Query 019877
Match_columns 334
No_of_seqs 208 out of 1483
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 08:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ek6_A Uridylate kinase; UMPK 100.0 5.3E-46 1.8E-50 344.1 25.4 234 89-323 8-241 (243)
2 3nwy_A Uridylate kinase; allos 100.0 6.8E-46 2.3E-50 349.8 25.9 235 86-322 46-280 (281)
3 1ybd_A Uridylate kinase; alpha 100.0 4.4E-45 1.5E-49 335.7 27.8 234 89-323 6-239 (239)
4 4a7w_A Uridylate kinase; trans 100.0 6.5E-45 2.2E-49 336.1 26.2 233 89-322 6-240 (240)
5 2a1f_A Uridylate kinase; PYRH, 100.0 6E-45 2E-49 337.1 25.2 234 89-323 7-240 (247)
6 1z9d_A Uridylate kinase, UK, U 100.0 3.1E-44 1.1E-48 333.4 27.2 235 89-324 6-241 (252)
7 2va1_A Uridylate kinase; UMPK, 100.0 2.6E-44 8.7E-49 334.9 25.3 232 89-322 23-255 (256)
8 2jjx_A Uridylate kinase, UMP k 100.0 1.9E-42 6.5E-47 322.0 27.5 238 87-325 9-248 (255)
9 2j4j_A Uridylate kinase; trans 100.0 1.7E-40 5.8E-45 303.1 23.1 214 91-323 1-225 (226)
10 2brx_A Uridylate kinase; UMP k 100.0 2.6E-40 8.9E-45 305.8 20.1 218 88-323 17-244 (244)
11 2ij9_A Uridylate kinase; struc 100.0 5.4E-38 1.8E-42 285.1 22.6 209 91-322 1-219 (219)
12 2j5v_A Glutamate 5-kinase; pro 100.0 7E-37 2.4E-41 298.4 25.8 233 89-325 3-259 (367)
13 3ll9_A Isopentenyl phosphate k 100.0 5.5E-37 1.9E-41 287.6 19.7 228 90-322 2-266 (269)
14 3ll5_A Gamma-glutamyl kinase r 100.0 1.2E-36 4.1E-41 282.2 16.7 224 89-322 2-249 (249)
15 2ako_A Glutamate 5-kinase; str 100.0 1.1E-35 3.8E-40 275.3 21.6 225 90-322 1-251 (251)
16 2ogx_A Molybdenum storage prot 100.0 6.8E-35 2.3E-39 274.3 24.2 216 92-324 41-272 (276)
17 2ap9_A NAG kinase, acetylgluta 100.0 8.9E-35 3.1E-39 276.1 24.5 225 89-324 24-291 (299)
18 2rd5_A Acetylglutamate kinase- 100.0 1.3E-34 4.6E-39 274.9 22.5 224 89-323 35-298 (298)
19 2v5h_A Acetylglutamate kinase; 100.0 2.6E-34 8.8E-39 275.8 21.9 225 89-324 48-311 (321)
20 3k4o_A Isopentenyl phosphate k 100.0 1.8E-34 6E-39 270.2 17.5 220 92-324 8-265 (266)
21 2ogx_B Molybdenum storage prot 100.0 3.7E-33 1.3E-37 261.6 25.2 216 91-323 37-269 (270)
22 3d40_A FOMA protein; fosfomyci 100.0 2.2E-34 7.4E-39 272.1 13.3 229 90-324 23-283 (286)
23 2bty_A Acetylglutamate kinase; 100.0 9.4E-33 3.2E-37 259.9 22.1 221 89-324 20-280 (282)
24 2buf_A Acetylglutamate kinase; 100.0 1.6E-32 5.3E-37 260.9 23.8 223 89-325 25-298 (300)
25 2egx_A Putative acetylglutamat 100.0 7.2E-33 2.5E-37 259.3 21.2 215 92-322 1-269 (269)
26 3ab4_A Aspartokinase; aspartat 100.0 1.6E-32 5.3E-37 272.2 24.6 218 90-324 1-244 (421)
27 3l76_A Aspartokinase; alloster 100.0 1.3E-32 4.3E-37 283.6 22.1 220 90-326 1-247 (600)
28 2we5_A Carbamate kinase 1; arg 100.0 4.2E-32 1.5E-36 259.0 20.7 223 91-322 3-309 (310)
29 1gs5_A Acetylglutamate kinase; 100.0 8.2E-32 2.8E-36 250.3 21.3 218 90-322 2-257 (258)
30 2e9y_A Carbamate kinase; trans 100.0 1.7E-31 5.7E-36 255.6 19.0 228 89-323 3-315 (316)
31 1e19_A Carbamate kinase-like c 100.0 3.6E-31 1.2E-35 253.2 19.7 227 90-323 2-314 (314)
32 3d2m_A Putative acetylglutamat 100.0 6.9E-30 2.4E-34 254.9 21.2 221 89-325 42-305 (456)
33 3l86_A Acetylglutamate kinase; 100.0 8.6E-30 2.9E-34 239.8 18.8 204 91-323 37-278 (279)
34 3zzh_A Acetylglutamate kinase; 100.0 9.5E-30 3.3E-34 242.3 17.5 220 89-326 47-304 (307)
35 4axs_A Carbamate kinase; oxido 100.0 2.9E-29 9.8E-34 241.2 20.0 228 86-322 20-331 (332)
36 2cdq_A Aspartokinase; aspartat 100.0 4.8E-29 1.6E-33 252.2 22.6 221 87-325 23-325 (510)
37 3c1m_A Probable aspartokinase; 100.0 4E-29 1.4E-33 251.1 20.3 217 92-325 2-302 (473)
38 2j0w_A Lysine-sensitive aspart 100.0 6.5E-29 2.2E-33 248.0 20.1 216 90-325 2-293 (449)
39 4ab7_A Protein Arg5,6, mitocho 100.0 1.6E-28 5.5E-33 245.1 18.0 217 90-324 48-302 (464)
40 3tvi_A Aspartokinase; structur 100.0 2.3E-28 7.8E-33 243.7 19.0 211 91-325 3-280 (446)
41 3s6g_A N-acetylglutamate kinas 100.0 3.6E-28 1.2E-32 242.8 19.1 220 89-324 57-311 (460)
42 3kzf_A Carbamate kinase; argin 100.0 2.6E-28 8.8E-33 231.9 16.7 229 89-324 4-317 (317)
43 3s6k_A Acetylglutamate kinase; 99.9 7.1E-28 2.4E-32 240.9 4.9 220 89-324 60-314 (467)
44 3ewi_A N-acylneuraminate cytid 55.3 25 0.00086 29.2 6.4 58 244-313 11-69 (168)
45 3kbq_A Protein TA0487; structu 51.6 48 0.0017 28.0 7.6 68 169-241 24-91 (172)
46 2p9j_A Hypothetical protein AQ 43.4 32 0.0011 27.3 5.0 60 244-313 11-71 (162)
47 3f9r_A Phosphomannomutase; try 41.8 58 0.002 28.4 6.9 51 244-313 6-56 (246)
48 1k1e_A Deoxy-D-mannose-octulos 41.7 24 0.00082 29.0 4.1 60 244-313 10-70 (180)
49 2pr7_A Haloacid dehalogenase/e 36.3 74 0.0025 23.8 6.0 41 91-138 3-43 (137)
50 3pdw_A Uncharacterized hydrola 34.0 66 0.0023 27.6 5.9 59 89-154 5-65 (266)
51 1rkq_A Hypothetical protein YI 31.3 64 0.0022 28.4 5.4 50 244-312 7-56 (282)
52 4fu0_A D-alanine--D-alanine li 30.9 3.1E+02 0.011 25.0 10.9 38 91-135 4-41 (357)
53 2r8e_A 3-deoxy-D-manno-octulos 30.3 58 0.002 26.8 4.7 59 245-313 29-88 (188)
54 1xvi_A MPGP, YEDP, putative ma 29.3 1.1E+02 0.0037 26.8 6.6 52 243-313 10-61 (275)
55 1u02_A Trehalose-6-phosphate p 28.3 67 0.0023 27.6 4.9 47 244-313 3-57 (239)
56 1mkz_A Molybdenum cofactor bio 26.5 1.8E+02 0.006 24.1 7.1 66 169-239 29-96 (172)
57 3nvb_A Uncharacterized protein 26.2 1E+02 0.0035 29.5 6.1 80 227-313 207-291 (387)
58 1nrw_A Hypothetical protein, h 26.1 97 0.0033 27.2 5.7 51 244-313 6-56 (288)
59 3n07_A 3-deoxy-D-manno-octulos 26.0 1.4E+02 0.0047 25.0 6.4 30 285-314 59-88 (195)
60 2b30_A Pvivax hypothetical pro 25.9 1E+02 0.0035 27.6 5.8 50 244-312 29-79 (301)
61 1y5e_A Molybdenum cofactor bio 24.3 2E+02 0.0068 23.6 6.9 66 169-239 32-99 (169)
62 3qgm_A P-nitrophenyl phosphata 23.9 48 0.0016 28.5 3.1 50 244-313 10-62 (268)
63 2obb_A Hypothetical protein; s 23.7 74 0.0025 25.9 4.0 46 90-137 3-48 (142)
64 2fts_A Gephyrin; gephyrin, neu 23.6 2.7E+02 0.0091 26.7 8.6 71 169-245 209-279 (419)
65 3qgm_A P-nitrophenyl phosphata 23.5 70 0.0024 27.4 4.1 43 89-138 7-49 (268)
66 2pjk_A 178AA long hypothetical 23.1 2.2E+02 0.0076 23.7 7.1 66 169-239 41-108 (178)
67 1wr8_A Phosphoglycolate phosph 23.0 1.3E+02 0.0045 25.3 5.7 50 244-312 5-54 (231)
68 3epr_A Hydrolase, haloacid deh 21.4 53 0.0018 28.4 2.9 54 244-317 7-63 (264)
69 3pgv_A Haloacid dehalogenase-l 20.9 1.5E+02 0.0051 25.8 5.8 44 88-137 19-62 (285)
70 3f9r_A Phosphomannomutase; try 20.2 1.3E+02 0.0044 26.1 5.1 43 90-138 4-46 (246)
No 1
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=100.00 E-value=5.3e-46 Score=344.09 Aligned_cols=234 Identities=50% Similarity=0.891 Sum_probs=209.7
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 168 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~~ 168 (334)
+++++|||+||++|++++++.++.+.+++++++|+.+++.|+++|||||||+++++. .+...+++....|+++++++++
T Consensus 8 ~~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~-~~~~~g~~~~~~d~~g~l~t~~ 86 (243)
T 3ek6_A 8 SYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGA-GLAASGMDRVTGDHMGMLATVI 86 (243)
T ss_dssp SCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCST-TTSCSSSCHHHHHHHHHHHHHH
T ss_pred cCcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH-HHHHcCCCCCCHHHHHHHHHHH
Confidence 689999999999999876668999999999999999999999999999999976543 2234467666678889999999
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEeec
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 248 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilTD 248 (334)
|+.++..+|++.|++++.+++++...+.+++..+.+.++|++|.|||++|++|.+++++|++|+++|.+++||+|+++||
T Consensus 87 N~~~l~~al~~~G~~a~~~~~~~~~~v~~~~~~~~~~~lL~~g~IpVv~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lTd 166 (243)
T 3ek6_A 87 NALAMQDALEKLGAKVRVMSAIKINDVCEDFIRRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATK 166 (243)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCBTTTBEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHcCCCeEEechhhcCcccCcCCHHHHHHHHHCCcEEEEECCCCCCcCChHHHHHHHHHHcCCCEEEEEeC
Confidence 99978888999999999999887654444444456788999999999999989999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEec
Q 019877 249 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 323 (334)
Q Consensus 249 VdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~ 323 (334)
|||||++||+.+|++++|+++++.|+.+.+.+++|++|+..|.++|++++|+|+++|+.|.++|+|+.+||+|.+
T Consensus 167 VdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 167 VDGVYDKDPKKHSDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp SSSCBSSCGGGCTTCCBCSEECHHHHHHHTCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred CCccCCCCCCCCCCceecccccHHHHHhCCchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 999999999999999999999999987767788999999999999999999999999999999999999999986
No 2
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.8e-46 Score=349.76 Aligned_cols=235 Identities=52% Similarity=0.874 Sum_probs=206.3
Q ss_pred CCCCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHH
Q 019877 86 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLA 165 (334)
Q Consensus 86 ~~~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la 165 (334)
...++++|||||||++|++++ +.++++++.+++++|++++++|+++|||||||++++++... ..+++....+++++++
T Consensus 46 ~~~~~krIViKlGGs~L~~~~-~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~-~~gl~~~~~d~~g~la 123 (281)
T 3nwy_A 46 QLSGYSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQ-QLGMERTRSDYMGMLG 123 (281)
T ss_dssp -CCCCSEEEEEECGGGGGTTS-SSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTT-TTTCCHHHHHHHHHHH
T ss_pred cCCcCcEEEEEEchhhccCCC-CCCCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHH-hcCCCccchhHHHHHH
Confidence 345789999999999999865 67999999999999999999999999999999998774322 2467766778889999
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEE
Q 019877 166 TVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLK 245 (334)
Q Consensus 166 ~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~Lii 245 (334)
+++|+.+++.+|+++|++++.|++++..++.++|++.++.++|++|.|||+++++|.++++||++|+++|.+++||+|++
T Consensus 124 t~~n~~~l~~~L~~~Gi~a~~~~~~~~~~~~~~~~~~~~l~lL~~g~IpVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~Lii 203 (281)
T 3nwy_A 124 TVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLM 203 (281)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESSCCGGGSEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecccccccccccchHHHHHHHHcCCeEEEECCCCCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 99999888888999999999999998877767787777668999999999999889999999999999999999999999
Q ss_pred eecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 246 ATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 246 lTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
+|||||||++||+.+|++++|+++++.|+.+.+.+++|++|+..|.++|++++|+|+++|+.|.++++|+.+||+|.
T Consensus 204 lTDVdGVy~~dP~~~p~A~~i~~is~~e~~~~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 204 AKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp EESSSSCBCC-----CCCCBCSEECHHHHHTTTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred eeccCccccCCCCcCCCCeEcccccHHHHHHcCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 99999999999999999999999999998777888999999999999999999999999999999999999999995
No 3
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=100.00 E-value=4.4e-45 Score=335.69 Aligned_cols=234 Identities=52% Similarity=0.875 Sum_probs=209.1
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 168 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~~ 168 (334)
+++++||||||++++++++..++.+.+.+++++|+.+++.|+++|||||||++++++. +...+++.++.|+++++++.+
T Consensus 6 ~~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~GgG~~~~g~~-~~~~~~~~~~~~~~~~~~~~~ 84 (239)
T 1ybd_A 6 KYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVS-AQAGSMDRATADYMGMMATVM 84 (239)
T ss_dssp SCSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH-HHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhchh-HHHcCCCCccHHHHHHHHHHH
Confidence 5789999999999997655568899999999999999999999999999999988864 233456666677788899999
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEeec
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 248 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilTD 248 (334)
|..++..+|.++|+++.++++.+..++.+.|++.+..++|+.|.|||++++.|.+++++|++|+++|.+++||+|+||||
T Consensus 85 ~~~l~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~ipVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~liilTd 164 (239)
T 1ybd_A 85 NALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATN 164 (239)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCBSSSCEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHHHHHcCCCeEEEeeecccccccchhHHHHHHHHhCCcEEEEECCccCCCCCcHHHHHHHHHhcCCCEEEEeeC
Confidence 99987778999999999898887655544555555558899999999999888999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEec
Q 019877 249 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 323 (334)
Q Consensus 249 VdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~ 323 (334)
|||||++||+.+|++++|+++++.|+.+++.+.+|++|+.+|.+.|++++|+|+++|+.+.++++|+.+||+|.+
T Consensus 165 VdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~m~~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 165 VDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 239 (239)
T ss_dssp SSSCBSSCGGGCTTCCBCSEEEHHHHHHTTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred CCccCCCCCCCCCCCeEccccCHHHHHHhcccccCHHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence 999999999999999999999999998888888999999999999999999999999999999999999999964
No 4
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=100.00 E-value=6.5e-45 Score=336.13 Aligned_cols=233 Identities=53% Similarity=0.848 Sum_probs=202.5
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCC-CCCChHHHHHHHHHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSG-LDRSSADYIGMLATV 167 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~g-l~~~~~d~~~~la~~ 167 (334)
+++++|||+||+++++++++.++++.+++++++|+.+++.|+++|||||||++++++... ..| ++....+.+++++++
T Consensus 6 ~~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~~~-~~G~~~~~~~~~~~~la~~ 84 (240)
T 4a7w_A 6 KNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAA-QGGIIRRTSGDYMGMLATV 84 (240)
T ss_dssp CCCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC----------CCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhHhHHH-hcCCCCCCCHHHHHHHHHH
Confidence 578999999999999865667999999999999999999999999999999998875422 246 666666788889999
Q ss_pred HHHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEee
Q 019877 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 247 (334)
Q Consensus 168 ~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilT 247 (334)
+|+.+++.+|+++|++++.+++.+.....+++..+.+.++|++|.|||++|+.|.+++++|++|+++|.+++||+|++||
T Consensus 85 ~n~~l~~~~l~~~G~~av~lt~~d~~~~~~~~~~~~i~~lL~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lT 164 (240)
T 4a7w_A 85 INAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKAT 164 (240)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHHTTCEEEEESTTSCTTSCHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEecHHHcCcccCcCcHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHcCCCEEEEcc
Confidence 99999988899999999999988775443333335567899999999999988889999999999999999999999999
Q ss_pred cCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCC-CCceEEe
Q 019877 248 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE-RVGTLIG 322 (334)
Q Consensus 248 DVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~-~~GT~I~ 322 (334)
||||||++||+.+|++++|+++++.|+.+.+.+.+|++|+..|.++|++++|+|+++|+.|.+++.|+ ++||+|.
T Consensus 165 dVdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~m~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i~ 240 (240)
T 4a7w_A 165 KVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK 240 (240)
T ss_dssp SSSSEESSCTTTCTTCCEESEECHHHHHHSSCCSSCHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEEC
T ss_pred CCCceECCCCCCCCCCeEcceecHHHHHhcCccccHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceeeC
Confidence 99999999999999999999999999888788889999999999999999999999999999988776 6899983
No 5
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=100.00 E-value=6e-45 Score=337.08 Aligned_cols=234 Identities=45% Similarity=0.804 Sum_probs=203.9
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 168 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~~ 168 (334)
+++++||||||+++++++++.++.+.+++++++|+.+++.|+++|||||||++++++. +...+++.++.|.++++++.+
T Consensus 7 ~~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~-~~~~g~~~~~~d~~~~~~~~~ 85 (247)
T 2a1f_A 7 IYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAK-LAKAGMNRVVGDHMGMLATVM 85 (247)
T ss_dssp SCSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHH-HHHTTCCHHHHHHHHHHHHHH
T ss_pred cccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchh-HHHcCCCCCcHHHHHHHHHHH
Confidence 5789999999999997555678899999999999999999999999999999987754 334467767778888999999
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEeec
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 248 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilTD 248 (334)
|..++..+|.++|+++.++++.+..++.++|++.++.++|+.|.|||++|+.|.+++++|++|+++|.+++||+|+||||
T Consensus 86 ~~~ll~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~liilTD 165 (247)
T 2a1f_A 86 NGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATK 165 (247)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHHTTCEEEEESTTSCSSCCHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCCeEEecccccccccchhhHHHHHHHHhCCCEEEEeCCcCCCCCCcHHHHHHHHHhCCCCEEEEEeC
Confidence 99977778999999999999887765544566666778999999999999888899999999999999999999999999
Q ss_pred CCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEec
Q 019877 249 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 323 (334)
Q Consensus 249 VdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~ 323 (334)
|||||++||+.+|++++|+++++.|+.+.+.+.+|++|+.+|.+.|++++|+|+++|+.+.++++|+.+||+|..
