCeEEEeccCCCCCCC
Q 019876 73 ----------IV-----------INQFSRVVQHERCSFFGNVTL--G-SSVSLS--E---LRQLYHVVVLAYGAESDRAL 123 (334)
Q Consensus 73 ----------~~-----------~~~~~~~~~~~~i~~~~~~~v--~-~~v~~~--~---~~~~yd~lIlATGs~~p~~~ 123 (334)
.+ ...+...++..+++++.+... + ..+.+. + ..+.||+||||||+ .|+.|
T Consensus 80 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs-~p~~p 158 (484)
T TIGR01438 80 VEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGE-RPRYP 158 (484)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCC-CCCCC
Confidence 00 111223455667887766442 1 223322 2 24689999999999 68889
Q ss_pred CCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCc
Q 019876 124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI 203 (334)
Q Consensus 124 ~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (334)
++||.+.. .++..++.. .. ...++++|||+|++|+|+|..|++ .|.
T Consensus 159 ~ipG~~~~-~~~~~~~~~----~~---------~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G~ 204 (484)
T TIGR01438 159 GIPGAKEL-CITSDDLFS----LP---------YCPGKTLVVGASYVALECAGFLAG--------------------IGL 204 (484)
T ss_pred CCCCccce-eecHHHhhc----cc---------ccCCCEEEECCCHHHHHHHHHHHH--------------------hCC
Confidence 99987422 233322221 11 135789999999999999999986 565
Q ss_pred ceEEEEeecCccccCCC
Q 019876 204 RKVYLVGRRGPVQAACT 220 (334)
Q Consensus 204 ~~Vtiv~r~~~~~~~~~ 220 (334)
+||++.| +.++..++
T Consensus 205 -~Vtli~~-~~~l~~~d 219 (484)
T TIGR01438 205 -DVTVMVR-SILLRGFD 219 (484)
T ss_pred -cEEEEEe-cccccccC
Confidence 6999987 45554444
No 70
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.82 E-value=1e-18 Score=171.12 Aligned_cols=165 Identities=17% Similarity=0.240 Sum_probs=107.4
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcC------CCCCcccc-ccccCCCCcchh-------------------
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR------LPTPFGLV-RSGVAPDHPETK------------------- 72 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~------~~~~gg~~-~~~~~p~~~~~~------------------- 72 (334)
.++++|||+||||++||.++++.+ .+|+|+|+ ...+||.+ +++|.|.+....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g--~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLG--LKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCC--CeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 579999999999999999999997 99999998 23456654 446655421100
Q ss_pred --------HHH-----------HHHHHHhhcCCcEEEeCeEE--c-----eEEecc--c-ceeccCeEEEeccCCCCCCC
Q 019876 73 --------IVI-----------NQFSRVVQHERCSFFGNVTL--G-----SSVSLS--E-LRQLYHVVVLAYGAESDRAL 123 (334)
Q Consensus 73 --------~~~-----------~~~~~~~~~~~i~~~~~~~v--~-----~~v~~~--~-~~~~yd~lIlATGs~~p~~~ 123 (334)
.+. ..+...++..+++++.+... + ..+.+. + ..+.||+||||||+ .|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs-~p~~~ 160 (475)
T PRK06327 82 DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGS-EPRHL 160 (475)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCC-CCCCC
Confidence 001 11223344567887765432 1 234332 1 25689999999999 47654
Q ss_pred CCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCc
Q 019876 124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI 203 (334)
Q Consensus 124 ~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (334)
+..+.+...++++..... . -..+++|+|||+|++|+|+|..|++ .+.
T Consensus 161 p~~~~~~~~~~~~~~~~~----~---------~~~~~~vvVvGgG~~g~E~A~~l~~--------------------~g~ 207 (475)
T PRK06327 161 PGVPFDNKIILDNTGALN----F---------TEVPKKLAVIGAGVIGLELGSVWRR--------------------LGA 207 (475)
T ss_pred CCCCCCCceEECcHHHhc----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cCC
Confidence 322222333444332221 1 0146899999999999999999986 565
Q ss_pred ceEEEEeecCccccCCC
Q 019876 204 RKVYLVGRRGPVQAACT 220 (334)
Q Consensus 204 ~~Vtiv~r~~~~~~~~~ 220 (334)
+||++++++.++..++
T Consensus 208 -~Vtli~~~~~~l~~~d 223 (475)
T PRK06327 208 -EVTILEALPAFLAAAD 223 (475)
T ss_pred -eEEEEeCCCccCCcCC
Confidence 6999999987754443
No 71
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.82 E-value=1.4e-19 Score=176.64 Aligned_cols=215 Identities=20% Similarity=0.275 Sum_probs=159.2
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCC-CCeEEEEcCCCCC-ccccc-cccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTP-FGLVR-SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~-~~~v~vie~~~~~-gg~~~-~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 95 (334)
.+++||||.|++|..+...++...| .++|++|..++++ +..+. ..+.++....+++...-.+|+++++|+++.+..+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 5799999999999999999988544 4899999988775 22211 1234554455666666678899999999998776
Q ss_pred c------eEEecccce-eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCC
Q 019876 96 G------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQG 168 (334)
Q Consensus 96 ~------~~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G 168 (334)
. +.|..+.+. ..||+||+|||| .|+.+|+||.+.++++..+++...+. ..++ -...++.+|||||
T Consensus 83 ~~idr~~k~V~t~~g~~~~YDkLilATGS-~pfi~PiPG~~~~~v~~~R~i~D~~a-m~~~------ar~~~~avVIGGG 154 (793)
T COG1251 83 IQIDRANKVVTTDAGRTVSYDKLIIATGS-YPFILPIPGSDLPGVFVYRTIDDVEA-MLDC------ARNKKKAVVIGGG 154 (793)
T ss_pred EEeccCcceEEccCCcEeecceeEEecCc-cccccCCCCCCCCCeeEEecHHHHHH-HHHH------HhccCCcEEEccc
Confidence 2 345555444 589999999999 59999999999999998887764322 1111 1245668999999
Q ss_pred HHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCc
Q 019876 169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTD 248 (334)
Q Consensus 169 ~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~ 248 (334)
..|+|+|..|.+ .|. +|++++-.+.++. .+
T Consensus 155 LLGlEaA~~L~~--------------------~Gm-~~~Vvh~~~~lMe-----------------------------rQ 184 (793)
T COG1251 155 LLGLEAARGLKD--------------------LGM-EVTVVHIAPTLME-----------------------------RQ 184 (793)
T ss_pred hhhhHHHHHHHh--------------------CCC-ceEEEeecchHHH-----------------------------Hh
Confidence 999999999996 676 5999998887631 11
Q ss_pred hhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEe
Q 019876 249 EEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT 312 (334)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~ 312 (334)
++.. -.++|+..+ .+.||+|++++.+++|. + ++++++|+|++.
T Consensus 185 LD~~--------ag~lL~~~l---------e~~Gi~~~l~~~t~ei~--g--~~~~~~vr~~DG 227 (793)
T COG1251 185 LDRT--------AGRLLRRKL---------EDLGIKVLLEKNTEEIV--G--EDKVEGVRFADG 227 (793)
T ss_pred hhhH--------HHHHHHHHH---------Hhhcceeecccchhhhh--c--CcceeeEeecCC
Confidence 1111 123444443 37899999999999998 7 789999999875
No 72
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.82 E-value=1.3e-18 Score=174.60 Aligned_cols=165 Identities=14% Similarity=0.107 Sum_probs=111.8
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC-CCCccc-cccccCCCCcchh------------------------
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-PTPFGL-VRSGVAPDHPETK------------------------ 72 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~-~~~gg~-~~~~~~p~~~~~~------------------------ 72 (334)
.++|+|||+||+|+.||..+++.| .+|+|||+. +.+||. ++.||.|.+.+..
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G--~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~ 193 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERG--LKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAF 193 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccc
Confidence 579999999999999999999997 999999974 345654 4557777643211
Q ss_pred -----------------------HHHH-----------HHHHHhhcCC-------cEEEeCeEE--c-eEEec--cccee
Q 019876 73 -----------------------IVIN-----------QFSRVVQHER-------CSFFGNVTL--G-SSVSL--SELRQ 106 (334)
Q Consensus 73 -----------------------~~~~-----------~~~~~~~~~~-------i~~~~~~~v--~-~~v~~--~~~~~ 106 (334)
.+.. .+...++..+ ++++.+... + .++.+ ...++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i 273 (659)
T PTZ00153 194 KNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEF 273 (659)
T ss_pred cccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEE
Confidence 0000 0112222222 455444321 1 12322 22346
Q ss_pred ccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccc
Q 019876 107 LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELA 186 (334)
Q Consensus 107 ~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~ 186 (334)
.||+||||||+ .|..|++++.+.++++++.+... +. ..+++|+|||+|++|+|+|..|+.
T Consensus 274 ~ad~lIIATGS-~P~~P~~~~~~~~~V~ts~d~~~-l~------------~lpk~VvIVGgG~iGvE~A~~l~~------ 333 (659)
T PTZ00153 274 KVKNIIIATGS-TPNIPDNIEVDQKSVFTSDTAVK-LE------------GLQNYMGIVGMGIIGLEFMDIYTA------ 333 (659)
T ss_pred ECCEEEEcCCC-CCCCCCCCCCCCCcEEehHHhhh-hh------------hcCCceEEECCCHHHHHHHHHHHh------
Confidence 89999999999 58887777766667877655432 11 136899999999999999999886
Q ss_pred cccccHHHHHHHhcCCcceEEEEeecCccccCCC
Q 019876 187 TTDIASYAWTALEGSSIRKVYLVGRRGPVQAACT 220 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~ 220 (334)
.|. +||++++.+.++..++
T Consensus 334 --------------~G~-eVTLIe~~~~ll~~~d 352 (659)
T PTZ00153 334 --------------LGS-EVVSFEYSPQLLPLLD 352 (659)
T ss_pred --------------CCC-eEEEEeccCcccccCC
Confidence 565 6999999988765443
No 73
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.82 E-value=1.6e-18 Score=170.42 Aligned_cols=181 Identities=14% Similarity=0.206 Sum_probs=113.4
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC--------CCccc-cccccCCCCcc-------------------
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGL-VRSGVAPDHPE------------------- 70 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~--------~~gg~-~~~~~~p~~~~------------------- 70 (334)
.++|+||||||||++||.++.+.+ .+|+|+|+.. .+||. ++.||.|.+..
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G--~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~ 82 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHG--KKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGW 82 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCC--CeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCC
Confidence 479999999999999999999997 9999999631 35665 45577775311
Q ss_pred -------hhHHHHHHHHH-----------hhcCCcEEEeCeEE---ceEEeccc----ceeccCeEEEeccCCCCCCC-C
Q 019876 71 -------TKIVINQFSRV-----------VQHERCSFFGNVTL---GSSVSLSE----LRQLYHVVVLAYGAESDRAL-G 124 (334)
Q Consensus 71 -------~~~~~~~~~~~-----------~~~~~i~~~~~~~v---~~~v~~~~----~~~~yd~lIlATGs~~p~~~-~ 124 (334)
..++.+++... ++..+|+++.+... .+.+.+.+ ..+.||+||||||+ .|+.| +
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs-~p~~p~~ 161 (499)
T PTZ00052 83 KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGG-RPSIPED 161 (499)
T ss_pred CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCC-CCCCCCC
Confidence 11222222222 22346666554322 12333321 24689999999999 57766 4
Q ss_pred CCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcc
Q 019876 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (334)
Q Consensus 125 ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (334)
+||.+.. .++..++.. . ...+++++|||+|++|+|+|..|++ .|.
T Consensus 162 i~G~~~~-~~~~~~~~~----~---------~~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G~- 206 (499)
T PTZ00052 162 VPGAKEY-SITSDDIFS----L---------SKDPGKTLIVGASYIGLETAGFLNE--------------------LGF- 206 (499)
T ss_pred CCCccce-eecHHHHhh----h---------hcCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-
Confidence 8886532 233333221 0 0135799999999999999999996 675
Q ss_pred eEEEEeecCccccCCCH---HHHHHHHcCCceEEEEc
Q 019876 205 KVYLVGRRGPVQAACTA---KELREILGIKNLYVHIR 238 (334)
Q Consensus 205 ~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~~~~ 238 (334)
+||++.+. .++..+++ +.+.+.|+..||+++++
T Consensus 207 ~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV~i~~~ 242 (499)
T PTZ00052 207 DVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGTLFLEG 242 (499)
T ss_pred cEEEEEcC-cccccCCHHHHHHHHHHHHHcCCEEEcC
Confidence 59999874 44444443 23333333444444433
No 74
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.82 E-value=2.4e-19 Score=169.81 Aligned_cols=199 Identities=16% Similarity=0.230 Sum_probs=129.1
Q ss_pred eEEEECCchHHHHHHHHHhhc-CCCCeEEEEcCCCCC-ccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc--
Q 019876 21 RVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-- 96 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~-~~~~~v~vie~~~~~-gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-- 96 (334)
+|||||||+||+.+|..|+++ .++.+|+|||+++.. +.........+.....++...+.++++..+++|+.+..+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id 80 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID 80 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence 589999999999999999755 457999999998753 1111111111222334565566777778899998875543
Q ss_pred ---eEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCccchhh---HHHHhcCCCCCCCCCCCCCCCCeEEEEcCCH
Q 019876 97 ---SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSARE---FVWWYNGHPDGKNLSPDLKSTDTAVILGQGN 169 (334)
Q Consensus 97 ---~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~ 169 (334)
..+.+.++ +++||+||||||+ .|..|++||. .++++..+. +...+....+. . .....+++|+|||+|.
T Consensus 81 ~~~~~V~~~~g~~~~yD~LviAtG~-~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~vvVvG~G~ 155 (364)
T TIGR03169 81 PDRRKVLLANRPPLSYDVLSLDVGS-TTPLSGVEGA-ADLAVPVKPIENFLARWEALLES--A-DAPPGTKRLAVVGGGA 155 (364)
T ss_pred cccCEEEECCCCcccccEEEEccCC-CCCCCCCCcc-cccccccCCHHHHHHHHHHHHHH--H-hcCCCCceEEEECCCH
Confidence 23445544 4689999999999 5888899984 334433222 11100000000 0 0012467999999999
Q ss_pred HHHHHHHHHccCCcccccccccHHHHHHHhcCCc-ceEEEEeecCccccCCCH---HHHHHHHcCCceEEEEccCc
Q 019876 170 VALDVARILLRPTEELATTDIASYAWTALEGSSI-RKVYLVGRRGPVQAACTA---KELREILGIKNLYVHIREDD 241 (334)
Q Consensus 170 ~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~~~~~~~ 241 (334)
+|+|+|..|++ .+++.+. .+|+++ +.+.++..+.+ +.+.+.|+..||+++.+...
T Consensus 156 ~g~E~A~~l~~----------------~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v 214 (364)
T TIGR03169 156 AGVEIALALRR----------------RLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPV 214 (364)
T ss_pred HHHHHHHHHHH----------------HHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCee
Confidence 99999999974 1112332 379999 66666665543 56777888999999987544
No 75
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.80 E-value=1.4e-18 Score=167.84 Aligned_cols=215 Identities=15% Similarity=0.100 Sum_probs=131.9
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc-cccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeE
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF-GLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g-g~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (334)
..++++|||||||+||+.+|..|.+. +.+|+||++++... ..+.+....+.....++...+...+...+++++.+..
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~--~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V 84 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPK--KYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVV 84 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcC--CCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEE
Confidence 34567999999999999999998654 48999999987631 1111111122223445656667777777888887755
Q ss_pred Ec-----eEEec----------ccc-eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHH------HHhcCC---CCC
Q 019876 95 LG-----SSVSL----------SEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV------WWYNGH---PDG 149 (334)
Q Consensus 95 v~-----~~v~~----------~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~------~~~~~~---~~~ 149 (334)
.. +.+.+ .++ +++||+||||||+ .+..+++||.+. .++....+. ..+... .+.
T Consensus 85 ~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs-~~~~~~ipG~~e-~~~~~~~~~~a~~~~~~l~~~~~~~~~ 162 (424)
T PTZ00318 85 YDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGA-RPNTFNIPGVEE-RAFFLKEVNHARGIRKRIVQCIERASL 162 (424)
T ss_pred EEEEcCCCEEEEecccccccccCCceEecCCEEEECCCc-ccCCCCCCCHHH-cCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 42 23333 223 4699999999999 588889999752 222222211 111000 000
Q ss_pred CCC-CCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCH---HHHH
Q 019876 150 KNL-SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTA---KELR 225 (334)
Q Consensus 150 ~~~-~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~---~~~~ 225 (334)
... ....+..++++|||+|++|+|+|..|+....+. .......+ +.+ .+|+++++.+.++..++. +.+.
T Consensus 163 ~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~-----~~~~~~~~-~~~-~~Vtlv~~~~~ll~~~~~~~~~~~~ 235 (424)
T PTZ00318 163 PTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDD-----VRNLNPEL-VEE-CKVTVLEAGSEVLGSFDQALRKYGQ 235 (424)
T ss_pred CCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHH-----HHhhhhcc-ccc-CEEEEEcCCCcccccCCHHHHHHHH
Confidence 000 000113369999999999999999987410000 00000000 023 469999999888877754 5667
Q ss_pred HHHcCCceEEEEccCc
Q 019876 226 EILGIKNLYVHIREDD 241 (334)
Q Consensus 226 ~~l~~~gv~~~~~~~~ 241 (334)
+.|+..||+++++...
T Consensus 236 ~~L~~~gV~v~~~~~v 251 (424)
T PTZ00318 236 RRLRRLGVDIRTKTAV 251 (424)
T ss_pred HHHHHCCCEEEeCCeE
Confidence 7889999999987644
No 76
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=8.9e-19 Score=157.39 Aligned_cols=199 Identities=22% Similarity=0.296 Sum_probs=144.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc--cc-----CCCCcchhHHHHHHHHHhhcCCcEEE
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV-----APDHPETKIVINQFSRVVQHERCSFF 90 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~--~~-----~p~~~~~~~~~~~~~~~~~~~~i~~~ 90 (334)
..++|+|||+||||.+||.|.+++| .+.-++-. ..||+..- ++ .|. ....++...+.++.+++.+++.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKG--iRTGl~ae--rfGGQvldT~~IENfIsv~~-teGpkl~~ale~Hv~~Y~vDim 284 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKG--IRTGLVAE--RFGGQVLDTMGIENFISVPE-TEGPKLAAALEAHVKQYDVDVM 284 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhc--chhhhhhh--hhCCeeccccchhheecccc-ccchHHHHHHHHHHhhcCchhh
Confidence 4689999999999999999999997 88777753 34555422 22 122 2233567778888888888775
Q ss_pred eCeEEc-----------eEEecccce-eccCeEEEeccCCCCCCCCCCCcc---CCCccchhhHHHHhcCCCCCCCCCCC
Q 019876 91 GNVTLG-----------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPD 155 (334)
Q Consensus 91 ~~~~v~-----------~~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~---~~~v~~~~~~~~~~~~~~~~~~~~~~ 155 (334)
...+.. ..++++++. .....+|||||+ +++.+++||++ .+||.+| -+||. .
T Consensus 285 n~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGA-rWRn~nvPGE~e~rnKGVayC--------PHCDG-----P 350 (520)
T COG3634 285 NLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGA-RWRNMNVPGEDEYRNKGVAYC--------PHCDG-----P 350 (520)
T ss_pred hhhhhhcceecCCCCccEEEEecCCceeccceEEEecCc-chhcCCCCchHHHhhCCeeeC--------CCCCC-----c
Confidence 443321 245565554 378999999999 58889999986 3555433 45543 4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEE
Q 019876 156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV 235 (334)
Q Consensus 156 ~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~ 235 (334)
++++|+|+|||||++|+|.|..|+. -+.+||+++-.+.+
T Consensus 351 LF~gK~VAVIGGGNSGvEAAIDLAG---------------------iv~hVtllEF~~eL-------------------- 389 (520)
T COG3634 351 LFKGKRVAVIGGGNSGVEAAIDLAG---------------------IVEHVTLLEFAPEL-------------------- 389 (520)
T ss_pred ccCCceEEEECCCcchHHHHHhHHh---------------------hhheeeeeecchhh--------------------
Confidence 6799999999999999999999994 56799999765433
Q ss_pred EEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876 236 HIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (334)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~ 311 (334)
.++ +.||+++. .-++|.+++|...++|. | +..+|++++..+
T Consensus 390 -----------------kAD-------~VLq~kl~--------sl~Nv~ii~na~Ttei~--G-dg~kV~Gl~Y~d 430 (520)
T COG3634 390 -----------------KAD-------AVLQDKLR--------SLPNVTIITNAQTTEVK--G-DGDKVTGLEYRD 430 (520)
T ss_pred -----------------hhH-------HHHHHHHh--------cCCCcEEEecceeeEEe--c-CCceecceEEEe
Confidence 111 23444443 35789999999999999 8 346899998876
No 77
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.5e-18 Score=166.26 Aligned_cols=165 Identities=21% Similarity=0.220 Sum_probs=115.0
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCe-EEEEcCCCCCccccccccC--------------CCCcc--------hhH
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGVA--------------PDHPE--------TKI 73 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~-v~vie~~~~~gg~~~~~~~--------------p~~~~--------~~~ 73 (334)
....+|+|||||++|+++|..|++.+ .. ++|||+++.+||.|++..+ |.++. ...
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g--~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~ 83 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAG--VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE 83 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcC--CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence 45689999999999999999999998 44 9999999999998755321 22222 113
Q ss_pred HHHHHHHHhhcCCcEE----EeCeEEc--------eEEecccce---eccCeEEEeccCCC-CCCCCCCCccC-CC-ccc
Q 019876 74 VINQFSRVVQHERCSF----FGNVTLG--------SSVSLSELR---QLYHVVVLAYGAES-DRALGIPGEDL-IG-VHS 135 (334)
Q Consensus 74 ~~~~~~~~~~~~~i~~----~~~~~v~--------~~v~~~~~~---~~yd~lIlATGs~~-p~~~~ipG~~~-~~-v~~ 135 (334)
+..++..+++.+++.+ ...+.+. -.|+++++. +.+|.||+|||... |+.|.++|.+. .| +++
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~H 163 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILH 163 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEc
Confidence 5666667776665543 2222221 123333333 34999999999744 99999999863 22 222
Q ss_pred hhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
+.++ ++. ...++|+|+|||+|++|+++|..|.+ .+ ++||++.|++..
T Consensus 164 S~~~-------~~~-----~~~~GKrV~VIG~GaSA~di~~~l~~--------------------~g-a~vt~~qRs~~~ 210 (443)
T COG2072 164 SADW-------PNP-----EDLRGKRVLVIGAGASAVDIAPELAE--------------------VG-ASVTLSQRSPPH 210 (443)
T ss_pred hhcC-------CCc-----cccCCCeEEEECCCccHHHHHHHHHh--------------------cC-CeeEEEecCCCc
Confidence 2221 111 12389999999999999999999996 56 689999999765
Q ss_pred c
Q 019876 216 Q 216 (334)
Q Consensus 216 ~ 216 (334)
.
T Consensus 211 ~ 211 (443)
T COG2072 211 I 211 (443)
T ss_pred e
Confidence 4
No 78
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.78 E-value=2.2e-17 Score=160.66 Aligned_cols=162 Identities=12% Similarity=0.190 Sum_probs=104.6
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcch--------------------------h
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET--------------------------K 72 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~--------------------------~ 72 (334)
+++++|||+||+|+.||.. ..| .+|+|||++...|.|+++||.|.+.+. +
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g--~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FAD--KRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCC--CeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHH
Confidence 4799999999999998654 355 999999986544445566887765321 1
Q ss_pred HHHHH--------H----HHHh---hcCCcEEEeCeEE---ceEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCc
Q 019876 73 IVINQ--------F----SRVV---QHERCSFFGNVTL---GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGV 133 (334)
Q Consensus 73 ~~~~~--------~----~~~~---~~~~i~~~~~~~v---~~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v 133 (334)
.+..+ + .... +..+++++.+... ...+.+.++ .+.||+||||||+ .|..|++.+.+...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs-~p~~p~~~~~~~~~~ 156 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGS-RPYIPPAIADSGVRY 156 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECC-CCCCCCCCCCCCCEE
Confidence 11111 1 0111 1257777766543 234555443 4689999999999 577776444322223
Q ss_pred cchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (334)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~ 213 (334)
.+..+... .. ..+++++|||+|++|+|+|..|++ .|. +||++++.+
T Consensus 157 ~~~~~~~~----l~---------~~~k~vvVIGgG~ig~E~A~~l~~--------------------~G~-~Vtli~~~~ 202 (452)
T TIGR03452 157 HTNEDIMR----LP---------ELPESLVIVGGGYIAAEFAHVFSA--------------------LGT-RVTIVNRST 202 (452)
T ss_pred EcHHHHHh----hh---------hcCCcEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEEccC
Confidence 33333321 10 136899999999999999999986 565 699999988
Q ss_pred ccccCC
Q 019876 214 PVQAAC 219 (334)
Q Consensus 214 ~~~~~~ 219 (334)
.++..+
T Consensus 203 ~ll~~~ 208 (452)
T TIGR03452 203 KLLRHL 208 (452)
T ss_pred cccccc
Confidence 765433
No 79
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.74 E-value=1.9e-17 Score=158.64 Aligned_cols=149 Identities=26% Similarity=0.379 Sum_probs=106.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc--------c---------------CCCC------
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG--------V---------------APDH------ 68 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~--------~---------------~p~~------ 68 (334)
..++|+|||||||||++|..|++.| .++++||+.+.+||+|.|. - +|++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~ 82 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERD 82 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCC--CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccC
Confidence 4679999999999999999999997 9999999999999999764 1 1111
Q ss_pred ----cchhHHHHHHHHHhhcCCc--EEEeCeEE---c-----e-EEeccc-----ceeccCeEEEeccCCC-CCCCCCCC
Q 019876 69 ----PETKIVINQFSRVVQHERC--SFFGNVTL---G-----S-SVSLSE-----LRQLYHVVVLAYGAES-DRALGIPG 127 (334)
Q Consensus 69 ----~~~~~~~~~~~~~~~~~~i--~~~~~~~v---~-----~-~v~~~~-----~~~~yd~lIlATGs~~-p~~~~ipG 127 (334)
+...++.+|+..+++++++ .+.+++.+ . . .|...+ .+.-||.|++|||.+. |+.|.+||
T Consensus 83 ~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g 162 (448)
T KOG1399|consen 83 PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG 162 (448)
T ss_pred cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence 2234788999999998885 24444422 1 0 122211 1235999999999976 88888887
Q ss_pred cc---CCC-ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876 128 ED---LIG-VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180 (334)
Q Consensus 128 ~~---~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~ 180 (334)
.. .+| ++++ .+|+ ..+...+|+|+|||+|++|+|+|..++.
T Consensus 163 ~~~~~f~G~~iHS----------~~Yk--~~e~f~~k~VlVIG~g~SG~DIs~d~~~ 207 (448)
T KOG1399|consen 163 PGIESFKGKIIHS----------HDYK--SPEKFRDKVVLVVGCGNSGMDISLDLLR 207 (448)
T ss_pred CchhhcCCcceeh----------hhcc--CcccccCceEEEECCCccHHHHHHHHHH
Confidence 32 222 2222 2222 1234488999999999999999999885
No 80
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.71 E-value=1.1e-16 Score=145.65 Aligned_cols=165 Identities=17% Similarity=0.245 Sum_probs=110.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCcchhH--HHHHHHH-HhhcCC-------
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKI--VINQFSR-VVQHER------- 86 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~~~~~--~~~~~~~-~~~~~~------- 86 (334)
..++++|||+||+|..||..+.+.| ++.+.+|++..+||.+.. ||.|.+.+... ++..++. .++..|
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlG--lkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~ 115 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLG--LKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVS 115 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhc--ceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccccee
Confidence 5689999999999999999999998 999999999888876644 88888654321 1121221 233333
Q ss_pred -----------------------------cEEEeCeE--Ec-eEEec--cc---ceeccCeEEEeccCCCCCCCCCCCcc
Q 019876 87 -----------------------------CSFFGNVT--LG-SSVSL--SE---LRQLYHVVVLAYGAESDRALGIPGED 129 (334)
Q Consensus 87 -----------------------------i~~~~~~~--v~-~~v~~--~~---~~~~yd~lIlATGs~~p~~~~ipG~~ 129 (334)
+++..+.- ++ ..|.. .+ ..+.+..+||||||. .+++||.+
T Consensus 116 ~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSe---V~~~PGI~ 192 (506)
T KOG1335|consen 116 LDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE---VTPFPGIT 192 (506)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCc---cCCCCCeE
Confidence 33332211 11 11222 12 235789999999994 23566753
Q ss_pred --CCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEE
Q 019876 130 --LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY 207 (334)
Q Consensus 130 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt 207 (334)
.+-+.++...+. + -+.+++.+|||+|.+|+|++....+ +|+ +||
T Consensus 193 IDekkIVSStgALs-L------------~~vPk~~~viG~G~IGLE~gsV~~r--------------------LGs-eVT 238 (506)
T KOG1335|consen 193 IDEKKIVSSTGALS-L------------KEVPKKLTVIGAGYIGLEMGSVWSR--------------------LGS-EVT 238 (506)
T ss_pred ecCceEEecCCccc-h------------hhCcceEEEEcCceeeeehhhHHHh--------------------cCC-eEE
Confidence 444554432221 0 1257999999999999999988886 787 599
Q ss_pred EEeecCccccCCCH
Q 019876 208 LVGRRGPVQAACTA 221 (334)
Q Consensus 208 iv~r~~~~~~~~~~ 221 (334)
+|+-.+.+...++.
T Consensus 239 ~VEf~~~i~~~mD~ 252 (506)
T KOG1335|consen 239 VVEFLDQIGGVMDG 252 (506)
T ss_pred EEEehhhhccccCH
Confidence 99998877655443
No 81
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=3.8e-16 Score=140.56 Aligned_cols=165 Identities=19% Similarity=0.274 Sum_probs=114.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc-cccccCCCCcch-------------------------
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPET------------------------- 71 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~-~~~~~~p~~~~~------------------------- 71 (334)
+..+..|||||.+|+++|+.++..| .++.|+|..-.+||. .++||.|.+...
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~G--Akv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f 96 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHG--AKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF 96 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcC--ceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC
Confidence 4789999999999999999999997 999999987456654 445665543210
Q ss_pred ---------hHHHHHH----HHHhhcCCcEEEeCeE-E-c---eEEecccce---eccCeEEEeccCCCCCCCCCCCccC
Q 019876 72 ---------KIVINQF----SRVVQHERCSFFGNVT-L-G---SSVSLSELR---QLYHVVVLAYGAESDRALGIPGEDL 130 (334)
Q Consensus 72 ---------~~~~~~~----~~~~~~~~i~~~~~~~-v-~---~~v~~~~~~---~~yd~lIlATGs~~p~~~~ipG~~~ 130 (334)
.....++ +..+.+.+++++.+.. + + .+|...++. +.+.+++||||. .|..|.|||.+.
T Consensus 97 dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg-~p~~PnIpG~E~ 175 (478)
T KOG0405|consen 97 DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGG-RPIIPNIPGAEL 175 (478)
T ss_pred cHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCC-ccCCCCCCchhh
Confidence 0122222 3334455677766543 1 1 234444443 578999999999 599999999752
Q ss_pred CCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEe
Q 019876 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (334)
Q Consensus 131 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~ 210 (334)
++ ++..|+ ... ..+||++|||+|++|+|+|..++. +|. +++++-
T Consensus 176 -gi-dSDgff----~Le---------e~Pkr~vvvGaGYIavE~Agi~~g--------------------Lgs-ethlfi 219 (478)
T KOG0405|consen 176 -GI-DSDGFF----DLE---------EQPKRVVVVGAGYIAVEFAGIFAG--------------------LGS-ETHLFI 219 (478)
T ss_pred -cc-cccccc----chh---------hcCceEEEEccceEEEEhhhHHhh--------------------cCC-eeEEEE
Confidence 11 111111 010 257999999999999999999986 787 599999
Q ss_pred ecCccccCCCH
Q 019876 211 RRGPVQAACTA 221 (334)
Q Consensus 211 r~~~~~~~~~~ 221 (334)
|.+.++..|++
T Consensus 220 R~~kvLR~FD~ 230 (478)
T KOG0405|consen 220 RQEKVLRGFDE 230 (478)
T ss_pred ecchhhcchhH
Confidence 99988877654
No 82
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.59 E-value=1.2e-14 Score=140.55 Aligned_cols=153 Identities=17% Similarity=0.211 Sum_probs=98.9
Q ss_pred HHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCC-----cchhHHHHH-HHHHhhcCCcEEEeCeEEc------eEEe
Q 019876 33 YTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH-----PETKIVINQ-FSRVVQHERCSFFGNVTLG------SSVS 100 (334)
Q Consensus 33 ~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~-----~~~~~~~~~-~~~~~~~~~i~~~~~~~v~------~~v~ 100 (334)
+||.+|++.+++.+|+|||+++..+ ...+++ |.. ...++...+ ..+++...+++++.+..|. ..+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~-~~~~~l-~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~ 78 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVS-FANCGL-PYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV 78 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCcee-EEcCCC-CeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE
Confidence 4788998887789999999987542 111111 211 112232322 2345577899987765542 1232
Q ss_pred ccc----ceec--cCeEEEeccCCCCCCCCCCCccCCCccchhhHHHH--hcCCCCCCCCCCCCCCCCeEEEEcCCHHHH
Q 019876 101 LSE----LRQL--YHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (334)
Q Consensus 101 ~~~----~~~~--yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~ 172 (334)
+.. .... ||+||||||+ .|+.|++||.+.+++++..++... +....+ -..+++|+|||+|++|+
T Consensus 79 ~~~~~~~~~~~~~yd~lIiATG~-~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~-------~~~~~~vvViGgG~~g~ 150 (427)
T TIGR03385 79 VRNNKTNETYEESYDYLILSPGA-SPIVPNIEGINLDIVFTLRNLEDTDAIKQYID-------KNKVENVVIIGGGYIGI 150 (427)
T ss_pred EEECCCCCEEecCCCEEEECCCC-CCCCCCCCCcCCCCEEEECCHHHHHHHHHHHh-------hcCCCeEEEECCCHHHH
Confidence 321 1345 9999999999 588889999876677665443211 000000 02468999999999999
Q ss_pred HHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (334)
Q Consensus 173 e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~ 216 (334)
|+|..|++ .+. +|+++.+.+.++
T Consensus 151 e~A~~l~~--------------------~g~-~Vtli~~~~~~~ 173 (427)
T TIGR03385 151 EMAEALRE--------------------RGK-NVTLIHRSERIL 173 (427)
T ss_pred HHHHHHHh--------------------CCC-cEEEEECCcccC
Confidence 99999986 565 699999987663
No 83
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.2e-14 Score=127.11 Aligned_cols=199 Identities=20% Similarity=0.294 Sum_probs=123.5
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcC---CCC-----Cccc-cccccCCCCcchh---------------
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR---LPT-----PFGL-VRSGVAPDHPETK--------------- 72 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~---~~~-----~gg~-~~~~~~p~~~~~~--------------- 72 (334)
.-.++++|||||.+|++||..++..| .+|.++|- .|. +||. .+.||+|.+....
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G--~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLG--AKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcC--CcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 35689999999999999999999997 89999873 222 2343 3446766542211
Q ss_pred -------------HHHHHHHHHhhcCC-----------cEEEeC--eEEc-eEE--ecccc---eeccCeEEEeccCCCC
Q 019876 73 -------------IVINQFSRVVQHER-----------CSFFGN--VTLG-SSV--SLSEL---RQLYHVVVLAYGAESD 120 (334)
Q Consensus 73 -------------~~~~~~~~~~~~~~-----------i~~~~~--~~v~-~~v--~~~~~---~~~yd~lIlATGs~~p 120 (334)
.+.+..++..+..+ ++++.. .-++ +.+ +...+ ...++.++||||. +|
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~-RP 173 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGL-RP 173 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecC-CC
Confidence 11222222222211 111000 0001 011 11222 2478999999999 69
Q ss_pred CCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhc
Q 019876 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200 (334)
Q Consensus 121 ~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~ 200 (334)
+.|+|||...-++.+ .++. ..+ +.+-+-+|||+|++|+|+|..|+.
