BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019877
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
Length = 243
Score = 263 bits (672), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 178/243 (73%), Gaps = 3/243 (1%)
Query: 81 NGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN 140
N MS+ SY+ R+LLK+SGEAL GD IDPK+ +A EV + G +VA+V+GGGN
Sbjct: 2 NAMSELSYR--RILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGN 59
Query: 141 IFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYI 200
IFRGA A SG+DR + D++GMLATV+NA+ +Q +E +G RV +A ++++V E +I
Sbjct: 60 IFRGAGLAA-SGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFI 118
Query: 201 RRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN 260
RRRA+RHLEKGR+ IFAAGTGNPFFTTD+ AALR EI A+++LKAT VDGVYD +P+++
Sbjct: 119 RRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKH 178
Query: 261 PNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 320
+A D+LTY EV + L VMD A L +++++P+ +F +++PG + + + G ++GTL
Sbjct: 179 SDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTL 238
Query: 321 IGG 323
+ G
Sbjct: 239 VQG 241
>pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|B Chain B, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|C Chain C, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|D Chain D, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|E Chain E, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|F Chain F, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
Length = 281
Score = 254 bits (648), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 122/232 (52%), Positives = 166/232 (71%), Gaps = 2/232 (0%)
Query: 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG 149
+ RVLLK+ GE G +DP + +AR++A V R G+++A+V+GGGN FRGA
Sbjct: 50 YSRVLLKLGGEMFGGGQV-GLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQ- 107
Query: 150 NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 209
G++R+ +DY+GML TVMN++ LQ +E GI TRVQTA M +VAEPY+ RAVRHLE
Sbjct: 108 QLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLE 167
Query: 210 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL 269
KGRVVIF AG G P+F+TDT AA R EI A+VVL A VDGV+ ++PR NP A LL +
Sbjct: 168 KGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAV 227
Query: 270 TYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
+++EV + L V D TA +LC +N +P++VFNL GNIA+A++GE++GTL+
Sbjct: 228 SHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLV 279
>pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|B Chain B, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|C Chain C, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
Length = 252
Score = 240 bits (613), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 119/234 (50%), Positives = 164/234 (70%), Gaps = 2/234 (0%)
Query: 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 148
K+QR+L+K+SGEALAG+ ID AIA+E+A V G+++A+V+GGGN++RG AA
Sbjct: 6 KYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAA 65
Query: 149 GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 208
++G DR ADY G L TV NA+ +++ G+ TRVQTA VAEPYIR RA+RHL
Sbjct: 66 -DAGXDRVQADYTGXLGTVXNALVXADSLQHYGVDTRVQTAIPXQNVAEPYIRGRALRHL 124
Query: 209 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLD 267
EK R+V+F AG G+P+F+TDT AALR AEI A+ +L A N VDGVY+ +P+++ NA D
Sbjct: 125 EKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILXAKNGVDGVYNADPKKDANAVKFD 184
Query: 268 TLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
LT+ EV + L + D TA TL +N+I +VVFN N+ GNI + + GE +GT +
Sbjct: 185 ELTHGEVIKRGLKIXDATASTLSXDNDIDLVVFNXNEAGNIQRVVFGEHIGTTV 238
>pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase
pdb|2A1F|B Chain B, Crystal Structure Of Uridylate Kinase
pdb|2A1F|C Chain C, Crystal Structure Of Uridylate Kinase
pdb|2A1F|D Chain D, Crystal Structure Of Uridylate Kinase
pdb|2A1F|E Chain E, Crystal Structure Of Uridylate Kinase
pdb|2A1F|F Chain F, Crystal Structure Of Uridylate Kinase
Length = 247
Score = 228 bits (581), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 110/239 (46%), Positives = 167/239 (69%), Gaps = 3/239 (1%)
Query: 83 MSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF 142
+S+P YK R+LLK+SGEAL G+ IDP I +A E+ + +G+EV++V+GGGN+F
Sbjct: 3 LSQPIYK--RILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLF 60
Query: 143 RGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRR 202
RGA A +G++R D++GMLATVMN + ++ ++ + ++ +AF+++ + + Y