T Consensus 166 VdGvy~~dP~~~p~a~~i~~i~~~e~~~~g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~ 240 (247)
T 2a1f_A 166 VDGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICE 240 (247)
T ss_dssp SSSCBCC-------CCBCSEECHHHHHHTTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECC
T ss_pred CCcccCCCCCCCCCCeEcccCCHHHHHHcCccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEee
Confidence 999999999999999999999999998888888999999999999999999999999999999999999999975
No 6
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=100.00 E-value=3.1e-44 Score=333.37 Aligned_cols=235 Identities=51% Similarity=0.863 Sum_probs=209.4
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 168 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~~ 168 (334)
+++++||||||+++++++++.++.+.+++++++|+.+++.|+++|||||||++++++. +...+++.++.+.++++++.+
T Consensus 6 ~~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~-~~~lg~~~~~~~~~~~~~~~~ 84 (252)
T 1z9d_A 6 KYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEP-AADAGMDRVQADYTGMLGTVM 84 (252)
T ss_dssp SCSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH-HHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccch-HHHcCCCCCchHHHHHHHHHH
Confidence 4689999999999997555678999999999999999999999999999999987753 233467666677788899999
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEee-
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT- 247 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilT- 247 (334)
|..++..+|.++|+++..+++.+..++.++|++.++.++|+.|.|||++|+.|.+++++|++|+++|.+++||+|+|+|
T Consensus 85 ~~~ll~~al~~~G~~~~~~~~~~~~~~~~~~~~~~~~~lL~~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilT~ 164 (252)
T 1z9d_A 85 NALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKN 164 (252)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSCBTTTBEECCHHHHHHHHHTTCEEEEESTTSCTTCCHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCCeEEEeccccccccCcchHHHHHHHHhCCCEEEEeCCcCCCCCChHHHHHHHHHhcCCCEEEEecC
Confidence 9997777899999999989887765443346666677899999999999988889999999999999999999999999
Q ss_pred cCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 248 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 248 DVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
||||||++||+.+|++++|++|++.|+.+.+...||++|+..|.+.|++++|+|+++|+.|.++|+|+.+||+|.++
T Consensus 165 DVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 241 (252)
T 1z9d_A 165 GVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK 241 (252)
T ss_dssp SCCSCBSSCTTTCTTCCBCSEEEHHHHHTTTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred CCCeeeCCCCCCCCCCeEeeEecHHHHHhccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecC
Confidence 99999999999999999999999999887777788999999999999999999999999999999999999999864
No 7
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=100.00 E-value=2.6e-44 Score=334.88 Aligned_cols=232 Identities=37% Similarity=0.650 Sum_probs=200.8
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 168 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~~ 168 (334)
+++++||||||++++++++..++.+.+++++++|+.++ .|+++|||||||++++++. +...+++..+.+.++++++.+
T Consensus 23 ~~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~-~g~~vVlVhGgG~~~~~~~-~~~~g~~~~~~~~~~~l~~~~ 100 (256)
T 2va1_A 23 RKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKIS-KKYIVSIVLGGGNIWRGSI-AKELDMDRNLADNMGMMATII 100 (256)
T ss_dssp CCSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHT-TTSEEEEEECCTTTCCHHH-HHHTTCCHHHHHHHHHHHHHH
T ss_pred hcCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEECCcHHhccch-HHHcCCCCCchhHHHHHHHHH
Confidence 57899999999999986556788999999999999999 8999999999999988864 334567666677788999999
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEeec
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 248 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilTD 248 (334)
|..++..+|.++|+++..+++++..++.++|++.++.++|+.|.|||++|++|++++++|++|+++|.+++||+|+|+||
T Consensus 101 n~~l~~~~l~~~Gi~a~~~~~~t~~~~~~~~~~~~~~~lL~~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilTD 180 (256)
T 2va1_A 101 NGLALENALNHLNVNTIVLSAIKCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKN 180 (256)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSCCTTTCEECCHHHHHHHHHTTCEEEEESTTSSSSCCHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCCeEEEeeeecccccchhhHHHHHHHHhCCcEEEEECCCCCCCCChhHHHHHHHHhCCCCEEEEeec
Confidence 99997778999999999899888766656677766678999999999999888999999999999999999999999999
Q ss_pred -CCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 249 -VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 249 -VdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
|||||++||+.+|++++|++|++.|+.+++...||++|+..|.+.|++++|+|+++|+.+.++|+|+.+||+|.
T Consensus 181 ~VdGVy~~dP~~~p~a~~i~~is~~e~~~~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 181 GVDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp SCCSBCSCC--------CBSEEEHHHHHHHTCCSSCHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred ccCeEEcCCCCCCCCCEEccEEcHHHHHHhccCCccHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 99999999999999999999999998776666779999999999999999999999999999999999999996
No 8
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=100.00 E-value=1.9e-42 Score=321.97 Aligned_cols=238 Identities=43% Similarity=0.733 Sum_probs=207.6
Q ss_pred CCCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHH
Q 019877 87 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLAT 166 (334)
Q Consensus 87 ~~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~ 166 (334)
..+.+++||||||+++++++++.++.+.+++++++|+.+++.|+++|||||||++++++. +...+++....+.++++++
T Consensus 9 ~~~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~~~~~~-~~~~g~~~~~~~~~~~~~~ 87 (255)
T 2jjx_A 9 MRPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHL-AEEWGIDRVEADNIGTLGT 87 (255)
T ss_dssp -CBCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH-HHHTTCCHHHHHHHHHHHH
T ss_pred cccCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHHHhhhH-HHHcCCCCCChHHHhHHHH
Confidence 457899999999999998655678999999999999999999999999999999987754 3334565555566788999
Q ss_pred HHHHHHHHHHHHH-cCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEE
Q 019877 167 VMNAIFLQATMES-IGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLK 245 (334)
Q Consensus 167 ~~n~~Lv~~~L~~-~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~Lii 245 (334)
.+|+.|+..+|.+ +|+++.++++.+...+.+++....+.++|+.|.|||++|..|.+++++|++|+++|.+|+||+|+|
T Consensus 88 ~~~~~ll~~~l~~~~Gi~a~~l~~~~~~~v~~~~~~~~~~~lL~~g~IpVi~gg~g~~~vttD~~Aa~lA~~l~Ad~lii 167 (255)
T 2jjx_A 88 IINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILV 167 (255)
T ss_dssp HHHHHHHHHHHHHHCSSCEEEEESSCCCSSSEECCHHHHHHHHHTTCEEEEESTTSCSSCCSHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHhhcCCceEEecHHHcCcccCcccHHHHHHHHhCCcEEEEeCCCCCCccchHHHHHHHHHhcCCCEEEE
Confidence 9999988888999 999999888877653433444445568999999999998667888999999999999999999999
Q ss_pred ee-cCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 246 AT-NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 246 lT-DVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
|| ||||||++||+.+|++++|++|+++|+.+.|.+++++.|++.+.+.|++++|+|+++|+.+.++|+|+.+||+|.++
T Consensus 168 lT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~G~~~m~~~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 168 AKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 (255)
T ss_dssp EESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHTTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred EeCCcCeeECCCCCCCCCCeEeeEecHHHHHHcCCccCHHHHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecC
Confidence 99 99999999999999999999999999988888889999999999999999999999999999999999999999874
Q ss_pred C
Q 019877 325 W 325 (334)
Q Consensus 325 ~ 325 (334)
.
T Consensus 248 ~ 248 (255)
T 2jjx_A 248 A 248 (255)
T ss_dssp C
T ss_pred c
Confidence 3
No 9
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=100.00 E-value=1.7e-40 Score=303.09 Aligned_cols=214 Identities=25% Similarity=0.420 Sum_probs=186.4
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccCCCCCChHHHHHHHHHHHH
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMN 169 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~gl~~~~~d~~~~la~~~n 169 (334)
+++||||||++++++ +.+.+++++++|+.+++.|+++|||||||++++++ ..+...+++....++++++++.+|
T Consensus 1 ~~iViK~GGs~l~~~-----~~~~~~~~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 75 (226)
T 2j4j_A 1 MNIILKISGKFFDED-----NVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLN 75 (226)
T ss_dssp CEEEEEECTHHHHTC-----CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEeccccccCC-----CHHHHHHHHHHHHHHHhCCCeEEEEECcchHhchhHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 479999999999853 47789999999999998999999999999998885 234455677667788899999999
Q ss_pred HHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEeecC
Q 019877 170 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 249 (334)
Q Consensus 170 ~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilTDV 249 (334)
+.|++.+|.++|+++ + .. -.+.+.++|+.|.|||++| |.+++++|++|+++|.+|+||+|+|||||
T Consensus 76 ~~l~~~~l~~~g~~~------~--~~----~~~~i~~ll~~g~ipVi~g--g~~~~~~D~~Aa~lA~~l~Ad~liilTdV 141 (226)
T 2j4j_A 76 AYLVMFSLQDLAYMH------V--PQ----SLEEFIQDWSHGKVVVTGG--FQPGQSTAAVAALVAEASSSKTLVVATNV 141 (226)
T ss_dssp HHHHHHHHTTSBCSC------C--CS----SHHHHHHHHTTSSBEEECC--CSTTSCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHHhCCCC------C--cC----CHHHHHHHHHCCCEEEEcC--CCCCCCcHHHHHHHHHhcCCCEEEEeecc
Confidence 999987799999865 1 11 1234678899999999998 68899999999999999999999999999
Q ss_pred CccccCCCCCCCCCcccccccHHHHhhC----C----CC--cchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCce
Q 019877 250 DGVYDDNPRRNPNARLLDTLTYQEVTSK----D----LS--VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGT 319 (334)
Q Consensus 250 dGVyt~dP~~~p~aklI~~Is~~e~~~~----g----~~--v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT 319 (334)
||||++||+.+|++++|+++++.|+.++ + .| ++|++|+..|.+.|++++|+|+++|+.+.++++|+.+||
T Consensus 142 dGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT 221 (226)
T 2j4j_A 142 DGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSS 221 (226)
T ss_dssp SSCBSSCTTTSSSCCBCSEEEHHHHHHHHC----------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCE
T ss_pred ceeeCCCCCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCce
Confidence 9999999999999999999999988664 2 34 899999999999999999999999999999999999999
Q ss_pred EEec
Q 019877 320 LIGG 323 (334)
Q Consensus 320 ~I~~ 323 (334)
+|.+
T Consensus 222 ~i~~ 225 (226)
T 2j4j_A 222 IIEP 225 (226)
T ss_dssp EEEC
T ss_pred EEee
Confidence 9975
No 10
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=100.00 E-value=2.6e-40 Score=305.79 Aligned_cols=218 Identities=26% Similarity=0.394 Sum_probs=187.7
Q ss_pred CCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccCCCCCChHHHHHHHHH
Q 019877 88 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLAT 166 (334)
Q Consensus 88 ~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~gl~~~~~d~~~~la~ 166 (334)
.+++++||||||+++++++ ++.+.+++++++|+.+++ |+++|||||||++++++ ..+...+++....+.++++++
T Consensus 17 ~~~k~iViKlGGs~l~~~~---~~~~~i~~~~~~i~~l~~-g~~vViV~GgG~~~~~~~~~~~~~gl~~~~~~~~~~~~~ 92 (244)
T 2brx_A 17 GSHMRIVFDIGGSVLVPEN---PDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQIT 92 (244)
T ss_dssp --CCEEEEEECHHHHCSSS---CCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred hcccEEEEEechhhcCCCC---CCHHHHHHHHHHHHHHhC-CCeEEEEECccHHHhchHHHHHHcCCCcccHHHHHHHHH
Confidence 4578999999999999652 788999999999999999 99999999999998874 234456777777788899999
Q ss_pred HHHHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEe
Q 019877 167 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKA 246 (334)
Q Consensus 167 ~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~Liil 246 (334)
.+|+.|++.+|.++|++.. .. -.+.+.++|+.|.|||++| |.+++++|++|+++|.+++||+|+|+
T Consensus 93 ~~~~~l~~~~l~~~g~~~~--------~~----~~~~i~~lL~~g~IpVi~g--g~~~~~~D~~Aa~lA~~l~Ad~liil 158 (244)
T 2brx_A 93 RANAMLLIAALREKAYPVV--------VE----DFWEAWKAVQLKKIPVMGG--THPGHTTDAVAALLAEFLKADLLVVI 158 (244)
T ss_dssp HHHHHHHHHHHGGGBCSSC--------BC----SHHHHHHHHHTTCBCEECC--CSTTCCHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCC--------cC----CHHHHHHHHhCCCEEEEcC--CCCCCCchHHHHHHHHHcCCCEEEEE
Confidence 9999999877999998651 01 1234578999999999998 78899999999999999999999999
Q ss_pred ecCCccccCCCCCCCCCcccccccHHHHhhC----CC-----CcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCC
Q 019877 247 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----DL-----SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERV 317 (334)
Q Consensus 247 TDVdGVyt~dP~~~p~aklI~~Is~~e~~~~----g~-----~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~ 317 (334)
|||||||++||+.+|++++|++|++.|+.++ +. +.+++.|++.+.+.+++++|+|+++|+.|.++++|+.+
T Consensus 159 TDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~ 238 (244)
T 2brx_A 159 TNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHN 238 (244)
T ss_dssp CSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSS
T ss_pred eCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCC
Confidence 9999999999999999999999999988654 33 56688889999999999999999999999999999999
Q ss_pred ceEEec
Q 019877 318 GTLIGG 323 (334)
Q Consensus 318 GT~I~~ 323 (334)
||+|.+
T Consensus 239 GT~i~~ 244 (244)
T 2brx_A 239 GTTIEP 244 (244)
T ss_dssp SEEECC
T ss_pred ceEecC
Confidence 999964
No 11
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=100.00 E-value=5.4e-38 Score=285.07 Aligned_cols=209 Identities=33% Similarity=0.467 Sum_probs=177.3
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccCCCCCChHHHHHHHHHHHH
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMN 169 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~gl~~~~~d~~~~la~~~n 169 (334)
+++||||||++++++ .+.+++++++|+.+++ |+++|||||||+++++. ..+...++++...++++++++.+|
T Consensus 1 ~~iViK~GGs~l~~~------~~~~~~~~~~i~~l~~-g~~vvlV~ggG~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ 73 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNE------SEKIREFAKTIESVAQ-QNQVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLN 73 (219)
T ss_dssp CEEEEEECSSTTTTC------HHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEeChhhhCCh------HHHHHHHHHHHHHHcC-CCEEEEEECcchHhcchHHHHHHcCCCccchHHHHHHHHHHH
Confidence 479999999999863 5689999999999998 99999999999998884 234455777777788899999999
Q ss_pred HHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEEeecC
Q 019877 170 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 249 (334)
Q Consensus 170 ~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~LiilTDV 249 (334)
+.|++.+|+.. +.. . +.-.+.+.++|+.|.|||++| |.+++++|++|+++|.+++||+|+|+|||
T Consensus 74 ~~l~~~~~~~~-~~~--------~----~~~~~~i~~ll~~g~ipVi~~--g~~~~~~D~~Aa~lA~~l~Ad~li~lTdV 138 (219)
T 2ij9_A 74 AMLLISAIPSA-AKK--------V----PVDFMEAEELSKLYRVVVMGG--TFPGHTTDATAALLAEFIKADVFINATNV 138 (219)
T ss_dssp HHHHHHHCTTB-CSS--------C----CSSHHHHHHHHTTCSEEEECC--CSSSSCTHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHHh-cCC--------C----cCCHHHHHHHHHCCCEEEEeC--CCCCCCchHHHHHHHHHcCCCeEEEeeCC
Confidence 99998755433 211 0 111234678999999999999 78899999999999999999999999999
Q ss_pred CccccCCCCCCCCCcccccccHHHHhhC----CC-----CcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceE
Q 019877 250 DGVYDDNPRRNPNARLLDTLTYQEVTSK----DL-----SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 320 (334)
Q Consensus 250 dGVyt~dP~~~p~aklI~~Is~~e~~~~----g~-----~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~ 320 (334)
||||++||+.+|++++|+++++.|+.++ +. +..|+.|++.+.+.+++++|+|+ +|+.+.++++|+.+||+
T Consensus 139 dGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~ 217 (219)
T 2ij9_A 139 DGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTV 217 (219)
T ss_dssp SSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEE
T ss_pred CceecCCCCCCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeE
Confidence 9999999999999999999999998664 33 56788999999999999999999 99999999999999999
Q ss_pred Ee
Q 019877 321 IG 322 (334)
Q Consensus 321 I~ 322 (334)
|.
T Consensus 218 i~ 219 (219)
T 2ij9_A 218 IA 219 (219)
T ss_dssp EC
T ss_pred eC
Confidence 84
No 12
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=100.00 E-value=7e-37 Score=298.42 Aligned_cols=233 Identities=20% Similarity=0.290 Sum_probs=162.6
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 168 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~~ 168 (334)
+++++||||||++|++++ +.++.+.+.+++++|+.+++.|+++||||||| ...++..++... .+...+..+++++.+
T Consensus 3 ~~k~iVIKiGGs~l~~~~-~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGg-i~~g~~~lg~~~-~~~~l~~~qa~aavG 79 (367)
T 2j5v_A 3 DSQTLVVKLGTSVLTGGS-RRLNRAHIVELVRQCAQLHAAGHRIVIVTSGA-IAAGREHLGYPE-LPATIASKQLLAAVG 79 (367)
T ss_dssp CCCEEEEEECHHHHTTTS-SSCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHHHHHHTSCC-CCSSHHHHHHHHHHH
T ss_pred CCCEEEEEECcHHhcCCC-CCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCH-HHHHHHHcCCCC-CCCCHHHHHHHHHHH
Confidence 568999999999999854 56899999999999999999999999999877 434555554321 123445667776666
Q ss_pred HHHH---HHHHHHHcCCCeeEEeceeccccc--hhHHHH--HHHHHHhCCCEEEEeCC-----CCCcccChHHHHHHHHH
Q 019877 169 NAIF---LQATMESIGIPTRVQTAFRMSEVA--EPYIRR--RAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCA 236 (334)
Q Consensus 169 n~~L---v~~~L~~~Gi~a~~l~~~~~~~~~--~~~i~~--~i~~lL~~G~IPVi~g~-----~g~~~~~sD~lAa~lA~ 236 (334)
|..+ +..+|.++|+++. +...+..++. .+|++. .+.++|+.|.|||++++ ++..++|||++|+++|.
T Consensus 80 q~~l~~~~~~~l~~~G~~~~-qvllt~~d~~~~~r~~n~~~~i~~LL~~g~IPIv~end~v~~~el~~gd~D~lAa~vA~ 158 (367)
T 2j5v_A 80 QSRLIQLWEQLFSIYGIHVG-QMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAI 158 (367)
T ss_dssp HHHHHHHHHHHHHTTTCCEE-EEEECGGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCCGGGCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCceE-EEEEecccccCceEEEhHHHHHHHHHHCCCEEEECCCCceecccccCCCHHHHHHHHHH
Confidence 6544 4456899999986 3333333332 245553 46789999999999853 34678999999999999
Q ss_pred HcCCcEEEEeecCCccccCCCCCCCCCcccccccH--HHHhhC----------CCCcchHHHHHHHHhCCCcEEEEcCCC
Q 019877 237 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTSK----------DLSVMDMTAITLCQENNIPVVVFNLNQ 304 (334)
Q Consensus 237 ~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~--~e~~~~----------g~~v~k~~Aa~~a~~~Gi~V~I~ng~~ 304 (334)
+++||+|+|+|||||||++||+.+|++++|+++++ +|+.++ |.|.+|++|+..|.++|++++|+|+++
T Consensus 159 ~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~ 238 (367)
T 2j5v_A 159 LAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSK 238 (367)
T ss_dssp HHTCSEEEEEECC------------------------------------------CHHHHHHHHHHHHTTCEEEEEETTS
T ss_pred hcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 99999999999999999999999999999999999 777543 236779999999999999999999999
Q ss_pred hhHHHHHHcCCCCceEEecCC
Q 019877 305 PGNIAKAIQGERVGTLIGGTW 325 (334)
Q Consensus 305 ~~~l~~~l~g~~~GT~I~~~~ 325 (334)
|+.|.++++|+.+||+|.+..
T Consensus 239 ~~~L~~~l~g~~~GT~i~~~~ 259 (367)
T 2j5v_A 239 PGVIGDVMEGISVGTLFHAQA 259 (367)
T ss_dssp TTHHHHHHHTCCCSEEECCCS
T ss_pred chHHHHHhcCCCCcEEEEcCc
Confidence 999999999999999998744
No 13
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=5.5e-37 Score=287.55 Aligned_cols=228 Identities=25% Similarity=0.326 Sum_probs=176.9
Q ss_pred CCeEEEEeCCccccCCC-CCC-CCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCCh-------HHH
Q 019877 90 WQRVLLKVSGEALAGDH-TQN-IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS-------ADY 160 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~-~~~-l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~-------~d~ 160 (334)
.|++|||+||++|++++ ... ++++.+.+++++|+.++ +.++|||||||++++. ++++.++.... .++
T Consensus 2 ~k~iVIKlGG~~l~~~~~~~~~~~~~~l~~l~~~i~~l~--~~~~vlVhGGG~~~~~--~~~~~gi~~~~~~~~g~~~~~ 77 (269)
T 3ll9_A 2 SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNAS--PSSLMIVHGAGSFGHP--FAGEYRIGSEIENEEDLRRRR 77 (269)
T ss_dssp -CCEEEEECHHHHEECCSSSCEECHHHHHHHHHHHHHHC--CSSEEEEECCGGGTHH--HHHHHTTTSCCCSHHHHHHHH
T ss_pred CCEEEEEEChhheecCccccccccHHHHHHHHHHHHHhc--CCCEEEEECCcHHHHH--HHHHcCCCcccccCccccccc
Confidence 47899999999999864 455 89999999999999886 5899999999999654 33333443211 123
Q ss_pred HHHHHH-----HHHHHHHHHHHHHcCCCeeEEeceecccc--ch-hHHH-HHHHHHHhCCCEEEEeCC-----C--C-Cc
Q 019877 161 IGMLAT-----VMNAIFLQATMESIGIPTRVQTAFRMSEV--AE-PYIR-RRAVRHLEKGRVVIFAAG-----T--G-NP 223 (334)
Q Consensus 161 ~~~la~-----~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~--~~-~~i~-~~i~~lL~~G~IPVi~g~-----~--g-~~ 223 (334)
.++..+ .+|..+++ +|+++|++++.+++.+.... ++ .+++ +.+..+|++|+|||++|+ . + ..
T Consensus 78 ~G~rvT~~~~~~ln~~l~~-~L~~~G~~a~~l~g~~~~~~~~g~v~~v~~~~i~~lL~~g~ipVi~~~~~~~~~~~g~~~ 156 (269)
T 3ll9_A 78 FGFALTQNWVKKLNSHVCD-ALLAEGIPAVSMQPSAFIRAHAGRISHADISLIRSYLEEGMVPVVYGDVVLDSDRRLKFS 156 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHTTCCEEECCGGGTEEEETTEEEEECCHHHHHHHHTTCEEEEECEEEEBSCTTTSEE
T ss_pred chhhHHHHHHHHHHHHHHH-HHHHCCCcEEEEcchHcCeEecCeeeeecHHHHHHHHHCCCEEEECCCEEecccccCcce
Confidence 344333 37877655 59999999998887764221 11 1233 446789999999999982 2 2 45
Q ss_pred ccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC----------CCCcchHHHHHHHHhC
Q 019877 224 FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----------DLSVMDMTAITLCQEN 293 (334)
Q Consensus 224 ~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~----------g~~v~k~~Aa~~a~~~ 293 (334)
++++|++|+++|.+|+||+|+++|||||||++||+.+|++++|+++++.|+.++ |.|.+|++||..+.++
T Consensus 157 ~~~~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a~~~ 236 (269)
T 3ll9_A 157 VISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAEK 236 (269)
T ss_dssp EECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHHHHT
T ss_pred ecchHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999999999999999887532 3478899999999999
Q ss_pred CCcEEEEcCCChhHHHHHHcCCCC-ceEEe
Q 019877 294 NIPVVVFNLNQPGNIAKAIQGERV-GTLIG 322 (334)
Q Consensus 294 Gi~V~I~ng~~~~~l~~~l~g~~~-GT~I~ 322 (334)
|++++|+|+++|+.+.++|+|+.+ ||+|.
