Query 019877
Match_columns 334
No_of_seqs 208 out of 1483
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:15:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00358 pyrH uridylate kinase 100.0 1E-42 2.2E-47 320.6 27.7 231 91-322 1-231 (231)
2 COG0528 PyrH Uridylate kinase 100.0 1.6E-42 3.5E-47 314.4 25.9 233 89-322 4-237 (238)
3 PRK14556 pyrH uridylate kinase 100.0 1.4E-42 3.1E-47 321.4 26.0 236 88-323 13-248 (249)
4 PRK14558 pyrH uridylate kinase 100.0 2.7E-42 5.8E-47 318.1 27.6 229 91-323 1-230 (231)
5 TIGR02075 pyrH_bact uridylate 100.0 6.3E-41 1.4E-45 309.5 26.8 232 90-322 1-233 (233)
6 cd04239 AAK_UMPK-like AAK_UMPK 100.0 6.7E-41 1.4E-45 308.4 26.0 229 92-322 1-229 (229)
7 cd04254 AAK_UMPK-PyrH-Ec UMP k 100.0 1.1E-40 2.4E-45 307.4 24.4 231 91-322 1-231 (231)
8 PRK14557 pyrH uridylate kinase 100.0 5.5E-40 1.2E-44 305.5 27.2 241 88-329 2-244 (247)
9 COG0263 ProB Glutamate 5-kinas 100.0 5.3E-39 1.1E-43 305.5 24.7 233 87-325 3-261 (369)
10 PRK12314 gamma-glutamyl kinase 100.0 5.8E-37 1.3E-41 288.4 25.6 232 88-324 7-265 (266)
11 cd04256 AAK_P5CS_ProBA AAK_P5C 100.0 1.8E-36 4E-41 287.3 24.4 231 88-322 6-284 (284)
12 PRK13402 gamma-glutamyl kinase 100.0 2.3E-36 5E-41 295.4 25.4 234 89-327 4-261 (368)
13 PTZ00489 glutamate 5-kinase; P 100.0 8.2E-36 1.8E-40 279.9 25.0 229 88-324 6-260 (264)
14 PRK05429 gamma-glutamyl kinase 100.0 3.1E-35 6.6E-40 288.6 26.6 237 87-327 5-265 (372)
15 cd04253 AAK_UMPK-PyrH-Pf AAK_U 100.0 8.6E-35 1.9E-39 266.5 23.2 211 92-322 1-221 (221)
16 TIGR01027 proB glutamate 5-kin 100.0 1.1E-34 2.4E-39 283.8 25.2 231 91-327 1-257 (363)
17 cd04241 AAK_FomA-like AAK_FomA 100.0 3.8E-35 8.2E-40 273.4 19.9 222 92-321 1-252 (252)
18 cd04242 AAK_G5K_ProB AAK_G5K_P 100.0 2.1E-34 4.5E-39 268.8 24.8 224 92-322 1-251 (251)
19 TIGR02076 pyrH_arch uridylate 100.0 1.1E-34 2.4E-39 265.5 22.2 211 93-322 1-221 (221)
20 cd02115 AAK Amino Acid Kinases 100.0 1.1E-34 2.3E-39 268.1 19.5 220 94-321 1-248 (248)
21 cd04246 AAK_AK-DapG-like AAK_A 100.0 4.5E-33 9.8E-38 257.8 23.4 214 92-322 1-239 (239)
22 cd04261 AAK_AKii-LysC-BS AAK_A 100.0 5.1E-33 1.1E-37 257.5 23.4 214 92-322 1-239 (239)
23 cd04255 AAK_UMPK-MosAB AAK_UMP 100.0 1.5E-32 3.2E-37 257.7 24.6 215 91-322 31-262 (262)
24 COG1608 Predicted archaeal kin 100.0 5E-33 1.1E-37 252.6 19.4 225 93-322 3-251 (252)
25 cd04234 AAK_AK AAK_AK: Amino A 100.0 1.7E-32 3.8E-37 252.3 22.5 204 92-322 1-227 (227)
26 PRK08841 aspartate kinase; Val 100.0 2.8E-32 6.1E-37 269.2 24.3 218 90-324 1-243 (392)
27 COG0527 LysC Aspartokinases [A 100.0 1.8E-32 3.9E-37 273.7 22.4 220 91-326 2-292 (447)
28 KOG1154 Gamma-glutamyl kinase 100.0 2.2E-32 4.8E-37 246.6 19.9 241 86-329 5-281 (285)
29 TIGR00656 asp_kin_monofn aspar 100.0 1.1E-31 2.5E-36 265.6 23.9 216 92-324 2-244 (401)
30 COG0548 ArgB Acetylglutamate k 100.0 4.4E-31 9.5E-36 245.8 22.8 222 90-323 2-265 (265)
31 TIGR01092 P5CS delta l-pyrroli 100.0 3.3E-31 7.1E-36 279.1 24.8 231 89-324 6-276 (715)
32 cd04260 AAK_AKi-DapG-BS AAK_AK 100.0 5.5E-31 1.2E-35 244.8 23.4 213 93-322 2-244 (244)
33 PRK14058 acetylglutamate/acety 100.0 2.6E-31 5.7E-36 250.2 21.2 215 92-323 1-267 (268)
34 PRK06635 aspartate kinase; Rev 100.0 6.6E-31 1.4E-35 260.4 22.8 218 90-324 1-243 (404)
35 cd04244 AAK_AK-LysC-like AAK_A 100.0 1E-30 2.2E-35 249.6 21.9 214 92-322 1-298 (298)
36 PRK08210 aspartate kinase I; R 100.0 1.4E-30 3E-35 258.2 23.3 218 90-324 1-248 (403)
37 PRK07431 aspartate kinase; Pro 100.0 1.7E-30 3.8E-35 268.7 23.8 218 90-325 1-246 (587)
38 PLN02512 acetylglutamate kinas 100.0 5.9E-30 1.3E-34 245.6 25.0 224 89-323 46-309 (309)
39 CHL00202 argB acetylglutamate 100.0 3.4E-30 7.3E-35 244.6 22.7 223 89-322 22-283 (284)
40 PRK12353 putative amino acid k 100.0 3E-30 6.5E-35 248.0 22.3 226 90-323 2-314 (314)
41 PRK00942 acetylglutamate kinas 100.0 2.5E-30 5.4E-35 245.2 20.6 221 89-323 22-282 (283)
42 cd04250 AAK_NAGK-C AAK_NAGK-C: 100.0 7.7E-30 1.7E-34 241.5 20.9 222 89-321 13-279 (279)
43 cd04259 AAK_AK-DapDC AAK_AK-Da 100.0 1.6E-29 3.5E-34 240.8 21.6 215 92-322 1-295 (295)
44 PLN02418 delta-1-pyrroline-5-c 100.0 3.8E-29 8.1E-34 263.3 25.4 232 88-324 13-284 (718)
45 cd04245 AAK_AKiii-YclM-BS AAK_ 100.0 4.8E-29 1E-33 236.7 22.2 212 92-322 1-288 (288)
46 cd04235 AAK_CK AAK_CK: Carbama 100.0 9E-29 1.9E-33 235.9 23.2 224 92-322 1-308 (308)
47 TIGR00657 asp_kinases aspartat 100.0 6.1E-29 1.3E-33 249.1 22.8 217 92-324 2-284 (441)
48 cd04238 AAK_NAGK-like AAK_NAGK 100.0 1.6E-29 3.5E-34 236.3 17.2 215 93-321 1-256 (256)
49 PRK06291 aspartate kinase; Pro 100.0 6.7E-29 1.5E-33 250.4 22.6 217 92-324 2-304 (465)
50 cd04257 AAK_AK-HSDH AAK_AK-HSD 100.0 8.2E-29 1.8E-33 236.0 22.0 214 92-322 1-294 (294)
51 TIGR00746 arcC carbamate kinas 100.0 1.3E-28 2.7E-33 235.7 23.1 222 91-322 1-309 (310)
52 cd04243 AAK_AK-HSDH-like AAK_A 100.0 1.7E-28 3.6E-33 233.8 21.8 213 92-322 1-293 (293)
53 cd04258 AAK_AKiii-LysC-EC AAK_ 100.0 2.1E-28 4.4E-33 232.8 22.0 212 92-322 1-292 (292)
54 cd04251 AAK_NAGK-UC AAK_NAGK-U 100.0 5.3E-29 1.1E-33 233.3 17.7 206 93-321 1-257 (257)
55 PRK08373 aspartate kinase; Val 100.0 3.2E-28 6.8E-33 235.7 22.7 214 90-324 3-280 (341)
56 cd04249 AAK_NAGK-NC AAK_NAGK-N 100.0 1.5E-28 3.3E-33 229.3 18.2 214 93-321 1-252 (252)
57 cd04247 AAK_AK-Hom3 AAK_AK-Hom 100.0 5.4E-28 1.2E-32 231.1 21.6 156 159-323 126-305 (306)
58 PRK09084 aspartate kinase III; 100.0 8.4E-28 1.8E-32 241.3 20.9 213 92-324 1-290 (448)
59 PRK05925 aspartate kinase; Pro 100.0 1.2E-27 2.6E-32 239.2 21.6 215 90-324 1-281 (440)
60 cd04240 AAK_UC AAK_UC: Unchara 100.0 6.9E-28 1.5E-32 218.4 18.1 192 94-321 1-203 (203)
61 PRK12454 carbamate kinase-like 100.0 6.2E-27 1.3E-31 223.3 24.0 227 90-323 2-313 (313)
62 PRK09034 aspartate kinase; Rev 100.0 3.6E-27 7.7E-32 237.2 22.9 214 92-324 1-290 (454)
63 PF00696 AA_kinase: Amino acid 100.0 1.6E-27 3.4E-32 219.6 18.2 202 91-301 1-242 (242)
64 PLN02551 aspartokinase 100.0 8.6E-27 1.9E-31 237.2 23.3 218 89-324 50-349 (521)
65 PRK12352 putative carbamate ki 99.9 3.2E-26 6.9E-31 219.6 24.2 226 91-323 3-315 (316)
66 TIGR01890 N-Ac-Glu-synth amino 99.9 1.1E-26 2.3E-31 232.2 21.7 221 89-325 16-281 (429)
67 TIGR02078 AspKin_pair Pyrococc 99.9 1.2E-26 2.6E-31 223.6 20.5 209 92-325 1-272 (327)
68 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.9 2.3E-26 5.1E-31 217.9 22.1 217 89-321 17-280 (280)
69 PRK12686 carbamate kinase; Rev 99.9 2.1E-26 4.5E-31 220.0 21.7 226 90-322 2-311 (312)
70 PRK09466 metL bifunctional asp 99.9 1.9E-26 4.1E-31 245.0 21.4 217 89-323 9-300 (810)
71 cd04236 AAK_NAGS-Urea AAK_NAGS 99.9 3.3E-26 7.1E-31 215.4 19.4 209 89-321 34-271 (271)
72 TIGR00761 argB acetylglutamate 99.9 2E-26 4.3E-31 212.3 16.8 193 92-299 1-231 (231)
73 PRK05279 N-acetylglutamate syn 99.9 1.5E-25 3.2E-30 224.8 22.3 220 89-324 24-292 (441)
74 PRK08961 bifunctional aspartat 99.9 6.8E-26 1.5E-30 243.5 20.1 220 89-324 6-306 (861)
75 cd04252 AAK_NAGK-fArgBP AAK_NA 99.9 1.5E-25 3.2E-30 209.0 19.1 209 94-321 2-248 (248)
76 PRK09436 thrA bifunctional asp 99.9 3.4E-25 7.3E-30 236.5 21.0 216 92-324 1-298 (819)
77 PRK12354 carbamate kinase; Rev 99.9 4.8E-24 1E-28 203.0 23.0 225 92-324 2-301 (307)
78 PRK09411 carbamate kinase; Rev 99.9 5.7E-23 1.2E-27 194.3 22.3 226 90-322 1-296 (297)
79 PRK04531 acetylglutamate kinas 99.9 1.3E-22 2.7E-27 200.6 21.2 195 89-326 35-252 (398)
80 PLN02825 amino-acid N-acetyltr 99.9 2.6E-22 5.7E-27 203.5 23.2 223 89-326 16-367 (515)
81 KOG0456 Aspartate kinase [Amin 99.9 1.1E-22 2.5E-27 194.8 15.2 162 156-326 190-378 (559)
82 PRK09181 aspartate kinase; Val 99.9 1.1E-21 2.4E-26 197.9 17.6 156 159-324 140-312 (475)
83 COG0549 ArcC Carbamate kinase 99.9 2.6E-20 5.6E-25 173.1 21.1 227 91-323 1-312 (312)
84 cd04248 AAK_AK-Ectoine AAK_AK- 99.9 4.5E-21 9.8E-26 182.1 15.5 155 158-322 133-304 (304)
85 COG2054 Uncharacterized archae 99.8 1.9E-19 4.2E-24 157.3 17.9 197 94-323 3-210 (212)
86 KOG2436 Acetylglutamate kinase 98.6 4.6E-07 9.9E-12 90.7 12.0 168 90-273 95-297 (520)
87 TIGR02726 phenyl_P_delta pheny 73.5 10 0.00023 33.3 6.2 69 244-322 9-78 (169)
88 COG1778 Low specificity phosph 70.2 5.3 0.00011 35.2 3.5 56 244-310 10-67 (170)
89 TIGR01670 YrbI-phosphatas 3-de 53.7 35 0.00076 29.0 5.7 60 244-313 3-63 (154)
90 TIGR01689 EcbF-BcbF capsule bi 53.2 27 0.00058 29.4 4.7 47 90-137 1-48 (126)
91 PF00994 MoCF_biosynth: Probab 45.2 1.5E+02 0.0032 24.7 8.2 67 169-240 18-84 (144)
92 PRK03669 mannosyl-3-phosphogly 44.2 46 0.001 30.9 5.3 54 241-313 6-59 (271)
93 PF03437 BtpA: BtpA family; I 44.0 42 0.00091 31.7 5.0 40 284-325 192-234 (254)
94 COG1058 CinA Predicted nucleot 39.2 1.7E+02 0.0038 27.6 8.3 68 169-241 22-89 (255)
95 PTZ00174 phosphomannomutase; P 38.3 74 0.0016 29.2 5.7 43 89-137 4-46 (247)
96 PRK10187 trehalose-6-phosphate 37.3 84 0.0018 29.4 6.0 58 242-313 14-72 (266)
97 PRK09181 aspartate kinase; Val 37.0 29 0.00063 35.7 3.0 12 92-103 4-15 (475)
98 TIGR01684 viral_ppase viral ph 34.6 1.1E+02 0.0023 29.7 6.2 52 87-141 123-174 (301)
99 PRK10513 sugar phosphate phosp 33.7 85 0.0018 28.8 5.3 43 90-138 3-45 (270)
100 PRK14501 putative bifunctional 33.7 1.7E+02 0.0036 31.7 8.2 81 229-323 479-566 (726)
101 PRK10530 pyridoxal phosphate ( 33.2 98 0.0021 28.2 5.6 43 90-138 3-45 (272)
102 cd00885 cinA Competence-damage 33.1 2.7E+02 0.0058 24.3 8.1 68 169-241 20-87 (170)
103 PTZ00174 phosphomannomutase; P 33.0 90 0.002 28.6 5.3 51 244-313 7-57 (247)
104 PLN03017 trehalose-phosphatase 32.7 1.5E+02 0.0032 29.6 7.0 63 232-313 101-167 (366)
105 PRK10530 pyridoxal phosphate ( 31.3 1.2E+02 0.0026 27.7 5.9 50 244-312 5-54 (272)
106 PRK01158 phosphoglycolate phos 30.5 1.1E+02 0.0024 27.1 5.4 43 90-138 3-45 (230)
107 PRK03673 hypothetical protein; 30.5 2.6E+02 0.0057 28.1 8.5 68 169-241 22-89 (396)
108 PRK01215 competence damage-ind 30.2 2.9E+02 0.0063 26.0 8.4 68 169-241 24-91 (264)
109 TIGR02463 MPGP_rel mannosyl-3- 30.2 87 0.0019 27.8 4.6 39 285-323 23-70 (221)
110 PRK15126 thiamin pyrimidine py 30.2 1.1E+02 0.0024 28.2 5.5 41 91-137 3-43 (272)
111 PRK10976 putative hydrolase; P 30.0 1.1E+02 0.0024 28.0 5.4 42 91-138 3-44 (266)
112 TIGR01486 HAD-SF-IIB-MPGP mann 29.7 87 0.0019 28.7 4.7 61 244-323 1-69 (256)
113 PRK10976 putative hydrolase; P 29.3 1.1E+02 0.0024 28.0 5.3 50 244-312 4-53 (266)
114 smart00852 MoCF_biosynth Proba 29.3 2.8E+02 0.0061 22.7 7.3 67 170-241 20-86 (135)
115 TIGR01487 SPP-like sucrose-pho 29.0 1.1E+02 0.0024 27.1 5.1 49 244-311 3-51 (215)
116 TIGR00177 molyb_syn molybdenum 28.7 3.5E+02 0.0076 22.6 8.1 65 169-238 28-92 (144)
117 PF10686 DUF2493: Protein of u 28.6 1.6E+02 0.0035 22.1 5.1 38 92-139 4-41 (71)
118 PRK08258 enoyl-CoA hydratase; 28.4 2.5E+02 0.0055 26.3 7.6 33 108-140 39-72 (277)
119 PRK09484 3-deoxy-D-manno-octul 28.3 1E+02 0.0022 27.0 4.6 61 243-313 22-83 (183)
120 TIGR01482 SPP-subfamily Sucros 28.2 99 0.0021 27.3 4.6 28 285-312 22-49 (225)
121 TIGR02461 osmo_MPG_phos mannos 28.0 90 0.0019 28.4 4.4 29 284-312 21-49 (225)
122 PRK01158 phosphoglycolate phos 27.8 1.3E+02 0.0029 26.6 5.4 49 244-311 5-53 (230)
123 PRK05265 pyridoxine 5'-phospha 27.4 2.6E+02 0.0056 26.2 7.2 71 223-311 131-201 (239)
124 COG1058 CinA Predicted nucleot 27.0 46 0.00099 31.5 2.2 29 115-144 47-76 (255)
125 PHA03398 viral phosphatase sup 26.5 1.5E+02 0.0032 28.9 5.6 48 88-138 126-173 (303)
126 PRK15126 thiamin pyrimidine py 26.5 1.4E+02 0.003 27.5 5.5 51 244-313 4-54 (272)
127 PLN02151 trehalose-phosphatase 25.8 1.6E+02 0.0036 29.1 6.0 66 233-313 89-154 (354)
128 PRK10513 sugar phosphate phosp 25.1 1.4E+02 0.003 27.3 5.2 50 244-312 5-54 (270)
129 PF08282 Hydrolase_3: haloacid 24.8 1.6E+02 0.0035 25.8 5.4 30 284-313 21-50 (254)
130 TIGR00099 Cof-subfamily Cof su 24.5 1.9E+02 0.004 26.3 5.9 50 244-312 1-50 (256)
131 TIGR01487 SPP-like sucrose-pho 24.2 1.8E+02 0.0038 25.7 5.5 41 91-137 2-42 (215)
132 cd04248 AAK_AK-Ectoine AAK_AK- 23.8 2E+02 0.0044 27.9 6.0 12 93-104 2-13 (304)
133 PRK03670 competence damage-ind 23.6 3.5E+02 0.0076 25.4 7.5 68 169-241 21-89 (252)
134 TIGR01457 HAD-SF-IIA-hyp2 HAD- 22.5 1.5E+02 0.0033 27.2 4.9 13 244-256 3-15 (249)
135 KOG1342 Histone deacetylase co 22.4 1.5E+02 0.0032 29.9 4.8 53 89-144 252-306 (425)
136 COG2044 Predicted peroxiredoxi 22.4 2.5E+02 0.0055 23.5 5.6 62 227-301 21-82 (120)
137 TIGR00559 pdxJ pyridoxine 5'-p 22.1 2.1E+02 0.0045 26.9 5.5 74 223-313 128-201 (237)
138 cd00003 PNPsynthase Pyridoxine 22.1 2E+02 0.0043 26.9 5.4 74 223-313 128-201 (234)
139 smart00463 SMR Small MutS-rela 22.0 1.7E+02 0.0037 21.7 4.3 29 112-140 12-42 (80)
140 PF11305 DUF3107: Protein of u 21.8 1.1E+02 0.0024 23.4 3.1 27 225-251 20-47 (74)
141 COG0560 SerB Phosphoserine pho 21.3 1.6E+02 0.0035 26.7 4.7 21 121-141 85-105 (212)
142 PF01872 RibD_C: RibD C-termin 20.7 1.2E+02 0.0027 26.6 3.7 27 118-144 123-149 (200)
143 PLN02887 hydrolase family prot 20.6 2.4E+02 0.0052 29.9 6.3 67 244-329 310-393 (580)
144 cd00758 MoCF_BD MoCF_BD: molyb 20.0 4.9E+02 0.011 21.3 7.6 65 169-238 20-84 (133)
145 TIGR00200 cinA_nterm competenc 20.0 5.2E+02 0.011 26.1 8.4 68 169-241 21-88 (413)
No 1
>PRK00358 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=1e-42 Score=320.55 Aligned_cols=231 Identities=64% Similarity=1.032 Sum_probs=202.5
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHHHHH
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA 170 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~~n~ 170 (334)
+++||||||++|+++++++++.+.+++++++|+++++.|+++|||||||++++++... ..+++....+.++++++++|+
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 79 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGA-AAGMDRATADYMGMLATVMNA 79 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHh-hcCCChhhHHHHHHHHHHHHH
Confidence 4799999999999765567899999999999999999999999999999998876432 245555566788999999999
Q ss_pred HHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEeecCC
Q 019877 171 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 250 (334)
Q Consensus 171 ~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilTDVd 250 (334)
.+++.+|.++|+++..+++........++..+.+.++|++|.|||++++.+.+++++|++|+++|.+++||+|+++||||
T Consensus 80 ~ll~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVd 159 (231)
T PRK00358 80 LALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVD 159 (231)
T ss_pred HHHHHHHHHcCCCeEEechhhcccccCcccHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcC
Confidence 88888899999999866665443333344456677899999999999887888899999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 251 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 251 GVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
|||++||+.+|+|++|++|+++|+.+.|.+.+|+++++.|.+.|++++|+|+.+|++|.++++|+.+||+|.
T Consensus 160 GVy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 160 GVYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231 (231)
T ss_pred ceEcCCCCCCCCCEEeeEecHHHHHHcCCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence 999999999999999999999998777778899999999999999999999999999999999999999984
No 2
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.6e-42 Score=314.41 Aligned_cols=233 Identities=60% Similarity=0.968 Sum_probs=220.1
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 168 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~~ 168 (334)
+++++|+||||++|..+++..++.+.+.+++++|+++.+.|.+|.||.|||.++|++..+. .|+++...|+++++++++
T Consensus 4 ~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~-~g~~r~~~D~mGmlaTvm 82 (238)
T COG0528 4 KYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAA-AGMDRVTADYMGMLATVM 82 (238)
T ss_pred ceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHH-cCCchhhhhHHHHHHHHH
Confidence 6789999999999998776789999999999999999999999999999999999976655 489999999999999999
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEeec
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 248 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilTD 248 (334)
|+.+++.+|...|++++.+++..+..+.++|..++..++|+.|.|+|+.++++.|+.++|+.|+++|.+++||.|+..|+
T Consensus 83 Nal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~atn 162 (238)
T COG0528 83 NALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATN 162 (238)
T ss_pred HHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEecc
Confidence 99999999999999999999888776677888888899999999999999999999999999999999999999999995
Q ss_pred -CCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 249 -VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 249 -VdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
|||||++||+++|+|+++++|+|.|+.+.+..+|++.|+..|.++++|++|+|.++++++.+++.|+..||.|.
T Consensus 163 ~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~ 237 (238)
T COG0528 163 KVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVE 237 (238)
T ss_pred CCCceeCCCCCCCCCceecccCCHHHHHHhcCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEec
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999986
No 3
>PRK14556 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=1.4e-42 Score=321.35 Aligned_cols=236 Identities=42% Similarity=0.678 Sum_probs=216.1
Q ss_pred CCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHH
Q 019877 88 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATV 167 (334)
Q Consensus 88 ~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~ 167 (334)
.++++||+|++|++|..++...++.+.+.+++++|+++.+.|+++.||.|||.++|+.......++++...|+++|++++
T Consensus 13 ~~~~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~ 92 (249)
T PRK14556 13 PKLKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATM 92 (249)
T ss_pred hhhCEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHH
Confidence 36899999999999998766679999999999999999999999999999999999843221136888889999999999
Q ss_pred HHHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEee
Q 019877 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 247 (334)
Q Consensus 168 ~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilT 247 (334)
+|+.+++.+|.+.|++++.+++.......++|..+++.++|+.|.|+|+.++.|.++++||++|+++|.+++||.|+++|
T Consensus 93 iNal~l~~~l~~~~~~~~v~sa~~~~~~~e~~~~~~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~T 172 (249)
T PRK14556 93 INALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKAT 172 (249)
T ss_pred HHHHHHHHHHHHcCCCeEEeeccccCcCCCCCCHHHHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999998877666778777888999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEec
Q 019877 248 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 323 (334)
Q Consensus 248 DVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~ 323 (334)
||||||++||+.+|+|+++++|++.|+.+.+..+++..|++.|.++|++++|+|+++|++|.+++.|+.+||+|..
T Consensus 173 dVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 173 TVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL 248 (249)
T ss_pred CCCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence 9999999999999999999999999887667778999999999999999999999999999999999999999964
No 4
>PRK14558 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=2.7e-42 Score=318.14 Aligned_cols=229 Identities=43% Similarity=0.738 Sum_probs=199.9
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHHHHH
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA 170 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~~n~ 170 (334)
+++|||+|||+|++++.++++.+.+++++++|+++++.|+++|||||||++++++... ++.....|.+++.++++|.
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~~---~~~~~~~d~ig~~~~~ln~ 77 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELK---ELSPTRADQIGMLGTVINA 77 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhcc---CCChHHHHHHHHHHHHHHH
Confidence 5799999999999886667999999999999999999999999999999998875532 3555566778888899998
Q ss_pred HHHHHHHHHcCCCeeEEeceecc-ccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEeecC
Q 019877 171 IFLQATMESIGIPTRVQTAFRMS-EVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 249 (334)
Q Consensus 171 ~Lv~~~L~~~Gi~a~~l~~~~~~-~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilTDV 249 (334)
.++..+|.++|+++..+..+... ++ .++....+..+|+.|.|||++|+.|.+++++|++|+++|.+++||+|++||||
T Consensus 78 ~~~~~~l~~~gi~a~~~~~~~~~~~~-~~~~~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdV 156 (231)
T PRK14558 78 LYLKDIFEKSGLKAVIVSQIVNLPSV-EPINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKV 156 (231)
T ss_pred HHHHHHHHHcCCCeEEeccccccchh-hhhhHHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecC
Confidence 87777899999998766543211 11 11223456789999999999999889999999999999999999999999999
Q ss_pred CccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEec
Q 019877 250 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 323 (334)
Q Consensus 250 dGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~ 323 (334)
||||++||+.+|+|++|++|++.|+.+++..++|+.|++.|.+.|++++|+|+++|+++.+++.|+.+||+|.+
T Consensus 157 dGvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 230 (231)
T PRK14558 157 DGIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP 230 (231)
T ss_pred CeeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999975
No 5
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=100.00 E-value=6.3e-41 Score=309.49 Aligned_cols=232 Identities=56% Similarity=0.960 Sum_probs=203.8
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHHHH
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMN 169 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~~n 169 (334)
++++||||||++|+++++.+++.+.+++++++|+++...|+++|||||||+++.++. ++.+++.....|+.+++++++|
T Consensus 1 ~~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~-a~~~~~~~~~~d~~g~~~~~l~ 79 (233)
T TIGR02075 1 YKRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVS-AKELGIDRVTADYMGMLATVIN 79 (233)
T ss_pred CCEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHH-HHhcCCCCccHHHHHHHHHHHH
Confidence 368999999999998545678999999999999999888899999999999887765 4445555555688899999999
Q ss_pred HHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEeec-
Q 019877 170 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN- 248 (334)
Q Consensus 170 ~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilTD- 248 (334)
.+++..+|.++|+++..+++++.......|..+.+.++|++|.|||++++.|.++++||.+|+++|..++||+|+++||
T Consensus 80 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~ 159 (233)
T TIGR02075 80 GLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNG 159 (233)
T ss_pred HHHHHHHHHhCCCCcEEeccccCCCCccccCHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecc
Confidence 9998888999999999888776542223343456678999999999999888899999999999999999999999999
Q ss_pred CCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 249 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 249 VdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
|||||++||+.+|++++|++++++|+.+.+...+|+++++.|.+.|++++|+|+.+|++|.++++|+.+||+|.
T Consensus 160 VdGvy~~dp~~~~~a~~i~~i~~~e~~~~~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 160 VDGVYTADPKKNKDAKKYETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred cCeEEcCCCCCCCCCeECcEecHHHHHhcCHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 99999999999999999999999998777777889999999999999999999999999999999999999984
No 6
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=100.00 E-value=6.7e-41 Score=308.36 Aligned_cols=229 Identities=62% Similarity=0.989 Sum_probs=199.1
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHHHHHH
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAI 171 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~~n~~ 171 (334)
++||||||+++++++. .++.+.+++++++|+++++.|+++|||||||+++++.... .+++.+...++++++++++|+.
T Consensus 1 ~iViKiGGs~l~~~~~-~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 78 (229)
T cd04239 1 RIVLKLSGEALAGEGG-GIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAA-ARGMPRATADYIGMLATVMNAL 78 (229)
T ss_pred CEEEEECcceecCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHh-hcCCChhhHHHHHHHHHHHHHH
Confidence 5899999999998743 7889999999999999999999999999999987664432 2345555578889999999999
Q ss_pred HHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEeecCCc
Q 019877 172 FLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDG 251 (334)
Q Consensus 172 Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilTDVdG 251 (334)
+++.+|.++|+++..+++.++......+..+.+..+++.|.|||++|+.|.+++++|++|+++|.+++||+|+++|||||
T Consensus 79 l~~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdG 158 (229)
T cd04239 79 ALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDG 158 (229)
T ss_pred HHHHHHHHcCCCEEEeCHHHHhhhhccccHHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCc
Confidence 99888999999998777765433222222344678999999999999989999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 252 VYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 252 Vyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
||++||+.+|++++|++|+++|+.++..+.+|+.+++.+.+.|++++|+|+++|+++.++++|+..||+|.
T Consensus 159 vy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 229 (229)
T cd04239 159 VYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229 (229)
T ss_pred ccCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence 99999999999999999999998876667889999999999999999999999999999999998999984
No 7
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=100.00 E-value=1.1e-40 Score=307.40 Aligned_cols=231 Identities=68% Similarity=1.075 Sum_probs=199.2
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHHHHH
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA 170 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~~n~ 170 (334)
+++||||||+++++|++.+++.+.+++++++|+++.+.|+++|||||||+++++.. ...++......|+++++++++|+
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~-~~~~~~~~~~~d~~g~~~~~~n~ 79 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGAS-AAEAGMDRATADYMGMLATVINA 79 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccch-hhhcCCCchhhhHHHHHHHHHHH
Confidence 57999999999999877789999999999999999888899999999999865522 22344444445778889999999
Q ss_pred HHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEeecCC
Q 019877 171 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 250 (334)
Q Consensus 171 ~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilTDVd 250 (334)
.++..+|.++|+++..+++.+.......+..+.+.++|+.|.|||++++.|.+.+++|++|+++|.+++||+|+++||||
T Consensus 80 ~ll~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVd 159 (231)
T cd04254 80 LALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVD 159 (231)
T ss_pred HHHHHHHHHcCCCeEEEcHHHhhhhhcccCHHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCC
Confidence 88888899999999888776542221111124567899999999999888888999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 251 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 251 GVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
|||++||+.+|+++++++++++|+.+.+...+|+++++.|.+.|++++|+|+.+|++|.++++|+.+||+|.
T Consensus 160 Gvy~~dp~~~~~a~~i~~i~~~~~~~~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T cd04254 160 GVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231)
T ss_pred EEEecCCCCCCCcEEeeEecHHHHHhcchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence 999999999999999999999998777778899999999999999999999999999999999999999984
No 8
>PRK14557 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=5.5e-40 Score=305.53 Aligned_cols=241 Identities=43% Similarity=0.726 Sum_probs=205.0
Q ss_pred CCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHH
Q 019877 88 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATV 167 (334)
Q Consensus 88 ~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~ 167 (334)
.+++++||||||++|.+++...++.+.+++++++|+.+.+.|++++||||||.+++++ .++..++++...|.+++++++
T Consensus 2 ~~~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~-~a~~~~~~~~~~D~ig~~g~~ 80 (247)
T PRK14557 2 RPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGH-LAEEWGIDRVEADNIGTLGTI 80 (247)
T ss_pred CcccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHH-HHHhcCCChHHHHHHHHHHHH
Confidence 3688999999999998876567889999999999999999999999999999887654 344456666677999999999
Q ss_pred HHHHHHHHHHHHc-CCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEe
Q 019877 168 MNAIFLQATMESI-GIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKA 246 (334)
Q Consensus 168 ~n~~Lv~~~L~~~-Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~Liil 246 (334)
+|+.+++.+|+.. +..+..++........+++...++.+.|+.|.|||+.|+.|.+++++|++|+++|.+++||.|+++
T Consensus 81 lna~ll~~~l~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~ 160 (247)
T PRK14557 81 INSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVA 160 (247)
T ss_pred HHHHHHHHHHHhhhCCceeEEeccccccccchhhHHHHHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEe
Confidence 9999999888874 666544444333222233434456777999999999999899999999999999999999999999
Q ss_pred -ecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecCC
Q 019877 247 -TNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 325 (334)
Q Consensus 247 -TDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~~ 325 (334)
|||||||++||+.+|+|++|++|++.|+...+..+++..|++.|.+.|++++|+|+++|+.|.++++|+.+||+|.+.+
T Consensus 161 ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~ 240 (247)
T PRK14557 161 KQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDA 240 (247)
T ss_pred cCCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCc
Confidence 5999999999999999999999999887555566788899999999999999999999999999999999999999877
Q ss_pred CCCc
Q 019877 326 NSTV 329 (334)
Q Consensus 326 ~~~~ 329 (334)
+.-+
T Consensus 241 ~~~~ 244 (247)
T PRK14557 241 SLLV 244 (247)
T ss_pred cccc
Confidence 6544
No 9
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-39 Score=305.53 Aligned_cols=233 Identities=25% Similarity=0.381 Sum_probs=198.4
Q ss_pred CCCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChH--HHHHHH
Q 019877 87 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSA--DYIGML 164 (334)
Q Consensus 87 ~~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~--d~~~~l 164 (334)
..+++++|||+|.++|+++ ++.++..++..++++|++|++.|++||||+ +|+++.|...++ ++.++. ...|++
T Consensus 3 ~~~~~riVvKiGSs~Lt~~-~g~l~~~~l~~l~~~ia~L~~~G~eVilVS-SGAiaaG~~~Lg---~~~rp~~l~~kQA~ 77 (369)
T COG0263 3 LSSARRIVVKIGSSSLTDG-TGGLDRSKLEELVRQVAALHKAGHEVVLVS-SGAIAAGRTRLG---LPKRPKTLAEKQAA 77 (369)
T ss_pred CCcceEEEEEECcceeeCC-CCCcCHHHHHHHHHHHHHHHhCCCEEEEEc-cchhhhChhhcC---CCCCCcchHHHHHH
Confidence 4578999999999999986 678999999999999999999999999998 577776766654 444443 457899
Q ss_pred HHHHHHHHHHHH---HHHcCCCeeEEeceeccccc--hhHHHH--HHHHHHhCCCEEEEeCC-----CCCcccChHHHHH
Q 019877 165 ATVMNAIFLQAT---MESIGIPTRVQTAFRMSEVA--EPYIRR--RAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAA 232 (334)
Q Consensus 165 a~~~n~~Lv~~~---L~~~Gi~a~~l~~~~~~~~~--~~~i~~--~i~~lL~~G~IPVi~g~-----~g~~~~~sD~lAa 232 (334)
++++|.+||+.| |..+|+... |.+++..|+. ++|.|. .+..||+.|.|||||++ .|+.|+|||++|+
T Consensus 78 AAVGQ~~Lm~~y~~~f~~~g~~v~-QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPIINENDtva~~EikfGDND~LsA 156 (369)
T COG0263 78 AAVGQVRLMQLYEELFARYGIKVG-QILLTRDDFSDRRRYLNARNTLSALLELGVVPIINENDTVATEEIKFGDNDTLSA 156 (369)
T ss_pred HHhCHHHHHHHHHHHHHhcCCeee-EEEeehhhhhhHHHHHHHHHHHHHHHHCCceeeecCCCceeeeeeeecCCchHHH
Confidence 999999998876 888999874 7777766664 357763 46789999999999985 4788999999999
Q ss_pred HHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHH--HHhhC----------CCCcchHHHHHHHHhCCCcEEEE
Q 019877 233 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ--EVTSK----------DLSVMDMTAITLCQENNIPVVVF 300 (334)
Q Consensus 233 ~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~--e~~~~----------g~~v~k~~Aa~~a~~~Gi~V~I~ 300 (334)
++|..++||.|+++||+||+||+||+.+|+|++|++++-. |+... |.|.+|+.|++.|.++|++++|+
T Consensus 157 ~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~ 236 (369)
T COG0263 157 LVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIA 236 (369)
T ss_pred HHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEe
Confidence 9999999999999999999999999999999999887622 33321 34778999999999999999999
Q ss_pred cCCChhHHHHHHcCCCCceEEecCC
Q 019877 301 NLNQPGNIAKAIQGERVGTLIGGTW 325 (334)
Q Consensus 301 ng~~~~~l~~~l~g~~~GT~I~~~~ 325 (334)
+|.+|+.+.+++.++..||+|.+..