T Consensus 174 rYp~IpG~~Ey~ITS-DDlF----sl~---------~~PGkTLvVGa~YVaLECAgFL~g-------------------- 219 (503)
T KOG4716|consen 174 RYPDIPGAKEYGITS-DDLF----SLP---------YEPGKTLVVGAGYVALECAGFLKG-------------------- 219 (503)
T ss_pred CCCCCCCceeeeecc-cccc----ccc---------CCCCceEEEccceeeeehhhhHhh--------------------
Confidence 999999965333322 1211 111 234567899999999999999995
Q ss_pred CCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCc
Q 019876 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQ 280 (334)
Q Consensus 201 ~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (334)
.|. +||++.|+-.+ ..+++.+++.+.+++. +
T Consensus 220 fg~-~vtVmVRSI~L---------------------------------------rGFDqdmae~v~~~m~---------~ 250 (503)
T KOG4716|consen 220 FGY-DVTVMVRSILL---------------------------------------RGFDQDMAELVAEHME---------E 250 (503)
T ss_pred cCC-CcEEEEEEeec---------------------------------------ccccHHHHHHHHHHHH---------H
Confidence 665 59999987432 2334555667777765 7
Q ss_pred eEEEEEeccccceeeccccCCCC
Q 019876 281 RELHFVFFRKPDSFLESNERSGH 303 (334)
Q Consensus 281 ~gv~~~~~~~~~~i~~~~~~~~~ 303 (334)
.||+|.-...|..+.+.+ +++
T Consensus 251 ~Gikf~~~~vp~~Veq~~--~g~ 271 (503)
T KOG4716|consen 251 RGIKFLRKTVPERVEQID--DGK 271 (503)
T ss_pred hCCceeecccceeeeecc--CCc
Confidence 899999888888887432 455
No 84
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.54 E-value=7e-14 Score=129.37 Aligned_cols=193 Identities=18% Similarity=0.176 Sum_probs=112.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC-ccccccccCCCCcchhHHHHHHHHHhhcC--CcEEEeCeE
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVVQHE--RCSFFGNVT 94 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~-gg~~~~~~~p~~~~~~~~~~~~~~~~~~~--~i~~~~~~~ 94 (334)
++++|||+|+|.+|.+++..|-... ++|+|++++++. ...+...+.-+....+.+.+......... +++++....
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~--YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec 131 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSL--YDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAEC 131 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccc--cceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEeccc
Confidence 5689999999999999999998875 999999988652 11111111112223455666666665544 345543322
Q ss_pred E--c---eEEec----c-c----ceeccCeEEEeccCCCCCCCCCCCccC-----CCccchhhHHHHhcCCCC---CCCC
Q 019876 95 L--G---SSVSL----S-E----LRQLYHVVVLAYGAESDRALGIPGEDL-----IGVHSAREFVWWYNGHPD---GKNL 152 (334)
Q Consensus 95 v--~---~~v~~----~-~----~~~~yd~lIlATGs~~p~~~~ipG~~~-----~~v~~~~~~~~~~~~~~~---~~~~ 152 (334)
+ + +.+.. + . ..+.||+||+|+|+ .+..++|||... +-+.++.++...+-...+ ...+
T Consensus 132 ~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA-~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l 210 (491)
T KOG2495|consen 132 TKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGA-EPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGL 210 (491)
T ss_pred EeecccccEEEEeeeccCCCcceeeecccEEEEeccC-CCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCC
Confidence 2 1 11211 1 1 23589999999999 589999999753 222333222111110000 0011
Q ss_pred C-CCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcC-CcceEEEEeecCccccCCCH
Q 019876 153 S-PDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS-SIRKVYLVGRRGPVQAACTA 221 (334)
Q Consensus 153 ~-~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~Vtiv~r~~~~~~~~~~ 221 (334)
. ++..+--++||||||++|+|+|.+|+. .++.....++... .--+||+++..+.+++.|+.
T Consensus 211 ~~eerkRlLh~VVVGGGPTGVEFAaEL~D--------fi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdk 273 (491)
T KOG2495|consen 211 SDEERKRLLHFVVVGGGPTGVEFAAELAD--------FIPEDLRKIYPELKKDIKVTLIEAADHILNMFDK 273 (491)
T ss_pred ChHHhhheEEEEEECCCCcceeehHHHHH--------HHHHHHHHhhhcchhheEEEeeccchhHHHHHHH
Confidence 0 111233589999999999999999985 2222222222211 12259999988877655544
No 85
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.51 E-value=5.6e-13 Score=127.54 Aligned_cols=164 Identities=20% Similarity=0.182 Sum_probs=106.0
Q ss_pred EEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc---cccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc--
Q 019876 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-- 96 (334)
Q Consensus 22 vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~---~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-- 96 (334)
++|||+|++|+.+|..+++..++.+++++..++..... +.+.+.........+..... +....++++..++.+.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~v~~i 79 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTEVTSI 79 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCEEEEe
Confidence 58999999999999999998888999988877543111 11111111111122222112 2235578887776542
Q ss_pred ----eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHH--hcCCCCCCCCCCCCCCCCeEEEEcCCHH
Q 019876 97 ----SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKSTDTAVILGQGNV 170 (334)
Q Consensus 97 ----~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~k~vvVIG~G~~ 170 (334)
..+.+.++++.||++++|||+ .|..++ +....++++.+..... +... ....++++|||+|.+
T Consensus 80 d~~~~~v~~~~g~~~yd~LvlatGa-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~vvG~G~~ 147 (415)
T COG0446 80 DPENKVVLLDDGEIEYDYLVLATGA-RPRPPP--ISDWEGVVTLRLREDAEALKGG---------AEPPKDVVVVGAGPI 147 (415)
T ss_pred cCCCCEEEECCCcccccEEEEcCCC-cccCCC--ccccCceEEECCHHHHHHHHHH---------HhccCeEEEECCcHH
Confidence 345555566789999999999 477665 4444555554433321 1111 112589999999999
Q ss_pred HHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCC
Q 019876 171 ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAAC 219 (334)
Q Consensus 171 g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~ 219 (334)
|+++|..+.+ .|. +|++++..+++...+
T Consensus 148 gle~A~~~~~--------------------~G~-~v~l~e~~~~~~~~~ 175 (415)
T COG0446 148 GLEAAEAAAK--------------------RGK-KVTLIEAADRLGGQL 175 (415)
T ss_pred HHHHHHHHHH--------------------cCC-eEEEEEcccccchhh
Confidence 9999999996 675 699999998875433
No 86
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.36 E-value=8.1e-12 Score=117.00 Aligned_cols=166 Identities=18% Similarity=0.145 Sum_probs=96.5
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC---ccccccc----c----------CC----------------
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLVRSG----V----------AP---------------- 66 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~---gg~~~~~----~----------~p---------------- 66 (334)
.++++||.||++|+.|..|...+ ..++..+|+.+.. -|++..+ + -|
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred eeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 58999999999999999999886 6899999987652 1222110 0 00
Q ss_pred --------CCcchhHHHHHHHHHhhcCCcEEEeCeEEc------------eEEecc-----cceeccCeEEEeccCCCCC
Q 019876 67 --------DHPETKIVINQFSRVVQHERCSFFGNVTLG------------SSVSLS-----ELRQLYHVVVLAYGAESDR 121 (334)
Q Consensus 67 --------~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~------------~~v~~~-----~~~~~yd~lIlATGs~~p~ 121 (334)
.++...++.+|+.+..++.+-.+..+..|. -.|... .....++.||||||. .|.
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~-~P~ 160 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG-QPR 160 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE-----EE-
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC-CCC
Confidence 112234566777777777664466665542 123331 123478999999997 587
Q ss_pred CCCCCC-cc-CCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHh
Q 019876 122 ALGIPG-ED-LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALE 199 (334)
Q Consensus 122 ~~~ipG-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~ 199 (334)
.|..-. .. .+.|++..+++..... ....++|+|||||.+|.|++..|.+
T Consensus 161 iP~~~~~~~~~~~v~Hss~~~~~~~~----------~~~~~~V~VVGgGQSAAEi~~~L~~------------------- 211 (341)
T PF13434_consen 161 IPEWFQDLPGSPRVFHSSEYLSRIDQ----------SLAGKRVAVVGGGQSAAEIFLDLLR------------------- 211 (341)
T ss_dssp --GGGGGGTT-TTEEEGGGHHHHHT---------------EEEEEE-SSHHHHHHHHHHHH-------------------
T ss_pred CCcchhhcCCCCCEEEehHhhhcccc----------ccCCCeEEEECCcHhHHHHHHHHHh-------------------
Confidence 764332 22 3678888888765432 2267999999999999999999986
Q ss_pred cCCcceEEEEeecCccc
Q 019876 200 GSSIRKVYLVGRRGPVQ 216 (334)
Q Consensus 200 ~~~~~~Vtiv~r~~~~~ 216 (334)
+....+|+++.|+..+.
T Consensus 212 ~~~~~~V~~i~R~~~~~ 228 (341)
T PF13434_consen 212 RGPEAKVTWISRSPGFF 228 (341)
T ss_dssp H-TTEEEEEEESSSS-E
T ss_pred CCCCcEEEEEECCCccC
Confidence 22325799999997554
No 87
>PRK09897 hypothetical protein; Provisional
Probab=99.27 E-value=1.7e-10 Score=113.76 Aligned_cols=39 Identities=23% Similarity=0.447 Sum_probs=34.3
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g 57 (334)
+++|+||||||+|+++|..|.+.....+|+|||+...+|
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 368999999999999999999876568999999987666
No 88
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.27 E-value=2.7e-12 Score=110.95 Aligned_cols=128 Identities=23% Similarity=0.364 Sum_probs=77.0
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcc------hhHHH--H--HHHHHhhcCCcEEE
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPE------TKIVI--N--QFSRVVQHERCSFF 90 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~------~~~~~--~--~~~~~~~~~~i~~~ 90 (334)
||+||||||||++||.+|++.+ .+++|+++.+..+.. ...+ +.... ..... . .+.+.+...+++++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~--~~v~ii~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 76 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG--AKVLIIEKSPGTPYN-SGCI-PSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIR 76 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--SEEEEESSSSHHHHH-HSHH-HHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEE
T ss_pred CEEEEecHHHHHHHHHHHhcCC--CeEEEEecccccccc-cccc-cccccccccccccccccccccccccccccceEEEe
Confidence 6999999999999999999876 999999887643221 1101 11000 00111 1 33333455678774
Q ss_pred eCeEE-c-----eE-------E----ecccceeccCeEEEeccCCCCCCCCCCCcc----CCCccchhhHHHHhcCCCCC
Q 019876 91 GNVTL-G-----SS-------V----SLSELRQLYHVVVLAYGAESDRALGIPGED----LIGVHSAREFVWWYNGHPDG 149 (334)
Q Consensus 91 ~~~~v-~-----~~-------v----~~~~~~~~yd~lIlATGs~~p~~~~ipG~~----~~~v~~~~~~~~~~~~~~~~ 149 (334)
.+..+ . .. + ..+..++.||+||||||+ .|+.|++||.+ ..++.++..+.....
T Consensus 77 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~----- 150 (201)
T PF07992_consen 77 LNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS-RPRTPNIPGEEVAYFLRGVDDAQRFLELLE----- 150 (201)
T ss_dssp HHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE-EEEEESSTTTTTECBTTSEEHHHHHHTHSS-----
T ss_pred eccccccccccccccccCcccceeeccCCceEecCCeeeecCcc-ccceeecCCCcccccccccccccccccccc-----
Confidence 43322 1 11 1 112234689999999998 58888999963 234555544443221
Q ss_pred CCCCCCCCCCCeEEEEc
Q 019876 150 KNLSPDLKSTDTAVILG 166 (334)
Q Consensus 150 ~~~~~~~~~~k~vvVIG 166 (334)
..++|+|||
T Consensus 151 --------~~~~v~VvG 159 (201)
T PF07992_consen 151 --------SPKRVAVVG 159 (201)
T ss_dssp --------TTSEEEEES
T ss_pred --------ccccccccc
Confidence 345999999
No 89
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.12 E-value=3.2e-10 Score=83.45 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=59.0
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccC
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~ 240 (334)
+|+|||||++|+|+|..|++ .+. +||+++|++.++..+ ++.+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--------------------~g~-~vtli~~~~~~~~~~-~~~~~~-------------- 44 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--------------------LGK-EVTLIERSDRLLPGF-DPDAAK-------------- 44 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--------------------TTS-EEEEEESSSSSSTTS-SHHHHH--------------
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------hCc-EEEEEeccchhhhhc-CHHHHH--------------
Confidence 68999999999999999996 665 799999999887333 332222
Q ss_pred ccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (334)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~ 311 (334)
.+++.+. +.||++++++.+++|. .++++ ++ |++++
T Consensus 45 -----------------------~~~~~l~---------~~gV~v~~~~~v~~i~--~~~~~-~~-V~~~~ 79 (80)
T PF00070_consen 45 -----------------------ILEEYLR---------KRGVEVHTNTKVKEIE--KDGDG-VE-VTLED 79 (80)
T ss_dssp -----------------------HHHHHHH---------HTTEEEEESEEEEEEE--EETTS-EE-EEEET
T ss_pred -----------------------HHHHHHH---------HCCCEEEeCCEEEEEE--EeCCE-EE-EEEec
Confidence 2233332 5699999999999998 42344 87 88875
No 90
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.11 E-value=2.9e-09 Score=101.14 Aligned_cols=168 Identities=22% Similarity=0.328 Sum_probs=95.6
Q ss_pred CCeEEEECCchHHHHHHHHHhhcC-CCCeEEEEcCCCCCcccccccc-----------------CCCCc-----------
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGLVRSGV-----------------APDHP----------- 69 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~-~~~~v~vie~~~~~gg~~~~~~-----------------~p~~~----------- 69 (334)
+++|+|||+|++|+.+|.+|.+.- +...|.|||+.+..|+.+.|.- .|+.+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 479999999999999999999875 2344999999988766554421 12200
Q ss_pred ---------------------chhHHHHHHHHHhhcCC---cEEEeCeEEce---------EEecccce-eccCeEEEec
Q 019876 70 ---------------------ETKIVINQFSRVVQHER---CSFFGNVTLGS---------SVSLSELR-QLYHVVVLAY 115 (334)
Q Consensus 70 ---------------------~~~~~~~~~~~~~~~~~---i~~~~~~~v~~---------~v~~~~~~-~~yd~lIlAT 115 (334)
....+.+++..+++... +.++....++. .+...++. ..+|.+|+||
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 00011122222333222 44433333321 12233343 3799999999
Q ss_pred cCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHH
Q 019876 116 GAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAW 195 (334)
Q Consensus 116 Gs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~ 195 (334)
|...|..++ -..+.++-.. +.. .+.-......+....+|+|+|+|.+.+|....|.+.
T Consensus 161 gh~~~~~~~-~~~~~~~~~~---~ia----~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~-------------- 218 (474)
T COG4529 161 GHSAPPADP-AARDLKGSPR---LIA----DPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRR-------------- 218 (474)
T ss_pred cCCCCCcch-hhhccCCCcc---eec----cccCCcccccccCCCceEEecCCchhHHHHHHHhcc--------------
Confidence 984333322 1122221111 110 000001122344667899999999999999999872
Q ss_pred HHHhcCCcceEEEEeecC
Q 019876 196 TALEGSSIRKVYLVGRRG 213 (334)
Q Consensus 196 ~~~~~~~~~~Vtiv~r~~ 213 (334)
.....||+++|++
T Consensus 219 -----gh~g~It~iSRrG 231 (474)
T COG4529 219 -----GHKGPITAISRRG 231 (474)
T ss_pred -----CCccceEEEeccc
Confidence 2234699999997
No 91
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.01 E-value=4.3e-09 Score=97.75 Aligned_cols=98 Identities=21% Similarity=0.312 Sum_probs=71.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc--------ccccc---------------------------
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF--------GLVRS--------------------------- 62 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g--------g~~~~--------------------------- 62 (334)
..++|+|||||||||.||..+.+.+ .+|+|||+.+.+| |.++.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G--~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAG--RRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcC--CEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 3579999999999999999999997 9999999997753 33311
Q ss_pred ------------cc----------CCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc--------eEEecccc-eeccCeE
Q 019876 63 ------------GV----------APDHPETKIVINQFSRVVQHERCSFFGNVTLG--------SSVSLSEL-RQLYHVV 111 (334)
Q Consensus 63 ------------~~----------~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~--------~~v~~~~~-~~~yd~l 111 (334)
|+ +|.-.....+.+.+..-+++.||++++++.+. ..+++.++ ++.+|++
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSL 159 (408)
T ss_pred CHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEE
Confidence 00 12212233566666777788899999888763 23555666 5799999
Q ss_pred EEeccC
Q 019876 112 VLAYGA 117 (334)
Q Consensus 112 IlATGs 117 (334)
|||||.
T Consensus 160 ilAtGG 165 (408)
T COG2081 160 ILATGG 165 (408)
T ss_pred EEecCC
Confidence 999995
No 92
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=98.93 E-value=8.6e-10 Score=96.39 Aligned_cols=171 Identities=16% Similarity=0.189 Sum_probs=99.1
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc-c---CCCC----cchhHHHHHHHHHhhcCCcEEEeC
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-V---APDH----PETKIVINQFSRVVQHERCSFFGN 92 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~-~---~p~~----~~~~~~~~~~~~~~~~~~i~~~~~ 92 (334)
+.+|||||.||.+||..|+...|..+|.++...+..-..-+|. + ...| ....++...++.++.+ +.- .+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~--v~~-~~ 77 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND--VVT-WD 77 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHh--hhh-hc
Confidence 4689999999999999999999999999998875432221110 0 0000 0001122222222222 110 01
Q ss_pred eEEceEEeccc-ceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHH
Q 019876 93 VTLGSSVSLSE-LRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVA 171 (334)
Q Consensus 93 ~~v~~~v~~~~-~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g 171 (334)
.. .+.+.+++ .+..|++|.+|||+ +|.. ...|.+ +-+...++-.. ..-+.-.+.+.|.|.|+|.|-++
T Consensus 78 s~-ehci~t~~g~~~ky~kKOG~tg~-kPkl-q~E~~n-~~Iv~irDtDs-------aQllq~kl~kaK~VlilgnGgia 146 (334)
T KOG2755|consen 78 SS-EHCIHTQNGEKLKYFKLCLCTGY-KPKL-QVEGIN-PKIVGIRDTDS-------AQLLQCKLVKAKIVLILGNGGIA 146 (334)
T ss_pred cc-cceEEecCCceeeEEEEEEecCC-Ccce-eecCCC-ceEEEEecCcH-------HHHHHHHHhhcceEEEEecCchh
Confidence 11 11233333 34689999999999 5654 444422 12221111000 00011124478999999999999
Q ss_pred HHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHH
Q 019876 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREIL 228 (334)
Q Consensus 172 ~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l 228 (334)
+|.+.++. .. +|++......+...|.++-..+.+
T Consensus 147 ~El~yElk----------------------~~-nv~w~ikd~~IsaTFfdpGaaef~ 180 (334)
T KOG2755|consen 147 MELTYELK----------------------IL-NVTWKIKDEGISATFFDPGAAEFY 180 (334)
T ss_pred HHHHHHhh----------------------cc-eeEEEecchhhhhcccCccHHHHh
Confidence 99999987 33 588888888787777776555554
No 93
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.92 E-value=3e-09 Score=101.83 Aligned_cols=97 Identities=22% Similarity=0.265 Sum_probs=54.5
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc--------ccccc------------c----------------
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF--------GLVRS------------G---------------- 63 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g--------g~~~~------------~---------------- 63 (334)
++|+|||||||||.||..+++.+ .+|+|+|+++.+| |.++. .
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g--~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKG--ARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 58999999999999999999987 9999999997753 22211 0
Q ss_pred ------------c----------CCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce---------EEec-ccceeccCeE
Q 019876 64 ------------V----------APDHPETKIVINQFSRVVQHERCSFFGNVTLGS---------SVSL-SELRQLYHVV 111 (334)
Q Consensus 64 ------------~----------~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~---------~v~~-~~~~~~yd~l 111 (334)
+ +|......++.+.+...+++.++++++++.|.. .+.. ....+.+|+|
T Consensus 79 ~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEE
Confidence 0 111112234555666667778899998887631 2344 3445689999
Q ss_pred EEeccCC
Q 019876 112 VLAYGAE 118 (334)
Q Consensus 112 IlATGs~ 118 (334)
|||||..
T Consensus 159 ILAtGG~ 165 (409)
T PF03486_consen 159 ILATGGK 165 (409)
T ss_dssp EE----S
T ss_pred EEecCCC
Confidence 9999973
No 94
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=98.84 E-value=5.1e-09 Score=97.04 Aligned_cols=204 Identities=17% Similarity=0.156 Sum_probs=118.5
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC-c-------cccccccCCCCc-----------------ch
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-F-------GLVRSGVAPDHP-----------------ET 71 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~-g-------g~~~~~~~p~~~-----------------~~ 71 (334)
+++.-.+|||+|.+..+++...+...++..+.+|..++.. + .+|.|+- |.-. .+
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~d-pn~~k~lrfkqwsGkeRsiffep 254 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGD-PNSAKKLRFKQWSGKERSIFFEP 254 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCC-CChhhheeecccCCccceeEecC
Confidence 3456789999999999999988888788999999877542 1 2343322 1100 00
Q ss_pred hHHHHHH--HHHhhcCCcEEEeCeEE------ceEEecccce-eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHH
Q 019876 72 KIVINQF--SRVVQHERCSFFGNVTL------GSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW 142 (334)
Q Consensus 72 ~~~~~~~--~~~~~~~~i~~~~~~~v------~~~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~ 142 (334)
..+.-.. .....+-||-+..+..+ ++.|.++++. +.||+++||||. +|+.++.-....+.+..-.. .
T Consensus 255 d~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~-~Pk~l~~~~~A~~evk~kit---~ 330 (659)
T KOG1346|consen 255 DGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGV-RPKKLQVFEEASEEVKQKIT---Y 330 (659)
T ss_pred CcceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCc-CcccchhhhhcCHHhhhhee---E
Confidence 0000000 01122345666555443 2346666664 699999999999 58876542211111110000 1
Q ss_pred hcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec----CccccC
Q 019876 143 YNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR----GPVQAA 218 (334)
Q Consensus 143 ~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~----~~~~~~ 218 (334)
++...|+..+..-+...++|.|||+|++|.|+|-.|.+.. +..|.+ |+-+.-. +.+++.
T Consensus 331 fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~----------------r~~g~e-V~QvF~Ek~nm~kiLPe 393 (659)
T KOG1346|consen 331 FRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKY----------------RNEGVE-VHQVFEEKYNMEKILPE 393 (659)
T ss_pred EecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhh----------------hccCcE-EEEeecccCChhhhhHH
Confidence 1111222222222334589999999999999999998722 224654 6554332 345555
Q ss_pred CCHHHHHHHHcCCceEEEEccCcc
Q 019876 219 CTAKELREILGIKNLYVHIREDDL 242 (334)
Q Consensus 219 ~~~~~~~~~l~~~gv~~~~~~~~~ 242 (334)
+-.+--.+.+++.||.|+-+....
T Consensus 394 yls~wt~ekir~~GV~V~pna~v~ 417 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVDVRPNAKVE 417 (659)
T ss_pred HHHHHHHHHHHhcCceeccchhhh
Confidence 555555677788999998877653
No 95
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.82 E-value=4.1e-07 Score=84.73 Aligned_cols=168 Identities=15% Similarity=0.100 Sum_probs=104.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC---cccccccc--------------CCC-------------
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLVRSGV--------------APD------------- 67 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~---gg~~~~~~--------------~p~------------- 67 (334)
...+++.||-||+-++.|..|...+ +.++..+|+.+.. .|++..+. -|.
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~-~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHS-GLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred cceeeEEEccCchHHHHHHHhcccc-CcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 4579999999999999999998875 5789999998752 23221110 010
Q ss_pred -----------CcchhHHHHHHHHHhhcCCcEEEeCeEEce------------EEecccc-eeccCeEEEeccCCCCCCC
Q 019876 68 -----------HPETKIVINQFSRVVQHERCSFFGNVTLGS------------SVSLSEL-RQLYHVVVLAYGAESDRAL 123 (334)
Q Consensus 68 -----------~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~------------~v~~~~~-~~~yd~lIlATGs~~p~~~ 123 (334)
+....++.+|..+....+ -.++++..|.. .+...+. ...+..|||++|. .|+.|
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~-~P~IP 160 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGT-QPYIP 160 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCC-CcCCC
Confidence 111234455555554443 33444544420 1222222 4578999999999 58877
Q ss_pred C-CCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCC
Q 019876 124 G-IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (334)
Q Consensus 124 ~-ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~ 202 (334)
+ +.....+.+++..+++..... +...++|.|||+|-+|.|+...|..... ...
T Consensus 161 ~~f~~l~~~~vfHss~~~~~~~~----------~~~~~~V~ViG~GQSAAEi~~~Ll~~~~----------------~~~ 214 (436)
T COG3486 161 PCFRSLIGERVFHSSEYLERHPE----------LLQKRSVTVIGSGQSAAEIFLDLLNSQP----------------PQD 214 (436)
T ss_pred hHHhCcCccceeehHHHHHhhHH----------hhcCceEEEEcCCccHHHHHHHHHhCCC----------------CcC
Confidence 4 333334568888887753222 2233459999999999999988875221 122
Q ss_pred cceEEEEeecCcc
Q 019876 203 IRKVYLVGRRGPV 215 (334)
Q Consensus 203 ~~~Vtiv~r~~~~ 215 (334)
. ++.++.|+..+
T Consensus 215 ~-~l~witR~~gf 226 (436)
T COG3486 215 Y-QLNWITRSSGF 226 (436)
T ss_pred c-cceeeeccCCC
Confidence 2 48889998654
No 96
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.73 E-value=1.1e-07 Score=85.71 Aligned_cols=100 Identities=20% Similarity=0.271 Sum_probs=66.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-c--------------------c-----CCCC--c
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-G--------------------V-----APDH--P 69 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~--------------------~-----~p~~--~ 69 (334)
...+|+||||||||++||.+|++.+ ++|+|+|+.+.+||.+.. + + .++. .
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G--~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~v 101 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAG--LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVA 101 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceec
Confidence 3579999999999999999999986 999999998876543211 1 0 0000 1
Q ss_pred chhHHHHHHHHHhhcCCcEEEeCeEEceEEe----------c------------ccceeccCeEEEeccCCC
Q 019876 70 ETKIVINQFSRVVQHERCSFFGNVTLGSSVS----------L------------SELRQLYHVVVLAYGAES 119 (334)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~~~~~~~v~~~v~----------~------------~~~~~~yd~lIlATGs~~ 119 (334)
...++...+.+...+.|++++.++.+..-.. . +...+.++.||+|||...
T Consensus 102 d~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 102 DSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred cHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 1234455566666777899887765421110 0 012357999999999853
No 97
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.55 E-value=5.3e-07 Score=81.11 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=35.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
...+|+||||||||++||..|++.+ .+|+|+|+.+.+|+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G--~~V~vlEk~~~~Gg 58 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNG--LKVCVLERSLAFGG 58 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 4579999999999999999999997 99999999987653
No 98
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.55 E-value=1.3e-06 Score=64.11 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=54.1
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
+|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.+++.||++++++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--~~vtli~~~~~~~--------~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~ 64 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--KEVTLIERSDRLL--------PG--FDPDAAKILEEYLRKRGVEVHTNTKVK 64 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--SEEEEEESSSSSS--------TT--SSHHHHHHHHHHHHHTTEEEEESEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC--cEEEEEeccchhh--------hh--cCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 6899999999999999999987 9999999998753 21 134677788888899999999998875
No 99
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.54 E-value=5.5e-07 Score=82.10 Aligned_cols=98 Identities=21% Similarity=0.171 Sum_probs=64.8
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-------------------------------c---c-
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-------------------------------G---V- 64 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-------------------------------~---~- 64 (334)
++|+|||||++|+++|..|++.+ .+|+|+|+.+.++..+.. + .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKG--LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 47999999999999999999987 999999998654321100 0 0
Q ss_pred -CCC-C---cchhHHHHHHHHHhhcCCcEEEeCeEEce--------EEecc--cceeccCeEEEeccCCC
Q 019876 65 -APD-H---PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLS--ELRQLYHVVVLAYGAES 119 (334)
Q Consensus 65 -~p~-~---~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~v~~~--~~~~~yd~lIlATGs~~ 119 (334)
.+. . .....+...+.+.+.+.|++++.++.+.. .+.+. ...+.+|.||+|+|.++
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 000 0 11224555666666778899887766531 12222 23468999999999853
No 100
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.51 E-value=8.5e-07 Score=85.09 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=66.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc----------ccCCCCc------------------
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS----------GVAPDHP------------------ 69 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~----------~~~p~~~------------------ 69 (334)
..++|+||||||||.+||..|++.| ++|.|+|+.+.+|..... .+.|.+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G--~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcC--CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 3589999999999999999999998 999999998765431110 0011110
Q ss_pred ------------c-hhHHHHHHHHHhhcCCcEEEeCeEEceEEecc----------cceeccCeEEEeccCCC
Q 019876 70 ------------E-TKIVINQFSRVVQHERCSFFGNVTLGSSVSLS----------ELRQLYHVVVLAYGAES 119 (334)
Q Consensus 70 ------------~-~~~~~~~~~~~~~~~~i~~~~~~~v~~~v~~~----------~~~~~yd~lIlATGs~~ 119 (334)
. ...+-..+.+..++.|.+++.++.+......+ +.++.++.||.|+|..+
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 0 11233345566677899988887764322111 12568999999999743
No 101
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.51 E-value=6.3e-07 Score=76.94 Aligned_cols=40 Identities=33% Similarity=0.323 Sum_probs=35.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~ 59 (334)
...+|+||||||+||+||++|++.+ .+|+|||++-.+||-
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g--~kV~i~E~~ls~GGG 68 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAG--LKVAIFERKLSFGGG 68 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCC--ceEEEEEeecccCCc
Confidence 3469999999999999999999997 999999998777543
No 102
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.47 E-value=1.5e-06 Score=84.13 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=74.0
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
.-+++++|||||+.|+..|..+++.| .+|||+|+.+.+ .|.+ .+++...+...+++.++++++++.+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG--~~VTiie~~~~i--------Lp~~--D~ei~~~~~~~l~~~gv~i~~~~~v~ 238 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALG--SKVTVVERGDRI--------LPGE--DPEISKELTKQLEKGGVKILLNTKVT 238 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCC--------CCcC--CHHHHHHHHHHHHhCCeEEEccceEE
Confidence 45789999999999999999999998 999999998864 2533 45788888888888889999888763
Q ss_pred e--------EEecccc---eeccCeEEEeccCCCCCCC
Q 019876 97 S--------SVSLSEL---RQLYHVVVLAYGAESDRAL 123 (334)
Q Consensus 97 ~--------~v~~~~~---~~~yd~lIlATGs~~p~~~ 123 (334)
. .+.++++ ...+|+|++|+|- .|+..
T Consensus 239 ~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR-~Pn~~ 275 (454)
T COG1249 239 AVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR-KPNTD 275 (454)
T ss_pred EEEecCCeEEEEEecCCCCEEEeeEEEEccCC-ccCCC
Confidence 2 2333333 3569999999998 56654
No 103
>PLN02463 lycopene beta cyclase
Probab=98.47 E-value=1.4e-06 Score=84.64 Aligned_cols=101 Identities=24% Similarity=0.258 Sum_probs=64.9
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC-----ccccc-----ccc-------CCC-----------
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-----FGLVR-----SGV-------APD----------- 67 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~-----gg~~~-----~~~-------~p~----------- 67 (334)
....++|+||||||||+++|..|.+.| ++|+|+|+.+.. ++.|. .++ .+.
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~G--l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~ 102 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAG--LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKK 102 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCC--CeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCc
Confidence 345689999999999999999999986 999999986531 22210 000 000
Q ss_pred ------C-cchhHHHHHHHHHhhcCCcEEEeCeEEc-------eEEecccc-eeccCeEEEeccCC
Q 019876 68 ------H-PETKIVINQFSRVVQHERCSFFGNVTLG-------SSVSLSEL-RQLYHVVVLAYGAE 118 (334)
Q Consensus 68 ------~-~~~~~~~~~~~~~~~~~~i~~~~~~~v~-------~~v~~~~~-~~~yd~lIlATGs~ 118 (334)
. .....+...+.+.+...|++++...... ..|..+++ .+.+|.||.|+|..
T Consensus 103 ~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 103 DLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred cccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 0 1122344555555666788886443221 12444555 46899999999985
No 104
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.46 E-value=9.9e-07 Score=76.01 Aligned_cols=42 Identities=36% Similarity=0.454 Sum_probs=33.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~ 61 (334)
...+|+||||||+|++||.+|++.+ ++|.+||++..+||...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g--~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAG--LKVAVIERKLSPGGGMW 57 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHT--S-EEEEESSSS-BTTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCC--CeEEEEecCCCCCcccc
Confidence 3479999999999999999999997 99999999988776543
No 105
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.43 E-value=1.5e-06 Score=83.49 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=30.8
Q ss_pred EEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 23 CVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 23 vIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
+|||||+||++||..+++.+ .+|+|+|+.+.+|+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G--~~V~llEk~~~~G~ 34 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREG--LSVLLLEKNKKIGK 34 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcC--CcEEEEecCccccc
Confidence 69999999999999999987 99999999887654
No 106
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.43 E-value=3.5e-07 Score=64.96 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=33.3
Q ss_pred EECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876 24 VVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (334)
Q Consensus 24 IIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~ 62 (334)
|||||++|+++|..|++.+ .+|+|+|+.+.+||.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g--~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--YRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--SEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHCC--CcEEEEecCcccCcceeE
Confidence 8999999999999999996 899999999999988754
No 107
>PRK06847 hypothetical protein; Provisional
Probab=98.40 E-value=2.8e-06 Score=80.58 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=32.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
++++|+|||||++|+++|..|++.+ ++|+|+|+.+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g--~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAG--IAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence 3579999999999999999999987 99999998754
No 108
>PLN02661 Putative thiazole synthesis
Probab=98.38 E-value=2.8e-06 Score=79.14 Aligned_cols=39 Identities=33% Similarity=0.475 Sum_probs=34.1
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
..+|+|||||++|+.||.+|.+. ++.+|+|+|+...+||
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~GG 130 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPGG 130 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCccccc
Confidence 57999999999999999999975 2599999999877654
No 109
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.38 E-value=3.3e-06 Score=81.88 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=34.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g 57 (334)
..++|+||||||||++||..|++.| ++|+|+|+.+.++
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G--~~V~llEr~~~~g 41 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREG--AQVLVIERGNSAG 41 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCC--CeEEEEEcCCCCC
Confidence 4589999999999999999999997 9999999986543
No 110
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.37 E-value=2.8e-06 Score=81.10 Aligned_cols=96 Identities=20% Similarity=0.269 Sum_probs=61.6
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc-------------------------CCCC-------
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------------------------APDH------- 68 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~-------------------------~p~~------- 68 (334)
+|+||||||||+++|..|.+.+ .+|+|+|+.+..++...+++ .+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g--~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPG--LRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTA 78 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCc
Confidence 5899999999999999999886 99999998865443211110 0110
Q ss_pred ---cchhHHHHHHHHHhhcCCcEEEeCeEEce--------EEecccc-eeccCeEEEeccCC
Q 019876 69 ---PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE 118 (334)
Q Consensus 69 ---~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~v~~~~~-~~~yd~lIlATGs~ 118 (334)
.....+...+.+.+...+++++.+..+.. .+...++ .+.++.||.|+|..
T Consensus 79 ~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~ 140 (388)
T TIGR01790 79 YGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFG 140 (388)
T ss_pred eeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCc
Confidence 01123445555555666787765433221 1333344 46899999999985
No 111
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.37 E-value=3.5e-06 Score=81.95 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=67.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
.+++|+|||+|++|+.+|..+++.+ .+|+++++.+.+. |.. ..++...+.+.+++.|++++.+..+..
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~~--~~~~~~~~~~~l~~~GI~i~~~~~V~~ 223 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLG--SKVTVLDAASTIL--------PRE--EPSVAALAKQYMEEDGITFLLNAHTTE 223 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCccC--------CCC--CHHHHHHHHHHHHHcCCEEEcCCEEEE
Confidence 3579999999999999999999986 8999999987542 222 234555666778888999998865421
Q ss_pred ------E--EecccceeccCeEEEeccCCCCCC
Q 019876 98 ------S--VSLSELRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 ------~--v~~~~~~~~yd~lIlATGs~~p~~ 122 (334)
. +..++.+++||.||+|+|. .|..