Sbjct: 61 RGAKLA-KAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWS 119
Query: 203 RAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN 262
A++ L + RVVIF+AGTGNPFFTTD+ A LR EI A+VVLKAT VDGVYD +P +NP+
Sbjct: 120 EAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPD 179
Query: 263 ARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
A+L L+Y EV K+L VMD++A TL +++ +P+ VFN+ +PG + + + G GT I
Sbjct: 180 AKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTI 238
>pdb|4A7W|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7W|B Chain B, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|B Chain B, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|C Chain C, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|D Chain D, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|E Chain E, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|F Chain F, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
Length = 240
Score = 228 bits (580), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 121/228 (53%), Positives = 167/228 (73%)
Query: 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 148
K +RVL+K SGEALAGD+ ID + IA+E+ S+ IEV IV+GGGNI RG SAA
Sbjct: 6 KNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAA 65
Query: 149 GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 208
+ R+S DY+GMLATV+NA+ +Q +E IG+ TRVQ+A + E+ E YI R+A+RHL
Sbjct: 66 QGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHL 125
Query: 209 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 268
EKGRVVIF AGTGNPFFTTDTAA LR EI +++++KAT VDG+YD +P + +A+ LDT
Sbjct: 126 EKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDT 185
Query: 269 LTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGER 316
L+Y + D+ VMD TAI+L ++N +P+VV N+ + GN+ + I+ ++
Sbjct: 186 LSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQ 233
>pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp
pdb|2BND|B Chain B, The Structure Of E.Coli Ump Kinase In Complex With Udp
Length = 241
Score = 221 bits (564), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 159/238 (66%), Gaps = 3/238 (1%)
Query: 84 SKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 143
+KP YK R+LLK+SGEAL G ID I +A+E+ + LGI+V +V+GGGN+FR
Sbjct: 5 AKPVYK--RILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFR 62
Query: 144 GASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRR 203
GA A +G++R D++GMLATVMN + ++ + + R+ +A ++ V + Y
Sbjct: 63 GAGLA-KAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNAVCDSYSWAE 121
Query: 204 AVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNA 263
A+ L RVVI +AGTGNPFFTTD+AA LR EI A VVLKAT VDGV+ +P ++P A
Sbjct: 122 AISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTA 181
Query: 264 RLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
+ + LTY EV K+L VMD+ A TL +++ +P+ VFN+N+PG + + + GE+ GTLI
Sbjct: 182 TMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLI 239
>pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2BNE|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2V4Y|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|C Chain C, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|D Chain D, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|E Chain E, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|F Chain F, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
Length = 241
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 159/238 (66%), Gaps = 3/238 (1%)
Query: 84 SKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 143
+KP YK R+LLK+SGEAL G ID I +A+E+ + LGI+V +V+GGGN+FR
Sbjct: 5 AKPVYK--RILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFR 62
Query: 144 GASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRR 203
GA A +G++R D++GMLATVMN + ++ + + R+ +A ++ V + Y
Sbjct: 63 GAGLA-KAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWAE 121
Query: 204 AVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNA 263
A+ L RVVI +AGTGNPFFTTD+AA LR EI A VVLKAT VDGV+ +P ++P A
Sbjct: 122 AISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTA 181
Query: 264 RLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
+ + LTY EV K+L VMD+ A TL +++ +P+ VFN+N+PG + + + GE+ GTLI
Sbjct: 182 TMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLI 239
>pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|B Chain B, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|C Chain C, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