T Consensus 237 ~g~~~~~i~~~~~~~~~GT~F~~~~ 261 (369)
T COG0263 237 SGSKPDVILDALEGEAVGTLFEPQA 261 (369)
T ss_pred cCCCcchHHHHHhCCCCccEEecCC
Confidence 9999999999999999999999644
No 10
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=5.8e-37 Score=288.39 Aligned_cols=232 Identities=23% Similarity=0.299 Sum_probs=181.5
Q ss_pred CCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE-ECCchHHHHHHHcccCCCCCChHHHHHHHHH
Q 019877 88 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV-VGGGNIFRGASAAGNSGLDRSSADYIGMLAT 166 (334)
Q Consensus 88 ~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlV-hGgG~~~~g~~~~~~~gl~~~~~d~~~~la~ 166 (334)
.+++++||||||++|++++ +.++.+.+++++++|+++++.|+++||| ||+|++ ++..++....+.. ....+++++
T Consensus 7 ~~~~~iViK~Ggs~l~~~~-~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~--g~~~l~~~~~~~~-~~~~~a~aa 82 (266)
T PRK12314 7 ENAKRIVIKVGSSTLSYEN-GKINLERIEQLVFVISDLMNKGKEVILVSSGAIGA--GLTKLKLDKRPTS-LAEKQALAA 82 (266)
T ss_pred hhCCEEEEEeCCCeeeCCC-CCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccc--cceeeccccCCCC-HHHHHHHHH
Confidence 4578999999999999754 5789999999999999999999999887 666766 4444443332222 223466666
Q ss_pred HHHHHH---HHHHHHHcCCCeeEEeceeccccchh--HHH--HHHHHHHhCCCEEEEeCC-----CCC--cccChHHHHH
Q 019877 167 VMNAIF---LQATMESIGIPTRVQTAFRMSEVAEP--YIR--RRAVRHLEKGRVVIFAAG-----TGN--PFFTTDTAAA 232 (334)
Q Consensus 167 ~~n~~L---v~~~L~~~Gi~a~~l~~~~~~~~~~~--~i~--~~i~~lL~~G~IPVi~g~-----~g~--~~~~sD~lAa 232 (334)
.+|..+ ++.+|+++|+++. |...+..++..+ +.+ ..+.++|+.|+|||+++. .+. .+++||++|+
T Consensus 83 ~Gq~~l~~~~~~~~~~~g~~~~-q~llT~~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa 161 (266)
T PRK12314 83 VGQPELMSLYSKFFAEYGIVVA-QILLTRDDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSA 161 (266)
T ss_pred HhHHHHHHHHHHHHHHcCCeEE-EEEEecccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHH
Confidence 666554 5556899999874 434444444322 322 346789999999999963 232 3889999999
Q ss_pred HHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccH--HHHhhC----------CCCcchHHHHHHHHhCCCcEEEE
Q 019877 233 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTSK----------DLSVMDMTAITLCQENNIPVVVF 300 (334)
Q Consensus 233 ~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~--~e~~~~----------g~~v~k~~Aa~~a~~~Gi~V~I~ 300 (334)
++|.+++||+|+|+|||||||++||+.+|+|++|++|++ .+..+. |.|++|++|+..|.+.|++++|+
T Consensus 162 ~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~ 241 (266)
T PRK12314 162 IVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLA 241 (266)
T ss_pred HHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEE
Confidence 999999999999999999999999999999999999875 333221 35788999999999999999999
Q ss_pred cCCChhHHHHHHcCCCCceEEecC
Q 019877 301 NLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 301 ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
||++|+.|.++++|+.+||+|.+.
T Consensus 242 ~g~~~~~i~~~l~g~~~GT~i~~~ 265 (266)
T PRK12314 242 NGFNPSDILDFLEGESIGTLFAPK 265 (266)
T ss_pred cCCCchHHHHHHcCCCCceEEccC
Confidence 999999999999999999999763
No 11
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=100.00 E-value=1.8e-36 Score=287.29 Aligned_cols=231 Identities=19% Similarity=0.210 Sum_probs=183.5
Q ss_pred CCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEE-EEECCchHHHHHHHcccCCC-------------
Q 019877 88 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVA-IVVGGGNIFRGASAAGNSGL------------- 153 (334)
Q Consensus 88 ~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vV-lVhGgG~~~~g~~~~~~~gl------------- 153 (334)
.+.+++|||+||++|++++++.++.+++..++++|+.|++.|+++| |+||++++ |+..++.++.
T Consensus 6 ~~~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~--G~~~l~~~~~~~~~~~~~~~g~~ 83 (284)
T cd04256 6 KHAKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAF--GKQRLRHEILLSSSMRQTLKSGQ 83 (284)
T ss_pred ccCCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHh--ChHHhhhccccccchhhhccccc
Confidence 3578999999999999875447999999999999999999999999 55555666 5555554321
Q ss_pred --C-CChHHHHHHHHHHHHHHHHHHH---HHHcCCCeeEEeceeccccchh--HHH--HHHHHHHhCCCEEEEeCCC---
Q 019877 154 --D-RSSADYIGMLATVMNAIFLQAT---MESIGIPTRVQTAFRMSEVAEP--YIR--RRAVRHLEKGRVVIFAAGT--- 220 (334)
Q Consensus 154 --~-~~~~d~~~~la~~~n~~Lv~~~---L~~~Gi~a~~l~~~~~~~~~~~--~i~--~~i~~lL~~G~IPVi~g~~--- 220 (334)
. +......+++++.+|..|++.| |..+|+++. +..++..++.++ +.+ ..+..+|+.|+|||+++++
T Consensus 84 ~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~~-q~llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~ 162 (284)
T cd04256 84 LKDMPQMELDGRACAAVGQSGLMALYEAMFTQYGITVA-QVLVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVS 162 (284)
T ss_pred ccCCcchhHHHHHHHHcccHHHHHHHHHHHHHcCCcHH-HeeeeccccccHHHHHHHHHHHHHHHHCCCEEEEeCCCccc
Confidence 0 1112235789999999887764 888999885 334444444332 322 3467899999999999621
Q ss_pred --------C---CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC----------CC
Q 019877 221 --------G---NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----------DL 279 (334)
Q Consensus 221 --------g---~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~----------g~ 279 (334)
+ +.++|||++|+++|.+++||+|+++|||||||++||+ +|++++|++++..+..+. |.
T Consensus 163 ~~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGG 241 (284)
T cd04256 163 PPPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGG 241 (284)
T ss_pred ccccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCC
Confidence 1 2468999999999999999999999999999999996 699999999987665421 44
Q ss_pred CcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 280 SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 280 ~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
|..|++|+..|.+.|++++|+||.+|+.|.++++|+.+||+|.
T Consensus 242 M~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~~ 284 (284)
T cd04256 242 MEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT 284 (284)
T ss_pred cHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEeC
Confidence 6779999999999999999999999999999999999999983
No 12
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=2.3e-36 Score=295.42 Aligned_cols=234 Identities=21% Similarity=0.324 Sum_probs=186.4
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 168 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~~ 168 (334)
+++++||||||++|++. .+.++.+++..++++|+.+++.|+++||||||| .+.|...++... ..+ ....++++..+
T Consensus 4 ~~kriVIKiGgs~L~~~-~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGa-va~G~~~l~~~~-~~~-~~~~qalaavG 79 (368)
T PRK13402 4 NWKRIVVKVGSSLLTPH-HQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGA-VAAGYHKLGFID-RPS-VPEKQAMAAAG 79 (368)
T ss_pred CCcEEEEEEchhhccCC-CCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCh-hhcCccccCCCC-CCC-ccHHHHHHHhh
Confidence 57899999999999974 457999999999999999999999999999876 333433333211 112 22357777777
Q ss_pred HHHHHH---HHHHHcCCCeeEEeceeccccc--hhHH--HHHHHHHHhCCCEEEEeCC-----CCCcccChHHHHHHHHH
Q 019877 169 NAIFLQ---ATMESIGIPTRVQTAFRMSEVA--EPYI--RRRAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCA 236 (334)
Q Consensus 169 n~~Lv~---~~L~~~Gi~a~~l~~~~~~~~~--~~~i--~~~i~~lL~~G~IPVi~g~-----~g~~~~~sD~lAa~lA~ 236 (334)
|..++. .+|.++|+++..+ ..+..++. +.|. +..+..+|+.|.|||++++ .|+.|+|||++|+++|.
T Consensus 80 q~~l~~~~~~~f~~~g~~~aqv-LlT~~d~~~~~~y~n~~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~ 158 (368)
T PRK13402 80 QGLLMATWSKLFLSHGFPAAQL-LLTHGDLRDRERYINIRNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAA 158 (368)
T ss_pred HHHHHHHHHHHHHHCCCeEEEE-EEecchhhhHHHHHHHHHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHH
Confidence 776644 4589999998633 33434442 2354 3456789999999999963 35778999999999999
Q ss_pred HcCCcEEEEeecCCccccCCCCCCCCCcccccccH--HHHhhC----------CCCcchHHHHHHHHhCCCcEEEEcCCC
Q 019877 237 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTSK----------DLSVMDMTAITLCQENNIPVVVFNLNQ 304 (334)
Q Consensus 237 ~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~--~e~~~~----------g~~v~k~~Aa~~a~~~Gi~V~I~ng~~ 304 (334)
+++||.|+|+|||||||++||+.+|++++|++|++ +++.++ |.|.+|++|+..|.++|++++|+|+.+
T Consensus 159 ~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~ 238 (368)
T PRK13402 159 LADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFT 238 (368)
T ss_pred HhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCC
Confidence 99999999999999999999999999999999986 454331 346789999999999999999999999
Q ss_pred hhHHHHHHcCCCCceEEecCCCC
Q 019877 305 PGNIAKAIQGERVGTLIGGTWNS 327 (334)
Q Consensus 305 ~~~l~~~l~g~~~GT~I~~~~~~ 327 (334)
|+.|.++++|+.+||+|.+..++
T Consensus 239 ~~~l~~~l~g~~~GT~i~~~~~~ 261 (368)
T PRK13402 239 ADIFNQLLKGQNPGTYFTPEEKP 261 (368)
T ss_pred chHHHHHhcCCCCceEEecCCCC
Confidence 99999999999999999875443
No 13
>PTZ00489 glutamate 5-kinase; Provisional
Probab=100.00 E-value=8.2e-36 Score=279.87 Aligned_cols=229 Identities=18% Similarity=0.260 Sum_probs=183.5
Q ss_pred CCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHH
Q 019877 88 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATV 167 (334)
Q Consensus 88 ~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~ 167 (334)
.+++++|||+|||+|++++ .++..++..++++++++++ ++++||||| |+++.|+..+ ++........+++++.
T Consensus 6 ~~~~riVIKlG~Svit~~~--~~~~~~~~~l~~~i~~l~~-~~~vilVss-Gava~g~~~~---~~~~~~~~~~qa~aai 78 (264)
T PTZ00489 6 KSVKRIVVKVGSSILVDNQ--EIAAHRIEALCRFIADLQT-KYEVILVTS-GAVAAGYTKK---EMDKSYVPNKQALASM 78 (264)
T ss_pred hcCCEEEEEeccceeeCCC--CcCHHHHHHHHHHHHHHhc-CCeEEEEec-ChHhcChhhc---CCCccccHHHHHHHHh
Confidence 4689999999999999753 5778899999999999986 699999995 5577675543 3333333456889999
Q ss_pred HHHHHHHHH---HHHcCCCeeEEeceeccccc--hhHHH--HHHHHHHhCCCEEEEeCCC-----CCcccChHHHHHHHH
Q 019877 168 MNAIFLQAT---MESIGIPTRVQTAFRMSEVA--EPYIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRC 235 (334)
Q Consensus 168 ~n~~Lv~~~---L~~~Gi~a~~l~~~~~~~~~--~~~i~--~~i~~lL~~G~IPVi~g~~-----g~~~~~sD~lAa~lA 235 (334)
+|.+|+..| |.++|+.+. |.+....++. ..|.+ +.+..+|+.|.|||+++++ +..|+|||.+|+++|
T Consensus 79 Gq~~L~~~y~~~f~~~~~~~a-qiLlt~~d~~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA 157 (264)
T PTZ00489 79 GQPLLMHMYYTELQKHGILCA-QMLLAAYDLDSRKRTINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRLSALVA 157 (264)
T ss_pred CHHHHHHHHHHHHHhCCCeEE-EeeeeccccccchhhHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHH
Confidence 998887654 788999985 4444443332 23443 4467899999999999853 455779999999999
Q ss_pred HHcCCcEEEEeecCCccccCCCCCCCCCcc---cccccHHHHhh-------C--CCCcchHHHHHHHHhCCCcEEEEcCC
Q 019877 236 AEINAEVVLKATNVDGVYDDNPRRNPNARL---LDTLTYQEVTS-------K--DLSVMDMTAITLCQENNIPVVVFNLN 303 (334)
Q Consensus 236 ~~l~Ad~LiilTDVdGVyt~dP~~~p~akl---I~~Is~~e~~~-------~--g~~v~k~~Aa~~a~~~Gi~V~I~ng~ 303 (334)
.+++||+|+|+|||||||++||+.+|+|++ +++++.+++.. . |.|..|++||..|.+.|++++|++|+
T Consensus 158 ~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~ 237 (264)
T PTZ00489 158 HHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGF 237 (264)
T ss_pred HHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 999999999999999999999999999997 77888766521 1 45778999999999999999999999
Q ss_pred ChhHHHHHHcCC--CCceEEecC
Q 019877 304 QPGNIAKAIQGE--RVGTLIGGT 324 (334)
Q Consensus 304 ~~~~l~~~l~g~--~~GT~I~~~ 324 (334)
+|+.|.+++.|+ .+||+|.+.
T Consensus 238 ~~~~i~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 238 HLEKARDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred CchHHHHHHcCCCCCCceEEeec
Confidence 999999999875 479999763
No 14
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=3.1e-35 Score=288.64 Aligned_cols=237 Identities=24% Similarity=0.354 Sum_probs=185.7
Q ss_pred CCCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHH
Q 019877 87 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLAT 166 (334)
Q Consensus 87 ~~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~ 166 (334)
..+++++||||||++|+++ ++.++.+++.+++++|+++++.|+++||||| |+++.+...++....+ ......++++.
T Consensus 5 ~~~~~~iVIKiGGs~l~~~-~~~l~~~~i~~la~~I~~l~~~g~~vViV~s-Gai~~g~~~l~l~~~~-~~~~~~qa~aa 81 (372)
T PRK05429 5 LSDARRIVVKVGSSLLTGG-GGGLDRARIAELARQIAALRAAGHEVVLVSS-GAVAAGRERLGLPERP-KTLAEKQAAAA 81 (372)
T ss_pred hhhCCEEEEEeChhhccCC-CCCcCHHHHHHHHHHHHHHHHCCCeEEEEcc-cHhhhhHhhcCCCCCC-CchHHHHHHHH
Confidence 3467899999999999986 4579999999999999999999999999996 5665554444322111 12223466776
Q ss_pred HHHHHHH---HHHHHHcCCCeeEEeceeccccc--hhHHH--HHHHHHHhCCCEEEEeCC-----CCCcccChHHHHHHH
Q 019877 167 VMNAIFL---QATMESIGIPTRVQTAFRMSEVA--EPYIR--RRAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALR 234 (334)
Q Consensus 167 ~~n~~Lv---~~~L~~~Gi~a~~l~~~~~~~~~--~~~i~--~~i~~lL~~G~IPVi~g~-----~g~~~~~sD~lAa~l 234 (334)
.+|..++ ..+|.++|+++..+ ..+..++. ..|++ ..+..+|+.|.|||+++. .+..++|||++|+++
T Consensus 82 vGq~~L~~~~~~~l~~~gi~~~qi-l~t~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~l 160 (372)
T PRK05429 82 VGQSRLMQAYEELFARYGITVAQI-LLTRDDLEDRERYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALV 160 (372)
T ss_pred HhHHHHHHHHHHHHHHCCCCEEEE-EeehhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHHHHHH
Confidence 7776664 44589999998643 22322222 23554 335678999999999963 245689999999999
Q ss_pred HHHcCCcEEEEeecCCccccCCCCCCCCCcccccccH--HHHhhC----------CCCcchHHHHHHHHhCCCcEEEEcC
Q 019877 235 CAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTSK----------DLSVMDMTAITLCQENNIPVVVFNL 302 (334)
Q Consensus 235 A~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~--~e~~~~----------g~~v~k~~Aa~~a~~~Gi~V~I~ng 302 (334)
|.+++||+|+|+|||||||++||+.+|++++|+++++ +|+.++ |.|.+|++|+..|.+.|++++|+|+
T Consensus 161 A~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g 240 (372)
T PRK05429 161 ANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASG 240 (372)
T ss_pred HHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcC
Confidence 9999999999999999999999999999999999987 445432 3367899999999999999999999
Q ss_pred CChhHHHHHHcCCCCceEEecCCCC
Q 019877 303 NQPGNIAKAIQGERVGTLIGGTWNS 327 (334)
Q Consensus 303 ~~~~~l~~~l~g~~~GT~I~~~~~~ 327 (334)
++|+.+.++++|+..||+|.+..++
T Consensus 241 ~~~~~l~~~l~g~~~GT~i~~~~~~ 265 (372)
T PRK05429 241 REPDVLLRLLAGEAVGTLFLPQEKP 265 (372)
T ss_pred CCccHHHHHhcCCCCCEEEeeCCcc
Confidence 9999999999999999999975443
No 15
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=100.00 E-value=8.6e-35 Score=266.47 Aligned_cols=211 Identities=31% Similarity=0.512 Sum_probs=177.5
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHH-cccCCCCCChHHHHHHHHHHHHH
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA-AGNSGLDRSSADYIGMLATVMNA 170 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~-~~~~gl~~~~~d~~~~la~~~n~ 170 (334)
++|||||||++++++ +.+.+++++++|+++.+ |+++|||||||++++.+.. .+..+++....|++++.++++|.
T Consensus 1 ~iViKlGGs~l~~~~----~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~ln~ 75 (221)
T cd04253 1 RIVISLGGSVLAPEK----DADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLNA 75 (221)
T ss_pred CEEEEeccceeCCCC----ChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 589999999997642 67899999999998765 7899999999999877533 22234554456778888999999
Q ss_pred HHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEeecCC
Q 019877 171 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 250 (334)
Q Consensus 171 ~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilTDVd 250 (334)
.+++.++. .|+++..++ .+.+.++|+.|.|||++|+. +..++|++|+++|.+++||+|+++||||
T Consensus 76 ~~~~~~l~-~~~~~~~~~------------~~~~~~~l~~g~vpv~~G~~--~~~s~D~~a~~lA~~l~a~~li~~tdVd 140 (221)
T cd04253 76 RLLIAALG-DAYPPVPTS------------YEEALEAMFTGKIVVMGGTE--PGQSTDAVAALLAERLGADLLINATNVD 140 (221)
T ss_pred HHHHHHHh-cCCCcCCCC------------HHHHHHHHHcCCeEEEECCC--CCCccHHHHHHHHHHcCCCEEEEEeCCC
Confidence 99988665 787765321 13456889999999999874 4579999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccccHHHHhhC--------CC-CcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEE
Q 019877 251 GVYDDNPRRNPNARLLDTLTYQEVTSK--------DL-SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 321 (334)
Q Consensus 251 GVyt~dP~~~p~aklI~~Is~~e~~~~--------g~-~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I 321 (334)
|||++||+.+|++++|++|+++|+.++ |. +.+|+.+++++.+.|++++|+||++|+.|.++|+|+.+||+|
T Consensus 141 GVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~I 220 (221)
T cd04253 141 GVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTII 220 (221)
T ss_pred eeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeEe
Confidence 999999999999999999999888654 22 567999999999999999999999999999999999999998
Q ss_pred e
Q 019877 322 G 322 (334)
Q Consensus 322 ~ 322 (334)
.
T Consensus 221 ~ 221 (221)
T cd04253 221 E 221 (221)
T ss_pred C
Confidence 4
No 16
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=100.00 E-value=1.1e-34 Score=283.78 Aligned_cols=231 Identities=28% Similarity=0.393 Sum_probs=182.0
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCCh--HHHHHHHHHHH
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS--ADYIGMLATVM 168 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~--~d~~~~la~~~ 168 (334)
+++||||||++|++++. .++.+++.+++++|++++++|+++|||||||. +.++..+ ++..++ ....++++..+
T Consensus 1 ~riVIKiGgs~l~~~~~-~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~-~~g~~~l---g~~~~~~~l~~~qa~aa~G 75 (363)
T TIGR01027 1 QRIVVKVGSSSLTGSSG-SLDRSHIAELVEQVAALHAAGHEVVIVSSGAI-AAGFEAL---GLPERPKTLAEKQALAAVG 75 (363)
T ss_pred CeEEEEeccceEeCCCC-CcCHHHHHHHHHHHHHHHHCCCeEEEEeCcHH-hcCcccc---CCCCCccchHHHHHHHHhC
Confidence 47999999999998643 38999999999999999999999999998763 2233333 343322 22346777777
Q ss_pred HHHHHH---HHHHHcCCCeeEEeceeccccc--hhHHH--HHHHHHHhCCCEEEEeCC-----CCCcccChHHHHHHHHH
Q 019877 169 NAIFLQ---ATMESIGIPTRVQTAFRMSEVA--EPYIR--RRAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCA 236 (334)
Q Consensus 169 n~~Lv~---~~L~~~Gi~a~~l~~~~~~~~~--~~~i~--~~i~~lL~~G~IPVi~g~-----~g~~~~~sD~lAa~lA~ 236 (334)
|..++. ..|.++|+++. +...+..++. ..|++ ..+..+|++|.|||++.. .+..++|||++|+++|.
T Consensus 76 q~~l~~~~~~~l~~~Gi~~a-qillt~~d~~~~~~~lna~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~ 154 (363)
T TIGR01027 76 QVRLMQLYEQLFSQYGIKVA-QILLTRADFSDRERYLNARNTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAI 154 (363)
T ss_pred hHHHHHHHHHHHHHcCCeEE-EEEEeccchhhHHHHHHHHHHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHH
Confidence 776654 45999999974 3333433332 24554 335789999999999853 34668999999999999
Q ss_pred HcCCcEEEEeecCCccccCCCCCCCCCcccccccHH--HHhh--------C--CCCcchHHHHHHHHhCCCcEEEEcCCC
Q 019877 237 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ--EVTS--------K--DLSVMDMTAITLCQENNIPVVVFNLNQ 304 (334)
Q Consensus 237 ~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~--e~~~--------~--g~~v~k~~Aa~~a~~~Gi~V~I~ng~~ 304 (334)
+++||.|+|+|||||||++||+.+|+|++|+++++. ++.+ . |.|.+|++|+..|.+.|++++|+|+.+
T Consensus 155 ~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~ 234 (363)
T TIGR01027 155 LVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSK 234 (363)
T ss_pred HcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence 999999999999999999999999999999999854 2221 1 337789999999999999999999999
Q ss_pred hhHHHHHHcCCCCceEEecCCCC
Q 019877 305 PGNIAKAIQGERVGTLIGGTWNS 327 (334)
Q Consensus 305 ~~~l~~~l~g~~~GT~I~~~~~~ 327 (334)
|+.+.++++|+.+||+|.+..++
T Consensus 235 ~~~l~~~l~g~~~GT~i~~~~~~ 257 (363)
T TIGR01027 235 PEKIADALEGAPVGTLFHAQARR 257 (363)
T ss_pred ccHHHHHhcCCCCcEEEeeCCCC
Confidence 99999999999999999875443
No 17
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=3.8e-35 Score=273.43 Aligned_cols=222 Identities=23% Similarity=0.335 Sum_probs=175.1
Q ss_pred eEEEEeCCccccCCC-CCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCC--Ch-----HHHHHH
Q 019877 92 RVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR--SS-----ADYIGM 163 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~-~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~--~~-----~d~~~~ 163 (334)
++|||+||++|++++ ++.++.+.+++++++|++++ |+++|||||||++.+. .+..+++.. +. ....++
T Consensus 1 ~iVIKiGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~--~~~~~g~~~g~~~~~~~~l~~~~~ 76 (252)
T cd04241 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHP--KAKEYGLPDGDGSFSAEGVAETHE 76 (252)
T ss_pred CEEEEEeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCH--HHHHhCCCcCCCchhhhhHHHHHH
Confidence 489999999999864 56799999999999999887 8999999999999654 333334431 11 222334
Q ss_pred HHHHHHHHHHHHHHHHcCCCeeEEeceecccc--ch-hHHH-HHHHHHHhCCCEEEEeCC---C---CCcccChHHHHHH
Q 019877 164 LATVMNAIFLQATMESIGIPTRVQTAFRMSEV--AE-PYIR-RRAVRHLEKGRVVIFAAG---T---GNPFFTTDTAAAL 233 (334)
Q Consensus 164 la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~--~~-~~i~-~~i~~lL~~G~IPVi~g~---~---g~~~~~sD~lAa~ 233 (334)
....+|..+++ +|.++|+++.++++.+.... ++ ..++ +.+.++|+.|+|||++++ . +..++++|++|++
T Consensus 77 ~~~~ln~~~~~-~l~~~g~~a~~l~~~~~~~~~~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~ 155 (252)
T cd04241 77 AMLELNSIVVD-ALLEAGVPAVSVPPSSFFVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVE 155 (252)
T ss_pred HHHHHHHHHHH-HHHHCCCCeEEEChHHeEEecCCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHH
Confidence 44567776666 48899999988777553211 11 1122 446789999999999873 1 2356899999999
Q ss_pred HHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC------------CCCcchHHHHHHHHhCCCcEEEEc
Q 019877 234 RCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------------DLSVMDMTAITLCQENNIPVVVFN 301 (334)
Q Consensus 234 lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~------------g~~v~k~~Aa~~a~~~Gi~V~I~n 301 (334)
+|.+++||+|+|+|||||||++|| |++++|+++++++++++ |.|..|+++|..+.++|++++|+|
T Consensus 156 lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~ 232 (252)
T cd04241 156 LAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFN 232 (252)
T ss_pred HHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 999999999999999999999999 88999999998655322 346779999999999999999999
Q ss_pred CCChhHHHHHHcCCCCceEE
Q 019877 302 LNQPGNIAKAIQGERVGTLI 321 (334)
Q Consensus 302 g~~~~~l~~~l~g~~~GT~I 321 (334)
+.+|+.+.++++|+.+||+|
T Consensus 233 g~~~~~l~~~l~g~~~GT~i 252 (252)
T cd04241 233 GDKPENLYRALLGNFIGTRI 252 (252)
T ss_pred CCCHHHHHHHHcCCCCceEC
Confidence 99999999999999999986
No 18
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=100.00 E-value=2.1e-34 Score=268.75 Aligned_cols=224 Identities=25% Similarity=0.409 Sum_probs=173.5
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHcccCCCCCC--hHHHHHHHHHHH
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGNSGLDRS--SADYIGMLATVM 168 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~~~~gl~~~--~~d~~~~la~~~ 168 (334)
++||||||+++++++. .++.+++.+++++|+++++.|+++|||||| |++ ++..++ +... ..+..+++++.+
T Consensus 1 ~iViK~GGs~i~~~~~-~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~--g~~~~~---~~~~~~~~~~~~~~~~~G 74 (251)
T cd04242 1 RIVVKVGSSLLTDEDG-GLDLGRLASLVEQIAELRNQGKEVILVSSGAVAA--GRQRLG---LEKRPKTLPEKQALAAVG 74 (251)
T ss_pred CEEEEeCCCeeeCCCC-CcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhh--Chhhhc---cCcCCCchhHHHHHHHHh
Confidence 5899999999998742 357899999999999999999999999964 544 333332 2211 222334555555
Q ss_pred HHH---HHHHHHHHcCCCeeEEeceeccccch--hHHH--HHHHHHHhCCCEEEEeCC-----CCCcccChHHHHHHHHH
Q 019877 169 NAI---FLQATMESIGIPTRVQTAFRMSEVAE--PYIR--RRAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCA 236 (334)
Q Consensus 169 n~~---Lv~~~L~~~Gi~a~~l~~~~~~~~~~--~~i~--~~i~~lL~~G~IPVi~g~-----~g~~~~~sD~lAa~lA~ 236 (334)
|.. +++.+|.++|+++.. ...+-.++.. .+.+ ..+..+|+.|+|||+++. .+..++++|++|+++|.
T Consensus 75 q~~l~~~~~~~l~~~Gi~~~q-~l~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~ 153 (251)
T cd04242 75 QSLLMALYEQLFAQYGIKVAQ-ILLTRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAG 153 (251)
T ss_pred HHHHHHHHHHHHHHcCCeEEE-EEEehhHhcchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHH
Confidence 544 455679999999853 2222222221 2222 335778999999999973 23568899999999999
Q ss_pred HcCCcEEEEeecCCccccCCCCCCCCCccccccc--HHHHhhC----------CCCcchHHHHHHHHhCCCcEEEEcCCC
Q 019877 237 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT--YQEVTSK----------DLSVMDMTAITLCQENNIPVVVFNLNQ 304 (334)
Q Consensus 237 ~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is--~~e~~~~----------g~~v~k~~Aa~~a~~~Gi~V~I~ng~~ 304 (334)
+++||+|+|+|||||||++||+.+|++++|++|+ ++|+.++ |.|..|++++..+.++|++++|+|+++
T Consensus 154 ~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~ 233 (251)
T cd04242 154 LVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRK 233 (251)
T ss_pred HcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 9999999999999999999999999999999999 8877542 235679999999999999999999999
Q ss_pred hhHHHHHHcCCCCceEEe
Q 019877 305 PGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 305 ~~~l~~~l~g~~~GT~I~ 322 (334)
|+.+.++++|+..||+|.
T Consensus 234 ~~~i~~~l~g~~~GT~i~ 251 (251)
T cd04242 234 PDVLLDILAGEAVGTLFL 251 (251)
T ss_pred CCHHHHHHcCCCCCeEeC
Confidence 999999999999999983
No 19
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=100.00 E-value=1.1e-34 Score=265.54 Aligned_cols=211 Identities=31% Similarity=0.485 Sum_probs=177.3
Q ss_pred EEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHH-cccCCCCCChHHHHHHHHHHHHHH
Q 019877 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA-AGNSGLDRSSADYIGMLATVMNAI 171 (334)
Q Consensus 93 iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~-~~~~gl~~~~~d~~~~la~~~n~~ 171 (334)
+||||||++|++++ +.+.+++++++|+++++. +++|||||||.+++.+.. ....++.....|++++.++++|.+
T Consensus 1 iViKlGGs~l~~~~----~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ln~~ 75 (221)
T TIGR02076 1 IVISLGGSVLSPEI----DAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNAM 75 (221)
T ss_pred CEEEechhhcCCCC----CHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHHH
Confidence 58999999999752 688999999999999876 899999999999876422 222344444567788889999999
Q ss_pred HHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEeecCCc
Q 019877 172 FLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDG 251 (334)
Q Consensus 172 Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilTDVdG 251 (334)
++..+|...++++...+ .....++++.|.+||++|+. +..++|++|+++|.+++||+|+++|||||
T Consensus 76 ~l~~ll~~~~~~~~~~~------------~~~~~~~l~~g~ipv~~G~~--~~~s~D~~A~~lA~~l~A~~li~ltdVdG 141 (221)
T TIGR02076 76 LLIAALGDDAYPKVPEN------------FEEALEAMSLGKIVVMGGTH--PGHTTDAVAALLAEFSKADLLINATNVDG 141 (221)
T ss_pred HHHHHHHhcCCCCcCCC------------HHHHHHHHHcCCEEEEcCCC--CCCCcHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 99887877788875321 12235788899999999864 56899999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccccHHHHhhC--------C-CCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 252 VYDDNPRRNPNARLLDTLTYQEVTSK--------D-LSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 252 Vyt~dP~~~p~aklI~~Is~~e~~~~--------g-~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
||++||+.+|++++|++++++|+.++ | .+.+|+.+++.+.+.|++++|+|+++|+++.+++.|+..||+|.
T Consensus 142 vy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 221 (221)
T TIGR02076 142 VYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTIIE 221 (221)
T ss_pred ccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEeC
Confidence 99999999999999999999887653 2 24679999999999999999999999999999999999999984
No 20
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=100.00 E-value=1.1e-34 Score=268.13 Aligned_cols=220 Identities=27% Similarity=0.385 Sum_probs=178.3
Q ss_pred EEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHccc-----CCC--CCChHHHHHHHH
Q 019877 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGL--DRSSADYIGMLA 165 (334)
Q Consensus 94 VIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~-----~gl--~~~~~d~~~~la 165 (334)
||||||+++++ .+.+++++++|+.+++.|+++|||||||++++.. ...+. .+. .....+.+.+.+
T Consensus 1 ViKiGGs~l~~-------~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (248)
T cd02115 1 VIKFGGSSVSS-------EERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMG 73 (248)
T ss_pred CEeeCccccCC-------HHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHH
Confidence 79999999986 3579999999999988899999999999986552 22111 112 222333445566
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEeceeccccc-------h--hHHHHHHHHHHhCCCEEEEeCCCC--------CcccChH
Q 019877 166 TVMNAIFLQATMESIGIPTRVQTAFRMSEVA-------E--PYIRRRAVRHLEKGRVVIFAAGTG--------NPFFTTD 228 (334)
Q Consensus 166 ~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~-------~--~~i~~~i~~lL~~G~IPVi~g~~g--------~~~~~sD 228 (334)
+..+..++..+|.++|+++..+.+.+..... . .+..+.+.++|+.|.|||++|+.+ .+++++|
T Consensus 74 ~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD 153 (248)
T cd02115 74 EGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSD 153 (248)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEchHHcCeEeCCCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHH
Confidence 7777788888899999999887765432111 1 112345678999999999998532 3578999
Q ss_pred HHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCCh
Q 019877 229 TAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQP 305 (334)
Q Consensus 229 ~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~ 305 (334)
++|+++|.+|+|++|+|+|||||||++||+.+|++++|++|+++|+.++ |.|++|++++..+.+.|++++|+|+.+|
T Consensus 154 ~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~ 233 (248)
T cd02115 154 STAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENP 233 (248)
T ss_pred HHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCc
Confidence 9999999999999999999999999999999999999999999888764 7789999999999999999999999999
Q ss_pred hHHHHHHcCCCCceEE
Q 019877 306 GNIAKAIQGERVGTLI 321 (334)
Q Consensus 306 ~~l~~~l~g~~~GT~I 321 (334)
+.+ +++.+++.||+|
T Consensus 234 ~~l-~~~~~~~~GT~I 248 (248)
T cd02115 234 GAL-ALFTPDGGGTLI 248 (248)
T ss_pred ccc-cccCCCCCCCCC
Confidence 999 999999999986
No 21
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=100.00 E-value=4.5e-33 Score=257.77 Aligned_cols=214 Identities=25% Similarity=0.337 Sum_probs=169.0
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHH-HcccCC--CCCChHHHHHHHHHH
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGAS-AAGNSG--LDRSSADYIGMLATV 167 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~-~~~~~g--l~~~~~d~~~~la~~ 167 (334)
.+||||||+++.+ .+.+++++++|+.+++.|+++|||||| |..++... ..+... .+....+.+.+.++.
T Consensus 1 ~iViK~GGs~l~~-------~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~~~Ge~ 73 (239)
T cd04246 1 IIVQKFGGTSVAD-------IERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQ 73 (239)
T ss_pred CEEEEECccccCC-------HHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHHHHhHH
Confidence 3799999999985 568999999999999999999999985 66655532 222111 122334444555678
Q ss_pred HHHHHHHHHHHHcCCCeeEEeceecc-----ccch---hHHH-HHHHHHHhCCCEEEEeCCCC---------CcccChHH
Q 019877 168 MNAIFLQATMESIGIPTRVQTAFRMS-----EVAE---PYIR-RRAVRHLEKGRVVIFAAGTG---------NPFFTTDT 229 (334)
Q Consensus 168 ~n~~Lv~~~L~~~Gi~a~~l~~~~~~-----~~~~---~~i~-~~i~~lL~~G~IPVi~g~~g---------~~~~~sD~ 229 (334)
++..++..+|+++|+++.++++.+.. .... ..++ +.+.+++++|.|||++|+.+ ..++++|+
T Consensus 74 ~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~ 153 (239)
T cd04246 74 ISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDT 153 (239)
T ss_pred HHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHH
Confidence 88888888899999999888766531 1111 1223 44678999999999988621 12458999
Q ss_pred HHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChh
Q 019877 230 AAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPG 306 (334)
Q Consensus 230 lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~ 306 (334)
+|+++|.+++||+|+++|||||||++||+.+|++++|++++++|+.++ |.+++|++|+++|.++|||++|+|+++|+
T Consensus 154 ~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~ 233 (239)
T cd04246 154 TAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN 233 (239)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC
Confidence 999999999999999999999999999999999999999999988763 78899999999999999999999998873
Q ss_pred HHHHHHcCCCCceEEe
Q 019877 307 NIAKAIQGERVGTLIG 322 (334)
Q Consensus 307 ~l~~~l~g~~~GT~I~ 322 (334)
.||+|.