T Consensus 224 i~~~~~~v~v~~~g~~i~~D~viva~G~-~p~~ 255 (438)
T PRK07251 224 VKNDGDQVLVVTEDETYRFDALLYATGR-KPNT 255 (438)
T ss_pred EEecCCEEEEEECCeEEEcCEEEEeeCC-CCCc
Confidence 1 2222334689999999998 4654
No 112
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.29 E-value=5.7e-06 Score=79.43 Aligned_cols=34 Identities=47% Similarity=0.653 Sum_probs=31.2
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
++|+||||||||++||..|++.| ++|+|+|+.+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G--~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAG--IQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--CcEEEEecCCC
Confidence 58999999999999999999997 99999998743
No 113
>PRK10015 oxidoreductase; Provisional
Probab=98.29 E-value=6e-06 Score=80.07 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=33.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
..++|+||||||||++||..|++.| ++|+|+|+.+.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G--~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAG--LDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCC
Confidence 3579999999999999999999997 999999998654
No 114
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.27 E-value=2.7e-06 Score=85.55 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=36.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~ 60 (334)
...+|||||+|++|++||..+++.+ .+|+|+|+.+..||..
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G--~~v~llEk~~~~gG~~ 48 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLG--LDVVVLEKEPVFGGTT 48 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcc
Confidence 3569999999999999999999987 8999999998777654
No 115
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.27 E-value=7.1e-06 Score=80.56 Aligned_cols=91 Identities=13% Similarity=0.173 Sum_probs=67.5
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceE
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 98 (334)
.++|+|||+|++|+.+|..|++.+ .+|+|+++.+.+. |.+ ..++...+.+.+++.||+++.++.+...
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g--~~Vtli~~~~~il--------~~~--~~~~~~~l~~~l~~~gI~i~~~~~v~~i 247 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFG--VEVTVVEAADRIL--------PTE--DAELSKEVARLLKKLGVRVVTGAKVLGL 247 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CeEEEEEecCccC--------CcC--CHHHHHHHHHHHHhcCCEEEeCcEEEEE
Confidence 579999999999999999999987 8999999886531 322 2356666777788889999988755211
Q ss_pred ----------Eecccc---eeccCeEEEeccCCCCCC
Q 019876 99 ----------VSLSEL---RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 99 ----------v~~~~~---~~~yd~lIlATGs~~p~~ 122 (334)
+...++ .++||.||+|+|. .|..
T Consensus 248 ~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~-~p~~ 283 (472)
T PRK05976 248 TLKKDGGVLIVAEHNGEEKTLEADKVLVSVGR-RPNT 283 (472)
T ss_pred EEecCCCEEEEEEeCCceEEEEeCEEEEeeCC-ccCC
Confidence 111122 3689999999999 4654
No 116
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.27 E-value=6.7e-06 Score=80.44 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=68.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
..++++|||+|++|+.+|..|++.+ .+|+++++.+.+. |.. ..++...+.+.+++.|++++.++.+..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~~--~~~~~~~~~~~l~~~gi~i~~~~~v~~ 236 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLG--SKVTVIEMLDRIL--------PGE--DAEVSKVVAKALKKKGVKILTNTKVTA 236 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCCCC--------CCC--CHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 3579999999999999999999987 8999999987542 221 234556667778888999998876531
Q ss_pred ------E--Eecccc---eeccCeEEEeccCCCCCCC
Q 019876 98 ------S--VSLSEL---RQLYHVVVLAYGAESDRAL 123 (334)
Q Consensus 98 ------~--v~~~~~---~~~yd~lIlATGs~~p~~~ 123 (334)
. +...++ .+++|.||+|+|. .|...
T Consensus 237 i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~-~p~~~ 272 (461)
T TIGR01350 237 VEKNDDQVVYENKGGETETLTGEKVLVAVGR-KPNTE 272 (461)
T ss_pred EEEeCCEEEEEEeCCcEEEEEeCEEEEecCC-cccCC
Confidence 1 222233 4689999999998 46543
No 117
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.26 E-value=5.9e-06 Score=79.18 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=33.0
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
+++|+||||||+|+++|..|++.+++++|+|+|+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 3689999999999999999999876799999998753
No 118
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.24 E-value=1.3e-05 Score=74.94 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=30.2
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
+|+|||||.+|+++|.+|++.+ .+|+|+|++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G--~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG--HSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT--SEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--CeEEEEeecc
Confidence 6999999999999999999987 9999999983
No 119
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.24 E-value=1.1e-05 Score=78.95 Aligned_cols=92 Identities=14% Similarity=0.215 Sum_probs=67.9
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 97 (334)
.++++|||+|++|+.+|..|++.+ .+|+++++.+.+. |.+ ..++...+.+.++..||+++.++.+..
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~V~~i 233 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLG--SEVTILQRSDRLL--------PRE--EPEISAAVEEALAEEGIEVVTSAQVKAV 233 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCcCC--------Ccc--CHHHHHHHHHHHHHcCCEEEcCcEEEEE
Confidence 479999999999999999999987 8999999886542 321 234556677778888999998875421
Q ss_pred -------EEecc----cceeccCeEEEeccCCCCCCC
Q 019876 98 -------SVSLS----ELRQLYHVVVLAYGAESDRAL 123 (334)
Q Consensus 98 -------~v~~~----~~~~~yd~lIlATGs~~p~~~ 123 (334)
.+.+. ..++++|.||+|+|. .|...
T Consensus 234 ~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~-~p~~~ 269 (463)
T TIGR02053 234 SVRGGGKIITVEKPGGQGEVEADELLVATGR-RPNTD 269 (463)
T ss_pred EEcCCEEEEEEEeCCCceEEEeCEEEEeECC-CcCCC
Confidence 12221 124689999999998 46553
No 120
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.23 E-value=9.7e-06 Score=77.24 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=67.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
..++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +.. ....+...+.+.+++.|++++.++.+..
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g--~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 208 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAG--KAVTLVDNAASLL--------ASL-MPPEVSSRLQHRLTEMGVHLLLKSQLQG 208 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCccc--------chh-CCHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 4579999999999999999999987 8999999876542 111 1234556677778888999988766531
Q ss_pred --------EEecccc-eeccCeEEEeccCCCCC
Q 019876 98 --------SVSLSEL-RQLYHVVVLAYGAESDR 121 (334)
Q Consensus 98 --------~v~~~~~-~~~yd~lIlATGs~~p~ 121 (334)
.+.+.++ .+++|.||+|+|. .|.
T Consensus 209 i~~~~~~~~v~~~~g~~i~~D~vI~a~G~-~p~ 240 (377)
T PRK04965 209 LEKTDSGIRATLDSGRSIEVDAVIAAAGL-RPN 240 (377)
T ss_pred EEccCCEEEEEEcCCcEEECCEEEECcCC-Ccc
Confidence 1333333 3689999999998 454
No 121
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.23 E-value=1.1e-05 Score=78.92 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=68.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
.+++++|||+|++|+.+|..+.+.+ .+|+++++.+.+. |.. ..++...+.+.+++.||++++++.+..
T Consensus 169 ~~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~~ll--------~~~--d~e~~~~l~~~L~~~GI~i~~~~~V~~ 236 (458)
T PRK06912 169 IPSSLLIVGGGVIGCEFASIYSRLG--TKVTIVEMAPQLL--------PGE--DEDIAHILREKLENDGVKIFTGAALKG 236 (458)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCcC--------ccc--cHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 3579999999999999999999986 8999999876542 322 245666777778888999998876531
Q ss_pred ------EEecc-cc---eeccCeEEEeccCCCCCC
Q 019876 98 ------SVSLS-EL---RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 ------~v~~~-~~---~~~yd~lIlATGs~~p~~ 122 (334)
.+.+. ++ +++||.||+|+|. .|+.
T Consensus 237 i~~~~~~v~~~~~g~~~~i~~D~vivA~G~-~p~~ 270 (458)
T PRK06912 237 LNSYKKQALFEYEGSIQEVNAEFVLVSVGR-KPRV 270 (458)
T ss_pred EEEcCCEEEEEECCceEEEEeCEEEEecCC-ccCC
Confidence 12221 12 3689999999998 4654
No 122
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.23 E-value=4.7e-06 Score=86.45 Aligned_cols=36 Identities=28% Similarity=0.531 Sum_probs=32.8
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
|+|+||||||||+++|..|++.+++++|+|+|+.+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999999865699999999865
No 123
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.22 E-value=8.3e-06 Score=78.27 Aligned_cols=93 Identities=19% Similarity=0.215 Sum_probs=67.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
..++++|||+|+.|+.+|..|++.+ .+|+|+++.+.+.+.. ....+...+.+.+++.||+++++..+..
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l~~~---------~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 211 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRR--CKVTVIELAATVMGRN---------APPPVQRYLLQRHQQAGVRILLNNAIEH 211 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCcchhhh---------cCHHHHHHHHHHHHHCCCEEEeCCeeEE
Confidence 3579999999999999999999987 8999999877542211 1234555666777788999998876531
Q ss_pred -------EEecccc-eeccCeEEEeccCCCCCC
Q 019876 98 -------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 -------~v~~~~~-~~~yd~lIlATGs~~p~~ 122 (334)
.+.+.++ .+.+|.||+|+|. .|+.
T Consensus 212 i~~~~~~~v~l~~g~~i~aD~Vv~a~G~-~pn~ 243 (396)
T PRK09754 212 VVDGEKVELTLQSGETLQADVVIYGIGI-SAND 243 (396)
T ss_pred EEcCCEEEEEECCCCEEECCEEEECCCC-Chhh
Confidence 1233333 3589999999998 4553
No 124
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=98.22 E-value=2.1e-06 Score=77.57 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=35.0
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..++.+|+|||||.+|+.+|..+.++.+.-+|.|+|+.+.
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 3467899999999999999999988876789999998754
No 125
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.21 E-value=1.2e-05 Score=78.77 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=68.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
..++++|||+|+.|+.+|..|++.+ .+|+++++.+.+. |.+ ..++...+.+.+++.|++++.+..+..
T Consensus 171 ~~~~vvVvGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--~~~~~~~l~~~l~~~gV~i~~~~~V~~ 238 (462)
T PRK06416 171 VPKSLVVIGGGYIGVEFASAYASLG--AEVTIVEALPRIL--------PGE--DKEISKLAERALKKRGIKIKTGAKAKK 238 (462)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCCcC--------CcC--CHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 3579999999999999999999987 8999999987642 321 235666777778888999998876521
Q ss_pred --------EEeccc----ceeccCeEEEeccCCCCCC
Q 019876 98 --------SVSLSE----LRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~~~----~~~~yd~lIlATGs~~p~~ 122 (334)
.+...+ ..++||.||+|+|. .|..
T Consensus 239 i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~-~p~~ 274 (462)
T PRK06416 239 VEQTDDGVTVTLEDGGKEETLEADYVLVAVGR-RPNT 274 (462)
T ss_pred EEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC-ccCC
Confidence 122222 23589999999998 4654
No 126
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.21 E-value=1e-05 Score=78.71 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=68.7
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 97 (334)
.++|+|||+|++|+.+|..+++.+ .+|+++++.+.+. +. ....++...+.+.+++.|++++.++.+..
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~-~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i 217 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLG--KNVRIIQLEDRIL--------PD-SFDKEITDVMEEELRENGVELHLNEFVKSL 217 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC--CcEEEEeCCcccC--------ch-hcCHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 579999999999999999999987 8999998876431 11 01245667777888889999998876532
Q ss_pred -------EEecccceeccCeEEEeccCCCCCC
Q 019876 98 -------SVSLSELRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 -------~v~~~~~~~~yd~lIlATGs~~p~~ 122 (334)
.+..++.++.+|.||+|+|. .|..
T Consensus 218 ~~~~~~~~v~~~~~~i~~d~vi~a~G~-~p~~ 248 (444)
T PRK09564 218 IGEDKVEGVVTDKGEYEADVVIVATGV-KPNT 248 (444)
T ss_pred ecCCcEEEEEeCCCEEEcCEEEECcCC-CcCH
Confidence 12233445789999999998 4553
No 127
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.19 E-value=1.9e-06 Score=83.62 Aligned_cols=40 Identities=38% Similarity=0.437 Sum_probs=32.9
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~ 62 (334)
+|||||||+||++||..+++.| .+|+|+|+.+.+||....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G--~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAG--AKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--S-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCC--CEEEEEECCccCCCcceE
Confidence 6999999999999999999997 999999999999887644
No 128
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.18 E-value=1.1e-05 Score=78.59 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=68.8
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 97 (334)
..+++|||+|+.|+.+|..|++.+ .+|+++++.+.+. +. ...++...+.+.+++.||+++.+..+..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g--~~Vtli~~~~~l~--------~~--~d~~~~~~l~~~l~~~gI~i~~~~~v~~i 215 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERG--LHPTLIHRSDKIN--------KL--MDADMNQPILDELDKREIPYRLNEEIDAI 215 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CcEEEEecccccc--------hh--cCHHHHHHHHHHHHhcCCEEEECCeEEEE
Confidence 479999999999999999999987 8999999876532 21 1235666777778888999998876532
Q ss_pred ---EEecccc-eeccCeEEEeccCCCCCC
Q 019876 98 ---SVSLSEL-RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 ---~v~~~~~-~~~yd~lIlATGs~~p~~ 122 (334)
.+.+.++ ..++|.|++|+|. .|+.
T Consensus 216 ~~~~v~~~~g~~~~~D~vl~a~G~-~pn~ 243 (438)
T PRK13512 216 NGNEVTFKSGKVEHYDMIIEGVGT-HPNS 243 (438)
T ss_pred eCCEEEECCCCEEEeCEEEECcCC-CcCh
Confidence 2333333 3589999999998 4654
No 129
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.18 E-value=1.4e-05 Score=77.44 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=67.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
..++|+|||+|++|+.+|..|++.+ .+|+++++.+.+.. +.+ ..++...+.+.+++.||+++.+..+..
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~~~-------~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~ 204 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERG--KNVTLIHRSERILN-------KLF--DEEMNQIVEEELKKHEINLRLNEEVDS 204 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEECCcccCc-------ccc--CHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 3579999999999999999999987 89999998765410 111 234556677778888999998876531
Q ss_pred -----E-Eecc-cceeccCeEEEeccCCCCCC
Q 019876 98 -----S-VSLS-ELRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 -----~-v~~~-~~~~~yd~lIlATGs~~p~~ 122 (334)
. +... ...++||.||+|+|. .|..
T Consensus 205 i~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~~ 235 (427)
T TIGR03385 205 IEGEERVKVFTSGGVYQADMVILATGI-KPNS 235 (427)
T ss_pred EecCCCEEEEcCCCEEEeCEEEECCCc-cCCH
Confidence 1 1222 234689999999998 4553
No 130
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.17 E-value=1.2e-05 Score=76.95 Aligned_cols=32 Identities=31% Similarity=0.538 Sum_probs=30.2
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
++|+||||||||+++|..|++.| ++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G--~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAG--IETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEECC
Confidence 48999999999999999999997 999999987
No 131
>PRK06834 hypothetical protein; Provisional
Probab=98.17 E-value=2e-05 Score=77.70 Aligned_cols=36 Identities=31% Similarity=0.526 Sum_probs=32.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
+..+|+||||||+|+++|..|++.| .+|+|+|+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G--~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAG--VDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence 3479999999999999999999997 99999998753
No 132
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.17 E-value=9.8e-06 Score=75.61 Aligned_cols=34 Identities=41% Similarity=0.648 Sum_probs=29.8
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
++|+|||||++|+++|..|++.| ++|+|||+.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG--IDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT--CEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcc--cccccchhccc
Confidence 58999999999999999999998 99999999854
No 133
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.16 E-value=1.2e-05 Score=76.66 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=32.6
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
..+|+||||||||+++|..|.+.| .+|+|+|+.+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSG--LRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCc
Confidence 468999999999999999999987 999999988654
No 134
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.16 E-value=9.8e-06 Score=77.88 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=31.3
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
.++|+|||||++|+++|..|.+.| ++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSG--LEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCC--CEEEEEcCCC
Confidence 368999999999999999999987 9999999875
No 135
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.16 E-value=1.8e-05 Score=77.77 Aligned_cols=93 Identities=17% Similarity=0.279 Sum_probs=67.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
.+++|+|||+|+.|+.+|..|++.+ .+|+|+++.+.+. |.. ..++...+.+.++..|++++.++.+..
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--d~~~~~~~~~~l~~~gi~i~~~~~v~~ 249 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLG--AEVTILEALPAFL--------AAA--DEQVAKEAAKAFTKQGLDIHLGVKIGE 249 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCCccC--------CcC--CHHHHHHHHHHHHHcCcEEEeCcEEEE
Confidence 3579999999999999999999987 8999999877531 221 235556666777788999998865421
Q ss_pred --------EEeccc-----ceeccCeEEEeccCCCCCCC
Q 019876 98 --------SVSLSE-----LRQLYHVVVLAYGAESDRAL 123 (334)
Q Consensus 98 --------~v~~~~-----~~~~yd~lIlATGs~~p~~~ 123 (334)
.+...+ ..+++|.|++|+|. .|...
T Consensus 250 i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~-~p~~~ 287 (475)
T PRK06327 250 IKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR-VPNTD 287 (475)
T ss_pred EEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC-ccCCC
Confidence 122222 23689999999998 46643
No 136
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.15 E-value=1.3e-05 Score=66.72 Aligned_cols=33 Identities=24% Similarity=0.611 Sum_probs=29.3
Q ss_pred EEECCchHHHHHHHHHhhc---CCCCeEEEEcCCCC
Q 019876 23 CVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRLPT 55 (334)
Q Consensus 23 vIIGaG~aGl~aA~~l~~~---~~~~~v~vie~~~~ 55 (334)
+|||+|++|++++..|.+. .+..+|+|||+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 6999999999999999988 35799999999765
No 137
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.15 E-value=2e-05 Score=76.77 Aligned_cols=92 Identities=13% Similarity=0.200 Sum_probs=69.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
.+++++|||+|+.|+.+|..|.+.+ .+|+|+++.+.+ .|.+ ..++...+.+.+++.|++++++..+..
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~--------l~~~--~~~~~~~l~~~l~~~gV~v~~~~~v~~ 224 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFG--SKVTILEAASLF--------LPRE--DRDIADNIATILRDQGVDIILNAHVER 224 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCC--------CCCc--CHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 4579999999999999999999987 999999987643 1332 235566677788888999998876531
Q ss_pred --------EEecccceeccCeEEEeccCCCCCC
Q 019876 98 --------SVSLSELRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~~~~~~~yd~lIlATGs~~p~~ 122 (334)
.+...+.+..+|.|++|+|. .|+.
T Consensus 225 i~~~~~~v~v~~~~g~i~~D~vl~a~G~-~pn~ 256 (441)
T PRK08010 225 ISHHENQVQVHSEHAQLAVDALLIASGR-QPAT 256 (441)
T ss_pred EEEcCCEEEEEEcCCeEEeCEEEEeecC-CcCC
Confidence 12223345689999999998 4654
No 138
>PRK06370 mercuric reductase; Validated
Probab=98.15 E-value=1.8e-05 Score=77.52 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=68.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
.+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. |.. ..++...+.+.++..|+++++++.+..
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~~G--~~Vtli~~~~~~l--------~~~--~~~~~~~l~~~l~~~GV~i~~~~~V~~ 237 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRRFG--SEVTVIERGPRLL--------PRE--DEDVAAAVREILEREGIDVRLNAECIR 237 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCCCC--------ccc--CHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 3579999999999999999999987 8999999887542 221 234556677778888999998865521
Q ss_pred --------EEec---c-cceeccCeEEEeccCCCCCC
Q 019876 98 --------SVSL---S-ELRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~---~-~~~~~yd~lIlATGs~~p~~ 122 (334)
.+.. . ...+++|.||+|+|. .|+.
T Consensus 238 i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~-~pn~ 273 (463)
T PRK06370 238 VERDGDGIAVGLDCNGGAPEITGSHILVAVGR-VPNT 273 (463)
T ss_pred EEEcCCEEEEEEEeCCCceEEEeCEEEECcCC-CcCC
Confidence 1222 1 124689999999998 4654
No 139
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.14 E-value=1.8e-05 Score=77.55 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=68.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
.+++++|||+|+.|+.+|..|++.+ .+|+|+++.+.+. |.. ..++...+.+.+++.||+++.++.+..
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~v~~ 238 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNYG--VDVTIVEFLDRAL--------PNE--DAEVSKEIAKQYKKLGVKILTGTKVES 238 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCcC--------Ccc--CHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 3579999999999999999999987 8999999876531 332 235666777888888999998876521
Q ss_pred --------EEecc--cc---eeccCeEEEeccCCCCCC
Q 019876 98 --------SVSLS--EL---RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~~--~~---~~~yd~lIlATGs~~p~~ 122 (334)
.+.+. ++ .+++|.||+|+|. .|..
T Consensus 239 i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~-~pn~ 275 (466)
T PRK07818 239 IDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF-APRV 275 (466)
T ss_pred EEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc-ccCC
Confidence 12221 22 3689999999998 4654
No 140
>PRK06184 hypothetical protein; Provisional
Probab=98.14 E-value=1.9e-05 Score=78.18 Aligned_cols=35 Identities=26% Similarity=0.501 Sum_probs=32.3
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..+|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~G--i~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRG--VSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCC
Confidence 478999999999999999999997 99999999754
No 141
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.14 E-value=7.9e-06 Score=77.64 Aligned_cols=89 Identities=20% Similarity=0.251 Sum_probs=70.0
Q ss_pred CeEEEECCchHHHHHHHHHhhcC-----------CCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcE
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAH-----------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCS 88 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~-----------~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~ 88 (334)
.+|+|+|||+.|+..|-.|...- .+.+|+|+|+.+.+ .|.+ ++++..+..+.+++.||+
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I--------Lp~~--~~~l~~~a~~~L~~~GV~ 225 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI--------LPMF--PPKLSKYAERALEKLGVE 225 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh--------ccCC--CHHHHHHHHHHHHHCCCE
Confidence 47999999999999999886542 12599999998864 3543 456788888999999999
Q ss_pred EEeCeEEce----EEecccce--eccCeEEEeccCC
Q 019876 89 FFGNVTLGS----SVSLSELR--QLYHVVVLAYGAE 118 (334)
Q Consensus 89 ~~~~~~v~~----~v~~~~~~--~~yd~lIlATGs~ 118 (334)
+.+++.|.. .++++++. ++++.+|.|+|..
T Consensus 226 v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 226 VLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred EEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCc
Confidence 999988742 35555443 8999999999984
No 142
>PRK14694 putative mercuric reductase; Provisional
Probab=98.14 E-value=2e-05 Score=77.39 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=67.1
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 97 (334)
+++++|||+|+.|+.+|..|++.+ .+|+++++...+ |. ...++...+.+.+++.||+++.+..+..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g--~~Vtlv~~~~~l---------~~--~~~~~~~~l~~~l~~~GI~v~~~~~v~~i 244 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLG--SRVTVLARSRVL---------SQ--EDPAVGEAIEAAFRREGIEVLKQTQASEV 244 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CeEEEEECCCCC---------CC--CCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 579999999999999999999987 899999864211 22 1235666777888888999998865531
Q ss_pred -------EEecccceeccCeEEEeccCCCCCC
Q 019876 98 -------SVSLSELRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 -------~v~~~~~~~~yd~lIlATGs~~p~~ 122 (334)
.+...+..+++|.||+|+|. .|+.
T Consensus 245 ~~~~~~~~v~~~~~~i~~D~vi~a~G~-~pn~ 275 (468)
T PRK14694 245 DYNGREFILETNAGTLRAEQLLVATGR-TPNT 275 (468)
T ss_pred EEcCCEEEEEECCCEEEeCEEEEccCC-CCCc
Confidence 12223345789999999998 4655
No 143
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.14 E-value=1.6e-05 Score=76.11 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=32.8
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
+++|+|||||++|+++|..|++.| ++|+|||+.+.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g--~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQG--IKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCC--CcEEEEeeCccc
Confidence 579999999999999999999987 999999998653
No 144
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.13 E-value=1.3e-05 Score=76.70 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=32.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
...+|+||||||+|+++|..|.+.| .+|+|+|+.+.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G--~~v~liE~~~~ 40 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAG--LSVALVEGREP 40 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCC--CEEEEEeCCCC
Confidence 4579999999999999999999997 99999999753
No 145
>PRK07236 hypothetical protein; Provisional
Probab=98.13 E-value=1e-05 Score=77.24 Aligned_cols=36 Identities=31% Similarity=0.471 Sum_probs=32.9
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..++|+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAG--WDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence 4589999999999999999999997 99999999763
No 146
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.13 E-value=2.1e-05 Score=76.73 Aligned_cols=91 Identities=12% Similarity=0.122 Sum_probs=68.6
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 97 (334)
+++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +.+ ..++...+.+.+++.||+++.++.+..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~~il--------~~~--d~~~~~~~~~~l~~~gI~i~~~~~v~~i 233 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLG--SETHLVIRHERVL--------RSF--DSMISETITEEYEKEGINVHKLSKPVKV 233 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCC--------ccc--CHHHHHHHHHHHHHcCCEEEcCCEEEEE
Confidence 579999999999999999999987 8999999886542 222 345666777788888999998865421
Q ss_pred --------EEecccc--eeccCeEEEeccCCCCCC
Q 019876 98 --------SVSLSEL--RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~~~~--~~~yd~lIlATGs~~p~~ 122 (334)
.+...++ ..++|.||+|+|. .|..
T Consensus 234 ~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~-~pn~ 267 (450)
T TIGR01421 234 EKTVEGKLVIHFEDGKSIDDVDELIWAIGR-KPNT 267 (450)
T ss_pred EEeCCceEEEEECCCcEEEEcCEEEEeeCC-CcCc
Confidence 1223333 3589999999998 4654
No 147
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.12 E-value=3e-06 Score=81.55 Aligned_cols=43 Identities=26% Similarity=0.466 Sum_probs=40.4
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~ 62 (334)
++|+|||||.+||+||..|.+.+|+.+++|||+.+..||++..
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 5899999999999999999999999999999999999998754
No 148
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.12 E-value=2.8e-05 Score=75.84 Aligned_cols=36 Identities=39% Similarity=0.550 Sum_probs=32.7
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
...++|+||||||||++||..|++.| ++|+|+|+.+
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G--~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGG--IETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence 35689999999999999999999997 9999999874
No 149
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.12 E-value=3.2e-06 Score=82.19 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=38.0
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~ 61 (334)
++|+|||||.|||+||..|.+.|++.+|+|+|+++.+||.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEE
Confidence 589999999999999999999865689999999999998764
No 150
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.11 E-value=1.6e-05 Score=75.26 Aligned_cols=29 Identities=38% Similarity=0.423 Sum_probs=25.6
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEc
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIID 51 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie 51 (334)
+|+|||||+||..||..+++.| .+|.|+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G--~~V~Lit 29 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMG--AKVLLIT 29 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----EEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEe
Confidence 6999999999999999999998 9999994
No 151
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.11 E-value=2.4e-05 Score=76.29 Aligned_cols=92 Identities=21% Similarity=0.157 Sum_probs=68.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
..++++|||+|+.|+.+|..+++.+ .+|+++++.+.+. +.+ ..++...+.+.+++.|++++.+..+..
T Consensus 165 ~~~~vvVIGgG~~g~E~A~~l~~~G--~~Vtli~~~~~~l--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~v~~ 232 (446)
T TIGR01424 165 LPKSILILGGGYIAVEFAGIWRGLG--VQVTLIYRGELIL--------RGF--DDDMRALLARNMEGRGIRIHPQTSLTS 232 (446)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEeCCCCC--------ccc--CHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 3578999999999999999999987 8999999876531 221 245666677778888999998875421
Q ss_pred --------EEecccc-eeccCeEEEeccCCCCCC
Q 019876 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~~~~-~~~yd~lIlATGs~~p~~ 122 (334)
.+...++ .+++|.||+|+|. .|..
T Consensus 233 i~~~~~~~~v~~~~g~~i~~D~viva~G~-~pn~ 265 (446)
T TIGR01424 233 ITKTDDGLKVTLSHGEEIVADVVLFATGR-SPNT 265 (446)
T ss_pred EEEcCCeEEEEEcCCcEeecCEEEEeeCC-CcCC
Confidence 1223233 3689999999998 4654
No 152
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.10 E-value=3.6e-06 Score=82.63 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=40.3
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 15 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~ 61 (334)
...+.++|+|||||.|||+||.+|...| .+|+|+|.++.+||.+.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G--~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFG--FDVLVLEARDRVGGRIY 55 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcC--CceEEEeccCCcCceeE
Confidence 3445689999999999999999999998 99999999999998764
No 153
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.09 E-value=2.6e-05 Score=74.68 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=32.3
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
.+|+|||||.+|+++|.+|+++.|+.+|+|+|+.+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 689999999999999999999844599999999753
No 154
>PLN02697 lycopene epsilon cyclase
Probab=98.09 E-value=2.9e-05 Score=76.93 Aligned_cols=100 Identities=21% Similarity=0.279 Sum_probs=61.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC---cccccc-----cc--------------CCCC-------
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLVRS-----GV--------------APDH------- 68 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~---gg~~~~-----~~--------------~p~~------- 68 (334)
..++|+||||||||+++|..|.+.+ ++|+|+|+.... +|.|.. ++ .+..
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~G--l~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~ 184 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGR 184 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCC--CcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccC
Confidence 4589999999999999999999987 999999975321 333310 00 0000
Q ss_pred ----cchhHHHHHHHHHhhcCCcEEEeCeEEce-------E-Eecc-cceeccCeEEEeccCCC
Q 019876 69 ----PETKIVINQFSRVVQHERCSFFGNVTLGS-------S-VSLS-ELRQLYHVVVLAYGAES 119 (334)
Q Consensus 69 ----~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-------~-v~~~-~~~~~yd~lIlATGs~~ 119 (334)
.....+...+.+.+...|+++........ . +... +..+.++.||.|+|..+
T Consensus 185 ~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 185 AYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 11123444555555667888744322211 1 1222 23468999999999854
No 155
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.08 E-value=2.7e-05 Score=76.15 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=68.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
.+++++|||+|+.|+.+|..+++.+ .+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gI~v~~~~~v~~ 241 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALG--VKVTLINTRDRLL--------SF--LDDEISDALSYHLRDSGVTIRHNEEVEK 241 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCcC--------Cc--CCHHHHHHHHHHHHHcCCEEEECCEEEE
Confidence 3589999999999999999999987 9999999887542 22 1245666777778888999998866531
Q ss_pred --------EEecccc-eeccCeEEEeccCCCCCC
Q 019876 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~~~~-~~~yd~lIlATGs~~p~~ 122 (334)
.+...++ .+++|.||+|+|. .|+.
T Consensus 242 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~~ 274 (461)
T PRK05249 242 VEGGDDGVIVHLKSGKKIKADCLLYANGR-TGNT 274 (461)
T ss_pred EEEeCCeEEEEECCCCEEEeCEEEEeecC-Cccc
Confidence 1222222 3689999999998 4654
No 156
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.08 E-value=2.9e-05 Score=77.43 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=32.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
..++|+|||||+||+.||..+++.| .+|.|+|+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G--~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMG--AKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcC--CcEEEEeccc
Confidence 3579999999999999999999997 9999999873
No 157
>PRK14727 putative mercuric reductase; Provisional
Probab=98.08 E-value=3.3e-05 Score=76.01 Aligned_cols=90 Identities=13% Similarity=0.156 Sum_probs=67.1
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 97 (334)
+++++|||+|+.|+.+|..+.+.+ .+|+++++.. + .+. ...++...+.+.+++.|++++++..+..
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G--~~Vtlv~~~~-~--------l~~--~d~~~~~~l~~~L~~~GV~i~~~~~V~~i 254 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLG--SRVTILARST-L--------LFR--EDPLLGETLTACFEKEGIEVLNNTQASLV 254 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CEEEEEEcCC-C--------CCc--chHHHHHHHHHHHHhCCCEEEcCcEEEEE
Confidence 479999999999999999999987 8999998642 1 122 1335666777788888999998876521
Q ss_pred -------EEecccceeccCeEEEeccCCCCCC
Q 019876 98 -------SVSLSELRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 -------~v~~~~~~~~yd~lIlATGs~~p~~ 122 (334)
.+...+.++.+|.||+|+|. .|+.
T Consensus 255 ~~~~~~~~v~~~~g~i~aD~VlvA~G~-~pn~ 285 (479)
T PRK14727 255 EHDDNGFVLTTGHGELRAEKLLISTGR-HANT 285 (479)
T ss_pred EEeCCEEEEEEcCCeEEeCEEEEccCC-CCCc
Confidence 12233445689999999998 4654
No 158
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.08 E-value=3.2e-05 Score=75.85 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=67.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
.+++|+|||+|+.|+.+|..+.+.+ .+|+++++.+.+. |.+ ..++...+.+.+++.||+++.++.+..
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G--~~Vtlie~~~~il--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~V~~ 240 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLG--AQVTVVEYLDRIC--------PGT--DTETAKTLQKALTKQGMKFKLGSKVTG 240 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCCCCC--------CCC--CHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence 4689999999999999999999987 8999999876541 322 234556677778888999998865421
Q ss_pred --------EEecc---c---ceeccCeEEEeccCCCCCC
Q 019876 98 --------SVSLS---E---LRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~~---~---~~~~yd~lIlATGs~~p~~ 122 (334)
.+.+. + ..+++|.|++|+|. .|..
T Consensus 241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~-~pn~ 278 (466)
T PRK06115 241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGR-RPYT 278 (466)
T ss_pred EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCC-cccc
Confidence 11221 1 23589999999998 4654
No 159
>PRK06116 glutathione reductase; Validated
Probab=98.07 E-value=3.5e-05 Score=75.19 Aligned_cols=92 Identities=15% Similarity=0.171 Sum_probs=68.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
.+++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +.+ ..++...+.+.+++.|++++.++.+..
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~--~~~~~~~l~~~L~~~GV~i~~~~~V~~ 233 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNGLG--SETHLFVRGDAPL--------RGF--DPDIRETLVEEMEKKGIRLHTNAVPKA 233 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCc--------ccc--CHHHHHHHHHHHHHCCcEEECCCEEEE
Confidence 3579999999999999999999987 8999999876531 221 235666777778888999998876521
Q ss_pred ---------EEecccc-eeccCeEEEeccCCCCCC
Q 019876 98 ---------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 ---------~v~~~~~-~~~yd~lIlATGs~~p~~ 122 (334)
.+...++ .+++|.||+|+|. .|..
T Consensus 234 i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~-~p~~ 267 (450)
T PRK06116 234 VEKNADGSLTLTLEDGETLTVDCLIWAIGR-EPNT 267 (450)
T ss_pred EEEcCCceEEEEEcCCcEEEeCEEEEeeCC-CcCC
Confidence 1222222 3589999999998 4654
No 160
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.06 E-value=4.6e-06 Score=82.18 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=39.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~ 62 (334)
+.++|||||||++||+||.+|++.| ++|+|+|+++.+||..+.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G--~~V~VlE~~~~~GG~a~t 44 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAG--LKVTVLEKNDRVGGRART 44 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCC--CEEEEEEecCCCCcceEE
Confidence 4689999999999999999999998 999999999999997644
No 161
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.06 E-value=2.4e-05 Score=74.76 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=32.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
..++|+|||||++|+++|..|.+.| ++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G--~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHG--FSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCC--CEEEEEcCCC
Confidence 4579999999999999999999987 9999999874
No 162
>PRK13748 putative mercuric reductase; Provisional
Probab=98.05 E-value=3.2e-05 Score=77.60 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=68.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
.+++++|||+|+.|+.+|..|.+.+ .+|+|+++... .+.+ ..++...+.+.+++.||+++.+..+..
T Consensus 269 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtli~~~~~---------l~~~--d~~~~~~l~~~l~~~gI~i~~~~~v~~ 335 (561)
T PRK13748 269 IPERLAVIGSSVVALELAQAFARLG--SKVTILARSTL---------FFRE--DPAIGEAVTAAFRAEGIEVLEHTQASQ 335 (561)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEecCcc---------cccc--CHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 3579999999999999999999987 89999987431 1221 245667777888888999998876531
Q ss_pred --------EEecccceeccCeEEEeccCCCCCC
Q 019876 98 --------SVSLSELRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~~~~~~~yd~lIlATGs~~p~~ 122 (334)
.+...+..+.+|.||+|+|. .|+.
T Consensus 336 i~~~~~~~~v~~~~~~i~~D~vi~a~G~-~pn~ 367 (561)
T PRK13748 336 VAHVDGEFVLTTGHGELRADKLLVATGR-APNT 367 (561)
T ss_pred EEecCCEEEEEecCCeEEeCEEEEccCC-CcCC
Confidence 12223345789999999998 4665
No 163
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.04 E-value=3.9e-05 Score=75.09 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=32.4
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
..+|+|||||.+|+++|.+|++.+|+.+|+|+|++.