T Consensus 237 Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 237 GVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp TCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred CCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 999999999999999999999999 99997
No 14
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=100.00 E-value=1.2e-36 Score=282.18 Aligned_cols=224 Identities=20% Similarity=0.270 Sum_probs=175.8
Q ss_pred CCCeEEEEeCCccccCCC-CCCCCHHHHHHHHHHHHHHHhCCCeEE-EEECCchHHHHHHHcccCCCCCCh--HHHHHHH
Q 019877 89 KWQRVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGIEVA-IVVGGGNIFRGASAAGNSGLDRSS--ADYIGML 164 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~-~~~l~~~~l~~ia~~Ia~l~~~G~~vV-lVhGgG~~~~g~~~~~~~gl~~~~--~d~~~~l 164 (334)
++|++|||+||+++++++ ++.++.+.+++++++|+. |+++| ||||||++++. .+...+++... .|..++.
T Consensus 2 ~~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~----G~~vv~lVhGGG~~~~~--~~~~~gi~~~~~~~d~~gl~ 75 (249)
T 3ll5_A 2 PFTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSFGHI--KAMEFGLPGPKNPRSSIGYS 75 (249)
T ss_dssp --CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT----CTTEEEEEECCGGGTHH--HHHHHTCSEECCHHHHHHHH
T ss_pred CceEEEEEECccEEecCcccccchHHHHHHHHHHHhc----CCceEEEEECccHHHHH--HHHHhCCCcCCCccccccHH
Confidence 478999999999999853 567999999999999985 89999 99999999765 23333454332 3333332
Q ss_pred -----HHHHHHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCC-----C-CCcccChHHHHHH
Q 019877 165 -----ATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG-----T-GNPFFTTDTAAAL 233 (334)
Q Consensus 165 -----a~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~-----~-g~~~~~sD~lAa~ 233 (334)
...+|..+++ +|.++|++++.+++.+....++. ..+.+..+|++|.|||++|+ . +..++++|++|++
T Consensus 76 ~t~~~~~~ln~~~v~-~l~~~G~~a~~l~~~~~~~~g~v-~~~~i~~ll~~g~ipVi~~~~~~~~~~~~~~~~~D~~Aa~ 153 (249)
T 3ll5_A 76 IVHRDMENLDLMVID-AMIEMGMRPISVPISALRYDGRF-DYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMAD 153 (249)
T ss_dssp HHHHHHHHHHHHHHH-HHHHTTCCEEECCGGGSCBSSSB-CCHHHHHHHHTTCEEEEECEEEEEETTEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHCCCcEEEEcHHHcccccEE-cHHHHHHHHHCCCEEEECCCEEEcCCCceeeecHHHHHHH
Confidence 2377888874 59999999998888776444433 12446789999999999973 1 2347899999999
Q ss_pred HHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CCCcchHHHHHHH-HhCCCcEEEEcCCCh
Q 019877 234 RCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLC-QENNIPVVVFNLNQP 305 (334)
Q Consensus 234 lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~~v~k~~Aa~~a-~~~Gi~V~I~ng~~~ 305 (334)
+|.+++||+|+|+|||||||++||+.+|++++++++.. ++... |.|.+|++||..+ .++|++++|+|+++|
T Consensus 154 lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~~-~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~ 232 (249)
T 3ll5_A 154 MAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDT-NITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHP 232 (249)
T ss_dssp HHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEECC-CC-------------HHHHHHHHHHHTTCTTCEEEEETTSG
T ss_pred HHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHHH-HHhcccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCCh
Confidence 99999999999999999999999999999999999952 22111 4578899999998 899999999999999
Q ss_pred hHHHHHHcCCCC-ceEEe
Q 019877 306 GNIAKAIQGERV-GTLIG 322 (334)
Q Consensus 306 ~~l~~~l~g~~~-GT~I~ 322 (334)
+.+.+ |.|+.+ ||+|.
T Consensus 233 ~~l~~-l~g~~~~GT~i~ 249 (249)
T 3ll5_A 233 ERIGD-IGKESFIGTVIR 249 (249)
T ss_dssp GGGGG-TTSTTCCSEEEC
T ss_pred hHHHH-hCCCCCCCEEeC
Confidence 99988 999988 99983
No 15
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=100.00 E-value=1.1e-35 Score=275.26 Aligned_cols=225 Identities=15% Similarity=0.156 Sum_probs=176.7
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcccCCCCCChHHHHHHHHHHHH
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMN 169 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la~~~n 169 (334)
+|++||||||++++ ++ ++++.+.+++++++|+.+++. +++|||||||.. .+...++... .+..+ .+++++..|
T Consensus 1 ~k~iViKlGGs~l~-~~-~~~~~~~~~~~~~~i~~l~~~-~~vVlVhgGg~~-~~~~~~g~~~--~~~~~-~~~l~~~~q 73 (251)
T 2ako_A 1 MKRIVVKVGSHVIS-EE-NTLSFERLKNLVAFLAKLMEK-YEVILVTSAAIS-AGHTKLDIDR--KNLIN-KQVLAAIGQ 73 (251)
T ss_dssp -CEEEEEECHHHHB-CS-SSBCHHHHHHHHHHHHHHHHH-SEEEEEECCHHH-HHHHHCCCCS--SSHHH-HHHHHHHHH
T ss_pred CCEEEEEeCcceeC-CC-CCCCHHHHHHHHHHHHHHHhC-CCEEEEECCHHH-HHHHHhCCcc--CCchH-HHHHHHHHH
Confidence 37899999999999 53 367899999999999999888 999999988844 3445554322 23334 356666666
Q ss_pred HHH---HHHHHHHcCCCeeEEeceeccccc--hhHHHH--HHHHHHhCCCEEEEeCCC-----CCcccChHHHHHHHHHH
Q 019877 170 AIF---LQATMESIGIPTRVQTAFRMSEVA--EPYIRR--RAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAE 237 (334)
Q Consensus 170 ~~L---v~~~L~~~Gi~a~~l~~~~~~~~~--~~~i~~--~i~~lL~~G~IPVi~g~~-----g~~~~~sD~lAa~lA~~ 237 (334)
..+ +..+|.++|+++..+.. +..++. .++++. .+..+|+.|.|||+++++ +..++++|++|+++|.+
T Consensus 74 ~~l~~~~~~~l~~~G~~~~~i~~-~~~~~~~~~~~~~~~~~i~~ll~~g~ipVi~~~d~v~~~~~~~~~~D~~Aa~lA~~ 152 (251)
T 2ako_A 74 PFLISVYNELLAKFNKLGGQILL-TGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHF 152 (251)
T ss_dssp HHHHHHHHHHHGGGTCCEEEEEE-CTGGGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCCHHHHBTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEe-ccchhcCcceEehHHHHHHHHHHCCCEEEEeCCCceeecceeecCchHHHHHHHHh
Confidence 555 34458899999874322 212221 235543 356789999999999542 33579999999999999
Q ss_pred cCCcEEEEeecCCccccCCCCCCCCCcccccccHH--HHhhC----------CCCcchHHHHHHHHhCCCcEEEEcCCCh
Q 019877 238 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ--EVTSK----------DLSVMDMTAITLCQENNIPVVVFNLNQP 305 (334)
Q Consensus 238 l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~--e~~~~----------g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~ 305 (334)
++||+|+|+|||||||++||+.+|++++|+++++. |+.++ |.|.+|++|+..|.++|++++|+|+++|
T Consensus 153 l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~~ 232 (251)
T 2ako_A 153 FDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDL 232 (251)
T ss_dssp TTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred cCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHHHHHHHHHCCCeEEEEeCCCh
Confidence 99999999999999999999999999999999998 76543 2257899999999999999999999999
Q ss_pred hHHHH--HHcCCCCceEEe
Q 019877 306 GNIAK--AIQGERVGTLIG 322 (334)
Q Consensus 306 ~~l~~--~l~g~~~GT~I~ 322 (334)
+.+.+ +++|+.+||+|.
T Consensus 233 ~~l~~~~~~~g~~~GT~i~ 251 (251)
T 2ako_A 233 SVAKTFLLEDKQIGGTLFE 251 (251)
T ss_dssp HHHHHHHHSCCCCSSEEEC
T ss_pred hhhhhhHHhcCCCCceEeC
Confidence 99999 999999999984
No 16
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=100.00 E-value=6.8e-35 Score=274.27 Aligned_cols=216 Identities=23% Similarity=0.284 Sum_probs=174.3
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHcc-cCCCCCChHHHHHHHHHHHHH
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNA 170 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~-~~gl~~~~~d~~~~la~~~n~ 170 (334)
++||||||+ +++++ .+.+.+++++|+.++ .|+++|||||||++++....++ ..+++....+.+++.++.+|.
T Consensus 41 ~iVIKiGGs-l~~~~-----~~~l~~l~~~I~~l~-~G~~vVlV~GGg~~~~~~~~~~~~~gl~~~~l~~v~~~~~~~n~ 113 (276)
T 2ogx_A 41 LQVVKIGGR-VMDRG-----ADAILPLVEELRKLL-PEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNG 113 (276)
T ss_dssp EEEEEECHH-HHTTT-----HHHHHHHHHHHHHHT-TTCEEEEEECCTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEChh-hcCCC-----HHHHHHHHHHHHHHh-CCCeEEEEECcHHHHHHHHhccCcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999 88642 678999999999998 8999999999999977643222 235655555666777788888
Q ss_pred HHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCC----------CCcccChHHHHHHHHHHcCC
Q 019877 171 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGT----------GNPFFTTDTAAALRCAEINA 240 (334)
Q Consensus 171 ~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~----------g~~~~~sD~lAa~lA~~l~A 240 (334)
.+++.++..+|++.+. .....+.+..+|++|.|||++|+. +.+++++|++|+++|.+++|
T Consensus 114 ~l~~~ll~~~g~~~v~----------~~~~~~~i~~lL~~g~IpVi~~~~~~~~~e~~G~~~~~~~~D~~Aa~lA~~l~A 183 (276)
T 2ogx_A 114 HILAAMLASEGVSYVE----------HPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGA 183 (276)
T ss_dssp HHHHHHHGGGTCCBCC----------HHHHHHHHHHHHHHSSEEEEESSCTTGGGCCSSSSSCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCccc----------ccChHHHHHHHHhCCCEEEEcCCcccccccccCCcCCCCChHHHHHHHHHHcCC
Confidence 8888867688987531 111123467899999999999941 13689999999999999999
Q ss_pred cEEEEeecCCccccCCCC--CCCCCcccccccHHHHhhC-CC--CcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCC
Q 019877 241 EVVLKATNVDGVYDDNPR--RNPNARLLDTLTYQEVTSK-DL--SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE 315 (334)
Q Consensus 241 d~LiilTDVdGVyt~dP~--~~p~aklI~~Is~~e~~~~-g~--~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~ 315 (334)
|+|+|+|||||||++||+ .+|++++|+++++.|+.++ +. |.+|+.++..+.+.|++++|+|+++|+.+.++|+|+
T Consensus 184 d~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~ 263 (276)
T 2ogx_A 184 AGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGE 263 (276)
T ss_dssp SEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSCSCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTC
T ss_pred CEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHhCcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCC
Confidence 999999999999999998 8999999999999998876 34 444554444444668899999999999999999999
Q ss_pred CCceEEecC
Q 019877 316 RVGTLIGGT 324 (334)
Q Consensus 316 ~~GT~I~~~ 324 (334)
.+||+|.++
T Consensus 264 ~~GT~i~~~ 272 (276)
T 2ogx_A 264 HVGTLIRTG 272 (276)
T ss_dssp CCSEEEECS
T ss_pred CCceEEccC
Confidence 999999864
No 17
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=100.00 E-value=8.9e-35 Score=276.09 Aligned_cols=225 Identities=18% Similarity=0.213 Sum_probs=176.7
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHH-HHHcccC-----CCCCCh---HH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGNS-----GLDRSS---AD 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g-~~~~~~~-----gl~~~~---~d 159 (334)
+++++||||||+++++ ++.+..++++|+.+++.|+++|||||||++++. ...++.. +++... .+
T Consensus 24 ~~k~iViKlGGs~l~~-------~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~~~~g~R~t~~~~l~ 96 (299)
T 2ap9_A 24 HGKVVVVKYGGNAMTD-------DTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEGDFKGGFRVTTPEVLD 96 (299)
T ss_dssp TTCEEEEEECTHHHHS-------HHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCCCCSSSSCCBCHHHHH
T ss_pred CCCeEEEEECchhhCC-------chHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCcccccCCcccCCHHHHH
Confidence 4689999999999986 457889999999999999999999999999765 2333321 222222 23
Q ss_pred HHHHH-HHHHHHHHHHHHHHHcCCCeeEEeceeccccc-hh-------------------HHH-HHHHHHHhCCCEEEEe
Q 019877 160 YIGML-ATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-EP-------------------YIR-RRAVRHLEKGRVVIFA 217 (334)
Q Consensus 160 ~~~~l-a~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~-~~-------------------~i~-~~i~~lL~~G~IPVi~ 217 (334)
..+++ .+.++..+ +.+|+++|++++.++..+...+. ++ .++ +.+.++|++|.|||++
T Consensus 97 ~~~~~~~G~l~~~l-~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVv~ 175 (299)
T 2ap9_A 97 VARMVLFGQVGREL-VNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVS 175 (299)
T ss_dssp HHHHHHHHTHHHHH-HHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhhHHHHHH-HHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHHHHHHHhCCCeEEEC
Confidence 33333 23466564 55699999999888776531110 00 023 4467899999999999
Q ss_pred CC----CCCcc-cChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-----CCCcchHHHH
Q 019877 218 AG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVMDMTAI 287 (334)
Q Consensus 218 g~----~g~~~-~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-----g~~v~k~~Aa 287 (334)
++ .|..+ +++|++|+++|.+|+||+|+|||||||||++||+ ++++|++|+++|+.++ |.|.+|++||
T Consensus 176 ~v~~~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~Kl~aa 252 (299)
T 2ap9_A 176 TLAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPKVEAC 252 (299)
T ss_dssp SEEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHHHHHH
T ss_pred CeeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHHHHHH
Confidence 83 34444 4999999999999999999999999999999997 4799999999998764 4577899999
Q ss_pred HHHHhCCCc-EEEEcCCChhHH-HHHHcCCCCceEEecC
Q 019877 288 TLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGT 324 (334)
Q Consensus 288 ~~a~~~Gi~-V~I~ng~~~~~l-~~~l~g~~~GT~I~~~ 324 (334)
..|.+.|++ ++|+|+++|+.+ .++++|+++||+|.++
T Consensus 253 ~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~ 291 (299)
T 2ap9_A 253 LRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRG 291 (299)
T ss_dssp HHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECC
T ss_pred HHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecC
Confidence 999999998 999999999986 8999999999999864
No 18
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-34 Score=274.86 Aligned_cols=224 Identities=16% Similarity=0.307 Sum_probs=176.0
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCC---CChHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLD---RSSAD 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~---~~~~d 159 (334)
+.+++||||||+++++ ++.+..++++|+.+++.|+++|||||||++++.. ..++.. +++ ....+
T Consensus 35 ~~k~iVIKlGGs~l~~-------~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~~~~g~R~t~~~~l~ 107 (298)
T 2rd5_A 35 RGKTIVVKYGGAAMTS-------PELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTME 107 (298)
T ss_dssp TTCEEEEEECTHHHHC-------HHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHH
T ss_pred cCCEEEEEECchhhCC-------hhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCccccCCcccCCHHHHH
Confidence 4789999999999986 4678999999999999999999999999987542 333321 111 12344
Q ss_pred HHHHHH-HHHHHHHHHHHHHHcCCCeeEEeceecc-----------ccc---h-hHHH-HHHHHHHhCCCEEEEeCC---
Q 019877 160 YIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMS-----------EVA---E-PYIR-RRAVRHLEKGRVVIFAAG--- 219 (334)
Q Consensus 160 ~~~~la-~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~-----------~~~---~-~~i~-~~i~~lL~~G~IPVi~g~--- 219 (334)
..++++ +.+|..+.. +|.++|++++.+++.+.. |++ . .+++ +.+.++|++|.|||+++.
T Consensus 108 ~~~~~~~G~~n~~l~~-~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~ 186 (298)
T 2rd5_A 108 IVSMVLVGKVNKNLVS-LINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAAD 186 (298)
T ss_dssp HHHHHHHHTHHHHHHH-HHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECGGGHHHHHHTTCEEEEESEEEC
T ss_pred HHHHHHhchHHHHHHH-HHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECHHHHHHHHhCCCEEEEcCeeEC
Confidence 455543 456665544 699999999887754321 111 1 1233 335789999999999983
Q ss_pred -CCCcc-cChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CCCcchHHHHHHH
Q 019877 220 -TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLC 290 (334)
Q Consensus 220 -~g~~~-~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~~v~k~~Aa~~a 290 (334)
.|..+ +++|++|+++|.+|+||+|+|+|||||||++||+ | +++|++|+++|+.++ |.|.+|++|+..+
T Consensus 187 ~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl~aa~~a 263 (298)
T 2rd5_A 187 DSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRS 263 (298)
T ss_dssp TTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHHHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHHHHHHHH
Confidence 34445 4999999999999999999999999999999997 4 899999999988653 2367799999999
Q ss_pred HhCCCc-EEEEcCCChhHH-HHHHcCCCCceEEec
Q 019877 291 QENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGG 323 (334)
Q Consensus 291 ~~~Gi~-V~I~ng~~~~~l-~~~l~g~~~GT~I~~ 323 (334)
.++|++ ++|+|++.|+.| .++++|+++||+|.+
T Consensus 264 ~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 264 LAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp HHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred HHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence 999998 999999999998 899999999999964
No 19
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=100.00 E-value=2.6e-34 Score=275.77 Aligned_cols=225 Identities=18% Similarity=0.267 Sum_probs=176.0
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCC---CChHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLD---RSSAD 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~---~~~~d 159 (334)
+++++||||||++|++ ++.+..++++|+.+++.|+++|||||||++++.. ..++.. |++ ....+
T Consensus 48 ~~k~iVIKlGGs~l~~-------~~~~~~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~~g~Rvt~~~~l~ 120 (321)
T 2v5h_A 48 AGRTVVVKYGGAAMKQ-------EELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTME 120 (321)
T ss_dssp TTCEEEEEECTHHHHS-------HHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCBSSSSBCBCHHHHH
T ss_pred CCCeEEEEECchhhCC-------chHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCccccCCcccCCHHHHH
Confidence 6789999999999986 4678999999999999999999999999997642 333311 111 12334
Q ss_pred HHHHHH-HHHHHHHHHHHHHHcCCCeeEEeceecc----------ccch----hHHH-HHHHHHHhCCCEEEEeCC----
Q 019877 160 YIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMS----------EVAE----PYIR-RRAVRHLEKGRVVIFAAG---- 219 (334)
Q Consensus 160 ~~~~la-~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~----------~~~~----~~i~-~~i~~lL~~G~IPVi~g~---- 219 (334)
.+++++ +.+|..|+. +|+++|++++.++..+.. |.+. .+++ +.+.++|++|.|||+++.
T Consensus 121 ~~~~~~~G~in~~l~~-~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~~ 199 (321)
T 2v5h_A 121 VVEMVLVGRVNKDIVS-RINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADE 199 (321)
T ss_dssp HHHHHHHHTHHHHHHH-HHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEECGGGTHHHHHTTCEEEEESEEECT
T ss_pred HHHHHHhChHHHHHHH-HHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEecHHHHHHHHHCCCeEEEeCceECC
Confidence 455543 456666554 699999998877654321 2211 1233 335789999999999962
Q ss_pred CCCccc-ChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CCCcchHHHHHHHH
Q 019877 220 TGNPFF-TTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQ 291 (334)
Q Consensus 220 ~g~~~~-~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~~v~k~~Aa~~a~ 291 (334)
.|..++ |+|++|+++|.+++||+|+|+|||||||++||+ ++++|++|++.|+.++ |.|.+|++|+..|.