T Consensus 234 ----------~gt~i~ 239 (239)
T cd04246 234 ----------PGTLIT 239 (239)
T ss_pred ----------CCcEeC
Confidence 599884
No 22
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=100.00 E-value=5.1e-33 Score=257.50 Aligned_cols=214 Identities=24% Similarity=0.311 Sum_probs=169.5
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHcc-cCC--CCCChHHHHHHHHHH
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAG-NSG--LDRSSADYIGMLATV 167 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~~-~~g--l~~~~~d~~~~la~~ 167 (334)
.+||||||+++.+ .+.+++++++|+.+++.|+++|||||| |..++.+.... ... .+....+.+.+.+++
T Consensus 1 ~iViK~GGs~l~~-------~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~~~~~~~~~~~i~a~Ge~ 73 (239)
T cd04261 1 LIVQKFGGTSVAS-------IERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQ 73 (239)
T ss_pred CEEEEECCcccCC-------HHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3799999999975 568999999999999999999999987 66655532221 111 122233344445678
Q ss_pred HHHHHHHHHHHHcCCCeeEEeceecc-----ccch---hHHH-HHHHHHHhCCCEEEEeCCCC---------CcccChHH
Q 019877 168 MNAIFLQATMESIGIPTRVQTAFRMS-----EVAE---PYIR-RRAVRHLEKGRVVIFAAGTG---------NPFFTTDT 229 (334)
Q Consensus 168 ~n~~Lv~~~L~~~Gi~a~~l~~~~~~-----~~~~---~~i~-~~i~~lL~~G~IPVi~g~~g---------~~~~~sD~ 229 (334)
++..++..+|+++|+++.++++.+.. ++.. .+++ +.+..++++|.|||++|+.+ ..++++|+
T Consensus 74 ~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~ 153 (239)
T cd04261 74 VSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDT 153 (239)
T ss_pred HHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHH
Confidence 88888888899999999988776531 1111 1233 44678999999999988621 12459999
Q ss_pred HHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChh
Q 019877 230 AAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPG 306 (334)
Q Consensus 230 lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~ 306 (334)
+|+++|.+++||+|++||||||||++||+.+|++++|++|+++|+.++ |.+++|+.|+.+|.++|++++|+|+++|+
T Consensus 154 ~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~ 233 (239)
T cd04261 154 SAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE 233 (239)
T ss_pred HHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC
Confidence 999999999999999999999999999999999999999999998764 78899999999999999999999998873
Q ss_pred HHHHHHcCCCCceEEe
Q 019877 307 NIAKAIQGERVGTLIG 322 (334)
Q Consensus 307 ~l~~~l~g~~~GT~I~ 322 (334)
.||+|.
T Consensus 234 ----------~gt~i~ 239 (239)
T cd04261 234 ----------PGTLIT 239 (239)
T ss_pred ----------CCcEeC
Confidence 599884
No 23
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=1.5e-32 Score=257.75 Aligned_cols=215 Identities=21% Similarity=0.323 Sum_probs=170.4
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHH-cccCCCCCChHHHHHHHHHHHH
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA-AGNSGLDRSSADYIGMLATVMN 169 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~-~~~~gl~~~~~d~~~~la~~~n 169 (334)
..+|||||||+|++++ .+.+.+++++|+++++ +++++||||||++++.+.. ....+++....+.+++.+..+|
T Consensus 31 ~~~ViKiGGSvitdk~-----~~~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln 104 (262)
T cd04255 31 DLNVVKIGGQSIIDRG-----AEAVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQN 104 (262)
T ss_pred CcEEEEeccceecCCc-----HHHHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 3599999999999863 5789999999999876 6899999999999864321 1234666666777788888899
Q ss_pred HHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCC------------CcccChHHHHHHHHHH
Q 019877 170 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTG------------NPFFTTDTAAALRCAE 237 (334)
Q Consensus 170 ~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g------------~~~~~sD~lAa~lA~~ 237 (334)
..++..+|..+|+++. +..+ . ..+.++|+.|+|||++|+++ .+++++|++|+++|.+
T Consensus 105 ~lv~~~~l~~~g~~~i--~~~~--------~-~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~ 173 (262)
T cd04255 105 AEMLATLLAKHGGSKV--GHGD--------L-LQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEV 173 (262)
T ss_pred HHHHHHHHHHcCCCcc--cccc--------H-HHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHH
Confidence 8888777888999873 1111 1 24678999999999999732 4678999999999999
Q ss_pred cCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhCC--CCcchH--HHHHHHHhCCCcEEEEcCCChhHHHHHHc
Q 019877 238 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKD--LSVMDM--TAITLCQENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 238 l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g--~~v~k~--~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
++||+|+++|||||||++||+.+|++++|++|++.++.+.. ...+.- .....+.+..++++|+||++|+++.++++
T Consensus 174 l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~ 253 (262)
T cd04255 174 IGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALR 253 (262)
T ss_pred hCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHc
Confidence 99999999999999999999999999999999998876542 122322 22222233346899999999999999999
Q ss_pred CCCCceEEe
Q 019877 314 GERVGTLIG 322 (334)
Q Consensus 314 g~~~GT~I~ 322 (334)
|+.+||+|.
T Consensus 254 g~~~GT~i~ 262 (262)
T cd04255 254 GEHVGTIIR 262 (262)
T ss_pred CCCCceEeC
Confidence 999999984
No 24
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=100.00 E-value=5e-33 Score=252.59 Aligned_cols=225 Identities=26% Similarity=0.388 Sum_probs=174.4
Q ss_pred EEEEeCCccccCCC-CCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCC-------CChHHHHHHH
Q 019877 93 VLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD-------RSSADYIGML 164 (334)
Q Consensus 93 iVIKlGGS~lt~~~-~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~-------~~~~d~~~~l 164 (334)
+|+|||||+||+|+ +.+++++.++++|++|++ ..-.++|||||||+| ||..++++++. +.-....+..
T Consensus 3 ~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSF--GHp~Ak~~~~~~~~~~~s~~G~~~~~~a 78 (252)
T COG1608 3 IILKLGGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSF--GHPAAKEFGLEGLKNYLSPLGFSLTHLA 78 (252)
T ss_pred EEEEecceeeecCCCcchhhHHHHHHHHHHHhc--CCcccEEEEecCccc--cCHHHHHhCccccccccCccchHHHHHH
Confidence 89999999999995 788999999999999985 222478899999999 66666666551 1111223444
Q ss_pred HHHHHHHHHHHHHHHcCCCeeEEeceeccccch--hHH-HHHHHHHHhCCCEEEEeCC------CCCcccChHHHHHHHH
Q 019877 165 ATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE--PYI-RRRAVRHLEKGRVVIFAAG------TGNPFFTTDTAAALRC 235 (334)
Q Consensus 165 a~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~--~~i-~~~i~~lL~~G~IPVi~g~------~g~~~~~sD~lAa~lA 235 (334)
...+|.+++.. |.+.|++++...+.+....+. .|- -..+.++|+.|+|||++|+ .|..++++|.++.++|
T Consensus 79 m~~L~~~V~~~-l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA 157 (252)
T COG1608 79 MLELNSIVVDA-LLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLA 157 (252)
T ss_pred HHHHHHHHHHH-HHhcCCccccccCcceeecCCceeechHHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHHH
Confidence 55677777765 889999986433333211111 122 2446789999999999984 2566799999999999
Q ss_pred HHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CCCcchHHHHHHHHhCCCcEEEEcCCChhHH
Q 019877 236 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIPVVVFNLNQPGNI 308 (334)
Q Consensus 236 ~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l 308 (334)
+.+++|+++|+|||||||++||...|+++.++++.......- |.+.-|++++....+++.+|+|+||++|++|
T Consensus 158 ~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni 237 (252)
T COG1608 158 KELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENI 237 (252)
T ss_pred HHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHHH
Confidence 999999999999999999999999999999999875322111 1223489999999999999999999999999
Q ss_pred HHHHcCCCCceEEe
Q 019877 309 AKAIQGERVGTLIG 322 (334)
Q Consensus 309 ~~~l~g~~~GT~I~ 322 (334)
.++++|+.+||+|.
T Consensus 238 ~~~l~G~~vGT~I~ 251 (252)
T COG1608 238 YRALRGENVGTRID 251 (252)
T ss_pred HHHhcCCCCceEec
Confidence 99999999999985
No 25
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=100.00 E-value=1.7e-32 Score=252.27 Aligned_cols=204 Identities=26% Similarity=0.304 Sum_probs=165.2
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCch-HHHHHHHcccCCCCCChHHHHHHHHHHHHH
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGNSGLDRSSADYIGMLATVMNA 170 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~-~~~g~~~~~~~gl~~~~~d~~~~la~~~n~ 170 (334)
++|+||||+++.+ .+.+++++++|+.+ +.|+++||||||+. +.+....+. .+.++++.++.
T Consensus 1 ~iViK~GGs~l~~-------~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~----------~~~s~Ge~~~~ 62 (227)
T cd04234 1 MVVQKFGGTSVAS-------AERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA----------LLLSFGERLSA 62 (227)
T ss_pred CEEEEECccccCC-------HHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH----------HHHHHHHHHHH
Confidence 4799999999986 46899999999999 88999999998744 322222211 34457888999
Q ss_pred HHHHHHHHHcCCCeeEEeceeccccc-------hh-HH-HHHHHHHHhC-CCEEEEeCCC-----C----CcccChHHHH
Q 019877 171 IFLQATMESIGIPTRVQTAFRMSEVA-------EP-YI-RRRAVRHLEK-GRVVIFAAGT-----G----NPFFTTDTAA 231 (334)
Q Consensus 171 ~Lv~~~L~~~Gi~a~~l~~~~~~~~~-------~~-~i-~~~i~~lL~~-G~IPVi~g~~-----g----~~~~~sD~lA 231 (334)
.++..+|+++|+++..+++.+..... .. .. .+.+.++++. |.|||++|+. + ..++++|++|
T Consensus 63 ~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A 142 (227)
T cd04234 63 RLLAAALRDRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSA 142 (227)
T ss_pred HHHHHHHHHCCCCeEEeCHHHCCEEcCCccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHH
Confidence 99998999999999988876542111 11 11 2446778999 9999998852 1 1245899999
Q ss_pred HHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHH
Q 019877 232 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNI 308 (334)
Q Consensus 232 a~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l 308 (334)
+++|.+|+||+|++||||||||++||+.+|++++|++++++|+.++ |.+++|++|+++|.++|++++|.|+++|+
T Consensus 143 ~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~-- 220 (227)
T cd04234 143 AALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPE-- 220 (227)
T ss_pred HHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCC--
Confidence 9999999999999999999999999999999999999999998764 77889999999999999999999998875
Q ss_pred HHHHcCCCCceEEe
Q 019877 309 AKAIQGERVGTLIG 322 (334)
Q Consensus 309 ~~~l~g~~~GT~I~ 322 (334)
..||+|.
T Consensus 221 -------~~gT~I~ 227 (227)
T cd04234 221 -------APGTLIT 227 (227)
T ss_pred -------CCCCEeC
Confidence 3599884
No 26
>PRK08841 aspartate kinase; Validated
Probab=100.00 E-value=2.8e-32 Score=269.22 Aligned_cols=218 Identities=21% Similarity=0.274 Sum_probs=175.5
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCch-HHHHHHHcc-cC-CC-CCChHHHHHHHH
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN-IFRGASAAG-NS-GL-DRSSADYIGMLA 165 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~-~~~g~~~~~-~~-gl-~~~~~d~~~~la 165 (334)
|+++|+||||+++.+ .+.+++++++|+.+++.|.++||||||+. ..+....+. .. .+ +.+..|.+.++|
T Consensus 1 m~~~V~KfGGtsv~~-------~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~~~~~~~~~~d~l~s~G 73 (392)
T PRK08841 1 MPLIVQKFGGTSVGS-------IERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAG 73 (392)
T ss_pred CCeEEEeECcccCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhhccCCCHHHHHHHHHHH
Confidence 458999999999986 57899999999999999999999998865 444432221 11 11 223445666788
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEeceecc----c-cchh---HHH-HHHHHHHhCCCEEEEeCCCC---------CcccCh
Q 019877 166 TVMNAIFLQATMESIGIPTRVQTAFRMS----E-VAEP---YIR-RRAVRHLEKGRVVIFAAGTG---------NPFFTT 227 (334)
Q Consensus 166 ~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~----~-~~~~---~i~-~~i~~lL~~G~IPVi~g~~g---------~~~~~s 227 (334)
+.++..+++.+|+++|+++.++++++.. + .... .++ ..+.++++.|.|||++|+.| ..++++
T Consensus 74 E~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggs 153 (392)
T PRK08841 74 EQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGS 153 (392)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCCceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCCh
Confidence 8899999999999999999999887642 1 1111 232 34567899999999998632 235699
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCC
Q 019877 228 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQ 304 (334)
Q Consensus 228 D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~ 304 (334)
|++|+.+|.+|+||+|++||||||||++||+.+|+|++|++|+|+|+.++ |.+++|++|+.+|.++|||++|.|+++
T Consensus 154 D~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~ 233 (392)
T PRK08841 154 DTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFE 233 (392)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCC
Confidence 99999999999999999999999999999999999999999999988764 889999999999999999999999876
Q ss_pred hhHHHHHHcCCCCceEEecC
Q 019877 305 PGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 305 ~~~l~~~l~g~~~GT~I~~~ 324 (334)
+ ..||+|..+
T Consensus 234 ~----------~~GT~I~~~ 243 (392)
T PRK08841 234 V----------GEGTLIKGE 243 (392)
T ss_pred C----------CCCeEEEec
Confidence 4 349999643
No 27
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-32 Score=273.70 Aligned_cols=220 Identities=26% Similarity=0.332 Sum_probs=180.7
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCch-HHHHH-HHcc-------------------
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN-IFRGA-SAAG------------------- 149 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~-~~~g~-~~~~------------------- 149 (334)
+++|.||||+++.+ .+.++++++.|++..+.|.++|+|.+++. +.+.. ..+.
T Consensus 2 ~~iV~KFGGTSva~-------~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~ 74 (447)
T COG0527 2 RLIVQKFGGTSVAD-------AERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIAS 74 (447)
T ss_pred ceEEEEeCCcccCC-------HHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 48999999999986 57899999999999888999999998853 43332 2221
Q ss_pred cC--CC--------------------------CCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceecccc-----c
Q 019877 150 NS--GL--------------------------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----A 196 (334)
Q Consensus 150 ~~--gl--------------------------~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~-----~ 196 (334)
.. .. +++..|++..+||.+++.|++.+|++.|+++.++++++.... +
T Consensus 75 el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~ 154 (447)
T COG0527 75 ELILDPFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHG 154 (447)
T ss_pred HHhhcchhhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCccc
Confidence 00 11 234556677789999999999999999999999998864311 1
Q ss_pred hhHH----HHH-HHHHHhCCCEEEEeCCCC---------CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCC
Q 019877 197 EPYI----RRR-AVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN 262 (334)
Q Consensus 197 ~~~i----~~~-i~~lL~~G~IPVi~g~~g---------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~ 262 (334)
+..+ .+. +..+++.|.|||++||.| ++++++|+.|++||.+++||++.|||||||||++|||++|+
T Consensus 155 ~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~ 234 (447)
T COG0527 155 NARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPD 234 (447)
T ss_pred ccccchhhhhhhHHHHhcCCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCc
Confidence 1111 123 567889999999999754 34689999999999999999999999999999999999999
Q ss_pred CcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecCCC
Q 019877 263 ARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 326 (334)
Q Consensus 263 aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~~~ 326 (334)
|++|++|+|+|+.++ |++++|++|+.+|.+++||++|.|.++|+ ..||+|..+.+
T Consensus 235 Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~~~~Ip~~i~~t~~p~---------~~GTlI~~~~~ 292 (447)
T COG0527 235 ARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPD---------APGTLITAETE 292 (447)
T ss_pred ceEcCccCHHHHHHHHHCCchhcCHHHHHHHHhcCCcEEEEecCCCC---------CCceEEecCCc
Confidence 999999999999875 89999999999999999999999998875 37999998754
No 28
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-32 Score=246.59 Aligned_cols=241 Identities=20% Similarity=0.270 Sum_probs=191.1
Q ss_pred CCCCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCC----------C
Q 019877 86 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD----------R 155 (334)
Q Consensus 86 ~~~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~----------~ 155 (334)
...|.++||||+|.++++++++..+...++..|++++.+|++.|++++||++ |..+-|.+.++...+. .
T Consensus 5 ~~kka~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSS-GaVA~G~qrLr~~~~~s~s~r~~l~~~ 83 (285)
T KOG1154|consen 5 FLKKAYRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSS-GAVAFGRQRLRQELLPSSSMRQTLKPQ 83 (285)
T ss_pred hhccceEEEEEecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEec-chhhhhHHHhhhhhccchhHHHhhCCc
Confidence 3568899999999999999887778889999999999999999999999996 5555566555433221 1
Q ss_pred ChHHHHHHHHHHHHHHHHHHH---HHHcCCCeeEEeceeccccch--hHH--HHHHHHHHhCCCEEEEeCCC-----CCc
Q 019877 156 SSADYIGMLATVMNAIFLQAT---MESIGIPTRVQTAFRMSEVAE--PYI--RRRAVRHLEKGRVVIFAAGT-----GNP 223 (334)
Q Consensus 156 ~~~d~~~~la~~~n~~Lv~~~---L~~~Gi~a~~l~~~~~~~~~~--~~i--~~~i~~lL~~G~IPVi~g~~-----g~~ 223 (334)
......+++|+.+|..||+.| |.++|+... |.+.+-.|+.+ .|. ..++.++|..|.|||+|..+ +.+
T Consensus 84 ~~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~iA-QvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~ 162 (285)
T KOG1154|consen 84 SELAEKRACAAVGQSGLMALYETLFTQYGITIA-QVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIP 162 (285)
T ss_pred cchhhHHHHHHhCcchHHHHHHHHHHHhccchh-eeeecCcchhhHHHHHHHHHHHHHHHhCCceeeecCCCccCCcccc
Confidence 223446789999999988754 899999875 55555444432 233 35578999999999999853 566
Q ss_pred ccC---hHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHh---hC--------CCCcchHHHHHH
Q 019877 224 FFT---TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT---SK--------DLSVMDMTAITL 289 (334)
Q Consensus 224 ~~~---sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~---~~--------g~~v~k~~Aa~~ 289 (334)
|.| ||++||.+|.+++||.|+++|||||+|+..|. ....++|+..+..+-. .. |.|-.|+.||..
T Consensus 163 ~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd-~~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~~ 241 (285)
T KOG1154|consen 163 FGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPD-ADPSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVN 241 (285)
T ss_pred cCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCC-CCcceeeeeeccCCCCCccccCccCccCcCcchhhHHHHHH
Confidence 776 99999999999999999999999999996554 3446788887765433 11 346679999999
Q ss_pred HHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecCCCCCc
Q 019877 290 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTV 329 (334)
Q Consensus 290 a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~~~~~~ 329 (334)
|...|++|+|++|..|++|.+++.|..+||.|...+.-++
T Consensus 242 A~~~Gv~viI~~g~~p~~I~~iv~g~kvgt~f~~~~~~~~ 281 (285)
T KOG1154|consen 242 ALNAGVSVIITNGDAPENITDIVEGKKVGTFFEQLKRLEV 281 (285)
T ss_pred HhcCCceEEEeCCCChHHHHHHHhhhhhhhhhhhcccccC
Confidence 9999999999999999999999999999999987665554
No 29
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=100.00 E-value=1.1e-31 Score=265.58 Aligned_cols=216 Identities=20% Similarity=0.272 Sum_probs=174.6
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCch-HHHHHHHcccCCC----CCChHHHHHHHHH
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGNSGL----DRSSADYIGMLAT 166 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~-~~~g~~~~~~~gl----~~~~~d~~~~la~ 166 (334)
++|+||||+++.+ .+.+++++++|+.+++.|+++|||||||. +.+.+..+...++ .....+.+.++++
T Consensus 2 ~iViK~GGs~~~~-------~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~~~~~~~~~~~i~~~Ge 74 (401)
T TIGR00656 2 LIVQKFGGTSVGS-------GERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAITPRERDELVSHGE 74 (401)
T ss_pred cEEEEECCcCcCC-------HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhccCCChHHHHHHhhHHH
Confidence 4899999999986 56899999999999999999999999954 4333333332222 2333566677888
Q ss_pred HHHHHHHHHHHHHcCCCeeEEeceecc-----ccchh---H--HHHHHHHHHhCCCEEEEeCCC-----CC----cccCh
Q 019877 167 VMNAIFLQATMESIGIPTRVQTAFRMS-----EVAEP---Y--IRRRAVRHLEKGRVVIFAAGT-----GN----PFFTT 227 (334)
Q Consensus 167 ~~n~~Lv~~~L~~~Gi~a~~l~~~~~~-----~~~~~---~--i~~~i~~lL~~G~IPVi~g~~-----g~----~~~~s 227 (334)
.++..++..+|+++|+++.++++.+.. ...+. . ..+.+.++++.|.|||++|+. |. .++++
T Consensus 75 ~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~s 154 (401)
T TIGR00656 75 RLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGS 154 (401)
T ss_pred HHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCceEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCcH
Confidence 898888888999999999988765431 11111 1 124567899999999999852 22 24689
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCC
Q 019877 228 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQ 304 (334)
Q Consensus 228 D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~ 304 (334)
|++|+++|.+|+|++|++||||||||++||+.+|+++++++++|+|+.++ |.+++|++|+.+|.+++||++|.|+++
T Consensus 155 D~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~ 234 (401)
T TIGR00656 155 DYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFD 234 (401)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCC
Confidence 99999999999999999999999999999999999999999999999874 889999999999999999999999988
Q ss_pred hhHHHHHHcCCCCceEEecC
Q 019877 305 PGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 305 ~~~l~~~l~g~~~GT~I~~~ 324 (334)
|+ .||+|...
T Consensus 235 ~~----------~gT~I~~~ 244 (401)
T TIGR00656 235 PE----------EGTLITNS 244 (401)
T ss_pred CC----------CCeEEEeC
Confidence 74 49999764
No 30
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.98 E-value=4.4e-31 Score=245.76 Aligned_cols=222 Identities=22% Similarity=0.320 Sum_probs=179.4
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCCCChHH---H
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLDRSSAD---Y 160 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~~~~~d---~ 160 (334)
.+++|||+||+++.++ +.+++++++|+.|+..|.++|||||||++++.+ ..++.. |++.+..+ .
T Consensus 2 ~k~~VIK~GG~~~~~~-------~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlev 74 (265)
T COG0548 2 GKTIVIKLGGSAMEDE-------NLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEV 74 (265)
T ss_pred CceEEEEECceeecCc-------hHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHH
Confidence 6899999999999874 468899999999999999999999999998873 444432 45444333 3
Q ss_pred H-HHHHHHHHHHHHHHHHHHcCCCeeEEeceeccc-------------c---ch-hHHHHH-HHHHHhCCCEEEEeCC--
Q 019877 161 I-GMLATVMNAIFLQATMESIGIPTRVQTAFRMSE-------------V---AE-PYIRRR-AVRHLEKGRVVIFAAG-- 219 (334)
Q Consensus 161 ~-~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~-------------~---~~-~~i~~~-i~~lL~~G~IPVi~g~-- 219 (334)
. +++++..|..+++. |+.+|..++++++.+..- . ++ ..+|.+ +..++++|+|||++|.
T Consensus 75 v~mvl~G~vNk~iva~-l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~ 153 (265)
T COG0548 75 VEMVLGGTVNKEIVAR-LSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAV 153 (265)
T ss_pred HHHHHHHHHHHHHHHH-HHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceE
Confidence 3 34677899999885 999999998888766321 1 11 124554 4679999999999983
Q ss_pred --CCCc-ccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CCCcchHHHHHH
Q 019877 220 --TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITL 289 (334)
Q Consensus 220 --~g~~-~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~~v~k~~Aa~~ 289 (334)
+|.. .+++|++|..+|.+|+|++|+++|||+|||+++|+ | .+|++++.+|++++ +.|++|+++|..
T Consensus 154 ~~~G~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~ 229 (265)
T COG0548 154 DEDGETLNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGD--P--SLISELDAEEAEELIEQGIITGGMIPKVEAALE 229 (265)
T ss_pred CCCCcEEeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCCC--c--eeeccCCHHHHHHHHhcCCccCccHHHHHHHHH
Confidence 4555 48999999999999999999999999999998763 2 68999998888764 457899999999
Q ss_pred HHhCCCc-EEEEcCCChhHH-HHHHcCCCCceEEec
Q 019877 290 CQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGG 323 (334)
Q Consensus 290 a~~~Gi~-V~I~ng~~~~~l-~~~l~g~~~GT~I~~ 323 (334)
|++.|++ ++|+||+.++.+ .++|+++++||.|.+
T Consensus 230 A~~~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~~ 265 (265)
T COG0548 230 ALESGVRRVHIISGRVPHSLLLELFTRDGIGTMIVR 265 (265)
T ss_pred HHHhCCCeEEEecCCCcchHHHHHhcCCCcceEecC
Confidence 9999996 999999999995 688999999999863
No 31
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.98 E-value=3.3e-31 Score=279.06 Aligned_cols=231 Identities=19% Similarity=0.271 Sum_probs=181.4
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEE-CCchHHHHHHHcccCCC---------CCChH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV-GGGNIFRGASAAGNSGL---------DRSSA 158 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVh-GgG~~~~g~~~~~~~gl---------~~~~~ 158 (334)
+.+++|||+||++|++++ +.++.+.+.+++++|+.+++.|+++|||+ |++++ |+..++.+++ .....
T Consensus 6 ~~~~iViKiGss~lt~~~-~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~--G~~~~~~~~~~~~~~~~~~~~~~~ 82 (715)
T TIGR01092 6 DVKRIVVKVGTAVVTRGD-GRLALGRLGSICEQLSELNSDGREVILVTSGAVAF--GRQRLRHRILVNSSFADLQKPQPE 82 (715)
T ss_pred cCCEEEEEeCcceeECCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHh--chHHhccchhccccccccCCCCch
Confidence 468999999999999864 67999999999999999999999999855 44554 5555554322 11222
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHcCCCeeEEeceeccccch--hHH--HHHHHHHHhCCCEEEEeCCC-----CC----
Q 019877 159 DYIGMLATVMNAIFLQAT---MESIGIPTRVQTAFRMSEVAE--PYI--RRRAVRHLEKGRVVIFAAGT-----GN---- 222 (334)
Q Consensus 159 d~~~~la~~~n~~Lv~~~---L~~~Gi~a~~l~~~~~~~~~~--~~i--~~~i~~lL~~G~IPVi~g~~-----g~---- 222 (334)
...+++++.+|..|+..| |.++++.+. +..++..++.. .|. ...+..+|+.|.|||+++++ +.
T Consensus 83 ~~~qa~aa~gq~~L~~~y~~~f~~~~i~~a-Q~Llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~ 161 (715)
T TIGR01092 83 LDGKACAAVGQSGLMALYETMFTQLDITAA-QILVTDLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSD 161 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCeeE-EEEechhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCccccccccccc
Confidence 336788888998887653 788999875 44544444432 233 24467899999999999732 21
Q ss_pred ---cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHh-h----------CCCCcchHHHHH
Q 019877 223 ---PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT-S----------KDLSVMDMTAIT 288 (334)
Q Consensus 223 ---~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~-~----------~g~~v~k~~Aa~ 288 (334)
.++|||++|+++|.+++||+|+++|||||||++||+ +|++++|++++..+.. + .|.|..|++|+.
T Consensus 162 ~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~ 240 (715)
T TIGR01092 162 SQGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAV 240 (715)
T ss_pred ccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHH
Confidence 278999999999999999999999999999999996 6899999998754322 1 145778999999
Q ss_pred HHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 289 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 289 ~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
.|.+.|++++|+|+.+++.|.++++|+..||+|.+.
T Consensus 241 ~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~ 276 (715)
T TIGR01092 241 WAAYGGTPVIIASGTAPKNITKVVEGKKVGTLFHED 276 (715)
T ss_pred HHHHCCCeEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence 999999999999999999999999999999999764
No 32
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.98 E-value=5.5e-31 Score=244.82 Aligned_cols=213 Identities=25% Similarity=0.340 Sum_probs=163.3
Q ss_pred EEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEE-----CCchHHHH-HHHcc-cCCCCC--ChHHHHHH
Q 019877 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV-----GGGNIFRG-ASAAG-NSGLDR--SSADYIGM 163 (334)
Q Consensus 93 iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVh-----GgG~~~~g-~~~~~-~~gl~~--~~~d~~~~ 163 (334)
+||||||+++++ ++.+++++++|+.+.+.|+++|||| |||+.+.. ..... ..+.+. ...+.+.+
T Consensus 2 ~ViK~GGs~l~~-------~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~~~~~t~~~~~~~~~ 74 (244)
T cd04260 2 IVQKFGGTSVST-------KERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLMS 74 (244)
T ss_pred EEEEECchhcCC-------HHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 799999999986 4578999999999999998866666 44444322 11111 112322 23344445
Q ss_pred HHHHHHHHHHHHHHHHcCCCeeEEeceecc-----ccc--h-hHHH-HHHHHHHhCCCEEEEeCC---CC--C----ccc
Q 019877 164 LATVMNAIFLQATMESIGIPTRVQTAFRMS-----EVA--E-PYIR-RRAVRHLEKGRVVIFAAG---TG--N----PFF 225 (334)
Q Consensus 164 la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~-----~~~--~-~~i~-~~i~~lL~~G~IPVi~g~---~g--~----~~~ 225 (334)
.++.....++..+|+++|+++..+++.+.. ++. + .+++ +.+..+|+.|.|||++|+ ++ . .++
T Consensus 75 ~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~~~~~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~~~l~rg 154 (244)
T cd04260 75 CGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGRG 154 (244)
T ss_pred HhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecCCCCceeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCEEEeCCC
Confidence 666667767777899999999988765431 111 1 1233 346789999999999885 22 1 235
Q ss_pred ChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcC
Q 019877 226 TTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNL 302 (334)
Q Consensus 226 ~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng 302 (334)
++|++|+++|.+|+|++|++||||||||++||+.+|++++|++|+++|+.++ |.+++|+.|++.+.+.+++++|.|+
T Consensus 155 ~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~~ 234 (244)
T cd04260 155 GSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRST 234 (244)
T ss_pred chHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecC
Confidence 8999999999999999999999999999999999999999999999998774 7789999999999999999999999
Q ss_pred CChhHHHHHHcCCCCceEEe
Q 019877 303 NQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 303 ~~~~~l~~~l~g~~~GT~I~ 322 (334)
++|+ .||+|.
T Consensus 235 ~~~~----------~gt~i~ 244 (244)
T cd04260 235 MSEN----------PGTLIT 244 (244)
T ss_pred CCCC----------CCCEeC
Confidence 8762 489884
No 33
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.98 E-value=2.6e-31 Score=250.21 Aligned_cols=215 Identities=20% Similarity=0.258 Sum_probs=168.0
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC--------C--CCCC---h
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS--------G--LDRS---S 157 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~--------g--l~~~---~ 157 (334)
++||||||+++.++ .+++++|+.+.+.|.++|||||||++++.+ ...+.. | ++.+ .
T Consensus 1 ~~ViK~GG~~l~~~----------~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~ 70 (268)
T PRK14058 1 MIVVKIGGSVGIDP----------EDALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRET 70 (268)
T ss_pred CEEEEEChHHhhCc----------HHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHH
Confidence 58999999999863 245899999999999999999999997663 233221 1 1111 1
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHcCCCeeEEeceeccc-------------------cchh------HHH-HHHHHHHhC
Q 019877 158 ADYIG-MLATVMNAIFLQATMESIGIPTRVQTAFRMSE-------------------VAEP------YIR-RRAVRHLEK 210 (334)
Q Consensus 158 ~d~~~-~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~-------------------~~~~------~i~-~~i~~lL~~ 210 (334)
.+... +++ .+|..+++ +|+++|+++..+++.+..- .+.. .++ +.+..+|+.
T Consensus 71 l~~~~~a~~-~ln~~lv~-~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~ 148 (268)
T PRK14058 71 LEVFIMAMA-LINKQLVE-RLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKA 148 (268)
T ss_pred HHHHHHHHH-HHHHHHHH-HHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHC
Confidence 22333 355 88999887 5999999998887765311 0001 123 446789999
Q ss_pred CCEEEEeCC----CC-CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-----CCC
Q 019877 211 GRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLS 280 (334)
Q Consensus 211 G~IPVi~g~----~g-~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-----g~~ 280 (334)
|.|||++|. .| ..++++|.+|+++|.+++||+|+|+|||||||++||+ ++++|++++++|+.++ |.|
T Consensus 149 g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~tGgM 225 (268)
T PRK14058 149 GYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSKAAGGGM 225 (268)
T ss_pred CCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhhccCCcc
Confidence 999999984 22 2358999999999999999999999999999999883 4789999999887654 668
Q ss_pred cchHHHHHHHHhCCC-cEEEEcCCChhHHHHHHcCCCCceEEec
Q 019877 281 VMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG 323 (334)
Q Consensus 281 v~k~~Aa~~a~~~Gi-~V~I~ng~~~~~l~~~l~g~~~GT~I~~ 323 (334)
..|+++|..+.++|+ +++|+|+++|+++.++++|+ ||+|.+
T Consensus 226 ~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~--GT~I~~ 267 (268)
T PRK14058 226 KKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGE--GTVIVN 267 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCC--ceEEec
Confidence 889999999999999 69999999999999999875 999974
No 34
>PRK06635 aspartate kinase; Reviewed
Probab=99.98 E-value=6.6e-31 Score=260.38 Aligned_cols=218 Identities=25% Similarity=0.339 Sum_probs=172.8
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHH-HHcccC-CC-CCChHHHHHHHH
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGA-SAAGNS-GL-DRSSADYIGMLA 165 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~-~~~~~~-gl-~~~~~d~~~~la 165 (334)
|+++||||||+++.+ .+.+++++++|+.+.+.|+++|||||| |.+.+.+ ..++.. .. +....+.+.+.+
T Consensus 1 m~~iViK~GGs~l~~-------~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~G 73 (404)
T PRK06635 1 MALIVQKFGGTSVGD-------VERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPLPDPRELDMLLSTG 73 (404)
T ss_pred CCeEEEeECCcccCC-------HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhccCCCHHHHHHHhhhh
Confidence 468999999999975 578999999999999899998888886 6665543 222211 11 223344455567
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEeceeccc-----cchh---HH-HHHHHHHHhCCCEEEEeCCC-----C----CcccCh
Q 019877 166 TVMNAIFLQATMESIGIPTRVQTAFRMSE-----VAEP---YI-RRRAVRHLEKGRVVIFAAGT-----G----NPFFTT 227 (334)
Q Consensus 166 ~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~-----~~~~---~i-~~~i~~lL~~G~IPVi~g~~-----g----~~~~~s 227 (334)
+.++..++..+|+++|+++.++++.+..- .... .+ .+.+..+++.|.|||++|+. | ..++++
T Consensus 74 e~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~s 153 (404)
T PRK06635 74 EQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGS 153 (404)
T ss_pred HHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCCh
Confidence 78899888888999999999888765421 1111 12 24467899999999999852 2 234699
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCC
Q 019877 228 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQ 304 (334)
Q Consensus 228 D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~ 304 (334)
|++|+++|.+++||+|++||||||||++||+.+|++++|++++|+|+.++ |.+++|++|+.++.+.|++++|.|+++
T Consensus 154 D~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~ 233 (404)
T PRK06635 154 DTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFS 233 (404)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCC
Confidence 99999999999999999999999999999999999999999999998774 788999999999999999999999875
Q ss_pred hhHHHHHHcCCCCceEEecC
Q 019877 305 PGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 305 ~~~l~~~l~g~~~GT~I~~~ 324 (334)
+ ..||+|...
T Consensus 234 ~----------~~gT~i~~~ 243 (404)
T PRK06635 234 D----------NPGTLITGE 243 (404)
T ss_pred C----------CCCCEEeeC
Confidence 4 349999764
No 35
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.97 E-value=1e-30 Score=249.60 Aligned_cols=214 Identities=27% Similarity=0.361 Sum_probs=169.2
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHcc---cC----------------
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAG---NS---------------- 151 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~~---~~---------------- 151 (334)
++|+||||+++.+ .+.++++++.|.+. ..+.++|+|.++ |.+.+....+. ..
T Consensus 1 ~~V~KFGGtSv~~-------~~~~~~v~~iI~~~-~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~~~~~~~~~l~~i~~~ 72 (298)
T cd04244 1 RLVMKFGGTSVGS-------AERIRHVADLVGTY-AEGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIAGVKDFIEILRLR 72 (298)
T ss_pred CEEEEECcccCCC-------HHHHHHHHHHHHHh-hcCCCEEEEEeCCCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 4799999999986 67899999999876 456788888888 44443321110 00
Q ss_pred ---------------------------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceec
Q 019877 152 ---------------------------------------GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM 192 (334)
Q Consensus 152 ---------------------------------------gl~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~ 192 (334)
.+.++..|.+.++||++++.+++.+|+++|+++.++++.+.
T Consensus 73 h~~~~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~ 152 (298)
T cd04244 73 HIKAAKEAISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEA 152 (298)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHc
Confidence 01122334455679999999999999999999999987654
Q ss_pred c-----ccc--------hhHHHHHHHHHHhCCCEEEEeCCCC---------CcccChHHHHHHHHHHcCCcEEEEeecCC
Q 019877 193 S-----EVA--------EPYIRRRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVD 250 (334)
Q Consensus 193 ~-----~~~--------~~~i~~~i~~lL~~G~IPVi~g~~g---------~~~~~sD~lAa~lA~~l~Ad~LiilTDVd 250 (334)
. +.. ..+++..+..+++.|.|||++||.+ ..++++|++|+.+|.+|+|++|++|||||
T Consensus 153 ~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~ 232 (298)
T cd04244 153 GIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVD 232 (298)
T ss_pred ceeecCcccccccchhHHHHHHHHHHHHhhcCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCC
Confidence 2 111 1133444566788999999998622 23579999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 251 GVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 251 GVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
|||++||+.+|++++|++++|+|+.++ |.+++|+.|+.+|.++|||++|.|+++|+ ..||+|.
T Consensus 233 Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~p~---------~~GT~I~ 298 (298)
T cd04244 233 GVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPE---------APGTLIT 298 (298)
T ss_pred CCCCCCCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEeeCCCCC---------CCCCEeC
Confidence 999999999999999999999999875 88999999999999999999999999885 5699984
No 36
>PRK08210 aspartate kinase I; Reviewed
Probab=99.97 E-value=1.4e-30 Score=258.18 Aligned_cols=218 Identities=23% Similarity=0.335 Sum_probs=169.6
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-ch----HHHH-HHHc-cc--CCCCCChHHH
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GN----IFRG-ASAA-GN--SGLDRSSADY 160 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~----~~~g-~~~~-~~--~gl~~~~~d~ 160 (334)
|+++||||||++++++ +.+.+++++|+.+.+.|+++||||+| |+ .+.. ...+ .. ...+....+.