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 468999999999999999999985569999999874
No 164
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.04 E-value=3.7e-05 Score=74.08 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=31.1
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
.++|+|||+|++|+.+|..+.+.+ .+|+||++..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g--~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAG--KRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCC--CcEEEEECCC
Confidence 468999999999999999999997 9999999863
No 165
>PLN02507 glutathione reductase
Probab=98.03 E-value=4e-05 Score=75.80 Aligned_cols=91 Identities=20% Similarity=0.169 Sum_probs=68.0
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 97 (334)
.++++|||+|+.|+.+|..+++.+ .+|+|+++.+.+. +. ...++...+.+.+++.||+++.++.+..
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~GI~i~~~~~V~~i 270 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMG--ATVDLFFRKELPL--------RG--FDDEMRAVVARNLEGRGINLHPRTNLTQL 270 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEecCCcC--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 579999999999999999999987 8999999876531 22 1245666677778888999998876531
Q ss_pred -------EEecccc-eeccCeEEEeccCCCCCC
Q 019876 98 -------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 -------~v~~~~~-~~~yd~lIlATGs~~p~~ 122 (334)
.+...++ .+++|.|++|+|. .|..
T Consensus 271 ~~~~~~~~v~~~~g~~i~~D~vl~a~G~-~pn~ 302 (499)
T PLN02507 271 TKTEGGIKVITDHGEEFVADVVLFATGR-APNT 302 (499)
T ss_pred EEeCCeEEEEECCCcEEEcCEEEEeecC-CCCC
Confidence 1222233 3689999999998 4654
No 166
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.02 E-value=4e-05 Score=72.96 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=30.1
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
.+|+|||||++|+++|..|++.| ++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G--~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKG--IKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCC--CeEEEecCC
Confidence 58999999999999999999987 999999975
No 167
>PRK08244 hypothetical protein; Provisional
Probab=98.02 E-value=3.5e-05 Score=76.11 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=31.6
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
.+|+||||||+|+++|..|.+.| ++|+|||+.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G--~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAG--VKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence 68999999999999999999997 99999998754
No 168
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.01 E-value=5.1e-05 Score=74.45 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=68.0
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 97 (334)
+++++|||+|+.|+.+|..|++.+ .+|+++++.+.+. |.+ ..++...+.+.+++.||+++.+..+..
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--d~~~~~~l~~~L~~~gV~i~~~~~v~~v 244 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELG--VKVTLVSSRDRVL--------PGE--DADAAEVLEEVFARRGMTVLKRSRAESV 244 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCcCC--------CCC--CHHHHHHHHHHHHHCCcEEEcCCEEEEE
Confidence 479999999999999999999987 8999999876532 322 234556777788888999998865421
Q ss_pred -------EEecccc-eeccCeEEEeccCCCCCCC
Q 019876 98 -------SVSLSEL-RQLYHVVVLAYGAESDRAL 123 (334)
Q Consensus 98 -------~v~~~~~-~~~yd~lIlATGs~~p~~~ 123 (334)
.+...++ ++++|.||+|+|. .|...
T Consensus 245 ~~~~~~~~v~~~~g~~l~~D~vl~a~G~-~pn~~ 277 (466)
T PRK07845 245 ERTGDGVVVTLTDGRTVEGSHALMAVGS-VPNTA 277 (466)
T ss_pred EEeCCEEEEEECCCcEEEecEEEEeecC-CcCCC
Confidence 1222222 3589999999998 46553
No 169
>PRK07588 hypothetical protein; Provisional
Probab=98.01 E-value=4.4e-05 Score=72.98 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=31.4
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
++|+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYG--HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CceEEEeCCCC
Confidence 58999999999999999999987 99999998754
No 170
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.00 E-value=4.8e-05 Score=76.02 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=33.4
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
...++|+||||||+|+++|..|.+.| ++|+|||+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G--~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYG--VRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence 35679999999999999999999987 99999999864
No 171
>PRK11445 putative oxidoreductase; Provisional
Probab=98.00 E-value=5.4e-05 Score=71.44 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=29.8
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
+++|+||||||||+++|..|++. ++|+|+|+.+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~---~~V~liE~~~ 33 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK---MKVIAIDKKH 33 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc---CCEEEEECCC
Confidence 36899999999999999999875 7999999876
No 172
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.98 E-value=4.6e-05 Score=75.07 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=66.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc-
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG- 96 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~- 96 (334)
.+.+++|||+|+.|+.+|..|++.+ .+|+++++. .+ .|.+ ..++...+.+.+++.||+++++..+.
T Consensus 179 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~-~~--------l~~~--d~~~~~~l~~~L~~~gV~i~~~~~v~~ 245 (484)
T TIGR01438 179 CPGKTLVVGASYVALECAGFLAGIG--LDVTVMVRS-IL--------LRGF--DQDCANKVGEHMEEHGVKFKRQFVPIK 245 (484)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhC--CcEEEEEec-cc--------cccc--CHHHHHHHHHHHHHcCCEEEeCceEEE
Confidence 3468999999999999999999987 899999863 22 1322 34566677788888899999886431
Q ss_pred -------eEEecccc----eeccCeEEEeccCCCCCC
Q 019876 97 -------SSVSLSEL----RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 97 -------~~v~~~~~----~~~yd~lIlATGs~~p~~ 122 (334)
..+...+. ++++|.||+|+|. .|..
T Consensus 246 v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~-~pn~ 281 (484)
T TIGR01438 246 VEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR-DACT 281 (484)
T ss_pred EEEcCCeEEEEEecCCcceEEEeCEEEEEecC-CcCC
Confidence 12333222 4689999999998 4654
No 173
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.97 E-value=4.3e-05 Score=72.96 Aligned_cols=91 Identities=20% Similarity=0.241 Sum_probs=69.7
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc-e
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-S 97 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-~ 97 (334)
.++++|||+|++|+.+|.++++.| .+|+++|..+.+++.... .++...+.+.++..+|+++.+..+. .
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G--~~v~l~e~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~~i 204 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRG--KKVTLIEAADRLGGQLLD---------PEVAEELAELLEKYGVELLLGTKVVGV 204 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEcccccchhhhh---------HHHHHHHHHHHHHCCcEEEeCCceEEE
Confidence 579999999999999999999998 999999999887654421 3566677888888899998776642 1
Q ss_pred E----------Eecc-cceeccCeEEEeccCCCCC
Q 019876 98 S----------VSLS-ELRQLYHVVVLAYGAESDR 121 (334)
Q Consensus 98 ~----------v~~~-~~~~~yd~lIlATGs~~p~ 121 (334)
. +... ....++|.+++++|. .|.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~-~p~ 238 (415)
T COG0446 205 EGKGNTLVVERVVGIDGEEIKADLVIIGPGE-RPN 238 (415)
T ss_pred EcccCcceeeEEEEeCCcEEEeeEEEEeecc-ccc
Confidence 1 1222 223579999999999 464
No 174
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.97 E-value=4e-05 Score=79.84 Aligned_cols=93 Identities=14% Similarity=0.172 Sum_probs=68.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
..++++|||+|+.|+.+|..|++.+ .+|+|+++.+.+. +. .........+.+.+++.||+++++..+..
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L~~~G--~~Vtvv~~~~~ll--------~~-~ld~~~~~~l~~~l~~~GV~v~~~~~v~~ 207 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGLQNLG--MDVSVIHHAPGLM--------AK-QLDQTAGRLLQRELEQKGLTFLLEKDTVE 207 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEccCCchh--------hh-hcCHHHHHHHHHHHHHcCCEEEeCCceEE
Confidence 3578999999999999999999997 8999999876531 11 11234555667778888999998875421
Q ss_pred --------EEecccc-eeccCeEEEeccCCCCCC
Q 019876 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~~~~-~~~yd~lIlATGs~~p~~ 122 (334)
.+.+.++ .+++|.||+|+|. .|+.
T Consensus 208 i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~-~Pn~ 240 (785)
T TIGR02374 208 IVGATKADRIRFKDGSSLEADLIVMAAGI-RPND 240 (785)
T ss_pred EEcCCceEEEEECCCCEEEcCEEEECCCC-CcCc
Confidence 2333444 4689999999998 4654
No 175
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.97 E-value=5.6e-05 Score=73.21 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=67.5
Q ss_pred CeEEEECCchHHHHHHHHHhhcC------------CCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCc
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERC 87 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~------------~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i 87 (334)
++++|||+|+.|+.+|..|.... ++.+|+|+++.+.+. |.+ .+.+.....+.+++.||
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll--------~~~--~~~~~~~~~~~L~~~gV 243 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL--------GSF--DQALRKYGQRRLRRLGV 243 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc--------ccC--CHHHHHHHHHHHHHCCC
Confidence 48999999999999999887521 248999999876542 221 24566777888889999
Q ss_pred EEEeCeEEce----EEecccc-eeccCeEEEeccCCCCC
Q 019876 88 SFFGNVTLGS----SVSLSEL-RQLYHVVVLAYGAESDR 121 (334)
Q Consensus 88 ~~~~~~~v~~----~v~~~~~-~~~yd~lIlATGs~~p~ 121 (334)
+++.+..+.. .+.++++ ++++|.+|+|+|. .|.
T Consensus 244 ~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~-~~~ 281 (424)
T PTZ00318 244 DIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGV-GPG 281 (424)
T ss_pred EEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCC-CCc
Confidence 9998876632 3445444 4689999999997 454
No 176
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.96 E-value=4.3e-05 Score=79.93 Aligned_cols=93 Identities=14% Similarity=0.168 Sum_probs=68.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
..++++|||+|+.|+.+|..|++.+ .+|+|++..+.+. |. ....+....+.+.+++.||+++++..+..
T Consensus 144 ~~k~vvVIGgG~iGlE~A~~L~~~G--~~VtvVe~~~~ll--------~~-~ld~~~~~~l~~~L~~~GV~v~~~~~v~~ 212 (847)
T PRK14989 144 RSKRGAVVGGGLLGLEAAGALKNLG--VETHVIEFAPMLM--------AE-QLDQMGGEQLRRKIESMGVRVHTSKNTLE 212 (847)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeccccch--------hh-hcCHHHHHHHHHHHHHCCCEEEcCCeEEE
Confidence 3578999999999999999999997 8999999876531 21 12345566777788889999998875421
Q ss_pred ----------EEecccc-eeccCeEEEeccCCCCCC
Q 019876 98 ----------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 ----------~v~~~~~-~~~yd~lIlATGs~~p~~ 122 (334)
.+.+.++ .+++|.||+|+|. .|+.
T Consensus 213 I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~-rPn~ 247 (847)
T PRK14989 213 IVQEGVEARKTMRFADGSELEVDFIVFSTGI-RPQD 247 (847)
T ss_pred EEecCCCceEEEEECCCCEEEcCEEEECCCc-ccCc
Confidence 1223333 3689999999998 4654
No 177
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.95 E-value=1.7e-05 Score=75.42 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=55.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc--ccCCCCc-chhHHHHHHHHHhhcCCcEEEeCeE
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GVAPDHP-ETKIVINQFSRVVQHERCSFFGNVT 94 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~--~~~p~~~-~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (334)
..++++|||||+||++||..|+..| ++++|+|+++.+||.+.- .++|... ..=-+...+.+...+.++++++...
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G--~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~Tyae 200 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMG--FKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAE 200 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcC--CeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeee
Confidence 4579999999999999999999998 999999999999987532 2333220 0112333455666677788877766
Q ss_pred E
Q 019876 95 L 95 (334)
Q Consensus 95 v 95 (334)
|
T Consensus 201 V 201 (622)
T COG1148 201 V 201 (622)
T ss_pred e
Confidence 5
No 178
>PRK07846 mycothione reductase; Reviewed
Probab=97.94 E-value=8.8e-05 Score=72.45 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=64.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
.+++++|||+|+.|+.+|..|++.+ .+|+++++.+.+. |.+ ..++...+.+.+ +.+++++.+..+..
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~~~ll--------~~~--d~~~~~~l~~l~-~~~v~i~~~~~v~~ 231 (451)
T PRK07846 165 LPESLVIVGGGFIAAEFAHVFSALG--VRVTVVNRSGRLL--------RHL--DDDISERFTELA-SKRWDVRLGRNVVG 231 (451)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCccc--------ccc--CHHHHHHHHHHH-hcCeEEEeCCEEEE
Confidence 3579999999999999999999987 8999999877542 221 234444454444 35799888865521
Q ss_pred --------EEecccc-eeccCeEEEeccCCCCCCC
Q 019876 98 --------SVSLSEL-RQLYHVVVLAYGAESDRAL 123 (334)
Q Consensus 98 --------~v~~~~~-~~~yd~lIlATGs~~p~~~ 123 (334)
.+...++ .+++|.|++|+|. .|...
T Consensus 232 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~-~pn~~ 265 (451)
T PRK07846 232 VSQDGSGVTLRLDDGSTVEADVLLVATGR-VPNGD 265 (451)
T ss_pred EEEcCCEEEEEECCCcEeecCEEEEEECC-ccCcc
Confidence 1233233 3689999999998 46553
No 179
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.94 E-value=7.5e-05 Score=73.23 Aligned_cols=35 Identities=31% Similarity=0.316 Sum_probs=31.6
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
+++|+|||+|.||++||..+++.+ .+|+|+|+.+.
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G--~~V~liek~~~ 35 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKG--FDVTIIGPGIK 35 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 379999999999999999999987 99999999743
No 180
>PTZ00058 glutathione reductase; Provisional
Probab=97.93 E-value=7.5e-05 Score=74.66 Aligned_cols=91 Identities=14% Similarity=0.209 Sum_probs=67.4
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 97 (334)
+++|+|||+|+.|+.+|..+.+.+ .+|+++++.+.+. |.+ ..++...+.+.+++.||+++.+..+..
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G--~~Vtli~~~~~il--------~~~--d~~i~~~l~~~L~~~GV~i~~~~~V~~I 304 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLG--AESYIFARGNRLL--------RKF--DETIINELENDMKKNNINIITHANVEEI 304 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC--CcEEEEEeccccc--------ccC--CHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 689999999999999999999987 8999999876531 322 245666777778888999988876421
Q ss_pred --------EEec-ccc-eeccCeEEEeccCCCCCC
Q 019876 98 --------SVSL-SEL-RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~-~~~-~~~yd~lIlATGs~~p~~ 122 (334)
.+.. .+. .+++|.|++|+|. .|..
T Consensus 305 ~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr-~Pn~ 338 (561)
T PTZ00058 305 EKVKEKNLTIYLSDGRKYEHFDYVIYCVGR-SPNT 338 (561)
T ss_pred EecCCCcEEEEECCCCEEEECCEEEECcCC-CCCc
Confidence 1111 112 3689999999998 4654
No 181
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.92 E-value=7.5e-05 Score=73.37 Aligned_cols=91 Identities=19% Similarity=0.348 Sum_probs=65.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
.+++++|||+|+.|+.+|..+.+.+ .+|+|+++.+.+. |.+ ..++...+.+.++.. ++++.+..+..
T Consensus 173 ~~~~vvIiGgG~iG~E~A~~l~~~G--~~Vtlv~~~~~il--------~~~--d~~~~~~~~~~l~~~-v~i~~~~~v~~ 239 (471)
T PRK06467 173 VPKRLLVMGGGIIGLEMGTVYHRLG--SEVDVVEMFDQVI--------PAA--DKDIVKVFTKRIKKQ-FNIMLETKVTA 239 (471)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCC--------CcC--CHHHHHHHHHHHhhc-eEEEcCCEEEE
Confidence 3579999999999999999999987 8999999887531 322 245556666677666 88888765421
Q ss_pred --------EEeccc-----ceeccCeEEEeccCCCCCC
Q 019876 98 --------SVSLSE-----LRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~~~-----~~~~yd~lIlATGs~~p~~ 122 (334)
.+...+ .++++|.||+|+|. .|..
T Consensus 240 i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~-~pn~ 276 (471)
T PRK06467 240 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR-VPNG 276 (471)
T ss_pred EEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc-cccC
Confidence 122211 13689999999998 4654
No 182
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=1.1e-05 Score=77.72 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=38.3
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~ 62 (334)
|||+|+|||.|||+||.+|...| ++|+|+|.++.+||.+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g--~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAG--YDVTLYEARDRLGGKVAS 41 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCC--CceEEEeccCccCceeee
Confidence 68999999999999999999998 999999999999997643
No 183
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.92 E-value=8.6e-05 Score=73.14 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=67.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcC-CCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~-~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
.+++++|||+|+.|+.+|..+.... .+.+|+|+++.+.+. |.+ ..++...+.+.+++.|++++.+..+.
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il--------~~~--d~~~~~~l~~~L~~~GI~i~~~~~v~ 255 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL--------RGF--DSTLRKELTKQLRANGINIMTNENPA 255 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc--------ccc--CHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence 3579999999999999998765541 138999999877541 322 34566777778888899999887542
Q ss_pred e---------EEeccc-ceeccCeEEEeccCCCCCC
Q 019876 97 S---------SVSLSE-LRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 97 ~---------~v~~~~-~~~~yd~lIlATGs~~p~~ 122 (334)
. .+.+.+ ..+++|.||+|+|. .|..
T Consensus 256 ~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~-~Pn~ 290 (486)
T TIGR01423 256 KVTLNADGSKHVTFESGKTLDVDVVMMAIGR-VPRT 290 (486)
T ss_pred EEEEcCCceEEEEEcCCCEEEcCEEEEeeCC-CcCc
Confidence 1 122222 24689999999998 4654
No 184
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.91 E-value=1.9e-05 Score=78.06 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=40.5
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhhcC--CCCeEEEEcCCCCCccccc
Q 019876 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 15 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~--~~~~v~vie~~~~~gg~~~ 61 (334)
.....++++|||||.|||+||.+|.+.+ ++.+|+|+|+.+.+||.+.
T Consensus 18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 3344689999999999999999999975 5689999999999998764
No 185
>PRK07208 hypothetical protein; Provisional
Probab=97.91 E-value=1.3e-05 Score=78.70 Aligned_cols=42 Identities=33% Similarity=0.521 Sum_probs=38.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~ 61 (334)
+.++|+|||||++||+||..|.+++ .+|+|+|+.+.+||.+.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g--~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRG--YPVTVLEADPVVGGISR 44 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCceee
Confidence 4578999999999999999999987 99999999999998763
No 186
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.90 E-value=8.4e-05 Score=74.80 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=33.2
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
..+|+|||+|.||++||..+++.+++.+|+|+|+.+..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~ 40 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPI 40 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCC
Confidence 35899999999999999999987666899999998653
No 187
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.89 E-value=9.8e-05 Score=70.38 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=74.9
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
...+|+++|+|..|+.+|..|.... .+|++|++++.+ .|. .....+...+..++++.+++++.++.+..
T Consensus 212 ~~~~vV~vG~G~ig~Evaa~l~~~~--~~VT~V~~e~~~--------~~~-lf~~~i~~~~~~y~e~kgVk~~~~t~~s~ 280 (478)
T KOG1336|consen 212 LGGKVVCVGGGFIGMEVAAALVSKA--KSVTVVFPEPWL--------LPR-LFGPSIGQFYEDYYENKGVKFYLGTVVSS 280 (478)
T ss_pred cCceEEEECchHHHHHHHHHHHhcC--ceEEEEccCccc--------hhh-hhhHHHHHHHHHHHHhcCeEEEEecceee
Confidence 3678999999999999999999986 999999998753 132 12345777888899999999999887631
Q ss_pred ----------EEecccce-eccCeEEEeccCCCCCCCCCC
Q 019876 98 ----------SVSLSELR-QLYHVVVLAYGAESDRALGIP 126 (334)
Q Consensus 98 ----------~v~~~~~~-~~yd~lIlATGs~~p~~~~ip 126 (334)
.+.+.+++ ..+|-||+.+|+ .|......
T Consensus 281 l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~-~p~t~~~~ 319 (478)
T KOG1336|consen 281 LEGNSDGEVSEVKLKDGKTLEADLVVVGIGI-KPNTSFLE 319 (478)
T ss_pred cccCCCCcEEEEEeccCCEeccCeEEEeecc-cccccccc
Confidence 24444444 589999999999 57765544
No 188
>PLN02576 protoporphyrinogen oxidase
Probab=97.89 E-value=1.6e-05 Score=78.54 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=38.8
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhc-CCCCeEEEEcCCCCCccccc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~-~~~~~v~vie~~~~~gg~~~ 61 (334)
...++|+|||||++||+||.+|.+. + .+|+|+|+++.+||.+.
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g--~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHG--VNVLVTEARDRVGGNIT 53 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcC--CCEEEEecCCCCCCcee
Confidence 3457999999999999999999998 6 89999999999998764
No 189
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.89 E-value=0.00011 Score=72.82 Aligned_cols=90 Identities=19% Similarity=0.226 Sum_probs=65.5
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 97 (334)
+++++|||+|+.|+.+|..|.+.+ .+|+|+++. .+. +.+ ..++...+.+.+++.||+++.+..+..
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~-~~l--------~~~--d~~~~~~l~~~l~~~GV~i~~~~~v~~v 248 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELG--FDVTVAVRS-IPL--------RGF--DRQCSEKVVEYMKEQGTLFLEGVVPINI 248 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcC-ccc--------ccC--CHHHHHHHHHHHHHcCCEEEcCCeEEEE
Confidence 469999999999999999999987 899999863 221 221 235666777788888999998865321
Q ss_pred -------EEecccc-eeccCeEEEeccCCCCCC
Q 019876 98 -------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 -------~v~~~~~-~~~yd~lIlATGs~~p~~ 122 (334)
.+.+.++ .+.+|.||+|+|. .|+.
T Consensus 249 ~~~~~~~~v~~~~g~~i~~D~vl~a~G~-~pn~ 280 (499)
T PTZ00052 249 EKMDDKIKVLFSDGTTELFDTVLYATGR-KPDI 280 (499)
T ss_pred EEcCCeEEEEECCCCEEEcCEEEEeeCC-CCCc
Confidence 1222222 3589999999998 4654
No 190
>PRK07233 hypothetical protein; Provisional
Probab=97.87 E-value=1.5e-05 Score=76.98 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=36.3
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~ 61 (334)
+|+|||||.+||+||..|.+.| .+|+|+|+++.+||.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G--~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRG--HEVTVFEADDQLGGLAA 39 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCcee
Confidence 6899999999999999999997 99999999999999763
No 191
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.86 E-value=0.00012 Score=71.65 Aligned_cols=91 Identities=14% Similarity=0.193 Sum_probs=63.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
.+++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +.. ..++...+.+.++ .+++++++..+..
T Consensus 168 ~~k~vvVIGgG~ig~E~A~~l~~~G--~~Vtli~~~~~ll--------~~~--d~~~~~~l~~~~~-~gI~i~~~~~V~~ 234 (452)
T TIGR03452 168 LPESLVIVGGGYIAAEFAHVFSALG--TRVTIVNRSTKLL--------RHL--DEDISDRFTEIAK-KKWDIRLGRNVTA 234 (452)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCC--CcEEEEEccCccc--------ccc--CHHHHHHHHHHHh-cCCEEEeCCEEEE
Confidence 3579999999999999999999987 8999999876532 211 2344445555444 4799888765421
Q ss_pred --------EEecccc-eeccCeEEEeccCCCCCC
Q 019876 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~~~~-~~~yd~lIlATGs~~p~~ 122 (334)
.+...++ ++++|.|++|+|. .|..
T Consensus 235 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~-~pn~ 267 (452)
T TIGR03452 235 VEQDGDGVTLTLDDGSTVTADVLLVATGR-VPNG 267 (452)
T ss_pred EEEcCCeEEEEEcCCCEEEcCEEEEeecc-CcCC
Confidence 1222223 4689999999998 4655
No 192
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.86 E-value=2e-05 Score=73.93 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=42.4
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~ 62 (334)
...++|+|+|||.+|+++|.+|++++|+..|+|||..++.||+++.
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 3568999999999999999999999999999999999999998865
No 193
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.86 E-value=0.00013 Score=71.29 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=67.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
.+++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+++. ++++++..+..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~d~~~~~~~~~~l~~~-I~i~~~~~v~~ 234 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLG--VKVTVFERGDRIL--------PL--EDPEVSKQAQKILSKE-FKIKLGAKVTS 234 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcC--------cc--hhHHHHHHHHHHHhhc-cEEEcCCEEEE
Confidence 4579999999999999999999987 8999999887542 22 1245666777778877 99988765521
Q ss_pred -------EEec----cc-ceeccCeEEEeccCCCCCCC
Q 019876 98 -------SVSL----SE-LRQLYHVVVLAYGAESDRAL 123 (334)
Q Consensus 98 -------~v~~----~~-~~~~yd~lIlATGs~~p~~~ 123 (334)
.+.+ .+ ..+++|.|++|+|. .|+..
T Consensus 235 i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~-~p~~~ 271 (460)
T PRK06292 235 VEKSGDEKVEELEKGGKTETIEADYVLVATGR-RPNTD 271 (460)
T ss_pred EEEcCCceEEEEEcCCceEEEEeCEEEEccCC-ccCCC
Confidence 1221 11 23689999999998 46653
No 194
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.86 E-value=0.00013 Score=74.26 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=64.9
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHh-hcCCcEEEeCeEEce
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVV-QHERCSFFGNVTLGS 97 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~-~~~~i~~~~~~~v~~ 97 (334)
+++|+|||+|+.|+.+|..+.+.+ .+|+++++.+.+. |.+ ..++...+...+ ++.||+++.+..+..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G--~eVTLIe~~~~ll--------~~~--d~eis~~l~~~ll~~~GV~I~~~~~V~~ 379 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALG--SEVVSFEYSPQLL--------PLL--DADVAKYFERVFLKSKPVRVHLNTLIEY 379 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCC--CeEEEEeccCccc--------ccC--CHHHHHHHHHHHhhcCCcEEEcCCEEEE
Confidence 579999999999999999999987 8999999987642 321 234555555543 567899998876521
Q ss_pred --------EEec--c-------cc---------eeccCeEEEeccCCCCCC
Q 019876 98 --------SVSL--S-------EL---------RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~--~-------~~---------~~~yd~lIlATGs~~p~~ 122 (334)
.+.+ . +. .+++|.||+|||. .|+.
T Consensus 380 I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr-~Pnt 429 (659)
T PTZ00153 380 VRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGR-KPNT 429 (659)
T ss_pred EEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECc-ccCC
Confidence 0211 1 11 4689999999998 4664
No 195
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.86 E-value=1.7e-05 Score=77.53 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=38.2
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCC--CCeEEEEcCCCCCccccc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~--~~~v~vie~~~~~gg~~~ 61 (334)
+++|+|||||.+||+||..|.+.+| +.+|+|+|+++.+||.+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 4689999999999999999999843 499999999999998764
No 196
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.85 E-value=1.9e-05 Score=77.32 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=37.0
Q ss_pred CeEEEECCchHHHHHHHHHhhcC----CCCeEEEEcCCCCCccccc
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~----~~~~v~vie~~~~~gg~~~ 61 (334)
++|+|||||.+||+||..|.+.+ .+.+|+|+|+++.+||.+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 58999999999999999999863 2479999999999999764
No 197
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.85 E-value=5.1e-05 Score=70.33 Aligned_cols=93 Identities=17% Similarity=0.260 Sum_probs=73.9
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
.-+++++|||+|..|+..+.-..+.| .+||++|-.+.+|+.+ ..++...++..+...++.|.+++.+.
T Consensus 209 ~vPk~~~viG~G~IGLE~gsV~~rLG--seVT~VEf~~~i~~~m----------D~Eisk~~qr~L~kQgikF~l~tkv~ 276 (506)
T KOG1335|consen 209 EVPKKLTVIGAGYIGLEMGSVWSRLG--SEVTVVEFLDQIGGVM----------DGEISKAFQRVLQKQGIKFKLGTKVT 276 (506)
T ss_pred hCcceEEEEcCceeeeehhhHHHhcC--CeEEEEEehhhhcccc----------CHHHHHHHHHHHHhcCceeEeccEEE
Confidence 45789999999999999999999998 9999999988876543 24677888889999999999998873
Q ss_pred e---------EEeccc------ceeccCeEEEeccCCCCCC
Q 019876 97 S---------SVSLSE------LRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 97 ~---------~v~~~~------~~~~yd~lIlATGs~~p~~ 122 (334)
. .+.+.+ ...++|.+++|+|- +|+.
T Consensus 277 ~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR-rP~t 316 (506)
T KOG1335|consen 277 SATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR-RPFT 316 (506)
T ss_pred EeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC-cccc
Confidence 1 222222 12479999999998 5765
No 198
>PLN02268 probable polyamine oxidase
Probab=97.84 E-value=2e-05 Score=76.54 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=36.8
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~ 61 (334)
.+|+|||||.|||+||..|.+.+ .+|+|+|+++.+||.+.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g--~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDAS--FKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCceee
Confidence 47999999999999999999986 89999999999999764
No 199
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.83 E-value=8.1e-05 Score=73.30 Aligned_cols=80 Identities=23% Similarity=0.186 Sum_probs=59.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
..++|+|||+|.+|+++|..|++.| .+|+++|+.+. .....+.+.+++.|++++.+....
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~-----------------~~~~~~~~~l~~~gv~~~~~~~~~- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDD-----------------ERHRALAAILEALGATVRLGPGPT- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCch-----------------hhhHHHHHHHHHcCCEEEECCCcc-
Confidence 4579999999999999999999987 89999997642 111233444566789988775432
Q ss_pred EEecccceeccCeEEEeccCCCCCCCC
Q 019876 98 SVSLSELRQLYHVVVLAYGAESDRALG 124 (334)
Q Consensus 98 ~v~~~~~~~~yd~lIlATGs~~p~~~~ 124 (334)
....+|.||+++|. .|..+-
T Consensus 75 ------~~~~~D~Vv~s~Gi-~~~~~~ 94 (480)
T PRK01438 75 ------LPEDTDLVVTSPGW-RPDAPL 94 (480)
T ss_pred ------ccCCCCEEEECCCc-CCCCHH
Confidence 22468999999998 466553
No 200
>PLN02546 glutathione reductase
Probab=97.83 E-value=0.00014 Score=72.70 Aligned_cols=92 Identities=14% Similarity=0.144 Sum_probs=67.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
..++|+|||+|+.|+.+|..|.+.+ .+|+|+++.+.+. +.+ ..++...+.+.+++.||+++.+..+..
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g--~~Vtlv~~~~~il--------~~~--d~~~~~~l~~~L~~~GV~i~~~~~v~~ 318 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLK--SDVHVFIRQKKVL--------RGF--DEEVRDFVAEQMSLRGIEFHTEESPQA 318 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEEeccccc--------ccc--CHHHHHHHHHHHHHCCcEEEeCCEEEE
Confidence 4579999999999999999999886 8999999876532 221 345666677778888999998865421
Q ss_pred ---------EEeccccee-ccCeEEEeccCCCCCC
Q 019876 98 ---------SVSLSELRQ-LYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 ---------~v~~~~~~~-~yd~lIlATGs~~p~~ 122 (334)
.+...+.+. .+|.||+|+|. .|+.
T Consensus 319 i~~~~~g~v~v~~~~g~~~~~D~Viva~G~-~Pnt 352 (558)
T PLN02546 319 IIKSADGSLSLKTNKGTVEGFSHVMFATGR-KPNT 352 (558)
T ss_pred EEEcCCCEEEEEECCeEEEecCEEEEeecc-ccCC
Confidence 112223333 48999999998 4654
No 201
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.83 E-value=2.1e-05 Score=77.67 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=37.4
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~ 61 (334)
++|+|||||++||+||..|++.| ++|+|+|+++.+||...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G--~~v~vlE~~~~~GG~~~ 41 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRG--YRVTLLEQHAQPGGCAG 41 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccc
Confidence 58999999999999999999997 99999999999998764
No 202
>PRK06996 hypothetical protein; Provisional
Probab=97.82 E-value=0.00014 Score=69.74 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=34.1
Q ss_pred cCCCCCCeEEEECCchHHHHHHHHHhhcCC--CCeEEEEcCCC
Q 019876 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVDIIDRLP 54 (334)
Q Consensus 14 ~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~--~~~v~vie~~~ 54 (334)
++....++|+||||||+|+++|..|++.+- +.+|+|+|+.+
T Consensus 6 ~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 6 SMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred hccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 345566899999999999999999999851 36899999864
No 203
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.80 E-value=0.00016 Score=68.88 Aligned_cols=36 Identities=39% Similarity=0.611 Sum_probs=30.9
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
+|+||||||||+++|..|.+..++.+|+|+|+.+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 689999999999999999555556999999987654
No 204
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.78 E-value=0.00019 Score=68.00 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=63.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhhc----CCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCe
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKA----HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~----~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~ 93 (334)
..++|+|||+|++|+.+|..|.+. +...+|+|+. .+.+. +. ....+...+.+.+++.+|+++.+.
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l--------~~--~~~~~~~~~~~~l~~~gV~v~~~~ 212 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLL--------PG--FPAKVRRLVLRLLARRGIEVHEGA 212 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCccc--------cc--CCHHHHHHHHHHHHHCCCEEEeCC
Confidence 346999999999999999999753 2225899993 32211 11 123455667778888999999987
Q ss_pred EEce----EEecccc-eeccCeEEEeccCCCCC
Q 019876 94 TLGS----SVSLSEL-RQLYHVVVLAYGAESDR 121 (334)
Q Consensus 94 ~v~~----~v~~~~~-~~~yd~lIlATGs~~p~ 121 (334)
.+.. .+.+.++ .+++|.||+|+|.. |.
T Consensus 213 ~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~-p~ 244 (364)
T TIGR03169 213 PVTRGPDGALILADGRTLPADAILWATGAR-AP 244 (364)
T ss_pred eeEEEcCCeEEeCCCCEEecCEEEEccCCC-hh
Confidence 6531 3444433 46899999999984 54
No 205
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.76 E-value=2.4e-05 Score=77.36 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=35.7
Q ss_pred EEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 22 vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~ 61 (334)
|||||||.+||+||.+|++.| .+|+|+|+++.+||++.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G--~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAG--IPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCC--CcEEEEECCCCCcCceE
Confidence 689999999999999999997 99999999999999864
No 206
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.76 E-value=0.00021 Score=71.39 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=33.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g 57 (334)
...+|+|||+|.||+.||..+++.+ .+|+|+|+.+..+
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G--~~VilleK~~~~~ 52 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAG--RRVLVVTKAALDD 52 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CeEEEEEccCCCC
Confidence 3579999999999999999999987 9999999986543
No 207
>PRK10262 thioredoxin reductase; Provisional
Probab=97.76 E-value=0.00022 Score=66.30 Aligned_cols=90 Identities=22% Similarity=0.224 Sum_probs=65.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
..++|+|||+|..|+.+|..|++.+ .+|+++++.+.. +. ...+...+.+.+++.+|+++.+..+..
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~--~~Vtlv~~~~~~---------~~---~~~~~~~~~~~l~~~gV~i~~~~~v~~ 210 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIA--SEVHLIHRRDGF---------RA---EKILIKRLMDKVENGNIILHTNRTLEE 210 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhC--CEEEEEEECCcc---------CC---CHHHHHHHHhhccCCCeEEEeCCEEEE
Confidence 4679999999999999999999986 899999987542 11 123455667777888999988765421
Q ss_pred ---------EEeccc-------ceeccCeEEEeccCCCCCC
Q 019876 98 ---------SVSLSE-------LRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 ---------~v~~~~-------~~~~yd~lIlATGs~~p~~ 122 (334)
.+.+.+ ..+++|.||+|+|. .|..
T Consensus 211 v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~-~p~~ 250 (321)
T PRK10262 211 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH-SPNT 250 (321)
T ss_pred EEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC-ccCh
Confidence 122221 13689999999998 4654
No 208
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.75 E-value=3.8e-05 Score=73.91 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=33.5
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
...++|+|||||+||+++|..|++.| ++|+|+|+.+.