Length = 239
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/233 (51%), Positives = 163/233 (69%), Gaps = 1/233 (0%)
Query: 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 148
K++RVLLK+SGE+L G I+ + E+A V + G++V IVVGGGNIFRG SA
Sbjct: 6 KYKRVLLKLSGESLXGSDPFGINHDTIVQTVGEIAEVVKXGVQVGIVVGGGNIFRGVSAQ 65
Query: 149 GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 208
S DR++ADY G ATV NA+ L+ E++GI RVQ+A ++AE Y R +A+++L
Sbjct: 66 AGS-XDRATADYXGXXATVXNALALKDAFETLGIKARVQSALSXQQIAETYARPKAIQYL 124
Query: 209 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 268
E+G+VVIFAAGTGNPFFTTDTAAALR AE N +V LKATNVDGVY +P+++P+A +T
Sbjct: 125 EEGKVVIFAAGTGNPFFTTDTAAALRGAEXNCDVXLKATNVDGVYTADPKKDPSATRYET 184
Query: 269 LTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
+T+ E K+L V D TA LC+E + +VVF + + G++ + I GE GTL+
Sbjct: 185 ITFDEALLKNLKVXDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLV 237
>pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp
pdb|2BNF|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Utp
Length = 241
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 150/238 (63%), Gaps = 3/238 (1%)
Query: 84 SKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 143
+KP YK R+LLK+SGEAL G ID I A+E+ + LGI+V +V+GGGN+FR
Sbjct: 5 AKPVYK--RILLKLSGEALQGTEGFGIDASILDRXAQEIKELVELGIQVGVVIGGGNLFR 62
Query: 144 GASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRR 203
GA A +G +R D+ G LATV N + + + + R+ +A ++ V + Y
Sbjct: 63 GAGLA-KAGXNRVVGDHXGXLATVXNGLAXRDALHRAYVNARLXSAIPLNGVCDSYSWAE 121
Query: 204 AVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNA 263
A+ L RVVI +AGTGNPFFTTD+AA LR EI A VVLKAT VDGV+ +P ++P A
Sbjct: 122 AISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTA 181
Query: 264 RLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
+ LTY EV K+L V D+ A TL +++ +P+ VFN N+PG + + + GE+ GTLI
Sbjct: 182 TXYEQLTYSEVLEKELKVXDLAAFTLARDHKLPIRVFNXNKPGALRRVVXGEKEGTLI 239
>pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|B Chain B, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|C Chain C, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
Length = 255
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 146/234 (62%), Gaps = 3/234 (1%)
Query: 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG 149
++RVL+K+SG ALA + + K IA E+ S+ LGIEV+IV+GGGNIFRG A
Sbjct: 12 YKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRG-HLAE 70
Query: 150 NSGLDRSSADYIGMLATVMNAIFLQATMES-IGIPTRVQTAFRMSEVAEPYIRRRAVRHL 208
G+DR AD IG L T++N++ L+ + S RV T+ + VAEPYIR RAV HL
Sbjct: 71 EWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHL 130
Query: 209 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLD 267
+ G +VIF G G PF TTD + R E+N++ +L A VDGV+ +P+ N +A++
Sbjct: 131 DNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYR 190
Query: 268 TLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
L Y +V +++ VMD A+ L ++ N+P VFN ++PG + + GE VGTLI
Sbjct: 191 KLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLI 244
>pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|B Chain B, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|C Chain C, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|D Chain D, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|E Chain E, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|F Chain F, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
Length = 256
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 147/232 (63%), Gaps = 3/232 (1%)
Query: 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN 150
QR+++K+SG L + + ID +A ++ +++ I V+IV+GGGNI+RG S A
Sbjct: 25 QRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYI-VSIVLGGGNIWRG-SIAKE 82
Query: 151 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 210
+DR+ AD +GM+AT++N + L+ + + + T V +A + ++ + +EK
Sbjct: 83 LDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIKCDKLVHESSANNIKKAIEK 142
Query: 211 GRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTL 269
+V+IF AGTG P+FTTD+ AA+R AE + ++L N VDGVYD +P+ NPNA+ + +
Sbjct: 143 EQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHI 202
Query: 270 TYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
T+ +++L VMD TA+ LCQENNI ++VFN+++P I ++ + T++
Sbjct: 203 TFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIV 254
>pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