T Consensus 1 m~~iViK~GGs~l~~~-------~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~~~~~~~~~~~ 73 (403)
T PRK08210 1 MKIIVQKFGGTSVSTE-------ERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSEISKREQDL 73 (403)
T ss_pred CCeEEEeECCcccCCH-------HHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhccCCChHHHHH
Confidence 5689999999999873 56889999999999999998877733 33 2222 1111 10 1123344455
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEeceecc-----ccch---hHHH-HHHHHHHhCCCEEEEeCCC-----CC----
Q 019877 161 IGMLATVMNAIFLQATMESIGIPTRVQTAFRMS-----EVAE---PYIR-RRAVRHLEKGRVVIFAAGT-----GN---- 222 (334)
Q Consensus 161 ~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~-----~~~~---~~i~-~~i~~lL~~G~IPVi~g~~-----g~---- 222 (334)
+..+++..+..++..+|+++|+++.++++.+.. .... ..++ +.+..+++.|.|||++|+. |.
T Consensus 74 l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~~~l 153 (403)
T PRK08210 74 LMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDITTL 153 (403)
T ss_pred HHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCEEEe
Confidence 666788888888888899999999988865431 1111 1223 3456789999999999862 21
Q ss_pred cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEE
Q 019877 223 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVV 299 (334)
Q Consensus 223 ~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I 299 (334)
.++++|++|+++|.+|+|++|+|||||||||++||+.+|++++|++|+++|+.++ |.+++|++|+.+|.++++|++|
T Consensus 154 ~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i 233 (403)
T PRK08210 154 GRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRI 233 (403)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEE
Confidence 2358999999999999999999999999999999999999999999999998874 8899999999999999999999
Q ss_pred EcCCChhHHHHHHcCCCCceEEecC
Q 019877 300 FNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 300 ~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
.|.+++ ..||+|.+.
T Consensus 234 ~~~~~~----------~~gT~I~~~ 248 (403)
T PRK08210 234 RSTYSD----------SPGTLITSL 248 (403)
T ss_pred EecCCC----------cCCcEEEec
Confidence 998764 239999765
No 37
>PRK07431 aspartate kinase; Provisional
Probab=99.97 E-value=1.7e-30 Score=268.74 Aligned_cols=218 Identities=23% Similarity=0.332 Sum_probs=173.9
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHcccCCC--CC--ChHHHHHHH
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGNSGL--DR--SSADYIGML 164 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~~~~gl--~~--~~~d~~~~l 164 (334)
|+++|+||||+++.+ .+.+++++++|+.+++.|+++|||||| |.+.+.+..++. ++ +. ...+.+.+.
T Consensus 1 m~~iViKfGGss~~~-------~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~-~~t~~~~~~~~~~~ls~ 72 (587)
T PRK07431 1 MALIVQKFGGTSVGS-------VERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAK-EISSNPPRREMDMLLST 72 (587)
T ss_pred CCeEEEEECchhcCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHH-HhccCCCHHHHHHHHHH
Confidence 468999999999975 678999999999999999999999995 777666533321 11 11 122334445
Q ss_pred HHHHHHHHHHHHHHHcCCCeeEEeceecccc-----chh---HHH-HHHHHHHhCCCEEEEeCCCCC-----------cc
Q 019877 165 ATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AEP---YIR-RRAVRHLEKGRVVIFAAGTGN-----------PF 224 (334)
Q Consensus 165 a~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~-----~~~---~i~-~~i~~lL~~G~IPVi~g~~g~-----------~~ 224 (334)
++.++..+++.+|+++|+++.++++.+.... +.. .++ +.+.++++.|.|||++|+.|. .+
T Consensus 73 Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgr 152 (587)
T PRK07431 73 GEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGR 152 (587)
T ss_pred hHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCceeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCC
Confidence 6788888998889999999998887654211 111 122 356788999999999986331 25
Q ss_pred cChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEc
Q 019877 225 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFN 301 (334)
Q Consensus 225 ~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~n 301 (334)
+++|++|+++|.+|+||+|++||||||||++||+.+|++++|++|+++|+.++ |.+++|++|+..|.+.|||++|.|
T Consensus 153 ggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~ 232 (587)
T PRK07431 153 GGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRS 232 (587)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEec
Confidence 68999999999999999999999999999999999999999999999998774 888999999999999999999999
Q ss_pred CCChhHHHHHHcCCCCceEEecCC
Q 019877 302 LNQPGNIAKAIQGERVGTLIGGTW 325 (334)
Q Consensus 302 g~~~~~l~~~l~g~~~GT~I~~~~ 325 (334)
+.. +..||+|.+..
T Consensus 233 ~~~----------~~~GT~i~~~~ 246 (587)
T PRK07431 233 SWS----------DAPGTLVTSPP 246 (587)
T ss_pred CCC----------CCCCeEEEeCC
Confidence 872 23599998654
No 38
>PLN02512 acetylglutamate kinase
Probab=99.97 E-value=5.9e-30 Score=245.62 Aligned_cols=224 Identities=19% Similarity=0.289 Sum_probs=172.4
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCCCChH---H
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLDRSSA---D 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~~~~~---d 159 (334)
+.+++||||||++++++ +....++++|+.++..|.++|||||||++++.+ ...+.. |++.... +
T Consensus 46 ~~~tiVIKlGGs~i~d~-------~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~~G~rvT~~~~le 118 (309)
T PLN02512 46 RGKTVVVKYGGAAMKDP-------ELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFKNGLRVTDAETME 118 (309)
T ss_pred CCCeEEEEECCeeccCh-------hHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCCCCCcCCCHHHHH
Confidence 56899999999999874 355678899998889999999999999997663 233321 2222222 2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHcCCCeeEEeceecc-----------cc---ch-hHHH-HHHHHHHhCCCEEEEeCC---
Q 019877 160 YIG-MLATVMNAIFLQATMESIGIPTRVQTAFRMS-----------EV---AE-PYIR-RRAVRHLEKGRVVIFAAG--- 219 (334)
Q Consensus 160 ~~~-~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~-----------~~---~~-~~i~-~~i~~lL~~G~IPVi~g~--- 219 (334)
... .++..+|..+++. |.++|+++.++++.+.. +. ++ ..++ +.+..+|+.|.|||++|.
T Consensus 119 i~~~~l~g~ln~~lv~~-L~~~Gv~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d 197 (309)
T PLN02512 119 VVEMVLVGKVNKSLVSL-INKAGGTAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAAD 197 (309)
T ss_pred HHHHHHhhHHHHHHHHH-HHHcCCCeEEeehhhCCEEEEEEcCcCccccccceeeecCHHHHHHHHhCCCEEEEeCceEC
Confidence 222 2456788888874 99999999988776531 11 11 1233 345789999999999984
Q ss_pred -CCC-cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CCCcchHHHHHHH
Q 019877 220 -TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLC 290 (334)
Q Consensus 220 -~g~-~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~~v~k~~Aa~~a 290 (334)
.|. ..+++|.+|+++|.+|+||+|+|+|||||||+++| +++++|++|+++|+.++ |.|..|++++..+
T Consensus 198 ~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a 274 (309)
T PLN02512 198 EDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRS 274 (309)
T ss_pred CCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence 222 34699999999999999999999999999998764 34789999999887653 4578899999999
Q ss_pred HhCCCc-EEEEcCCChhHH-HHHHcCCCCceEEec
Q 019877 291 QENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGG 323 (334)
Q Consensus 291 ~~~Gi~-V~I~ng~~~~~l-~~~l~g~~~GT~I~~ 323 (334)
.+.|++ ++|++|..|+.+ .+++.++..||+|.+
T Consensus 275 ~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~ 309 (309)
T PLN02512 275 LAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMITG 309 (309)
T ss_pred HHcCCCEEEEecCCCCChHHHHHhcCCCCeeEEeC
Confidence 999996 999999999886 578988889999963
No 39
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.97 E-value=3.4e-30 Score=244.64 Aligned_cols=223 Identities=16% Similarity=0.241 Sum_probs=172.2
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHccc-----CCCCCChH---H
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDRSSA---D 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~-----~gl~~~~~---d 159 (334)
+.+++|||+||+++.++ ...+.++++|+.|+..|.++|||||||++++.. ...+. .|++.+.. +
T Consensus 22 ~~~~~VIk~gG~~~~~~-------~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~rvT~~~~l~ 94 (284)
T CHL00202 22 RGRIMVIKYGGAAMKNL-------ILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWNGIRVTDKVTME 94 (284)
T ss_pred cCCeEEEEEChHHhcCc-------chHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeECCcccCCHHHHH
Confidence 45899999999998753 245688999999999999999999999997653 23332 13333332 2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHcCCCeeEEeceeccc----------c---ch-hHHH-HHHHHHHhCCCEEEEeCC----
Q 019877 160 YIG-MLATVMNAIFLQATMESIGIPTRVQTAFRMSE----------V---AE-PYIR-RRAVRHLEKGRVVIFAAG---- 219 (334)
Q Consensus 160 ~~~-~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~----------~---~~-~~i~-~~i~~lL~~G~IPVi~g~---- 219 (334)
... +++..+|..+++. |.++|++++++++.+..- . ++ ..++ +.+..+|+.|.|||+++.
T Consensus 95 ~~~~~l~g~ln~~lv~~-L~~~Gv~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~~~~ 173 (284)
T CHL00202 95 IVEMVLAGKVNKDLVGS-INANGGKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADH 173 (284)
T ss_pred HHHHHHhhHHHHHHHHH-HHhCCCCeeeeeeccCCEEEEEeCCCcccccceeEEecCHHHHHHHHHCCCEEEECCCccCC
Confidence 233 3567789888875 899999999888765321 0 11 1233 346789999999999973
Q ss_pred CCCc-ccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CCCcchHHHHHHHH
Q 019877 220 TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQ 291 (334)
Q Consensus 220 ~g~~-~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~~v~k~~Aa~~a~ 291 (334)
.|.. .+++|++|+++|.+++||+|+|+|||||||+++ .+| .++|++++++|+.++ |.|..|+++|..+.
T Consensus 174 ~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~--~d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~ 250 (284)
T CHL00202 174 DGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADI--NDP-NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRAL 250 (284)
T ss_pred CCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCC--CCC-CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 2333 469999999999999999999999999999853 123 479999999887653 45788999999999
Q ss_pred hCCCc-EEEEcCCChhH-HHHHHcCCCCceEEe
Q 019877 292 ENNIP-VVVFNLNQPGN-IAKAIQGERVGTLIG 322 (334)
Q Consensus 292 ~~Gi~-V~I~ng~~~~~-l~~~l~g~~~GT~I~ 322 (334)
++|++ ++|++|++|+. +.+++++++.||+|.
T Consensus 251 ~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 251 AQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred HcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 99997 89999999987 589999999999995
No 40
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.97 E-value=3e-30 Score=247.95 Aligned_cols=226 Identities=20% Similarity=0.289 Sum_probs=161.8
Q ss_pred CCeEEEEeCCccccCCC-CCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccC-C------CCCChHHH-
Q 019877 90 WQRVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNS-G------LDRSSADY- 160 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~-~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~-g------l~~~~~d~- 160 (334)
++++||||||++|++++ +.+++.+.+.+++++|+.+++.|+++|||||||+++. +...+.. . +.....+.
T Consensus 2 ~~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (314)
T PRK12353 2 MKKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVG-NILLAQEAAASEKNKVPAMPLDVC 80 (314)
T ss_pred CcEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhC-HHHhcCccccccCCCCCCchhHHH
Confidence 68999999999999874 4569999999999999999999999999999988752 2222211 1 01111121
Q ss_pred ----HHHHHHHHHHHHHHHHHHHcCCCeeE-----Eeceeccc--c-------------------------------chh
Q 019877 161 ----IGMLATVMNAIFLQATMESIGIPTRV-----QTAFRMSE--V-------------------------------AEP 198 (334)
Q Consensus 161 ----~~~la~~~n~~Lv~~~L~~~Gi~a~~-----l~~~~~~~--~-------------------------------~~~ 198 (334)
.++++..++..+. ..|..+|+.... +...+..+ + ++.
T Consensus 81 ~a~~qg~l~~~l~~~~~-~~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (314)
T PRK12353 81 GAMSQGYIGYHLQNALR-NELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAGRG 159 (314)
T ss_pred HHHHhHHHHHHHHHHHH-HHHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCCce
Confidence 1223333333333 347778874321 11111111 0 001
Q ss_pred H------------HH-HHHHHHHhCCCEEEEeCCCCCc-------------ccChHHHHHHHHHHcCCcEEEEeecCCcc
Q 019877 199 Y------------IR-RRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGV 252 (334)
Q Consensus 199 ~------------i~-~~i~~lL~~G~IPVi~g~~g~~-------------~~~sD~lAa~lA~~l~Ad~LiilTDVdGV 252 (334)
+ ++ +.+..+|++|.|||++|+.|.+ ++|+|.+|+++|.+++||+|+++||||||
T Consensus 160 ~r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGV 239 (314)
T PRK12353 160 YRRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKV 239 (314)
T ss_pred eEeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccc
Confidence 2 22 3356789999999999754322 47889999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccccHHHHhhC--------CCCcchHHHHHHHH--hCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 253 YDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 253 yt~dP~~~p~aklI~~Is~~e~~~~--------g~~v~k~~Aa~~a~--~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
|+++| +|++++|+++++.++.++ |.|.+|+++|..+. +.|++++|++ ++.+.++++|+ .||+|.
T Consensus 240 y~~~~--~~~a~~i~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~~l~g~-~GT~i~ 313 (314)
T PRK12353 240 YINFG--KPNQKKLDEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKEALEGK-AGTVIV 313 (314)
T ss_pred cCCCC--CCCCeECcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHHHhCCC-CCeEec
Confidence 99766 488999999998877542 45788999998777 6789999997 68888999998 899996
Q ss_pred c
Q 019877 323 G 323 (334)
Q Consensus 323 ~ 323 (334)
+
T Consensus 314 ~ 314 (314)
T PRK12353 314 K 314 (314)
T ss_pred C
Confidence 4
No 41
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.97 E-value=2.5e-30 Score=245.22 Aligned_cols=221 Identities=22% Similarity=0.290 Sum_probs=171.0
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHH-HcccC-----CCCCChH---H
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGNS-----GLDRSSA---D 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~-~~~~~-----gl~~~~~---d 159 (334)
.++++||||||++|+++ +.+..++++|+.+++.|.++|||||+|++++... ..+.. ++..... +
T Consensus 22 ~~~~iViK~GGs~l~~~-------~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g~~~t~~~~l~ 94 (283)
T PRK00942 22 MGKTIVIKYGGNAMTDE-------ELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDAETME 94 (283)
T ss_pred cCCeEEEEEChHHhcCc-------chHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCCEecCCHHHHH
Confidence 46799999999999875 3577889999999999999999999999977632 23321 2222221 2
Q ss_pred HHHH-HHHHHHHHHHHHHHHHcCCCeeEEeceecccc--------------ch-hHHH-HHHHHHHhCCCEEEEeCC---
Q 019877 160 YIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEV--------------AE-PYIR-RRAVRHLEKGRVVIFAAG--- 219 (334)
Q Consensus 160 ~~~~-la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~--------------~~-~~i~-~~i~~lL~~G~IPVi~g~--- 219 (334)
..++ ++..+|..+++ +|.++|+++..+++.+..-+ +. ..++ +.+..+|++|.|||+++.
T Consensus 95 ~~~~a~~G~l~~~i~~-~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~~~~ 173 (283)
T PRK00942 95 VVEMVLAGKVNKELVS-LINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPIGVG 173 (283)
T ss_pred HHHHHHcCchHHHHHH-HHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcCcEEC
Confidence 2222 33468877775 59999999987776543110 00 1233 346789999999999973
Q ss_pred -C-CCcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CCCcchHHHHHHH
Q 019877 220 -T-GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLC 290 (334)
Q Consensus 220 -~-g~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~~v~k~~Aa~~a 290 (334)
+ +..++++|.+|+++|.+|+|++|+|+|||||||++ ++++|++|+++|+.++ |.|..|+++|..+
T Consensus 174 ~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~ 247 (283)
T PRK00942 174 EDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAALDA 247 (283)
T ss_pred CCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 2 23468999999999999999999999999999986 3789999999887653 4567899999999
Q ss_pred HhCCC-cEEEEcCCChhH-HHHHHcCCCCceEEec
Q 019877 291 QENNI-PVVVFNLNQPGN-IAKAIQGERVGTLIGG 323 (334)
Q Consensus 291 ~~~Gi-~V~I~ng~~~~~-l~~~l~g~~~GT~I~~ 323 (334)
.+.|+ +|+|+|+++|++ |.++++|+.+||+|.+
T Consensus 248 ~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~ 282 (283)
T PRK00942 248 ARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP 282 (283)
T ss_pred HHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence 99998 599999999999 8899999999999976
No 42
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.97 E-value=7.7e-30 Score=241.47 Aligned_cols=222 Identities=21% Similarity=0.306 Sum_probs=169.8
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCCCChH---H
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLDRSSA---D 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~~~~~---d 159 (334)
+.+++||||||++++++ +.+.+++++|+.+++.|.++|||||||++++.+ ...+.. ++..... +
T Consensus 13 ~~~~~ViKlGGs~i~~~-------~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~~~~~ 85 (279)
T cd04250 13 RGKTVVIKYGGNAMKDE-------ELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEETME 85 (279)
T ss_pred cCCEEEEEEChHHhcCc-------cHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCHHHHH
Confidence 45799999999999874 356778899998888999999999999987653 233321 2222222 2
Q ss_pred HHHH-HHHHHHHHHHHHHHHHcCCCeeEEeceecccc-------------------ch-hHHH-HHHHHHHhCCCEEEEe
Q 019877 160 YIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEV-------------------AE-PYIR-RRAVRHLEKGRVVIFA 217 (334)
Q Consensus 160 ~~~~-la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~-------------------~~-~~i~-~~i~~lL~~G~IPVi~ 217 (334)
...+ ++..+|..+++ +|.++|+++.++++.+..-+ +. ..++ +.+.++|+.|.|||++
T Consensus 86 ~~~~~~~g~ln~~l~~-~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~ 164 (279)
T cd04250 86 IVEMVLVGKVNKEIVS-LINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIA 164 (279)
T ss_pred HHHHHHcCchHHHHHH-HHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEc
Confidence 2222 32478888765 59999999998887643100 00 0123 3457899999999999
Q ss_pred CC----CCC-cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CCCcchHH
Q 019877 218 AG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMT 285 (334)
Q Consensus 218 g~----~g~-~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~~v~k~~ 285 (334)
+. .|. ..+++|.+|+++|.+++||+|+|+|||||||++||+ ++++|++++++|+.++ |.|..|++
T Consensus 165 ~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~ 241 (279)
T cd04250 165 PVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVE 241 (279)
T ss_pred CCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHH
Confidence 84 122 347999999999999999999999999999999883 3799999999887653 45778999
Q ss_pred HHHHHHhCCCc-EEEEcCCChhH-HHHHHcCCCCceEE
Q 019877 286 AITLCQENNIP-VVVFNLNQPGN-IAKAIQGERVGTLI 321 (334)
Q Consensus 286 Aa~~a~~~Gi~-V~I~ng~~~~~-l~~~l~g~~~GT~I 321 (334)
+|..+.++|++ |+|+|+++|+. +.+++++++.||+|
T Consensus 242 ~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 242 ACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred HHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 99999999986 99999999996 58899999999986
No 43
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.97 E-value=1.6e-29 Score=240.85 Aligned_cols=215 Identities=24% Similarity=0.250 Sum_probs=166.8
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHH-HH---ccc----------------
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGA-SA---AGN---------------- 150 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~-~~---~~~---------------- 150 (334)
++|.||||+++.+ .+.++++++.|....+.+.++|+|.++ |.+.+.. .. +..
T Consensus 1 ~~V~KFGGtSv~~-------~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~l~~i~~~~~~ 73 (295)
T cd04259 1 WVVLKFGGTSVSS-------RARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLN 73 (295)
T ss_pred CEEEEeCccccCC-------HHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 4699999999986 568999999888655667778888877 3333221 10 000
Q ss_pred ------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceecc----ccc
Q 019877 151 ------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVA 196 (334)
Q Consensus 151 ------------------------------~gl~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~----~~~ 196 (334)
..+..+..|.+.++|+++++.+++.+|++.|+++.++++++.. +.+
T Consensus 74 ~~~~L~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~ 153 (295)
T cd04259 74 LAEQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLG 153 (295)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeeccccc
Confidence 0012233455667899999999999999999999988875541 110
Q ss_pred ---hhH---------HHHHHHHHHhC-CCEEEEeCCCC---------CcccChHHHHHHHHHHcCCcEEEEeecCCcccc
Q 019877 197 ---EPY---------IRRRAVRHLEK-GRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD 254 (334)
Q Consensus 197 ---~~~---------i~~~i~~lL~~-G~IPVi~g~~g---------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt 254 (334)
..| ....+.+.++. +.|||++||.| +.+++||++|+.+|.+++||+|++||||||||+
T Consensus 154 ~~~~~~~~a~v~~~~~~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt 233 (295)
T cd04259 154 GETMNYLSARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFT 233 (295)
T ss_pred ccccccccceehhhhhHHHHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 011 12345555655 67999999733 346899999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 255 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 255 ~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
+||+.+|++++|++++|+|+.++ |.+++|++|+.+|.++|||++|.|+++|+ ..||+|.
T Consensus 234 ~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~---------~~GT~I~ 295 (295)
T cd04259 234 ANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPE---------LSGTLIT 295 (295)
T ss_pred CCCCCCCCCeEeceeCHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCC---------CCCcEeC
Confidence 99999999999999999999765 88999999999999999999999998875 5699984
No 44
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.97 E-value=3.8e-29 Score=263.34 Aligned_cols=232 Identities=22% Similarity=0.297 Sum_probs=176.7
Q ss_pred CCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCC--------C--CCCh
Q 019877 88 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSG--------L--DRSS 157 (334)
Q Consensus 88 ~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~g--------l--~~~~ 157 (334)
.+++++||||||++|++. .+.++.+++.+++++|+++++.|+++|||++| +.+-+...++... + +...
T Consensus 13 ~~~~~iViK~G~ssl~~~-~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSg-a~~~g~~~l~~~~~~~~~~~~~~~~~~~ 90 (718)
T PLN02418 13 RDVKRVVIKVGTAVVTRD-DGRLALGRLGALCEQIKELNSDGYEVILVSSG-AVGVGRQRLRYRRLVNSSFADLQKPQME 90 (718)
T ss_pred hhCCEEEEEeCCCeecCC-CCCccHHHHHHHHHHHHHHHHCCCEEEEEecc-hHHHHHHHHhhhhhhhcccccCCCCcch
Confidence 467899999999999975 35688999999999999999999999999864 3333333332111 1 2222
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHcCCCeeEEeceeccccch--hHH--HHHHHHHHhCCCEEEEeCCC-----CC---
Q 019877 158 ADYIGMLATVMNAIF---LQATMESIGIPTRVQTAFRMSEVAE--PYI--RRRAVRHLEKGRVVIFAAGT-----GN--- 222 (334)
Q Consensus 158 ~d~~~~la~~~n~~L---v~~~L~~~Gi~a~~l~~~~~~~~~~--~~i--~~~i~~lL~~G~IPVi~g~~-----g~--- 222 (334)
.+. +++++.+|..+ ++.+|+++|+++. +...+-.++.. .+. ...+..+|+.|.|||+++++ +.
T Consensus 91 ~~~-qa~aa~Gq~~l~~~~~~~f~~~g~~~~-qillT~~~~~~~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~ 168 (718)
T PLN02418 91 LDG-KACAAVGQSELMALYDTLFSQLDVTAS-QLLVTDSDFRDPDFRKQLSETVESLLDLRVIPIFNENDAVSTRRAPYE 168 (718)
T ss_pred HHH-HHHHHhhHHHHHHHHHHHHHHcCCeEE-EEEecHhHhcchhHhHhHHHHHHHHHHCCCEEEEcCCCCccccccccc
Confidence 332 56666666655 4556999999775 33333333322 222 24467899999999999842 11
Q ss_pred ----cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhh-----------CCCCcchHHHH
Q 019877 223 ----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS-----------KDLSVMDMTAI 287 (334)
Q Consensus 223 ----~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~-----------~g~~v~k~~Aa 287 (334)
.++|||++|+++|.+++||+|+|+|||||||++||+ +|++++|++++..+... .|.|..|++|+
T Consensus 169 ~~~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa 247 (718)
T PLN02418 169 DSSGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAA 247 (718)
T ss_pred cccCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHH
Confidence 356899999999999999999999999999999997 58999999987544211 14577899999
Q ss_pred HHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 288 TLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 288 ~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
..+.++|++++|+||++|+.|.++++|+.+||+|.+.
T Consensus 248 ~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 284 (718)
T PLN02418 248 VNAASAGIPVVITSGYALDNIRKVLRGERVGTLFHQD 284 (718)
T ss_pred HHHHHCCCcEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence 9999999999999999999999999999999999763
No 45
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.97 E-value=4.8e-29 Score=236.71 Aligned_cols=212 Identities=21% Similarity=0.226 Sum_probs=166.1
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-c-------hHHHHHHHc----ccC--------
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-G-------NIFRGASAA----GNS-------- 151 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G-------~~~~g~~~~----~~~-------- 151 (334)
+.|.||||+++.+ .+.++++++.|.. .+.+++||.++ | .+.+....+ ...
T Consensus 1 m~V~KFGGtSv~~-------~~~i~~v~~ii~~---~~~~~vvVvSA~~~~~~~~~~vTd~L~~~~~~~~~~~~~~~~~~ 70 (288)
T cd04245 1 MKVVKFGGSSLAS-------AEQFQKVKAIVKA---DPERKIVVVSAPGKRFKDDTKVTDLLILYAEAVLAGEDTESIFE 70 (288)
T ss_pred CEEEEECcCccCC-------HHHHHHHHHHHHh---cCCCEEEEEcCCCCCCCchhhHHHHHHHHHHHHhcCcchHHHHH
Confidence 3699999999986 5688888888864 34678888887 4 233332110 000
Q ss_pred -----------------------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceeccc--
Q 019877 152 -----------------------------------GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE-- 194 (334)
Q Consensus 152 -----------------------------------gl~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~-- 194 (334)
....+..|.+...|+++++.+++.+|++.|+++.+++++++.-
T Consensus 71 ~i~~~h~~~~~~L~~~~~~~~~i~~~~~~l~~~~~~~~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t 150 (288)
T cd04245 71 AIVDRYAEIADELGLPMSILEEIAEILENLANLDYANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVV 150 (288)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceee
Confidence 0112233556678999999999999999999999998766521
Q ss_pred ---cchh-H---HHHHHHHHHhCCCEEEEeCCCCC---------cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCC
Q 019877 195 ---VAEP-Y---IRRRAVRHLEKGRVVIFAAGTGN---------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR 258 (334)
Q Consensus 195 ---~~~~-~---i~~~i~~lL~~G~IPVi~g~~g~---------~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~ 258 (334)
.+.. . ..+.+.+.++.+.|||++||.|. +++++|+.|+.+|.+++|+++.+||||||||++||+
T Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr 230 (288)
T cd04245 151 TDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPR 230 (288)
T ss_pred cCCccccccchhhHHHHHHHHhCCCEEEEeCccccCCCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCC
Confidence 1111 1 12446677888999999998542 467999999999999999999999999999999999
Q ss_pred CCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 259 RNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 259 ~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
.+|+|+.+++|+|+|+.++ |.+++|+.|+.+|.+.+||++|.|.++|+ ..||+|.
T Consensus 231 ~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~Ipi~v~n~~~p~---------~~GT~I~ 288 (288)
T cd04245 231 IVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHPE---------APGTLIV 288 (288)
T ss_pred CCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCCCcEEEeeCCCCC---------CCCceeC
Confidence 9999999999999999884 89999999999999999999999998885 4699984
No 46
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.97 E-value=9e-29 Score=235.95 Aligned_cols=224 Identities=26% Similarity=0.330 Sum_probs=169.2
Q ss_pred eEEEEeCCccccCCC---CCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHH----HHHHHcc----cCCCCCChHHH
Q 019877 92 RVLLKVSGEALAGDH---TQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF----RGASAAG----NSGLDRSSADY 160 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~---~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~----~g~~~~~----~~gl~~~~~d~ 160 (334)
++||||||++|..++ ....+.+.++..+++|+.+.+.|++++||||+|++. ++..... ...++....+.
T Consensus 1 rivialgGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~~ 80 (308)
T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMS 80 (308)
T ss_pred CEEEEecHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcchh
Confidence 589999999998754 356888999999999999999999999999999764 3322221 12455555677
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEeceecccc--------------chh------------------------H---
Q 019877 161 IGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV--------------AEP------------------------Y--- 199 (334)
Q Consensus 161 ~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~--------------~~~------------------------~--- 199 (334)
.++++.+++..|-. .|.+.|++....+..+...+ +.. |
T Consensus 81 ~G~ig~~~~~al~~-~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrv 159 (308)
T cd04235 81 QGMIGYMLQQALDN-ELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRV 159 (308)
T ss_pred hHHHHHHHHHHHHH-HHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceee
Confidence 88899888655544 58889987754444321100 000 1
Q ss_pred ---------HHHH-HHHHHhCCCEEEEeCCCCCcc-------------cChHHHHHHHHHHcCCcEEEEeecCCccccCC
Q 019877 200 ---------IRRR-AVRHLEKGRVVIFAAGTGNPF-------------FTTDTAAALRCAEINAEVVLKATNVDGVYDDN 256 (334)
Q Consensus 200 ---------i~~~-i~~lL~~G~IPVi~g~~g~~~-------------~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~d 256 (334)
++.+ +..+|++|+|||++|+.|+++ +|+|++|+++|.+++||+|+++|||||||+++
T Consensus 160 V~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~ 239 (308)
T cd04235 160 VPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINF 239 (308)
T ss_pred eCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCC
Confidence 1223 456899999999998765443 56799999999999999999999999999965
Q ss_pred CCCCCCCcccccccHHHHhhC--------CCCcchHHHHHHHHhC-CCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 257 PRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 257 P~~~p~aklI~~Is~~e~~~~--------g~~v~k~~Aa~~a~~~-Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
+ +|++++|++++++|+.++ |.|.+|+++|..+.+. +.+++|++ ++.+.++|+|+ .||+|.
T Consensus 240 ~--~pda~~i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i~~aL~G~-~GT~I~ 308 (308)
T cd04235 240 G--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITS---LENAEAALEGK-AGTVIV 308 (308)
T ss_pred C--CCCCeEcCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence 4 588999999999887643 4578899999766665 46788876 67899999998 799983
No 47
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.97 E-value=6.1e-29 Score=249.14 Aligned_cols=217 Identities=24% Similarity=0.320 Sum_probs=171.0
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHccc---CCC--------------
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGN---SGL-------------- 153 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~~~---~gl-------------- 153 (334)
++|+||||+++.+ .+.++++++.|....+.|+++|+|||| |.+.+....+.. .+.
T Consensus 2 ~~V~KFGGssv~~-------~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (441)
T TIGR00657 2 LIVQKFGGTSVGN-------AERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIE 74 (441)
T ss_pred CEEEEeCcccCCC-------HHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 4799999999986 578999999999887888899999988 445444322210 000
Q ss_pred --------------------------CCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceecc-----ccch----h
Q 019877 154 --------------------------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS-----EVAE----P 198 (334)
Q Consensus 154 --------------------------~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~-----~~~~----~ 198 (334)
..+..|.+.++||++++.++..+|+++|++++.+++.+.. ...+ .
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~ 154 (441)
T TIGR00657 75 ILERLIPQAIAEELKRLLDAELVLEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVII 154 (441)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecH
Confidence 0112233445688999999999999999999988876532 1111 1
Q ss_pred HHH-HHHHHHHhCCCEEEEeCCC-----CC----cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCccccc
Q 019877 199 YIR-RRAVRHLEKGRVVIFAAGT-----GN----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 268 (334)
Q Consensus 199 ~i~-~~i~~lL~~G~IPVi~g~~-----g~----~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~ 268 (334)
.++ +.+..+++.|.|||++|+. |. .++++|++|+++|.+++|++|++||||||||++||+.+|+++++++
T Consensus 155 ~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~ 234 (441)
T TIGR00657 155 EILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDE 234 (441)
T ss_pred hhhHHHHHHHHhcCCEEEEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCc
Confidence 122 3467789999999999862 21 2468999999999999999999999999999999999999999999
Q ss_pred ccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 269 LTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 269 Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
++|+|+.++ |.+++|++|+.+|.+.++|++|.|+++|+ ..||+|.+.
T Consensus 235 is~~ea~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~---------~~GT~I~~~ 284 (441)
T TIGR00657 235 ISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNPE---------APGTLIVAS 284 (441)
T ss_pred cCHHHHHHHHhcCCcccCHHHHHHHHHcCCeEEEecCCCCC---------CCceEEEeC
Confidence 999998774 78999999999999999999999998873 459999865
No 48
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.97 E-value=1.6e-29 Score=236.30 Aligned_cols=215 Identities=24% Similarity=0.301 Sum_probs=164.6
Q ss_pred EEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCCC---ChHHHHHH
Q 019877 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLDR---SSADYIGM 163 (334)
Q Consensus 93 iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~~---~~~d~~~~ 163 (334)
+||||||++++++ +.+.+++++|+.+++.|.++|||||+|++.+.. ...+.. +++. ...+...+
T Consensus 1 ~ViKlGGs~l~~~-------~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~ 73 (256)
T cd04238 1 VVIKYGGSAMKDE-------ELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEM 73 (256)
T ss_pred CEEEEChHHhcCc-------cHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHH
Confidence 5899999999874 367889999999999999999999999997653 233321 2221 11233333
Q ss_pred -HHHHHHHHHHHHHHHHcCCCeeEEeceecccc---------------ch-hHHH-HHHHHHHhCCCEEEEeCC----C-
Q 019877 164 -LATVMNAIFLQATMESIGIPTRVQTAFRMSEV---------------AE-PYIR-RRAVRHLEKGRVVIFAAG----T- 220 (334)
Q Consensus 164 -la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~---------------~~-~~i~-~~i~~lL~~G~IPVi~g~----~- 220 (334)
++..+|..+++ +|.++|+++.++++.+..-+ ++ ..++ +.+..+|++|.|||+++. .
T Consensus 74 a~~g~ln~~i~~-~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~~~~~~g 152 (256)
T cd04238 74 VLAGKVNKELVS-LLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDG 152 (256)
T ss_pred HHcCchHHHHHH-HHHhCCCCCCCcccccCCEEEEEECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCcEECCCC
Confidence 32578888755 59999999988777653111 00 0123 346789999999999973 1
Q ss_pred CCcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CCCcchHHHHHHHHhC
Q 019877 221 GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQEN 293 (334)
Q Consensus 221 g~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~~v~k~~Aa~~a~~~ 293 (334)
+..++++|.+|+++|.+|+||+|+|+|||||||++ ++++|++++++|+.++ |.|..|+++|..+.+.
T Consensus 153 ~~~~~~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~ 226 (256)
T cd04238 153 ETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEG 226 (256)
T ss_pred cEEEECHHHHHHHHHHHcCCCEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHh
Confidence 23478999999999999999999999999999986 2689999999887543 4577899999999998
Q ss_pred CC-cEEEEcCCChhHHHHHHcC-CCCceEE
Q 019877 294 NI-PVVVFNLNQPGNIAKAIQG-ERVGTLI 321 (334)
Q Consensus 294 Gi-~V~I~ng~~~~~l~~~l~g-~~~GT~I 321 (334)
|+ +++|+|+++|++|.++|.| ++.||+|
T Consensus 227 g~~~v~I~~g~~~~~l~~~l~~~~~~GT~i 256 (256)
T cd04238 227 GVRKVHIIDGRVPHSLLLELFTDEGIGTMI 256 (256)
T ss_pred CCCEEEEeCCCCCcHHHHHHhcCCCCCCCC
Confidence 87 5999999999999998887 6689976
No 49
>PRK06291 aspartate kinase; Provisional
Probab=99.97 E-value=6.7e-29 Score=250.42 Aligned_cols=217 Identities=25% Similarity=0.314 Sum_probs=172.2
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHH----ccc-C--------------
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASA----AGN-S-------------- 151 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~----~~~-~-------------- 151 (334)
++|.||||+++.+ .+.++++++.|.+..+.+.++|+|.++ |.+.+.... +.. .
T Consensus 2 ~~V~KFGGtSv~~-------~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~ 74 (465)
T PRK06291 2 RLVMKFGGTSVGD-------GERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVRDIAKVKDFIADLRE 74 (465)
T ss_pred cEEEEeCcccCCC-------HHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 4799999999986 678999999998776677888888888 444333211 000 0
Q ss_pred -----------------------------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEece
Q 019877 152 -----------------------------------------GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 190 (334)
Q Consensus 152 -----------------------------------------gl~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~ 190 (334)
.+..+..|.+.++||.+++.|++.+|+++|+++.+++++
T Consensus 75 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~ 154 (465)
T PRK06291 75 RHYKAIEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGG 154 (465)
T ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchH
Confidence 011233455667899999999999999999999999876
Q ss_pred ecc-----ccc--------hhHHHHHHHHHHhCCCEEEEeCCC-----C----CcccChHHHHHHHHHHcCCcEEEEeec
Q 019877 191 RMS-----EVA--------EPYIRRRAVRHLEKGRVVIFAAGT-----G----NPFFTTDTAAALRCAEINAEVVLKATN 248 (334)
Q Consensus 191 ~~~-----~~~--------~~~i~~~i~~lL~~G~IPVi~g~~-----g----~~~~~sD~lAa~lA~~l~Ad~LiilTD 248 (334)
+.. ..+ ..++...+..+++.|.|||++|+. | ..++++|++|+++|.+|+|++|++|||
T Consensus 155 ~~~i~t~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~td 234 (465)
T PRK06291 155 EAGIITDSNFGNARPLPKTYERVKERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTD 234 (465)
T ss_pred HCcEEecCCCCceeechhhHHHHHHHHHHHhhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEEC
Confidence 641 111 123334456788999999999862 2 235799999999999999999999999
Q ss_pred CCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 249 VDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 249 VdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
|||||++||+.+|+++++++++|+|+.++ |.+++|++|+.+|.++|||++|.|+++|+ ..||+|...