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 52 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSG--LRIALIEAQPA 52 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCC--CEEEEEecCCc
Confidence 44689999999999999999999997 99999998764
No 209
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.71 E-value=4.9e-05 Score=67.50 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=34.8
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~ 60 (334)
..|+|||+|++|++||..|+..| .+|+||||..-.||.+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG--~~vtV~eKg~GvGGRl 40 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAG--REVTVFEKGRGVGGRL 40 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcC--cEEEEEEcCCCcccch
Confidence 36999999999999999999997 9999999987666654
No 210
>PRK06753 hypothetical protein; Provisional
Probab=97.71 E-value=4e-05 Score=72.69 Aligned_cols=34 Identities=15% Similarity=0.433 Sum_probs=31.7
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
++|+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g--~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQG--HEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence 58999999999999999999997 99999999865
No 211
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.70 E-value=0.00019 Score=68.27 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=32.7
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
+|+|||||+||+++|..|.+..++.+|.|+|+.+..++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 68999999999999999998734599999999876554
No 212
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.70 E-value=5e-05 Score=72.12 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=36.2
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~ 61 (334)
++|+|||||++|+++|..|.+.+ .+|+|+|+++.+||.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G--~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLN--KRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCCcee
Confidence 58999999999999999999876 89999999988888654
No 213
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.69 E-value=4.3e-05 Score=74.59 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=35.5
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~ 60 (334)
+|+|||||++|++||.+|.+.| .+|+|+|+.+.+||.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G--~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAG--HTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCc
Confidence 5899999999999999999997 9999999999999865
No 214
>PRK07045 putative monooxygenase; Reviewed
Probab=97.69 E-value=4.8e-05 Score=72.65 Aligned_cols=36 Identities=31% Similarity=0.390 Sum_probs=32.9
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..++|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G--~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARG--HSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcC--CcEEEEeCCCc
Confidence 4579999999999999999999997 99999998764
No 215
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.68 E-value=5.7e-05 Score=71.93 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=37.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~ 60 (334)
...+|||||||.||++||..|...+ ..+++|+|..+++||.+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~g-f~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENG-FIDVLILEASDRIGGRI 61 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhC-CceEEEEEeccccCceE
Confidence 3459999999999999999999776 58999999999999865
No 216
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.67 E-value=0.00032 Score=70.02 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=30.2
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
++|+|||||+||+.+|..+++.+ .+|+|+++..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G--~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMG--AKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CCEEEEeccc
Confidence 47999999999999999999987 9999999864
No 217
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.67 E-value=0.00028 Score=70.61 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=30.4
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..+|+|||+|.||++||..+ +.+ .+|+|+|+.+.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G--~~VilleK~~~ 40 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERG--KNVVIVSKGLF 40 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcC--CCEEEEEccCC
Confidence 46999999999999999999 776 99999999754
No 218
>PLN02568 polyamine oxidase
Probab=97.65 E-value=7.5e-05 Score=74.38 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=38.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcC---CCCeEEEEcCCCCCccccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAH---QEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~---~~~~v~vie~~~~~gg~~~ 61 (334)
..++|+|||||++|++||.+|.+.+ ++.+|+|+|+++.+||.+.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence 3468999999999999999999865 2489999999999998764
No 219
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.64 E-value=0.00037 Score=68.78 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=30.3
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
.+|+|||+|.||+.||..+.+.+ . |+|+|+.+..
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G--~-V~lleK~~~~ 36 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQG--R-VIVLSKAPVT 36 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCC--C-EEEEEccCCC
Confidence 58999999999999999999886 5 9999998543
No 220
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.62 E-value=6.8e-05 Score=74.10 Aligned_cols=41 Identities=29% Similarity=0.360 Sum_probs=37.6
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~ 62 (334)
.+|+|||||.+|+++|..|++.| .+|+|+|+++.+||+...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKG--AKVLVLERYLIPGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCC--CcEEEEECCCCCCCceeE
Confidence 37999999999999999999997 999999999999987753
No 221
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.60 E-value=5.6e-05 Score=69.32 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=36.9
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~ 60 (334)
..+++|+|||+|.+|++||..|.+. .+|++||.+..+||-.
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r---hdVTLfEA~~rlGGha 46 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR---HDVTLFEADRRLGGHA 46 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc---cceEEEeccccccCcc
Confidence 4678999999999999999999998 7999999998888743
No 222
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.58 E-value=8.9e-05 Score=70.74 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=33.0
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
++.++|+|||||++|+++|..|++.| ++|+|||+.+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G--~~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAG--ASVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCC--CeEEEEeCCCC
Confidence 34579999999999999999999987 99999999754
No 223
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.57 E-value=0.00019 Score=68.93 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=65.4
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc-------------------------
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV------------------------- 215 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~------------------------- 215 (334)
+|+|||||.+|+=+|..+++ .|. +|.|++|.+.+
T Consensus 2 dviIIGgGaAGl~aA~~aa~--------------------~g~-~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~ 60 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE--------------------KGA-RVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFL 60 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH--------------------TT---EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEE
T ss_pred cEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEeCCcccccceeecCCCCccccccccchhhHh
Confidence 58999999999999999986 343 35555555322
Q ss_pred -------------ccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceE
Q 019876 216 -------------QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (334)
Q Consensus 216 -------------~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 282 (334)
+..|++.++.+.++..||.....+...-+. .+...+.+.+.|.+.+. +.|
T Consensus 61 ~~~~~~~~f~~~~l~~f~~~d~~~ff~~~Gv~~~~~~~gr~fP--------~s~~a~~Vv~~L~~~l~---------~~g 123 (409)
T PF03486_consen 61 SGYGRNPKFLKSALKRFSPEDLIAFFEELGVPTKIEEDGRVFP--------KSDKASSVVDALLEELK---------RLG 123 (409)
T ss_dssp CS-TBTTTCTHHHHHHS-HHHHHHHHHHTT--EEE-STTEEEE--------TT--HHHHHHHHHHHHH---------HHT
T ss_pred hhcccchHHHHHHHhcCCHHHHHHHHHhcCCeEEEcCCCEECC--------CCCcHHHHHHHHHHHHH---------HcC
Confidence 123444677788888898887665442211 22233445566666554 679
Q ss_pred EEEEeccccceeeccccCCCCeeEEEE-EEeeeec
Q 019876 283 LHFVFFRKPDSFLESNERSGHVSGVHF-EKTALKG 316 (334)
Q Consensus 283 v~~~~~~~~~~i~~~~~~~~~v~~v~~-~~~~~~~ 316 (334)
|+|++++.+.+|. . .++.+-.|++ ....+..
T Consensus 124 v~i~~~~~V~~i~--~-~~~~~f~v~~~~~~~~~a 155 (409)
T PF03486_consen 124 VEIHFNTRVKSIE--K-KEDGVFGVKTKNGGEYEA 155 (409)
T ss_dssp -EEE-S--EEEEE--E-ETTEEEEEEETTTEEEEE
T ss_pred CEEEeCCEeeeee--e-cCCceeEeeccCcccccC
Confidence 9999999999997 3 2566677888 4434443
No 224
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.57 E-value=0.0046 Score=59.35 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=30.2
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
++++|||+|++|+.+|..+.+.+ .+|+|+++..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g--~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAG--KKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence 47999999999999999999886 8999999874
No 225
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.56 E-value=0.00012 Score=68.89 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=67.8
Q ss_pred CeEEEECCchHHHHHHHHHhhcC------------CCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCc
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERC 87 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~------------~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i 87 (334)
-++|||||||.|+.+|..|...- ...+|+++|..+.+ .+.| .+.+..+-.+++.+.+|
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i--------L~mF--dkrl~~yae~~f~~~~I 288 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI--------LNMF--DKRLVEYAENQFVRDGI 288 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH--------HHHH--HHHHHHHHHHHhhhccc
Confidence 57999999999999999986421 25899999987753 1322 45677888889999999
Q ss_pred EEEeCeEEc----eEEec--ccc---eeccCeEEEeccCCCCCC
Q 019876 88 SFFGNVTLG----SSVSL--SEL---RQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 88 ~~~~~~~v~----~~v~~--~~~---~~~yd~lIlATGs~~p~~ 122 (334)
++.+++.|. .++.. .++ .++|-.||-|||. .|++
T Consensus 289 ~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~-~~rp 331 (491)
T KOG2495|consen 289 DLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGN-GPRP 331 (491)
T ss_pred eeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCC-CCch
Confidence 999997663 22322 222 3589999999998 4654
No 226
>PRK07538 hypothetical protein; Provisional
Probab=97.56 E-value=8.8e-05 Score=71.53 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=31.6
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
|+|+|||||++|+++|..|++.| ++|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRG--IEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEEcCCc
Confidence 58999999999999999999997 99999999864
No 227
>PRK08013 oxidoreductase; Provisional
Probab=97.56 E-value=9.6e-05 Score=70.98 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=32.1
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
.++|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G--~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSG--LRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCC--CEEEEEeCCCC
Confidence 469999999999999999999987 99999998764
No 228
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.55 E-value=9.7e-05 Score=70.54 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=31.2
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
.++|+||||||+|+++|..|++.| ++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQG--RSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC--CcEEEEcCCC
Confidence 368999999999999999999987 9999999764
No 229
>PLN02529 lysine-specific histone demethylase 1
Probab=97.54 E-value=0.00011 Score=75.28 Aligned_cols=41 Identities=29% Similarity=0.352 Sum_probs=36.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~ 60 (334)
..++|+|||||++|++||..|.+.| ++|+|+|+++.+||.+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFG--FKVVVLEGRNRPGGRV 199 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcC--CcEEEEecCccCcCce
Confidence 4679999999999999999999997 9999999988776643
No 230
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.54 E-value=9.1e-05 Score=70.33 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=30.8
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
+|+|||||+||+++|..|++.| ++|+|||+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G--~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSG--LKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCC--CEEEEEeCCCc
Confidence 5899999999999999999997 99999999864
No 231
>PRK05868 hypothetical protein; Validated
Probab=97.54 E-value=0.00011 Score=70.02 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=32.1
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
+++|+|||||++|+++|..|++.| ++|+|||+.+.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G--~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHG--YSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Confidence 468999999999999999999987 99999998865
No 232
>PRK09126 hypothetical protein; Provisional
Probab=97.53 E-value=9.8e-05 Score=70.52 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=32.2
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..+|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSG--LKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCc
Confidence 478999999999999999999997 99999999754
No 233
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.51 E-value=0.00011 Score=70.39 Aligned_cols=33 Identities=36% Similarity=0.570 Sum_probs=31.5
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
.++|+||||||+|+++|..|++.| ++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G--~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG--LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEccC
Confidence 579999999999999999999998 999999997
No 234
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.51 E-value=0.00011 Score=70.29 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=31.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhhc---CCCCeEEEEcCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRL 53 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~---~~~~~v~vie~~ 53 (334)
+.++|+||||||||+++|..|++. | .+|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G--~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGG--LPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCC--CEEEEEeCC
Confidence 457999999999999999999997 7 999999994
No 235
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.49 E-value=0.00012 Score=70.04 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=32.1
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
.++|+|||||++|+++|..|++.| ++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCC--CCEEEEECCCC
Confidence 368999999999999999999997 99999999863
No 236
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.48 E-value=0.00018 Score=69.19 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=38.8
Q ss_pred ccccccccccCCCCCCeEEEECCchHHHHHHHHHhhc-CCCCeEEEEcCCCC
Q 019876 5 RAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPT 55 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~-~~~~~v~vie~~~~ 55 (334)
+.|-.+..+++.....+|+|||||.+|+++|.+|.+. + ..+|+|+|+...
T Consensus 16 ~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g-~~~V~vle~~~~ 66 (407)
T TIGR01373 16 RGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHG-ITNVAVLEKGWL 66 (407)
T ss_pred CCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcC-CCeEEEEEcccc
Confidence 3454444555566778999999999999999999985 4 138999999753
No 237
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.47 E-value=0.00014 Score=69.90 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=31.6
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
.+|+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G--~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARG--WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence 68999999999999999999987 99999998764
No 238
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.47 E-value=0.00011 Score=68.78 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=37.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcC----CCCeEEEEcCCCCCccccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~----~~~~v~vie~~~~~gg~~~ 61 (334)
...+|+|||||||||+||..|++.. .+++|.|+|+...+||...
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl 122 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL 122 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee
Confidence 3579999999999999999997653 5789999999988877543
No 239
>PLN02676 polyamine oxidase
Probab=97.46 E-value=0.00016 Score=71.23 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=38.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCCCCcccccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRS 62 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~~~gg~~~~ 62 (334)
...+|+|||||++|++||.+|.+.+ . +|+|+|+++.+||.+..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g--~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAG--IEDILILEATDRIGGRMRK 68 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcC--CCcEEEecCCCCCCCccee
Confidence 4679999999999999999999987 6 69999999999987643
No 240
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.45 E-value=0.00017 Score=69.63 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=31.7
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
++|+|||||++|+++|..|++.+ .++|+|||+.+..
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g-~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHS-HLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcC-CCCEEEEecCCcC
Confidence 58999999999999999999985 3599999998653
No 241
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.45 E-value=0.00014 Score=71.59 Aligned_cols=39 Identities=36% Similarity=0.431 Sum_probs=35.8
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~ 61 (334)
+|+|||||.+|+++|..|.+.| ++|+|+|+++.+||.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~ 39 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAG--HEVDIYESRSFIGGKVG 39 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCCCCceee
Confidence 5899999999999999999987 99999999999988654
No 242
>PLN02487 zeta-carotene desaturase
Probab=97.45 E-value=0.00019 Score=71.76 Aligned_cols=41 Identities=37% Similarity=0.487 Sum_probs=37.4
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~ 61 (334)
+++|+|||+|++|+++|..|.+.| ++|+|+|+.+.+||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g--~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CeeEEEecCCCCCCcee
Confidence 469999999999999999999997 99999999999988653
No 243
>PRK07190 hypothetical protein; Provisional
Probab=97.42 E-value=0.00019 Score=70.73 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=32.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
...+|+||||||+|+.+|..|++.| .+|+|+|+.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~G--i~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCG--LNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcC--CCEEEEeCCCc
Confidence 4579999999999999999999987 99999999864
No 244
>PRK06126 hypothetical protein; Provisional
Probab=97.42 E-value=0.0002 Score=71.69 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=33.2
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
....+|+||||||+|+++|..|.+.| ++|+|||+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G--~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRG--VDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCC
Confidence 34579999999999999999999997 99999998753
No 245
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.42 E-value=0.001 Score=66.20 Aligned_cols=86 Identities=10% Similarity=0.128 Sum_probs=59.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhc-CCcEEEeCeEEc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQH-ERCSFFGNVTLG 96 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~-~~i~~~~~~~v~ 96 (334)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. . . ..+...++. .||+++.++.+.
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g--~~Vtli~~~~~l~--------~-----~---~~l~~~l~~~~gV~i~~~~~v~ 412 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIV--RHVTVLEFADELK--------A-----D---KVLQDKLKSLPNVDILTSAQTT 412 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcC--cEEEEEEeCCcCC--------h-----h---HHHHHHHhcCCCCEEEECCeeE
Confidence 3579999999999999999999886 8999998765431 1 1 123344444 589998876542
Q ss_pred e---------EEeccc------ceeccCeEEEeccCCCCCC
Q 019876 97 S---------SVSLSE------LRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 97 ~---------~v~~~~------~~~~yd~lIlATGs~~p~~ 122 (334)
. .+.+.+ ...++|.|++|+|. .|..
T Consensus 413 ~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~-~Pn~ 452 (515)
T TIGR03140 413 EIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL-VPNT 452 (515)
T ss_pred EEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC-cCCc
Confidence 1 132221 13589999999998 4654
No 246
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.41 E-value=0.0002 Score=73.86 Aligned_cols=41 Identities=34% Similarity=0.494 Sum_probs=37.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~ 60 (334)
..++|+|||||++|++||..|.+.+ .+|+|+|+++.+||.+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g--~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMG--FKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeccccCCCcc
Confidence 4688999999999999999999987 9999999998888764
No 247
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.41 E-value=0.00099 Score=61.07 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=33.7
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
.+..+++|||||.-|+++|.+|++.+ .++.++|+.+.+
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g--~killLeqf~~p 42 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRG--DKILLLEQFPLP 42 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcC--CeEEEEeccCCC
Confidence 45678999999999999999999998 999999987543
No 248
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.40 E-value=0.0006 Score=66.36 Aligned_cols=145 Identities=31% Similarity=0.440 Sum_probs=76.7
Q ss_pred CCeEEEECCch-HHHHHHHHHhhcCC--CCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcC----CcEEEe
Q 019876 19 PLRVCVVGSGP-AGFYTAEKTLKAHQ--EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHE----RCSFFG 91 (334)
Q Consensus 19 ~~~vvIIGaG~-aGl~aA~~l~~~~~--~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~----~i~~~~ 91 (334)
..+.+++|.++ +++..|..+...+. ...+-+.+.-|.+.++++++. .++..+.+.+...-. .+....
T Consensus 5 ~~~e~~~~~~~~~a~~~a~rCl~C~~~C~~~cp~~~~IP~~~~lv~~g~------~~~a~~~i~~tn~~p~~~gRvcp~~ 78 (457)
T COG0493 5 DFREAVVGSGPEAAIYEAARCLDCGDPCITGCPVHNDIPEPIGLVREGV------DHEAIKLIHKTNNLPAITGRVCPLG 78 (457)
T ss_pred cceeeecCCCHHHHHHHHHHHHcCCCccccCCcCCCcCCCHHHHHhcCC------cHHHHHHHHHhCCCccccCccCCCC
Confidence 57899999999 88888888888751 001111111122222222222 112222222111111 011111
Q ss_pred CeEEceEEec-ccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHH
Q 019876 92 NVTLGSSVSL-SELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNV 170 (334)
Q Consensus 92 ~~~v~~~v~~-~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~ 170 (334)
+.-.+..+.. .+....++.|..+.|........+|+. .++ -..+++|+|||+|+.
T Consensus 79 ~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~-~~~-----------------------~~tg~~VaviGaGPA 134 (457)
T COG0493 79 NLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGE-LPG-----------------------SRTGKKVAVIGAGPA 134 (457)
T ss_pred CceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCC-CCC-----------------------CCCCCEEEEECCCch
Confidence 1112222222 344456777777777632222233332 111 125699999999999
Q ss_pred HHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876 171 ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (334)
Q Consensus 171 g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~ 214 (334)
|+.+|..|++ .|. .||+.+|.+.
T Consensus 135 Gl~~a~~L~~--------------------~G~-~Vtv~e~~~~ 157 (457)
T COG0493 135 GLAAADDLSR--------------------AGH-DVTVFERVAL 157 (457)
T ss_pred HhhhHHHHHh--------------------CCC-eEEEeCCcCC
Confidence 9999999997 665 6999988854
No 249
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.40 E-value=0.00018 Score=68.87 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=32.1
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..+|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G--~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAG--IDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcC--CCEEEEEcCCc
Confidence 468999999999999999999997 99999999863
No 250
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.39 E-value=0.002 Score=60.51 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=74.8
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc-------------------------
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP------------------------- 214 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~------------------------- 214 (334)
..|+|||||..|+=+|..+++... +|+++++...
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~---------------------~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~l 62 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGR---------------------RVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFL 62 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCC---------------------EEEEEecCccccceeEecCCCCccccccccHHHHH
Confidence 579999999999999999997333 3444443321
Q ss_pred ------------cccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceE
Q 019876 215 ------------VQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (334)
Q Consensus 215 ------------~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 282 (334)
.++.|+++.+.+..+..||..+..+.---+..++.. +.+++.|...+ ++.|
T Consensus 63 s~~p~~~~fl~sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA--------~~Iv~~ll~~~---------~~~g 125 (408)
T COG2081 63 SRNPGNGHFLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKA--------SPIVDALLKEL---------EALG 125 (408)
T ss_pred HhCCCcchHHHHHHHhCCHHHHHHHHHhcCCeeEEccCceecCCccch--------HHHHHHHHHHH---------HHcC
Confidence 244788899999999999999987655433332221 12334444444 3679
Q ss_pred EEEEeccccceeeccccCCCCeeEEEEEEe
Q 019876 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKT 312 (334)
Q Consensus 283 v~~~~~~~~~~i~~~~~~~~~v~~v~~~~~ 312 (334)
|++++++.+.+|. . ++..-.+.+.++
T Consensus 126 V~i~~~~~v~~v~--~--~~~~f~l~t~~g 151 (408)
T COG2081 126 VTIRTRSRVSSVE--K--DDSGFRLDTSSG 151 (408)
T ss_pred cEEEecceEEeEE--e--cCceEEEEcCCC
Confidence 9999999999998 4 333444555554
No 251
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.37 E-value=0.00025 Score=68.27 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=31.8
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
++|+|||||.+|+++|.+|++.+ .+|+|+|+++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g--~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRG--YQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 59999999999999999999987 99999999864
No 252
>PRK06185 hypothetical protein; Provisional
Probab=97.36 E-value=0.00022 Score=68.55 Aligned_cols=35 Identities=26% Similarity=0.559 Sum_probs=32.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
..++|+|||||++|+++|..|++.| ++|+|+|+.+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G--~~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAG--VDVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence 4579999999999999999999987 9999999874
No 253
>PLN02612 phytoene desaturase
Probab=97.36 E-value=0.00028 Score=70.86 Aligned_cols=41 Identities=29% Similarity=0.376 Sum_probs=37.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~ 60 (334)
.+++|+|||||.+|++||.+|.+.+ .+++|+|+.+.+||..
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g--~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAG--HKPILLEARDVLGGKV 132 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCCCCCcc
Confidence 4679999999999999999999997 9999999998888865
No 254
>PLN02985 squalene monooxygenase
Probab=97.35 E-value=0.00027 Score=70.12 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=32.6
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
....+|+|||||++|+++|..|++.| .+|+|+|+.+
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G--~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDG--RRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcC--CeEEEEECcC
Confidence 45689999999999999999999987 9999999874
No 255
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.34 E-value=0.00026 Score=67.89 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=31.5
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
.++|+|||||++|+.+|..|++.| ++|+|||+.+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~G--l~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRG--VPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CcEEEEEccCc
Confidence 368999999999999999999997 99999997543
No 256
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.33 E-value=0.00025 Score=68.23 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=30.7
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
.++|+||||||+|+++|..|.+.| ++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G--~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESD--LRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCC--CEEEEEcCC
Confidence 468999999999999999999987 999999985
No 257
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.33 E-value=0.00054 Score=62.39 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=36.9
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~ 61 (334)
+.+++|||||.+|+.+|..|.+.| .+|.|+|+++++||.+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~g--k~VLIvekR~HIGGNaY 41 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLG--KRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcC--CEEEEEeccccCCCccc
Confidence 368999999999999999888887 99999999999998763
No 258
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.33 E-value=0.00023 Score=68.59 Aligned_cols=36 Identities=33% Similarity=0.459 Sum_probs=31.2
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
+|+|||+|.||+.||..+++.+ .+|+|+|+.+..||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G--~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAG--AKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTT--T-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhc--CeEEEEEeeccccc
Confidence 6999999999999999999997 89999999987555
No 259
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.0016 Score=56.32 Aligned_cols=111 Identities=22% Similarity=0.240 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc----------ccCCC-HHHHHH
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV----------QAACT-AKELRE 226 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~----------~~~~~-~~~~~~ 226 (334)
....|+|||+|++|+-+|.+|++ .+. +|.+++|+-.+ .+... .++.++
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk--------------------~g~-kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~ 87 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAK--------------------AGL-KVAIFERKLSFGGGIWGGGMLFNKIVVREEADE 87 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHh--------------------CCc-eEEEEEeecccCCcccccccccceeeecchHHH
Confidence 34679999999999999999997 677 49999998422 11111 378888
Q ss_pred HHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCC-Cee
Q 019876 227 ILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG-HVS 305 (334)
Q Consensus 227 ~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~-~v~ 305 (334)
+|+.-||+..-.++.+- ..+..+. ...++...+ +.|.++..+.++..+. - .++ +|+
T Consensus 88 iL~e~gI~ye~~e~g~~--v~ds~e~--------~skl~~~a~----------~aGaki~n~~~veDvi--~-r~~~rVa 144 (262)
T COG1635 88 ILDEFGIRYEEEEDGYY--VADSAEF--------ASKLAARAL----------DAGAKIFNGVSVEDVI--V-RDDPRVA 144 (262)
T ss_pred HHHHhCCcceecCCceE--EecHHHH--------HHHHHHHHH----------hcCceeeecceEEEEE--E-ecCCceE
Confidence 99888888876665432 1111111 112222222 5689999999999987 3 345 899
Q ss_pred EEEEEEe
Q 019876 306 GVHFEKT 312 (334)
Q Consensus 306 ~v~~~~~ 312 (334)
||.+.++
T Consensus 145 GvVvNWt 151 (262)
T COG1635 145 GVVVNWT 151 (262)
T ss_pred EEEEecc
Confidence 9999885
No 260
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.30 E-value=0.00027 Score=68.79 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=29.2
Q ss_pred CeEEEECCchHHHHHHHHHhh----cCCCCeEEEEcCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLK----AHQEAQVDIIDRL 53 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~----~~~~~~v~vie~~ 53 (334)
++|+||||||+|+++|..|++ .| ++|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G--~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKD--LKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCC--CeEEEEeCC
Confidence 479999999999999999998 55 999999994
No 261
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.30 E-value=0.00032 Score=69.25 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=34.7
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
+...+|+|||||..|+++|.+|.+.+|+.+|+|+|+++.
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 345799999999999999999999877799999999864
No 262
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.30 E-value=0.0015 Score=59.62 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=58.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcC-CcEEEeCeEEc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHE-RCSFFGNVTLG 96 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~-~i~~~~~~~v~ 96 (334)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+... + .. .+.+.+.+. +++++.++.+.
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~--~~V~~v~~~~~~~--------~----~~----~~~~~l~~~~gv~~~~~~~v~ 201 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIA--KKVTLVHRRDKFR--------A----EK----ILLDRLRKNPNIEFLWNSTVK 201 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhc--CEEEEEEeCcccC--------c----CH----HHHHHHHhCCCeEEEeccEEE
Confidence 4579999999999999999999886 8999999865321 1 11 122334444 89988776542
Q ss_pred e--------EEecc-----c-ceeccCeEEEeccCCCCCC
Q 019876 97 S--------SVSLS-----E-LRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 97 ~--------~v~~~-----~-~~~~yd~lIlATGs~~p~~ 122 (334)
. .+.+. + ..+++|.+|+|+|. .|..
T Consensus 202 ~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~-~~~~ 240 (300)
T TIGR01292 202 EIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGH-EPNT 240 (300)
T ss_pred EEEccCcEEEEEEEecCCCceEEEEccEEEEeeCC-CCCh
Confidence 1 12221 1 23589999999997 4543
No 263
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.29 E-value=0.00097 Score=65.12 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=32.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..++|+|||+|..|+.+|..+.+.+ .+|+++.+.+.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G--~~Vtlv~~~~~ 306 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLG--AEVHCLYRRTR 306 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEeecCc
Confidence 4579999999999999999999997 88999998753
No 264
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.28 E-value=0.00028 Score=71.52 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=32.9
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
.++.+|+|||||++|+++|..|++.| ++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~G--i~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKG--FDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcC--CeEEEEeccc
Confidence 35689999999999999999999997 9999999875
No 265
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.26 E-value=0.00042 Score=65.96 Aligned_cols=42 Identities=31% Similarity=0.311 Sum_probs=38.6
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~ 60 (334)
.+..+|+|||+|.+||.+|..|.+.| ++|+|+|.++..||.+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG--~~v~ilEar~r~GGR~ 46 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAG--YQVQILEARDRVGGRS 46 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcC--cEEEEEeccCCcCcee
Confidence 46689999999999999999999998 9999999999988865
No 266
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.26 E-value=0.00036 Score=69.20 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=34.5
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
..+|||||+|.||++||..+++.| .+|+|+|+.+..||
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~G--a~VivlEK~~~~GG 98 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAG--MNPVILEKMPVAGG 98 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCC
Confidence 568999999999999999999997 99999999877654
No 267
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.26 E-value=0.00089 Score=62.78 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=54.1
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceEE
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSV 99 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~v 99 (334)
|+|.|||.|+.|+..|.-|++.| ++|+.+|..+.--..++.|..|-+. ..+.+.+.+......+.+- .
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G--HeVv~vDid~~KV~~ln~g~~PI~E--pgLe~ll~~~~~~gRl~fT--------t 68 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG--HEVVCVDIDESKVELLNKGISPIYE--PGLEELLKENLASGRLRFT--------T 68 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHhCCCCCCcC--ccHHHHHHhccccCcEEEE--------c
Confidence 68999999999999999999997 9999999876533344445545431 1122222222222112221 1
Q ss_pred ecccceeccCeEEEeccC
Q 019876 100 SLSELRQLYHVVVLAYGA 117 (334)
Q Consensus 100 ~~~~~~~~yd~lIlATGs 117 (334)
..+..-..+|.++||+|.
T Consensus 69 d~~~a~~~adv~fIavgT 86 (414)
T COG1004 69 DYEEAVKDADVVFIAVGT 86 (414)
T ss_pred CHHHHHhcCCEEEEEcCC
Confidence 122223478999999998
No 268
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.25 E-value=0.00032 Score=66.70 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=30.2
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
+|+||||||+|+++|..|.+.| +++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G-~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLG-KIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCC-CceEEEEeCCCc
Confidence 5899999999999999999983 389999998754
No 269
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.25 E-value=0.00042 Score=69.40 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=32.9
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
...+|+||||||+|+++|..|.+.| ++|+|||+.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G--~~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQG--VPVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCC
Confidence 4579999999999999999999987 99999999864
No 270
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.00096 Score=64.87 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=29.6
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
.++|+|||||+||+.||...++.| .++.|+-.+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG--~ktlLlT~~ 36 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMG--AKTLLLTLN 36 (621)
T ss_pred CCceEEECCCccchHHHHhhhccC--CeEEEEEcC
Confidence 479999999999999999999997 888887655
No 271
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.22 E-value=0.00045 Score=65.50 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=32.5
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
..+|+|||||.+|+++|.+|++.+ .+|+|+|+....
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g--~~V~lie~~~~~ 38 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRG--LRVLGLDRFMPP 38 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCC--CeEEEEecccCC
Confidence 468999999999999999999997 999999997543
No 272
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.21 E-value=0.00044 Score=65.68 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=31.1
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
.+|+|||||.+|+++|.+|.+.+ .+|+|+|+.+.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g--~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHG--KKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCC
Confidence 47999999999999999999987 89999999754
No 273
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.21 E-value=0.0005 Score=65.35 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=33.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
.+++|+|||||.+|+++|.+|.+.+ .+|+++|+....
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G--~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERG--ADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcC--CEEEEEecCccC
Confidence 4689999999999999999999998 799999988654
No 274
>PRK12831 putative oxidoreductase; Provisional
Probab=97.19 E-value=0.0025 Score=62.48 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=32.2
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
...++|+|||+|..|+.+|..|.+.+ .+|+++.+.+
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~G--a~Vtlv~r~~ 314 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLG--AEVHIVYRRS 314 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcC--CEEEEEeecC
Confidence 35689999999999999999999997 8899998764
No 275
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.19 E-value=0.0013 Score=62.09 Aligned_cols=87 Identities=26% Similarity=0.193 Sum_probs=56.6
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCe-EEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~-v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
.++++|||+|+.|+.+|..|.+.+ .+ |+|+++.+.. ..+. .. ...+.++..+|+++++..+..
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g--~~~Vtvi~~~~~~-------~~~~---~~----~~~~~l~~~gi~i~~~~~v~~ 235 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLG--AEKVYLAYRRTIN-------EAPA---GK----YEIERLIARGVEFLELVTPVR 235 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeecchh-------hCCC---CH----HHHHHHHHcCCEEeeccCcee
Confidence 579999999999999999998876 65 9999876421 0011 11 122345667888877653210
Q ss_pred --------EEec---------------------ccceeccCeEEEeccCCCCCC
Q 019876 98 --------SVSL---------------------SELRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~---------------------~~~~~~yd~lIlATGs~~p~~ 122 (334)
.+.+ +...+++|.||+|+|.. |..
T Consensus 236 i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~-p~~ 288 (352)
T PRK12770 236 IIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI-PTP 288 (352)
T ss_pred eecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccC-CCc
Confidence 1111 11246899999999984 543
No 276
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.18 E-value=6.4e-05 Score=64.35 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=36.3
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
..+|+|||+|.+|++||+++.++.|+.+|.|||..-.+||
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG 115 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG 115 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence 4699999999999999999999889999999999877654
No 277
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.17 E-value=0.00053 Score=67.21 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=32.2
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..+|||||+|+||++||..+++.+ .+|+|+|+.+.
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G--~~V~vlEk~~~ 38 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAG--ASVLLLEAAPR 38 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 469999999999999999999997 99999999863
No 278
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.16 E-value=0.00049 Score=66.22 Aligned_cols=34 Identities=41% Similarity=0.559 Sum_probs=31.2
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
|+|+|||||.+|+++|.+|++.+ .+|+|+|+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g--~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG--HEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCCc
Confidence 58999999999999999999987 89999999753
No 279
>PLN03000 amine oxidase
Probab=97.16 E-value=0.00057 Score=70.86 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=37.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~ 60 (334)
+..+|+|||||++|+.||..|.+.+ .+|+|+|+++.+||.+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G--~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFG--FKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCC--CcEEEEEccCcCCCCc
Confidence 4689999999999999999999987 8999999998887754
No 280
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.15 E-value=0.00062 Score=67.57 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=33.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
..++|+|||||..|+++|..|++.| ++|+|+|+++..
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG--l~V~LvEk~d~~ 41 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRG--LSVLLCEQDDLA 41 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCC
Confidence 3579999999999999999999997 999999998653
No 281
>PRK07121 hypothetical protein; Validated
Probab=97.15 E-value=0.00058 Score=67.48 Aligned_cols=39 Identities=33% Similarity=0.387 Sum_probs=34.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
...+|||||+|.||++||..+++.+ .+|+|+|+.+..||
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G--~~VillEK~~~~gG 57 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAG--ARVLVLERAAGAGG 57 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCC
Confidence 3579999999999999999999997 99999999876544
No 282
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.13 E-value=0.00053 Score=69.82 Aligned_cols=36 Identities=31% Similarity=0.522 Sum_probs=32.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhhc-CCCCeEEEEcCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPT 55 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~-~~~~~v~vie~~~~ 55 (334)
...+|+||||||+|+.+|..|++. | ++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~G--i~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPD--ITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCC--CcEEEEEcCCC
Confidence 467999999999999999999995 6 99999998753
No 283
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.13 E-value=0.00055 Score=67.43 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=32.4
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
.+|+|||||.+|+++|..|++..|+.+|+|+|+++.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 479999999999999999999866799999999753
No 284
>PRK12839 hypothetical protein; Provisional
Probab=97.13 E-value=0.0007 Score=68.09 Aligned_cols=43 Identities=28% Similarity=0.334 Sum_probs=37.0
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc
Q 019876 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (334)
Q Consensus 15 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~ 59 (334)
......+|+|||+|.+|++||..+.+.+ .+|+|+|+.+.+||.
T Consensus 4 ~~~~~~dv~ViG~G~aG~~aa~~~~~~g--~~v~~iek~~~~gg~ 46 (572)
T PRK12839 4 SMTHTYDVVVVGSGAGGLSAAVAAAYGG--AKVLVVEKASTCGGA 46 (572)
T ss_pred CcCCcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCcc
Confidence 3445689999999999999999999987 999999998776654
No 285
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.11 E-value=0.00067 Score=65.12 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=36.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g 57 (334)
.+++|+|||||..|+++|..|.+..|+++|+|+|+.+.++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 4579999999999999999999999899999999987653
No 286
>PTZ00367 squalene epoxidase; Provisional
Probab=97.11 E-value=0.00066 Score=68.03 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=32.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
..++|+|||||++|+++|..|++.| .+|+|+|+.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G--~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQG--RKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcC--CEEEEEcccc
Confidence 4679999999999999999999987 9999999875
No 287
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.11 E-value=0.00071 Score=67.06 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=33.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
...+|+|||||..|+++|..|.++| ++|+|+|+.+..
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG--~~V~LlEk~d~~ 41 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRG--LKVLLCEKDDLA 41 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCC--CcEEEEECCCCC
Confidence 4579999999999999999999997 999999998654
No 288
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.11 E-value=0.00074 Score=66.59 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=34.7
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
.....+|+|||||..|+++|.+|++.++..+|+|+|+.+.
T Consensus 42 ~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 42 GSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred cCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 3456899999999999999999999865679999999853
No 289
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.11 E-value=0.0018 Score=59.04 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=32.9
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~ 59 (334)
.+||||+|.||++|+..+...+ -.|+++|+....||.
T Consensus 11 pvvVIGgGLAGLsasn~iin~g--g~V~llek~~s~GGN 47 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKG--GIVILLEKAGSIGGN 47 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcC--CeEEEEeccCCcCCc
Confidence 6999999999999999999987 569999998777663
No 290
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.11 E-value=0.00067 Score=64.13 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=31.0
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
.+|+|||||.+|+++|.+|++.+ .+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G--~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRG--LSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 37999999999999999999987 89999999754
No 291
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.08 E-value=0.00063 Score=65.49 Aligned_cols=34 Identities=29% Similarity=0.289 Sum_probs=31.1
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
.+|+|||||++|+.||..|++.| .+|+|||+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G--~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAG--VPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CcEEEEecccc
Confidence 37999999999999999999997 99999997655
No 292
>PLN02976 amine oxidase
Probab=97.07 E-value=0.00076 Score=72.72 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=39.0
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~ 61 (334)
....++|+|||||++|+++|..|.+.+ .+|+|||+.+.+||.+.