T Consensus 200 ~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl~Aa~~a~ 276 (321)
T 2v5h_A 200 NGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKR---PESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSL 276 (321)
T ss_dssp TSCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHH
T ss_pred CCCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 344555 999999999999999999999999999999997 5899999999988653 23677999999999
Q ss_pred hCCCc-EEEEcCCChhHH-HHHHcCCCCceEEecC
Q 019877 292 ENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGT 324 (334)
Q Consensus 292 ~~Gi~-V~I~ng~~~~~l-~~~l~g~~~GT~I~~~ 324 (334)
++|++ ++|+|++.|+.| .++++++..||+|.++
T Consensus 277 ~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~ 311 (321)
T 2v5h_A 277 AQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 311 (321)
T ss_dssp HTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC
T ss_pred HcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECC
Confidence 99998 999999999998 8899999999999864
No 20
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=100.00 E-value=1.8e-34 Score=270.19 Aligned_cols=220 Identities=22% Similarity=0.229 Sum_probs=169.6
Q ss_pred eEEEEeCCccccCCC-CCCCCHHHHHHHHHHHHHHHhCC------CeEEEEECCchHHHHHHHcccCCCCCC---hHHH-
Q 019877 92 RVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLG------IEVAIVVGGGNIFRGASAAGNSGLDRS---SADY- 160 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~-~~~l~~~~l~~ia~~Ia~l~~~G------~~vVlVhGgG~~~~g~~~~~~~gl~~~---~~d~- 160 (334)
++|||+||++|++++ ++.++.+.+++++++|+.+++.| .++|||||||+++++ .+...++..+ +.++
T Consensus 8 ~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~i~~l~~~G~~~~~~~~vVlVhGGG~~~~~--~~~~lgi~~~~~~~~~~~ 85 (266)
T 3k4o_A 8 LTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHP--VAKKYLKIEDGKKIFINM 85 (266)
T ss_dssp EEEEEECTTSSCCTTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHH--HHGGGEEECSSSEEECCH
T ss_pred EEEEEEchHHeeCCCccCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEeCchHHHHH--HHHHcCCCcccCcccccc
Confidence 799999999999864 67899999999999999999888 999999999999766 2333344433 1121
Q ss_pred -HHHHH-----HHHHHHHHHHHHHHcCCCeeEEeceeccccc-hhHHH-HHHHHHHhCCCEEEEeCC------CCCcccC
Q 019877 161 -IGMLA-----TVMNAIFLQATMESIGIPTRVQTAFRMSEVA-EPYIR-RRAVRHLEKGRVVIFAAG------TGNPFFT 226 (334)
Q Consensus 161 -~~~la-----~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~-~~~i~-~~i~~lL~~G~IPVi~g~------~g~~~~~ 226 (334)
.++.. ..+|..+.+ +|.++|++++.+++.+..... ..+++ +.+..+|++|+|||++++ .+.++++
T Consensus 86 ~~G~r~T~~a~~~ln~~l~~-~l~~~G~~a~~l~~~d~~~~~~g~~v~~~~i~~lL~~g~ipVi~~~~~~~~~g~~~~~~ 164 (266)
T 3k4o_A 86 EKGFWEIQRAMRRFNNIIID-TLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIIS 164 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHTTTCCEEEECGGGTCEESSSCBCCCHHHHHHHHTTCEEEEECEEEEESSSCEEEEC
T ss_pred cCceeHHHHHHHHHHHHHHH-HHHHCCCcEEEeeHHHcCcccCceEecHHHHHHHHHCCCEEEEeCCEEEcCCCCeeeeC
Confidence 23322 237877654 599999999988876653221 02333 446789999999999983 2356799
Q ss_pred hHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHH---Hhh--------C--CCCcchHHHHHHHHhC
Q 019877 227 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE---VTS--------K--DLSVMDMTAITLCQEN 293 (334)
Q Consensus 227 sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e---~~~--------~--g~~v~k~~Aa~~a~~~ 293 (334)
+|++|+++|.+++||+|+++||||||| +||+.. ++++..| +.+ . |.|.+|++++..+.+
T Consensus 165 ~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~~i------~~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~a~~- 236 (266)
T 3k4o_A 165 GDDIVPYLANELKADLILYATDVDGVL-IDNKPI------KRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKC- 236 (266)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESSSSSB-SSSSBC------SEECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCeEE-eCCeec------CcCCHHHHHHHHHHhccccCCcccCCHHHHHHHHHHHhc-
Confidence 999999999999999999999999999 787644 4444322 211 1 236789999988877
Q ss_pred CCcEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 294 NIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 294 Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
+++|+|+++|+.|.++|+|+++||+|.+.
T Consensus 237 --~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 237 --RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp --EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred --CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 99999999999999999999999999874
No 21
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=100.00 E-value=3.7e-33 Score=261.57 Aligned_cols=216 Identities=22% Similarity=0.355 Sum_probs=164.5
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHHHHccc-CCCCCChHHHHHHHHHHHH
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN-SGLDRSSADYIGMLATVMN 169 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~~~~~~-~gl~~~~~d~~~~la~~~n 169 (334)
+++|||+||+++++++ .+.+.+++++|+.+++. +++|||||||+++++...++. .+++....+...+.+..++
T Consensus 37 ~~iVIKlGGs~l~~~~-----~~~~~~la~~I~~l~~~-~~vVlVhGGg~~~~~~~~~~~~~g~~~~~~~~~~~~a~G~~ 110 (270)
T 2ogx_B 37 DATVIKIGGQSVIDRG-----RAAVYPLVDEIVAARKN-HKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQN 110 (270)
T ss_dssp TEEEEEECTTTTGGGC-----HHHHHHHHHHHHHHTTT-CEEEEEECCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEechHHhCCCC-----HHHHHHHHHHHHHHhcC-CcEEEEECChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 4899999999999742 57899999999999876 899999999998766443322 3453333333333333345
Q ss_pred HHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCC------------CcccChHHHHHHHHHH
Q 019877 170 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTG------------NPFFTTDTAAALRCAE 237 (334)
Q Consensus 170 ~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g------------~~~~~sD~lAa~lA~~ 237 (334)
..+++.+|.++|++.+ +. .++ ..+.++|++|.|||++|+.+ .+++++|++|+++|.+
T Consensus 111 ~l~~~~~l~~~G~~~v--t~---~d~------~~i~~lL~~g~ipVi~g~~g~~~~~~~~~~g~~~~~~~D~~Aa~lA~~ 179 (270)
T 2ogx_B 111 AAMLGQLLAKHGIPVV--GG---AGL------SAVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQ 179 (270)
T ss_dssp HHHHHHHHGGGTCCBC--CS---STT------CHHHHHCTTCCEEEEECSCTTGGGCCCCSSSSSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcee--cH---hhH------HHHHHHHhCCCEEEEeCCccccccccccccccCCCCCcHHHHHHHHHh
Confidence 5556666888998732 11 111 12578999999999998621 3569999999999999
Q ss_pred cCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhCC--CCcchHHHHHHHH--hCCCcEEEEcCCChhHHHHHHc
Q 019877 238 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKD--LSVMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 238 l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g--~~v~k~~Aa~~a~--~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
++||+|+++|||||||++||+.+|++++|++++++|+.++. ...++......+. +.+++++|+|+++|+.+.++++
T Consensus 180 l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~g~~~~ggm~~kl~aa~~~~~v~I~~g~~~~~l~~~l~ 259 (270)
T 2ogx_B 180 FGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALA 259 (270)
T ss_dssp HTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTCCCTTSCHHHHHHHHHCSSCCEEEEEETTSTTHHHHHHT
T ss_pred cCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhcCCCcccHHHHHHHHHhhcCCcEEEEeCCCchHHHHHHc
Confidence 99999999999999999999999999999999999987752 1233332222222 3567999999999999999999
Q ss_pred CCCCceEEec
Q 019877 314 GERVGTLIGG 323 (334)
Q Consensus 314 g~~~GT~I~~ 323 (334)
|+.+||+|.+
T Consensus 260 g~~~GT~i~~ 269 (270)
T 2ogx_B 260 GEHVGTIITA 269 (270)
T ss_dssp TCCCSEEEEC
T ss_pred CCCCCeEecC
Confidence 9999999975
No 22
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=100.00 E-value=2.2e-34 Score=272.14 Aligned_cols=229 Identities=16% Similarity=0.186 Sum_probs=166.1
Q ss_pred CCeEEEEeCCccccCCC-CCCCCHHHHHHHHHHHHHHHhCCC-eEEEEECCchHHHHHHHcccCCCCCChHHHHHHHH-H
Q 019877 90 WQRVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGI-EVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLA-T 166 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~-~~~l~~~~l~~ia~~Ia~l~~~G~-~vVlVhGgG~~~~g~~~~~~~gl~~~~~d~~~~la-~ 166 (334)
.+++||||||++|++++ ++.++.+.+++++++|+.+++.|+ ++|||||||++++.. +...+++....+.....+ .
T Consensus 23 ~~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~--l~~~~~~~~~~~~~~~vt~g 100 (286)
T 3d40_A 23 PDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGA--IRDHDSTHAFSLAGLTEATF 100 (286)
T ss_dssp CSEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC--------------CCTTHHHHHHHH
T ss_pred CCEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHH--HHHcCCCcccchhcchhhHH
Confidence 35899999999999864 567899999999999999999998 699999999997653 222333322211111111 2
Q ss_pred HHHHHHHHHHHHHcCCCeeEEeceecccc--chhHHH-HHHHHHHhCCCEEEEeCC-----CC-CcccChHHHHHHHHHH
Q 019877 167 VMNAIFLQATMESIGIPTRVQTAFRMSEV--AEPYIR-RRAVRHLEKGRVVIFAAG-----TG-NPFFTTDTAAALRCAE 237 (334)
Q Consensus 167 ~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~--~~~~i~-~~i~~lL~~G~IPVi~g~-----~g-~~~~~sD~lAa~lA~~ 237 (334)
.++.. +..+|.++|++++.+.+.+.... +...++ +.+..+|++|.|||++|+ .+ .+++++|++|+++|.+
T Consensus 101 ~l~~~-l~~~l~~~G~~a~~l~~~~~~~t~dg~~~~~~~~i~~lL~~g~IpVi~gd~~~~~~g~~~~~~~D~~Aa~lA~~ 179 (286)
T 3d40_A 101 EVKKR-WAEKLRGIGVDAFPLQLAAMCTLRNGIPQLRSEVLRDVLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLPM 179 (286)
T ss_dssp HHHHH-HHHHHHHTTCCEEECCGGGTEEEETTEEEECCSHHHHHHHTTCEEEEECEEEEBTTSCEEEECGGGHHHHTTTT
T ss_pred HHHHH-HHHHHHHcCCcEEEEEeecCCcccCCeEEehHHHHHHHHHCcCEEEEcCCeEEcCCCCEEeeCHHHHHHHHHHh
Confidence 23433 34458999999886655432100 001111 346789999999999983 12 2569999999999999
Q ss_pred -cCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------------CCCcchHHHHHHHHhCCCcEEEEcCC
Q 019877 238 -INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------------DLSVMDMTAITLCQENNIPVVVFNLN 303 (334)
Q Consensus 238 -l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------------g~~v~k~~Aa~~a~~~Gi~V~I~ng~ 303 (334)
++||+|+|+|||||||++||+ ++++|++|++.|+.++ |.|.+|++|+..|.++|++++|+|++
T Consensus 180 ~l~Ad~LiilTDVdGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl~Aa~~a~~~gv~v~I~~g~ 256 (286)
T 3d40_A 180 VEGRLRVVTLTDVDGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRGD 256 (286)
T ss_dssp CCSCEEEEEEESSSSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred hCCCCEEEEecCCCeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 999999999999999999998 7999999998753221 34567999999999999999999999
Q ss_pred ChhHHHHHHcC-----CCC-ceEEecC
Q 019877 304 QPGNIAKAIQG-----ERV-GTLIGGT 324 (334)
Q Consensus 304 ~~~~l~~~l~g-----~~~-GT~I~~~ 324 (334)
+|+.+.+++++ +.+ ||.|..+
T Consensus 257 ~p~~l~~l~t~~~~~~~~~~~t~i~~~ 283 (286)
T 3d40_A 257 PGSDLEFLTAPFSSWPAHVRSTRITTT 283 (286)
T ss_dssp TTCCCGGGGSCGGGSCTTCCCEEEEC-
T ss_pred CCCcHHHHhcCcccCcccccceeeeec
Confidence 99999999999 776 9999754
No 23
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=100.00 E-value=9.4e-33 Score=259.93 Aligned_cols=221 Identities=19% Similarity=0.238 Sum_probs=172.2
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHH-HHHcccC-----CCC---CChHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGNS-----GLD---RSSAD 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g-~~~~~~~-----gl~---~~~~d 159 (334)
+++++||||||+++++ ++.+.+++++|+.+++.|+++|||||||++++. ...++.. +++ +...+
T Consensus 20 ~~~~iViKlGGs~l~~-------~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~~~~~~~~g~r~t~~~~l~ 92 (282)
T 2bty_A 20 YGKTFVIKFGGSAMKQ-------ENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHRVTDEKTME 92 (282)
T ss_dssp TTCEEEEEECSHHHHS-------HHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCBSSSSBCBCHHHHH
T ss_pred cCCeEEEEECchhhCC-------hhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCCccccCCcccCCHHHHH
Confidence 3689999999999986 467899999999999999999999999998755 2333321 222 12334
Q ss_pred HHHHHH-HHHHHHHHHHHHHHcCCCeeEEeceecc-----------ccch----hHHH-HHHHHHHhCCCEEEEeCC---
Q 019877 160 YIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMS-----------EVAE----PYIR-RRAVRHLEKGRVVIFAAG--- 219 (334)
Q Consensus 160 ~~~~la-~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~-----------~~~~----~~i~-~~i~~lL~~G~IPVi~g~--- 219 (334)
..+++. +.+|..+ ..+|+++|++++.+++.+.. |.+. .+++ +.+.++|++|.|||++|+
T Consensus 93 ~~~~~~~G~~~~~l-~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~~~i~~ll~~g~IpVi~~v~~~ 171 (282)
T 2bty_A 93 IVEMVLVGKINKEI-VMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIG 171 (282)
T ss_dssp HHHHHHHHTHHHHH-HHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEESEEEC
T ss_pred HHHHHHhhHHHHHH-HHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecHHHHHHHHHCCCEEEECCCccC
Confidence 444443 3455554 45699999999887754321 1111 1344 346789999999999983
Q ss_pred -CCCcc-cChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CCCcchHHHHHHH
Q 019877 220 -TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLC 290 (334)
Q Consensus 220 -~g~~~-~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~~v~k~~Aa~~a 290 (334)
.|..+ +++|++|+++|.+++||+|+++|||||||++ | ++|++++++|+.++ |.|.+|++|+..|
T Consensus 172 ~~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~-----~--~~i~~i~~~e~~~~~~~g~~~gGM~~K~~aa~~a 244 (282)
T 2bty_A 172 EDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD-----G--KLISTLTPDEAEELIRDGTVTGGMIPKVECAVSA 244 (282)
T ss_dssp SSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET-----T--EECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC-----c--hhhhhCCHHHHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 34444 5999999999999999999999999999996 2 89999999988653 2377899999999
Q ss_pred HhCCCc-EEEEcCCChhHH-HHHHcCCCCceEEecC
Q 019877 291 QENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGT 324 (334)
Q Consensus 291 ~~~Gi~-V~I~ng~~~~~l-~~~l~g~~~GT~I~~~ 324 (334)
.++|++ ++|+|++.|+.+ .++++++..||+|.++
T Consensus 245 ~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 280 (282)
T 2bty_A 245 VRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL 280 (282)
T ss_dssp HHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred HHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence 999998 999999999998 7899999999999764
No 24
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=100.00 E-value=1.6e-32 Score=260.94 Aligned_cols=223 Identities=17% Similarity=0.253 Sum_probs=172.0
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHH-HHHcccC-----CCC---CChHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGNS-----GLD---RSSAD 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g-~~~~~~~-----gl~---~~~~d 159 (334)
+++++|||+||++++++ +.+..++++|+.+++.|+++|||||||++++. ...++.. +++ ....+
T Consensus 25 ~~k~iVIKlGGs~l~~~-------~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~~g~rvt~~~~l~ 97 (300)
T 2buf_A 25 VGKTLVIKYGGNAMESE-------ELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMD 97 (300)
T ss_dssp TTCEEEEEECCTTTTSS-------HHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCCBSSSSBCBCHHHHH
T ss_pred cCCeEEEEECchhhCCc-------hHHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCccccCCeecCCHHHHH
Confidence 46899999999999873 47889999999999999999999999999764 2333321 122 12244
Q ss_pred HHHHHH-HHHHHHHHHHHHHHcCCCeeEEeceecc----------------------ccch----hHHHH-HHHHHHhCC
Q 019877 160 YIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMS----------------------EVAE----PYIRR-RAVRHLEKG 211 (334)
Q Consensus 160 ~~~~la-~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~----------------------~~~~----~~i~~-~i~~lL~~G 211 (334)
..++++ +.++.. ++.+|+++|+++..+++.+.. +.+. .+++. .+..+|++|
T Consensus 98 ~~~~~~~G~~~~~-l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g 176 (300)
T 2buf_A 98 VVEMVLGGQVNKD-IVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGD 176 (300)
T ss_dssp HHHHHHHHTHHHH-HHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH-HHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEECHHHHHHHHHCC
Confidence 455543 344544 445699999998877654211 1111 13443 356799999
Q ss_pred CEEEEeCC----CCCcc-cChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CC
Q 019877 212 RVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DL 279 (334)
Q Consensus 212 ~IPVi~g~----~g~~~-~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~ 279 (334)
.|||+++. .|..+ +++|++|+++|.+++||+|+|+|||||||++ ++++|+++++.|+.++ |.
T Consensus 177 ~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~gg 250 (300)
T 2buf_A 177 FIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIYGG 250 (300)
T ss_dssp CEEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSCTT
T ss_pred CEEEEcCceeCCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCCCc
Confidence 99999962 34445 4999999999999999999999999999996 3789999999988653 33
Q ss_pred CcchHHHHHHHHhCCCc-EEEEcCCChhHH-HHHHcCCCCceEEecCC
Q 019877 280 SVMDMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGTW 325 (334)
Q Consensus 280 ~v~k~~Aa~~a~~~Gi~-V~I~ng~~~~~l-~~~l~g~~~GT~I~~~~ 325 (334)
|.+|++|+..+.++|++ ++|+|++.|+.+ .++++++..||+|.++.
T Consensus 251 M~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~~ 298 (300)
T 2buf_A 251 MLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNRK 298 (300)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECCC
T ss_pred cHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeCC
Confidence 67799999999999998 999999999987 78999988999998754
No 25
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=100.00 E-value=7.2e-33 Score=259.27 Aligned_cols=215 Identities=18% Similarity=0.201 Sum_probs=161.3
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHH-HHHcccC--------CC--CCChHHH
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGNS--------GL--DRSSADY 160 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g-~~~~~~~--------gl--~~~~~d~ 160 (334)
++||||||++++ .+++++++|+.+++.|+++|||||||++++. ...++.. |+ +....+.
T Consensus 1 ~iViKlGGs~l~----------~~~~~~~~i~~l~~~G~~vViVhGgg~~~~~~~~~~~~~~~~~~~~~g~~~rvt~~~~ 70 (269)
T 2egx_A 1 MIVVKVGGAEGI----------NYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKT 70 (269)
T ss_dssp CEEEEECCSTTC----------CHHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHHTTCCCCC-------CCCCCCHHH
T ss_pred CEEEEECHHHHH----------HHHHHHHHHHHHHHCCCeEEEEECChHHHHHHHHHcCCccccccccCCccCcCCCHHH
Confidence 589999999986 3788999999999999999999999998754 2333321 11 2222344
Q ss_pred HHHHHHH----HHHHHHHHHHHHcCCCeeEEeceeccc-----c-------------------ch-hHHH-HHHHHHHhC
Q 019877 161 IGMLATV----MNAIFLQATMESIGIPTRVQTAFRMSE-----V-------------------AE-PYIR-RRAVRHLEK 210 (334)
Q Consensus 161 ~~~la~~----~n~~Lv~~~L~~~Gi~a~~l~~~~~~~-----~-------------------~~-~~i~-~~i~~lL~~ 210 (334)
++++.+. ++.. +..+|+++|+++..+++.+..- . ++ .+++ +.+..+|++
T Consensus 71 l~~~~~~~~G~i~~~-l~~~l~~~G~~a~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~D~g~~g~i~~v~~~~i~~ll~~ 149 (269)
T 2egx_A 71 LEIFEMVYCGLVNKR-LVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQA 149 (269)
T ss_dssp HHHHHHHHHTHHHHH-HHHHHHHTTCCEEEEETTGGGCEEECBC----------------CCEECCCEECHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHH-HHHHHHHCCCCeEEeCCCCccceeeeecccccccccccccCCcCCCCCCceEECHHHHHHHHHC
Confidence 4444433 3433 4456999999998887755210 0 01 1244 346789999
Q ss_pred CCEEEEeCC----CC-CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHh--hC-----C
Q 019877 211 GRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT--SK-----D 278 (334)
Q Consensus 211 G~IPVi~g~----~g-~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~--~~-----g 278 (334)
|.|||+++. .| ..++++|++|+++|.+++||+|+++|||||||+ || .|++++|++++++|+. ++ |
T Consensus 150 g~ipVi~~v~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~-dp--~~~a~~i~~i~~~e~~~~~l~~~~~g 226 (269)
T 2egx_A 150 GYLPVLTPPALSYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLA-RY--PDEASLVREIPVERIEDPEYLALAQG 226 (269)
T ss_dssp TCEEEEECCEEETTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSCBC---------CBCCEECHHHHHCHHHHTTSCH
T ss_pred CCEEEEcCcEECCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCchhhhc-CC--CCCccccccCCHHHhhHHHhcCCCCC
Confidence 999999962 23 356899999999999999999999999999999 89 3789999999999997 54 3
Q ss_pred CCcchHHHHHHHHhCCC-cEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 279 LSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 279 ~~v~k~~Aa~~a~~~Gi-~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
.|.+|++|+..|.++|+ +++|+|+++|+.+.++|+| .||+|.