T Consensus 235 V~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~---------~~gt~i~~~ 304 (465)
T PRK06291 235 VDGVMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPE---------FPGTLITSD 304 (465)
T ss_pred CCCCCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCC---------CCceEEEec
Confidence 99999999999999999999999998875 88999999999999999999999999874 569999754
No 50
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.97 E-value=8.2e-29 Score=236.00 Aligned_cols=214 Identities=26% Similarity=0.306 Sum_probs=165.0
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHc-cc--C----------------
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-GN--S---------------- 151 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~-~~--~---------------- 151 (334)
+.|+||||+++.+ .+.++++++.|.... ++.++|+|.++ |.+.+....+ .. .
T Consensus 1 m~V~KFGGtSv~~-------~~~i~~v~~iI~~~~-~~~~~vvVvSA~~gvTd~L~~~~~~~~~~~~~~~~~l~~i~~~h 72 (294)
T cd04257 1 MKVLKFGGTSLAN-------AERIRRVADIILNAA-KQEQVAVVVSAPGKVTDLLLELAELASSGDDAYEDILQELESKH 72 (294)
T ss_pred CEEEEeCccccCC-------HHHHHHHHHHHHhhc-cCCCEEEEEcCCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 3699999999986 568999999888654 45678888887 4443332111 00 0
Q ss_pred --------------------------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceecc
Q 019877 152 --------------------------------------GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS 193 (334)
Q Consensus 152 --------------------------------------gl~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~ 193 (334)
.+.++..|.+.+.||++++.+++.+|+++|+++.++++++..
T Consensus 73 ~~~~~~l~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i 152 (294)
T cd04257 73 LDLITELLSGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDARELI 152 (294)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHee
Confidence 011222344455789999999999999999999988876532
Q ss_pred c----cch-----hHHHHHHHHHHhC-CCEEEEeCCCC---------CcccChHHHHHHHHHHcCCcEEEEeecCCcccc
Q 019877 194 E----VAE-----PYIRRRAVRHLEK-GRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD 254 (334)
Q Consensus 194 ~----~~~-----~~i~~~i~~lL~~-G~IPVi~g~~g---------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt 254 (334)
. ... ....+.+.++++. +.|||++||.+ ..++++|++|+++|.+++||+|++||||||||+
T Consensus 153 ~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt 232 (294)
T cd04257 153 VTDGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYS 232 (294)
T ss_pred EecCCCCceEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCC
Confidence 1 111 1123345555665 89999999743 245889999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 255 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 255 ~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
+||+.+|+|++|++|+|+|+.++ |.++++++|..+|.++|||++|.|+++|+ ..||+|.
T Consensus 233 ~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ipi~i~~~~~p~---------~~GT~I~ 294 (294)
T cd04257 233 ADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPE---------APGTLIS 294 (294)
T ss_pred CCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCCEEEeeCCCCC---------CCCCEeC
Confidence 99999999999999999998774 88899999999999999999999999875 5699884
No 51
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.96 E-value=1.3e-28 Score=235.72 Aligned_cols=222 Identities=22% Similarity=0.330 Sum_probs=156.3
Q ss_pred CeEEEEeCCccccCCC-CC--CCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCC----CCCChHHHHHH
Q 019877 91 QRVLLKVSGEALAGDH-TQ--NIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSG----LDRSSADYIGM 163 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~-~~--~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~g----l~~~~~d~~~~ 163 (334)
|+||||+||++|..++ .. +++.+.++.++++|+.|++.|+++|||||+|++... ..++... ++..+. ++
T Consensus 1 ~riViklGgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~-~~l~~~~~~~~~~~~p~---~~ 76 (310)
T TIGR00746 1 KRVVVALGGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGN-LLLQNQAADSEVPAMPL---DV 76 (310)
T ss_pred CeEEEEECHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHH-HHhccccccccCCCCcc---hH
Confidence 6899999999999753 22 466889999999999999999999999999998744 2232111 121222 33
Q ss_pred HHHHHHHHH---HHHH----HHHcCCCeeE-----Eeceeccc--cch---h----------------------------
Q 019877 164 LATVMNAIF---LQAT----MESIGIPTRV-----QTAFRMSE--VAE---P---------------------------- 198 (334)
Q Consensus 164 la~~~n~~L---v~~~----L~~~Gi~a~~-----l~~~~~~~--~~~---~---------------------------- 198 (334)
++++.|..| ++.+ |.++|++... +...+..| +.+ +
T Consensus 77 ~~A~~qg~lg~~~~~~l~~~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~ 156 (310)
T TIGR00746 77 LGAMSQGMIGYMLQQALNNELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRG 156 (310)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCc
Confidence 444434322 3333 4488876532 22222222 100 0
Q ss_pred ------------HHH-HHHHHHHhCCCEEEEeCCCCCc-------------ccChHHHHHHHHHHcCCcEEEEeecCCcc
Q 019877 199 ------------YIR-RRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGV 252 (334)
Q Consensus 199 ------------~i~-~~i~~lL~~G~IPVi~g~~g~~-------------~~~sD~lAa~lA~~l~Ad~LiilTDVdGV 252 (334)
.++ +.+..+|++|.|+|.++..|.| ++|+|.+|+++|.+++||+|+++||||||
T Consensus 157 ~rrvv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGV 236 (310)
T TIGR00746 157 WRRVVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAV 236 (310)
T ss_pred ceEeecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCce
Confidence 012 2356799999854444433322 46999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccccHHHHhhC--------CCCcchHHHHHHHHhC-CCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 253 YDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 253 yt~dP~~~p~aklI~~Is~~e~~~~--------g~~v~k~~Aa~~a~~~-Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
|+++ .+|++++|++++++|+.++ |.|.+|++||..+.+. +.+++|++ ++.+.++++|+ .||+|.
T Consensus 237 y~~~--~~p~a~~i~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 237 YINY--GKPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEALEGK-AGTRVT 309 (310)
T ss_pred eCCC--CCCCCcCCcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence 9964 3588999999999887643 4577899999665555 56899987 78899999999 999995
No 52
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.96 E-value=1.7e-28 Score=233.78 Aligned_cols=213 Identities=27% Similarity=0.338 Sum_probs=164.2
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHc-cc--C----------------
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-GN--S---------------- 151 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~-~~--~---------------- 151 (334)
+.|+||||+++.+ .+.++++++.|.... +.++++|.++ |.+.+....+ .. .
T Consensus 1 m~V~KFGGtSv~~-------~~~i~~v~~iI~~~~--~~~~vvVvSA~~gvTd~L~~~~~~a~~~~~~~~~~l~~i~~~h 71 (293)
T cd04243 1 MKVLKFGGTSVAS-------AERIRRVADIIKSRA--SSPVLVVVSALGGVTNRLVALAELAASGDDAQAIVLQEIRERH 71 (293)
T ss_pred CEEEEECccccCC-------HHHHHHHHHHHHHhc--CCCEEEEEcCCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 4799999999986 678889998887643 6788888887 4443332110 00 0
Q ss_pred --------------------------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceecc
Q 019877 152 --------------------------------------GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS 193 (334)
Q Consensus 152 --------------------------------------gl~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~ 193 (334)
.+..+..|.+.+.||++++.+++.+|+++|+++.+++++...
T Consensus 72 ~~~~~~L~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i 151 (293)
T cd04243 72 LDLIKELLSGESAAELLAALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELL 151 (293)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeE
Confidence 011223344556789999999999999999999988875431
Q ss_pred c----cchh---HH--HHHHHHHHhC-CCEEEEeCCCC---------CcccChHHHHHHHHHHcCCcEEEEeecCCcccc
Q 019877 194 E----VAEP---YI--RRRAVRHLEK-GRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD 254 (334)
Q Consensus 194 ~----~~~~---~i--~~~i~~lL~~-G~IPVi~g~~g---------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt 254 (334)
. .... +. ...+..+++. +.|||++||.+ ..+++||++|+++|.+++||+|++||||||||+
T Consensus 152 ~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt 231 (293)
T cd04243 152 LTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYT 231 (293)
T ss_pred EecCCCCcchhhhHHHHHHHHHHHhcCCCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCC
Confidence 1 1111 11 2245566665 89999999742 235789999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 255 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 255 ~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
+||+.+|+|++|++++|+|+.++ |.+++++.|+.+|.+++||++|.|+++|+ ..||+|.
T Consensus 232 ~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~i~i~~~~~p~---------~~GT~I~ 293 (293)
T cd04243 232 ADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPE---------APGTLIS 293 (293)
T ss_pred CCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCC---------CCCCEeC
Confidence 99999999999999999999874 88899999999999999999999999885 5699984
No 53
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.96 E-value=2.1e-28 Score=232.84 Aligned_cols=212 Identities=23% Similarity=0.272 Sum_probs=163.7
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHc----cc----------------
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA----GN---------------- 150 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~----~~---------------- 150 (334)
+.|+||||+++.+ .+.++++++.|... +.++|+|.++ |.+.+....+ ..
T Consensus 1 m~V~KFGGtSv~~-------~~~i~~v~~ii~~~---~~~~vVVVSA~~~vTd~L~~~~~~~~~~~~~~~~~~l~~l~~~ 70 (292)
T cd04258 1 MVVAKFGGTSVAD-------YAAMLRCAAIVKSD---ASVRLVVVSASAGVTNLLVALADAAESGEEIESIPQLHEIRAI 70 (292)
T ss_pred CEEEEECccccCC-------HHHHHHHHHHHhcc---CCCEEEEEeCCCCchHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 4799999999986 56888888887642 5677888877 4443332110 00
Q ss_pred -----------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceecc--
Q 019877 151 -----------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS-- 193 (334)
Q Consensus 151 -----------------------------------~gl~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~-- 193 (334)
..+.++..|.+.++|+++++.+++.+|++.|+++.++++++..
T Consensus 71 h~~~~~~L~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t 150 (292)
T cd04258 71 HFAILNRLGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRT 150 (292)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEe
Confidence 0012233466677899999999999999999999988876541
Q ss_pred --ccc--h---hHHHHHH---HHHHhCCCEEEEeCCCC---------CcccChHHHHHHHHHHcCCcEEEEeecCCcccc
Q 019877 194 --EVA--E---PYIRRRA---VRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD 254 (334)
Q Consensus 194 --~~~--~---~~i~~~i---~~lL~~G~IPVi~g~~g---------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt 254 (334)
+.. + .+..+.+ .+.+..+.|||++||.| +.+++||++|+++|.+++|+++++||||||||+
T Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~ 230 (292)
T cd04258 151 DSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYT 230 (292)
T ss_pred cCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCC
Confidence 111 1 1222222 23345679999999743 346899999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 255 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 255 ~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
+||+++|+|+++++|+|+|+.++ |.+++++.+..++.+.+||++|.|.++|+ ..||+|.
T Consensus 231 ~dP~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~~~~ipi~i~~~~~p~---------~~GT~I~ 292 (292)
T cd04258 231 TDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPE---------AGGTLIT 292 (292)
T ss_pred CCCCCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHHHcCCcEEEEeCCCCC---------CCCceeC
Confidence 99999999999999999999874 88999999999999999999999998875 5699984
No 54
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.96 E-value=5.3e-29 Score=233.29 Aligned_cols=206 Identities=21% Similarity=0.322 Sum_probs=158.7
Q ss_pred EEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC--------CCCCC-----hH
Q 019877 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS--------GLDRS-----SA 158 (334)
Q Consensus 93 iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~--------gl~~~-----~~ 158 (334)
+||||||+++++ +++++++|+.+ |.++|||||||++++.. ...+.. |+..+ ..
T Consensus 1 ~VIKlGGs~l~~----------~~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l 67 (257)
T cd04251 1 IVVKIGGSVVSD----------LDKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETL 67 (257)
T ss_pred CEEEEChHHhhC----------hHHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHH
Confidence 589999999985 25678899887 88999999999997653 222211 22111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceecccc-------------------chh------HHH-HHHHHHHhCCC
Q 019877 159 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-------------------AEP------YIR-RRAVRHLEKGR 212 (334)
Q Consensus 159 d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~-------------------~~~------~i~-~~i~~lL~~G~ 212 (334)
+...+..+.+|..+++ .|+++|+++..+++.+..-+ +.. .++ +.+..+|++|.
T Consensus 68 ~~~~~a~~~ln~~iv~-~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~ 146 (257)
T cd04251 68 EVFVMVMGLINKKIVA-RLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGY 146 (257)
T ss_pred HHHHHHHHHHHHHHHH-HHHhCCCCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCC
Confidence 2334444889999887 59999999988877653100 000 123 34678999999
Q ss_pred EEEEeCC----CC-CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-----CCCcc
Q 019877 213 VVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM 282 (334)
Q Consensus 213 IPVi~g~----~g-~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-----g~~v~ 282 (334)
|||++++ .| ..++++|++|+++|.+|+||+|+|+|||||||++ +++|++++++|+.++ |.|..
T Consensus 147 vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~ 219 (257)
T cd04251 147 LPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKR 219 (257)
T ss_pred eEEEeCcEECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHH
Confidence 9999874 22 3458999999999999999999999999999973 689999999887664 56888
Q ss_pred hHHHHHHHHhCCCc-EEEEcCCChhHHHHHHcCCCCceEE
Q 019877 283 DMTAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLI 321 (334)
Q Consensus 283 k~~Aa~~a~~~Gi~-V~I~ng~~~~~l~~~l~g~~~GT~I 321 (334)
|++++..+.++|++ ++|+++++|+++.++|+|+ ||+|
T Consensus 220 Kl~aa~~a~~~gv~~v~i~~g~~~~~l~~~l~g~--gT~i 257 (257)
T cd04251 220 KLLAAAEAVEGGVREVVIGDARADSPISSALNGG--GTVI 257 (257)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCccHHHHHHcCC--CcCC
Confidence 99999999999995 9999999999999999875 9975
No 55
>PRK08373 aspartate kinase; Validated
Probab=99.96 E-value=3.2e-28 Score=235.75 Aligned_cols=214 Identities=23% Similarity=0.317 Sum_probs=166.2
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHH-Hccc-----------------
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGAS-AAGN----------------- 150 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~-~~~~----------------- 150 (334)
.+++|+||||+++.+ .++++++.|... ..+.++|+|.++ |.+.+... .+..
T Consensus 3 ~~m~V~KFGGsSv~~---------~~~~v~~ii~~~-~~~~~vvVVVSA~~gvTd~L~~l~~~~~~~~l~~i~~~h~~~~ 72 (341)
T PRK08373 3 EKMIVVKFGGSSVRY---------DFEEALELVKYL-SEENEVVVVVSALKGVTDKLLKLAETFDKEALEEIEEIHEEFA 72 (341)
T ss_pred CCCEEEEECCcchHh---------HHHHHHHHHHHH-hcCCCEEEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 357899999999974 367777777743 457888888888 44443321 1100
Q ss_pred --C-------------------CC-CCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceeccc----cchhH-----
Q 019877 151 --S-------------------GL-DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE----VAEPY----- 199 (334)
Q Consensus 151 --~-------------------gl-~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~----~~~~~----- 199 (334)
. .+ ..+..|.+.++++++++.+++.+|+++|+++.+++++++.. .++..
T Consensus 73 ~~L~~~~~~~~~~l~~~~~~~~~~~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i~t~~~~~~a~i~~~~ 152 (341)
T PRK08373 73 KRLGIDLEILSPYLKKLFNSRPDLPSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKK 152 (341)
T ss_pred HHhccchhhHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHheeecCCccceeechhh
Confidence 0 11 12345677789999999999999999999999888765421 11111
Q ss_pred --HH-HHHHHHHhCCCEEEEeCCCC--------CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCccccc
Q 019877 200 --IR-RRAVRHLEKGRVVIFAAGTG--------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 268 (334)
Q Consensus 200 --i~-~~i~~lL~~G~IPVi~g~~g--------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~ 268 (334)
.+ +.+.++++.|.|||++|+.+ ..++++|++|+++|.+|+|+++++||||||||++||+.+|+|++|++
T Consensus 153 s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~ 232 (341)
T PRK08373 153 SKRNVKILYELLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPY 232 (341)
T ss_pred hhhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEccc
Confidence 12 34567889999999999754 23468999999999999999999999999999999999999999999
Q ss_pred ccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 269 LTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 269 Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
|+|+|+.++ |+.++++.|...|.+ +||++|.|.++| ..||+|...
T Consensus 233 isy~Ea~ela~~Gakvlhp~ai~~a~~-~Ipi~v~~t~~~----------~~GT~I~~~ 280 (341)
T PRK08373 233 LSYDEALIAAKLGMKALHWKAIEPVKG-KIPIIFGRTRDW----------RMGTLVSNE 280 (341)
T ss_pred CCHHHHHHHHHCcChhhhHHHHHHHHc-CCcEEEecCCCC----------CCCcEEecC
Confidence 999999864 888999999999999 999999998765 359999754
No 56
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.96 E-value=1.5e-28 Score=229.29 Aligned_cols=214 Identities=19% Similarity=0.232 Sum_probs=161.2
Q ss_pred EEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEECCchHHHHH-HHccc-----CCCCCCh---HHHHH
Q 019877 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDRSS---ADYIG 162 (334)
Q Consensus 93 iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~-~~G~~vVlVhGgG~~~~g~-~~~~~-----~gl~~~~---~d~~~ 162 (334)
+||||||++++++ +.+++++++|+.+. ..|.++|||||+|++++.. ...+. .+++... .+...
T Consensus 1 ~ViK~GGs~l~~~-------~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~ 73 (252)
T cd04249 1 LVIKLGGALLETE-------AALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYIT 73 (252)
T ss_pred CEEEEChHHhcCh-------hhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHH
Confidence 4899999999763 46889999999875 4578999999999997663 23332 1222222 22232
Q ss_pred H-HHHHHHHHHHHHHHHHcCCCeeEEeceecc---------cc---ch-hHHH-HHHHHHHhCCCEEEEeCC----C-CC
Q 019877 163 M-LATVMNAIFLQATMESIGIPTRVQTAFRMS---------EV---AE-PYIR-RRAVRHLEKGRVVIFAAG----T-GN 222 (334)
Q Consensus 163 ~-la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~---------~~---~~-~~i~-~~i~~lL~~G~IPVi~g~----~-g~ 222 (334)
+ +++.+|..+++. +.++|++++.+++.+.. +. ++ ..++ +.+..+|+.|.|||+++. . +.
T Consensus 74 ~~~~~~~n~~lv~~-l~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~ 152 (252)
T cd04249 74 GALAGTANKQLMAQ-AIKAGLKPVGLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQL 152 (252)
T ss_pred HHHcCcccHHHHHH-HHhCCCCceeeeccCCCEEEEEEcCCCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCE
Confidence 2 356788899987 55899999988776431 11 11 1123 346789999999999973 2 24
Q ss_pred cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CCCcchHHHHHHHHhC-C
Q 019877 223 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQEN-N 294 (334)
Q Consensus 223 ~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~~v~k~~Aa~~a~~~-G 294 (334)
.++++|.+|+++|.+++|+ ++++|||||||++|| ++|++++++|+.++ |.|..|++++..+.+. +
T Consensus 153 ~~~~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~ 225 (252)
T cd04249 153 MNVNADQAATAIAQLLNAD-LVLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLR 225 (252)
T ss_pred eeecHHHHHHHHHHHcCCC-EEEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCC
Confidence 5689999999999999999 789999999998764 68999998887653 3467799998887666 4
Q ss_pred CcEEEEcCCChhHHHHHHcCCCCceEE
Q 019877 295 IPVVVFNLNQPGNIAKAIQGERVGTLI 321 (334)
Q Consensus 295 i~V~I~ng~~~~~l~~~l~g~~~GT~I 321 (334)
++++|++++.|+.+.++|+|+++||+|
T Consensus 226 ~~v~I~~g~~~~~l~~~l~g~~~GT~I 252 (252)
T cd04249 226 RGIDIASWQYPEQLTALLAGEPVGTKI 252 (252)
T ss_pred CeEEEEeCCCccHHHHHHcCCCCCcCC
Confidence 679999999999999999999999986
No 57
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.96 E-value=5.4e-28 Score=231.12 Aligned_cols=156 Identities=22% Similarity=0.301 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceeccccc-------hh---HHHHHHHHHHh--CCCEEEEeCCCC-----
Q 019877 159 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-------EP---YIRRRAVRHLE--KGRVVIFAAGTG----- 221 (334)
Q Consensus 159 d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~-------~~---~i~~~i~~lL~--~G~IPVi~g~~g----- 221 (334)
|.+.++|+++++.|++.+|++.|+++.+++++++...+ .. ++.+.+...+. .+.|||++||.|
T Consensus 126 d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G 205 (306)
T cd04247 126 DLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNVPGG 205 (306)
T ss_pred HHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHheecCCCccccccchhHHHHHHHHHHhhccCCceEEeeccEecCCCC
Confidence 45566889999999999999999999988876542111 11 12222223232 578999999733
Q ss_pred ----CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCC
Q 019877 222 ----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENN 294 (334)
Q Consensus 222 ----~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~G 294 (334)
+.++++|++|+++|..++|+++++||||||||++||+.+|+|++|++|+|+|+.++ |.+++|++++.+|.+.+
T Consensus 206 ~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~~ 285 (306)
T cd04247 206 LLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKAR 285 (306)
T ss_pred CeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHcC
Confidence 34689999999999999999999999999999999999999999999999999875 88999999999999999
Q ss_pred CcEEEEcCCChhHHHHHHcCCCCceEEec
Q 019877 295 IPVVVFNLNQPGNIAKAIQGERVGTLIGG 323 (334)
Q Consensus 295 i~V~I~ng~~~~~l~~~l~g~~~GT~I~~ 323 (334)
||++|.|.++|+ ..||+|.+
T Consensus 286 Ipi~i~nt~~P~---------~~GT~I~~ 305 (306)
T cd04247 286 IPIRIKNVENPR---------GEGTVIYP 305 (306)
T ss_pred CcEEEecCCCCC---------CCCcEEcC
Confidence 999999998875 56999976
No 58
>PRK09084 aspartate kinase III; Validated
Probab=99.96 E-value=8.4e-28 Score=241.35 Aligned_cols=213 Identities=21% Similarity=0.243 Sum_probs=166.5
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHc-c--cC----------------
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-G--NS---------------- 151 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~-~--~~---------------- 151 (334)
++|.||||+++.+ .+.++++++.|++ .+.++|+|.++ |.+.+....+ + ..
T Consensus 1 m~V~KFGGtSv~~-------~e~i~~v~~ii~~---~~~~~vvVVSA~~~~Td~L~~~~~~~~~~~~~~~~~~~i~~~h~ 70 (448)
T PRK09084 1 LVVAKFGGTSVAD-------FDAMNRSADIVLS---NPNTRLVVLSASAGVTNLLVALAEGAEPGDERLALLDEIRQIQY 70 (448)
T ss_pred CEEEEECccCcCC-------HHHHHHHHHHHhc---CCCCEEEEEcCCCCchHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 5799999999986 6789888888865 46778888888 5554432111 0 00
Q ss_pred ----------------------------C----CCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceecc----cc
Q 019877 152 ----------------------------G----LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EV 195 (334)
Q Consensus 152 ----------------------------g----l~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~----~~ 195 (334)
+ ++++..|.+...||++++.+++.+|+++|+++.++++++.. ++
T Consensus 71 ~~~~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~t~~~~ 150 (448)
T PRK09084 71 AILDRLGDPNVVREEIERLLENITVLAEAASLATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMRTDDRF 150 (448)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHhhhhcCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEEecCCC
Confidence 0 12234455667899999999999999999999988875441 11
Q ss_pred ch--h---HHH----HHHHHHHhCCCEEEEeCCCC---------CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCC
Q 019877 196 AE--P---YIR----RRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNP 257 (334)
Q Consensus 196 ~~--~---~i~----~~i~~lL~~G~IPVi~g~~g---------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP 257 (334)
++ + ... ..+..+++.+ |||++||.| +.++++|++|+++|.+++||++++||||||||++||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP 229 (448)
T PRK09084 151 GRAEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDP 229 (448)
T ss_pred CcccccHHHHHHHHHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCC
Confidence 11 1 122 2234566778 999999733 346899999999999999999999999999999999
Q ss_pred CCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 258 RRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 258 ~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
+.+|+|++|++|+|+|+.++ |.+++++.+..++.+.++|++|.|+.+|+ ..||+|...
T Consensus 230 ~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~~~~~i~i~i~~~~~~~---------~~GT~I~~~ 290 (448)
T PRK09084 230 RIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPE---------AGGTWICND 290 (448)
T ss_pred CCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEEeCCCCC---------CCceEEecC
Confidence 99999999999999999875 88899999999999999999999998885 469999754
No 59
>PRK05925 aspartate kinase; Provisional
Probab=99.96 E-value=1.2e-27 Score=239.23 Aligned_cols=215 Identities=16% Similarity=0.180 Sum_probs=166.2
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHH-ccc-----------------
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASA-AGN----------------- 150 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~-~~~----------------- 150 (334)
+.++|.||||+++.+ .+.++++++.|.. ..++++|.++ |.+.+.... ++.
T Consensus 1 ~~~~V~KFGGtSv~~-------~e~i~~v~~ii~~----~~~~vVVvSA~~~~Td~L~~~~~~a~~~~~~~~~~i~~~~~ 69 (440)
T PRK05925 1 MAPLVYKFGGTSLGT-------AESIRRVCDIICK----EKPSFVVVSAVAGVTDLLEEFCRLSKGKREALTEKIREKHE 69 (440)
T ss_pred CCcEEEEECccccCC-------HHHHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 357899999999986 5688888888764 2457777777 544443211 100
Q ss_pred -----C--------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceecccc----ch----
Q 019877 151 -----S--------------------GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV----AE---- 197 (334)
Q Consensus 151 -----~--------------------gl~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~----~~---- 197 (334)
. .+..+..|.+..+||++++.+++.+|++.|+++.++++++.... .+
T Consensus 70 ~~~~~l~~~~~~~~~~~~L~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~ 149 (440)
T PRK05925 70 EIAKELGIEFSLSPWWERLEHFEDVEEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQVILTDDQYLRAVPD 149 (440)
T ss_pred HHHHHhhcchhhhHHHHHHHHHHHhCcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhEeecCCccccccC
Confidence 0 01223345566689999999999999999999998887654211 11
Q ss_pred -hHHHHHHHH-HHhCCCEEEEeCCCC---------CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCccc
Q 019877 198 -PYIRRRAVR-HLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 266 (334)
Q Consensus 198 -~~i~~~i~~-lL~~G~IPVi~g~~g---------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI 266 (334)
.++.+.+.. .++.+.|||++||.| +.+++||++|+++|.+++||.|++||||||||++||+.+|+|++|
T Consensus 150 ~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i 229 (440)
T PRK05925 150 LALMQTAWHELALQEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLI 229 (440)
T ss_pred HHHHHHHHHHhhccCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEe
Confidence 223333333 346778999999733 357999999999999999999999999999999999999999999
Q ss_pred ccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 267 DTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 267 ~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
++++|+|+.++ |..++++.++++|.+.|||++|.|+++|+ ..||+|.+.
T Consensus 230 ~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~Ipi~I~~~~~p~---------~~GT~i~~~ 281 (440)
T PRK05925 230 PELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVT---------KGGTWIYAS 281 (440)
T ss_pred eEECHHHHHHHHhCCCCcCCHHHHHHHHHCCCcEEEecCCCCC---------CCccEEecC
Confidence 99999998765 78899999999999999999999999886 369999764
No 60
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.96 E-value=6.9e-28 Score=218.42 Aligned_cols=192 Identities=23% Similarity=0.343 Sum_probs=151.2
Q ss_pred EEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHc-ccCCCCCChHHHHHHHHHHHHHHH
Q 019877 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GNSGLDRSSADYIGMLATVMNAIF 172 (334)
Q Consensus 94 VIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~-~~~gl~~~~~d~~~~la~~~n~~L 172 (334)
|||+|||++.+ +..+.+.++.+. |++++||.|||.+++..+.. ...++++...|+++++++++|+.+
T Consensus 1 vvKiGGsl~~~----------~~~~~~~l~~~~--~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~ 68 (203)
T cd04240 1 VVKIGGSLIRE----------AVRLLRWLKTLS--GGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYL 68 (203)
T ss_pred CEEEccccccc----------HHHHHHHHHhcc--CCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 79999998643 334445555543 78999999999997765433 356889899999999999999988
Q ss_pred HHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCC------C---CCcccChHHHHHHHHHHcCCcEE
Q 019877 173 LQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG------T---GNPFFTTDTAAALRCAEINAEVV 243 (334)
Q Consensus 173 v~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~------~---g~~~~~sD~lAa~lA~~l~Ad~L 243 (334)
++..+...+.. -..++..++..|.|||+.|. . ..+++++|++|+++|.+++|++|
T Consensus 69 l~~~~~~~~~~----------------~~~~~~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~L 132 (203)
T cd04240 69 LADLEPRLVAR----------------TLAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRL 132 (203)
T ss_pred HhccCCccccC----------------CHHHHHHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEE
Confidence 76422211100 01345678899999999884 1 23568999999999999999999
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCC-CCceEE
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE-RVGTLI 321 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~-~~GT~I 321 (334)
+++|||||||++| +++++++++.|+.. ...++..+++.+.++|++++|+|+++|+++.+++.|+ .+||+|
T Consensus 133 i~ltdVdGVy~~d------a~~i~~i~~~e~~~--~~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT~I 203 (203)
T cd04240 133 VIVTDVDGIYEKD------GKLVNEIAAAELLG--ETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI 203 (203)
T ss_pred EEEeCCccccCCC------CcCccccCHHHhCC--CCeehhhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence 9999999999864 78999999887643 4455666678889999999999999999999999998 789975
No 61
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.96 E-value=6.2e-27 Score=223.27 Aligned_cols=227 Identities=23% Similarity=0.320 Sum_probs=164.8
Q ss_pred CCeEEEEeCCccccCCCC-CCCCH--HHHHHHHHHHHHHHhCCCeEEEEECCchHH----HHHHHcccCCCCCC-----h
Q 019877 90 WQRVLLKVSGEALAGDHT-QNIDP--KITMAIAREVASVTRLGIEVAIVVGGGNIF----RGASAAGNSGLDRS-----S 157 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~-~~l~~--~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~----~g~~~~~~~gl~~~-----~ 157 (334)
++++||+|||++|..++. ..... +.++..+++|+.+.+.|+++||+||+|++. .+.......+.+.. .
T Consensus 2 ~~~ivvalgGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~~ 81 (313)
T PRK12454 2 KKRIVIALGGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAG 81 (313)
T ss_pred CceEEEEeChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchhh
Confidence 369999999999987542 22222 488999999999999999999999999954 22222222133333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceec-----cc---------c------------------------chhH
Q 019877 158 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM-----SE---------V------------------------AEPY 199 (334)
Q Consensus 158 ~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~-----~~---------~------------------------~~~~ 199 (334)
.+..++++.+++..|-. .|..+|++....+..+. .| + ++.|
T Consensus 82 a~sqG~igy~l~~al~~-~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~g~ 160 (313)
T PRK12454 82 AMTQGWIGYMIQQALRN-ELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGW 160 (313)
T ss_pred hhhhHHHHHHHHHHHHH-HHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCCce
Confidence 34456777777666654 48889987654444321 00 0 0000
Q ss_pred ------------HH-HHHHHHHhCCCEEEEeCCCCCc-------------ccChHHHHHHHHHHcCCcEEEEeecCCccc
Q 019877 200 ------------IR-RRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVY 253 (334)
Q Consensus 200 ------------i~-~~i~~lL~~G~IPVi~g~~g~~-------------~~~sD~lAa~lA~~l~Ad~LiilTDVdGVy 253 (334)
++ +.+..+|+.|.|||++|+.|++ ++|+|.+|+++|.+++||+|+|+|||||||
T Consensus 161 RrvV~SP~P~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy 240 (313)
T PRK12454 161 RRVVPSPDPLGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVY 240 (313)
T ss_pred EEEeCCCCCccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceee
Confidence 12 2356789999999999765543 356899999999999999999999999999
Q ss_pred cCCCCCCCCCcccccccHHHHhhC--------CCCcchHHHHHHHHhCC-CcEEEEcCCChhHHHHHHcCCCCceEEec
Q 019877 254 DDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIGG 323 (334)
Q Consensus 254 t~dP~~~p~aklI~~Is~~e~~~~--------g~~v~k~~Aa~~a~~~G-i~V~I~ng~~~~~l~~~l~g~~~GT~I~~ 323 (334)
++ ++ +|++++|++++..|+.++ |.|.+|+++|..+.+.| .+++|++ ++.+.++++|+ .||+|.+
T Consensus 241 ~~-~~-~p~~~~i~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~aL~G~-~GT~I~~ 313 (313)
T PRK12454 241 LN-YG-KPDQKPLDKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVEALEGK-TGTRIIP 313 (313)
T ss_pred CC-CC-CCCCeEccccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence 86 32 578999999999887642 45788999997766665 5699885 67889999998 7999963
No 62
>PRK09034 aspartate kinase; Reviewed
Probab=99.95 E-value=3.6e-27 Score=237.21 Aligned_cols=214 Identities=21% Similarity=0.239 Sum_probs=165.3
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-ch-------HHHHHHHc----cc---------
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GN-------IFRGASAA----GN--------- 150 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~-------~~~g~~~~----~~--------- 150 (334)
++|.||||+++.+ .+.++++++.|.. .+.++|+|.++ |. +.+....+ ..
T Consensus 1 m~V~KFGGtSv~~-------~~~i~~v~~ii~~---~~~~~vvVVSA~~~~~~~~~~~Td~L~~~~~~~~~~~~~~~~~~ 70 (454)
T PRK09034 1 MKVVKFGGSSLAS-------AEQFKKVLNIVKS---DPERKIVVVSAPGKRFKEDTKVTDLLILYAEAVLAGEDYEDIFE 70 (454)
T ss_pred CEEEEeCccccCC-------HHHHHHHHHHHhc---cCCCEEEEEcCCcCCCCCccChHHHHHHHHHHHhcCCcHHHHHH
Confidence 4699999999986 5678888887763 35677778877 42 33332111 00
Q ss_pred ----------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceecccc-
Q 019877 151 ----------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV- 195 (334)
Q Consensus 151 ----------------------------------~gl~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~- 195 (334)
....++..|.+...|+++++.+++.+|++.|+++.++++++..-+
T Consensus 71 ~~~~~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t 150 (454)
T PRK09034 71 AIIARYAEIAKELGLDADILEKIEEILEHLANLASRNPDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIV 150 (454)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEe
Confidence 011223346667789999999999999999999999887665211
Q ss_pred ----chhHH----HHHHHHHHhCCCEEEEeCCCC---------CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCC
Q 019877 196 ----AEPYI----RRRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR 258 (334)
Q Consensus 196 ----~~~~i----~~~i~~lL~~G~IPVi~g~~g---------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~ 258 (334)
+...+ .+.+..++..+.|||++||.| ...+++|+.|+++|.+|+||++.+||||||||++|||
T Consensus 151 ~~~~~~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr 230 (454)
T PRK09034 151 TDEPGNAQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPR 230 (454)
T ss_pred cCCcCceeEcHhhHHHHHHHHhcCCEEEecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCC
Confidence 11111 123445556778999999743 2468999999999999999999999999999999999
Q ss_pred CCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 259 RNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 259 ~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
.+|+|+++++|+|+|+.++ |++++++.|..+|.+++||++|.|.++|+ ..||+|..+
T Consensus 231 ~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~Ipi~v~~~~~p~---------~~GT~I~~~ 290 (454)
T PRK09034 231 IVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNPE---------DPGTLIVPD 290 (454)
T ss_pred CCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCCCEEEEcCCCCC---------CCccEEEec
Confidence 9999999999999999874 89999999999999999999999998874 469999754
No 63
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.95 E-value=1.6e-27 Score=219.56 Aligned_cols=202 Identities=25% Similarity=0.351 Sum_probs=145.9
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCC------ChHHH----
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR------SSADY---- 160 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~------~~~d~---- 160 (334)
|++||||||+++++++ .+ +.+++++|+.+.+.|.++|||||+|++++..... +++.. +..+.
T Consensus 1 k~~ViK~GGs~l~~~~-----~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~ 72 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKD-----EE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLEK--YGIEPKFVDGSRVTDIETGL 72 (242)
T ss_dssp SEEEEEE-HHGHSSHS-----HH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH--CTHTTSEETHHCHBHHHHHH
T ss_pred CeEEEEECchhhCCch-----HH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHh--ccCCcccchhhhhhhhhhhH
Confidence 6899999999999742 24 9999999999999999999999999998764332 22221 11111
Q ss_pred --HHHHHHHHHH-----HHHHHHHHHcCCCeeEEeceeccccc-----hhHHHHHHHHHHhCCCEEEEeCC-----CC-C
Q 019877 161 --IGMLATVMNA-----IFLQATMESIGIPTRVQTAFRMSEVA-----EPYIRRRAVRHLEKGRVVIFAAG-----TG-N 222 (334)
Q Consensus 161 --~~~la~~~n~-----~Lv~~~L~~~Gi~a~~l~~~~~~~~~-----~~~i~~~i~~lL~~G~IPVi~g~-----~g-~ 222 (334)
...+.+.+|. .+++ ++..++..+....+.+..-.. .....+.+..+|++|.|||++|+ .| .
T Consensus 73 ~~~~~~~~~l~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~ 151 (242)
T PF00696_consen 73 IITMAAAAELNRDALLDEIVS-AGERLGAHAVGLSLSDGGISAAKRDAREVDKEAIRELLEQGIIPVVSGFAGIDDDGEV 151 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHCTHHEEEHHHTGGTEEEEEEESSEEHHHHHHHHHHTTSEEEEESEEEEETTSTE
T ss_pred HHHHHHhhccccchhHHHHHH-hhhhhhHHHHhhhhhcccchhhhhhhhhhHHHHHHHHHHCCCEEEEeCCcccCCCCCc
Confidence 1123334444 4444 377788776544333321000 01223556789999999999984 23 2
Q ss_pred ---cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC--------CCCcchHHHHH-HH
Q 019877 223 ---PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAIT-LC 290 (334)
Q Consensus 223 ---~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~--------g~~v~k~~Aa~-~a 290 (334)
+++++|++|+++|.+|+|++|+|+|||||||++||+.+|++++|++|+++|+.++ +.+..|+.++. .+
T Consensus 152 ~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~ 231 (242)
T PF00696_consen 152 TTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAA 231 (242)
T ss_dssp EEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999863 33455666664 55
Q ss_pred HhCCCcEEEEc
Q 019877 291 QENNIPVVVFN 301 (334)
Q Consensus 291 ~~~Gi~V~I~n 301 (334)
.+.+++|+|+|
T Consensus 232 ~~~~~~v~I~n 242 (242)
T PF00696_consen 232 EEGGIPVHIIN 242 (242)
T ss_dssp HHTTSEEEEEE
T ss_pred HcCCCcEEEeC
Confidence 55588999986
No 64
>PLN02551 aspartokinase
Probab=99.95 E-value=8.6e-27 Score=237.18 Aligned_cols=218 Identities=23% Similarity=0.279 Sum_probs=166.9
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHc----cc-------------
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA----GN------------- 150 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~----~~------------- 150 (334)
+.-++|.||||+++.+ .+.++++++.|.... ..++|+|.++ |.+.+....+ ..