T Consensus 690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G--~~V~VlEa~~~vGGri~ 733 (1713)
T PLN02976 690 SVDRKKIIVVGAGPAGLTAARHLQRQG--FSVTVLEARSRIGGRVY 733 (1713)
T ss_pred cCCCCcEEEECchHHHHHHHHHHHHCC--CcEEEEeeccCCCCcee
Confidence 345689999999999999999999987 89999999988888754
No 293
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.04 E-value=0.00076 Score=67.01 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=33.0
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
..+|||||+| +|++||..+++.+ .+|+|+|+.+..||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G--~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREG--LSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 5699999999 9999999999987 99999999876443
No 294
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.04 E-value=0.003 Score=61.63 Aligned_cols=75 Identities=20% Similarity=0.147 Sum_probs=52.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
+.++++|+|+|.+|+.+|..|++.| ++|+++|+... ..+ ....+.+...+++++.+....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G--~~V~~~d~~~~----------------~~~-~~~~~~l~~~~~~~~~~~~~~- 63 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG--AKVILTDEKEE----------------DQL-KEALEELGELGIELVLGEYPE- 63 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCch----------------HHH-HHHHHHHHhcCCEEEeCCcch-
Confidence 4579999999999999999999998 99999988641 011 111222345577765544332
Q ss_pred EEecccceeccCeEEEeccC
Q 019876 98 SVSLSELRQLYHVVVLAYGA 117 (334)
Q Consensus 98 ~v~~~~~~~~yd~lIlATGs 117 (334)
.....+|.||+++|.
T Consensus 64 -----~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 64 -----EFLEGVDLVVVSPGV 78 (450)
T ss_pred -----hHhhcCCEEEECCCC
Confidence 122368999999997
No 295
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.03 E-value=0.00081 Score=67.91 Aligned_cols=36 Identities=33% Similarity=0.487 Sum_probs=32.3
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
+.+|+|||+|.||++||..+++.+ .+|+|+|+.+..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G--~~V~lieK~~~~ 38 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAG--VHVDLFSLVPVK 38 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcC--CcEEEEEccCCC
Confidence 458999999999999999999987 999999987653
No 296
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.02 E-value=0.00097 Score=65.19 Aligned_cols=36 Identities=31% Similarity=0.535 Sum_probs=29.0
Q ss_pred eEEEECCchHHHHHHHHHhhcCCC-CeEEEEcCCCCC
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQE-AQVDIIDRLPTP 56 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~-~~v~vie~~~~~ 56 (334)
||+|||||+||..+|..|++.++. .+|+|||+...+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 699999999999999999999865 899999987543
No 297
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.02 E-value=0.0036 Score=62.29 Aligned_cols=86 Identities=15% Similarity=0.204 Sum_probs=59.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhh-cCCcEEEeCeEEc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQ-HERCSFFGNVTLG 96 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~-~~~i~~~~~~~v~ 96 (334)
..++|+|||+|+.|+.+|..|...+ .+|+|+++.+.+. +. . .+...+. ..||+++.++.+.
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~--~~Vtlv~~~~~l~--------~~----~----~l~~~l~~~~gI~i~~~~~v~ 411 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIV--KHVTVLEFAPELK--------AD----Q----VLQDKLRSLPNVTIITNAQTT 411 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEEECcccc--------cc----H----HHHHHHhcCCCcEEEECcEEE
Confidence 4579999999999999999999886 8999998775431 11 1 1223333 3589998886542
Q ss_pred e---------EEeccc------ceeccCeEEEeccCCCCCC
Q 019876 97 S---------SVSLSE------LRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 97 ~---------~v~~~~------~~~~yd~lIlATGs~~p~~ 122 (334)
. .+.+.+ ..+.+|.+++|+|. .|..
T Consensus 412 ~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~-~p~~ 451 (517)
T PRK15317 412 EVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGL-VPNT 451 (517)
T ss_pred EEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECC-ccCc
Confidence 1 122221 13579999999998 4654
No 298
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.02 E-value=0.00078 Score=65.49 Aligned_cols=37 Identities=41% Similarity=0.518 Sum_probs=32.0
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
+|||||+|.||++||..+++.+ ..+|+|+|+.+..||
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G-~~~V~vlEk~~~~gg 37 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAG-AANVVLLEKMPVIGG 37 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CccEEEEecCCCCCC
Confidence 6999999999999999999974 279999999876544
No 299
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.01 E-value=0.0018 Score=59.65 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=71.2
Q ss_pred cccCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEe
Q 019876 12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFG 91 (334)
Q Consensus 12 ~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (334)
|....+.+++++|||||+.++..|--++..+ .++.++=|.+.+ .-+| .+.+.....+.++..||+++.
T Consensus 182 ff~Lee~Pkr~vvvGaGYIavE~Agi~~gLg--sethlfiR~~kv--------LR~F--D~~i~~~v~~~~~~~ginvh~ 249 (478)
T KOG0405|consen 182 FFDLEEQPKRVVVVGAGYIAVEFAGIFAGLG--SETHLFIRQEKV--------LRGF--DEMISDLVTEHLEGRGINVHK 249 (478)
T ss_pred ccchhhcCceEEEEccceEEEEhhhHHhhcC--CeeEEEEecchh--------hcch--hHHHHHHHHHHhhhcceeecc
Confidence 4455567899999999999999999999997 888888776542 1222 345666677788889999998
Q ss_pred CeEEceEEecc---------ccee-ccCeEEEeccCCCCCCC
Q 019876 92 NVTLGSSVSLS---------ELRQ-LYHVVVLAYGAESDRAL 123 (334)
Q Consensus 92 ~~~v~~~v~~~---------~~~~-~yd~lIlATGs~~p~~~ 123 (334)
++.+...+... .+.+ .+|.|+.|+|- .|...
T Consensus 250 ~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR-~Pntk 290 (478)
T KOG0405|consen 250 NSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGR-KPNTK 290 (478)
T ss_pred cccceeeeecCCCceEEEEeccccccccEEEEEecC-CCCcc
Confidence 87764322221 2233 58999999997 46553
No 300
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.99 E-value=0.00098 Score=67.36 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=32.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
...+|+|||+|.||+.||..+++.+ .+|+|+|+...
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G--~~V~vleK~~~ 46 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAG--LSVAVLSKVFP 46 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCC--CcEEEEeccCC
Confidence 4579999999999999999999986 89999999753
No 301
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.98 E-value=0.0045 Score=60.58 Aligned_cols=87 Identities=20% Similarity=0.181 Sum_probs=58.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
..++|+|||+|..|+.+|..|.+.+ . +|+++++.+.. .. |.. .. ..+.+.+.||+++.++.+.
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G--~~~Vtlv~~~~~~------~~-~~~---~~----~~~~~~~~GV~i~~~~~v~ 335 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLG--AESVTIVYRRGRE------EM-PAS---EE----EVEHAKEEGVEFEWLAAPV 335 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CCeEEEeeecCcc------cC-CCC---HH----HHHHHHHCCCEEEecCCcE
Confidence 4689999999999999999999886 5 89999876431 01 221 11 1234456789988765431
Q ss_pred e---------EEecc-------------------c-ceeccCeEEEeccCCCCC
Q 019876 97 S---------SVSLS-------------------E-LRQLYHVVVLAYGAESDR 121 (334)
Q Consensus 97 ~---------~v~~~-------------------~-~~~~yd~lIlATGs~~p~ 121 (334)
. .+.+. + ..+++|.||+|+|. .|.
T Consensus 336 ~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~-~p~ 388 (457)
T PRK11749 336 EILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ-TPN 388 (457)
T ss_pred EEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC-CCC
Confidence 1 02211 1 13589999999998 455
No 302
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.98 E-value=0.0068 Score=58.48 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=29.3
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
+|+|||+|.|||++|..|... .+|+|+.|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~---~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS---FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC---CcEEEEeCCCC
Confidence 799999999999999999886 79999998754
No 303
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.97 E-value=0.0011 Score=66.31 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=32.4
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
.++|+|||||..|+++|..|++.| ++|+|+|+.+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG--~~V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRG--LRCILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcC--CeEEEEECCCC
Confidence 579999999999999999999997 99999999754
No 304
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.97 E-value=0.0024 Score=60.03 Aligned_cols=40 Identities=35% Similarity=0.353 Sum_probs=30.9
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
....++|+|||||-++...+..|.+.++..+|+++-+.+.
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 3467899999999999999999999986679999998754
No 305
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.96 E-value=0.0012 Score=66.36 Aligned_cols=39 Identities=28% Similarity=0.392 Sum_probs=34.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
...+|+|||+|++|++||..+++.+ .+|+|+|+.+.+||
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G--~~v~llEk~~~~gG 44 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRG--LSTVVVEKAPHYGG 44 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCCc
Confidence 3579999999999999999999987 99999999876554
No 306
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.95 E-value=0.00099 Score=67.11 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=33.7
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g 57 (334)
..+|+|||+|.||+.||..+++.+++.+|+|+||....+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~ 41 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMR 41 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence 358999999999999999999876668999999986543
No 307
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.95 E-value=0.001 Score=67.07 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=33.2
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
..+|+|||+|.||+.||..+++.+++.+|+|+||.+..
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~ 41 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM 41 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 35899999999999999999987666899999998653
No 308
>PRK08275 putative oxidoreductase; Provisional
Probab=96.95 E-value=0.0011 Score=66.64 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=32.9
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..+|+|||+|.||+.||..+++.+++.+|+|+|+.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4689999999999999999998755689999999865
No 309
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.94 E-value=0.001 Score=66.62 Aligned_cols=38 Identities=32% Similarity=0.354 Sum_probs=34.0
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC--CCcc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--TPFG 58 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~--~~gg 58 (334)
..+|+|||+|.||++||..+++.+ .+|+|+|+.+ ..||
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G--~~VivlEK~~~~~~GG 43 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAG--KRVLLLDQENEANLGG 43 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCCCC
Confidence 468999999999999999999997 9999999988 5555
No 310
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.94 E-value=0.0012 Score=67.76 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=31.5
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
.++|+|||||.+|+++|.+|++.| .+|+|+|+..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G--~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRG--WQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 369999999999999999999997 8999999975
No 311
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=96.93 E-value=0.0069 Score=54.62 Aligned_cols=109 Identities=21% Similarity=0.195 Sum_probs=69.5
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccC-----------CCHHHHHHHH
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA-----------CTAKELREIL 228 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~-----------~~~~~~~~~l 228 (334)
-.|+|||+|..|+-+|..|++ .|. +|.++++...+... ...+...+.|
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~--------------------~G~-~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l 84 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAK--------------------AGL-KVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEIL 84 (257)
T ss_pred CCEEEECccHHHHHHHHHHHh--------------------CCC-eEEEEecCCCCCCccccCccccccccchHHHHHHH
Confidence 579999999999999999986 566 59999988643211 1124455667
Q ss_pred cCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEE
Q 019876 229 GIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVH 308 (334)
Q Consensus 229 ~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~ 308 (334)
+..|+.+......+- ..+. .++.+.|.+.+. +.|+++++++.+..+. -++++++.+|.
T Consensus 85 ~~~gv~~~~~~~g~~--~vd~---------~~l~~~L~~~A~---------~~Gv~I~~~t~V~dl~--~~~~g~V~Gvv 142 (257)
T PRK04176 85 DEFGIRYKEVEDGLY--VADS---------VEAAAKLAAAAI---------DAGAKIFNGVSVEDVI--LREDPRVAGVV 142 (257)
T ss_pred HHCCCCceeecCcce--eccH---------HHHHHHHHHHHH---------HcCCEEEcCceeceee--EeCCCcEEEEE
Confidence 777776654322110 0010 112233333332 5699999999999987 21234899988
Q ss_pred EEE
Q 019876 309 FEK 311 (334)
Q Consensus 309 ~~~ 311 (334)
+.+
T Consensus 143 ~~~ 145 (257)
T PRK04176 143 INW 145 (257)
T ss_pred Ecc
Confidence 754
No 312
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.92 E-value=0.0012 Score=62.11 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=32.6
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
..+|+|||||.+|+++|..|.++| ++++|+|+...+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G--~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKG--IDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcC--CeEEEEeecccc
Confidence 468999999999999999999998 999999987554
No 313
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=96.92 E-value=0.0056 Score=55.08 Aligned_cols=108 Identities=20% Similarity=0.243 Sum_probs=68.0
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccC-------C----CHHHHHHHH
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA-------C----TAKELREIL 228 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~-------~----~~~~~~~~l 228 (334)
-.|+|||+|..|+-+|..|++ .|. +|.+++|...+... | ......+.+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~--------------------~G~-~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l 80 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAK--------------------NGL-KVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEIL 80 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEecCCCCCccccCCCcceecccccchHHHHH
Confidence 469999999999999999996 565 69999998654211 1 113345566
Q ss_pred cCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCC--CeeE
Q 019876 229 GIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG--HVSG 306 (334)
Q Consensus 229 ~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~--~v~~ 306 (334)
+..|+.+......+- ..+. ..+.+.|.+.+. +.|+++++++.+.++. - .++ ++.+
T Consensus 81 ~~~gi~~~~~~~g~~--~~~~---------~el~~~L~~~a~---------e~GV~I~~~t~V~dli--~-~~~~~~V~G 137 (254)
T TIGR00292 81 DEFGIRYEDEGDGYV--VADS---------AEFISTLASKAL---------QAGAKIFNGTSVEDLI--T-RDDTVGVAG 137 (254)
T ss_pred HHCCCCeeeccCceE--EeeH---------HHHHHHHHHHHH---------HcCCEEECCcEEEEEE--E-eCCCCceEE
Confidence 666766543322110 0010 112233333332 5689999999999987 3 234 6999
Q ss_pred EEEEE
Q 019876 307 VHFEK 311 (334)
Q Consensus 307 v~~~~ 311 (334)
|.+..
T Consensus 138 Vv~~~ 142 (254)
T TIGR00292 138 VVINW 142 (254)
T ss_pred EEeCC
Confidence 98854
No 314
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.88 E-value=0.0012 Score=66.54 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=30.9
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
+|+|||+|.||++||..+++.+ .+|+|+|+.+..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G--~~V~lleK~~~~ 34 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAG--LNTAVISKVYPT 34 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCC--CcEEEEeccCCC
Confidence 5999999999999999999987 999999997643
No 315
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.87 E-value=0.0014 Score=65.85 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=34.8
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~ 59 (334)
..+|+|||+|.+|++||..+++.+ .+|+|+|+.+..||.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G--~~v~liEk~~~~gG~ 44 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSG--LEPLIVEKQDKVGGS 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCce
Confidence 568999999999999999999997 999999998766553
No 316
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=96.86 E-value=0.0015 Score=63.52 Aligned_cols=42 Identities=21% Similarity=0.105 Sum_probs=38.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~ 61 (334)
...+|+|||+|.+|+.+|..|.+.| .+|.++|+++..||.+.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~G--kkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNG--KKVLHMDRNPYYGGESA 44 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCC--CEEEEecCCCCcCcccc
Confidence 3579999999999999999999998 99999999999998764
No 317
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.85 E-value=0.0014 Score=66.12 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=34.3
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
..+|||||+|.||++||..+++.+ .+|+|+|+.+..||
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G--~~VivlEk~~~~gG 48 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARG--LDTLVVEKSAHFGG 48 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCC--CcEEEEEcCCCCCc
Confidence 469999999999999999999987 99999999876554
No 318
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.85 E-value=0.0014 Score=66.75 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
..+|+|||+|.||+.||..+++.+ .+|+|+|+.+..
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G--~~V~lieK~~~~ 43 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERG--LRVAVVCKSLFG 43 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCC--CCEEEEeccCCC
Confidence 468999999999999999999987 999999998654
No 319
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.85 E-value=0.0016 Score=65.41 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=35.8
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~ 60 (334)
....+|||||+| +|++||..+++.+ .+|+|+|+.+..||..
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G--~~v~v~Ek~~~~GG~~ 54 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELG--LSVLIVEKSSYVGGST 54 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCC--CcEEEEecCCCCcCcc
Confidence 346899999999 8999999999987 9999999988777643
No 320
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=96.84 E-value=0.0017 Score=63.97 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=33.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
...+|||||||.+|+++|..|++..|+.+|+|+|+.+.
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~ 42 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDS 42 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCC
Confidence 45699999999999999999999977899999999434
No 321
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.84 E-value=0.0016 Score=66.25 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=33.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
..++|+|||||..|.++|..|.+.| ++|+|+|+.+..
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rG--l~V~LvE~~d~a 106 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRG--LRVGLVEREDFS 106 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCC--CEEEEEeccccC
Confidence 4589999999999999999999997 999999998643
No 322
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.82 E-value=0.0064 Score=63.33 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=31.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCe-EEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~-v~vie~~~ 54 (334)
..++|+|||+|..|+.+|..+.+.+ .+ |+++++++
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~G--a~~Vtlv~r~~ 604 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLG--AERVTIVYRRS 604 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcC--CCeEEEeeecC
Confidence 4589999999999999999999997 66 99998764
No 323
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.80 E-value=0.0017 Score=65.33 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=31.8
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..+|+|||+|.||++||..+.+.+ .+|+|+||.+.
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G--~~V~lveK~~~ 39 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAG--FKVAVISKVFP 39 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCC--CcEEEEEccCC
Confidence 469999999999999999999986 99999999854
No 324
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.78 E-value=0.0083 Score=58.99 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=30.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
..++|+|||+|+.|+.+|..+.+.+ ..+|++++..+.+
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~g-a~~Vt~~~~~~~~ 317 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQG-AKSVTQRDIMPMP 317 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEccccCCC
Confidence 4689999999999999999988886 2378888766543
No 325
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.76 E-value=0.012 Score=54.01 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=31.9
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..+++|||+|.||+.||..|+..+ .+|.|+|++..
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG--~~V~ildQEge 39 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAG--KRVLILDQEGE 39 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcC--ceEEEEccccc
Confidence 468999999999999999999997 99999998753
No 326
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.75 E-value=0.0017 Score=65.90 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=32.9
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g 57 (334)
..+|+|||+|.||+.||..+++.| .+|+|+||.+..+
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G--~~V~lveK~~~~~ 65 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELG--YKTACISKLFPTR 65 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcC--CcEEEEeccCCCC
Confidence 468999999999999999999986 9999999986543
No 327
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.73 E-value=0.0021 Score=65.52 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=31.8
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
..+|+|||+|.||++||..+++.+ .+|+|+++...+
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G--~~VilieK~~~~ 70 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELG--YNVKVFCYQDSP 70 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcC--CcEEEEecCCCC
Confidence 469999999999999999999987 999999986443
No 328
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.72 E-value=0.0016 Score=59.68 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=29.2
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
+++||||+|++|..+|..|.+.+ +.+|.|+|+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~-~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAG-NKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTST-TS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCC-CCcEEEEEcccc
Confidence 48999999999999999999874 579999999864
No 329
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.71 E-value=0.0021 Score=63.91 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=35.0
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~ 60 (334)
++|+|||+||+|+.+|.+|.+.+ ++|.|||+....|+.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g--~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAG--LKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCC--CeEEEEeccCccCCCc
Confidence 48999999999999999999997 9999999998776544
No 330
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.70 E-value=0.0019 Score=65.32 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
...+|+|||+|.||++||..+++.+ .+|+|+||...
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G--~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAG--LKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CcEEEEEccCC
Confidence 3468999999999999999999986 89999999754
No 331
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.70 E-value=0.0019 Score=62.74 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=31.2
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
..+|+|||+|.||++||..+. .+ .+|+|+||.+..+|
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G--~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KD--LKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cC--CCEEEEecCCCCCC
Confidence 469999999999999999974 45 99999999866443
No 332
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.68 E-value=0.002 Score=65.51 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=32.3
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
..+|+|||+|.||+.||..+++.+ .+|+|+||....
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G--~~VilveK~~~~ 85 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHG--FNTACITKLFPT 85 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcC--CcEEEEEcCCCC
Confidence 368999999999999999999987 999999998653
No 333
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.67 E-value=0.002 Score=65.29 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=32.0
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..+|+|||+|.||+.||..+++.+++.+|+|+|+.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 4689999999999999999998723399999999764
No 334
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.66 E-value=0.0024 Score=64.42 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=32.9
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCC-CCeEEEEcCCCCCc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPF 57 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~-~~~v~vie~~~~~g 57 (334)
..+|+|||+|.||++||..+++.++ +.+|+|+|+.+..+
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~ 44 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR 44 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence 4589999999999999999999862 27999999986543
No 335
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.66 E-value=0.0022 Score=64.84 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=32.2
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
..+|+|||+|.||++||..+++.+ .+|+|+||....
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G--~~V~lleK~~~~ 42 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSG--QSCALLSKVFPT 42 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcC--CcEEEEEccCCC
Confidence 468999999999999999999986 999999998543
No 336
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.65 E-value=0.0061 Score=52.91 Aligned_cols=110 Identities=22% Similarity=0.228 Sum_probs=65.8
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccC-------CCH----HHHHHHH
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA-------CTA----KELREIL 228 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~-------~~~----~~~~~~l 228 (334)
-.|+|||+|.+|+-+|..|++ .|. +|.+++++..+--. |.. ++...+|
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~--------------------~g~-kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL 76 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAK--------------------AGL-KVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEIL 76 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHH--------------------HTS--EEEEESSSS-BTTTTS-CTT---EEEETTTHHHH
T ss_pred CCEEEECCChhHHHHHHHHHH--------------------CCC-eEEEEecCCCCCccccccccccchhhhhhhHHHHH
Confidence 579999999999999999997 576 59999988433221 111 4556677
Q ss_pred cCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEE
Q 019876 229 GIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVH 308 (334)
Q Consensus 229 ~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~ 308 (334)
+.-||++.-..+.+- . .+..+ -...++.... ..|+++.....+..+.- - ++++|.||.
T Consensus 77 ~elgi~y~~~~~g~~-v-~d~~~--------~~s~L~s~a~----------~aGakifn~~~vEDvi~-r-~~~rV~GvV 134 (230)
T PF01946_consen 77 DELGIPYEEYGDGYY-V-ADSVE--------FTSTLASKAI----------DAGAKIFNLTSVEDVIV-R-EDDRVAGVV 134 (230)
T ss_dssp HHHT---EE-SSEEE-E-S-HHH--------HHHHHHHHHH----------TTTEEEEETEEEEEEEE-E-CSCEEEEEE
T ss_pred HhCCceeEEeCCeEE-E-EcHHH--------HHHHHHHHHh----------cCCCEEEeeeeeeeeEE-E-cCCeEEEEE
Confidence 777887764443221 1 11111 1122333332 57999999999999862 2 237999999
Q ss_pred EEEe
Q 019876 309 FEKT 312 (334)
Q Consensus 309 ~~~~ 312 (334)
+.++
T Consensus 135 iNWt 138 (230)
T PF01946_consen 135 INWT 138 (230)
T ss_dssp EEEH
T ss_pred EEeh
Confidence 9985
No 337
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.65 E-value=0.0026 Score=64.15 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=35.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~ 59 (334)
...+|+|||+|.+|+.+|..+.+.+ .+|+|||+.+..||.
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g--~~v~~iek~~~~gg~ 50 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHG--LKVIVVEKDPVFGGT 50 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCcc
Confidence 4579999999999999999999987 999999998766553
No 338
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.0029 Score=55.84 Aligned_cols=74 Identities=20% Similarity=0.213 Sum_probs=49.4
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhh-cCCcEEEeCeEEceE
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQ-HERCSFFGNVTLGSS 98 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~-~~~i~~~~~~~v~~~ 98 (334)
|+++|||+|..|...|..|.+.+ .+|+++|+++. ...+++. ......+.+.....+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~---------------------~~~~~~~~~~~~~~v~gd~t~~~ 57 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDEE---------------------RVEEFLADELDTHVVIGDATDED 57 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCHH---------------------HHHHHhhhhcceEEEEecCCCHH
Confidence 68999999999999999999997 99999998742 1112122 233444333222211
Q ss_pred Eeccc-ceeccCeEEEeccC
Q 019876 99 VSLSE-LRQLYHVVVLAYGA 117 (334)
Q Consensus 99 v~~~~-~~~~yd~lIlATGs 117 (334)
+ +.+ +-..+|.+|.+||.
T Consensus 58 ~-L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 58 V-LEEAGIDDADAVVAATGN 76 (225)
T ss_pred H-HHhcCCCcCCEEEEeeCC
Confidence 1 222 23479999999998
No 339
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.62 E-value=0.0058 Score=53.15 Aligned_cols=34 Identities=35% Similarity=0.370 Sum_probs=31.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
..++|+|||||.+|...+..|.+.+ .+|+|++++
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCC
Confidence 3579999999999999999999987 999999875
No 340
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.61 E-value=0.0068 Score=59.32 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=51.7
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceEEe
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVS 100 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~v~ 100 (334)
+|+|||.|++|+++|..|.+.| ++|+++|+++.+ . .......++..|+.++.+...... .
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~~~----------~-------~~~~~~~l~~~gi~~~~g~~~~~~-~ 61 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG--WEVVVSDRNDSP----------E-------LLERQQELEQEGITVKLGKPLELE-S 61 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC--CEEEEECCCCch----------h-------hHHHHHHHHHcCCEEEECCccchh-h
Confidence 6999999999999999999997 999999987542 1 011122345568888765432210 0
Q ss_pred cccceeccCeEEEeccC
Q 019876 101 LSELRQLYHVVVLAYGA 117 (334)
Q Consensus 101 ~~~~~~~yd~lIlATGs 117 (334)
.......+|.||++.|.
T Consensus 62 ~~~~~~~~d~vv~s~gi 78 (459)
T PRK02705 62 FQPWLDQPDLVVVSPGI 78 (459)
T ss_pred hhHHhhcCCEEEECCCC
Confidence 00112368999998887
No 341
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.58 E-value=0.0029 Score=63.43 Aligned_cols=38 Identities=34% Similarity=0.459 Sum_probs=32.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
...+|+|||+|.||++||..+. .+ .+|+|+||.+..+|
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G--~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SH--LRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cC--CCEEEEEccCCCCC
Confidence 3569999999999999999985 35 89999999876443
No 342
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.58 E-value=0.0027 Score=64.87 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=32.2
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
..+|+|||+|.||+.||..+++.| ++|+|+++.+..
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G--~~VivleK~~~~ 40 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRG--LDTIVLSLVPAK 40 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcC--CCEEEEeCCCCC
Confidence 468999999999999999999987 999999987653
No 343
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.56 E-value=0.0028 Score=62.89 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=31.7
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
..+|+|||+|.||+.||..+.+ + .+|+|+|+.+..+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g--~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-E--YNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-C--CCEEEEeccCCCCC
Confidence 4699999999999999999975 5 89999999875433
No 344
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.55 E-value=0.0025 Score=54.51 Aligned_cols=86 Identities=19% Similarity=0.130 Sum_probs=46.4
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceEE
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSV 99 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~v 99 (334)
|+|.|||.|+.|+..|..|++.| ++|+.+|.++..-..++.|..|-. . ..+...+.+.....+..+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G--~~V~g~D~~~~~v~~l~~g~~p~~-E-~~l~~ll~~~~~~~~l~~t~-------- 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG--HQVIGVDIDEEKVEALNNGELPIY-E-PGLDELLKENVSAGRLRATT-------- 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT--SEEEEE-S-HHHHHHHHTTSSSS--C-TTHHHHHHHHHHTTSEEEES--------
T ss_pred CEEEEECCCcchHHHHHHHHhCC--CEEEEEeCChHHHHHHhhcccccc-c-cchhhhhccccccccchhhh--------
Confidence 69999999999999999999998 999999988654333444443332 1 12333344444333333211
Q ss_pred ecccceeccCeEEEeccC
Q 019876 100 SLSELRQLYHVVVLAYGA 117 (334)
Q Consensus 100 ~~~~~~~~yd~lIlATGs 117 (334)
.....-..+|.++||.+.
T Consensus 69 ~~~~ai~~adv~~I~VpT 86 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPT 86 (185)
T ss_dssp EHHHHHHH-SEEEE----
T ss_pred hhhhhhhccceEEEecCC
Confidence 111112379999999997
No 345
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.51 E-value=0.018 Score=55.07 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=67.4
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec-CccccCCC----HHHHHHHHcCCce-
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR-GPVQAACT----AKELREILGIKNL- 233 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~-~~~~~~~~----~~~~~~~l~~~gv- 233 (334)
..|+|||||.+|+-+|..|++ .|. +|+|++++ ..+..... .+.-.++|+.-|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~--------------------~G~-~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~ 61 (387)
T COG0654 3 LDVAIVGAGPAGLALALALAR--------------------AGL-DVTLLERAPRELLERGRGIALSPNALRALERLGLW 61 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEccCccccccCceeeeecHhHHHHHHHcCCh
Confidence 579999999999999999997 675 59999998 33322221 1233334444443
Q ss_pred E-------------EEEccC--ccCCCCCch--hhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeec
Q 019876 234 Y-------------VHIRED--DLIKSPTDE--EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE 296 (334)
Q Consensus 234 ~-------------~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~ 296 (334)
. ...... ......... ......-....+.+.|.+.+. ...+|+++++++++.+.
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--------~~~~v~~~~~~~v~~~~- 132 (387)
T COG0654 62 DRLEALGVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAAR--------ALPNVTLRFGAEVEAVE- 132 (387)
T ss_pred hhhhhccCCceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHh--------hCCCcEEEcCceEEEEE-
Confidence 1 111111 011111110 011111223444455666553 24559999999999998
Q ss_pred cccCCCCeeEEEEE-Ee
Q 019876 297 SNERSGHVSGVHFE-KT 312 (334)
Q Consensus 297 ~~~~~~~v~~v~~~-~~ 312 (334)
. +++.++ +.+. ++
T Consensus 133 -~-~~~~v~-v~l~~dG 146 (387)
T COG0654 133 -Q-DGDGVT-VTLSFDG 146 (387)
T ss_pred -E-cCCceE-EEEcCCC
Confidence 3 245676 7777 44
No 346
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.51 E-value=0.0037 Score=63.03 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=35.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~ 60 (334)
...+|+|||+|++|+.||..+.+.+ .+|+|+|+.+.+||..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g--~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAG--LKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCCcc
Confidence 3579999999999999999999987 9999999987766644
No 347
>PRK07236 hypothetical protein; Provisional
Probab=96.51 E-value=0.016 Score=55.30 Aligned_cols=55 Identities=24% Similarity=0.167 Sum_probs=39.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCC-----HHHHHHHHcCCc
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACT-----AKELREILGIKN 232 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~-----~~~~~~~l~~~g 232 (334)
...+|+|||||.+|+.+|..|++ .|. +|+|+++++....... .+...+.|+..|
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg 63 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR--------------------AGW-DVDVFERSPTELDGRGAGIVLQPELLRALAEAG 63 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcC
Confidence 34789999999999999999996 676 5999999864332211 244455555544
Q ss_pred e
Q 019876 233 L 233 (334)
Q Consensus 233 v 233 (334)
+
T Consensus 64 ~ 64 (386)
T PRK07236 64 V 64 (386)
T ss_pred C
Confidence 4
No 348
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.49 E-value=0.0036 Score=68.12 Aligned_cols=39 Identities=36% Similarity=0.405 Sum_probs=35.0
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~ 59 (334)
..+|||||+|.||++||..+++.| .+|+|+|+.+..||.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~G--a~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCG--AQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CcEEEEEccCCCCCc
Confidence 478999999999999999999987 999999998776653
No 349
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.47 E-value=0.0048 Score=58.73 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=44.3
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc-cccCCCCcchh
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDHPETK 72 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~-~~~~p~~~~~~ 72 (334)
++.++++|||+|..|+.||.+|.+.+ .+|+++|++...||... -.++|+++...
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g--~~V~vlerrhv~gGaavteeivpGfKfsr 66 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYG--QSVAVLERRHVIGGAAVTEEIVPGFKFSR 66 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcC--cceEEEEEeeecCcceeeehhccccccch
Confidence 56789999999999999999999997 99999999866655443 36778876543
No 350
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.46 E-value=0.0028 Score=64.22 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=29.2
Q ss_pred EEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 22 vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
|+|||+|.||++||..+++.+ .+|+|+|+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G--~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELG--YHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcC--CCEEEEEecC
Confidence 689999999999999999987 8999999987
No 351
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.46 E-value=0.016 Score=58.22 Aligned_cols=87 Identities=20% Similarity=0.151 Sum_probs=57.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+... . ...+. ...+...+|+++.+..+..
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g--~~Vtli~~~~~~~--------~----~~~~~---~~~~~~~gV~i~~~~~V~~ 204 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYA--SKVTVIVREPDFT--------C----AKLIA---EKVKNHPKIEVKFNTELKE 204 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccC--CEEEEEEeCCccc--------c----CHHHH---HHHHhCCCcEEEeCCEEEE
Confidence 4689999999999999999999886 8999999876420 1 11221 2233456899988876521
Q ss_pred -----E---Ee---cccce-----eccCe----EEEeccCCCCCC
Q 019876 98 -----S---VS---LSELR-----QLYHV----VVLAYGAESDRA 122 (334)
Q Consensus 98 -----~---v~---~~~~~-----~~yd~----lIlATGs~~p~~ 122 (334)
. +. ..+++ ..+|. |++|+|. .|..
T Consensus 205 i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~-~Pn~ 248 (555)
T TIGR03143 205 ATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGY-APSS 248 (555)
T ss_pred EEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCC-CCCh
Confidence 0 11 11221 13565 9999998 4654
No 352
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.40 E-value=0.0073 Score=58.03 Aligned_cols=38 Identities=21% Similarity=0.425 Sum_probs=33.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~ 216 (334)
..++++|||||..|+.+|..|++ .|.+ |++|++.+.+.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~--------------------~G~~-v~LVEKepsiG 160 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELAD--------------------MGFK-VYLVEKEPSIG 160 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHH--------------------cCCe-EEEEecCCccc
Confidence 46899999999999999999997 7885 99999987663
No 353
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.38 E-value=0.0032 Score=61.09 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=0.0
Q ss_pred CceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876 279 GQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (334)
Q Consensus 279 ~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~ 311 (334)
.+.||++++++.+.++. - ++++|++|.+.+
T Consensus 101 ~e~gv~v~~~t~v~~v~--~-~~~~i~~V~~~~ 130 (428)
T PF12831_consen 101 AEAGVEVLLGTRVVDVI--R-DGGRITGVIVET 130 (428)
T ss_dssp ---------------------------------
T ss_pred ccccccccccccccccc--c-cccccccccccc
Confidence 46899999999999998 4 357999999975
No 354
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.33 E-value=0.023 Score=60.45 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=31.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
..++|+|||||..|+-+|..+.+.+ .+|+++.+++
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~G--a~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLG--GNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEEecC
Confidence 4589999999999999999999997 7999998764
No 355
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.33 E-value=0.029 Score=55.10 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=31.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..++++|||+|..|+.+|..+.+.+ ..+|+|+++.+.
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~G-a~~Vtvv~r~~~ 317 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLG-AASVTCAYRRDE 317 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEEecCc
Confidence 3589999999999999999999886 137999987653
No 356
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.32 E-value=0.0046 Score=62.62 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=29.1
Q ss_pred eEEEECCchHHHHHHHHHh----hcCCCCeEEEEcCCCC
Q 019876 21 RVCVVGSGPAGFYTAEKTL----KAHQEAQVDIIDRLPT 55 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~----~~~~~~~v~vie~~~~ 55 (334)
+|+|||+|.||+.||..++ +.| .+|+|++|...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G--~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKG--LKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCC--CeEEEEEccCC
Confidence 5999999999999999998 455 89999999754
No 357
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.31 E-value=0.0057 Score=61.17 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=32.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
...+|+|||+|.||+.||..+.+. .+|+|+|+.+..+|
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~---~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH---RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC---CCEEEEeccCCCCC
Confidence 346999999999999999999874 79999999865433
No 358
>PRK07045 putative monooxygenase; Reviewed
Probab=96.28 E-value=0.031 Score=53.30 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=30.7
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
-+|+|||||.+|+-+|..|++ .|. +|+|+++++..
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~--------------------~G~-~v~v~E~~~~~ 40 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA--------------------RGH-SVTVVERAARN 40 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh--------------------cCC-cEEEEeCCCcc
Confidence 479999999999999999996 676 59999988754
No 359
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.22 E-value=0.006 Score=61.61 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=30.0
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..+|+|||+|.||++||..+++. .+|+|+||.+.