T Consensus 227 gm~~Kl~aa~~a~~~gv~~v~I~~g~~~~~l~~~l~g--~GT~i~ 269 (269)
T 2egx_A 227 RMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRALSG--EGTVVR 269 (269)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEESSSSSHHHHHHTT--CSEEEC
T ss_pred chHHHHHHHHHHHHcCCCeEEEEeCCCchHHHHHhCC--CCeEEC
Confidence 36779999999999999 8999999999999999987 799984
No 26
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=100.00 E-value=1.6e-32 Score=272.16 Aligned_cols=218 Identities=22% Similarity=0.320 Sum_probs=169.7
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEC-CchHHHHH-HHccc--CCCCCChHHHHHHHH
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG-GGNIFRGA-SAAGN--SGLDRSSADYIGMLA 165 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhG-gG~~~~g~-~~~~~--~gl~~~~~d~~~~la 165 (334)
|+++|+||||+++.+ .+.+++++++|+.+++.|+++||||| +|++.+.. ...+. ...+.+..+.+.+.+
T Consensus 1 m~~iViK~GGssl~~-------~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~~~~~~~~~~d~~~a~G 73 (421)
T 3ab4_A 1 MALVVQKYGGSSLES-------AERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNPVPPAREMDMLLTAG 73 (421)
T ss_dssp -CEEEEEECSGGGSS-------HHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCeEEEEEChhHhCC-------HHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhhccCCCHHHHHHHHHHH
Confidence 578999999999985 57899999999999999999999997 57776553 22221 112233445555667
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEeceeccc-cch----hH---HH-HHHHHHHhCCCEEEEeCCC------CC----cccC
Q 019877 166 TVMNAIFLQATMESIGIPTRVQTAFRMSE-VAE----PY---IR-RRAVRHLEKGRVVIFAAGT------GN----PFFT 226 (334)
Q Consensus 166 ~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~-~~~----~~---i~-~~i~~lL~~G~IPVi~g~~------g~----~~~~ 226 (334)
+.++..++..+|+++|+++.++++.+..- ... .. ++ +.+.++|+.|.|||++|+. |. .+++
T Consensus 74 e~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~i~~~l~~g~ipVv~g~~g~~~~~g~~~tlgrg~ 153 (421)
T 3ab4_A 74 ERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALDEGKICIVAGFQGVNKETRDVTTLGRGG 153 (421)
T ss_dssp HHHHHHHHHHHHHHTTCCEEECCCC-----------------CCHHHHHHHHHTTCEEEC------------------CC
T ss_pred HHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCCeeechhhHHHHHHHHhCCCEEEEeCCcCcCCCCCceEEeCCCC
Confidence 78888888888999999998887765421 111 11 12 4467789999999998862 22 2459
Q ss_pred hHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCC
Q 019877 227 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLN 303 (334)
Q Consensus 227 sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~ 303 (334)
+|++|+++|.+|+||+|++||||||||++||+.+|++++|++|+|+|+.++ |.+++|++|+.+|.++|||++|.|++
T Consensus 154 sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~~~a~~~gi~v~I~n~~ 233 (421)
T 3ab4_A 154 SDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSY 233 (421)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcCCcCchHHHHHHHHHcCCCEEEecCc
Confidence 999999999999999999999999999999999999999999999998874 78999999999999999999999998
Q ss_pred ChhHHHHHHcCCCCceEEecC
Q 019877 304 QPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 304 ~~~~l~~~l~g~~~GT~I~~~ 324 (334)
+| ..||+|.++
T Consensus 234 ~~----------~~GT~I~~~ 244 (421)
T 3ab4_A 234 SN----------DPGTLIAGS 244 (421)
T ss_dssp SC----------CCCEEECSC
T ss_pred CC----------CCCeEEEec
Confidence 86 579999865
No 27
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=100.00 E-value=1.3e-32 Score=283.64 Aligned_cols=220 Identities=21% Similarity=0.247 Sum_probs=176.7
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHc-ccCC--CCCChHHHHHHHH
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-GNSG--LDRSSADYIGMLA 165 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~-~~~g--l~~~~~d~~~~la 165 (334)
|+++|+||||+++.+ .+.+++++++|+.+++.|+++|||||| |...+.+..+ .... .+.+..|.+.+.|
T Consensus 1 m~~iViK~GGssl~~-------~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~~~~~~~~~~d~l~s~G 73 (600)
T 3l76_A 1 MALIVQKFGGTSVGT-------VERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQISPNPCRREMDMLLSTG 73 (600)
T ss_dssp -CEEEEEECSGGGSS-------HHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CceEEEEeCCCCcCC-------HHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhhccCCCHHHHHHHHHHh
Confidence 578999999999986 579999999999999999999999999 8887764322 1111 1222334444567
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEeceecccc-----chh---HHH-HHHHHHHhCCCEEEEeCCC-----C------Cccc
Q 019877 166 TVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AEP---YIR-RRAVRHLEKGRVVIFAAGT-----G------NPFF 225 (334)
Q Consensus 166 ~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~-----~~~---~i~-~~i~~lL~~G~IPVi~g~~-----g------~~~~ 225 (334)
+.++..+++.+|+++|++++++++++..-. ++. .++ +.+.++|+.|.|||++|+. | +.++
T Consensus 74 e~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~i~~ll~~g~IpVv~Gf~g~~~~g~~~~~tlgrG 153 (600)
T 3l76_A 74 EQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRPDRLEHHLREGKVVVVAGFQGISSVEHLEITTLGRG 153 (600)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-------CCEEEECCHHHHHTTTCEEEEECEEEC----CEEEECCCTT
T ss_pred HHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCCceeccccHHHHHHHHhCCCEEEEECCeecCCCCCEEEecCCCC
Confidence 778999999899999999999987764211 111 112 3467899999999998752 2 3456
Q ss_pred ChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcC
Q 019877 226 TTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNL 302 (334)
Q Consensus 226 ~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng 302 (334)
++|++|+++|.+|+||+|++||||||||++||+.+|++++|++++|+|+.++ |.++|+++|+.+|.++|||++|.|+
T Consensus 154 gsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~a~~~a~~~gipv~I~n~ 233 (600)
T 3l76_A 154 GSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSS 233 (600)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHHHHHHHHHHTCCEEEEET
T ss_pred ChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHHHHHHHHHCCCeEEEEEC
Confidence 7999999999999999999999999999999999999999999999999875 7889999999999999999999999
Q ss_pred CChhHHHHHHcCCCCceEEecCCC
Q 019877 303 NQPGNIAKAIQGERVGTLIGGTWN 326 (334)
Q Consensus 303 ~~~~~l~~~l~g~~~GT~I~~~~~ 326 (334)
+++ ..||+|.++.+
T Consensus 234 ~~~----------~~GT~I~~~~~ 247 (600)
T 3l76_A 234 WSD----------EPGTKVVAPPV 247 (600)
T ss_dssp TCC----------SCCEEEECCCC
T ss_pred CCC----------CCCeEEecCCc
Confidence 864 46999987543
No 28
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=100.00 E-value=4.2e-32 Score=259.04 Aligned_cols=223 Identities=15% Similarity=0.199 Sum_probs=165.5
Q ss_pred CeEEEEeCCccccCCCCCCCCH----HHHHHHHHHHHHHHhCCCeEEEEECCchHHHH-HHHcccC-C--CCCChHHHHH
Q 019877 91 QRVLLKVSGEALAGDHTQNIDP----KITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGNS-G--LDRSSADYIG 162 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~----~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g-~~~~~~~-g--l~~~~~d~~~ 162 (334)
+++|||+||++|++ + ..+. +.+++++++|+.+++.|+++|||||||++++. ...++.. . .+....+...
T Consensus 3 k~iVIKlGGs~l~~-~--~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~l~~~~~~~~~~~~~~~l~~~~ 79 (310)
T 2we5_A 3 KKMVVALGGNAILS-N--DASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAADSEKNPAMPLDTCV 79 (310)
T ss_dssp CEEEEECCGGGGCC-S--SCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTCSSSSCCCCHHHHH
T ss_pred cEEEEEEChHHhcC-C--CCChHHHHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhHHHHHcCCCCCCCCCHHHHHHHH
Confidence 68999999999987 2 2343 78999999999999999999999999999875 2333321 1 2344556543
Q ss_pred H-----HHHHHHHHHHHHHHHHcCCCeeEEe--------------------------ceec-----ccc------chhH-
Q 019877 163 M-----LATVMNAIFLQATMESIGIPTRVQT--------------------------AFRM-----SEV------AEPY- 199 (334)
Q Consensus 163 ~-----la~~~n~~Lv~~~L~~~Gi~a~~l~--------------------------~~~~-----~~~------~~~~- 199 (334)
+ ++..++.. ++..|.+.|++....+ ..+. ..+ ++.|
T Consensus 80 a~~~G~l~~~i~~a-l~~~l~~~g~~~~v~~~l~~~~v~~~d~~f~~~~~~vg~~~t~~da~~l~~~~~~~~~~~~~~~~ 158 (310)
T 2we5_A 80 AMTQGSIGYWLSNA-LNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGWR 158 (310)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHTTCCCCEEEBCCEEEECTTCHHHHSCCEEEEEEECHHHHHHHHTTTCCEEECTTSCEE
T ss_pred HHhhhHHHHHHHHH-HHHHHHhcCCchhhHhhhhhhcccccchhhcccCceeEEeccHHHHHHHHhccccccccCCccee
Confidence 2 22223322 2344778888742111 1110 001 0011
Q ss_pred -----------HH-HHHHHHHhCCCEEEEeCCCCC-----------cccChHHHHHHHHHHcCCcEEEEeecCCccccCC
Q 019877 200 -----------IR-RRAVRHLEKGRVVIFAAGTGN-----------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 256 (334)
Q Consensus 200 -----------i~-~~i~~lL~~G~IPVi~g~~g~-----------~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~d 256 (334)
++ +.+..+|++|+|||++|++|. .++|+|++|+++|.+++||+|+|+|||||||+ |
T Consensus 159 ~vv~sp~~i~~v~~~~i~~lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-d 237 (310)
T 2we5_A 159 KVVPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCI-N 237 (310)
T ss_dssp EEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEETTTTEECCCCCCHHHHHHHHHHHTTCSEEEEECSCSSCEE-S
T ss_pred eccCCcccceeehHHHHHHHHHCCCEEEEECCCCCCCcCCCCCCcEeecCHHHHHHHHHHHcCCCEEEEEeCchHhhC-C
Confidence 33 346789999999999965443 34899999999999999999999999999999 7
Q ss_pred CCCCCCCcccccccHHHHhhC--------CCCcchHHHHHHHHhCCC--cEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 257 PRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQENNI--PVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 257 P~~~p~aklI~~Is~~e~~~~--------g~~v~k~~Aa~~a~~~Gi--~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
| .+|++++|+++++.|+.++ |.|.+|++||..+.+.|+ +++|++ ++++.++|+|+..||+|.
T Consensus 238 p-~~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 238 Y-GKPDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp T-TSTTCEECCEEEHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBCCSEEEE
T ss_pred C-CCCCCeECCEEcHHHHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCCCCeEEe
Confidence 8 5889999999999988654 557889999999999999 799997 566888999988999996
No 29
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=100.00 E-value=8.2e-32 Score=250.34 Aligned_cols=218 Identities=19% Similarity=0.200 Sum_probs=170.4
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCC-eEEEEECCchHHHHH-HHccc-----CCCCCChHHHH-
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI-EVAIVVGGGNIFRGA-SAAGN-----SGLDRSSADYI- 161 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~-~vVlVhGgG~~~~g~-~~~~~-----~gl~~~~~d~~- 161 (334)
++++||||||+++++ ++.+++++++|+.+++.|. ++|||||||++++.. ..++. .+++....+.+
T Consensus 2 m~~~ViK~GGs~l~~-------~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~~~~~glr~t~~~~l~ 74 (258)
T 1gs5_A 2 MNPLIIKLGGVLLDS-------EEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQID 74 (258)
T ss_dssp CCCEEEEECGGGGGC-------HHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCEETTEECBCHHHHH
T ss_pred CccEEEEEChhHhCC-------hHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCcceeCCEeeCCHHHHH
Confidence 467999999999986 5689999999999887655 599999999998763 33332 13332333433
Q ss_pred ---HHHHHHHHHHHHHHHHHHcCCCeeEEeceeccc------------cch-hHHH-HHHHHHHhCCCEEEEeCC----C
Q 019877 162 ---GMLATVMNAIFLQATMESIGIPTRVQTAFRMSE------------VAE-PYIR-RRAVRHLEKGRVVIFAAG----T 220 (334)
Q Consensus 162 ---~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~------------~~~-~~i~-~~i~~lL~~G~IPVi~g~----~ 220 (334)
+++++.+|+.+++. |+++|+++..+++.+..- .++ ..++ +.+..+|++|.|||++|+ .
T Consensus 75 ~~~~~l~~~~n~~l~~~-l~~~G~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~i~~ll~~g~ipVi~~~g~~~~ 153 (258)
T 1gs5_A 75 IITGALAGTANKTLLAW-AKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDE 153 (258)
T ss_dssp HHHHHHHTHHHHHHHHH-HHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEEECTT
T ss_pred HHHHHHhccchHHHHHH-HHHCCCCeEEEeecCCCEEEEEEcCCCCCCcCceeEECHHHHHHHHHCCCEEEEeCCcCCCC
Confidence 45778899999875 899999999888765310 011 0122 446789999999999985 3
Q ss_pred CC-cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CCCcchHHHHHHHH-
Q 019877 221 GN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQ- 291 (334)
Q Consensus 221 g~-~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~~v~k~~Aa~~a~- 291 (334)
|. .++++|++|+++|.+++|| |++||||||||++| +++|++++++|+.++ +.|.+|++++..+.
T Consensus 154 g~~~~~~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~ 226 (258)
T 1gs5_A 154 GQLMNVNADQAATALAATLGAD-LILLSDVSGILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAAR 226 (258)
T ss_dssp SCEEECCHHHHHHHHHHHHTCE-EEEEESSSSCBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHH
T ss_pred CcEEEecHHHHHHHHHHHhCCc-EEEEeCCCceECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 33 4689999999999999999 99999999999975 589999999998764 22567888887654
Q ss_pred hCCCcEEEEcCCChhHHHHHHcCCCCceEEe
Q 019877 292 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 322 (334)
Q Consensus 292 ~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~ 322 (334)
+.+++++|+|+++|+.+.++++|+++||+|.
T Consensus 227 ~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 227 TLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp HHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred hCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 5689999999999999999999999999995
No 30
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=99.97 E-value=1.7e-31 Score=255.63 Aligned_cols=228 Identities=16% Similarity=0.149 Sum_probs=167.8
Q ss_pred CCCeEEEEeCCccccCCCC-CC--CCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHH-HHHcccC-C-CCCChHHHHH
Q 019877 89 KWQRVLLKVSGEALAGDHT-QN--IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGNS-G-LDRSSADYIG 162 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~-~~--l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g-~~~~~~~-g-l~~~~~d~~~ 162 (334)
.++++|||+||++|++++. ++ ++.+.+++++++|+.+++.|+++|||||||++++. ...++.. . .+....+..+
T Consensus 3 ~~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~~~~~~t~~~~l~~~~ 82 (316)
T 2e9y_A 3 SGRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEALPPERPRQPLYIAT 82 (316)
T ss_dssp -CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHTSCTTSCCCCHHHHH
T ss_pred CCCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcCCCCCCCCHHHHHHHH
Confidence 3578999999999995431 22 22378999999999999999999999999999875 2333321 1 1344556655
Q ss_pred HH-H----HHHHHHHHHHHHHHcCCCe--------eEEeceec------------cc----------c-----ch-----
Q 019877 163 ML-A----TVMNAIFLQATMESIGIPT--------RVQTAFRM------------SE----------V-----AE----- 197 (334)
Q Consensus 163 ~l-a----~~~n~~Lv~~~L~~~Gi~a--------~~l~~~~~------------~~----------~-----~~----- 197 (334)
+. . ..++.. +...|.++|+++ +.++..+. .+ . ++
T Consensus 83 ~~~~G~i~~~l~~~-l~~~l~~~g~~a~~~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~ 161 (316)
T 2e9y_A 83 AMTQAWIGLLLKHS-LEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGF 161 (316)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHTTCCCCCCEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSE
T ss_pred HHHHhHHHHHHHHH-HHHHHHhcCCCccccceeeEEEeccccccccccccccccccchhhhhhhhhhcceeeeccccccc
Confidence 42 2 233433 344588999986 34444331 00 0 00
Q ss_pred ------h----HHH-HHHHHHHhCCCEEEEeCCCCC--------------cccChHHHHHHHHHHcCCcEEEEeecCCcc
Q 019877 198 ------P----YIR-RRAVRHLEKGRVVIFAAGTGN--------------PFFTTDTAAALRCAEINAEVVLKATNVDGV 252 (334)
Q Consensus 198 ------~----~i~-~~i~~lL~~G~IPVi~g~~g~--------------~~~~sD~lAa~lA~~l~Ad~LiilTDVdGV 252 (334)
+ .++ +.+.++|++|.|||++|++|. .++|+|++|+++|.+|+||+|+|+||||||
T Consensus 162 r~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~g~~g~pv~~~~~g~~~g~~~~id~D~~Aa~lA~~l~Ad~LiilTdVdGV 241 (316)
T 2e9y_A 162 RRVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVVERPGGVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGV 241 (316)
T ss_dssp EEEECCCCEEEETTHHHHHHHHHHCSEEEECGGGCEEEEECTTSCEEECSCCCCHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred eecccCCCcceeehHHHHHHHHHCCCEEEEECCCCCCeeECCCCCeecceeeeCHHHHHHHHHHHcCCCEEEEEeCchHh
Confidence 0 023 346779999999999854322 234999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccccHHHHhhC--------CCCcchHHHHHHHHhCCC-cEEEEcCCChhHHHHHHcCCCCceEEec
Q 019877 253 YDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG 323 (334)
Q Consensus 253 yt~dP~~~p~aklI~~Is~~e~~~~--------g~~v~k~~Aa~~a~~~Gi-~V~I~ng~~~~~l~~~l~g~~~GT~I~~ 323 (334)
|+ ||+ +|++++|++++++|+.++ |.|.+|++||..+.++|+ +++|++ ++++.++|+| ..||+|.+
T Consensus 242 y~-dp~-~p~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~---~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 242 AV-NYG-REGERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGS---LEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp EE-TTT-STTCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEE---STTHHHHHTT-SSSEEEEC
T ss_pred hC-CCC-CCCCcCCcEEcHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECc---HHHHHHHHcC-CCCeEEec
Confidence 99 784 799999999999988654 446789999999999999 799997 5668899998 78999974
No 31
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.97 E-value=3.6e-31 Score=253.16 Aligned_cols=227 Identities=18% Similarity=0.235 Sum_probs=163.1
Q ss_pred CCeEEEEeCCccccCCCC---CCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC----CCCCChHHHH
Q 019877 90 WQRVLLKVSGEALAGDHT---QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS----GLDRSSADYI 161 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~---~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~----gl~~~~~d~~ 161 (334)
++++||||||++|+++++ ..++.+.+++++++|+.+++.|+++|||||||+++... ..++.. ..+....+..
T Consensus 2 ~k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~~~~~~~~~~l~~~ 81 (314)
T 1e19_A 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQATYGIPAQPMDVA 81 (314)
T ss_dssp CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_pred CCEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCccccCCCChhHHHHH
Confidence 468999999999996531 12456789999999999999999999999999886532 222111 1344555554
Q ss_pred HHH-----HHHHHHHHHHHHHHHcCCCe--------eEEeceecc---------c-------------c--------chh
Q 019877 162 GML-----ATVMNAIFLQATMESIGIPT--------RVQTAFRMS---------E-------------V--------AEP 198 (334)
Q Consensus 162 ~~l-----a~~~n~~Lv~~~L~~~Gi~a--------~~l~~~~~~---------~-------------~--------~~~ 198 (334)
.+. +..++.. +...|.++|+++ +.++..+.. . . ++.
T Consensus 82 ~a~~~G~i~~~l~~~-l~~~l~~~gi~a~~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~ 160 (314)
T 1e19_A 82 GAMSQGWIGYMIQQA-LKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRG 160 (314)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSC
T ss_pred HHHHhhHHHHHHHHH-HHHHHHHcCCchhhhhhheeeeecccchhhccccccccceecHHHhhhhhhhcCcccccccccc
Confidence 332 2233322 334588999986 233333210 0 0 000
Q ss_pred ------------HHH-HHHHHHHhCCCEEEEeCCCCC-------------cccChHHHHHHHHHHcCCcEEEEeecCCcc
Q 019877 199 ------------YIR-RRAVRHLEKGRVVIFAAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGV 252 (334)
Q Consensus 199 ------------~i~-~~i~~lL~~G~IPVi~g~~g~-------------~~~~sD~lAa~lA~~l~Ad~LiilTDVdGV 252 (334)
.++ +.+.++|++|+|||++|++|. .++|+|++|+++|.+++||+|+++||||||
T Consensus 161 ~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV~~Gg~giPi~~~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGv 240 (314)
T 1e19_A 161 WRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGA 240 (314)
T ss_dssp EEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred ccccccCcccceeehHHHHHHHHHCCCEEEEeCCCccCeEECCCCcceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEE
Confidence 023 336789999999888753322 258899999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccccHHHHhhC--------CCCcchHHHHHH-HHhCCCcEEEEcCCChhHHHHHHcCCCCceEEec
Q 019877 253 YDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITL-CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 323 (334)
Q Consensus 253 yt~dP~~~p~aklI~~Is~~e~~~~--------g~~v~k~~Aa~~-a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~ 323 (334)
|++|| +|++++|++++++|+.++ |.|.+|+++|.. +.+.+++++|+++ +.+.++|+| +.||+|.+
T Consensus 241 y~~~p--~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~---~~l~~~~~g-~~GT~i~~ 314 (314)
T 1e19_A 241 ALYYG--TEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEALEG-KTGTQVLP 314 (314)
T ss_dssp EETTT--STTCEECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEG---GGHHHHHTT-SSSEEEEC
T ss_pred ECCCC--CCCCeECCEECHHHHHHHHhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecH---HHHHHHHcC-CCCeEEcC
Confidence 99998 588999999999988764 446789999866 5667789999984 568899998 48999964
No 32
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.97 E-value=6.9e-30 Score=254.89 Aligned_cols=221 Identities=19% Similarity=0.227 Sum_probs=164.2
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHH-HHHcccC-----CCCC---ChHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGNS-----GLDR---SSAD 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g-~~~~~~~-----gl~~---~~~d 159 (334)
+++++|||+||++|+++ + +..++++|+.+++.|+++|||||||++++. ...++.. |++. ...+
T Consensus 42 ~~~~iViK~GG~~l~~~-------~-~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~l~ 113 (456)
T 3d2m_A 42 RGTTLVAGIDGRLLEGG-------T-LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQGRTPHYCRGLRVTDETSLG 113 (456)
T ss_dssp TTCEEEEEECGGGGTST-------H-HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTTTCCCCCGGGCCCBCHHHHH
T ss_pred cCCEEEEEEChHHhcCc-------h-HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHCCCCCEeeCCeecCCHHHHH
Confidence 46899999999999863 2 789999999999999999999999998643 2222211 1221 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCe----eEEeceecc-------------ccc---h-hHHH-HHHHHHHhCCCEEEEe
Q 019877 160 YIGMLATVMNAIFLQATMESIGIPT----RVQTAFRMS-------------EVA---E-PYIR-RRAVRHLEKGRVVIFA 217 (334)
Q Consensus 160 ~~~~la~~~n~~Lv~~~L~~~Gi~a----~~l~~~~~~-------------~~~---~-~~i~-~~i~~lL~~G~IPVi~ 217 (334)
..++.++.++..+++ +|. +|+++ +.+++.+.. |.+ + .+++ +.+..+|++|.|||++
T Consensus 114 ~~~~~~G~~~~~l~~-~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~ipIi~ 191 (456)
T 3d2m_A 114 QAQQFAGTVRSRFEA-ALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVWMP 191 (456)
T ss_dssp HHHHHHHHHHHHHHH-HHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHhHHHHHHHH-HHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECHHHHHHHHHCCCeEEEC
Confidence 344444566666555 577 88887 333332210 111 1 1234 3467899999999999
Q ss_pred CC----CC-CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-----CCCcchHHHH
Q 019877 218 AG----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVMDMTAI 287 (334)
Q Consensus 218 g~----~g-~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-----g~~v~k~~Aa 287 (334)
+. .| ..++|+|++|+++|.+++||+|+|+|||||||++ ++++|++|++.|+.++ |.|.+|++||
T Consensus 192 ~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl~aa 265 (456)
T 3d2m_A 192 PLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLISSA 265 (456)
T ss_dssp SEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHHHHH
Confidence 73 23 4468999999999999999999999999999986 4789999999988654 3478899999
Q ss_pred HHHHhCCCc-EEEEcCCChhHH-HHHHcCCCCceEEecCC
Q 019877 288 TLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGTW 325 (334)
Q Consensus 288 ~~a~~~Gi~-V~I~ng~~~~~l-~~~l~g~~~GT~I~~~~ 325 (334)
..|.+.|++ ++|+|+++|+.+ .+++++++.||+|.++.