T Consensus 50 ~~~~~V~KFGGtSv~~-------~e~i~~v~~iI~~~~--~~~~vVVvSA~~~~Td~L~~~~~~a~~~~~~~~~~~~~l~ 120 (521)
T PLN02551 50 KQLTVVMKFGGSSVAS-------AERMREVADLILSFP--DERPVVVLSAMGKTTNNLLLAGEKAVSCGVTNVSEIEELS 120 (521)
T ss_pred cCceEEEEECCCccCC-------HHHHHHHHHHHHhcC--CCCEEEEEcCCCCchHHHHHHHHHHhhccccchhhHHHHH
Confidence 3346799999999986 678999998887643 3457777777 5444332111 00
Q ss_pred -------------------------------C------CCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceecc
Q 019877 151 -------------------------------S------GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS 193 (334)
Q Consensus 151 -------------------------------~------gl~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~ 193 (334)
. .+..+..|.+..+||++++.|++.+|++.|+++.++++++..
T Consensus 121 ~i~~~h~~~~~~L~~~~~~~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~g 200 (521)
T PLN02551 121 AIRELHLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIG 200 (521)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcc
Confidence 0 012334466677899999999999999999999999886652
Q ss_pred -----ccchhHH----HHHHHHH----H-hCCCEEEEeCCCC----------CcccChHHHHHHHHHHcCCcEEEEeecC
Q 019877 194 -----EVAEPYI----RRRAVRH----L-EKGRVVIFAAGTG----------NPFFTTDTAAALRCAEINAEVVLKATNV 249 (334)
Q Consensus 194 -----~~~~~~i----~~~i~~l----L-~~G~IPVi~g~~g----------~~~~~sD~lAa~lA~~l~Ad~LiilTDV 249 (334)
.+++..+ .+.+.+. + +.+.|||++||.| +.++++|+.|+++|.+|+|+++.+||||
T Consensus 201 i~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV 280 (521)
T PLN02551 201 FITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDV 280 (521)
T ss_pred eEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCC
Confidence 1122222 1222222 2 3568999999743 2358999999999999999999999999
Q ss_pred CccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 250 DGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 250 dGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
||||++||+.+|+|++|++|+|+|+.++ |++++|++++.+|.+++||++|.|.++|+ ..||+|...
T Consensus 281 ~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai~pa~~~~Ipi~vknt~~p~---------~~GT~I~~~ 349 (521)
T PLN02551 281 DGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPT---------APGTLITKT 349 (521)
T ss_pred CceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHCCceEEEEecCCCC---------CCCcEEecc
Confidence 9999999999999999999999999875 89999999999999999999999998774 579999754
No 65
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.95 E-value=3.2e-26 Score=219.62 Aligned_cols=226 Identities=19% Similarity=0.245 Sum_probs=162.9
Q ss_pred CeEEEEeCCccccCCC-CCCC--CHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHccc----CCCCCChHHH--
Q 019877 91 QRVLLKVSGEALAGDH-TQNI--DPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN----SGLDRSSADY-- 160 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~-~~~l--~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~----~gl~~~~~d~-- 160 (334)
|++||||||+++.+++ ..++ ..+.++.++++|+.|+..|+++|||||+|+++... ...+. .+++..+.+.
T Consensus 3 k~iVI~lGGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~~g~rvt~~~~~v 82 (316)
T PRK12352 3 ELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLANCV 82 (316)
T ss_pred cEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCcccccCCCCCCCHHHHH
Confidence 6999999999997643 2222 33678999999999999999999999999998663 33222 2455555552
Q ss_pred ---HHHHHHHHHHHHHHHHHHHcCCCe-------eEEeceecc-------------------------cc------ch--
Q 019877 161 ---IGMLATVMNAIFLQATMESIGIPT-------RVQTAFRMS-------------------------EV------AE-- 197 (334)
Q Consensus 161 ---~~~la~~~n~~Lv~~~L~~~Gi~a-------~~l~~~~~~-------------------------~~------~~-- 197 (334)
.+.++..+|+.|.+. |..+|..+ +.+++.|.. +. +.
T Consensus 83 ~~~~g~i~~~i~~~L~~~-l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~ 161 (316)
T PRK12352 83 ADTQGGIGYLIQQALNNR-LARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGY 161 (316)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCe
Confidence 223456677777764 77777443 122211100 00 00
Q ss_pred ----------hHHHHH-HHHHHhCCCEEEEe---------CCCCC-----cccChHHHHHHHHHHcCCcEEEEeecCCcc
Q 019877 198 ----------PYIRRR-AVRHLEKGRVVIFA---------AGTGN-----PFFTTDTAAALRCAEINAEVVLKATNVDGV 252 (334)
Q Consensus 198 ----------~~i~~~-i~~lL~~G~IPVi~---------g~~g~-----~~~~sD~lAa~lA~~l~Ad~LiilTDVdGV 252 (334)
..++.+ +..+|++|+|||.+ +..+. .++|+|.+|+.+|.+|+||+|+|+|||+||
T Consensus 162 rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV 241 (316)
T PRK12352 162 RRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKV 241 (316)
T ss_pred EEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhh
Confidence 012434 56799999994444 32221 137899999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccccHHHHhhC--------CCCcchHHHHHHHHhCCCc-EEEEcCCChhHHHHHHcCCCCceEEec
Q 019877 253 YDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLIGG 323 (334)
Q Consensus 253 yt~dP~~~p~aklI~~Is~~e~~~~--------g~~v~k~~Aa~~a~~~Gi~-V~I~ng~~~~~l~~~l~g~~~GT~I~~ 323 (334)
|.++| +|++++|++++..|++++ |.|.+|++||..+.+.|+. ++|++ ++.+.++|+|+ .||+|..
T Consensus 242 ~~d~~--~~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 242 CIHFG--KPQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHIIK 315 (316)
T ss_pred ccCCC--CCCcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHHHHHHcCC-CCeEEEe
Confidence 98765 367789999999987643 4588899999998888885 99996 78899999998 8999964
No 66
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.95 E-value=1.1e-26 Score=232.24 Aligned_cols=221 Identities=17% Similarity=0.225 Sum_probs=164.6
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCCCChH---H
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLDRSSA---D 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~~~~~---d 159 (334)
+.+++|||+||+++.++ .+..++++|+.|...|.++|||||||++++.+ ..++.. |++.+.. +
T Consensus 16 ~~~~~ViK~GG~~~~~~--------~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~ 87 (429)
T TIGR01890 16 RGKTFVVGLGGELVEGG--------NLGNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRVTDEASLE 87 (429)
T ss_pred CCCEEEEEEChhhccCc--------cHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHH
Confidence 56899999999999763 24688999999999999999999999998774 344422 4443332 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeE-----Eeceec-----------c--c---cch-hHHHHH-HHHHHhCCCEEEE
Q 019877 160 YIGMLATVMNAIFLQATMESIGIPTRV-----QTAFRM-----------S--E---VAE-PYIRRR-AVRHLEKGRVVIF 216 (334)
Q Consensus 160 ~~~~la~~~n~~Lv~~~L~~~Gi~a~~-----l~~~~~-----------~--~---~~~-~~i~~~-i~~lL~~G~IPVi 216 (334)
...+++..+|..|++. |++. +++.. +++.+. . + .++ ..++.+ +..+|+.|+|||+
T Consensus 88 ~~~~~~g~vn~~l~~~-l~~~-~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~ipvi 165 (429)
T TIGR01890 88 QAQQAAGTLRLAIEAR-LSMS-LSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSIVLL 165 (429)
T ss_pred HHHHHhChHHHHHHHH-HHhc-CCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCeEEE
Confidence 3445666788888875 6655 33221 222111 0 1 111 123544 5679999999999
Q ss_pred eCC----CC-CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-----CC-CcchHH
Q 019877 217 AAG----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DL-SVMDMT 285 (334)
Q Consensus 217 ~g~----~g-~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-----g~-~v~k~~ 285 (334)
++. .| ..++++|.+|+.||.+|+|++|+|+|||+|||++ ++++|++|+.+|+.++ +. +..|++
T Consensus 166 ~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~kl~ 239 (429)
T TIGR01890 166 SPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDP------DGTLAAELSPQEVESLAERLGSETTRRLLS 239 (429)
T ss_pred CCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCCcHHHHH
Confidence 872 23 3468999999999999999999999999999974 2679999998777653 33 488999
Q ss_pred HHHHHHhCCCc-EEEEcCCChhHHH-HHHcCCCCceEEecCC
Q 019877 286 AITLCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIGGTW 325 (334)
Q Consensus 286 Aa~~a~~~Gi~-V~I~ng~~~~~l~-~~l~g~~~GT~I~~~~ 325 (334)
++..|.+.|++ ++|+|++.|+.+. +++..++.||+|..+.
T Consensus 240 ~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~ 281 (429)
T TIGR01890 240 AAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEA 281 (429)
T ss_pred HHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccc
Confidence 99999999985 9999999999975 5667888999998754
No 67
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.95 E-value=1.2e-26 Score=223.60 Aligned_cols=209 Identities=22% Similarity=0.287 Sum_probs=154.8
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHc--------------------cc
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA--------------------GN 150 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~--------------------~~ 150 (334)
++|+||||+++.+ .++++++.|.... .+.++++|.|| |.+.+....+ ..
T Consensus 1 m~V~KFGGsSv~~---------~~~~v~~ii~~~~-~~~~~vVVVSA~~gvTd~L~~~~~~~~~~~l~~i~~~h~~~~~~ 70 (327)
T TIGR02078 1 MIVVKFGGSSVRY---------AFEEALELVKSLS-EEKRVIVVVSALKGITDCLIRYANTFDKSAALEIEEIYEEFAKE 70 (327)
T ss_pred CEEEEECCcchHH---------HHHHHHHHHHHHh-cCCCEEEEeCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999984 2778888877654 35788888888 3332221100 00
Q ss_pred CCC-------------------CCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceeccc----cch-----hH--H
Q 019877 151 SGL-------------------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE----VAE-----PY--I 200 (334)
Q Consensus 151 ~gl-------------------~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~----~~~-----~~--i 200 (334)
.+. .+...|++..+++++++.|++. |+++.++++++... .++ ++ .
T Consensus 71 L~~~~~~~~~~l~~~~~~~~l~~~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~i~t~~~~~~a~~~~~~~~~ 145 (327)
T TIGR02078 71 LGVDLNILSPYLKELFNPPDLPKEALRDYILSLGERLSAVIFAE-----GINGKVVDPWDIFFAKGDFGNAFIDIKKSKR 145 (327)
T ss_pred hccchhhhHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHHhccCCcCCceeechhhhHh
Confidence 011 1223466677888888777653 78888877654421 111 11 1
Q ss_pred H-HHHHHHHhCCCEEEEeCCCC--------CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccH
Q 019877 201 R-RRAVRHLEKGRVVIFAAGTG--------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY 271 (334)
Q Consensus 201 ~-~~i~~lL~~G~IPVi~g~~g--------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~ 271 (334)
+ +.+.++++.|.|||++|+.+ ..+++||++|+++|.+++|+++++||||||||++||+.+|+|++|++++|
T Consensus 146 ~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy 225 (327)
T TIGR02078 146 NAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSY 225 (327)
T ss_pred hHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCH
Confidence 1 23457889999999998743 13468999999999999999999999999999999999999999999999
Q ss_pred HHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecCC
Q 019877 272 QEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 325 (334)
Q Consensus 272 ~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~~ 325 (334)
+|+.++ |+.++|+.|+.+|.+.|||++|.|.++|+ .||+|....
T Consensus 226 ~Ea~ela~~Gakvlhp~a~~~a~~~~Ipi~I~~t~~~~----------~GT~I~~~~ 272 (327)
T TIGR02078 226 EEIKIAAKLGMKALQWKAADLAKEYKIPVLFGRTRDWR----------MGTLISNRS 272 (327)
T ss_pred HHHHHHHHCCchhhHHHHHHHHHHCCCeEEEEeCCCcC----------CCcEEecCC
Confidence 998754 77889999999999999999999987662 599997543
No 68
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.95 E-value=2.3e-26 Score=217.92 Aligned_cols=217 Identities=21% Similarity=0.303 Sum_probs=159.6
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCCCChH---H
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLDRSSA---D 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~~~~~---d 159 (334)
+.+++|||+||+++.++ .+++++++|+.+.+.|.++|||||||++++.+ ...+.. |++.+.. +
T Consensus 17 ~~~~~VIKlGG~ai~~~--------~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~RvT~~~~l~ 88 (280)
T cd04237 17 RGKTFVIAFGGEAVAHP--------NFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAAALE 88 (280)
T ss_pred CCCEEEEEEChHHhcCc--------hHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcCcCCHHHHH
Confidence 35789999999999853 46789999999999999999999999998763 344321 3333332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeEE-----ecee-----c---c-----c---cch-hHHHH-HHHHHHhCCCEEEE
Q 019877 160 YIGMLATVMNAIFLQATMESIGIPTRVQ-----TAFR-----M---S-----E---VAE-PYIRR-RAVRHLEKGRVVIF 216 (334)
Q Consensus 160 ~~~~la~~~n~~Lv~~~L~~~Gi~a~~l-----~~~~-----~---~-----~---~~~-~~i~~-~i~~lL~~G~IPVi 216 (334)
...+....+|..+.+. |+. |+++..+ +..+ . . + .++ ..++. .+..+|++|+|||+
T Consensus 89 ~~~~~~g~v~~~l~~~-l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~ipv~ 166 (280)
T cd04237 89 CVKEAAGAVRLEIEAL-LSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLL 166 (280)
T ss_pred HHHHHHHHHHHHHHHH-HHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCEEEE
Confidence 2333335567666554 644 7766422 2111 0 0 0 111 12343 35789999999999
Q ss_pred eCC----CCCc-ccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC--------CCCcch
Q 019877 217 AAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMD 283 (334)
Q Consensus 217 ~g~----~g~~-~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~--------g~~v~k 283 (334)
++. +|.. .+++|.+|+++|.+|+|++|+|+|||||||++ ++++|++++.+|+.++ |.|.+|
T Consensus 167 ~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~K 240 (280)
T cd04237 167 SPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARL 240 (280)
T ss_pred CCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHH
Confidence 873 3333 46999999999999999999999999999974 2689999998777642 447889
Q ss_pred HHHHHHHHhCCC-cEEEEcCCChhHH-HHHHcCCCCceEE
Q 019877 284 MTAITLCQENNI-PVVVFNLNQPGNI-AKAIQGERVGTLI 321 (334)
Q Consensus 284 ~~Aa~~a~~~Gi-~V~I~ng~~~~~l-~~~l~g~~~GT~I 321 (334)
+++|..+.+.|+ +++|++++.|+.+ .+++..++.||+|
T Consensus 241 v~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 241 LQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 999999999999 5999999999987 5788888899985
No 69
>PRK12686 carbamate kinase; Reviewed
Probab=99.95 E-value=2.1e-26 Score=219.96 Aligned_cols=226 Identities=18% Similarity=0.265 Sum_probs=160.5
Q ss_pred CCeEEEEeCCccccCCC-CCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-H-Hccc--CCCCCChHHHHHH-
Q 019877 90 WQRVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-S-AAGN--SGLDRSSADYIGM- 163 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~-~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~-~~~~--~gl~~~~~d~~~~- 163 (334)
++++|||+||+++..++ ......+.++..+++|+.|.+.|+++||+||+|++.... . .... ...+..+.|...+
T Consensus 2 ~~~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~~~~~pl~~~~a~ 81 (312)
T PRK12686 2 KEKIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNKVPAMPLDTCVAM 81 (312)
T ss_pred CCEEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccCCCCCChhhhhhh
Confidence 57899999999998754 233446678899999999999999999999999997421 1 1111 1245556665443
Q ss_pred ----HHHHHHHHHHHHHHHHcCCCeeE-----Eeceecc---------------------------------ccchhH--
Q 019877 164 ----LATVMNAIFLQATMESIGIPTRV-----QTAFRMS---------------------------------EVAEPY-- 199 (334)
Q Consensus 164 ----la~~~n~~Lv~~~L~~~Gi~a~~-----l~~~~~~---------------------------------~~~~~~-- 199 (334)
.+-.++..|-. .|..++++... +...+.. |.++.|
T Consensus 82 sqg~iGy~~~q~l~~-~l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~rr 160 (312)
T PRK12686 82 SQGMIGYWLQNALNN-ELTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRR 160 (312)
T ss_pred ccchhhHHHHHHHHH-HHHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCeEE
Confidence 33344444433 36666754321 1111100 001111
Q ss_pred ----------HHHH-HHHHHhCCCEEEEeCCCCC-------------cccChHHHHHHHHHHcCCcEEEEeecCCccccC
Q 019877 200 ----------IRRR-AVRHLEKGRVVIFAAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDD 255 (334)
Q Consensus 200 ----------i~~~-i~~lL~~G~IPVi~g~~g~-------------~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~ 255 (334)
++.+ +..+|++|+|||.+++.|+ .++|+|.+|++||.+++||+|+|+|||||||++
T Consensus 161 vV~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~ 240 (312)
T PRK12686 161 VVPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFIN 240 (312)
T ss_pred eeCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccC
Confidence 2333 5679999999987754221 257999999999999999999999999999995
Q ss_pred CCCCCCCCcccccccHHHHhhC--------CCCcchHHHHHHHHhC--CCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 256 NPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQEN--NIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 256 dP~~~p~aklI~~Is~~e~~~~--------g~~v~k~~Aa~~a~~~--Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
|+ .|++++|++++.+|+.++ |.|.+|++||..+.+. |.+++|++ ++.+.++|+|+ .||+|.
T Consensus 241 -~~-~p~ak~I~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i~~aL~G~-~GT~I~ 311 (312)
T PRK12686 241 -FN-KPNQQKLDDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITS---LEQAKEALAGN-AGTHIT 311 (312)
T ss_pred -CC-CCCCeECCccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence 53 578999999999887543 5588899999998875 46788887 67888999988 799995
No 70
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=99.95 E-value=1.9e-26 Score=245.00 Aligned_cols=217 Identities=21% Similarity=0.210 Sum_probs=166.8
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHc-cc--C-------------
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-GN--S------------- 151 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~-~~--~------------- 151 (334)
-|+++|.||||+++.+ .+.++++++.|....+.+ +++|.++ |.+.+....+ .. .
T Consensus 9 ~M~~~V~KFGGtSv~~-------~e~i~~v~~iI~~~~~~~--~vVVVSA~~~~Td~L~~~~~~~~~~~~~~~~~l~~i~ 79 (810)
T PRK09466 9 AMGRQLHKFGGSSLAD-------AKCYRRVAGILAEYSQPD--DLVVVSAAGKTTNQLISWLKLSQTDRLSAHQVQQTLR 79 (810)
T ss_pred cceeEEEEECccccCC-------HHHHHHHHHHHhhhccCC--EEEEEcCCCCCHHHHHHHHHHhhcCchhHHHHHHHHH
Confidence 3567999999999986 578999999887654433 5666666 5444332111 00 0
Q ss_pred ------------------------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceecccc
Q 019877 152 ------------------------------------GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV 195 (334)
Q Consensus 152 ------------------------------------gl~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~ 195 (334)
.++.+..|.+.++||.+++.|++.+|++.|+++.+++++++...
T Consensus 80 ~~h~~~~~~L~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~~ 159 (810)
T PRK09466 80 RYQQDLIEGLLPAEQARSLLSRLISDLERLAALLDGGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRA 159 (810)
T ss_pred HHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHhhccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHheec
Confidence 01222334555679999999999999999999999887654211
Q ss_pred ---chhHH-----HHHHHHHHhC--CCEEEEeCCCC---------CcccChHHHHHHHHHHcCCcEEEEeecCCccccCC
Q 019877 196 ---AEPYI-----RRRAVRHLEK--GRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 256 (334)
Q Consensus 196 ---~~~~i-----~~~i~~lL~~--G~IPVi~g~~g---------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~d 256 (334)
....+ .+.+.++++. +.|||++||.| ..++++|+.|+++|.+|+|+++.|||||||||++|
T Consensus 160 ~~~~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taD 239 (810)
T PRK09466 160 ERAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSAD 239 (810)
T ss_pred CCCCCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCC
Confidence 11112 2345555554 48999999743 24689999999999999999999999999999999
Q ss_pred CCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEec
Q 019877 257 PRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 323 (334)
Q Consensus 257 P~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~ 323 (334)
||.+|+|++|++|+|+|+.++ |++++|+++..+|.+.+||++|.|.++|+ ..||+|..
T Consensus 240 Pr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~Ipi~V~ntf~p~---------~~GT~I~~ 300 (810)
T PRK09466 240 PRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPE---------QGSTRIER 300 (810)
T ss_pred cccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCCeEEEecCCCCC---------CCceEEec
Confidence 999999999999999999875 89999999999999999999999998874 56999965
No 71
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.94 E-value=3.3e-26 Score=215.36 Aligned_cols=209 Identities=11% Similarity=0.117 Sum_probs=160.7
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 168 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~~ 168 (334)
..+.+|||+||+++.+ ++.+++++++|+.|+..|.++|||||||++++..-. +.........+. ..
T Consensus 34 ~~~f~VIK~GG~~~~~-------~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~------~~~~~~~~~v~~-~~ 99 (271)
T cd04236 34 WPAFAVLEVDHSVFRS-------LEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS------DLELQAARSRLV-KD 99 (271)
T ss_pred CCCEEEEEEChhhhcC-------chhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc------CCcchheehhHH-HH
Confidence 5688999999999975 357899999999999999999999999998764211 111111112233 67
Q ss_pred HHHHHHHHHHHcCCCeeEEeceec-------cc---cch-hHHHHH-HHHHHhCCCEEEEeCC----CCC-cccChHHHH
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRM-------SE---VAE-PYIRRR-AVRHLEKGRVVIFAAG----TGN-PFFTTDTAA 231 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~-------~~---~~~-~~i~~~-i~~lL~~G~IPVi~g~----~g~-~~~~sD~lA 231 (334)
|..|++. |+++|+++.++++... .+ .++ ..++.+ +..+|+.|+|||+++. +|. ..+++|.+|
T Consensus 100 n~~Lv~~-L~~~G~~A~gl~g~~~~i~a~~~~d~g~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A 178 (271)
T cd04236 100 CKTLVEA-LQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVT 178 (271)
T ss_pred HHHHHHH-HHhCCCCeeeecCccceEEEEEcccCCccceEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHH
Confidence 8888875 9999999988765410 01 111 124544 5789999999999983 233 458999999
Q ss_pred HHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccH-HHHhhC-------CCC---cchHHHHHHHHhCCCcEEEE
Q 019877 232 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY-QEVTSK-------DLS---VMDMTAITLCQENNIPVVVF 300 (334)
Q Consensus 232 a~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~-~e~~~~-------g~~---v~k~~Aa~~a~~~Gi~V~I~ 300 (334)
+.+|.+|+|++|+|+||++|||+++ +++|++|+. +|+.++ |.| +.|++++..++..|++|+|+
T Consensus 179 ~~lA~aL~A~KLIfltd~~GV~~~~------g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~ 252 (271)
T cd04236 179 TAIAKALQPIKVIFLNRSGGLRDQK------HKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVIT 252 (271)
T ss_pred HHHHHHcCCCEEEEEeCCcceECCC------CCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEe
Confidence 9999999999999999999999742 579999995 776543 446 78999999999999999999
Q ss_pred cCCChhHH-HHHHcCCCCceEE
Q 019877 301 NLNQPGNI-AKAIQGERVGTLI 321 (334)
Q Consensus 301 ng~~~~~l-~~~l~g~~~GT~I 321 (334)
+ |+.+ .+++...+.||+|
T Consensus 253 ~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 253 S---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred C---hHHHHHHHhccCCCCCcC
Confidence 8 6665 6899988999986
No 72
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.94 E-value=2e-26 Score=212.26 Aligned_cols=193 Identities=20% Similarity=0.262 Sum_probs=145.7
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHccc-----CCCCCChH---HHHH
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDRSSA---DYIG 162 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~-----~gl~~~~~---d~~~ 162 (334)
++||||||++++++ +.+++++|+.+++.|.++|||||+|++++.. ..++. .+++.... +...
T Consensus 1 ~~ViK~GGs~l~~~---------~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~ 71 (231)
T TIGR00761 1 TIVIKIGGAAISDL---------LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVE 71 (231)
T ss_pred CEEEEEChHHHhcc---------HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHH
Confidence 58999999999862 7889999999999999999999999987653 33331 12221111 2222
Q ss_pred -HHHHHHHHHHHHHHHHHcCCCeeEEeceecc-----c---c-----ch-hHHH-HHHHHHHhCCCEEEEeCCC-----C
Q 019877 163 -MLATVMNAIFLQATMESIGIPTRVQTAFRMS-----E---V-----AE-PYIR-RRAVRHLEKGRVVIFAAGT-----G 221 (334)
Q Consensus 163 -~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~-----~---~-----~~-~~i~-~~i~~lL~~G~IPVi~g~~-----g 221 (334)
++++.+|..+++ +|.++|+++.++++.+.. . . ++ ..++ +.+.++|++|.|||++|.. +
T Consensus 72 ~~~~g~~~~~i~~-~L~~~G~~a~~l~~~~~~~it~~~~~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~~~~~~g~ 150 (231)
T TIGR00761 72 MVLIGQVNKELVA-LLNKHGINAIGLTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVISSLALTAEGQ 150 (231)
T ss_pred HHHhcchHHHHHH-HHHhCCCCcccccCCCCCEEEEEECCCccCCcccceEEEcHHHHHHHHHCCCeEEECCCccCCCCc
Confidence 345578888887 599999999877665421 0 0 11 1233 4467899999999999841 2
Q ss_pred CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CCCcchHHHHHHHHhCC
Q 019877 222 NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENN 294 (334)
Q Consensus 222 ~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~~v~k~~Aa~~a~~~G 294 (334)
..++++|.+|+++|.+|+|++|+|+|||||||++|| +++|++|+++|+.++ |.|..|+++|..+.+.|
T Consensus 151 ~~~l~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~-----~~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~g 225 (231)
T TIGR00761 151 ALNVNADTAAGALAAALGAEKLVLLTDVPGILNGDG-----QSLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGG 225 (231)
T ss_pred EEEeCHHHHHHHHHHHcCCCEEEEEECCCCeecCCC-----CeeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcC
Confidence 346899999999999999999999999999999887 369999999887653 45778999999999999
Q ss_pred Cc-EEE
Q 019877 295 IP-VVV 299 (334)
Q Consensus 295 i~-V~I 299 (334)
++ ++|
T Consensus 226 v~~v~i 231 (231)
T TIGR00761 226 VKSVHI 231 (231)
T ss_pred CCEEEC
Confidence 97 554
No 73
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.94 E-value=1.5e-25 Score=224.75 Aligned_cols=220 Identities=19% Similarity=0.283 Sum_probs=160.9
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCCCChHH---
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLDRSSAD--- 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~~~~~d--- 159 (334)
+.+++|||+||++|.++ .+++++++|+.+.+.|.++|||||||++++.. ...+.. |++.+..+
T Consensus 24 ~~~~~VIk~GG~~l~~~--------~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~ 95 (441)
T PRK05279 24 RGKTFVIMLGGEAIAHG--------NFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKGLRVTDAAALE 95 (441)
T ss_pred CCCEEEEEECchhccCh--------hHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCCcccCCHHHHH
Confidence 35799999999999763 35788999999999999999999999998763 344322 34333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeEEe-----ceecc-------------c---cch-hHHHHH-HHHHHhCCCEEEE
Q 019877 160 YIGMLATVMNAIFLQATMESIGIPTRVQT-----AFRMS-------------E---VAE-PYIRRR-AVRHLEKGRVVIF 216 (334)
Q Consensus 160 ~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~-----~~~~~-------------~---~~~-~~i~~~-i~~lL~~G~IPVi 216 (334)
...+....+|..+.+. |+ .|++++++. ..+.. + .++ ..++.+ +..+|++|+|||+
T Consensus 96 ~~~~~~g~v~~~l~~~-l~-~g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~ipV~ 173 (441)
T PRK05279 96 CVKQAAGELRLDIEAR-LS-MGLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAIVLL 173 (441)
T ss_pred HHHHHHHHHHHHHHHH-Hh-ccCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCeEEE
Confidence 2333334667666554 64 488765432 11110 0 111 113333 5679999999999
Q ss_pred eCC----CCC-cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC----------CCCc
Q 019877 217 AAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----------DLSV 281 (334)
Q Consensus 217 ~g~----~g~-~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~----------g~~v 281 (334)
++. .|. ..+++|.+|+.||.+|+|++|+|+|||||||++ ++++|++++.+++.++ |.|.
T Consensus 174 ~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~ 247 (441)
T PRK05279 174 SPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTA 247 (441)
T ss_pred CCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHH
Confidence 763 233 357999999999999999999999999999963 3689999998776532 4578
Q ss_pred chHHHHHHHHhCCC-cEEEEcCCChhHHHHH-HcCCCCceEEecC
Q 019877 282 MDMTAITLCQENNI-PVVVFNLNQPGNIAKA-IQGERVGTLIGGT 324 (334)
Q Consensus 282 ~k~~Aa~~a~~~Gi-~V~I~ng~~~~~l~~~-l~g~~~GT~I~~~ 324 (334)
.|+++|..+.+.|+ +++|+++..|+.+... +..++.||+|..+
T Consensus 248 ~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~ 292 (441)
T PRK05279 248 RFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVME 292 (441)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecC
Confidence 89999999999999 5999999999998654 5456789999875
No 74
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.94 E-value=6.8e-26 Score=243.48 Aligned_cols=220 Identities=23% Similarity=0.253 Sum_probs=168.2
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHc-c---c-------------
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-G---N------------- 150 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~-~---~------------- 150 (334)
+++++|.||||+++.+ .+.++++++.|++..+.+.++|+|.++ |.+.+....+ . .
T Consensus 6 ~~~~~V~KFGGtSv~~-------~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~ 78 (861)
T PRK08961 6 TDRWVVLKFGGTSVSR-------RHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGAGDSASRVAAIRQR 78 (861)
T ss_pred CCCcEEEEECccccCC-------HHHHHHHHHHHHhhcccCCCEEEEEeCCCCchHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4688999999999986 568999999998766667888888888 4444432111 0 0
Q ss_pred -------CC--------------------------CCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceecc---c
Q 019877 151 -------SG--------------------------LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS---E 194 (334)
Q Consensus 151 -------~g--------------------------l~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~---~ 194 (334)
.+ +.++..|.+...|+++++.|++.+|++.|+++.++++++.. +
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~ 158 (861)
T PRK08961 79 HRELLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALP 158 (861)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecC
Confidence 00 01122233334788999999999999999999988876431 1
Q ss_pred ---c--chhH--------HHHHH-HHHHhCC-CEEEEeCCCC---------CcccChHHHHHHHHHHcCCcEEEEeecCC
Q 019877 195 ---V--AEPY--------IRRRA-VRHLEKG-RVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVD 250 (334)
Q Consensus 195 ---~--~~~~--------i~~~i-~~lL~~G-~IPVi~g~~g---------~~~~~sD~lAa~lA~~l~Ad~LiilTDVd 250 (334)
. ..++ .++.+ ..+++.+ .|||++||.| +.+++||++|+++|.+++||+|++|||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~ 238 (861)
T PRK08961 159 QPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVP 238 (861)
T ss_pred ccccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 0 0112 12223 2344544 5999999743 34689999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 251 GVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 251 GVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
|||++||+.+|++++|++|+|+|+.++ |.+++|++|+.+|.+.|||++|.|+++|+ ..||+|..+
T Consensus 239 Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~~---------~~gT~I~~~ 306 (861)
T PRK08961 239 GMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPD---------LSGTSIDGD 306 (861)
T ss_pred ccccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCCC---------CCccEEeCC
Confidence 999999999999999999999998765 88999999999999999999999998773 469999754
No 75
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.94 E-value=1.5e-25 Score=208.97 Aligned_cols=209 Identities=17% Similarity=0.230 Sum_probs=152.5
Q ss_pred EEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCCCChH---HHHHHH
Q 019877 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLDRSSA---DYIGML 164 (334)
Q Consensus 94 VIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~~~~~---d~~~~l 164 (334)
|||+||+.+++ .+.+++++|+.|++.|.++|||||||++++.+ ...+.. |++.+.. +...+.
T Consensus 2 ViKiGG~~~~~---------~l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~a 72 (248)
T cd04252 2 VIKVGGAIIED---------DLDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKV 72 (248)
T ss_pred EEEEChhhhhc---------cHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHH
Confidence 89999999875 26889999999999999999999999997663 232221 2222222 233433
Q ss_pred HHHHHHHHHHHHHHHcCCCeeEEeceec-------ccc---ch-hHHHH-HHHHHHhCCCEEEEeCC----CCC-cccCh
Q 019877 165 ATVMNAIFLQATMESIGIPTRVQTAFRM-------SEV---AE-PYIRR-RAVRHLEKGRVVIFAAG----TGN-PFFTT 227 (334)
Q Consensus 165 a~~~n~~Lv~~~L~~~Gi~a~~l~~~~~-------~~~---~~-~~i~~-~i~~lL~~G~IPVi~g~----~g~-~~~~s 227 (334)
...+|..+++. |.++|+++.++++..+ .+. ++ ..++. .+..+|+.|+|||++|. .|. .++++
T Consensus 73 l~~vn~~iv~~-l~~~g~~a~~l~~~~~~a~~~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvna 151 (248)
T cd04252 73 FLEENLKLVEA-LERNGARARPITSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNA 151 (248)
T ss_pred HHHHHHHHHHH-HHhCCCCcccccCceEEEEECcCccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECH
Confidence 34788888886 9999999987654211 011 11 12343 35789999999999983 233 45899
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHH-HHhhC-------CCCcchHHHHHHHHhC--CC-c
Q 019877 228 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ-EVTSK-------DLSVMDMTAITLCQEN--NI-P 296 (334)
Q Consensus 228 D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~-e~~~~-------g~~v~k~~Aa~~a~~~--Gi-~ 296 (334)
|.+|+.+|.+|+|++|+|+|||||||+++ +++|++++.. +..++ |.|..|++++..+.+. ++ .
T Consensus 152 D~~A~~lA~aL~a~kli~ltdv~GV~~~~------g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~ 225 (248)
T cd04252 152 DVAAGELARVLEPLKIVFLNETGGLLDGT------GKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSS 225 (248)
T ss_pred HHHHHHHHHHcCCCeEEEEECCcccCCCC------CCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceE
Confidence 99999999999999999999999999742 5789999863 43221 5578899999888887 44 4
Q ss_pred EEEEcCCChhHH-HHHHcCCCCceEE
Q 019877 297 VVVFNLNQPGNI-AKAIQGERVGTLI 321 (334)
Q Consensus 297 V~I~ng~~~~~l-~~~l~g~~~GT~I 321 (334)
++|++ ++.+ .+++..++.||+|
T Consensus 226 v~i~~---~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 226 VSITS---PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred EEEEC---CchHHHHHhcCCCCCccC
Confidence 88887 4666 4677777899986
No 76
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.93 E-value=3.4e-25 Score=236.49 Aligned_cols=216 Identities=25% Similarity=0.299 Sum_probs=165.4
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHc-c---cC---------------
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-G---NS--------------- 151 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~-~---~~--------------- 151 (334)
+.|.||||+++.+ .+.++.+++.|....+. .++|+|+++ |.+.+....+ . ..
T Consensus 1 m~V~KFGGtSv~~-------~~~i~~v~~iI~~~~~~-~~~vVVVSA~~~vTd~L~~~~~~~~~~~~~~~~~~~~~~~~h 72 (819)
T PRK09436 1 MRVLKFGGTSVAN-------AERFLRVADIIESNARQ-EQVAVVLSAPAKVTNHLVAMIEKAAKGDDAYPEILDAERIFH 72 (819)
T ss_pred CEEEEeCccccCC-------HHHHHHHHHHHHhhccc-CCEEEEEcCCcCcHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3699999999986 67899999988876544 567777778 4444332111 0 00
Q ss_pred ----------------------------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEecee
Q 019877 152 ----------------------------------------GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFR 191 (334)
Q Consensus 152 ----------------------------------------gl~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~ 191 (334)
.+.++..|.+.++||++++.+++.+|++.|+++.++++++
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~ 152 (819)
T PRK09436 73 ELLDGLAAALPGFDLAQLKAKVDQEFAQLKDILHGISLLGECPDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPRE 152 (819)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHH
Confidence 0011223444557899999999999999999999888654
Q ss_pred cccc----ch-----hHHHHHHHHH-HhCCCEEEEeCCCC---------CcccChHHHHHHHHHHcCCcEEEEeecCCcc
Q 019877 192 MSEV----AE-----PYIRRRAVRH-LEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGV 252 (334)
Q Consensus 192 ~~~~----~~-----~~i~~~i~~l-L~~G~IPVi~g~~g---------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGV 252 (334)
..-. .+ ....+.+.++ .+.+.|||++||.+ ..++++|++|+++|.+++||.|++|||||||
T Consensus 153 ~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGv 232 (819)
T PRK09436 153 LLLADGHYLESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGV 232 (819)
T ss_pred eEEecCCCCCceechHhhHHHHHHHHhcCCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCce
Confidence 3111 11 1122345554 45689999999743 2357899999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 253 YDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 253 yt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
|++||+.+|+|++|++++|+|+.++ |.+++|++|+.+|.++|||++|.|+++|+ ..||+|..+
T Consensus 233 yt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi~i~n~~~p~---------~~GT~I~~~ 298 (819)
T PRK09436 233 YTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQ---------APGTLIGAE 298 (819)
T ss_pred ECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCCceEEEccCCCCC---------CCceEEEec
Confidence 9999999999999999999999874 88999999999999999999999998875 469999764
No 77
>PRK12354 carbamate kinase; Reviewed
Probab=99.93 E-value=4.8e-24 Score=203.02 Aligned_cols=225 Identities=24% Similarity=0.266 Sum_probs=151.9
Q ss_pred eEEEEeCCccccCCC-CCCCC--HHHHHHHHHHHHHHHhCCCeEEEEECCchHH-HHHHHcccCC-CCCChHHH-----H
Q 019877 92 RVLLKVSGEALAGDH-TQNID--PKITMAIAREVASVTRLGIEVAIVVGGGNIF-RGASAAGNSG-LDRSSADY-----I 161 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~-~~~l~--~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~-~g~~~~~~~g-l~~~~~d~-----~ 161 (334)
++||||||++|.+++ +.+.. .+.++..++.|+.+.+ |+++||+||+|++. .-+.+...+. .+..+.|. .