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~---~~VilleK~~~ 38 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR---ARTAVLTKLYP 38 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC---CCEEEEeCCCC
Confidence 46899999999999999999864 79999999754
No 360
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.21 E-value=0.033 Score=57.16 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=30.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
..++|+|||+|..|+.+|..+.+.+ ..+|+++.+.+
T Consensus 467 ~gk~VvVIGgG~~a~d~A~~a~r~g-a~~Vt~i~~~~ 502 (654)
T PRK12769 467 AGLNVVVLGGGDTAMDCVRTALRHG-ASNVTCAYRRD 502 (654)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcC-CCeEEEeEecC
Confidence 4579999999999999999998886 23699988764
No 361
>PLN02815 L-aspartate oxidase
Probab=96.21 E-value=0.0067 Score=61.27 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=31.3
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g 57 (334)
..+|+|||+|.||+.||..+++.+ +|+|+|+.+..+
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G---~VvlleK~~~~g 64 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG---TVAIITKDEPHE 64 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC---CEEEEECCCCCC
Confidence 469999999999999999998874 799999987543
No 362
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.14 E-value=0.013 Score=59.05 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=66.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc-
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG- 96 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~- 96 (334)
+..+-+|||+|--|+.+|..|...+ .+++|+.-.+.+ ....+...-...++..+++.|++++++..+.
T Consensus 144 ~~~~avVIGGGLLGlEaA~~L~~~G--m~~~Vvh~~~~l---------MerQLD~~ag~lL~~~le~~Gi~~~l~~~t~e 212 (793)
T COG1251 144 NKKKAVVIGGGLLGLEAARGLKDLG--MEVTVVHIAPTL---------MERQLDRTAGRLLRRKLEDLGIKVLLEKNTEE 212 (793)
T ss_pred ccCCcEEEccchhhhHHHHHHHhCC--CceEEEeecchH---------HHHhhhhHHHHHHHHHHHhhcceeecccchhh
Confidence 4566899999999999999999997 999998765432 1111222344456677788899998876532
Q ss_pred -------eEEecccce-eccCeEEEeccCCCCCC
Q 019876 97 -------SSVSLSELR-QLYHVVVLAYGAESDRA 122 (334)
Q Consensus 97 -------~~v~~~~~~-~~yd~lIlATGs~~p~~ 122 (334)
..+.+.++. +.+|-||.|+|. +|+.
T Consensus 213 i~g~~~~~~vr~~DG~~i~ad~VV~a~GI-rPn~ 245 (793)
T COG1251 213 IVGEDKVEGVRFADGTEIPADLVVMAVGI-RPND 245 (793)
T ss_pred hhcCcceeeEeecCCCcccceeEEEeccc-cccc
Confidence 234555655 489999999999 4654
No 363
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.0075 Score=57.83 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=32.2
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 15 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
.....++|||||||+||..||...++.| .+.+++..+
T Consensus 24 s~~~~~dVvVIGgGHAG~EAAaAaaR~G--a~TlLlT~~ 60 (679)
T KOG2311|consen 24 SSTSTYDVVVIGGGHAGCEAAAAAARLG--ARTLLLTHN 60 (679)
T ss_pred cCCCcccEEEECCCccchHHHHHHHhcC--CceEEeecc
Confidence 3356789999999999999999999997 888888765
No 364
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.12 E-value=0.0086 Score=58.96 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=35.9
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
....+|+|||||..|+.+|..++.+| ++|+|+|+.+...|
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RG--l~v~LvE~~D~AsG 49 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRG--LKVALVEKGDLASG 49 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCC--CeEEEEecCcccCc
Confidence 36689999999999999999999998 99999999976544
No 365
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.10 E-value=0.04 Score=58.48 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=31.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
..++|||||||..|+.+|..+.+.+...+|+++.+++
T Consensus 667 ~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 667 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 4689999999999999999988875113899998865
No 366
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.09 E-value=0.017 Score=56.61 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=31.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
..++|+|||+|.+|+..|..|.... .+|+++.+..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a--~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVA--KEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhC--CeEEEEEeec
Confidence 5689999999999999999999986 7999998764
No 367
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.07 E-value=0.063 Score=51.57 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=31.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
..+|+|||||..|+-+|..|++ .|. +|+|+++++..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD--------------------SGL-RIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc--------------------CCC-EEEEEecCCcc
Confidence 4679999999999999999996 676 59999998654
No 368
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.07 E-value=0.039 Score=56.55 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=31.3
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
...++|+|||+|..|+.+|..+.+.+ ..+|+|+.+++
T Consensus 321 ~~gk~VvVIGgG~~a~e~A~~l~~~G-a~~Vtlv~r~~ 357 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALRLG-AESVTILYRRT 357 (652)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEeeecC
Confidence 35689999999999999999999886 23699998765
No 369
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=96.05 E-value=0.018 Score=54.74 Aligned_cols=115 Identities=13% Similarity=0.288 Sum_probs=62.4
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEE-eecCccc-cCCCH-----------HHHHH-
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV-GRRGPVQ-AACTA-----------KELRE- 226 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv-~r~~~~~-~~~~~-----------~~~~~- 226 (334)
.|+|||||..|+|+|..+++ .|++ |.++ ++.+.+. .++.+ +|++.
T Consensus 1 DViVVGgG~AG~eAA~aaAr--------------------~G~~-V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidal 59 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR--------------------MGAK-VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDAL 59 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH--------------------TT---EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHT
T ss_pred CEEEECCCHHHHHHHHHHHH--------------------CCCC-EEEEeecccccccccchhhhccccccchhHHHhhh
Confidence 48999999999999999997 7875 8888 3333332 12222 22222
Q ss_pred ------HHcCCceEEEEccCccCCCCCchhhhhccHHHH-HHHHHHHHHHhccCCCCCCCceEEEEEeccccceeecccc
Q 019876 227 ------ILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQR-RVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNE 299 (334)
Q Consensus 227 ------~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~ 299 (334)
.....+|.+.+....- -++-.. .....++ +..+.+++.+. ...+|+++ ...+++|. -
T Consensus 60 gg~m~~~aD~~~i~~~~lN~sk--Gpav~a--~r~qvDr~~y~~~~~~~l~--------~~~nl~i~-~~~V~~l~--~- 123 (392)
T PF01134_consen 60 GGLMGRAADETGIHFRMLNRSK--GPAVHA--LRAQVDRDKYSRAMREKLE--------SHPNLTII-QGEVTDLI--V- 123 (392)
T ss_dssp T-SHHHHHHHHEEEEEEESTTS---GGCTE--EEEEE-HHHHHHHHHHHHH--------TSTTEEEE-ES-EEEEE--E-
T ss_pred hhHHHHHHhHhhhhhhcccccC--CCCccc--hHhhccHHHHHHHHHHHHh--------cCCCeEEE-EcccceEE--e-
Confidence 1223456665542211 111000 0001111 12233444543 35789996 67899997 4
Q ss_pred CCCCeeEEEEEEe
Q 019876 300 RSGHVSGVHFEKT 312 (334)
Q Consensus 300 ~~~~v~~v~~~~~ 312 (334)
++++|.+|.+.++
T Consensus 124 e~~~v~GV~~~~g 136 (392)
T PF01134_consen 124 ENGKVKGVVTKDG 136 (392)
T ss_dssp CTTEEEEEEETTS
T ss_pred cCCeEEEEEeCCC
Confidence 4789999999654
No 370
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.04 E-value=0.0087 Score=59.88 Aligned_cols=37 Identities=27% Similarity=0.494 Sum_probs=33.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
...+|+|||+|.||+.||..++..+ .+|+|+++.+..
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g--~~V~l~~K~~~~ 41 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAG--LKVALLSKAPPK 41 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcC--CcEEEEEccccC
Confidence 4579999999999999999999997 999999997653
No 371
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.04 E-value=0.009 Score=55.89 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=32.1
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
....+|+|||||.+|-+.|..|.+.| -+|+||||+
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdG--RrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDG--RRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCC--cEEEEEecc
Confidence 34578999999999999999999997 999999987
No 372
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.99 E-value=0.043 Score=58.90 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=59.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 97 (334)
..++|+|||+|+.|+.+|..|.+.+ ...|+|++..+.. ...+.+.+++.||+++.+..+..
T Consensus 316 ~gk~VvViG~G~~g~e~A~~L~~~G-~~vV~vv~~~~~~------------------~~~l~~~L~~~GV~i~~~~~v~~ 376 (985)
T TIGR01372 316 PGKRIVVATNNDSAYRAAADLLAAG-IAVVAIIDARADV------------------SPEARAEARELGIEVLTGHVVAA 376 (985)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-CceEEEEccCcch------------------hHHHHHHHHHcCCEEEcCCeEEE
Confidence 3579999999999999999999986 2357888876432 11233456777999988865421
Q ss_pred --------EEecc----c-ceeccCeEEEeccCCCCCC
Q 019876 98 --------SVSLS----E-LRQLYHVVVLAYGAESDRA 122 (334)
Q Consensus 98 --------~v~~~----~-~~~~yd~lIlATGs~~p~~ 122 (334)
.+.+. + ..+++|.|+++.|. .|..
T Consensus 377 i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~-~Pnt 413 (985)
T TIGR01372 377 TEGGKRVSGVAVARNGGAGQRLEADALAVSGGW-TPVV 413 (985)
T ss_pred EecCCcEEEEEEEecCCceEEEECCEEEEcCCc-Cchh
Confidence 12222 1 23579999999998 4543
No 373
>PRK06847 hypothetical protein; Provisional
Probab=95.99 E-value=0.051 Score=51.43 Aligned_cols=36 Identities=31% Similarity=0.314 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~ 214 (334)
+.++|+|||||..|+-+|..|++ .|. +|+|++++..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~--------------------~g~-~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRR--------------------AGI-AVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEecCCC
Confidence 35789999999999999999986 676 5999998864
No 374
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=95.88 E-value=0.082 Score=50.69 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=30.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhhc---CCCCeEEEEcCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRL 53 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~---~~~~~v~vie~~ 53 (334)
...+++||||||+|+.+|..+... .+...|.++|..
T Consensus 17 ~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g 55 (486)
T COG2509 17 AALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVG 55 (486)
T ss_pred hccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEec
Confidence 467999999999999999998753 346899999875
No 375
>PRK02106 choline dehydrogenase; Validated
Probab=95.87 E-value=0.012 Score=59.23 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=31.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
...++||||+|++|+.+|..|.+. ++.+|+|+|+.+
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCCC
Confidence 347999999999999999999993 359999999884
No 376
>PRK06126 hypothetical protein; Provisional
Probab=95.80 E-value=0.08 Score=53.02 Aligned_cols=35 Identities=31% Similarity=0.417 Sum_probs=30.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (334)
Q Consensus 159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~ 214 (334)
..+|+|||||.+|+-+|..|++ .|. +|+|++|++.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~--------------------~G~-~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGR--------------------RGV-DSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCC
Confidence 3679999999999999999997 687 4999998864
No 377
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.77 E-value=0.052 Score=53.42 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=37.0
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc
Q 019876 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV 64 (334)
Q Consensus 16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~ 64 (334)
.....+++|||||.+|-..+..+++...-..|..+|.++..-|.--.|+
T Consensus 113 ~~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv 161 (588)
T COG1086 113 KDNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGV 161 (588)
T ss_pred ccCCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcCCEEece
Confidence 3456899999999999999999998765456777888877655444443
No 378
>PLN02661 Putative thiazole synthesis
Probab=95.77 E-value=0.046 Score=51.32 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=67.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc----------CC-CHHHHHHH
Q 019876 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA----------AC-TAKELREI 227 (334)
Q Consensus 159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~----------~~-~~~~~~~~ 227 (334)
.-.|+|||+|..|+-+|..|++ .+..+|+++++...+.. .+ ......++
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~--------------------~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~ 151 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSK--------------------NPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLF 151 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHH--------------------cCCCeEEEEecCcccccceeeCcccccccccccHHHHH
Confidence 4589999999999999999985 32236999998754311 11 11234456
Q ss_pred HcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEE
Q 019876 228 LGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGV 307 (334)
Q Consensus 228 l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v 307 (334)
|++.|+.+.-. ..+..... .....+.|.+.+. ...||+++.++.+.+++ - +++++.||
T Consensus 152 LeElGV~fd~~-dgy~vv~h----------a~e~~stLi~ka~--------~~~gVkI~~~t~V~DLI--~-~~grVaGV 209 (357)
T PLN02661 152 LDELGVPYDEQ-ENYVVIKH----------AALFTSTIMSKLL--------ARPNVKLFNAVAAEDLI--V-KGDRVGGV 209 (357)
T ss_pred HHHcCCCcccC-CCeeEecc----------hHHHHHHHHHHHH--------hcCCCEEEeCeEeeeEE--e-cCCEEEEE
Confidence 67777765221 11100000 0111122333322 25689999999999998 4 36889999
Q ss_pred EEEE
Q 019876 308 HFEK 311 (334)
Q Consensus 308 ~~~~ 311 (334)
.+.+
T Consensus 210 Vvnw 213 (357)
T PLN02661 210 VTNW 213 (357)
T ss_pred Eeec
Confidence 8754
No 379
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.75 E-value=0.08 Score=50.29 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=27.9
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~ 213 (334)
+|+|||||.+|+-+|..|++ .|. +|+|+++.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~--------------------~G~-~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQ--------------------KGI-KTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHc--------------------CCC-eEEEecCCC
Confidence 59999999999999999996 676 599999763
No 380
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.75 E-value=0.011 Score=62.84 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=31.8
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..+|+|||+|.||+.||..+.+.+ .+|+|+++.+.
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G--~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHG--ANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCC--CeEEEEecccc
Confidence 468999999999999999999886 99999999764
No 381
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.73 E-value=0.051 Score=52.24 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=16.8
Q ss_pred EEEcCCHHHHHHHHHHcc
Q 019876 163 VILGQGNVALDVARILLR 180 (334)
Q Consensus 163 vVIG~G~~g~e~A~~L~~ 180 (334)
+|||||.+|+-+|..+++
T Consensus 1 vIIGgG~aGl~aAi~aa~ 18 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR 18 (400)
T ss_pred CEEEEeHHHHHHHHHHHh
Confidence 599999999999999986
No 382
>PRK06185 hypothetical protein; Provisional
Probab=95.68 E-value=0.077 Score=50.84 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=29.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (334)
Q Consensus 159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~ 214 (334)
...|+|||||.+|+-+|..|++ .|. +|+|+++.+.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~--------------------~G~-~v~liE~~~~ 40 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR--------------------AGV-DVTVLEKHAD 40 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEecCCc
Confidence 3579999999999999999996 676 5999998753
No 383
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.65 E-value=0.014 Score=44.84 Aligned_cols=34 Identities=38% Similarity=0.443 Sum_probs=30.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
+.++|+|||+|..|..-+..|.+.+ .+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~g--A~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAG--AKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCT--BEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCc
Confidence 4689999999999999999999997 999999875
No 384
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.64 E-value=0.013 Score=58.29 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=29.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
-..+|+|||+|.||+.||..+. + .+|+|+|+.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~--~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--P--RPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--c--CCEEEEECCCC
Confidence 3479999999999999999986 3 69999999875
No 385
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.095 Score=48.45 Aligned_cols=87 Identities=17% Similarity=0.204 Sum_probs=58.9
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 96 (334)
...++|+|||+|-+++..|.+|.+.. .+|+++-+.+..- + .+.+.+.+. +..++.++.++.+.
T Consensus 141 ~~~k~v~ViGgG~sAve~Al~L~~~a--~~Vtlv~r~~~~r--------a----~~~~~~~l~---~~~~i~~~~~~~i~ 203 (305)
T COG0492 141 FKGKDVVVIGGGDSAVEEALYLSKIA--KKVTLVHRRDEFR--------A----EEILVERLK---KNVKIEVLTNTVVK 203 (305)
T ss_pred ccCCeEEEEcCCHHHHHHHHHHHHhc--CeEEEEecCcccC--------c----CHHHHHHHH---hcCCeEEEeCCcee
Confidence 34579999999999999999999986 7899998876421 1 122322222 22268887776542
Q ss_pred -------eEEecccc-----eeccCeEEEeccCCCCC
Q 019876 97 -------SSVSLSEL-----RQLYHVVVLAYGAESDR 121 (334)
Q Consensus 97 -------~~v~~~~~-----~~~yd~lIlATGs~~p~ 121 (334)
..+.+++. ...+|.++++.|.. |.
T Consensus 204 ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~-p~ 239 (305)
T COG0492 204 EILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHL-PN 239 (305)
T ss_pred EEecCccceEEEEecCCceEEEEeceEEEecCCC-Cc
Confidence 23333332 34799999999984 54
No 386
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.62 E-value=0.069 Score=52.43 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=32.8
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
+|+|+|||+|..|+..|..|++.+.+.+|+.+|.++.
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 4789999999999999999999866689999998754
No 387
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=95.53 E-value=0.017 Score=52.97 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=30.0
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
..+|+|||||.||++|+..|.+.| .+..||.+.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~G--k~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAG--KRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcC--CcEEEEeCC
Confidence 468999999999999999999998 888888876
No 388
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.53 E-value=0.032 Score=54.91 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=44.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~ 237 (334)
.+++|+|||+|.+|+++|..|.+ .|. +|+++++++.. ....+.+.|+..||.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~--------------------~G~-~V~~~d~~~~~----~~~~~~~~l~~~gv~~~~ 69 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE--------------------LGA-RVTVVDDGDDE----RHRALAAILEALGATVRL 69 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------CCC-EEEEEeCCchh----hhHHHHHHHHHcCCEEEE
Confidence 57899999999999999999986 676 59999876532 123445567778999987
Q ss_pred ccC
Q 019876 238 RED 240 (334)
Q Consensus 238 ~~~ 240 (334)
+..
T Consensus 70 ~~~ 72 (480)
T PRK01438 70 GPG 72 (480)
T ss_pred CCC
Confidence 653
No 389
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.50 E-value=0.063 Score=50.85 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=61.7
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCC--CCeEE-EEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVD-IIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~--~~~v~-vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 95 (334)
.++|-|||+|+.|-..|..|.+... +.+|. ||+.... .+..+++.+..+-.+.++..|+.++.+..|
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n----------m~kiLPeyls~wt~ekir~~GV~V~pna~v 416 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN----------MEKILPEYLSQWTIEKIRKGGVDVRPNAKV 416 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC----------hhhhhHHHHHHHHHHHHHhcCceeccchhh
Confidence 5899999999999888888877642 34444 4443211 122233445555566677889999888765
Q ss_pred c--------eEEecccce-eccCeEEEeccCCCCCC
Q 019876 96 G--------SSVSLSELR-QLYHVVVLAYGAESDRA 122 (334)
Q Consensus 96 ~--------~~v~~~~~~-~~yd~lIlATGs~~p~~ 122 (334)
. ..+.+.++. ...|.||+|+|. .|+.
T Consensus 417 ~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~-ePN~ 451 (659)
T KOG1346|consen 417 ESVRKCCKNLVLKLSDGSELRTDLVVVAVGE-EPNS 451 (659)
T ss_pred hhhhhhccceEEEecCCCeeeeeeEEEEecC-CCch
Confidence 2 124555554 489999999999 4654
No 390
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=95.49 E-value=0.036 Score=52.90 Aligned_cols=34 Identities=35% Similarity=0.398 Sum_probs=29.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (334)
Q Consensus 159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~ 213 (334)
..+|+|||||.+|+-+|..|++ .|. +|+|+++.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~--------------------~G~-~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD--------------------AGL-SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc--------------------CCC-EEEEEeCCC
Confidence 3579999999999999999996 676 599999975
No 391
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.49 E-value=0.018 Score=55.37 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=30.5
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
++|+|||||.+|+++|..|++ .|. +|+|+++++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr--------------------~Gl-~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK--------------------RGV-PVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEEccCcc
Confidence 589999999999999999996 676 59999987654
No 392
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=95.48 E-value=0.021 Score=55.42 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=36.8
Q ss_pred CCeEEEECCchHHHHHHHHHhhcC--CCCeEEEEcCCCCCcccc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLV 60 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~--~~~~v~vie~~~~~gg~~ 60 (334)
.++.=|||+|.|+|+||.+|.+.+ |+-+|+|+|+.+.+||.+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 357889999999999999999876 788999999998877654
No 393
>PRK08244 hypothetical protein; Provisional
Probab=95.48 E-value=0.13 Score=50.84 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=30.0
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
-.|+|||||.+|+-+|..|++ .|. +|+|+++++..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~--------------------~G~-~v~viEr~~~~ 37 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL--------------------AGV-KTCVIERLKET 37 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEecCCCC
Confidence 369999999999999999996 677 59999998643
No 394
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=95.47 E-value=0.018 Score=55.65 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=30.8
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~ 217 (334)
+|+|||||.+|+++|..|++ .|. +|+|+++++....
T Consensus 2 ~VvVIGgGlAGleaA~~LAr--------------------~G~-~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQ--------------------AGV-PVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEeccccccC
Confidence 69999999999999999996 676 5999998776433
No 395
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.43 E-value=0.088 Score=51.02 Aligned_cols=161 Identities=20% Similarity=0.198 Sum_probs=88.6
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceE
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 98 (334)
.++|+|+|-|-.|+++|..|.+.| ++|+++|.++.+ +. ... ..+...++++..+..-.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~---------~~---~~~------~~~~~~~i~~~~g~~~~-- 64 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAP---------EG---LAA------QPLLLEGIEVELGSHDD-- 64 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCc---------cc---hhh------hhhhccCceeecCccch--
Confidence 689999999999999999999998 999999977542 10 000 11123356654443211
Q ss_pred EecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcC-CHHH--HHHH
Q 019876 99 VSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ-GNVA--LDVA 175 (334)
Q Consensus 99 v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~-G~~g--~e~A 175 (334)
.....+|.||+..|. .+..|-+.-....|+--..+..-++... ...+-|+|=|. |-+- .=++
T Consensus 65 ----~~~~~~d~vV~SPGi-~~~~p~v~~A~~~gi~i~~dieL~~r~~----------~~~p~vaITGTNGKTTTTsli~ 129 (448)
T COG0771 65 ----EDLAEFDLVVKSPGI-PPTHPLVEAAKAAGIEIIGDIELFYRLS----------GEAPIVAITGTNGKTTTTSLIA 129 (448)
T ss_pred ----hccccCCEEEECCCC-CCCCHHHHHHHHcCCcEEeHHHHHHHhc----------CCCCEEEEECCCchHHHHHHHH
Confidence 122368999999997 3444322111122222111222111111 02344555552 3221 1223
Q ss_pred HHHccCC-cccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876 176 RILLRPT-EELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (334)
Q Consensus 176 ~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~ 216 (334)
..|.... +-.-+-+|...+++.+......++.+++-++.-+
T Consensus 130 ~~l~~~G~~~~lgGNIG~p~l~~~~~~~~~d~~VlElSSfQL 171 (448)
T COG0771 130 HLLKAAGLDALLGGNIGTPALELLEQAEPADVYVLELSSFQL 171 (448)
T ss_pred HHHHhcCCCceeccccCccHHHhhcccCCCCEEEEEcccccc
Confidence 3333322 2245667777778877654445699999887543
No 396
>PRK07190 hypothetical protein; Provisional
Probab=95.38 E-value=0.14 Score=50.65 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=29.5
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~ 214 (334)
-.|+|||+|.+|+-+|..|++ .|. +|.|+++.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar--------------------~Gi-~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQL--------------------CGL-NTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHH--------------------cCC-CEEEEeCCCc
Confidence 479999999999999999986 677 4999998864
No 397
>PRK10015 oxidoreductase; Provisional
Probab=95.37 E-value=0.11 Score=50.46 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=30.1
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
-.|+|||||..|+-+|..|++ .|. +|.+++|....
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~--------------------~G~-~VlliEr~~~~ 40 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR--------------------AGL-DVLVIERGDSA 40 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh--------------------CCC-eEEEEecCCCC
Confidence 369999999999999999996 676 59999988654
No 398
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.37 E-value=0.031 Score=57.14 Aligned_cols=62 Identities=21% Similarity=0.395 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc-------cC--CCHH---HHH
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ-------AA--CTAK---ELR 225 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~-------~~--~~~~---~~~ 225 (334)
.+++|+|||+|..|+.+|..|++ .|. +|+++++.+.+. .+ +... ...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--------------------~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~ 367 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--------------------AGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRR 367 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--------------------cCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHH
Confidence 58999999999999999999996 676 599999887531 11 2221 233
Q ss_pred HHHcCCceEEEEccC
Q 019876 226 EILGIKNLYVHIRED 240 (334)
Q Consensus 226 ~~l~~~gv~~~~~~~ 240 (334)
+.+...||+++++..
T Consensus 368 ~~~~~~Gv~~~~~~~ 382 (639)
T PRK12809 368 EIFTAMGIDFHLNCE 382 (639)
T ss_pred HHHHHCCeEEEcCCc
Confidence 566788999988764
No 399
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.37 E-value=0.029 Score=55.41 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=44.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc-------cC--CCHH---HHH
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ-------AA--CTAK---ELR 225 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~-------~~--~~~~---~~~ 225 (334)
.+++|+|||+|..|+.+|..|++ .|. +|+|+++.+.+. +. .... ...
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~--------------------~g~-~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~ 200 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR--------------------AGH-TVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRI 200 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--------------------cCC-eEEEEecCCCCCceeeccCCCccCCHHHHHHHH
Confidence 56899999999999999999996 565 599999876431 11 1222 223
Q ss_pred HHHcCCceEEEEccC
Q 019876 226 EILGIKNLYVHIRED 240 (334)
Q Consensus 226 ~~l~~~gv~~~~~~~ 240 (334)
+.++..||+++++..
T Consensus 201 ~~~~~~Gv~~~~~~~ 215 (485)
T TIGR01317 201 DLLSAEGIDFVTNTE 215 (485)
T ss_pred HHHHhCCCEEECCCE
Confidence 455678999987654
No 400
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.33 E-value=0.025 Score=46.90 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=29.7
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
||+|||||..|.++|..|..++ .+|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g--~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG--HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT--EEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcC--CEEEEEeccH
Confidence 6999999999999999999997 9999998863
No 401
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.32 E-value=0.021 Score=56.38 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
+.++|+|||+|.+|+-+|+.|.. .|.+ |+|++.|+++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~--------------------~G~~-V~VLEARdRv 50 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQD--------------------FGFD-VLVLEARDRV 50 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHH--------------------cCCc-eEEEeccCCc
Confidence 45799999999999999999996 6774 9999888654
No 402
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.32 E-value=0.063 Score=53.55 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=29.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
..++|+|||+|.+|.-.|..|.+.. .+|++.-|+.
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a--~~v~~s~R~~ 216 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVA--KKVYLSTRRG 216 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTS--CCEEEECC--
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhc--CCeEEEEecc
Confidence 5789999999999999999998875 7888877763
No 403
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.29 E-value=0.11 Score=49.91 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=28.5
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~ 212 (334)
.+|+|||||.+|+-+|..|++ .|. +|+|+++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~--------------------~G~-~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKE--------------------SDL-RIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHh--------------------CCC-EEEEEcCC
Confidence 579999999999999999986 676 59999986
No 404
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.29 E-value=0.024 Score=39.94 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=26.4
Q ss_pred EEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 164 ILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 164 VIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
|||+|.+|+-+|..|++ .+. +|+|+++++.+
T Consensus 1 IiGaG~sGl~aA~~L~~--------------------~g~-~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK--------------------AGY-RVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHH--------------------TTS-EEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHH--------------------CCC-cEEEEecCccc
Confidence 89999999999999996 565 79999999765
No 405
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.26 E-value=0.031 Score=42.83 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~ 213 (334)
++++|+|||||.+|..-+..|.+ .|+ +|+++....
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~--------------------~gA-~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE--------------------AGA-KVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC--------------------CTB-EEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--------------------CCC-EEEEECCch
Confidence 68999999999999999999996 676 699998764
No 406
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=95.22 E-value=0.062 Score=54.10 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=27.8
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~ 212 (334)
.|+|||||..|+++|..+++ .|. +|.++++.
T Consensus 6 DVIVVGGGpAG~eAA~~aAR--------------------~G~-kV~LiE~~ 36 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAAR--------------------MGA-KTLLLTHN 36 (618)
T ss_pred eEEEECchHHHHHHHHHHHH--------------------cCC-cEEEEecc
Confidence 69999999999999999996 676 49999887
No 407
>PRK06834 hypothetical protein; Provisional
Probab=95.20 E-value=0.16 Score=50.14 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=29.9
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~ 214 (334)
..|+|||+|.+|+-+|..|++ .|. +|+|+++.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~--------------------~G~-~v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELAL--------------------AGV-DVAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEecCCC
Confidence 579999999999999999996 677 5999998864
No 408
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.12 E-value=0.023 Score=56.82 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=29.6
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
++||||+|.||..+|..|.+.+ ..+|.|+|+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~-~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDV-SNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCC-CCeEEEEecCC
Confidence 5899999999999999999874 57999999875
No 409
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.11 E-value=0.041 Score=45.70 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=30.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
..++|+|||||..|..-+..|.+.+ .+|+||+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~g--a~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTG--AFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCc
Confidence 5689999999999999999999987 999999643
No 410
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.11 E-value=0.092 Score=51.78 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc--c-----C-CCH-----HHH
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ--A-----A-CTA-----KEL 224 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~--~-----~-~~~-----~~~ 224 (334)
.+++|+|||+|..|+.+|..|++. ..|. +|+|+++.+.+. . + +.. ..+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~------------------~~g~-~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~ 85 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKA------------------HDGA-RVDIIERLPTPFGLVRSGVAPDHPETKNVTNQF 85 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhh------------------CCCC-eEEEEecCCCCcceEeeccCCCcchhHHHHHHH
Confidence 578999999999999999999730 1354 699999986431 1 1 111 234
Q ss_pred HHHHcCCceEEEEc
Q 019876 225 REILGIKNLYVHIR 238 (334)
Q Consensus 225 ~~~l~~~gv~~~~~ 238 (334)
.+.+...+|+++.+
T Consensus 86 ~~~~~~~~v~~~~n 99 (491)
T PLN02852 86 SRVATDDRVSFFGN 99 (491)
T ss_pred HHHHHHCCeEEEcC
Confidence 45566678886653
No 411
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=95.05 E-value=0.022 Score=52.04 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=35.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
..+++||||||..|++.|..|.-+.|..+|.|+|++...
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 468999999999999999999988888999999998653
No 412
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.05 E-value=0.014 Score=52.63 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=34.1
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcC----CCCeEEEEcCCCCCc
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPF 57 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~----~~~~v~vie~~~~~g 57 (334)
.+.++|+|||||..|..+|.+|.+.. ....|+|||.....|
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ 52 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG 52 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence 45689999999999999999999875 147999999875543
No 413
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=94.98 E-value=0.15 Score=49.49 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=30.1
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
-.|+|||||..|+-+|..|++ .|. +|.|++|....
T Consensus 6 ~DViIVGaGpAG~~aA~~La~--------------------~G~-~V~llEr~~~~ 40 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR--------------------EGA-QVLVIERGNSA 40 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh--------------------CCC-eEEEEEcCCCC
Confidence 479999999999999999996 676 59999998643
No 414
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.024 Score=52.21 Aligned_cols=91 Identities=18% Similarity=0.156 Sum_probs=63.6
Q ss_pred cCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCe
Q 019876 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (334)
Q Consensus 14 ~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~ 93 (334)
+.+..+-+-+|||||+.++.||-.|...+ ++++|.-|.-.+ .+| ..+..+...+.++..|+.|....
T Consensus 193 sl~~~PGkTLvVGa~YVaLECAgFL~gfg--~~vtVmVRSI~L---------rGF--Dqdmae~v~~~m~~~Gikf~~~~ 259 (503)
T KOG4716|consen 193 SLPYEPGKTLVVGAGYVALECAGFLKGFG--YDVTVMVRSILL---------RGF--DQDMAELVAEHMEERGIKFLRKT 259 (503)
T ss_pred cccCCCCceEEEccceeeeehhhhHhhcC--CCcEEEEEEeec---------ccc--cHHHHHHHHHHHHHhCCceeecc
Confidence 34445668889999999999999999987 888887665321 232 45677778888888999987553
Q ss_pred EEc-------eE--E------ecccceeccCeEEEeccC
Q 019876 94 TLG-------SS--V------SLSELRQLYHVVVLAYGA 117 (334)
Q Consensus 94 ~v~-------~~--v------~~~~~~~~yd~lIlATGs 117 (334)
... .. | +.+.++..||.|++|.|-
T Consensus 260 vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR 298 (503)
T KOG4716|consen 260 VPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGR 298 (503)
T ss_pred cceeeeeccCCcEEEEeecccccccccchhhhhhhhhcc
Confidence 211 01 1 112233579999999997
No 415
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=94.97 E-value=0.11 Score=48.74 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=69.8
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC----c----cccCCCHHHHHH-----
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG----P----VQAACTAKELRE----- 226 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~----~----~~~~~~~~~~~~----- 226 (334)
-.|+|||+|-.|.-+|..|++ .| ++|++|+|.- + ++.+-.-..+.+
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~k--------------------dG-RrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~D 104 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAK--------------------DG-RRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLED 104 (509)
T ss_pred ccEEEECCcchHHHHHHHHhh--------------------CC-cEEEEEecccccchHHHHHhcCcchhHHHHHhCHHH
Confidence 459999999999999999997 45 5799999972 1 122222212211
Q ss_pred ---HHc---CCceEEEEccCccCCC-C---CchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeec
Q 019876 227 ---ILG---IKNLYVHIREDDLIKS-P---TDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE 296 (334)
Q Consensus 227 ---~l~---~~gv~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~ 296 (334)
-+. ..|..++-+.++.+.. | ...++.+-+-+.-|+.+-|++.+. ...+|++..++ +.++.
T Consensus 105 cve~IDAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~--------slpNV~~eeGt-V~sLl- 174 (509)
T KOG1298|consen 105 CVEGIDAQRVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAA--------SLPNVRLEEGT-VKSLL- 174 (509)
T ss_pred HhhcccceEeeeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHh--------cCCCeEEeeee-HHHHH-
Confidence 111 1244455444333210 1 001111223344556666666654 57889998666 56666
Q ss_pred cccCCCCeeEEEEEE
Q 019876 297 SNERSGHVSGVHFEK 311 (334)
Q Consensus 297 ~~~~~~~v~~v~~~~ 311 (334)
. ++|-|+||+.++
T Consensus 175 -e-e~gvvkGV~yk~ 187 (509)
T KOG1298|consen 175 -E-EEGVVKGVTYKN 187 (509)
T ss_pred -h-ccCeEEeEEEec
Confidence 3 478999999876
No 416
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.96 E-value=0.046 Score=44.10 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~ 213 (334)
.+++++|||+|-+|-.++..|.. .|+++|+++.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~--------------------~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA--------------------LGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH--------------------TTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHH--------------------cCCCEEEEEECCH
Confidence 68999999999999999999996 7999999999873
No 417
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.95 E-value=0.17 Score=48.40 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=28.5
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCC-cceEEEEeecCc
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS-IRKVYLVGRRGP 214 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~Vtiv~r~~~ 214 (334)
.|+|||||.+|+-+|..|++ .| .-+|+|+++++.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~--------------------~g~g~~v~liE~~~~ 37 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ--------------------AAPHLPVTVVDAAPA 37 (403)
T ss_pred CEEEECccHHHHHHHHHHhc--------------------CCCCCEEEEEeCCCc
Confidence 58999999999999999996 44 236999999864
No 418
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=94.93 E-value=0.28 Score=48.06 Aligned_cols=28 Identities=7% Similarity=0.065 Sum_probs=23.4
Q ss_pred ceEEEEEeccccceeeccccCCCCeeEEEEE
Q 019876 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFE 310 (334)
Q Consensus 280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~ 310 (334)
+.|+++++++.+++|. . ++++|.+|.+.
T Consensus 143 ~~gv~i~~~t~v~~l~--~-~~g~v~gv~~~ 170 (466)
T PRK08274 143 RLGVEIRYDAPVTALE--L-DDGRFVGARAG 170 (466)
T ss_pred HCCCEEEcCCEEEEEE--e-cCCeEEEEEEE
Confidence 5689999999999998 4 36789988874
No 419
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.90 E-value=0.1 Score=45.41 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=37.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~ 237 (334)
.+++|+|||||.+|..-+..|.+ .|+ +|+++.... .+++.++.+..+|.++-
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~--------------------~ga-~VtVvsp~~-------~~~l~~l~~~~~i~~~~ 59 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK--------------------AGA-QLRVIAEEL-------ESELTLLAEQGGITWLA 59 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH--------------------CCC-EEEEEcCCC-------CHHHHHHHHcCCEEEEe
Confidence 67999999999999999999986 676 599986532 14555554444565544
No 420
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.88 E-value=0.074 Score=56.68 Aligned_cols=60 Identities=15% Similarity=0.273 Sum_probs=42.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc-------cCC--CHHHH---H
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ-------AAC--TAKEL---R 225 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~-------~~~--~~~~~---~ 225 (334)
.+++|+|||||..|+.+|..|++ .|. +|+|+++++.+. +.+ ....+ .