T Consensus 266 ~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~~ 305 (456)
T 3d2m_A 266 VAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEA 305 (456)
T ss_dssp HHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECCC
T ss_pred HHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeeccc
Confidence 999999996 999999999998 67889999999998654
No 33
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=99.97 E-value=8.6e-30 Score=239.80 Aligned_cols=204 Identities=20% Similarity=0.268 Sum_probs=154.2
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHH-HHHcccC-----CCCCCh---HHHH
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGNS-----GLDRSS---ADYI 161 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g-~~~~~~~-----gl~~~~---~d~~ 161 (334)
|++|||+||+++++. +++++++|+.|++.|+++|||||||++++. ...++.. |++... .+..
T Consensus 37 k~iVIKiGGs~l~~~---------~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg~~~~~~~G~Rvtd~~~l~~v 107 (279)
T 3l86_A 37 DIIVIKIGGVASQQL---------SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQVPVKKINGLRVTSKDDMVLV 107 (279)
T ss_dssp CEEEEEECTTGGGSC---------CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHHHH
T ss_pred ceEEEEEChHHHHhH---------HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcCCCCccCCCcccCcHHHHHHH
Confidence 699999999999852 467899999999999999999999987654 3444422 111111 2223
Q ss_pred HH-HHHHHHHHHHHHHHHHcCCCeeEEeceecc-----ccch-hH--------HH-HHHHHHHhCCCEEEEeCC----CC
Q 019877 162 GM-LATVMNAIFLQATMESIGIPTRVQTAFRMS-----EVAE-PY--------IR-RRAVRHLEKGRVVIFAAG----TG 221 (334)
Q Consensus 162 ~~-la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~-----~~~~-~~--------i~-~~i~~lL~~G~IPVi~g~----~g 221 (334)
++ +++.+|..+.+ +|+++|++++.+++.+.. +.+. .| ++ +.+..+|++|+|||++|. .|
T Consensus 108 ~~~l~G~ln~~i~~-~L~~~G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~~~~i~~lL~~g~IPVi~~v~~~~~G 186 (279)
T 3l86_A 108 SHALLDLVGKNLQE-KLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINKRVIEEFLENRQIPILASLGYSKEG 186 (279)
T ss_dssp HHHHHHTTHHHHHH-HHHHTTCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEECHHHHHHHHHTTCEEEEESEEECTTS
T ss_pred HHHHHHHHHHHHHH-HHHhCCCCEEEEecCcCCEEEeeccCccccCcccccchhhHHHHHHHHhCCcEEEECCcEECCCC
Confidence 33 45566666665 599999999877665431 1110 11 33 446789999999999982 33
Q ss_pred Ccc-cChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhC-------CCCcchHHHHHHHHhC
Q 019877 222 NPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQEN 293 (334)
Q Consensus 222 ~~~-~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~-------g~~v~k~~Aa~~a~~~ 293 (334)
..+ +++|++|+++|.+|+||+|+|+|||||||+ ++++|++++++|+.++ |.|.+|++||..|.+.
T Consensus 187 ~~~~i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~ 259 (279)
T 3l86_A 187 DMLNINADYLATAVAVALAADKLILMTNVKGVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAA 259 (279)
T ss_dssp CEEECCHHHHHHHHHHHTTCSEEEEECSSSSCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHT
T ss_pred CEeecCHHHHHHHHHHHcCCCEEEEEeCCCcccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHc
Confidence 444 599999999999999999999999999995 3689999999887653 4578899999999999
Q ss_pred CCc-EEEEcCCChhHHHHHHcCCCCceEEec
Q 019877 294 NIP-VVVFNLNQPGNIAKAIQGERVGTLIGG 323 (334)
Q Consensus 294 Gi~-V~I~ng~~~~~l~~~l~g~~~GT~I~~ 323 (334)
|++ ++|+|++.. ||+|..
T Consensus 260 Gv~~v~I~~~~~~------------GT~i~~ 278 (279)
T 3l86_A 260 GVGQVLIGDNLLT------------GTLITA 278 (279)
T ss_dssp TCSEEEEESSSSC------------SEEEEC
T ss_pred CCCEEEEeccCCC------------CeEEec
Confidence 998 999998642 999864
No 34
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.97 E-value=9.5e-30 Score=242.33 Aligned_cols=220 Identities=15% Similarity=0.210 Sum_probs=165.1
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCCC---ChHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLDR---SSAD 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~~---~~~d 159 (334)
..+++|||+||++++++ +++++++|+.++..|.++|||||||++++.. ..++.. |++. ...+
T Consensus 47 ~~~~iViK~GGsv~~~~---------~~~~~~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~~~~G~RvTd~~~l~ 117 (307)
T 3zzh_A 47 QQQFAVIKVGGAIISDN---------LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMA 117 (307)
T ss_dssp CSCCEEEEECHHHHHHS---------HHHHHHHHHHHHHBTCCEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHH
T ss_pred CCCEEEEEEChHHhhch---------HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHcCCCccccCCeecCCHHHHH
Confidence 45789999999988752 6889999999999999999999999998773 334321 2222 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeEEecee--cc-----cc---ch-hHHH-HHHHHHHhCCCEEEEeCC----CC-C
Q 019877 160 YIGMLATVMNAIFLQATMESIGIPTRVQTAFR--MS-----EV---AE-PYIR-RRAVRHLEKGRVVIFAAG----TG-N 222 (334)
Q Consensus 160 ~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~--~~-----~~---~~-~~i~-~~i~~lL~~G~IPVi~g~----~g-~ 222 (334)
.+.+....+|..+++. |.+.|++++++++-- .. +. ++ ..++ +.+..+|++|+|||++|+ .| .
T Consensus 118 vv~m~~~~vn~~lv~~-L~~~G~~Av~l~gg~~~a~~~~~~d~g~~G~i~~v~~~~i~~lL~~g~IpVi~~~g~~~~G~~ 196 (307)
T 3zzh_A 118 VVRKCFLEQNLKLVTA-LEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQM 196 (307)
T ss_dssp HHHHHHHHHHHHHHHH-HHHTTCCEEEECSSSEEEEESCHHHHBSBEEEEEECCHHHHHHHHHTCEEEECCCEECTTCBE
T ss_pred HHHHHHHHHHHHHHHH-HHhCCCCeeEEcCCcEEEEecCccccCccccccccCHHHHHHHHHCCCEEEEeCCeECCCCcE
Confidence 4555445788888764 999999999887521 11 00 11 1233 446789999999999984 23 3
Q ss_pred cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHH-HhhC-------CCCcchHHHHHHHHhC-
Q 019877 223 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE-VTSK-------DLSVMDMTAITLCQEN- 293 (334)
Q Consensus 223 ~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e-~~~~-------g~~v~k~~Aa~~a~~~- 293 (334)
.++++|++|+++|.+|+||+|+|+|||||||++ |++++|+++++.| +.++ |.|.+|++|++.|.+.
T Consensus 197 ~~i~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tGGM~~Kl~aa~~a~~~v 271 (307)
T 3zzh_A 197 LNVNADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYL 271 (307)
T ss_dssp EBCCHHHHHHHHHHHHCCSEEEEECSSCSCEET-----TTTEECCEEEHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHS
T ss_pred EecCHHHHHHHHHHhCCCCEEEEEeCCcceecC-----CCCcCCcccCHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999986 4689999999875 3332 3467899876655554
Q ss_pred --CCcEEEEcCCChhHH-HHHHcCCCCceEEecCCC
Q 019877 294 --NIPVVVFNLNQPGNI-AKAIQGERVGTLIGGTWN 326 (334)
Q Consensus 294 --Gi~V~I~ng~~~~~l-~~~l~g~~~GT~I~~~~~ 326 (334)
|.+++|++ ++.+ .+++.++++||+|.+..+
T Consensus 272 ~~g~~v~I~~---~~~ll~elft~~g~GT~I~~~~~ 304 (307)
T 3zzh_A 272 PRSSSVAIIN---VQDLQKELFTDSGAGTMIRRGYK 304 (307)
T ss_dssp CTTCCEEEEC---GGGHHHHHHSCCCCSEEEECCC-
T ss_pred ccCeEEEEeC---ccHHHHHHhcCCCCcEEEecCCc
Confidence 88899998 6776 678899999999987543
No 35
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.96 E-value=2.9e-29 Score=241.21 Aligned_cols=228 Identities=18% Similarity=0.247 Sum_probs=155.3
Q ss_pred CCCCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCCCChHH
Q 019877 86 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLDRSSAD 159 (334)
Q Consensus 86 ~~~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~~~~~d 159 (334)
.+.+||+|||||||++|.+.. ....+.++.+|++|+.|++.|+++|||||||++.-.. ..+... +.+..+.+
T Consensus 20 d~K~MkRIVIklGGnAL~~~~--~~q~~~~~~~a~~Ia~L~~~G~~vVvVHGgGPQVG~i~~~l~~~~~~~~~~~~~~l~ 97 (332)
T 4axs_A 20 DDKHMSRIVIALGGNALGDNP--SQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFA 97 (332)
T ss_dssp ------CEEEEECGGGGCSSH--HHHHHHTHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTTTTSCCCCCCHH
T ss_pred cccCcceEEEEEChhhcCCCh--HHHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHHhccccCCCCCchhH
Confidence 456789999999999997631 1234677889999999999999999999999985321 222211 22333333
Q ss_pred HH-----HHHHHHHHHHHHHHHHHHcCCCeeEEec-----eeccc--------------------------------cch
Q 019877 160 YI-----GMLATVMNAIFLQATMESIGIPTRVQTA-----FRMSE--------------------------------VAE 197 (334)
Q Consensus 160 ~~-----~~la~~~n~~Lv~~~L~~~Gi~a~~l~~-----~~~~~--------------------------------~~~ 197 (334)
.. ++++..++..|.. .|..+|+.....+. .+..| ...
T Consensus 98 ~~~a~tqg~ig~~l~~~l~~-~l~~~gi~~~v~~~vtqv~V~~~D~af~~p~K~iG~~~~~~ea~~l~~~~~~~~~~~~~ 176 (332)
T 4axs_A 98 EAGGMSQGYIGYHMLTAISN-ELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSSKEIAEANNPNSVIVEDAGR 176 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHTTCCCCEEECCCEEEECTTCHHHHSCCEECSCCCC--------CTTSCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcCCCcceeeeeeeeeecccchhhhCcCceeccccCHHHHHHHHhcCCEEEEccCC
Confidence 32 2233344444444 37778876432211 11000 000
Q ss_pred h------------HHH-HHHHHHHhCCCEEEEeCCCC-------------CcccChHHHHHHHHHHcCCcEEEEeecCCc
Q 019877 198 P------------YIR-RRAVRHLEKGRVVIFAAGTG-------------NPFFTTDTAAALRCAEINAEVVLKATNVDG 251 (334)
Q Consensus 198 ~------------~i~-~~i~~lL~~G~IPVi~g~~g-------------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdG 251 (334)
. -++ ..+..++++|+|||..+..+ ..++|+|++|+.+|.+++||+|+|+|||||
T Consensus 177 g~rrvV~sp~p~~ive~~~I~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~LiiLTdV~g 256 (332)
T 4axs_A 177 GFRKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDY 256 (332)
T ss_dssp ---CEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSEEEEECSCSS
T ss_pred CceEECCCCCCceeecHHHHHHhhcCCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCceEEEEecCCc
Confidence 0 023 33567899999988654322 346899999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccccHHHHhhC--------CCCcchHHHHHHHHhCCC--cEEEEcCCChhHHHHHHcCCCCceEE
Q 019877 252 VYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQENNI--PVVVFNLNQPGNIAKAIQGERVGTLI 321 (334)
Q Consensus 252 Vyt~dP~~~p~aklI~~Is~~e~~~~--------g~~v~k~~Aa~~a~~~Gi--~V~I~ng~~~~~l~~~l~g~~~GT~I 321 (334)
||+++|+ |++++|++++.+|+.++ |.|.+|++||..+.+.|. .++|.+ ++.+.++++|+ .||+|
T Consensus 257 v~~~~~~--~~~~~i~~it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~---~~~~~~~l~g~-~GT~I 330 (332)
T 4axs_A 257 VYVDFNK--PTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIAD---LSKVEDALKGL-SGTKI 330 (332)
T ss_dssp CEESTTS--TTCEECSSCBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEEC---STTHHHHTTTS-SSEEE
T ss_pred eEcCCCC--cchhhcccCCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHCCC-CCcEE
Confidence 9998874 77899999999988653 458899999999998876 356654 56688999996 79999
Q ss_pred e
Q 019877 322 G 322 (334)
Q Consensus 322 ~ 322 (334)
.
T Consensus 331 v 331 (332)
T 4axs_A 331 I 331 (332)
T ss_dssp B
T ss_pred e
Confidence 6
No 36
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=99.96 E-value=4.8e-29 Score=252.24 Aligned_cols=221 Identities=21% Similarity=0.260 Sum_probs=171.7
Q ss_pred CCCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHc-cc--------------
Q 019877 87 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-GN-------------- 150 (334)
Q Consensus 87 ~~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~-~~-------------- 150 (334)
+.+.+++|.||||+++.+ .+.++++++.|... .++++|+|+++ |.+.+....+ ..
T Consensus 23 ~~~~~~~V~KFGGTSva~-------~e~i~~va~iI~~~--~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~~~~~~~~~~ 93 (510)
T 2cdq_A 23 DEKGITCVMKFGGSSVAS-------AERMKEVADLILTF--PEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEE 93 (510)
T ss_dssp --CCCCEEEEECTGGGSS-------HHHHHHHHHHHHHC--TTCCEEEEECCSTTHHHHHHHHHHHHTTTCTTTGGGCHH
T ss_pred CCCCCeEEEEECCcccCC-------HHHHHHHHHHHHhc--cCCCEEEEEcCCCCCchHHHHHHHHHhhccccchhHHHH
Confidence 446788999999999986 67899999888643 34677778877 5554443111 10
Q ss_pred ---------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEecee
Q 019877 151 ---------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFR 191 (334)
Q Consensus 151 ---------------------------------------~gl~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~ 191 (334)
.....+..|.+.++|+.+++.+++.+|+++|+++.++++++
T Consensus 94 ~~~i~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~ 173 (510)
T 2cdq_A 94 LSIIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFE 173 (510)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGG
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhH
Confidence 01122334566678999999999999999999999999876
Q ss_pred cc-----ccch------hH--HHHHHHH-HHhCCCEEEEeCCC------C----CcccChHHHHHHHHHHcCCcEEEEee
Q 019877 192 MS-----EVAE------PY--IRRRAVR-HLEKGRVVIFAAGT------G----NPFFTTDTAAALRCAEINAEVVLKAT 247 (334)
Q Consensus 192 ~~-----~~~~------~~--i~~~i~~-lL~~G~IPVi~g~~------g----~~~~~sD~lAa~lA~~l~Ad~LiilT 247 (334)
.. +.+. .+ +...+.+ +++.|.|||++||. | ..++++|++|+++|.+++||+|++||
T Consensus 174 ~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i~T 253 (510)
T 2cdq_A 174 IGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWK 253 (510)
T ss_dssp TTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEE
T ss_pred eeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEEEEe
Confidence 51 1111 12 2344554 67899999998842 2 23567999999999999999999999
Q ss_pred cCCccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecC
Q 019877 248 NVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 324 (334)
Q Consensus 248 DVdGVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~ 324 (334)
||||||++||+.+|+|++|++|+|+|+.++ |.++++++|+.+|.++|||++|.|+++|+ ..||+|.++
T Consensus 254 DVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~gIpv~I~n~~~p~---------~~GT~I~~~ 324 (510)
T 2cdq_A 254 DVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPK---------APGTIITKT 324 (510)
T ss_dssp SSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTT---------SCCEEEESC
T ss_pred CCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHHHHHHHHHHCCCeEEEEccCcCC---------CCCeEEecc
Confidence 999999999999999999999999998775 78899999999999999999999999885 579999875
Q ss_pred C
Q 019877 325 W 325 (334)
Q Consensus 325 ~ 325 (334)
.
T Consensus 325 ~ 325 (510)
T 2cdq_A 325 R 325 (510)
T ss_dssp C
T ss_pred c
Confidence 3
No 37
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=99.96 E-value=4e-29 Score=251.10 Aligned_cols=217 Identities=23% Similarity=0.288 Sum_probs=172.2
Q ss_pred eEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCC-eEEEEECC-chHHHHHHHc----cc--C------------
Q 019877 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI-EVAIVVGG-GNIFRGASAA----GN--S------------ 151 (334)
Q Consensus 92 ~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~-~vVlVhGg-G~~~~g~~~~----~~--~------------ 151 (334)
++|.||||+++.+ .+.++++++.|... +.++ ++|+|.++ |.+.+....+ .. .
T Consensus 2 ~~V~KFGGtSv~~-------~~~i~~va~ii~~~-~~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~ 73 (473)
T 3c1m_A 2 TTVMKFGGTSVGS-------GERIRHVAKIVTKR-KKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIR 73 (473)
T ss_dssp CEEEEECTTTTSS-------HHHHHHHHHHHHHH-HTTCSCEEEEECCSTTHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CEEEEeCCcccCC-------HHHHHHHHHHHHHh-hcCCCCEEEEEcCChhhHHHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 6899999999986 67899999999776 6788 88888888 5554332110 00 0
Q ss_pred ------------------------------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEec
Q 019877 152 ------------------------------------------GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 189 (334)
Q Consensus 152 ------------------------------------------gl~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~ 189 (334)
.++++..|++.++|+.+|+.+++.+|+++|++++++++
T Consensus 74 ~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~ 153 (473)
T 3c1m_A 74 EKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEG 153 (473)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 01122356677789999999999999999999999988
Q ss_pred eecc-----cc--chh--HHH-HHHHHHHhCCCEEEEeCCCC---------CcccChHHHHHHHHHHcCCcEEEEeecCC
Q 019877 190 FRMS-----EV--AEP--YIR-RRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVD 250 (334)
Q Consensus 190 ~~~~-----~~--~~~--~i~-~~i~~lL~~G~IPVi~g~~g---------~~~~~sD~lAa~lA~~l~Ad~LiilTDVd 250 (334)
++.. .. ++. .++ +.+..+|+.|+|||++|+.| ..++++|++|+++|.+++||+|++|||||
T Consensus 154 ~~~~i~t~~~~~~~~~~~~~~~~~i~~ll~~g~ipVv~G~~g~~~~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~i~TDVd 233 (473)
T 3c1m_A 154 GEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVS 233 (473)
T ss_dssp HHHTEEECSCTTSCCEEEECHHHHHHHHHHTTCEEEEESSEEEETTSCEEECCTTTHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred hheeEEEccCCCCccccHhhhHHHHHHHHhCCcEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEeeCCC
Confidence 7651 11 111 122 44667899999999998522 24579999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecCC
Q 019877 251 GVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 325 (334)
Q Consensus 251 GVyt~dP~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~~ 325 (334)
|||++||+.+|++++|+++++.|+.++ |.++|+++|+.+|.++|++++|+|+++|+ ..||+|.+..
T Consensus 234 Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~~m~~~a~~~a~~~gi~v~I~~~~~~~---------~~GT~i~~~~ 302 (473)
T 3c1m_A 234 GVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPE---------SEGTLITNDM 302 (473)
T ss_dssp SCBSSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHHHHHTCCEEEEETTSTT---------SCCEEEESCC
T ss_pred cceeCCCCCCCCCeEecccCHHHHHHHHhcCCcchHHHHHHHHHHcCCEEEEEecCCCC---------CceEEEeccc
Confidence 999999999999999999999998764 77788888999999999999999999885 5799998754
No 38
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=99.96 E-value=6.5e-29 Score=248.05 Aligned_cols=216 Identities=20% Similarity=0.199 Sum_probs=164.7
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-chHHHHHHHcccC-----------------
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGNS----------------- 151 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~~~~g~~~~~~~----------------- 151 (334)
++++|.||||+++.+ .+.++++++.|.. ...++|+|+++ |.+.+....+...