T Consensus 2 ~iVialGGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~pl~~~~a~sq 80 (307)
T PRK12354 2 RIVVALGGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYKDVTPYPLDVLGAETE 80 (307)
T ss_pred eEEEEeccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhcCCCCCCcchhccccc
Confidence 689999999999864 44555 3488899999999987 89999999999983 2222222111 12233333 2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCee-EEeceeccc--------------------------------cch----------h
Q 019877 162 GMLATVMNAIFLQATMESIGIPTR-VQTAFRMSE--------------------------------VAE----------P 198 (334)
Q Consensus 162 ~~la~~~n~~Lv~~~L~~~Gi~a~-~l~~~~~~~--------------------------------~~~----------~ 198 (334)
++.+-.++..|-.. |....+.++ .+...+..| .++ |
T Consensus 81 g~iGy~l~q~l~~~-l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~dg~g~rrVv~SP~P 159 (307)
T PRK12354 81 GMIGYMLEQELGNL-LPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPDGDYFRRVVPSPRP 159 (307)
T ss_pred chHHHHHHHHHHHH-hcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeecCCceEEEecCCCC
Confidence 33444444444333 433333222 111111100 000 0
Q ss_pred --HHH-HHHHHHHhCCCEEEEeCCCCC--------------cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCC
Q 019877 199 --YIR-RRAVRHLEKGRVVIFAAGTGN--------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP 261 (334)
Q Consensus 199 --~i~-~~i~~lL~~G~IPVi~g~~g~--------------~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p 261 (334)
.++ +.+..+|++|+|||.+|+.|. .++|+|.+|++||.+++||+|+|+|||||||++++ .|
T Consensus 160 ~~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p 237 (307)
T PRK12354 160 KRIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KP 237 (307)
T ss_pred cceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CC
Confidence 022 335789999997666543221 15789999999999999999999999999999753 57
Q ss_pred CCcccccccHHHHhhC----CCCcchHHHHHHHHhCCC-cEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 262 NARLLDTLTYQEVTSK----DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 262 ~aklI~~Is~~e~~~~----g~~v~k~~Aa~~a~~~Gi-~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
++++|++++.+|+.++ |.|.+|++||..+.+.+. +++|. .++.+.++|+|+ .||+|.+.
T Consensus 238 ~~k~i~~it~~e~~~~~f~~GgM~pKV~AA~~~~~~gg~~viI~---~~~~l~~al~G~-~GT~I~~~ 301 (307)
T PRK12354 238 TQRAIAQATPDELRELGFAAGSMGPKVEAACEFVRATGKIAGIG---SLEDIQAILAGE-AGTRISPE 301 (307)
T ss_pred CCeECCCCCHHHHHhhCCCcCChHHHHHHHHHHHHhCCCEEEEC---CHHHHHHHHCCC-CceEEecC
Confidence 8899999999888764 568899999977665544 68874 367789999987 79999863
No 78
>PRK09411 carbamate kinase; Reviewed
Probab=99.91 E-value=5.7e-23 Score=194.32 Aligned_cols=226 Identities=21% Similarity=0.244 Sum_probs=157.8
Q ss_pred CCeEEEEeCCccccCCC-CCCCCHH--HHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHc--ccCCCCCChHHHHHHH
Q 019877 90 WQRVLLKVSGEALAGDH-TQNIDPK--ITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA--GNSGLDRSSADYIGML 164 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~-~~~l~~~--~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~--~~~gl~~~~~d~~~~l 164 (334)
|+++||.|||++|...+ ..+...+ .++..++.|+.+.+. +++||+||.|++.-..... .....+..+.|..++.
T Consensus 1 ~~~iVvAlGGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~~~~~~~pld~~~a~ 79 (297)
T PRK09411 1 MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAE 79 (297)
T ss_pred CCeEEEEcCchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhhcCCCCCCchhhhhh
Confidence 36899999999998753 3344444 788899999999988 9999999999986322111 1112344556654443
Q ss_pred HHHHHHHHHHHHHHHcCCCeeEEece-----eccc--------------------------------cchhH--------
Q 019877 165 ATVMNAIFLQATMESIGIPTRVQTAF-----RMSE--------------------------------VAEPY-------- 199 (334)
Q Consensus 165 a~~~n~~Lv~~~L~~~Gi~a~~l~~~-----~~~~--------------------------------~~~~~-------- 199 (334)
..-+-.++++..|...+++....+.. +..| .++.|
T Consensus 80 sqG~iGy~l~q~l~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP~ 159 (297)
T PRK09411 80 SQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQ 159 (297)
T ss_pred cccHHHHHHHHHHHHcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCCC
Confidence 33233456666677667644222211 1000 01001
Q ss_pred ----HH-HHHHHHHhCCCEEEEeCCCC----------CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCc
Q 019877 200 ----IR-RRAVRHLEKGRVVIFAAGTG----------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNAR 264 (334)
Q Consensus 200 ----i~-~~i~~lL~~G~IPVi~g~~g----------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~ak 264 (334)
++ +.++.+|++|+|||.+|+.| ..++|+|.+|+.||.+|+||+|+|+|||||||++++ .|+++
T Consensus 160 P~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~ 237 (297)
T PRK09411 160 PRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWG--TPQQR 237 (297)
T ss_pred CcceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCc
Confidence 23 33578999999977765332 236899999999999999999999999999998653 67889
Q ss_pred ccccccHHHHhhC----CCCcchHHHHHHHHh-CCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 265 LLDTLTYQEVTSK----DLSVMDMTAITLCQE-NNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 265 lI~~Is~~e~~~~----g~~v~k~~Aa~~a~~-~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
+|++++.+|+.++ |.|.+|+++|..+.+ .|.+++|.+ ++.+.++++|+ .||+|.
T Consensus 238 ~I~~it~~e~~~~~~~~GgM~pKVeAA~~~v~~~g~~a~I~~---l~~~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 238 AIRHATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGA---LSRIEETLAGE-AGTCIS 296 (297)
T ss_pred CCCCcCHHHHHHhccCCCCcHHHHHHHHHHHHhCCCeEEECC---hhHHHHHHCCC-CCeEEe
Confidence 9999999988653 678899999965555 466788864 67788999998 799985
No 79
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.90 E-value=1.3e-22 Score=200.64 Aligned_cols=195 Identities=19% Similarity=0.260 Sum_probs=143.7
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCCCChHHHH-
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLDRSSADYI- 161 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~~~~~d~~- 161 (334)
..+++|||+||+++.+. +..++++|+.|+..|.++|||||||++++.. ...+.. |++.+..+.+
T Consensus 35 ~~~~~VIKiGG~~l~~~---------~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~~~v~G~RVTd~~tl~ 105 (398)
T PRK04531 35 AERFAVIKVGGAVLRDD---------LEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEKETVNGLRVTSPEALA 105 (398)
T ss_pred CCcEEEEEEChHHhhcC---------HHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCcEEECCEecCCHHHHH
Confidence 45999999999998742 5788999999999999999999999998763 343321 3333332222
Q ss_pred --HHHHHHHHHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCC----CCCc-ccChHHHHHHH
Q 019877 162 --GMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALR 234 (334)
Q Consensus 162 --~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~----~g~~-~~~sD~lAa~l 234 (334)
.+.....|..|++. +..+|+.|.|||+++. .|.. .+++|.+|+.+
T Consensus 106 vv~~~l~~vn~~lv~~----------------------------I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~L 157 (398)
T PRK04531 106 IVRKVFQRSNLDLVEA----------------------------VESSLRAGSIPVIASLGETPSGQILNINADVAANEL 157 (398)
T ss_pred HHHHHHHHHHHHHHHH----------------------------HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHH
Confidence 22112333333322 4678999999999873 2443 57999999999
Q ss_pred HHHcCCcEEEEeecCCccccCCCCCCCCCcccccccH-HHHhhC-------CCCcchHHHHHHHHhCCCcEEEEcCCChh
Q 019877 235 CAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY-QEVTSK-------DLSVMDMTAITLCQENNIPVVVFNLNQPG 306 (334)
Q Consensus 235 A~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~-~e~~~~-------g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~ 306 (334)
|.+|+|++|+|+|||+|||+.| +++|++|+. ++...+ |.|..|++++..|.+....++++....|+
T Consensus 158 A~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~ 231 (398)
T PRK04531 158 VSALQPYKIIFLTGTGGLLDAD------GKLISSINLSTEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPS 231 (398)
T ss_pred HHHcCCCEEEEEECCCCccCCC------CCCcccCCHHHHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence 9999999999999999999743 678999986 344322 45778999999988654457777777899
Q ss_pred HHH-HHHcCCCCceEEecCCC
Q 019877 307 NIA-KAIQGERVGTLIGGTWN 326 (334)
Q Consensus 307 ~l~-~~l~g~~~GT~I~~~~~ 326 (334)
.+. +++..++.||+|....+
T Consensus 232 ~Ll~eLft~~G~GT~I~~g~~ 252 (398)
T PRK04531 232 DLAKELFTHKGSGTLVRRGER 252 (398)
T ss_pred HHHHHHccCCCCCeEEecCCc
Confidence 885 46666778999987544
No 80
>PLN02825 amino-acid N-acetyltransferase
Probab=99.90 E-value=2.6e-22 Score=203.47 Aligned_cols=223 Identities=16% Similarity=0.206 Sum_probs=164.7
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCCCChHH---
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLDRSSAD--- 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~~~~~d--- 159 (334)
+.+++|||+||+++.++ .+.+++.+|+.|+..|.++|||||||++++.. ...+.. |++.+..+
T Consensus 16 rgktfVIk~gG~~l~~~--------~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RVTd~~~L~ 87 (515)
T PLN02825 16 RGSTFVVVISGEVVAGP--------HLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRITDSAALQ 87 (515)
T ss_pred CCCEEEEEECchhhcCc--------hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHH
Confidence 57899999999999752 47889999999999999999999999998773 443321 44433333
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHcCCCe----eEEeceec--------c-----cc---ch-hHHHHH-HHHHHh
Q 019877 160 YIGMLATVMNAIFLQA--------TMESIGIPT----RVQTAFRM--------S-----EV---AE-PYIRRR-AVRHLE 209 (334)
Q Consensus 160 ~~~~la~~~n~~Lv~~--------~L~~~Gi~a----~~l~~~~~--------~-----~~---~~-~~i~~~-i~~lL~ 209 (334)
....++..+|..+.+. .|+++|+++ ..++..+. . |. ++ ..++.+ +..+|+
T Consensus 88 ~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~L~ 167 (515)
T PLN02825 88 ASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKERLD 167 (515)
T ss_pred HHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHHHHh
Confidence 3334666778777764 268888887 33433221 0 11 11 234544 567999
Q ss_pred CCCEEEEeCC----CCCc-ccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC---C---
Q 019877 210 KGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D--- 278 (334)
Q Consensus 210 ~G~IPVi~g~----~g~~-~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g--- 278 (334)
.|.|||+++. +|.. .+++|.+|+.+|.+|+||+|||+||++ ++++ ++++|++++.+|++++ +
T Consensus 168 ~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~~~~~~ 240 (515)
T PLN02825 168 SNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIRKRAKQ 240 (515)
T ss_pred CCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHHhhhhc
Confidence 9999999982 4554 489999999999999999999999977 5543 2578899988876532 0
Q ss_pred ---------------------CC-------------------------------c-------------------------
Q 019877 279 ---------------------LS-------------------------------V------------------------- 281 (334)
Q Consensus 279 ---------------------~~-------------------------------v------------------------- 281 (334)
.. .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (515)
T PLN02825 241 SEIAANYVKAVGGEDYSYSLGLDSVNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEERLSRLNGYL 320 (515)
T ss_pred chhhhhhhhhccccccccccccccccccccccccccccccccccccccccccccCcccccccccccccchhhchhhhhHH
Confidence 00 0
Q ss_pred chHHHHHHHHhCCCc-EEEEcCCChhHH-HHHHcCCCCceEEecCCC
Q 019877 282 MDMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGTWN 326 (334)
Q Consensus 282 ~k~~Aa~~a~~~Gi~-V~I~ng~~~~~l-~~~l~g~~~GT~I~~~~~ 326 (334)
.++.+|..|.+.||+ +|++++..++.| .+++..+++||+|..+.-
T Consensus 321 ~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~~~~ 367 (515)
T PLN02825 321 SELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIASDMY 367 (515)
T ss_pred HHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCceeEeccChH
Confidence 037788999999997 999999999997 689999999999987543
No 81
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=99.89 E-value=1.1e-22 Score=194.79 Aligned_cols=162 Identities=23% Similarity=0.292 Sum_probs=131.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceeccc-----cchhHHH----HHHHHH-----HhCCCEEEEeCCCC
Q 019877 156 SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE-----VAEPYIR----RRAVRH-----LEKGRVVIFAAGTG 221 (334)
Q Consensus 156 ~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~-----~~~~~i~----~~i~~l-----L~~G~IPVi~g~~g 221 (334)
+..|++-.+++.++.++++++|+.+|.++...+.+.+.. +....+. ..+.++ ...+.+||++||-|
T Consensus 190 RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvTGf~G 269 (559)
T KOG0456|consen 190 RTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVTGFLG 269 (559)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccchhHHHHHHHHHHHhcccccccCCccceEeeccc
Confidence 445555667888999999999999999999777654422 2111111 111122 14689999999744
Q ss_pred ----------CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHH
Q 019877 222 ----------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAIT 288 (334)
Q Consensus 222 ----------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~ 288 (334)
...+.+|..|+.+|.++++|++.+|+|||||++.||+++|.|++++.++++|+.++ |..++|+.+++
T Consensus 270 k~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~ 349 (559)
T KOG0456|consen 270 KGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHPFSMR 349 (559)
T ss_pred cCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHhhhhhhccccccc
Confidence 34688999999999999999999999999999999999999999999999999876 88999999999
Q ss_pred HHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecCCC
Q 019877 289 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 326 (334)
Q Consensus 289 ~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~~~ 326 (334)
++.+..||++|.|..+|- ..||.|.++.+
T Consensus 350 ~~~~~~IPvRvKN~~NP~---------~~GTvI~~d~~ 378 (559)
T KOG0456|consen 350 PAREGRIPVRVKNSYNPT---------APGTVITPDRD 378 (559)
T ss_pred hhhccCcceEeecCCCCC---------CCceEeccchh
Confidence 999999999999987774 57999998654
No 82
>PRK09181 aspartate kinase; Validated
Probab=99.88 E-value=1.1e-21 Score=197.93 Aligned_cols=156 Identities=11% Similarity=0.112 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHh----CCCEEEEeCCCC--------CcccC
Q 019877 159 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE----KGRVVIFAAGTG--------NPFFT 226 (334)
Q Consensus 159 d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~----~G~IPVi~g~~g--------~~~~~ 226 (334)
|.+...||++++.|++.+|++.|+++.++++..........+.+++.+.++ .+.|||++||.+ +.+++
T Consensus 140 D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTLGRGG 219 (475)
T PRK09181 140 EMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDDDDPLTLDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTFDRGY 219 (475)
T ss_pred HHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccCCcccchHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEecCCCh
Confidence 455567899999999999999999999865432211111123344555444 578999999743 34689
Q ss_pred hHHHHHHHHHHcCCcEEEEeecCCccccCCCCCC--CCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEc
Q 019877 227 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFN 301 (334)
Q Consensus 227 sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~--p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~n 301 (334)
+|+.|+++|.+|+|+++.+||||+ ||++|||++ |+|++|++|+|+|+.++ |++++|+++..+|.+.+||++|.|
T Consensus 220 SDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~n 298 (475)
T PRK09181 220 SEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKN 298 (475)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEec
Confidence 999999999999999999999997 999999999 69999999999999875 899999999999999999999999
Q ss_pred CCChhHHHHHHcCCCCceEEecC
Q 019877 302 LNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 302 g~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
.++|+ ..||+|...
T Consensus 299 t~~p~---------~~GT~I~~~ 312 (475)
T PRK09181 299 TFEPE---------HPGTLITKD 312 (475)
T ss_pred CCCCC---------CCCeEEecC
Confidence 98774 469999754
No 83
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.86 E-value=2.6e-20 Score=173.14 Aligned_cols=227 Identities=25% Similarity=0.353 Sum_probs=158.4
Q ss_pred CeEEEEeCCccccCCCC-CC--CCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHH----cc-cCCCCCChHHHHH
Q 019877 91 QRVLLKVSGEALAGDHT-QN--IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA----AG-NSGLDRSSADYIG 162 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~-~~--l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~----~~-~~gl~~~~~d~~~ 162 (334)
+++||.|||++|..+++ .+ ...+.++..+++|+.+.+.|+++||.||.|++.-.... +. ..+.+..+.|...
T Consensus 1 ~~iVvALGGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~~~p~~PLd~~~ 80 (312)
T COG0549 1 KRIVVALGGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEKGVPAYPLDVLV 80 (312)
T ss_pred CeEEEEecchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccccCCCCccHHHHh
Confidence 47999999999987642 12 33567888999999999999999999999998632211 11 1234556666644
Q ss_pred HHHHHHHHHHHHHH----HHHcCCCee---EEe--ceeccc---------------------------------cchhH-
Q 019877 163 MLATVMNAIFLQAT----MESIGIPTR---VQT--AFRMSE---------------------------------VAEPY- 199 (334)
Q Consensus 163 ~la~~~n~~Lv~~~----L~~~Gi~a~---~l~--~~~~~~---------------------------------~~~~~- 199 (334)
+...-+-.++++.+ |..+|++.- .++ ..|..| -+..|
T Consensus 81 AmsQG~IGy~l~qal~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~R 160 (312)
T COG0549 81 AMSQGMIGYMLQQALRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGYR 160 (312)
T ss_pred HhhhhHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCCee
Confidence 43222222333332 566786421 111 111100 00001
Q ss_pred -----------HH-HHHHHHHhCCCEEEEeCCCCCc-------------ccChHHHHHHHHHHcCCcEEEEeecCCcccc
Q 019877 200 -----------IR-RRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYD 254 (334)
Q Consensus 200 -----------i~-~~i~~lL~~G~IPVi~g~~g~~-------------~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt 254 (334)
++ +.|+.+++.|.++|..|+.|.+ ++|.|..++.||.+++||.|+|+||||+||-
T Consensus 161 RVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~ 240 (312)
T COG0549 161 RVVPSPKPVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYV 240 (312)
T ss_pred EecCCCCCccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchhee
Confidence 22 3467899999999998865543 4799999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccHHHHhhC--------CCCcchHHHHH-HHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEec
Q 019877 255 DNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAIT-LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 323 (334)
Q Consensus 255 ~dP~~~p~aklI~~Is~~e~~~~--------g~~v~k~~Aa~-~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~ 323 (334)
...+ |+.+.|++++.+|+.+. |.|.+|++||. ++...|-+++|.+ .+++.++|.|+ .||.|.+
T Consensus 241 n~gk--p~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~ 312 (312)
T COG0549 241 NFGK--PNQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP 312 (312)
T ss_pred cCCC--ccchhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECc---HHHHHHHhccC-CCcEecC
Confidence 8754 67789999999996542 67889999985 5555466788876 67788999987 6999864
No 84
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=99.86 E-value=4.5e-21 Score=182.13 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceeccc---cc-hhHHHHHHHHHHhCCCEEEEeCCCC--------Cccc
Q 019877 158 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE---VA-EPYIRRRAVRHLEKGRVVIFAAGTG--------NPFF 225 (334)
Q Consensus 158 ~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~---~~-~~~i~~~i~~lL~~G~IPVi~g~~g--------~~~~ 225 (334)
.|.+..+||++++.+++.+|++.|+++.++++..... .. +..+.+.+..+...+.|||++||.+ +.++
T Consensus 133 rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~~~t~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itTLGRG 212 (304)
T cd04248 133 RELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSGDMTLDERISEAFRDIDPRDELPIVTGYAKCAEGLMREFDRG 212 (304)
T ss_pred HHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccccCCCCcHHHHHHHHHhhccCCcEEEeCCccCCCCCCEEEcCCC
Confidence 3445567888999999999999999999865533221 11 1112111222223578999999742 3468
Q ss_pred ChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCC--CCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEE
Q 019877 226 TTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVF 300 (334)
Q Consensus 226 ~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~--p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ 300 (334)
++|+.|+.+|.+++|+++.|||||+ ||++||+++ +++++|++++|+|+.++ |++++|++|+++|.+.+||++|.
T Consensus 213 GSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IPi~Vk 291 (304)
T cd04248 213 YSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVK 291 (304)
T ss_pred cHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCeEEEe
Confidence 9999999999999999999999996 999999999 68999999999999875 89999999999999999999999
Q ss_pred cCCChhHHHHHHcCCCCceEEe
Q 019877 301 NLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 301 ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
|.++|+ ..||+|.
T Consensus 292 ntf~P~---------~~GTlIt 304 (304)
T cd04248 292 NTFEPD---------HPGTLIT 304 (304)
T ss_pred cCCCCC---------CCCceeC
Confidence 998875 5699984
No 85
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=99.84 E-value=1.9e-19 Score=157.29 Aligned_cols=197 Identities=22% Similarity=0.323 Sum_probs=147.0
Q ss_pred EEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcc-cCCCCCChHHHHHHHHHHHHHHH
Q 019877 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIF 172 (334)
Q Consensus 94 VIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~-~~gl~~~~~d~~~~la~~~n~~L 172 (334)
|||.||+...+ ....+-+.+. +.+.++++|.|||.|++-.+... ..++.....+++...++.+...+
T Consensus 3 vVk~~Gs~~~~---------~~~~~~~ale---~~~~~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~Md~~G~~ 70 (212)
T COG2054 3 VVKKGGSGVAE---------RAAAVKEALE---NLQRSILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITAMDQYGFY 70 (212)
T ss_pred eEEecCCChHH---------HHHHHHHHHH---hhcceEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 77888886543 2233333333 33457999999999998866553 35788888888888887777788
Q ss_pred HHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCC------C---CCcccChHHHHHHHHHHcCCcEE
Q 019877 173 LQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG------T---GNPFFTTDTAAALRCAEINAEVV 243 (334)
Q Consensus 173 v~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~------~---g~~~~~sD~lAa~lA~~l~Ad~L 243 (334)
++..........+ .+ + ..-.+.+.+||+-|. + -.|-+++|.+|.++|++++|.++
T Consensus 71 lad~~~~~~~~tv----~e------p------~~~i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~v 134 (212)
T COG2054 71 LADLASRFVTDTV----TE------P------EDGIKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEV 134 (212)
T ss_pred HHhhhccccccee----ec------h------hhccCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEE
Confidence 7764333332221 01 1 122345666776552 1 13568999999999999999999
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCC-CceEEe
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGER-VGTLIG 322 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~-~GT~I~ 322 (334)
++.|||||||+.+| +++++++|...|+.. |....+...-+.+.+++++++|+||..|+++..++.|+. +||+|.
T Consensus 135 v~aTDVdGI~~~~~----~~kLv~eI~A~dl~~-~~t~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Iv 209 (212)
T COG2054 135 VKATDVDGIYEEDP----KGKLVREIRASDLKT-GETSVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIV 209 (212)
T ss_pred EEEecCCcccccCC----cchhhhhhhHhhccc-CcccccchhhHHHHHcCCceEEECCCCHHHHHHHHhccccceEEEe
Confidence 99999999999876 469999999888765 667788888899999999999999999999999999854 699997
Q ss_pred c
Q 019877 323 G 323 (334)
Q Consensus 323 ~ 323 (334)
+
T Consensus 210 g 210 (212)
T COG2054 210 G 210 (212)
T ss_pred C
Confidence 5
No 86
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=98.59 E-value=4.6e-07 Score=90.72 Aligned_cols=168 Identities=16% Similarity=0.260 Sum_probs=105.1
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHc-ccC-----CCCCChHHHHHH
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GNS-----GLDRSSADYIGM 163 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~-~~~-----gl~~~~~d~~~~ 163 (334)
.+.+|+|-|+. +.. +.++.++..++-++..|.+.|||||.|++.+..-.. +.. +.+.+..+.+++
T Consensus 95 q~fvV~~~g~~-~~t--------~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~ 165 (520)
T KOG2436|consen 95 QKFVVIKSGEA-IST--------SLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQA 165 (520)
T ss_pred ceEEEEecccc-ccc--------chHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHH
Confidence 44566665555 432 246788899999999999999999999998873211 111 223333333333
Q ss_pred H----HHHHHHHHHHHHHHHcCCCeeEEecee-------ccc--c--chhH--------HH-HHHHHHHhCCCEEEEeC-
Q 019877 164 L----ATVMNAIFLQATMESIGIPTRVQTAFR-------MSE--V--AEPY--------IR-RRAVRHLEKGRVVIFAA- 218 (334)
Q Consensus 164 l----a~~~n~~Lv~~~L~~~Gi~a~~l~~~~-------~~~--~--~~~~--------i~-~~i~~lL~~G~IPVi~g- 218 (334)
. ...-|..++.. |+++|-.+++.+... ... + ++.| ++ +.+..+++.|.+|++..
T Consensus 166 ~~~~~~~E~n~~lv~n-L~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sl 244 (520)
T KOG2436|consen 166 AKESVSLEANLNLVIN-LSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSL 244 (520)
T ss_pred hhhcchhhhhhHHHHH-HHHhhceeccccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhh
Confidence 2 12233345654 888887776544321 110 0 0111 23 44678999999999865
Q ss_pred ---CCCCcc-cChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHH
Q 019877 219 ---GTGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE 273 (334)
Q Consensus 219 ---~~g~~~-~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e 273 (334)
..|+.. +++|.+|..+|..|+|+++++++|+.=+...+ ++.+.-++..+
T Consensus 245 a~TaSGqvlnvNa~~~a~elA~~L~~~kli~l~d~g~~l~e~------ge~~S~l~l~~ 297 (520)
T KOG2436|consen 245 AATASGQVLNVNADEVAGELALALGPDKLILLMDKGRILKEN------GEDISSLILQE 297 (520)
T ss_pred cccCccceEEeeHHHHhhHHHhccCcceeEEecccccccccC------cccccccccch
Confidence 245544 89999999999999999999999983333433 34555555443
No 87
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=73.50 E-value=10 Score=33.31 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=41.7
Q ss_pred EEeecCCccccCCCC-CCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 244 LKATNVDGVYDDNPR-RNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 244 iilTDVdGVyt~dP~-~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
.+..|||||++++-- .+++++.+...+ .-+..+...+.+.|+++.|+++.....+...++.-+..-+|.
T Consensus 9 ~~v~d~dGv~tdg~~~~~~~g~~~~~~~----------~~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~ 78 (169)
T TIGR02726 9 LVILDVDGVMTDGRIVINDEGIESRNFD----------IKDGMGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHE 78 (169)
T ss_pred EEEEeCceeeECCeEEEcCCCcEEEEEe----------cchHHHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEe
Confidence 357899999996410 112222222222 235677888888899988888777666666665444434443
No 88
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=70.23 E-value=5.3 Score=35.16 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=33.4
Q ss_pred EEeecCCccccCCCCCC--CCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHH
Q 019877 244 LKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 310 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~--p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~ 310 (334)
++.+||||++|+ .+.. ++++.++.. .+.+=..++..++.|+++-|+.|++...+.+
T Consensus 10 Lli~DVDGvLTD-G~ly~~~~Gee~KaF----------nv~DG~Gik~l~~~Gi~vAIITGr~s~ive~ 67 (170)
T COG1778 10 LLILDVDGVLTD-GKLYYDENGEEIKAF----------NVRDGHGIKLLLKSGIKVAIITGRDSPIVEK 67 (170)
T ss_pred EEEEeccceeec-CeEEEcCCCceeeee----------eccCcHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 456899999985 2211 111212211 1223356677788899988888887766643
No 89
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=53.74 E-value=35 Score=29.05 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=30.2
Q ss_pred EEeecCCccccCCCC-CCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHc
Q 019877 244 LKATNVDGVYDDNPR-RNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 244 iilTDVdGVyt~dP~-~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
+++.|+||.+.+++. ..++.+.+..+...+ -.+++.+.+.|+.+.|+.++....+..++.
T Consensus 3 ~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~----------~~~i~~Lk~~G~~i~IvTn~~~~~~~~~l~ 63 (154)
T TIGR01670 3 LLILDVDGVLTDGKIYYTNNGEEIKAFNVRD----------GYGIRCALKSGIEVAIITGRKAKLVEDRCK 63 (154)
T ss_pred EEEEeCceeEEcCeEEECCCCcEEEEEechh----------HHHHHHHHHCCCEEEEEECCCCHHHHHHHH
Confidence 467899999986432 122233344432111 124445555566665555554444444443
No 90
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=53.16 E-value=27 Score=29.36 Aligned_cols=47 Identities=13% Similarity=0.230 Sum_probs=31.4
Q ss_pred CCeEEEEeCCccccCCC-CCCCCHHHHHHHHHHHHHHHhCCCeEEEEEC
Q 019877 90 WQRVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~-~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhG 137 (334)
+|.+++=+-|+++.+++ +...+ +......+.+.++++.|+++++++|
T Consensus 1 ~K~i~~DiDGTL~~~~~~~y~~~-~~~~~~ie~L~~l~~~G~~IiiaTG 48 (126)
T TIGR01689 1 MKRLVMDLDNTITLTENGDYANV-APILAVIEKLRHYKALGFEIVISSS 48 (126)
T ss_pred CCEEEEeCCCCcccCCCCccccc-ccCHHHHHHHHHHHHCCCEEEEECC
Confidence 47889999999876532 11111 1223445778888889999999986
No 91
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=45.25 E-value=1.5e+02 Score=24.72 Aligned_cols=67 Identities=24% Similarity=0.265 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCC
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINA 240 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~A 240 (334)
|..+++.+|.+.|.......... | +...+.+.+...++...+.|.+|+.| ....|.+...++.+.+-
T Consensus 18 n~~~l~~~l~~~G~~v~~~~~v~--D-d~~~i~~~l~~~~~~~D~VittGG~g--~~~~D~t~~a~~~~~~~ 84 (144)
T PF00994_consen 18 NGPFLAALLEELGIEVIRYGIVP--D-DPDAIKEALRRALDRADLVITTGGTG--PGPDDVTPEALAEAGGR 84 (144)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEE--S-SHHHHHHHHHHHHHTTSEEEEESSSS--SSTTCHHHHHHHHHSSE
T ss_pred HHHHHHHHHHHcCCeeeEEEEEC--C-CHHHHHHHHHhhhccCCEEEEcCCcC--cccCCcccHHHHHhcCc
Confidence 44566677888998765322111 1 12344555667778889999887643 46789999999887763
No 92
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=44.19 E-value=46 Score=30.93 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=37.1
Q ss_pred cEEEEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHc
Q 019877 241 EVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 241 d~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
+..++++|+||=+-++. +. ++.. -.++.+.+.+.|++++|+.|+....+..++.
T Consensus 6 ~~~lI~~DlDGTLL~~~------~~---i~~~----------~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~ 59 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSH------TY---DWQP----------AAPWLTRLREAQVPVILCSSKTAAEMLPLQQ 59 (271)
T ss_pred CCeEEEEeCccCCcCCC------Cc---CcHH----------HHHHHHHHHHcCCeEEEEcCCCHHHHHHHHH
Confidence 45678999999776421 11 1111 1366777889999999999998887765543
No 93
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=44.00 E-value=42 Score=31.68 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCcEEEEcCCChhHHHHHHc---CCCCceEEecCC
Q 019877 284 MTAITLCQENNIPVVVFNLNQPGNIAKAIQ---GERVGTLIGGTW 325 (334)
Q Consensus 284 ~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~---g~~~GT~I~~~~ 325 (334)
++.++.+. ++||.|-+|-.++++.++|. |--+||.|..+.
T Consensus 192 l~~vr~~~--~~PVlvGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G 234 (254)
T PF03437_consen 192 LKRVREAV--PVPVLVGSGVTPENIAEYLSYADGAIVGSYFKKDG 234 (254)
T ss_pred HHHHHhcC--CCCEEEecCCCHHHHHHHHHhCCEEEEeeeeeeCC
Confidence 34444433 38999999999999998875 445799998543
No 94
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=39.17 E-value=1.7e+02 Score=27.62 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCc
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 241 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad 241 (334)
|+..++..|.++|++...++. +.| +...+.+.+..+++.-.+.|++|+ +.-..-|.++-.+|++++-+
T Consensus 22 Na~~la~~L~~~G~~v~~~~~--VgD-~~~~I~~~l~~a~~r~D~vI~tGG--LGPT~DDiT~e~vAka~g~~ 89 (255)
T COG1058 22 NAAFLADELTELGVDLARITT--VGD-NPDRIVEALREASERADVVITTGG--LGPTHDDLTAEAVAKALGRP 89 (255)
T ss_pred hHHHHHHHHHhcCceEEEEEe--cCC-CHHHHHHHHHHHHhCCCEEEECCC--cCCCccHhHHHHHHHHhCCC
Confidence 445566779999999864432 111 122344556677777777787764 33345699999999999965
No 95
>PTZ00174 phosphomannomutase; Provisional
Probab=38.34 E-value=74 Score=29.22 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=33.4
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEC
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhG 137 (334)
+.|.++.=+=|+++.+++ .+++.. .+.|.++++.|+++++.+|
T Consensus 4 ~~klia~DlDGTLL~~~~--~is~~~----~~ai~~l~~~Gi~~viaTG 46 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRN--PITQEM----KDTLAKLKSKGFKIGVVGG 46 (247)
T ss_pred CCeEEEEECcCCCcCCCC--CCCHHH----HHHHHHHHHCCCEEEEEcC
Confidence 467899999999997643 466543 3678888899999999986
No 96
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=37.34 E-value=84 Score=29.40 Aligned_cols=58 Identities=9% Similarity=0.114 Sum_probs=36.7
Q ss_pred EEEEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHh-CCCcEEEEcCCChhHHHHHHc
Q 019877 242 VVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQE-NNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 242 ~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~-~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
.+++++|.||=+... ..+|+... ++.. -.++.+.+.+ .|+.+.|++|+....+.+++.
T Consensus 14 ~~li~~D~DGTLl~~-~~~p~~~~---i~~~----------~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~ 72 (266)
T PRK10187 14 NYAWFFDLDGTLAEI-KPHPDQVV---VPDN----------ILQGLQLLATANDGALALISGRSMVELDALAK 72 (266)
T ss_pred CEEEEEecCCCCCCC-CCCccccc---CCHH----------HHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcC
Confidence 577889999988642 12222222 2211 1234454555 699999999999988877764
No 97
>PRK09181 aspartate kinase; Validated
Probab=36.95 E-value=29 Score=35.70 Aligned_cols=12 Identities=17% Similarity=0.495 Sum_probs=10.7
Q ss_pred eEEEEeCCcccc
Q 019877 92 RVLLKVSGEALA 103 (334)
Q Consensus 92 ~iVIKlGGS~lt 103 (334)
..|.||||+++.
T Consensus 4 ~~V~KFGGtSv~ 15 (475)
T PRK09181 4 HTVEKIGGTSMS 15 (475)
T ss_pred eEEEEECCCcHH
Confidence 689999999984
No 98
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=34.57 E-value=1.1e+02 Score=29.73 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=37.9
Q ss_pred CCCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchH
Q 019877 87 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNI 141 (334)
Q Consensus 87 ~~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~ 141 (334)
....+.||.=+-|++|++++.-.++. ..+.+.|.+|++.|.+++|+++++..
T Consensus 123 ~~~~kvIvFDLDgTLi~~~~~v~ird---PgV~EaL~~LkekGikLaIaTS~~Re 174 (301)
T TIGR01684 123 FEPPHVVVFDLDSTLITDEEPVRIRD---PRIYDSLTELKKRGCILVLWSYGDRD 174 (301)
T ss_pred cccceEEEEecCCCCcCCCCccccCC---HHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 35678999999999999853211221 34457788888999999999976543
No 99
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=33.72 E-value=85 Score=28.80 Aligned_cols=43 Identities=21% Similarity=0.469 Sum_probs=32.5
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg 138 (334)
.|.++.-+=|+++..+ +.+++... +.|.++++.|+++++.+|-
T Consensus 3 ~kli~~DlDGTLl~~~--~~i~~~~~----~ai~~l~~~G~~~~iaTGR 45 (270)
T PRK10513 3 IKLIAIDMDGTLLLPD--HTISPAVK----QAIAAARAKGVNVVLTTGR 45 (270)
T ss_pred eEEEEEecCCcCcCCC--CccCHHHH----HHHHHHHHCCCEEEEecCC
Confidence 4678889999998753 24655444 6788888999999999863
No 100
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=33.68 E-value=1.7e+02 Score=31.67 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHh-CCCcEEEEcCCChhH
Q 019877 229 TAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQE-NNIPVVVFNLNQPGN 307 (334)
Q Consensus 229 ~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~-~Gi~V~I~ng~~~~~ 307 (334)
.....+...-.+++-++++|.||-+...- ..|.... ++. ++ .++...+.+ .|+.|+|++|+....