pdb|2IJ9|B Chain B, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
Length = 219
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 101/204 (49%), Gaps = 30/204 (14%)
Query: 131 EVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIG--IPTRVQ 187
+V +VVGGG + R +A G + DYIG+ AT +NA+ L + + S +P
Sbjct: 34 QVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKVPVDFM 93
Query: 188 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 247
A +S++ RVV+ G P TTD AAL I A+V + AT
Sbjct: 94 EAEELSKLY---------------RVVVM--GGTFPGHTTDATAALLAEFIKADVFINAT 136
Query: 248 NVDGVYDDNPRRNPNARLLDTLTYQ---EVTSKDLS------VMDMTAITLCQENNIPVV 298
NVDGVY +P+ + +A D L+ Q E+ S+ + V+D+ A + + + I
Sbjct: 137 NVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTY 196
Query: 299 VFNLNQPGNIAKAIQGERVGTLIG 322
V L P NI KA++GE VGT+I
Sbjct: 197 VI-LGTPENIMKAVKGEAVGTVIA 219
>pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands
pdb|2BRX|B Chain B, Ump Kinase From Pyrococcus Furiosus Without Ligands
Length = 244
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 28/240 (11%)
Query: 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN 150
R++ + G L +N D IA ++ V+ EVA+VVGGG + R A
Sbjct: 21 RIVFDIGGSVLV---PENPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEK 76
Query: 151 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 210
+ D+IG+ T NA+ L A + P V E + L+K
Sbjct: 77 FNSSETFKDFIGIQITRANAMLLIAALREKAYPV----------VVEDFWEAWKAVQLKK 126
Query: 211 GRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT 270
I G +P TTD AAL + A++++ TNVDGVY +P+++P A+ + +
Sbjct: 127 ----IPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMK 182
Query: 271 YQ---EVTSKDL------SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
+ E+ K + SV+D A + + I +V ++ + I+G+ GT I
Sbjct: 183 PEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 242
>pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
pdb|2JI5|B Chain B, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
Length = 227
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 104/240 (43%), Gaps = 28/240 (11%)
Query: 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN 150
R++ + G L +N D IA ++ V+ EVA+VVGGG + R A
Sbjct: 4 RIVFDIGGSVLV---PENPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEK 59
Query: 151 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 210
+ D+IG+ T NA+ L A + P V E + L+K
Sbjct: 60 FNSSETFKDFIGIQITRANAMLLIAALREKAYPV----------VVEDFWEAWKAVQLKK 109
Query: 211 GRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT 270
I G +P TTD AAL + A++++ TNVDGVY +P+++P A+ + +
Sbjct: 110 ----IPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMK 165
Query: 271 YQ---EVTSKDL------SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
+ E+ K + SV+D A + I +V ++ + I+G+ GT I
Sbjct: 166 PEELLEIVGKGIEKAGSSSVIDPLAAKIIARTGIKTIVIGKEDAKDLFRVIKGDHNGTTI 225
>pdb|2J4J|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4K|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4L|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|G Chain G, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|H Chain H, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|I Chain I, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|J Chain J, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|K Chain K, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|L Chain L, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
Length = 226
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 113/240 (47%), Gaps = 30/240 (12%)
Query: 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR-GASAAGNS 151
++LK+SG+ D+ N+ + + + + + G V IV GGG+ R A
Sbjct: 3 IILKISGKFFDEDNVDNL-----IVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREI 57
Query: 152 GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKG 211
G+ + D +G+ A+ +NA + +++ + + + E +I+ + G
Sbjct: 58 GIGEAYLDLLGIWASRLNAYLVMFSLQDLA-------YMHVPQSLEEFIQDWS-----HG 105
Query: 212 RVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY 271
+VV+ G P +T AAL +++ ++ ATNVDGVY+ +PR + +L+ LT
Sbjct: 106 KVVV--TGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTT 163
Query: 272 QE----------VTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
Q+ V + ++D AI + + + I V+V N + I ++GE V ++I
Sbjct: 164 QDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSII 223
>pdb|2BRI|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
pdb|2BRI|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
Length = 225