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr--------------------~G~-~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~i 594 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR--------------------AGH-PVTVFEKKEKPGGVVKNIIPEFRISAESIQKDI 594 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecccccCceeeecccccCCCHHHHHHHH
Confidence 56899999999999999999996 675 699999875321 111 12222 2
Q ss_pred HHHcCCceEEEEc
Q 019876 226 EILGIKNLYVHIR 238 (334)
Q Consensus 226 ~~l~~~gv~~~~~ 238 (334)
+.+...||+++++
T Consensus 595 e~l~~~GVe~~~g 607 (1012)
T TIGR03315 595 ELVKFHGVEFKYG 607 (1012)
T ss_pred HHHHhcCcEEEEe
Confidence 3455679999887
No 421
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=94.87 E-value=0.3 Score=48.49 Aligned_cols=29 Identities=17% Similarity=0.373 Sum_probs=24.0
Q ss_pred ceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (334)
Q Consensus 280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~ 311 (334)
+.||++++++.+++|. . ++++|.+|.+..
T Consensus 202 ~~gv~i~~~t~v~~l~--~-~~g~V~Gv~~~~ 230 (506)
T PRK06481 202 ERKIPLFVNADVTKIT--E-KDGKVTGVKVKI 230 (506)
T ss_pred HcCCeEEeCCeeEEEE--e-cCCEEEEEEEEe
Confidence 5689999999999998 4 367899988753
No 422
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=94.85 E-value=0.067 Score=57.42 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=44.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc-------cCC--CH---HHHH
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ-------AAC--TA---KELR 225 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~-------~~~--~~---~~~~ 225 (334)
.+++|+|||||..|+.+|..|++ .|. +|+|+++.+.+. +.+ .. ....
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~--------------------~G~-~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~ 487 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK--------------------YGV-DVTVYEALHVVGGVLQYGIPSFRLPRDIIDREV 487 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEecCCCCcceeeccCCccCCCHHHHHHHH
Confidence 57899999999999999999996 675 699999875431 111 11 1233
Q ss_pred HHHcCCceEEEEcc
Q 019876 226 EILGIKNLYVHIRE 239 (334)
Q Consensus 226 ~~l~~~gv~~~~~~ 239 (334)
+.+...||+++++.
T Consensus 488 ~~l~~~Gv~~~~~~ 501 (1006)
T PRK12775 488 QRLVDIGVKIETNK 501 (1006)
T ss_pred HHHHHCCCEEEeCC
Confidence 45667899999885
No 423
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=94.79 E-value=0.025 Score=54.94 Aligned_cols=30 Identities=33% Similarity=0.532 Sum_probs=28.0
Q ss_pred EECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 24 VVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 24 IIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
|||+|.||++||..+++.+ .+|+|+||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~G--a~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAG--ASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCC--CcEEEEeCCCC
Confidence 7999999999999999997 99999999874
No 424
>PLN02463 lycopene beta cyclase
Probab=94.78 E-value=0.19 Score=49.02 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=29.1
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~ 214 (334)
-.|+|||||..|+-+|..|++ .|. +|.+++++..
T Consensus 29 ~DVvIVGaGpAGLalA~~La~--------------------~Gl-~V~liE~~~~ 62 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE--------------------AGL-SVCCIDPSPL 62 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEeccCcc
Confidence 379999999999999999986 576 5999998753
No 425
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.77 E-value=0.13 Score=54.42 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=34.5
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 155 DLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 155 ~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
....+++|+|||+|..|+-+|..|.+ .| ..|++.+|+++.
T Consensus 1781 ~~rtg~~vaiigsgpaglaaadqlnk--------------------~g-h~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNK--------------------AG-HTVTVYERSDRV 1820 (2142)
T ss_pred ccccCcEEEEEccCchhhhHHHHHhh--------------------cC-cEEEEEEecCCc
Confidence 35589999999999999999999996 45 479999999865
No 426
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=94.65 E-value=0.12 Score=49.24 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=30.3
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
-.|+|||||..|+-+|..|++ .|. +|+|+++....
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~~ 40 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ--------------------SGL-RVALLAPRAPP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh--------------------CCC-eEEEEecCCCc
Confidence 479999999999999999996 676 69999988654
No 427
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.61 E-value=0.11 Score=50.84 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=49.7
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceE
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 98 (334)
.++|.|+|.|.+|+++|..|++.| ++|+++|..+.. .. ... . ..++..|+.+..+...
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~----------~~---~~~---~-~~l~~~gi~~~~~~~~--- 71 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEE----------EL---GEV---S-NELKELGVKLVLGENY--- 71 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCc----------cc---hHH---H-HHHHhCCCEEEeCCCC---
Confidence 468999999999999999999997 999999976421 10 011 1 1234567776544210
Q ss_pred EecccceeccCeEEEeccC
Q 019876 99 VSLSELRQLYHVVVLAYGA 117 (334)
Q Consensus 99 v~~~~~~~~yd~lIlATGs 117 (334)
. +.-..+|.||++.|.
T Consensus 72 --~-~~~~~~dlVV~Spgi 87 (458)
T PRK01710 72 --L-DKLDGFDVIFKTPSM 87 (458)
T ss_pred --h-HHhccCCEEEECCCC
Confidence 0 111358999998887
No 428
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.60 E-value=0.063 Score=46.55 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=30.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
..++|+|||||..|...|..|.+.+ .+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG--AHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcCC
Confidence 4679999999999999999999987 899999864
No 429
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=94.57 E-value=0.048 Score=49.44 Aligned_cols=38 Identities=32% Similarity=0.364 Sum_probs=32.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhh-----cCCCCeEEEEcCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLK-----AHQEAQVDIIDRLPT 55 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~-----~~~~~~v~vie~~~~ 55 (334)
++++|+|||+|..|++.|..+.+ .-|.++|++++....
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 46899999999999999988877 337799999987644
No 430
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.55 E-value=0.05 Score=42.29 Aligned_cols=71 Identities=21% Similarity=0.214 Sum_probs=45.5
Q ss_pred EEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceEEec
Q 019876 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSL 101 (334)
Q Consensus 22 vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~v~~ 101 (334)
|+|+|.|..|...+..|.+.+ .+|+++|+++. . .+.+...++.++.+...... .+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~------------------~----~~~~~~~~~~~i~gd~~~~~-~l 55 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPE------------------R----VEELREEGVEVIYGDATDPE-VL 55 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHH------------------H----HHHHHHTTSEEEES-TTSHH-HH
T ss_pred eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcH------------------H----HHHHHhcccccccccchhhh-HH
Confidence 689999999999999999964 79999998631 1 12223445666554332211 11
Q ss_pred ccc-eeccCeEEEeccC
Q 019876 102 SEL-RQLYHVVVLAYGA 117 (334)
Q Consensus 102 ~~~-~~~yd~lIlATGs 117 (334)
... -.+++.+|++|+.
T Consensus 56 ~~a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 56 ERAGIEKADAVVILTDD 72 (116)
T ss_dssp HHTTGGCESEEEEESSS
T ss_pred hhcCccccCEEEEccCC
Confidence 111 2378999999885
No 431
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.46 E-value=0.06 Score=51.95 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=35.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~ 56 (334)
+..+||+||||..|.+.+..|.+..|..+|.|+|+.+.+
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~ 40 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSV 40 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcc
Confidence 457999999999999999999999999999999998654
No 432
>PRK06996 hypothetical protein; Provisional
Probab=94.44 E-value=0.29 Score=46.92 Aligned_cols=37 Identities=32% Similarity=0.431 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCc---ceEEEEeecCc
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI---RKVYLVGRRGP 214 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~~Vtiv~r~~~ 214 (334)
....|+|||||.+|+-+|..|++ .|. .+|+++++.+.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~--------------------~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLAR--------------------RSATRALSIALIDAREP 49 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc--------------------CCCcCCceEEEecCCCC
Confidence 34589999999999999999996 442 35999998753
No 433
>PLN02785 Protein HOTHEAD
Probab=94.30 E-value=0.059 Score=54.43 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=30.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
..++++|||+|.||+.+|..|.+ . .+|.|+|+.+
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~--~~VLllE~G~ 87 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-N--FSVLLLERGG 87 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-C--CcEEEEecCC
Confidence 35899999999999999999999 3 8999999875
No 434
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.19 E-value=0.083 Score=44.31 Aligned_cols=35 Identities=34% Similarity=0.415 Sum_probs=29.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
.+.+|+|+|+|.+|..|+..+...+ ++++++|..+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCH
Confidence 4689999999999999999999997 9999999763
No 435
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=94.12 E-value=0.066 Score=53.60 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=31.7
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
....++||||+|.+|..+|..|... +.+|.|+|...
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~--g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDA--GLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCC--CCeEEEEeCCC
Confidence 3568999999999999999999955 59999999874
No 436
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.09 E-value=0.06 Score=49.92 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=28.6
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~ 216 (334)
.|+|||||..|+-+|..|++ .|. +|+|++|++...
T Consensus 3 dV~IvGaG~aGl~~A~~L~~--------------------~G~-~v~i~E~~~~~~ 37 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALAR--------------------AGI-DVTIIERRPDPR 37 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHH--------------------TTC-EEEEEESSSSCC
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------ccc-ccccchhccccc
Confidence 69999999999999999997 676 599999986543
No 437
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.08 E-value=0.12 Score=52.08 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=44.7
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc-------c--CCC----HH
Q 019876 156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ-------A--ACT----AK 222 (334)
Q Consensus 156 ~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~-------~--~~~----~~ 222 (334)
...+++|+|||+|.+|+-+|..|++ .|. +|+++++.+.+. + .+. ..
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~--------------------~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~ 192 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR--------------------MGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDA 192 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHH
Confidence 3478999999999999999999986 677 599998765331 0 111 12
Q ss_pred HHHHHHcCCceEEEEccCc
Q 019876 223 ELREILGIKNLYVHIREDD 241 (334)
Q Consensus 223 ~~~~~l~~~gv~~~~~~~~ 241 (334)
++ +.+...|++++++...
T Consensus 193 ~l-~~~~~~Gv~~~~~~~~ 210 (564)
T PRK12771 193 EI-QRILDLGVEVRLGVRV 210 (564)
T ss_pred HH-HHHHHCCCEEEeCCEE
Confidence 22 3345678988887543
No 438
>PTZ00188 adrenodoxin reductase; Provisional
Probab=94.07 E-value=0.075 Score=52.12 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~ 214 (334)
..++|+|||+|+.|+.+|..|+. ..+. +|+|+++.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~-------------------~~g~-~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLK-------------------HERV-KVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-------------------hcCC-eEEEEecCCC
Confidence 57899999999999999997763 2455 5999999864
No 439
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.02 E-value=0.11 Score=41.97 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=30.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCe-EEEEcCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRL 53 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~-v~vie~~ 53 (334)
..++++|||+|-+|-.++.+|...+ .+ |+|+.|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g--~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALG--AKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTT--SSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC--CCEEEEEECC
Confidence 4689999999999999999999997 54 9999875
No 440
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=93.96 E-value=0.069 Score=51.79 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.6
Q ss_pred CeEEEEcCCHHHHHHHHHHcc
Q 019876 160 DTAVILGQGNVALDVARILLR 180 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~ 180 (334)
++|+|||||.+|+-+|..|++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~ 21 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHK 21 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHH
Confidence 479999999999999999996
No 441
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.86 E-value=0.097 Score=44.48 Aligned_cols=33 Identities=33% Similarity=0.466 Sum_probs=28.1
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
+|.|||+|..|...|..++..| ++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG--YEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT--SEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCC--CcEEEEECChH
Confidence 6899999999999999999997 99999998753
No 442
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=93.85 E-value=0.24 Score=47.52 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=30.6
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~ 216 (334)
-.|+|||+|..|.-+|..|++ .|. +|.+++++...-
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~--------------------~G~-~VlvlEk~~~~G 39 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAK--------------------AGL-DVLVLEKGSEPG 39 (396)
T ss_pred eeEEEECCchHHHHHHHHHHH--------------------cCC-eEEEEecCCCCC
Confidence 369999999999999999997 675 699999986543
No 443
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.80 E-value=0.13 Score=41.87 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=31.1
Q ss_pred CeEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 20 ~~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
+||+|||+ |..|.+.|..|...+-..++.|+|..+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 58999999 999999999999887557899999864
No 444
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.80 E-value=0.098 Score=43.44 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHcc
Q 019876 158 STDTAVILGQGNVALDVARILLR 180 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~ 180 (334)
.+++|+|||||.+|..-+..|.+
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~ 34 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKD 34 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh
Confidence 68999999999999999999986
No 445
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.78 E-value=0.22 Score=46.08 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=29.1
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
|+|.|+|+|..|...|..|.+.+ ..|+++-+.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g--~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG--HDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--CeEEEEecHH
Confidence 68999999999999999999997 7888887653
No 446
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.75 E-value=0.097 Score=51.00 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=30.6
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
|+|+|+|+|..|...|..|.+.+ .+++++++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g--~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN--NDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CcEEEEECCHH
Confidence 58999999999999999999986 89999998643
No 447
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.74 E-value=0.071 Score=49.11 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=32.1
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
.+.|-|||||.||-.||..+++.| ..|.++|.++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~G--v~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRG--VPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcC--CcEEEEEcccc
Confidence 457999999999999999999998 99999998865
No 448
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=93.74 E-value=0.081 Score=50.82 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=29.1
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~ 213 (334)
++|+|||+|.+|+-+|..|++ .|. +|+|++|..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~--------------------~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ--------------------RGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeCCC
Confidence 489999999999999999996 564 699999875
No 449
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.70 E-value=0.16 Score=49.50 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
..++|+|||+|.+|+-.|+.|.+ .|. +|++++|.+.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~--------------------~g~-~v~vfEr~~~i 41 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLR--------------------EGH-EVVVFERTDDI 41 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHH--------------------CCC-CceEEEecCCc
Confidence 46899999999999999999996 565 59999999654
No 450
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=93.68 E-value=0.095 Score=52.34 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=33.7
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
...++.+|||||.||...|..|.+. |+++|.|+|+...
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~ 92 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGD 92 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCC
Confidence 4579999999999999999999987 5899999998754
No 451
>PRK06475 salicylate hydroxylase; Provisional
Probab=93.68 E-value=0.12 Score=49.50 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=30.5
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
++|+|||||..|+-+|..|++ .|. +|+|+++.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~--------------------~G~-~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA--------------------RGW-AVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEecCCcc
Confidence 789999999999999999986 676 59999988643
No 452
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.66 E-value=0.24 Score=43.54 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=37.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~ 237 (334)
++++|+|||||.+|..=+..|.+ .|+ +||||... ..+++.++.....++++-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~--------------------~gA-~VtVVap~-------i~~el~~l~~~~~i~~~~ 75 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLK--------------------KGC-YVYILSKK-------FSKEFLDLKKYGNLKLIK 75 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--------------------CCC-EEEEEcCC-------CCHHHHHHHhCCCEEEEe
Confidence 57899999999999998888886 576 59998543 234455555555566664
No 453
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.64 E-value=0.3 Score=45.89 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=31.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
...+|+|||+|..|..+|..|.+.| -.+++|+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCc
Confidence 3578999999999999999999997 23899999864
No 454
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.62 E-value=0.12 Score=47.92 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=31.4
Q ss_pred CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
+..++|+|||+|..|...|..|.+.+ .+|+++.++
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g--~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAG--FDVHFLLRS 37 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeC
Confidence 45579999999999999999999987 999999875
No 455
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=93.61 E-value=0.26 Score=45.65 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=29.7
Q ss_pred CeEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 20 ~~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
++|+|||+ |..|..+|..|...+...+|+++|+..
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 68999998 999999999999886334699999843
No 456
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.59 E-value=0.16 Score=49.06 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=31.0
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
|+|.|||.|..|+..|..|.+.| ++|+++|+++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G--~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG--HEVTGVDIDQE 34 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC--CeEEEEECCHH
Confidence 47999999999999999999987 89999998755
No 457
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.51 E-value=0.077 Score=42.69 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=30.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (334)
Q Consensus 159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~ 212 (334)
.++|+|+|.|.+|.++|..|++ .|+.+++++...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~--------------------~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLAR--------------------SGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH--------------------HTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHH--------------------hCCCceeecCCc
Confidence 4799999999999999999996 799899999776
No 458
>PLN02268 probable polyamine oxidase
Probab=93.48 E-value=0.092 Score=50.90 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.3
Q ss_pred CeEEEEcCCHHHHHHHHHHcc
Q 019876 160 DTAVILGQGNVALDVARILLR 180 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~ 180 (334)
.+|+|||+|.+|+-+|..|.+
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~ 21 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHD 21 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHh
Confidence 379999999999999999986
No 459
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=93.45 E-value=0.098 Score=44.57 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=27.5
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~ 213 (334)
+|+|||||..|+.+|..|++ .+. +|+++++.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~--------------------~~~-~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR--------------------PGA-KVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH--------------------TTS-EEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc--------------------CCC-eEEEEeccc
Confidence 58999999999999999996 566 599997655
No 460
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=93.44 E-value=0.11 Score=49.96 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
...+|||||+|.+|+-+|..|.. +|..+|+|++.++++
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle--------------------~gf~~~~IlEa~dRI 57 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLE--------------------NGFIDVLILEASDRI 57 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHH--------------------hCCceEEEEEecccc
Confidence 45689999999999999999885 677889999888765
No 461
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.41 E-value=0.29 Score=44.35 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=31.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
...+|+|||+|..|..+|..|.+.| =.+++|+|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~G-Vg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTG-IGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCE
Confidence 3579999999999999999999997 35899999764
No 462
>PRK07233 hypothetical protein; Provisional
Probab=93.40 E-value=0.095 Score=50.45 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=28.3
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~ 214 (334)
+|+|||+|.+|+-+|..|++ .|. +|+|++++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~--------------------~G~-~v~vlE~~~~ 33 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK--------------------RGH-EVTVFEADDQ 33 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEEeCCC
Confidence 58999999999999999996 564 5999988863
No 463
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=93.30 E-value=0.1 Score=55.19 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=27.8
Q ss_pred ceEEEEEeccccceeeccccCCCCeeEEEEEEee
Q 019876 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313 (334)
Q Consensus 280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~ 313 (334)
++||.|+++..|.+|. ++++|++++|++.+..
T Consensus 652 eEGV~f~~~~~P~~i~--~d~~g~v~~l~~~~~~ 683 (1028)
T PRK06567 652 ALGVDFKENMQPLRIN--VDKYGHVESVEFENRN 683 (1028)
T ss_pred HcCcEEEecCCcEEEE--ecCCCeEEEEEEEEEe
Confidence 5899999999999998 5346899999999865
No 464
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.29 E-value=0.13 Score=49.04 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=31.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
..+|+|||||..|+-+|..|++ .|. +|+|++|++.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~--------------------~g~-~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR--------------------QGI-KVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh--------------------CCC-cEEEEeeCccc
Confidence 4689999999999999999996 676 59999998654
No 465
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=93.28 E-value=0.13 Score=48.80 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=30.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcC--CCCeEEEEcCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRL 53 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~--~~~~v~vie~~ 53 (334)
..++|+|+||||+|.+.|..|.... ...++.|+|..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 3689999999999999999998543 25899999987
No 466
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.27 E-value=0.13 Score=44.64 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEE
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV 235 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~ 235 (334)
.+++|+|||||.+|...+..|.. .|+ +|+++.+. ..+++.++.....+.+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~--------------------~ga-~V~VIs~~-------~~~~l~~l~~~~~i~~ 58 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLK--------------------YGA-HIVVISPE-------LTENLVKLVEEGKIRW 58 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEcCC-------CCHHHHHHHhCCCEEE
Confidence 68999999999999999998886 575 69999653 1234445544444544
No 467
>PRK06184 hypothetical protein; Provisional
Probab=93.23 E-value=0.16 Score=50.38 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=30.5
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
-.|+|||+|.+|+-+|..|++ .|. +|+|+++++..
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~--------------------~Gi-~v~viE~~~~~ 38 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELAR--------------------RGV-SFRLIEKAPEP 38 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCCC
Confidence 479999999999999999997 787 49999998644
No 468
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=93.21 E-value=0.63 Score=46.88 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=22.8
Q ss_pred ceEEEEEeccccceeeccccCCCCeeEEEEE
Q 019876 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFE 310 (334)
Q Consensus 280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~ 310 (334)
+.||++++++.++++. . ++|++.+|...
T Consensus 141 ~~gv~i~~~~~v~~L~--~-~~g~v~Gv~~~ 168 (566)
T TIGR01812 141 KLGVSFFNEYFALDLI--H-DDGRVRGVVAY 168 (566)
T ss_pred HcCCEEEeccEEEEEE--E-eCCEEEEEEEE
Confidence 4589999999999997 4 36889888764
No 469
>PRK05868 hypothetical protein; Validated
Probab=93.17 E-value=0.12 Score=49.22 Aligned_cols=35 Identities=26% Similarity=0.237 Sum_probs=30.3
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
++|+|||||..|+-+|..|++ .|. +|+|+++++.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~--------------------~G~-~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR--------------------HGY-SVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEcCCCCC
Confidence 579999999999999999986 676 59999988654
No 470
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.14 E-value=0.49 Score=38.31 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=29.1
Q ss_pred eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
+|+|||+|..|...|..|.+.| -.+++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G-v~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG-VGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEcCCC
Confidence 5899999999999999999998 23899999763
No 471
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.08 E-value=0.13 Score=50.86 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=31.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
.+.+|+|+|+|++|+.++..++..| .+|+++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 4689999999999999999999998 7899998764
No 472
>PRK13984 putative oxidoreductase; Provisional
Probab=92.92 E-value=0.19 Score=51.06 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=44.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc-------c--CCCH---HHH
Q 019876 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ-------A--ACTA---KEL 224 (334)
Q Consensus 157 ~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~-------~--~~~~---~~~ 224 (334)
..+++|+|||+|..|+.+|..|.+ .|. +|+|+++.+... . .... ...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~--------------------~G~-~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~ 339 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLAT--------------------MGY-EVTVYESLSKPGGVMRYGIPSYRLPDEALDKD 339 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecCCCCCceEeecCCcccCCHHHHHHH
Confidence 468899999999999999999996 675 699998876431 0 1112 122
Q ss_pred HHHHcCCceEEEEccC
Q 019876 225 REILGIKNLYVHIRED 240 (334)
Q Consensus 225 ~~~l~~~gv~~~~~~~ 240 (334)
.+.++..|++++++..
T Consensus 340 ~~~~~~~gv~~~~~~~ 355 (604)
T PRK13984 340 IAFIEALGVKIHLNTR 355 (604)
T ss_pred HHHHHHCCcEEECCCE
Confidence 3456677899887654
No 473
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.89 E-value=0.12 Score=44.21 Aligned_cols=33 Identities=33% Similarity=0.461 Sum_probs=24.5
Q ss_pred EEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
+|||+|..|+-+|..|.+ .|..+|+|++|.+.+
T Consensus 1 ~IIGaG~aGl~~a~~l~~--------------------~g~~~v~v~e~~~~~ 33 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE--------------------RGIDPVVVLERNDRP 33 (203)
T ss_dssp EEE--SHHHHHHHHHHHH--------------------TT---EEEEESSSSS
T ss_pred CEECcCHHHHHHHHHHHh--------------------CCCCcEEEEeCCCCC
Confidence 699999999999999986 687669999998543
No 474
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.88 E-value=0.17 Score=50.85 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=50.2
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceE
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 98 (334)
..+++|+|.|..|...|..|.+.+ .+++++|+++. ..+. +++.+..++.+...+.+
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g--~~vvvId~d~~------------------~~~~----~~~~g~~~i~GD~~~~~ 472 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAG--IPLVVIETSRT------------------RVDE----LRERGIRAVLGNAANEE 472 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCC--CCEEEEECCHH------------------HHHH----HHHCCCeEEEcCCCCHH
Confidence 368999999999999999999987 89999998631 1111 23346666555332211
Q ss_pred Eeccc-ceeccCeEEEeccC
Q 019876 99 VSLSE-LRQLYHVVVLAYGA 117 (334)
Q Consensus 99 v~~~~-~~~~yd~lIlATGs 117 (334)
+ +++ +-.++|.++++++.
T Consensus 473 ~-L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 473 I-MQLAHLDCARWLLLTIPN 491 (558)
T ss_pred H-HHhcCccccCEEEEEcCC
Confidence 1 122 22378999999986
No 475
>PRK06753 hypothetical protein; Provisional
Probab=92.87 E-value=0.14 Score=48.46 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=29.9
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
+|+|||||.+|+-+|..|++ .|. +|+|++|++.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~--------------------~g~-~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE--------------------QGH-EVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEecCCcc
Confidence 69999999999999999996 676 59999998754
No 476
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=0.14 Score=49.92 Aligned_cols=36 Identities=25% Similarity=0.220 Sum_probs=31.9
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~ 216 (334)
+||+|+|+|..|+-+|.+|++ .|. +|||.++++++-
T Consensus 1 ~rVai~GaG~AgL~~a~~La~--------------------~g~-~vt~~ea~~~~G 36 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELAD--------------------AGY-DVTLYEARDRLG 36 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHh--------------------CCC-ceEEEeccCccC
Confidence 589999999999999999997 676 599999997653
No 477
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.74 E-value=0.16 Score=47.01 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=31.0
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
++|.|||+|..|...|..|++.| ++|+++|+.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G--~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG--HEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC--CeeEEEeCCHH
Confidence 58999999999999999999997 89999998753
No 478
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=92.71 E-value=0.13 Score=50.22 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.6
Q ss_pred CeEEEEcCCHHHHHHHHHHcc
Q 019876 160 DTAVILGQGNVALDVARILLR 180 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~ 180 (334)
++|+|||||.+|+-+|..|.+
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~ 22 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEK 22 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 579999999999999999986
No 479
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=92.70 E-value=0.13 Score=48.88 Aligned_cols=31 Identities=26% Similarity=0.200 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876 29 PAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (334)
Q Consensus 29 ~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~ 61 (334)
.|||+||.+|++.| .+|+|+|+++.+||.+.
T Consensus 1 iaGL~aA~~L~~~G--~~v~vlEa~~r~GGr~~ 31 (450)
T PF01593_consen 1 IAGLAAAYYLAKAG--YDVTVLEASDRVGGRIR 31 (450)
T ss_dssp HHHHHHHHHHHHTT--TEEEEEESSSSSBTTS-
T ss_pred ChHHHHHHHHHhCC--CCEEEEEcCCCCCcceE
Confidence 48999999999998 89999999999999764
No 480
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.68 E-value=0.16 Score=46.50 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=29.4
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
|+|+|||+|..|...|..|.+.+ .+|++++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g--~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG--HDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECC
Confidence 57999999999999999999987 899999975
No 481
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=92.68 E-value=1 Score=44.45 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=23.2
Q ss_pred eEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876 281 RELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (334)
Q Consensus 281 ~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~ 311 (334)
.||++++++.++++. . +++++.+|.+.+
T Consensus 142 ~gi~i~~~~~v~~l~--~-~~g~v~Gv~~~~ 169 (488)
T TIGR00551 142 PNIRIIEGENALDLL--I-ETGRVVGVWVWN 169 (488)
T ss_pred CCcEEEECeEeeeee--c-cCCEEEEEEEEE
Confidence 689999999999998 4 367888887765
No 482
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.66 E-value=0.2 Score=46.48 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=30.3
Q ss_pred CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
|+|.|||+|..|.++|..|...+.-.+++++|++.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 58999999999999999999886335899999864
No 483
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=92.62 E-value=0.14 Score=47.40 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=26.2
Q ss_pred ceEEEEEeccccceeeccccCCCCeeEEEEEEeeeec
Q 019876 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG 316 (334)
Q Consensus 280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~ 316 (334)
+.|++|++++.+++|. - +++++++|++.++.+..
T Consensus 159 ~~Gv~i~~~~~V~~i~--~-~~~~v~gv~~~~g~i~a 192 (358)
T PF01266_consen 159 RAGVEIRTGTEVTSID--V-DGGRVTGVRTSDGEIRA 192 (358)
T ss_dssp HTT-EEEESEEEEEEE--E-ETTEEEEEEETTEEEEE
T ss_pred Hhhhhccccccccchh--h-ccccccccccccccccc
Confidence 4589999999999998 3 35788889988766554
No 484
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.60 E-value=0.23 Score=43.65 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=30.9
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
+.++|+|||||..+..=+..|.+.+ .+|+|+.+.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~g--A~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKG--CYVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCC
Confidence 5679999999999999999999987 999999865
No 485
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.59 E-value=0.2 Score=40.83 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=64.5
Q ss_pred EEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCe---EEceE
Q 019876 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV---TLGSS 98 (334)
Q Consensus 22 vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~---~v~~~ 98 (334)
|+|+|+|..|...|..|.+.+ .+|+++.+.+ . . +.+...++.+.... .+...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--~~V~l~~r~~-------------------~---~-~~~~~~g~~~~~~~~~~~~~~~ 55 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--HDVTLVSRSP-------------------R---L-EAIKEQGLTITGPDGDETVQPP 55 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--CEEEEEESHH-------------------H---H-HHHHHHCEEEEETTEEEEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCC--CceEEEEccc-------------------c---H-HhhhheeEEEEecccceecccc
Confidence 789999999999999999976 9999998752 0 1 11344466665444 11111
Q ss_pred Eeccc---ceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHH
Q 019876 99 VSLSE---LRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (334)
Q Consensus 99 v~~~~---~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A 175 (334)
..... ....||.||+|+=+. ... +.+..+... +.....|+++-+|.-..|..
T Consensus 56 ~~~~~~~~~~~~~D~viv~vKa~-~~~---------------~~l~~l~~~---------~~~~t~iv~~qNG~g~~~~l 110 (151)
T PF02558_consen 56 IVISAPSADAGPYDLVIVAVKAY-QLE---------------QALQSLKPY---------LDPNTTIVSLQNGMGNEEVL 110 (151)
T ss_dssp EEESSHGHHHSTESEEEE-SSGG-GHH---------------HHHHHHCTG---------EETTEEEEEESSSSSHHHHH
T ss_pred cccCcchhccCCCcEEEEEeccc-chH---------------HHHHHHhhc---------cCCCcEEEEEeCCCCcHHHH
Confidence 11111 234799999999773 111 122222211 11345799999997777666
Q ss_pred HHHc
Q 019876 176 RILL 179 (334)
Q Consensus 176 ~~L~ 179 (334)
....
T Consensus 111 ~~~~ 114 (151)
T PF02558_consen 111 AEYF 114 (151)
T ss_dssp HCHS
T ss_pred HHHc
Confidence 5443
No 486
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=92.53 E-value=0.16 Score=49.55 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=19.7
Q ss_pred CeEEEEcCCHHHHHHHHHHcc
Q 019876 160 DTAVILGQGNVALDVARILLR 180 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~ 180 (334)
++|+|||||.+|+-+|..|.+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~ 23 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEK 23 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHh
Confidence 579999999999999999986
No 487
>PLN02697 lycopene epsilon cyclase
Probab=92.52 E-value=0.81 Score=45.67 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=29.7
Q ss_pred CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (334)
Q Consensus 160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~ 216 (334)
-.|+|||+|..|+-+|..|++ .|. +|.++++..++.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak--------------------~Gl-~V~LIe~~~p~~ 144 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAK--------------------LGL-NVGLIGPDLPFT 144 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHh--------------------CCC-cEEEecCcccCC
Confidence 479999999999999999986 566 599998765443
No 488
>PRK06175 L-aspartate oxidase; Provisional
Probab=92.52 E-value=0.72 Score=44.84 Aligned_cols=28 Identities=4% Similarity=0.007 Sum_probs=22.0
Q ss_pred ceEEEEEeccccceeeccccCCCCeeEEEEE
Q 019876 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFE 310 (334)
Q Consensus 280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~ 310 (334)
..||+|++++.++.|+ . +++++.+|...
T Consensus 141 ~~gV~i~~~t~v~~Li--~-~~~~v~Gv~~~ 168 (433)
T PRK06175 141 RKNITIIENCYLVDII--E-NDNTCIGAICL 168 (433)
T ss_pred cCCCEEEECcEeeeeE--e-cCCEEEEEEEE
Confidence 4589999999999987 4 35788887653
No 489
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.48 E-value=0.2 Score=45.87 Aligned_cols=35 Identities=31% Similarity=0.318 Sum_probs=31.5
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~ 55 (334)
..+|.|||+|..|...|..++..| ++|+++|..+.
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~ 39 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAG--VDVLVFETTEE 39 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHH
Confidence 358999999999999999999987 99999998754
No 490
>PRK07208 hypothetical protein; Provisional
Probab=92.44 E-value=0.17 Score=49.69 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=28.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (334)
Q Consensus 159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~ 213 (334)
.++|+|||||.+|+-+|..|.+ .|. +|+|+++++
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~--------------------~g~-~v~v~E~~~ 37 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLK--------------------RGY-PVTVLEADP 37 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHH--------------------CCC-cEEEEecCC
Confidence 4689999999999999999996 465 488888764
No 491
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.38 E-value=0.19 Score=45.57 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (334)
Q Consensus 158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~ 212 (334)
...+|+|||.|.+|.++|..|++ .|+.+++|+...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar--------------------~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALAR--------------------TGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHH--------------------cCCCEEEEEeCC
Confidence 56899999999999999999997 788899999876
No 492
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.36 E-value=0.21 Score=47.54 Aligned_cols=34 Identities=29% Similarity=0.358 Sum_probs=30.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
...+|+|||+|.+|..+|..+.+.| .+|++++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECC
Confidence 3568999999999999999999997 899999975
No 493
>PRK07588 hypothetical protein; Provisional
Probab=92.35 E-value=0.17 Score=48.20 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=29.7
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
+|+|||||.+|+-+|..|++ .|. +|+|+++++..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR--------------------YGH-EPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHH--------------------CCC-ceEEEeCCCCc
Confidence 69999999999999999996 676 59999988654
No 494
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.33 E-value=0.19 Score=46.49 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=30.1
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~ 53 (334)
.|+|+|||+|..|...|.+|.+.| .+|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG--LPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC--CCeEEEEec
Confidence 468999999999999999999987 899999885
No 495
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.28 E-value=0.27 Score=45.59 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=31.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~ 54 (334)
+++||+|||+|..|.++|..|...+-..++.|+|...
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4579999999999999999998876456899999764
No 496
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.21 E-value=0.6 Score=41.17 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC----CCCcccccccc-CCCCcchhHHHHHHHHHhhcCCcEEEeC
Q 019876 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL----PTPFGLVRSGV-APDHPETKIVINQFSRVVQHERCSFFGN 92 (334)
Q Consensus 18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~----~~~gg~~~~~~-~p~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (334)
...+|+|||+|..|..+|..|.+.| -.+++|+|.+ ..++....+.. --+....+.+.+.+.+......++.+..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Q ss_pred eEEceEEecccceeccCeEEEeccC
Q 019876 93 VTLGSSVSLSELRQLYHVVVLAYGA 117 (334)
Q Consensus 93 ~~v~~~v~~~~~~~~yd~lIlATGs 117 (334)
.. ..-...+.-..+|.||.|+..
T Consensus 99 ~i--~~~~~~~~~~~~DvVi~~~d~ 121 (228)
T cd00757 99 RL--DAENAEELIAGYDLVLDCTDN 121 (228)
T ss_pred ee--CHHHHHHHHhCCCEEEEcCCC
No 497
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=92.21 E-value=0.17 Score=47.93 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=27.8
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~ 213 (334)
.|+|||||.+|+-+|..|++ .|. +|+|+++.+
T Consensus 2 dvvIIGaGi~G~s~A~~La~--------------------~g~-~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK--------------------HGK-KTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeccC
Confidence 58999999999999999996 565 699999864
No 498
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=92.20 E-value=0.21 Score=48.03 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=29.5
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~ 215 (334)
+|+|||||..|+-+|..|++ .|. +|.+++++...
T Consensus 2 ~VvIVGaGPAG~~aA~~la~--------------------~G~-~V~llE~~~~~ 35 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS--------------------AGI-QTFLLERKPDN 35 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh--------------------CCC-cEEEEecCCCC
Confidence 69999999999999999996 676 59999987543
No 499
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=92.18 E-value=0.17 Score=47.83 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=28.3
Q ss_pred eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (334)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~ 213 (334)
.|+|||||.+|+-+|..|++ .|. +|+|++|..
T Consensus 5 dv~IIGgGi~G~s~A~~L~~--------------------~g~-~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLAR--------------------RGL-RVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeccc
Confidence 59999999999999999996 564 699999875
No 500
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.17 E-value=0.079 Score=51.82 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=34.2
Q ss_pred CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (334)
Q Consensus 19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg 58 (334)
..+|+|||||..|..||.-+..+| +++.++|+++...|
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRG--LktaLVE~~DF~SG 104 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRG--LKTALVEAGDFASG 104 (680)
T ss_pred cccEEEECCCccCcceeehhhccc--ceeEEEecccccCC
Confidence 489999999999999999999997 99999999976544
Done!