T Consensus 2 m~~~V~KFGGTSv~~-------~e~i~~va~ii~~---~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~i~~i~~~~ 71 (449)
T 2j0w_A 2 SEIVVSKFGGTSVAD-------FDAMNRSADIVLS---DANVRLVVLSASAGITNLLVALAEGLEPGERFEKLDAIRNIQ 71 (449)
T ss_dssp -CCEEEEECSGGGSS-------HHHHHHHHHHHTS---CTTEEEEEECCCTTHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCccCCC-------HHHHHHHHHHHHh---cCCCEEEEeCCCCchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 568999999999986 6788888888753 33478888888 5554443221110
Q ss_pred -----CC--------------------------C--CChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceecc----c
Q 019877 152 -----GL--------------------------D--RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----E 194 (334)
Q Consensus 152 -----gl--------------------------~--~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~----~ 194 (334)
.+ . .+..|.+.++|+.++..++..+|+++|+++.++++++.. +
T Consensus 72 ~~i~~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~l~t~~~ 151 (449)
T 2j0w_A 72 FAILERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDR 151 (449)
T ss_dssp HHHHTTSSSTHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSC
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHheeecCC
Confidence 01 1 233455667889999999999999999999999887651 1
Q ss_pred cc--hhH---HH---HHH-HHHHhCCCEEEEeCCCC---------CcccChHHHHHHHHHHcCCcEEEEeecCCccccCC
Q 019877 195 VA--EPY---IR---RRA-VRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 256 (334)
Q Consensus 195 ~~--~~~---i~---~~i-~~lL~~G~IPVi~g~~g---------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~d 256 (334)
++ +.+ .. .++ ..+++ +.|||++|+.| ..++++|++|+++|.+++||+|++||||||||++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~l~~-~~IpVv~Gf~g~~~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~D 230 (449)
T 2j0w_A 152 FGRAEPDIAALAELAALQLLPRLN-EGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTD 230 (449)
T ss_dssp TTSCCBCHHHHHHHHHHHTHHHHH-HSEEEEESSEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSC
T ss_pred CCCccccHhHhHHHHHHHHHHHhc-CCEEEEeCCeeeCCCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCC
Confidence 11 111 11 122 34454 45999987532 23577999999999999999999999999999999
Q ss_pred CCCCCCCcccccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecCC
Q 019877 257 PRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 325 (334)
Q Consensus 257 P~~~p~aklI~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~~ 325 (334)
|+.+|++++|++++|+|+.++ |.++++++|+.+|.+.|+|++|+|+++|+ ..||+|.+..
T Consensus 231 Pr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~~a~~~gi~v~I~~~~~p~---------~~GT~I~~~~ 293 (449)
T 2j0w_A 231 PRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPR---------AGGTLVCNKT 293 (449)
T ss_dssp TTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTT---------SCCEEEESCC
T ss_pred CCCCCCCEEccCccHHHHHHHHhcCCccchHHHHHHHHHCCCeEEEEECCCCC---------CCeeEEeccc
Confidence 999999999999999998775 77888889999999999999999999885 5799998753
No 39
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.96 E-value=1.6e-28 Score=245.14 Aligned_cols=217 Identities=15% Similarity=0.206 Sum_probs=164.1
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCCCC---hHHH
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLDRS---SADY 160 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~~~---~~d~ 160 (334)
.+++|||+||++++++ +++++++|+.++..|.++|||||||++++.. ..++.. |++.+ ..+.
T Consensus 48 ~~~iVIK~GGsv~~~~---------l~~la~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~~G~RvTd~~tl~v 118 (464)
T 4ab7_A 48 QQFAVIKVGGAIISDN---------LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAV 118 (464)
T ss_dssp -CCEEEEECHHHHHHC---------HHHHHHHHHHHHHTTCCCEEEECCCHHHHHHHHHTTCCCCEETTEECBCHHHHHH
T ss_pred CceEEEEECHHHhhch---------HHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCccccCCeecCCHHHHHH
Confidence 6789999999988752 6789999999999999999999999998773 444422 33322 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEeceec--c-----cc---ch-hHHH-HHHHHHHhCCCEEEEeCC----CCC-c
Q 019877 161 IGMLATVMNAIFLQATMESIGIPTRVQTAFRM--S-----EV---AE-PYIR-RRAVRHLEKGRVVIFAAG----TGN-P 223 (334)
Q Consensus 161 ~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~--~-----~~---~~-~~i~-~~i~~lL~~G~IPVi~g~----~g~-~ 223 (334)
+.++...+|..|+.. |.++|++++++++--+ . +. ++ ..++ +.+..+|+.|.|||++|+ .|. .
T Consensus 119 v~mv~~~vn~~lv~~-L~~~G~~Avglsgg~~~a~~~~~~d~g~vG~I~~v~~~~I~~lL~~G~IPVi~~~g~~~~G~~~ 197 (464)
T 4ab7_A 119 VRKCFLEQNLKLVTA-LEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQML 197 (464)
T ss_dssp HHHHHHHHHHHHHHH-HHHTTCCEEEECSSSEEEEESCTTTTBSBEEEEEECCHHHHHHHHTTCEEEEESEEECTTCBEE
T ss_pred HHHHHHHHHHHHHHH-HHhCCCCeEEECCCcEEEEecCccccCCcCcccccCHHHHHHHHHCCcEEEEcCCcCCCCCCEE
Confidence 555555788887764 9999999998875211 1 11 11 1233 446789999999999983 333 3
Q ss_pred ccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHH-HhhC-------CCCcchHHHHHHHHhC--
Q 019877 224 FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE-VTSK-------DLSVMDMTAITLCQEN-- 293 (334)
Q Consensus 224 ~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e-~~~~-------g~~v~k~~Aa~~a~~~-- 293 (334)
++++|++|+++|.+|+||+|+++|||||||++ |++++|++|++.| +.++ |.|.+|++|++.|.+.
T Consensus 198 ni~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa~aa~~~v~ 272 (464)
T 4ab7_A 198 NVNADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLP 272 (464)
T ss_dssp ECCHHHHHHHHHHHHCCSEEEEEESSCSEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHHHHHHTTSC
T ss_pred EecHHHHHHHHHHHcCCCEEEEEecccccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcc
Confidence 58999999999999999999999999999986 4689999999875 3322 2367899977777664
Q ss_pred -CCcEEEEcCCChhH-HHHHHcCCCCceEEecC
Q 019877 294 -NIPVVVFNLNQPGN-IAKAIQGERVGTLIGGT 324 (334)
Q Consensus 294 -Gi~V~I~ng~~~~~-l~~~l~g~~~GT~I~~~ 324 (334)
|.+++|++ ++. +.++++++++||+|.+.
T Consensus 273 ~g~~v~I~~---~~~ll~eLft~~g~GT~I~~~ 302 (464)
T 4ab7_A 273 RSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (464)
T ss_dssp TTCEEEEEE---STTHHHHTTSSSTTSEEEECC
T ss_pred cCcEEEEec---ChHHHHHHhcCCCCceEEecC
Confidence 77899998 444 46788899999999976
No 40
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=99.96 E-value=2.3e-28 Score=243.68 Aligned_cols=211 Identities=19% Similarity=0.242 Sum_probs=159.6
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-ch-------HHHHHH-Hccc--CC-------
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GN-------IFRGAS-AAGN--SG------- 152 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg-G~-------~~~g~~-~~~~--~g------- 152 (334)
+++|.||||+++.+ .+.++++++.|.. .+.++|+|.++ |. +.+... .+.. .+
T Consensus 3 ~m~V~KFGGtSva~-------~e~i~~Va~iI~~---~~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~~~~~~~~ 72 (446)
T 3tvi_A 3 KIVVTKFGGSSLAD-------SNQFKKVKGIIDS---DANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNGIPFDDVF 72 (446)
T ss_dssp -CEEEEECGGGGSS-------HHHHHHHHHHHTT---CTTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred ccEEEEeCccccCC-------HHHHHHHHHHHHh---cCCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcCccHHHHH
Confidence 47999999999986 6789888888864 46788888888 73 333321 1110 00
Q ss_pred ---------------C----------------CCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEeceecccc--ch--
Q 019877 153 ---------------L----------------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV--AE-- 197 (334)
Q Consensus 153 ---------------l----------------~~~~~d~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~~~--~~-- 197 (334)
+ ..+..|++.+.||++++.|++.+|. +.++++++..-. +.
T Consensus 73 ~~i~~~~~~i~~~L~~~~~~~~~l~~~~~~l~~~~~~D~lls~GE~lS~~lla~~l~-----a~~~~~~~~~~~~~~~~~ 147 (446)
T 3tvi_A 73 KLISQRYTEIVSELNIDMDIAYYLEKVKKNIENGASSDYAASRGEYLNGVILAKYLN-----AEFIDAAEVIFFDKSGCF 147 (446)
T ss_dssp HHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-----CEECCGGGTCBBCC--CB
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCccHHHHHHhHHHHHHHHHHHHhc-----ceeECHHHheeeCCCCce
Confidence 0 0134567778899999999998864 555555443211 11
Q ss_pred --hHHHHHHHHHHhCCCEEEEeCCCC---------CcccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCccc
Q 019877 198 --PYIRRRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 266 (334)
Q Consensus 198 --~~i~~~i~~lL~~G~IPVi~g~~g---------~~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI 266 (334)
.+..+.+.++|+.|.|||++||.| +.++++|++|+++|.+++||+|++||||||||++||+.+|+|++|
T Consensus 148 ~~~~~~~~l~~~l~~~~v~Vv~Gf~g~~~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i 227 (446)
T 3tvi_A 148 DEKKSYEKIKEKVLSCNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTI 227 (446)
T ss_dssp CHHHHHHHHHHHTTTCSSEECCCSEEECTTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBC
T ss_pred ehHhhHHHHHHHHhcCCeEEeeCceecCCCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEc
Confidence 122345678899999999988622 345789999999999999999999999999999999999999999
Q ss_pred ccccHHHHhhC---CCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHcCCCCceEEecCC
Q 019877 267 DTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 325 (334)
Q Consensus 267 ~~Is~~e~~~~---g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~~~ 325 (334)
++++|+|+.++ |.+++|++|+++|.++|||++|.|+++|+ ..||+|.+..
T Consensus 228 ~~is~~e~~ela~~Ga~vl~~~a~~~a~~~~ipi~i~~~~~p~---------~~GT~i~~~~ 280 (446)
T 3tvi_A 228 SKISYKELRELSYMGATVLHEEAIFPVKDSGIPINIKNTNKPS---------DPGTLILSDT 280 (446)
T ss_dssp SEEEHHHHHHTTTC----CCSTTTHHHHHSSCCEEEEETTBTT---------SCCEEEECTT
T ss_pred ceeCHHHHHHHHhCCCCcchHHHHHHHHHcCCeEEEecCCCCC---------CCCEEEecCC
Confidence 99999999875 77899999999999999999999998885 5799998754
No 41
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.96 E-value=3.6e-28 Score=242.79 Aligned_cols=220 Identities=18% Similarity=0.213 Sum_probs=169.8
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCC---CChHH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLD---RSSAD 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~---~~~~d 159 (334)
..+++|||+||+++++ .+++++++|+.++..|.++|||||||++++.. ..++.. |++ ....+
T Consensus 57 ~~~~iViK~GGsv~~~---------~l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~~G~RvTd~~~l~ 127 (460)
T 3s6g_A 57 QERFAVIKVGGAVIQD---------DLPGLASALAFLQTVGLTPVVVHGGGPQLDAALEAADIPTERVDGLRVTRDEAMP 127 (460)
T ss_dssp GGGSEEEEECHHHHHH---------CHHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHHHSCCCCCCSSSCCBCTTTHH
T ss_pred CCCEEEEEEChHHhhh---------HHHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCCccCCCHHHHH
Confidence 4689999999997764 26899999999999999999999999998773 344422 332 23445
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeEEeceec--c-----cc---ch-hHHH-HHHHHHHhCCCEEEEeCC----CC-C
Q 019877 160 YIGMLATVMNAIFLQATMESIGIPTRVQTAFRM--S-----EV---AE-PYIR-RRAVRHLEKGRVVIFAAG----TG-N 222 (334)
Q Consensus 160 ~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~--~-----~~---~~-~~i~-~~i~~lL~~G~IPVi~g~----~g-~ 222 (334)
.+.+....+|..|++ +|.+.|++++++++..+ . +. ++ ..++ +.+..+|++|.|||+++. .| .
T Consensus 128 vv~~~lg~vn~~lv~-aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~p~g~~~~G~~ 206 (460)
T 3s6g_A 128 IIRDTLTQANLALVD-AIRDAGGRAAAVPRGVFEADIVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACLGETPDGTL 206 (460)
T ss_dssp HHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSEEEEESCTTTTBSEEEEEEECCHHHHHHHHTTCEEEEECEEECTTCCE
T ss_pred HHHHHHHHHHHHHHH-HHHhCCCCceEEecCeEEEEEecCcccCccCcceEEcHHHHHHHHHCCcEEEEECceECCCCcE
Confidence 555544488988888 59999999998876211 1 11 11 1233 446789999999999963 23 3
Q ss_pred cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHH-HHhhC-------CCCcchHHHHHHHHhCC
Q 019877 223 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ-EVTSK-------DLSVMDMTAITLCQENN 294 (334)
Q Consensus 223 ~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~-e~~~~-------g~~v~k~~Aa~~a~~~G 294 (334)
.++++|++|+++|.+|+||+|+++|||||||++ ++++|++|+.. |+.++ |.|.+|++|+..|.+.+
T Consensus 207 ~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv 280 (460)
T 3s6g_A 207 VNINADVAVRALVHALQPYKVVFLTGTGGLLDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIKRLLDDL 280 (460)
T ss_dssp EEECHHHHHHHHHHHHCCSEEEEECSSCSCBCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHTS
T ss_pred EecCHHHHHHHHHHHcCCCEEEEEeCCccccCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCC
Confidence 458999999999999999999999999999985 37899999985 54432 34678999999988844
Q ss_pred CcEEEEcCCChhHHH-HHHcCCCCceEEecC
Q 019877 295 IPVVVFNLNQPGNIA-KAIQGERVGTLIGGT 324 (334)
Q Consensus 295 i~V~I~ng~~~~~l~-~~l~g~~~GT~I~~~ 324 (334)
.+++|++++.|+.|. +++.++++||+|.+.
T Consensus 281 ~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 311 (460)
T 3s6g_A 281 PLSSSVSITRPSELARELFTHAGSGTLIRRG 311 (460)
T ss_dssp CTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred CcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence 469999999999985 788899999999976
No 42
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.96 E-value=2.6e-28 Score=231.92 Aligned_cols=229 Identities=16% Similarity=0.213 Sum_probs=162.8
Q ss_pred CCCeEEEEeCCccccCC-CCCC--CCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcc--cCCCCCChHHH--
Q 019877 89 KWQRVLLKVSGEALAGD-HTQN--IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAG--NSGLDRSSADY-- 160 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~-~~~~--l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~--~~gl~~~~~d~-- 160 (334)
+.|++||+|||++|... +..+ ...+.++..|++|+.+.+.|+++||+||+|++.-.. .... ....+..+.|+
T Consensus 4 ~~~~ivvalgGnal~~~g~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGPQVG~i~~~~~~~~~~~~~~pld~~~ 83 (317)
T 3kzf_A 4 AGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCG 83 (317)
T ss_dssp CCCEEEEECCSTTTC--CCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTTSSSCCCCHHHHH
T ss_pred CCCEEEEEcChhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCccccC
Confidence 45799999999999653 2112 335578899999999999999999999998875211 1111 11233445554
Q ss_pred ---HHHHHHHHHHHHHHHHHHHcCCCeeEEeceecc-----c---------------------cc-h------------h
Q 019877 161 ---IGMLATVMNAIFLQATMESIGIPTRVQTAFRMS-----E---------------------VA-E------------P 198 (334)
Q Consensus 161 ---~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~~-----~---------------------~~-~------------~ 198 (334)
.++++.+++..|-. .|...|++....+..+.. | .. + .
T Consensus 84 A~sqG~igy~l~~al~~-~l~~~g~~~~v~t~itq~~Vd~~Dpaf~~PtKpiG~~y~~~ea~~~~~~~~~~~~~ed~grg 162 (317)
T 3kzf_A 84 AMSQGFIGYMMSQAMDN-VFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRG 162 (317)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEECC--------------------------C
T ss_pred chhhHHHHHHHHHHHHH-HHHhcCCCCceeEEEEEEEECCCCccccCCCCCcCCCCCHHHHHHHHHhccCCeEeecCCCC
Confidence 45566666544444 478889876544443210 0 00 0 0
Q ss_pred H------------HH-HHHHHHHhCCCEEEEeCCCCC-------------cccChHHHHHHHHHHcCCcEEEEeecCCcc
Q 019877 199 Y------------IR-RRAVRHLEKGRVVIFAAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGV 252 (334)
Q Consensus 199 ~------------i~-~~i~~lL~~G~IPVi~g~~g~-------------~~~~sD~lAa~lA~~l~Ad~LiilTDVdGV 252 (334)
| ++ +.+..+|++|+|||++|++|+ .++|+|++|+++|.+|+||+|+|+||||||
T Consensus 163 ~RrvV~sP~P~~iVe~~~I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGV 242 (317)
T 3kzf_A 163 WRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNA 242 (317)
T ss_dssp CCCEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSC
T ss_pred eeeecCCCCCcceECHHHHHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCee
Confidence 0 12 345778999999776644332 257899999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccccHHHHhhC--------CCCcchHHHHHHHHhC-CCcEEEEcCCChhHHHHHHcCCCCceEEec
Q 019877 253 YDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIGG 323 (334)
Q Consensus 253 yt~dP~~~p~aklI~~Is~~e~~~~--------g~~v~k~~Aa~~a~~~-Gi~V~I~ng~~~~~l~~~l~g~~~GT~I~~ 323 (334)
|+ ||+ +|++++|++++++|+.++ |.|.+|++||..+.+. +.+++|+|+ +.+.++|+|+ .||+|.+
T Consensus 243 y~-dp~-~p~a~~I~~it~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~---~~l~~~l~G~-~GT~I~~ 316 (317)
T 3kzf_A 243 CI-NYK-KPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNGK-CGTRIIK 316 (317)
T ss_dssp EE-SSS-CSSCEECCEEEHHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCG---GGHHHHHTTS-SSEEEEC
T ss_pred eC-CCC-CCCCeECcCcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcch---HHHHHHHCCC-CCeEEec
Confidence 99 898 699999999999988653 4578899999988665 457999995 4577899998 8999986
Q ss_pred C
Q 019877 324 T 324 (334)
Q Consensus 324 ~ 324 (334)
+
T Consensus 317 d 317 (317)
T 3kzf_A 317 D 317 (317)
T ss_dssp C
T ss_pred C
Confidence 3
No 43
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.94 E-value=7.1e-28 Score=240.90 Aligned_cols=220 Identities=18% Similarity=0.238 Sum_probs=166.4
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCchHHHHH-HHcccC-----CCCCCh---HH
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS-----GLDRSS---AD 159 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGgG~~~~g~-~~~~~~-----gl~~~~---~d 159 (334)
..+++|||+||++++++ +++++++|+.+++.|.++|||||||++++.. ..++.. |++.+. .+
T Consensus 60 ~~~~iViK~GG~v~~~~---------l~~va~dI~~l~~~G~~~VvVHGgg~~i~~~l~~~gi~~~f~~G~RvTd~~~l~ 130 (467)
T 3s6k_A 60 AKRFAVVKVGGAVLRDD---------LEALTSSLSFLQEVGLTPIVLHGAGPQLDAELSAAGIEKQTVNGLRVTSPHALA 130 (467)
T ss_dssp STTSCCCCCCHHHHTTC---------CHHHHHHHHHHHTTSCCCCCCCCCCHHHHHHHHTTSCCCCCCSSSCCBCHHHHH
T ss_pred CCcEEEEEEChHHhhhH---------HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCCccCCCHHHHH
Confidence 46899999999976642 5888999999999999999999999998763 333321 233222 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeEEeceec--c-----cc---ch-hHHH-HHHHHHHhCCCEEEEeC--C--CC-C
Q 019877 160 YIGMLATVMNAIFLQATMESIGIPTRVQTAFRM--S-----EV---AE-PYIR-RRAVRHLEKGRVVIFAA--G--TG-N 222 (334)
Q Consensus 160 ~~~~la~~~n~~Lv~~~L~~~Gi~a~~l~~~~~--~-----~~---~~-~~i~-~~i~~lL~~G~IPVi~g--~--~g-~ 222 (334)
.+.+....+|..|++ +|.++|++++++++..+ . +. ++ ..++ +.+..+|++|.|||+++ + .| .
T Consensus 131 vv~~~~g~vn~~Lv~-aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~pvg~~~~G~~ 209 (467)
T 3s6k_A 131 IVRKVFQASNLKLVE-ALQQNGARATSITGGVFEAEYLNRDTYGLVGEVKAVNLAPIEASLQAGSIPVITSLGETPSGQI 209 (467)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHTCCBCCCCSSSBCCCBSCSSSSBSBBCCCCBCCHHHHTHHHHTCBCCCCSCCCCSSSCC
T ss_pred HHHHHHHHHHHHHHH-HHHhCCCCceEEcCccEEEEeccCcccCccceEEEEcHHHHHHHHHCCCEEEEECceECCCCcE
Confidence 344444578888888 59999999988776221 1 11 11 1233 44678999999999985 2 23 3
Q ss_pred cccChHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHH-HHhhC-------CCCcchHHHHHHHHhCC
Q 019877 223 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ-EVTSK-------DLSVMDMTAITLCQENN 294 (334)
Q Consensus 223 ~~~~sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~-e~~~~-------g~~v~k~~Aa~~a~~~G 294 (334)
.++++|++|+++|.+|+||+|+|+|||||||++| +++|++++.. |+.++ |.|.+|++|+..+.+.+
T Consensus 210 ~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~~------~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv 283 (467)
T 3s6k_A 210 LNVNADFAANELVQELQPYKIIFLTGTGGLLDAE------GKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIKDLLDRL 283 (467)
T ss_dssp CBCCHHHHHHHHHHHHCCSSCCCCCSSCSCCCSS------CCCCCCCCTTTTTHHHHTSSSCCSHHHHHHHHHHHHHTTS
T ss_pred EecCHHHHHHHHHHhcCCCEEEEEecccceeCCC------CCCccccChHHHHHHHHhcCCCCCchHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999999853 6789998874 43322 44678999999988854
Q ss_pred CcEEEEcCCChhHHH-HHHcCCCCceEEecC
Q 019877 295 IPVVVFNLNQPGNIA-KAIQGERVGTLIGGT 324 (334)
Q Consensus 295 i~V~I~ng~~~~~l~-~~l~g~~~GT~I~~~ 324 (334)
.+++|++++.|+.+. +++.++++||+|.+.