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 28/240 (11%)
Query: 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN 150
R++ + G L +N D IA ++ V+ EVA+VVGGG + R A
Sbjct: 2 RIVFDIGGSVLV---PENPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEK 57
Query: 151 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 210
+ D+IG+ T NA L A + P V E + L+K
Sbjct: 58 FNSSETFKDFIGIQITRANAXLLIAALREKAYPV----------VVEDFWEAWKAVQLKK 107
Query: 211 GRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT 270
I G +P TTD AAL + A++++ TNVDGVY +P+++P A+ +
Sbjct: 108 ----IPVXGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKXK 163
Query: 271 YQ---EVTSKDL------SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
+ E+ K + SV+D A + + I +V ++ + I+G+ GT I
Sbjct: 164 PEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 223
>pdb|2BMU|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
pdb|2BMU|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
Length = 226
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 28/240 (11%)
Query: 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN 150
R++ + G L +N D IA ++ V+ EVA+VVGGG + R A
Sbjct: 3 RIVFDIGGSVLV---PENPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEK 58
Query: 151 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 210
+ D+IG+ T NA L A + P V E + L+K
Sbjct: 59 FNSSETFKDFIGIQITRANAXLLIAALREKAYPV----------VVEDFWEAWKAVQLKK 108
Query: 211 GRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT 270
I G +P TTD AAL + A++++ TNVDGVY +P+++P A+ +
Sbjct: 109 ----IPVXGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKXK 164
Query: 271 YQ---EVTSKDL------SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
+ E+ K + SV+D A + + I +V ++ + I+G+ GT I
Sbjct: 165 PEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 224
>pdb|3LL9|A Chain A, X-Ray Structures Of Isopentenyl Phosphate Kinase
pdb|3LL9|B Chain B, X-Ray Structures Of Isopentenyl Phosphate Kinase
Length = 269
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 241 EVVLKATNVDGVYDDNPRRNPNARLLDTL-TYQEVTSKDLSV-MDMTA--------ITLC 290
E V+ T+VDGVY NP+++P+ARLLD + + ++ S D ++ D+T + L
Sbjct: 174 ERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGXVGKIRELLLL 233
Query: 291 QENNIPVVVFNLNQPGNIAKAIQGERV-GTLIGG 323
E + + N PGNI +A+ GE V GT I G
Sbjct: 234 AEKGVESEIINAAVPGNIERALLGEEVRGTRITG 267
>pdb|4F6T|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein
(Mosto) From Azotobacter Vinelandii Loaded With Various
Polyoxometalates
Length = 268
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 223 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL--S 280
P + TD L + + ++ + DG+Y NP+ + +A + ++ E+ +K L S
Sbjct: 163 PPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHDS 222
Query: 281 VMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
+++ + L Q ++ V V N PGN+ +A+ GE VGT+I
Sbjct: 223 ILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTII 265
>pdb|2OGX|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein
From Azotobacter Vinelandii Loaded With
Polyoxotungstates (Wsto)
Length = 270
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 223 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL--S 280
P + TD L + + + + DG+Y NP+ + +A + ++ E +K L S
Sbjct: 165 PPYRTDAGCFLLAEQFGCKQXIFVKDEDGLYTANPKTSKDATFIPRISVDEXKAKGLHDS 224
Query: 281 VMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
+++ + L Q ++ V V N PGN+ +A+ GE VGT+I
Sbjct: 225 ILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTII 267
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 190 FRMSEVAEPYIRRRAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINA 240
F + V ++ R + L++G + + F T + TT D +AAL ++A
Sbjct: 164 FGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDA 223
Query: 241 EVVLKATNVDGVYDDNPRRNPNARLLDTLTY---QEVTSKDLSVMDMTAITLCQENNIPV 297
+++ T+V GVY +PR P AR + L+Y E+ V+ I E IP+
Sbjct: 224 DIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPI 283
Query: 298 VVFNLNQPGNIAKAIQGERVGTLI 321
+V N +P E GTLI
Sbjct: 284 LVKNTFEP---------ESEGTLI 298
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 190 FRMSEVAEPYIRRRAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINA 240
F + V ++ R + L++G + + F T + TT D +AAL ++A
Sbjct: 163 FGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDA 222
Query: 241 EVVLKATNVDGVYDDNPRRNPNARLLDTLTY---QEVTSKDLSVMDMTAITLCQENNIPV 297
+++ T+V GVY +PR P AR + L+Y E+ V+ I E IP+