T Consensus 479 ~~~~~~~~y~~~~~rLi~~D~DGTL~~~~-~~~~~~~---~~~-~~---------~~~L~~L~~d~g~~V~ivSGR~~~~ 544 (726)
T PRK14501 479 AAEEIIARYRAASRRLLLLDYDGTLVPFA-PDPELAV---PDK-EL---------RDLLRRLAADPNTDVAIISGRDRDT 544 (726)
T ss_pred CHHHHHHHHHhccceEEEEecCccccCCC-CCcccCC---CCH-HH---------HHHHHHHHcCCCCeEEEEeCCCHHH
Confidence 34555566667888899999999987521 1111111 111 10 234445555 499999999999999
Q ss_pred HHHHHcCCC------CceEEec
Q 019877 308 IAKAIQGER------VGTLIGG 323 (334)
Q Consensus 308 l~~~l~g~~------~GT~I~~ 323 (334)
+.+.+..-+ -|+.|..
T Consensus 545 l~~~~~~~~l~liaenG~~i~~ 566 (726)
T PRK14501 545 LERWFGDLPIHLVAEHGAWSRA 566 (726)
T ss_pred HHHHhCCCCeEEEEeCCEEEeC
Confidence 988775322 3777653
No 101
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=33.15 E-value=98 Score=28.25 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=32.6
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg 138 (334)
.|.++.=+=|+++.+++ .++++. .+.|.++++.|++++|.+|=
T Consensus 3 ~kli~~DlDGTLl~~~~--~i~~~~----~~ai~~~~~~G~~~~iaTGR 45 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK--TILPES----LEALARAREAGYKVIIVTGR 45 (272)
T ss_pred ccEEEEeCCCceECCCC--ccCHHH----HHHHHHHHHCCCEEEEEcCC
Confidence 46888899999987542 455544 36788889999999999863
No 102
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=33.09 E-value=2.7e+02 Score=24.35 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCc
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 241 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad 241 (334)
|..+++.+|.+.|+........ .| +...+.+.+.++++...+.|++|+ .....-|.+...++.+++-+
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v--~D-d~~~I~~~l~~~~~~~dlVIttGG--~G~t~~D~t~ea~~~~~~~~ 87 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVV--GD-DEDRIAEALRRASERADLVITTGG--LGPTHDDLTREAVAKAFGRP 87 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEe--CC-CHHHHHHHHHHHHhCCCEEEECCC--CCCCCCChHHHHHHHHhCCC
Confidence 3445666788899876532211 11 122344555666777778887754 44567799999999999865
No 103
>PTZ00174 phosphomannomutase; Provisional
Probab=32.98 E-value=90 Score=28.63 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=36.7
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHc
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
++++|.||=+-.+- + +++.. -.++...+.+.|+.+.|+.|+....+.+.+.
T Consensus 7 lia~DlDGTLL~~~------~---~is~~----------~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 7 ILLFDVDGTLTKPR------N---PITQE----------MKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred EEEEECcCCCcCCC------C---CCCHH----------HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 68999999665431 1 23321 1367778889999999999999888877664
No 104
>PLN03017 trehalose-phosphatase
Probab=32.71 E-value=1.5e+02 Score=29.62 Aligned_cols=63 Identities=10% Similarity=0.170 Sum_probs=40.3
Q ss_pred HHHHHHcCCcEEEEeecCCcccc---CCCCCCCCCcccccccHHHHhhCCCCcchH-HHHHHHHhCCCcEEEEcCCChhH
Q 019877 232 ALRCAEINAEVVLKATNVDGVYD---DNPRRNPNARLLDTLTYQEVTSKDLSVMDM-TAITLCQENNIPVVVFNLNQPGN 307 (334)
Q Consensus 232 a~lA~~l~Ad~LiilTDVdGVyt---~dP~~~p~aklI~~Is~~e~~~~g~~v~k~-~Aa~~a~~~Gi~V~I~ng~~~~~ 307 (334)
..++...+..+++++.|.||=+. ++|. .. +++. +. ++.+.+. .++++.|++|+....
T Consensus 101 ~~~~~~~~~k~~llflD~DGTL~Piv~~p~----~a---~i~~-----------~~~~aL~~La-~~~~vaIvSGR~~~~ 161 (366)
T PLN03017 101 EQIMEASRGKQIVMFLDYDGTLSPIVDDPD----KA---FMSS-----------KMRRTVKKLA-KCFPTAIVTGRCIDK 161 (366)
T ss_pred HHHHHHhcCCCeEEEEecCCcCcCCcCCcc----cc---cCCH-----------HHHHHHHHHh-cCCcEEEEeCCCHHH
Confidence 34455556678999999999887 4442 11 1221 12 3333333 678899999999888
Q ss_pred HHHHHc
Q 019877 308 IAKAIQ 313 (334)
Q Consensus 308 l~~~l~ 313 (334)
+.+++.
T Consensus 162 l~~~~~ 167 (366)
T PLN03017 162 VYNFVK 167 (366)
T ss_pred HHHhhc
Confidence 877643
No 105
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=31.29 E-value=1.2e+02 Score=27.67 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=34.7
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHH
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 312 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l 312 (334)
++++|+||=+-.+. + +++.. -.+|...+.+.|+.+.|+.|+.+..+..++
T Consensus 5 li~~DlDGTLl~~~------~---~i~~~----------~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~ 54 (272)
T PRK10530 5 VIALDLDGTLLTPK------K---TILPE----------SLEALARAREAGYKVIIVTGRHHVAIHPFY 54 (272)
T ss_pred EEEEeCCCceECCC------C---ccCHH----------HHHHHHHHHHCCCEEEEEcCCChHHHHHHH
Confidence 57899999766321 1 23321 136777888999999999999887765554
No 106
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=30.52 E-value=1.1e+02 Score=27.15 Aligned_cols=43 Identities=19% Similarity=0.407 Sum_probs=31.4
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg 138 (334)
.|.++.=+-|+++.+++ .+.++. .+.|.++++.|+++++++|-
T Consensus 3 ~kli~~DlDGTLl~~~~--~i~~~~----~~al~~l~~~G~~~~iaTGR 45 (230)
T PRK01158 3 IKAIAIDIDGTITDKDR--RLSLKA----VEAIRKAEKLGIPVILATGN 45 (230)
T ss_pred eeEEEEecCCCcCCCCC--ccCHHH----HHHHHHHHHCCCEEEEEcCC
Confidence 36778889999886532 355443 36678888899999999863
No 107
>PRK03673 hypothetical protein; Provisional
Probab=30.48 E-value=2.6e+02 Score=28.08 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCc
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 241 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad 241 (334)
|...++..|.+.|+....... ..| +...+.+.+...++...+.|++|+ .....-|.+...+|.+++-.
T Consensus 22 N~~~la~~L~~~G~~v~~~~~--v~D-~~~~i~~~l~~a~~~~DlVI~tGG--lGpt~dD~t~~avA~a~g~~ 89 (396)
T PRK03673 22 NAAWLADFFFHQGLPLSRRNT--VGD-NLDALVAILRERSQHADVLIVNGG--LGPTSDDLSALAAATAAGEG 89 (396)
T ss_pred HHHHHHHHHHHCCCEEEEEEE--cCC-CHHHHHHHHHHHhccCCEEEEcCC--CCCCCcccHHHHHHHHcCCC
Confidence 455566678999998653321 111 122344555667778888888875 34466788999999999854
No 108
>PRK01215 competence damage-inducible protein A; Provisional
Probab=30.25 E-value=2.9e+02 Score=26.04 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCc
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 241 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad 241 (334)
|..+++..|.+.|+....... ..| +...+.+.+.++++...+.|++|+ .....-|.+...+|.+++-+
T Consensus 24 n~~~l~~~L~~~G~~v~~~~~--v~D-d~~~I~~~l~~a~~~~DlVIttGG--~g~t~dD~t~eaia~~~g~~ 91 (264)
T PRK01215 24 NASWIARRLTYLGYTVRRITV--VMD-DIEEIVSAFREAIDRADVVVSTGG--LGPTYDDKTNEGFAKALGVE 91 (264)
T ss_pred hHHHHHHHHHHCCCeEEEEEE--eCC-CHHHHHHHHHHHhcCCCEEEEeCC--CcCChhhhHHHHHHHHhCCC
Confidence 444566678889988753321 111 122344556667777788888764 44566788888889888854
No 109
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=30.18 E-value=87 Score=27.81 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCcEEEEcCCChhHHHHHHc---CC------CCceEEec
Q 019877 285 TAITLCQENNIPVVVFNLNQPGNIAKAIQ---GE------RVGTLIGG 323 (334)
Q Consensus 285 ~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~---g~------~~GT~I~~ 323 (334)
++...+.+.|+++.|+.|+.+..+..++. -. ..|+.|..
T Consensus 23 ~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~~~~~I~~NGa~i~~ 70 (221)
T TIGR02463 23 PWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLTGDPYIAENGAAIHL 70 (221)
T ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCCcEEEeCCcEEEc
Confidence 56666788999999999999887765443 12 13887764
No 110
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=30.17 E-value=1.1e+02 Score=28.21 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=31.3
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEC
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhG 137 (334)
|.++.=+-|+++..+ +.+++... +.|.++++.|+++++.+|
T Consensus 3 kli~~DlDGTLl~~~--~~i~~~~~----~ai~~l~~~G~~~~iaTG 43 (272)
T PRK15126 3 RLAAFDMDGTLLMPD--HHLGEKTL----STLARLRERDITLTFATG 43 (272)
T ss_pred cEEEEeCCCcCcCCC--CcCCHHHH----HHHHHHHHCCCEEEEECC
Confidence 577888899998753 24665544 678888899999999986
No 111
>PRK10976 putative hydrolase; Provisional
Probab=30.04 E-value=1.1e+02 Score=28.00 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=31.9
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg 138 (334)
|.++.=+=|+++.++ +.+++... +.|.++++.|++++|.+|=
T Consensus 3 kli~~DlDGTLl~~~--~~is~~~~----~ai~~l~~~G~~~~iaTGR 44 (266)
T PRK10976 3 QVVASDLDGTLLSPD--HTLSPYAK----ETLKLLTARGIHFVFATGR 44 (266)
T ss_pred eEEEEeCCCCCcCCC--CcCCHHHH----HHHHHHHHCCCEEEEEcCC
Confidence 677888899988754 24665443 6788888999999999863
No 112
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=29.67 E-value=87 Score=28.69 Aligned_cols=61 Identities=20% Similarity=0.144 Sum_probs=40.1
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCC--------
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE-------- 315 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~-------- 315 (334)
++++|.||-+..+.+ +.++. -.++...+.+.|+++.|+.|+.+..+.+++..-
T Consensus 1 li~~DlDGTll~~~~-----~~~~~--------------~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~~~~I~ 61 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG-----YDWGP--------------AKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLEDPFIV 61 (256)
T ss_pred CEEEcCCCCCcCCCC-----cCchH--------------HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCcEEE
Confidence 368999998875321 11111 135667778889999999999988876655421
Q ss_pred CCceEEec
Q 019877 316 RVGTLIGG 323 (334)
Q Consensus 316 ~~GT~I~~ 323 (334)
..|+.|..
T Consensus 62 ~NGa~i~~ 69 (256)
T TIGR01486 62 ENGGAIYG 69 (256)
T ss_pred cCCeEEEe
Confidence 13777764
No 113
>PRK10976 putative hydrolase; Provisional
Probab=29.32 E-value=1.1e+02 Score=27.97 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=34.8
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHH
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 312 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l 312 (334)
++++|+||=+-.+ + + +++.. -.++...+.+.|+++.|+.|+....+..++
T Consensus 4 li~~DlDGTLl~~-----~-~---~is~~----------~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~ 53 (266)
T PRK10976 4 VVASDLDGTLLSP-----D-H---TLSPY----------AKETLKLLTARGIHFVFATGRHHVDVGQIR 53 (266)
T ss_pred EEEEeCCCCCcCC-----C-C---cCCHH----------HHHHHHHHHHCCCEEEEEcCCChHHHHHHH
Confidence 5789999966532 1 1 23322 246777888999999999999887766554
No 114
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=29.27 E-value=2.8e+02 Score=22.73 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCc
Q 019877 170 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 241 (334)
Q Consensus 170 ~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad 241 (334)
..++..+|++.|.......... + +...+.+.+.++++...+.|.+|+.+ ...-|.+...++..++.+
T Consensus 20 ~~~l~~~l~~~G~~~~~~~~v~-D--d~~~I~~~l~~~~~~~dliittGG~g--~g~~D~t~~~l~~~~~~~ 86 (135)
T smart00852 20 GPALAELLTELGIEVTRYVIVP-D--DKEAIKEALREALERADLVITTGGTG--PGPDDVTPEAVAEALGKE 86 (135)
T ss_pred HHHHHHHHHHCCCeEEEEEEeC-C--CHHHHHHHHHHHHhCCCEEEEcCCCC--CCCCcCcHHHHHHHhCCc
Confidence 3445666888998765322211 1 12234455556666667777776543 567789898888887744
No 115
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=29.01 E-value=1.1e+02 Score=27.08 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=33.6
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHH
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKA 311 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~ 311 (334)
++++|.||=+-.+ + + +++.. -.++...+.+.|+++.|+.|+.+..+..+
T Consensus 3 ~v~~DlDGTLl~~-----~-~---~i~~~----------~~~~i~~l~~~g~~~~~~TGR~~~~~~~~ 51 (215)
T TIGR01487 3 LVAIDIDGTLTEP-----N-R---MISER----------AIEAIRKAEKKGIPVSLVTGNTVPFARAL 51 (215)
T ss_pred EEEEecCCCcCCC-----C-c---ccCHH----------HHHHHHHHHHCCCEEEEEcCCcchhHHHH
Confidence 5788999977632 1 1 23221 23667777888999999999988776554
No 116
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=28.68 E-value=3.5e+02 Score=22.64 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHc
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEI 238 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l 238 (334)
|..+++..|+++|......... .| +...+.+.+.++++.-.+.|++|+ ...+.-|.+...++...
T Consensus 28 n~~~l~~~l~~~G~~v~~~~~v--~D-d~~~i~~~l~~~~~~~DliIttGG--~g~g~~D~t~~ai~~~g 92 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLGIV--PD-DPEEIREILRKAVDEADVVLTTGG--TGVGPRDVTPEALEELG 92 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEeec--CC-CHHHHHHHHHHHHhCCCEEEECCC--CCCCCCccHHHHHHHhC
Confidence 4455666788899876533211 11 122344445566666788887765 34567799999888865
No 117
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=28.65 E-value=1.6e+02 Score=22.05 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=21.9
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCc
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG 139 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG 139 (334)
+.|+=-||--.++ .+. +...|.++++.--.++|||||-
T Consensus 4 ~rVli~GgR~~~D-------~~~---i~~~Ld~~~~~~~~~~lvhGga 41 (71)
T PF10686_consen 4 MRVLITGGRDWTD-------HEL---IWAALDKVHARHPDMVLVHGGA 41 (71)
T ss_pred CEEEEEECCcccc-------HHH---HHHHHHHHHHhCCCEEEEECCC
Confidence 3444457766654 223 4455555554445788999854
No 118
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=28.36 E-value=2.5e+02 Score=26.27 Aligned_cols=33 Identities=6% Similarity=0.156 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCeEEEEECCch
Q 019877 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGN 140 (334)
Q Consensus 108 ~~l~~~~l~~ia~~Ia~l~-~~G~~vVlVhGgG~ 140 (334)
+.++.+.+..+.+.+..+. +...++||+.|.|.
T Consensus 39 Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~ 72 (277)
T PRK08258 39 NPLTFESYAELRDLFRELVYADDVKAVVLTGAGG 72 (277)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 4578888888888888775 45678999999874
No 119
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=28.26 E-value=1e+02 Score=27.03 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=30.7
Q ss_pred EEEeecCCccccCCC-CCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHc
Q 019877 243 VLKATNVDGVYDDNP-RRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 243 LiilTDVdGVyt~dP-~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
-.+++|+||.++++- ...++...+...+. -+-.+.+.+.+.|+++.|+.++....+..+++
T Consensus 22 kli~~D~Dgtl~~~~i~~~~~~~~~~~~~~----------~d~~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~ 83 (183)
T PRK09484 22 RLLICDVDGVFSDGLIYMGNNGEELKAFNV----------RDGYGIRCLLTSGIEVAIITGRKSKLVEDRMT 83 (183)
T ss_pred eEEEEcCCeeeecCEEEEcCCCCEEEEEec----------cchHHHHHHHHCCCEEEEEeCCCcHHHHHHHH
Confidence 367899999998530 00011122222221 11234444555677766666655554444443
No 120
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=28.15 E-value=99 Score=27.32 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCcEEEEcCCChhHHHHHH
Q 019877 285 TAITLCQENNIPVVVFNLNQPGNIAKAI 312 (334)
Q Consensus 285 ~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l 312 (334)
++.+.+.+.|+++.|+.|+.+..+..++
T Consensus 22 ~al~~l~~~Gi~~~~aTGR~~~~~~~~~ 49 (225)
T TIGR01482 22 EAIRKAESVGIPVVLVTGNSVQFARALA 49 (225)
T ss_pred HHHHHHHHCCCEEEEEcCCchHHHHHHH
Confidence 5566778889999999999887765544
No 121
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=27.95 E-value=90 Score=28.39 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCcEEEEcCCChhHHHHHH
Q 019877 284 MTAITLCQENNIPVVVFNLNQPGNIAKAI 312 (334)
Q Consensus 284 ~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l 312 (334)
.++...+.+.|++++++.|+.+..+..++
T Consensus 21 ~~ai~~l~~~G~~~vi~TgR~~~~~~~~~ 49 (225)
T TIGR02461 21 REALEELKDLGFPIVFVSSKTRAEQEYYR 49 (225)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 35666778889999999998887776654
No 122
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=27.79 E-value=1.3e+02 Score=26.64 Aligned_cols=49 Identities=27% Similarity=0.314 Sum_probs=32.8
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHH
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKA 311 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~ 311 (334)
++++|.||=+-.+. + .++.. -.++...+.+.|+++.|+.|+....+..+
T Consensus 5 li~~DlDGTLl~~~------~---~i~~~----------~~~al~~l~~~G~~~~iaTGR~~~~~~~~ 53 (230)
T PRK01158 5 AIAIDIDGTITDKD------R---RLSLK----------AVEAIRKAEKLGIPVILATGNVLCFARAA 53 (230)
T ss_pred EEEEecCCCcCCCC------C---ccCHH----------HHHHHHHHHHCCCEEEEEcCCchHHHHHH
Confidence 57899999765321 1 12221 13566677788999999999988776554
No 123
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=27.43 E-value=2.6e+02 Score=26.24 Aligned_cols=71 Identities=18% Similarity=0.098 Sum_probs=50.8
Q ss_pred cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcC
Q 019877 223 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL 302 (334)
Q Consensus 223 ~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng 302 (334)
-|+|-|.-....|..+|||.+-+.|. -|-.- .......|+.. -..++..|.+.|+.|.-..|
T Consensus 131 LFidP~~~qi~~A~~~GAd~VELhTG---~yA~a---------~~~~~~~el~~------~~~aa~~a~~lGL~VnAGHg 192 (239)
T PRK05265 131 LFIDPDPEQIEAAAEVGADRIELHTG---PYADA---------KTEAEAAELER------IAKAAKLAASLGLGVNAGHG 192 (239)
T ss_pred EEeCCCHHHHHHHHHhCcCEEEEech---hhhcC---------CCcchHHHHHH------HHHHHHHHHHcCCEEecCCC
Confidence 36788999999999999999999984 44321 01111223211 13678899999999999999
Q ss_pred CChhHHHHH
Q 019877 303 NQPGNIAKA 311 (334)
Q Consensus 303 ~~~~~l~~~ 311 (334)
.+.+++..+
T Consensus 193 Lny~Nv~~i 201 (239)
T PRK05265 193 LNYHNVKPI 201 (239)
T ss_pred CCHHhHHHH
Confidence 888888764
No 124
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=26.99 E-value=46 Score=31.50 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEECC-chHHHH
Q 019877 115 TMAIAREVASVTRLGIEVAIVVGG-GNIFRG 144 (334)
Q Consensus 115 l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g 144 (334)
..+|.+.+..+.+. .++||+.|| |++-+-
T Consensus 47 ~~~I~~~l~~a~~r-~D~vI~tGGLGPT~DD 76 (255)
T COG1058 47 PDRIVEALREASER-ADVVITTGGLGPTHDD 76 (255)
T ss_pred HHHHHHHHHHHHhC-CCEEEECCCcCCCccH
Confidence 45677888888777 899999999 998554
No 125
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=26.49 E-value=1.5e+02 Score=28.88 Aligned_cols=48 Identities=6% Similarity=0.085 Sum_probs=35.0
Q ss_pred CCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC
Q 019877 88 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (334)
Q Consensus 88 ~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg 138 (334)
...+.+|.-+-|+++++++.-.++. ..+.+.|.+|++.|.+++|+++|
T Consensus 126 ~~~~~i~~D~D~TL~~~~~~v~ird---p~V~EtL~eLkekGikLaIvTNg 173 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEEPVRIRD---PFVYDSLDELKERGCVLVLWSYG 173 (303)
T ss_pred eeccEEEEecCCCccCCCCccccCC---hhHHHHHHHHHHCCCEEEEEcCC
Confidence 4667899999999998753211221 33457788888999999999865
No 126
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=26.47 E-value=1.4e+02 Score=27.48 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=35.2
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHc
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
++++|+||=+-.+ + + .|+.. -.+|.+.+.+.|+.+.|+.|+....+..++.
T Consensus 4 li~~DlDGTLl~~-----~-~---~i~~~----------~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~ 54 (272)
T PRK15126 4 LAAFDMDGTLLMP-----D-H---HLGEK----------TLSTLARLRERDITLTFATGRHVLEMQHILG 54 (272)
T ss_pred EEEEeCCCcCcCC-----C-C---cCCHH----------HHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
Confidence 5779999966532 1 1 23322 2367777888999999999998887766543
No 127
>PLN02151 trehalose-phosphatase
Probab=25.79 E-value=1.6e+02 Score=29.14 Aligned_cols=66 Identities=8% Similarity=0.122 Sum_probs=39.3
Q ss_pred HHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHH
Q 019877 233 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 312 (334)
Q Consensus 233 ~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l 312 (334)
.++...++++++++.|.||=+..- -.+|+... ++ .....+...+..+.+|.|++|+..+.+.+++
T Consensus 89 ~~~~~~~~~~~ll~lDyDGTL~PI-v~~P~~A~---~~-----------~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~ 153 (354)
T PLN02151 89 EILHKSEGKQIVMFLDYDGTLSPI-VDDPDRAF---MS-----------KKMRNTVRKLAKCFPTAIVSGRCREKVSSFV 153 (354)
T ss_pred HHHHhhcCCceEEEEecCccCCCC-CCCccccc---CC-----------HHHHHHHHHHhcCCCEEEEECCCHHHHHHHc
Confidence 344456778899999999987620 00111111 11 1222232223356789999999999888876
Q ss_pred c
Q 019877 313 Q 313 (334)
Q Consensus 313 ~ 313 (334)
.
T Consensus 154 ~ 154 (354)
T PLN02151 154 K 154 (354)
T ss_pred C
Confidence 4
No 128
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=25.07 E-value=1.4e+02 Score=27.32 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=34.6
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHH
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 312 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l 312 (334)
++++|.||=+-.+. + +|+.. -.++...+.+.|+.+.|+.|+....+..++
T Consensus 5 li~~DlDGTLl~~~------~---~i~~~----------~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~ 54 (270)
T PRK10513 5 LIAIDMDGTLLLPD------H---TISPA----------VKQAIAAARAKGVNVVLTTGRPYAGVHRYL 54 (270)
T ss_pred EEEEecCCcCcCCC------C---ccCHH----------HHHHHHHHHHCCCEEEEecCCChHHHHHHH
Confidence 57899999665321 1 23321 236777888999999999999887765544
No 129
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=24.83 E-value=1.6e+02 Score=25.78 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCcEEEEcCCChhHHHHHHc
Q 019877 284 MTAITLCQENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 284 ~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
.++...+.+.|+.+.|+.|+.+..+..++.
T Consensus 21 ~~al~~l~~~g~~~~i~TGR~~~~~~~~~~ 50 (254)
T PF08282_consen 21 IEALKELQEKGIKLVIATGRSYSSIKRLLK 50 (254)
T ss_dssp HHHHHHHHHTTCEEEEECSSTHHHHHHHHH
T ss_pred HHHHHhhcccceEEEEEccCcccccccccc
Confidence 366777888999999999999988777665
No 130
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=24.49 E-value=1.9e+02 Score=26.34 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=0.0
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHH
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 312 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l 312 (334)
++++|.||=+-.+.+ +++.... ++.+.+.+.|+.+.|+.|+....+..++
T Consensus 1 li~~DlDGTLl~~~~---------~i~~~~~----------~~i~~l~~~G~~~~iaTGR~~~~~~~~~ 50 (256)
T TIGR00099 1 LIFIDLDGTLLNDDH---------TISPSTK----------EALAKLREKGIKVVLATGRPYKEVKNIL 50 (256)
T ss_pred CEEEeCCCCCCCCCC---------ccCHHHH----------HHHHHHHHCCCeEEEEeCCCHHHHHHHH
No 131
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=24.17 E-value=1.8e+02 Score=25.73 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=29.8
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEC
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhG 137 (334)
|.++.=+=|+++.+++ .+.++. .+.|.++++.|.++++++|
T Consensus 2 k~v~~DlDGTLl~~~~--~i~~~~----~~~i~~l~~~g~~~~~~TG 42 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR--MISERA----IEAIRKAEKKGIPVSLVTG 42 (215)
T ss_pred cEEEEecCCCcCCCCc--ccCHHH----HHHHHHHHHCCCEEEEEcC
Confidence 4677788898886432 344433 4778888899999999986
No 132
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=23.83 E-value=2e+02 Score=27.92 Aligned_cols=12 Identities=17% Similarity=0.493 Sum_probs=10.4
Q ss_pred EEEEeCCccccC
Q 019877 93 VLLKVSGEALAG 104 (334)
Q Consensus 93 iVIKlGGS~lt~ 104 (334)
.|-||||+++.+
T Consensus 2 ~V~K~GGTSms~ 13 (304)
T cd04248 2 TVEKIGGTSMSA 13 (304)
T ss_pred ceeeecCccccc
Confidence 478999999986
No 133
>PRK03670 competence damage-inducible protein A; Provisional
Probab=23.64 E-value=3.5e+02 Score=25.35 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhC-CCEEEEeCCCCCcccChHHHHHHHHHHcCCc
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK-GRVVIFAAGTGNPFFTTDTAAALRCAEINAE 241 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~-G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad 241 (334)
|..+++..|.+.|+....... ..| +...+.+.+..++.. ..+.|++|+ .....-|.+...+|.+++-.
T Consensus 21 N~~~la~~L~~~G~~v~~~~i--V~D-d~~~I~~~l~~a~~~~~DlVIttGG--lGpt~dD~T~eava~a~g~~ 89 (252)
T PRK03670 21 NSAFIAQKLTEKGYWVRRITT--VGD-DVEEIKSVVLEILSRKPEVLVISGG--LGPTHDDVTMLAVAEALGRE 89 (252)
T ss_pred hHHHHHHHHHHCCCEEEEEEE--cCC-CHHHHHHHHHHHhhCCCCEEEECCC--ccCCCCCchHHHHHHHhCCC
Confidence 444566678889988653221 111 122344445556664 478887764 34456688888888888753
No 134
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=22.46 E-value=1.5e+02 Score=27.21 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=10.2
Q ss_pred EEeecCCccccCC
Q 019877 244 LKATNVDGVYDDN 256 (334)
Q Consensus 244 iilTDVdGVyt~d 256 (334)
.++.|+||++-..
T Consensus 3 ~~~~D~DGtl~~~ 15 (249)
T TIGR01457 3 GYLIDLDGTMYKG 15 (249)
T ss_pred EEEEeCCCceEcC
Confidence 4678999999754
No 135
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=22.43 E-value=1.5e+02 Score=29.89 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=35.2
Q ss_pred CCCeEEEEeCCccccCCCC--CCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHH
Q 019877 89 KWQRVLLKVSGEALAGDHT--QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~--~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g 144 (334)
+-.-||+.+|+-+|..+.- .++.. +..++-|+-.++-+..+.+|=|||-+.+.
T Consensus 252 ~P~AiVLQCGaDSL~gDRlgcFnLsi---~Gh~~Cv~fvksfn~pllvlGGGGYT~rN 306 (425)
T KOG1342|consen 252 QPEAIVLQCGADSLAGDRLGCFNLSI---KGHAECVKFVKSFNLPLLVLGGGGYTLRN 306 (425)
T ss_pred CCceEEEEcCCccccCCccceeeecc---hhHHHHHHHHHHcCCcEEEecCCccchhh
Confidence 3456999999999998753 34544 44555555555667777777666766544
No 136
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=22.38 E-value=2.5e+02 Score=23.48 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEc
Q 019877 227 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFN 301 (334)
Q Consensus 227 sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~n 301 (334)
.=..-|..|..++.|..+|+| -||++--.- ..++.++...+. +=-.-++.|.++||+.+++.
T Consensus 21 a~f~~A~~a~smg~dV~iF~t-~dG~~l~~K---~~~ekik~~~~~---------~l~~~~~~a~e~GVk~yvCe 82 (120)
T COG2044 21 APFVMATAAASMGYDVTIFFT-MDGVTLVKK---KVAEKIKHPNFP---------PLEELIKQAIEAGVKIYVCE 82 (120)
T ss_pred hHHHHHHHHHhCCCceEEEEE-eccceeeee---cchhhhcCCCCC---------CHHHHHHHHHHcCCEEEEEc
Confidence 344567789999999888888 466653211 112333332211 11245778899999988886
No 137
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=22.08 E-value=2.1e+02 Score=26.87 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=51.6
Q ss_pred cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcC
Q 019877 223 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL 302 (334)
Q Consensus 223 ~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng 302 (334)
-|+|-|.-....|..+|||.+-+.|. -|-... ..++ . ..|+.. -..++..|.+.|+.|.-..|
T Consensus 128 LFiDP~~~qi~~A~~~GAd~VELhTG---~YA~a~---~~~~----~-~~el~~------i~~aa~~A~~lGL~VnAGHg 190 (237)
T TIGR00559 128 LFIDADKDQISAAAEVGADRIEIHTG---PYANAY---NKKE----M-AEELQR------IVKASVHAHSLGLKVNAGHG 190 (237)
T ss_pred EEeCCCHHHHHHHHHhCcCEEEEech---hhhcCC---Cchh----H-HHHHHH------HHHHHHHHHHcCCEEecCCC
Confidence 36888999999999999999999984 443211 0000 0 112211 13678899999999999999
Q ss_pred CChhHHHHHHc
Q 019877 303 NQPGNIAKAIQ 313 (334)
Q Consensus 303 ~~~~~l~~~l~ 313 (334)
.+.+++..+.+
T Consensus 191 Lny~Nv~~i~~ 201 (237)
T TIGR00559 191 LNYHNVKYFAE 201 (237)
T ss_pred CCHHhHHHHHh
Confidence 88888876654
No 138
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=22.06 E-value=2e+02 Score=26.90 Aligned_cols=74 Identities=19% Similarity=0.101 Sum_probs=51.6
Q ss_pred cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcC
Q 019877 223 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL 302 (334)
Q Consensus 223 ~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng 302 (334)
-|+|-|.-....|..+|||.+-+.|. -|-+-. ..+ +. ..|+.. -..++..|.+.|+.|.-..|
T Consensus 128 LFiDPd~~qi~~A~~~GAd~VELhTG---~Ya~a~---~~~----~~-~~el~~------i~~aa~~a~~~GL~VnAGHg 190 (234)
T cd00003 128 LFIDPDPEQIEAAKEVGADRVELHTG---PYANAY---DKA----ER-EAELER------IAKAAKLARELGLGVNAGHG 190 (234)
T ss_pred EEeCCCHHHHHHHHHhCcCEEEEech---hhhcCC---Cch----hH-HHHHHH------HHHHHHHHHHcCCEEecCCC
Confidence 46899999999999999999999884 443211 000 00 112211 14678899999999999999
Q ss_pred CChhHHHHHHc
Q 019877 303 NQPGNIAKAIQ 313 (334)
Q Consensus 303 ~~~~~l~~~l~ 313 (334)
.+.+++..+.+
T Consensus 191 Lny~Nv~~i~~ 201 (234)
T cd00003 191 LNYENVKPIAK 201 (234)
T ss_pred CCHHHHHHHHh
Confidence 88888876643
No 139
>smart00463 SMR Small MutS-related domain.
Probab=21.96 E-value=1.7e+02 Score=21.73 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhCCC--eEEEEECCch
Q 019877 112 PKITMAIAREVASVTRLGI--EVAIVVGGGN 140 (334)
Q Consensus 112 ~~~l~~ia~~Ia~l~~~G~--~vVlVhGgG~ 140 (334)
.+.+..+-+.|..+.+.+. .+.||||-|.
T Consensus 12 ~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~ 42 (80)
T smart00463 12 EEALTALDKFLNNARLKGLEQKLVIITGKGK 42 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcccC
Confidence 3567777778888888875 6889998764
No 140
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=21.77 E-value=1.1e+02 Score=23.38 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=24.2
Q ss_pred cChHHHHHHHHHHcCCc-EEEEeecCCc
Q 019877 225 FTTDTAAALRCAEINAE-VVLKATNVDG 251 (334)
Q Consensus 225 ~~sD~lAa~lA~~l~Ad-~LiilTDVdG 251 (334)
.+.|.+.+.++.+|..+ .++-|||..|
T Consensus 20 ~s~dev~~~v~~Al~~~~~~l~LtD~kG 47 (74)
T PF11305_consen 20 QSADEVEAAVTDALADGSGVLTLTDEKG 47 (74)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEeCCC
Confidence 47899999999999988 8899999877
No 141
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=21.34 E-value=1.6e+02 Score=26.66 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=16.0
Q ss_pred HHHHHHhCCCeEEEEECCchH
Q 019877 121 EVASVTRLGIEVAIVVGGGNI 141 (334)
Q Consensus 121 ~Ia~l~~~G~~vVlVhGgG~~ 141 (334)
.++.+++.|++++||+||-.+
T Consensus 85 lv~~lk~~G~~v~iiSgg~~~ 105 (212)
T COG0560 85 LVAALKAAGAKVVIISGGFTF 105 (212)
T ss_pred HHHHHHHCCCEEEEEcCChHH
Confidence 356677899999999976443
No 142
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=20.71 E-value=1.2e+02 Score=26.59 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCeEEEEECCchHHHH
Q 019877 118 IAREVASVTRLGIEVAIVVGGGNIFRG 144 (334)
Q Consensus 118 ia~~Ia~l~~~G~~vVlVhGgG~~~~g 144 (334)
+.+.++.|+++|.+-|+|+|||..+..
T Consensus 123 l~~~l~~L~~~g~~~i~v~GG~~l~~~ 149 (200)
T PF01872_consen 123 LEEALRRLKERGGKDILVEGGGSLNGS 149 (200)
T ss_dssp HHHHHHHHHHTTTSEEEEEEHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEechHHHHHH
Confidence 456678888889999999987765433
No 143
>PLN02887 hydrolase family protein
Probab=20.59 E-value=2.4e+02 Score=29.88 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=0.0
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCC------
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERV------ 317 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~------ 317 (334)
++++|+||=+-++ .+.|++-+ .+|.+.+.+.|+.++|+.|+....+.+++..-+.
T Consensus 310 LIa~DLDGTLLn~------d~~Is~~t-------------~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~~~~~~ 370 (580)
T PLN02887 310 YIFCDMDGTLLNS------KSQISETN-------------AKALKEALSRGVKVVIATGKARPAVIDILKMVDLAGKDGI 370 (580)
T ss_pred EEEEeCCCCCCCC------CCccCHHH-------------HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcccccce
Q ss_pred -----------ceEEecCCCCCc
Q 019877 318 -----------GTLIGGTWNSTV 329 (334)
Q Consensus 318 -----------GT~I~~~~~~~~ 329 (334)
|..|.....+.+
T Consensus 371 I~~~~p~I~~NGA~I~d~~g~~I 393 (580)
T PLN02887 371 ISESSPGVFLQGLLVYGRQGREI 393 (580)
T ss_pred EeecccEEeecCeEEEECCCcEE
No 144
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=20.05 E-value=4.9e+02 Score=21.31 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHc
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEI 238 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l 238 (334)
|..++..+|.+.|......... .| +...+.+.+.++++...+.|++|+ .....-|.+...++...
T Consensus 20 n~~~l~~~l~~~G~~v~~~~~v--~D-d~~~i~~~i~~~~~~~DlvittGG--~g~g~~D~t~~ai~~~g 84 (133)
T cd00758 20 NGPALEALLEDLGCEVIYAGVV--PD-DADSIRAALIEASREADLVLTTGG--TGVGRRDVTPEALAELG 84 (133)
T ss_pred hHHHHHHHHHHCCCEEEEeeec--CC-CHHHHHHHHHHHHhcCCEEEECCC--CCCCCCcchHHHHHHhc
Confidence 4455666788889765432111 11 122344556667777788887765 34567788888888765
No 145
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=20.01 E-value=5.2e+02 Score=26.08 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCc
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 241 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad 241 (334)
|...++..|.+.|+........ .| +...+.+.+.++++...+.|++|+ .....-|.+...+|.+++-+
T Consensus 21 N~~~l~~~L~~~G~~v~~~~~v--~D-d~~~i~~~l~~a~~~~DlVIttGG--lgpt~dD~t~eava~~~g~~ 88 (413)
T TIGR00200 21 NAQWLADFLAHQGLPLSRRTTV--GD-NPERLKTIIRIASERADVLIFNGG--LGPTSDDLTAETIATAKGEP 88 (413)
T ss_pred hHHHHHHHHHHCCCeEEEEEEe--CC-CHHHHHHHHHHHhcCCCEEEEcCC--CCCCCcccHHHHHHHHhCCC
Confidence 3444566688899987543221 11 122344555667777788888764 44566788888888887754
Done!