Sbjct: 223 DIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPI 282
Query: 298 VVFNLNQPGNIAKAIQGERVGTLI 321
+V N +P E GTLI
Sbjct: 283 LVKNTFEP---------ESEGTLI 297
>pdb|3K4O|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From
Methanocaldococcus Jannaschii
pdb|3K4O|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From
Methanocaldococcus Jannaschii
pdb|3K4Y|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp
pdb|3K4Y|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp
pdb|3K52|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ip
pdb|3K52|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ip
pdb|3K56|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp Beta-S
pdb|3K56|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp Beta-S
Length = 266
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 214 VIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNP--RRNPNARLLDTLTY 271
++ G + D E+ A+++L AT+VDGV DN +R + L Y
Sbjct: 152 IVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNY 211
Query: 272 QEVT-SKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
+ S D++ I + ++N VFN N+ NI KA+ GE GT I
Sbjct: 212 LSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEI 262
>pdb|4F6T|A Chain A, The Crystal Structure Of The Molybdenum Storage Protein
(Mosto) From Azotobacter Vinelandii Loaded With Various
Polyoxometalates
Length = 244
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 58/148 (39%), Gaps = 21/148 (14%)
Query: 192 MSEVAEPYIRRRAVRHLEKGRVVIFAA----------GTGNPFFTTDTAAALRCAEINAE 241
+S V P + + HL R V+ +A G+ P DT A L A
Sbjct: 93 VSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAA 152
Query: 242 VVLKATNVDGVYDDNP--------RRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQEN 293
+ NVDG+Y +P R P D + D +++D+ A E
Sbjct: 153 GLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIER 212
Query: 294 NIPVVVFNLNQPGNIAKAIQGERVGTLI 321
V V N PG + A++GE VGTLI
Sbjct: 213 ---VQVVNGLVPGRLTAALRGEHVGTLI 237
>pdb|2OGX|A Chain A, The Crystal Structure Of The Molybdenum Storage Protein
From Azotobacter Vinelandii Loaded With
Polyoxotungstates (Wsto)
Length = 276
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 58/148 (39%), Gaps = 21/148 (14%)
Query: 192 MSEVAEPYIRRRAVRHLEKGRVVIFAA----------GTGNPFFTTDTAAALRCAEINAE 241
+S V P + + HL R V+ +A G+ P DT A L A
Sbjct: 125 VSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAA 184
Query: 242 VVLKATNVDGVYDDNP--------RRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQEN 293
+ NVDG+Y +P R P D + D +++D+ A E
Sbjct: 185 GLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVXATARHIER 244
Query: 294 NIPVVVFNLNQPGNIAKAIQGERVGTLI 321
V V N PG + A++GE VGTLI
Sbjct: 245 ---VQVVNGLVPGRLTAALRGEHVGTLI 269
>pdb|3LKK|A Chain A, Crystal Structure Of The Isopentenyl Phosphate Kinase
Substr Complex
pdb|3LKK|B Chain B, Crystal Structure Of The Isopentenyl Phosphate Kinase
Substr Complex
Length = 249
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 225 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 266
++ D A + +V + T+VDG+Y +P+RNP+A LL
Sbjct: 145 YSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLL 186
>pdb|3TVI|A Chain A, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|B Chain B, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|C Chain C, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|D Chain D, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|E Chain E, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|F Chain F, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|G Chain G, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|H Chain H, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|I Chain I, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|J Chain J, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|K Chain K, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|L Chain L, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
Length = 446
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 227 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLS-----V 281
+D ++ A +NA++ T+V G +PR N + + ++Y+E+ ++LS V
Sbjct: 188 SDVTGSIISAGVNADLYENWTDVSGFLXADPRIVENPKTISKISYKEL--RELSYXGATV 245
Query: 282 MDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE-----RVGTLIG--GTWNSTV 329
+ AI +++ IP+ + N N+P + I + +GT+ G G N TV
Sbjct: 246 LHEEAIFPVKDSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIAGKKNFTV 300
>pdb|3LL5|A Chain A, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
pdb|3LL5|B Chain B, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
pdb|3LL5|C Chain C, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
pdb|3LL5|D Chain D, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
Length = 249
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 225 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 266
++ D A + +V + T+VDG+Y +P+RNP+A LL
Sbjct: 145 YSGDDIXADXAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLL 186
>pdb|3AAW|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AAW|C Chain C, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AB2|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|C Chain C, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|E Chain E, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|G Chain G, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|I Chain I, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|K Chain K, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|M Chain M, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|O Chain O, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
Length = 421
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 247 TNVDGVYDDNPRRNPNARLLDTLTYQE------VTSKDLSVMDMTAITLCQENNIPVVVF 300
++VDGVY +PR PNA+ L+ L+++E V SK ++ + ++ + N+P+ V
Sbjct: 174 SDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSK---ILVLRSVEYARAFNVPLRVR 230
Query: 301 N--LNQPGNI 308
+ N PG +
Sbjct: 231 SSYSNDPGTL 240
>pdb|3AB4|A Chain A, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|C Chain C, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|E Chain E, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|G Chain G, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|I Chain I, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|K Chain K, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|M Chain M, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|O Chain O, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
Length = 421
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 247 TNVDGVYDDNPRRNPNARLLDTLTYQE------VTSKDLSVMDMTAITLCQENNIPVVVF 300
++VDGVY +PR PNA+ L+ L+++E V SK ++ + ++ + N+P+ V
Sbjct: 174 SDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSK---ILVLRSVEYARAFNVPLRVR 230
Query: 301 N--LNQPGNI 308
+ N PG +
Sbjct: 231 SSYSNDPGTL 240
>pdb|2AKO|A Chain A, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|B Chain B, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|C Chain C, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|D Chain D, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
Length = 251
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 224 FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY 271
F D+ +A +A++++ +++DG YD NP +A+ L+ +T+
Sbjct: 139 FGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITH 186
>pdb|2J5V|A Chain A, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5V|B Chain B, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5T|H Chain H, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|A Chain A, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|B Chain B, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|C Chain C, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|D Chain D, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|E Chain E, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|F Chain F, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|G Chain G, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
Length = 367
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 228 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL-----TYQEVTSKDLSVM 282
D +AL A+ +L T+ G+Y +PR NP A L+ + + + +S +
Sbjct: 150 DNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGL 209
Query: 283 -------DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321
+ A + I ++ ++PG I ++G VGTL
Sbjct: 210 GTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLF 255
>pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis
pdb|3L76|B Chain B, Crystal Structure Of Aspartate Kinase From Synechocystis
Length = 600
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 203 RAVRHLEKGRVVIFAAGTG-----NPFFTT------DTAAALRCAEINAEVVLKATNVDG 251
R HL +G+VV+ A G + TT DT+A A + A+ T+V G
Sbjct: 120 RLEHHLREGKVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPG 179
Query: 252 VYDDNPRRNPNARLLDTLTYQ---EVTSKDLSVMDMTAITLCQENNIPVVVFN--LNQPG 306
+ +PR P A+L+ +T E+ S V+ A+ + + IP+VV + ++PG
Sbjct: 180 ILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSDEPG 239
Query: 307 N 307
Sbjct: 240 T 240
>pdb|2W21|A Chain A, Crystal Structure Of The Aminoacid Kinase Domain Of The
Glutamate 5 Kinase Of Escherichia Coli
Length = 259
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 228 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL-----TYQEVTSKDLSVM 282
D +AL A+ +L T+ G+Y +PR NP A L+ + + + +S +
Sbjct: 150 DNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGL 209
Query: 283 -------DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 320
+ A + I ++ ++PG I ++G VGTL
Sbjct: 210 GTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTL 254
>pdb|3KLL|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180-Maltose Complex
Length = 1039
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 178 ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 237
E IG+ T ++++ + A +K R VI G +T DT A + +
Sbjct: 535 EGIGVVISNNTNLKLNDGESVVLHXGAAHKNQKYRAVILTTEDGVKNYTNDTDAPVAYTD 594
Query: 238 INAEVVLKATNVDG 251
N ++ TN+DG
Sbjct: 595 ANGDLHFTNTNLDG 608
>pdb|3HZ3|A Chain A, Lactobacillus Reuteri N-Terminally Truncated Glucansucrase
Gtf180(D1025n)-Sucrose Complex
Length = 1039
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 178 ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 237
E IG+ T ++++ + A +K R VI G +T DT A + +
Sbjct: 535 EGIGVVISNNTNLKLNDGESVVLHMGAAHKNQKYRAVILTTEDGVKNYTNDTDAPVAYTD 594
Query: 238 INAEVVLKATNVDG 251
N ++ TN+DG
Sbjct: 595 ANGDLHFTNTNLDG 608
>pdb|3KLK|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180 In Triclinic Apo- Form
Length = 1039
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 178 ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 237
E IG+ T ++++ + A +K R VI G +T DT A + +
Sbjct: 535 EGIGVVISNNTNLKLNDGESVVLHMGAAHKNQKYRAVILTTEDGVKNYTNDTDAPVAYTD 594
Query: 238 INAEVVLKATNVDG 251
N ++ TN+DG
Sbjct: 595 ANGDLHFTNTNLDG 608
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 139 GNIFRGASAAGNSGLDRSSADYIGMLATVMN-AIFLQATMESIGIPTRVQTAFRMS 193
G + A AG GLD + + + ++ A F + TM G+PTR+Q+ FR++
Sbjct: 465 GEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTM---GVPTRLQSQFRLT 517
>pdb|2PGW|A Chain A, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|B Chain B, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|C Chain C, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|D Chain D, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|E Chain E, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|F Chain F, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|G Chain G, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|H Chain H, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
Length = 384
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 138 GGNIFRGASAAGNSGLDRSSADYIGMLATV-MNAIFLQATMESIGIPTRVQTAFRMSEVA 196
G NI R A+ SG+D + D G LA + ++ + A +++G F E A
Sbjct: 95 GANIXRAANQI-FSGIDXAXWDLQGKLAGLPVHQLLGGAHRKAVGY-----FYFLQGETA 148
Query: 197 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYD 254
E R AV H + RV G G + AA+R +A + L A V+D
Sbjct: 149 EELARDAAVGHAQGERVFYLKVGRGEK-LDLEITAAVRGEIGDARLRLDANEGWSVHD 205
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 121 EVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIG--MLATVMNAIFLQATME 178
+V +EVA+ +G + GA G L+RS AD +ATV+ ++Q
Sbjct: 33 QVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVATVLGLTYVQVQKY 92
Query: 179 SIGIPTRVQTA 189
+ +P V+ A
Sbjct: 93 DLAVPLLVKVA 103
>pdb|2BE7|A Chain A, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
pdb|2BE7|B Chain B, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
pdb|2BE7|C Chain C, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
Length = 326
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 113 KITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS---ADYIGMLATVMN 169
K+ + E ++ TRL E AI GG++ G AGN+ L + AD I ++++ +
Sbjct: 59 KVIASCFFEASTRTRLSFETAIQRLGGSVI-GFDNAGNTSLAKKGETLADSISVISSYAD 117
Query: 170 AIFLQATME 178
A ++ E
Sbjct: 118 AFVMRHPQE 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,432,124
Number of Sequences: 62578
Number of extensions: 318247
Number of successful extensions: 941
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 866
Number of HSP's gapped (non-prelim): 49
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)