T Consensus 284 ~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 314 (467)
T 3s6k_A 284 PLESSVSITRPADLAKELFTHKGSGTLVRRG 314 (467)
T ss_dssp CSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred CcEEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence 469999999999985 678899999999876
No 44
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=55.27 E-value=25 Score=29.21 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=34.4
Q ss_pred EEeecCCccccCCCCC-CCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHc
Q 019877 244 LKATNVDGVYDDNPRR-NPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 244 iilTDVdGVyt~dP~~-~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
.+++|+||++++.-.. .++.+.+..+... +..+...+.+.|+++.|+.++ .....++.
T Consensus 11 liv~D~DGtL~d~~~~~~~~g~~~~~f~~~----------D~~~L~~Lk~~Gi~~~I~Tg~--~~~~~~l~ 69 (168)
T 3ewi_A 11 LLVCNIDGCLTNGHIYVSGDQKEIISYDVK----------DAIGISLLKKSGIEVRLISER--ACSKQTLS 69 (168)
T ss_dssp EEEEECCCCCSCSCCBCCSSCCCEEEEEHH----------HHHHHHHHHHTTCEEEEECSS--CCCHHHHH
T ss_pred EEEEeCccceECCcEEEcCCCCEEEEEecC----------cHHHHHHHHHCCCEEEEEeCc--HHHHHHHH
Confidence 5789999999864321 2333344444332 234566677778887777776 33444454
No 45
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=51.64 E-value=48 Score=28.02 Aligned_cols=68 Identities=18% Similarity=0.071 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCc
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 241 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad 241 (334)
|..+++.+|.+.|+........ .| +...+.+.+.++++...+.|.+|+. ....-|.+...+|.+++.+
T Consensus 24 N~~~l~~~L~~~G~~v~~~~iv--~D-d~~~I~~~l~~a~~~~DlVittGG~--g~~~~D~T~ea~a~~~~~~ 91 (172)
T 3kbq_A 24 NAAFIGNFLTYHGYQVRRGFVV--MD-DLDEIGWAFRVALEVSDLVVSSGGL--GPTFDDMTVEGFAKCIGQD 91 (172)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEE--CS-CHHHHHHHHHHHHHHCSEEEEESCC--SSSTTCCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHCCCEEEEEEEe--CC-CHHHHHHHHHHHHhcCCEEEEcCCC--cCCcccchHHHHHHHcCCC
Confidence 4455666788999887543221 11 1233445566667667888887753 4567899999999999965
No 46
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=43.38 E-value=32 Score=27.35 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=31.5
Q ss_pred EEeecCCccccCCCCC-CCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHc
Q 019877 244 LKATNVDGVYDDNPRR-NPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 244 iilTDVdGVyt~dP~~-~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
.++.|.||.+...... .+..+.++.+... ..++...+.+.|+++.|++++....+..++.
T Consensus 11 ~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~----------~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~ 71 (162)
T 2p9j_A 11 LLIMDIDGVLTDGKLYYTEHGETIKVFNVL----------DGIGIKLLQKMGITLAVISGRDSAPLITRLK 71 (162)
T ss_dssp EEEECCTTTTSCSEEEEETTEEEEEEEEHH----------HHHHHHHHHTTTCEEEEEESCCCHHHHHHHH
T ss_pred EEEEecCcceECCceeecCCCceeeeeccc----------HHHHHHHHHHCCCEEEEEeCCCcHHHHHHHH
Confidence 4688999998753211 1112222333221 1245555566677777776665555555554
No 47
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*
Probab=41.77 E-value=58 Score=28.40 Aligned_cols=51 Identities=14% Similarity=0.018 Sum_probs=36.6
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHc
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
++++|.||-+..+- + +++.. -.++...+.+.|+++.|+.|+....+.+.|.
T Consensus 6 li~~DlDGTLl~~~------~---~i~~~----------~~~~l~~l~~~g~~~~iaTGR~~~~~~~~l~ 56 (246)
T 3f9r_A 6 LLLFDVDGTLTPPR------L---CQTDE----------MRALIKRARGAGFCVGTVGGSDFAKQVEQLG 56 (246)
T ss_dssp EEEECSBTTTBSTT------S---CCCHH----------HHHHHHHHHHTTCEEEEECSSCHHHHHHHHC
T ss_pred EEEEeCcCCcCCCC------C---ccCHH----------HHHHHHHHHHCCCEEEEECCCCHHHHHHHhh
Confidence 57899999776431 1 23321 1356777888999999999999888877765
No 48
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=41.66 E-value=24 Score=29.00 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=34.0
Q ss_pred EEeecCCccccCCCC-CCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHc
Q 019877 244 LKATNVDGVYDDNPR-RNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 244 iilTDVdGVyt~dP~-~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
.++.|+||.+.+... ..++.+.+.++... ..++...+.+.|+++.|+.++....+..++.
T Consensus 10 ~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~----------~~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~~ 70 (180)
T 1k1e_A 10 FVITDVDGVLTDGQLHYDANGEAIKSFHVR----------DGLGIKMLMDADIQVAVLSGRDSPILRRRIA 70 (180)
T ss_dssp EEEEECTTTTSCSEEEEETTEEEEEEEEHH----------HHHHHHHHHHTTCEEEEEESCCCHHHHHHHH
T ss_pred EEEEeCCCCcCCCCeeeccCcceeeeeccc----------hHHHHHHHHHCCCeEEEEeCCCcHHHHHHHH
Confidence 467899999875311 11122333334322 2345566667788877777776655555444
No 49
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=36.30 E-value=74 Score=23.75 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=30.5
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg 138 (334)
|.++.-+-|++ .+ ....+..+.+.+..|++.|++++|++++
T Consensus 3 k~i~~D~DgtL-~~------~~~~~~~~~~~l~~L~~~G~~~~i~S~~ 43 (137)
T 2pr7_A 3 RGLIVDYAGVL-DG------TDEDQRRWRNLLAAAKKNGVGTVILSND 43 (137)
T ss_dssp CEEEECSTTTT-SS------CHHHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred cEEEEecccee-cC------CCccCccHHHHHHHHHHCCCEEEEEeCC
Confidence 56777777765 22 1345666778888899999999999975
No 50
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=34.04 E-value=66 Score=27.63 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=41.2
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEC-CchHHHH-HHHcccCCCC
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG-GGNIFRG-ASAAGNSGLD 154 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhG-gG~~~~g-~~~~~~~gl~ 154 (334)
+.|.|++=+-|+++.. ...+....+.|.++++.|+++++++| .|..... ...+...++.
T Consensus 5 ~~kli~~DlDGTLl~~-------~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~ 65 (266)
T 3pdw_A 5 TYKGYLIDLDGTMYNG-------TEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIP 65 (266)
T ss_dssp CCSEEEEECSSSTTCH-------HHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEeCcCceEeC-------CEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 4678999999998764 33566777889999999999999998 3443333 2333334554
No 51
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=31.30 E-value=64 Score=28.38 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHH
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 312 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l 312 (334)
++++|+||-+-.+ .+.++.-+ .++...+.+.|+.+.|+.|+....+..++
T Consensus 7 li~~DlDGTLl~~------~~~i~~~~-------------~~aL~~l~~~Gi~vviaTGR~~~~~~~~~ 56 (282)
T 1rkq_A 7 LIAIDMDGTLLLP------DHTISPAV-------------KNAIAAARARGVNVVLTTGRPYAGVHNYL 56 (282)
T ss_dssp EEEECCCCCCSCT------TSCCCHHH-------------HHHHHHHHHTTCEEEEECSSCGGGTHHHH
T ss_pred EEEEeCCCCCCCC------CCcCCHHH-------------HHHHHHHHHCCCEEEEEcCCCHHHHHHHH
No 52
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=30.91 E-value=3.1e+02 Score=25.00 Aligned_cols=38 Identities=3% Similarity=0.109 Sum_probs=23.6
Q ss_pred CeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q 019877 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV 135 (334)
Q Consensus 91 k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlV 135 (334)
|+|.|=+||.+-..+ =.+..-...++.|.+.|++++.|
T Consensus 4 kkv~vl~GG~S~E~e-------vSl~Sa~~v~~aL~~~gy~v~~i 41 (357)
T 4fu0_A 4 KKIAVIFGGNSTEYE-------VSLQSASAVFENINTNKFDIIPI 41 (357)
T ss_dssp EEEEEEEECSSTTHH-------HHHHHHHHHHHHSCTTTEEEEEE
T ss_pred CEEEEEECCCccchH-------HHHHHHHHHHHHHhHhCCEEEEE
Confidence 566666999865431 12333334456777889998877
No 53
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=30.33 E-value=58 Score=26.82 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=29.2
Q ss_pred EeecCCccccCCCC-CCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHc
Q 019877 245 KATNVDGVYDDNPR-RNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 245 ilTDVdGVyt~dP~-~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
++.|+||++.+.-. ..++.+.+..+... +..+...+.+.|+++.|++++....+..++.
T Consensus 29 vifD~DGTL~~~~~~~~~~~~~~~~~~~~----------d~~~l~~L~~~g~~v~ivT~~~~~~~~~~l~ 88 (188)
T 2r8e_A 29 LILDVDGVLSDGLIYMGNNGEELKAFNVR----------DGYGIRCALTSDIEVAIITGRKAKLVEDRCA 88 (188)
T ss_dssp EEECCCCCCBCSEEEEETTSCEEEEEEHH----------HHHHHHHHHTTTCEEEEECSSCCHHHHHHHH
T ss_pred EEEeCCCCcCCCCEEecCCCcEEEEeecc----------cHHHHHHHHHCCCeEEEEeCCChHHHHHHHH
Confidence 56799999875210 11112222222221 1124445556677776666655554444443
No 54
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=29.34 E-value=1.1e+02 Score=26.82 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=35.0
Q ss_pred EEEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHc
Q 019877 243 VLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 243 LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
-++++|.||=+-.+. ..+..- -.++.+.+.+.|+++.|+.|+....+..++.
T Consensus 10 ~li~~DlDGTLl~~~------~~~~~~-------------~~~~l~~l~~~G~~~~iaTGR~~~~~~~~~~ 61 (275)
T 1xvi_A 10 LLVFSDLDGTLLDSH------SYDWQP-------------AAPWLTRLREANVPVILCSSKTSAEMLYLQK 61 (275)
T ss_dssp EEEEEECTTTTSCSS------CCSCCT-------------THHHHHHHHHTTCCEEEECSSCHHHHHHHHH
T ss_pred eEEEEeCCCCCCCCC------CcCCHH-------------HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Confidence 467899999776421 111110 1466677788999999999998877766543
No 55
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=28.26 E-value=67 Score=27.61 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred EEeecCCccccCCCCCCCCCcccc--------cccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHc
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLD--------TLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~--------~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
++++|.|| ++++ .++.... ++...+.+.| ++.|+.|+.+..+..++.
T Consensus 3 li~~DlDG------------TLl~~~~~~~~~~i~~~~~----------~al~~l~~~g-~v~iaTGR~~~~~~~~~~ 57 (239)
T 1u02_A 3 LIFLDYDG------------TLVPIIMNPEESYADAGLL----------SLISDLKERF-DTYIVTGRSPEEISRFLP 57 (239)
T ss_dssp EEEEECBT------------TTBCCCSCGGGCCCCHHHH----------HHHHHHHHHS-EEEEECSSCHHHHHHHSC
T ss_pred EEEEecCC------------CCcCCCCCcccCCCCHHHH----------HHHHHHhcCC-CEEEEeCCCHHHHHHHhc
No 56
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=26.47 E-value=1.8e+02 Score=24.09 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhC--CCEEEEeCCCCCcccChHHHHHHHHHHcC
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK--GRVVIFAAGTGNPFFTTDTAAALRCAEIN 239 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~--G~IPVi~g~~g~~~~~sD~lAa~lA~~l~ 239 (334)
|..+++.+|.+.|......... .| +...+.+.+.++++. -.+.|++|+. ....-|.+...++..++
T Consensus 29 n~~~l~~~L~~~G~~v~~~~iv--~D-d~~~i~~~l~~a~~~~~~DlVittGG~--g~~~~D~t~ea~~~~~~ 96 (172)
T 1mkz_A 29 SGHYLRDSAQEAGHHVVDKAIV--KE-NRYAIRAQVSAWIASDDVQVVLITGGT--GLTEGDQAPEALLPLFD 96 (172)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEE--CS-CHHHHHHHHHHHHHSSSCCEEEEESCC--SSSTTCCHHHHHGGGCS
T ss_pred cHHHHHHHHHHCCCeEeEEEEe--CC-CHHHHHHHHHHHHhcCCCCEEEeCCCC--CCCCCCCHHHHHHHHhc
Confidence 4455666788899876533211 11 123344556677764 5777877754 34567888888887765
No 57
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=26.22 E-value=1e+02 Score=29.47 Aligned_cols=80 Identities=9% Similarity=0.032 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHcCCcEEEEeecCCccccCCCCCCCCCcccccccHHHHhhCCCC----cchH-HHHHHHHhCCCcEEEEc
Q 019877 227 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLS----VMDM-TAITLCQENNIPVVVFN 301 (334)
Q Consensus 227 sD~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~----v~k~-~Aa~~a~~~Gi~V~I~n 301 (334)
+..+|..++...+...=.+..||||++++.- ...++.....+. -|.. ...+ +..+.+.+.|+++.|++
T Consensus 207 a~~~~~~~~~l~~~~iK~lv~DvDnTL~~G~-l~~dG~~~~~~~------dg~g~g~~ypgv~e~L~~Lk~~Gi~laI~S 279 (387)
T 3nvb_A 207 SSRTIDIIAAIQGKFKKCLILDLDNTIWGGV-VGDDGWENIQVG------HGLGIGKAFTEFQEWVKKLKNRGIIIAVCS 279 (387)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCBTTTBBSC-HHHHCGGGSBCS------SSSSTHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCCCCCe-ecCCCceeEEec------cCccccccCHHHHHHHHHHHHCCCEEEEEc
Confidence 4555555555555544456789999998521 000111110110 0111 1122 34566778899988888
Q ss_pred CCChhHHHHHHc
Q 019877 302 LNQPGNIAKAIQ 313 (334)
Q Consensus 302 g~~~~~l~~~l~ 313 (334)
++....+...++
T Consensus 280 nn~~~~v~~~l~ 291 (387)
T 3nvb_A 280 KNNEGKAKEPFE 291 (387)
T ss_dssp ESCHHHHHHHHH
T ss_pred CCCHHHHHHHHh
Confidence 888777777764
No 58
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=26.08 E-value=97 Score=27.17 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=34.8
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHHc
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 313 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~ 313 (334)
.+++|.||-+-++- .. ++.. -.++...+.+.|+++.++.|+....+..++.
T Consensus 6 li~~DlDGTLl~~~------~~---i~~~----------~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~ 56 (288)
T 1nrw_A 6 LIAIDLDGTLLNSK------HQ---VSLE----------NENALRQAQRDGIEVVVSTGRAHFDVMSIFE 56 (288)
T ss_dssp EEEEECCCCCSCTT------SC---CCHH----------HHHHHHHHHHTTCEEEEECSSCHHHHHHHHG
T ss_pred EEEEeCCCCCCCCC------Cc---cCHH----------HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 46889999886431 11 2211 1355666778899999999998887776664
No 59
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=26.03 E-value=1.4e+02 Score=25.03 Aligned_cols=30 Identities=3% Similarity=0.138 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCcEEEEcCCChhHHHHHHcC
Q 019877 285 TAITLCQENNIPVVVFNLNQPGNIAKAIQG 314 (334)
Q Consensus 285 ~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l~g 314 (334)
.+...+.+.|+++.|+.+.....+..+++.
T Consensus 59 ~~l~~L~~~G~~~~ivT~~~~~~~~~~l~~ 88 (195)
T 3n07_A 59 YGVKALMNAGIEIAIITGRRSQIVENRMKA 88 (195)
T ss_dssp HHHHHHHHTTCEEEEECSSCCHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEECcCHHHHHHHHHH
Confidence 455666777888777777666655555543
No 60
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=25.92 E-value=1e+02 Score=27.57 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=0.0
Q ss_pred EEeecCCccccCC-CCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHH
Q 019877 244 LKATNVDGVYDDN-PRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 312 (334)
Q Consensus 244 iilTDVdGVyt~d-P~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l 312 (334)
++++|.||-+-.+ -+ +++.... ++...+.+.|+++.|+.|+....+..++
T Consensus 29 li~~DlDGTLl~~~~~---------~is~~~~----------~al~~l~~~Gi~v~iaTGR~~~~~~~~~ 79 (301)
T 2b30_A 29 LLLIDFDGTLFVDKDI---------KVPSENI----------DAIKEAIEKGYMVSICTGRSKVGILSAF 79 (301)
T ss_dssp EEEEETBTTTBCCTTT---------CSCHHHH----------HHHHHHHHHTCEEEEECSSCHHHHHHHH
T ss_pred EEEEECCCCCcCCCCC---------ccCHHHH----------HHHHHHHHCCCEEEEEcCCCHHHHHHHh
No 61
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=24.26 E-value=2e+02 Score=23.61 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHh--CCCEEEEeCCCCCcccChHHHHHHHHHHcC
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE--KGRVVIFAAGTGNPFFTTDTAAALRCAEIN 239 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~--~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~ 239 (334)
|..++..+|.+.|........ ..| +...+.+.+.+.++ .-.+.|++|+.+ ...-|.+...++..++
T Consensus 32 n~~~l~~~L~~~G~~v~~~~i--v~D-d~~~i~~~l~~~~~~~~~DlVittGG~g--~g~~D~t~ea~~~~~~ 99 (169)
T 1y5e_A 32 SGQLLHELLKEAGHKVTSYEI--VKD-DKESIQQAVLAGYHKEDVDVVLTNGGTG--ITKRDVTIEAVSALLD 99 (169)
T ss_dssp HHHHHHHHHHHHTCEEEEEEE--ECS-SHHHHHHHHHHHHTCTTCSEEEEECCCS--SSTTCCHHHHHHTTCS
T ss_pred hHHHHHHHHHHCCCeEeEEEE--eCC-CHHHHHHHHHHHHhcCCCCEEEEcCCCC--CCCCCCcHHHHHHHcC
Confidence 445566668888987653221 111 12344555667777 567888887543 4566777777776654
No 62
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=23.94 E-value=48 Score=28.54 Aligned_cols=50 Identities=8% Similarity=0.127 Sum_probs=32.2
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcC---CChhHHHHHHc
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL---NQPGNIAKAIQ 313 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng---~~~~~l~~~l~ 313 (334)
.++.|+||.+-++- +.++. -.+|.+.+.+.|+++.++.| +.+..+.+.+.
T Consensus 10 li~~DlDGTLl~~~------~~~~~--------------~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~ 62 (268)
T 3qgm_A 10 GYIIDIDGVIGKSV------TPIPE--------------GVEGVKKLKELGKKIIFVSNNSTRSRRILLERLR 62 (268)
T ss_dssp EEEEECBTTTEETT------EECHH--------------HHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHH
T ss_pred EEEEcCcCcEECCC------EeCcC--------------HHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHH
Confidence 46899999876421 22211 13677788889999988887 45555555443
No 63
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=23.71 E-value=74 Score=25.89 Aligned_cols=46 Identities=4% Similarity=-0.048 Sum_probs=31.4
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEC
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhG 137 (334)
++.+++=+-|+++.++.+ .+.. ......+.|.++++.|++++|++|
T Consensus 3 ~k~i~~DlDGTL~~~~~~-~i~~-~~~~~~~al~~l~~~G~~iii~Tg 48 (142)
T 2obb_A 3 AMTIAVDFDGTIVEHRYP-RIGE-EIPFAVETLKLLQQEKHRLILWSV 48 (142)
T ss_dssp CCEEEECCBTTTBCSCTT-SCCC-BCTTHHHHHHHHHHTTCEEEECCS
T ss_pred CeEEEEECcCCCCCCCCc-cccc-cCHHHHHHHHHHHHCCCEEEEEeC
Confidence 578889999998875311 1110 112345778888899999999986
No 64
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=23.61 E-value=2.7e+02 Score=26.66 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhCCCEEEEeCCCCCcccChHHHHHHHHHHcCCcEEEE
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLK 245 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~G~IPVi~g~~g~~~~~sD~lAa~lA~~l~Ad~Lii 245 (334)
|..++..+|.+.|.....+.. ..| +...+.+.+.+.++.-.+.|++|+ ...+.-|.+...++..++.+ +.|
T Consensus 209 N~~~L~~~l~~~G~~v~~~~i--v~D-d~~~i~~~l~~a~~~~DlVittGG--~s~g~~D~t~~al~~~lg~~-~~f 279 (419)
T 2fts_A 209 NRSTLLATIQEHGYPTINLGI--VGD-NPDDLLNALNEGISRADVIITSGG--VSMGEKDYLKQVLDIDLHAQ-IHF 279 (419)
T ss_dssp HHHHHHHHHHTTTCCEEEEEE--ECS-SHHHHHHHHHHHHHHCSEEEEESC--CSSSCCHHHHHHHHTTTCCE-EEE
T ss_pred chHHHHHHHHHCCCEEEEEee--cCC-CHHHHHHHHHHHHhcCCEEEEcCC--CcCCCcccHHHHHHHHcCCc-eEE
Confidence 445566678889988753321 111 122344556666666677787765 45577899999998888874 444
No 65
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=23.51 E-value=70 Score=27.44 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=33.2
Q ss_pred CCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC
Q 019877 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (334)
Q Consensus 89 ~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg 138 (334)
+.|.|++=+-|+++.++. + +....+.|+++++.|+++++++|.
T Consensus 7 ~~kli~~DlDGTLl~~~~---~----~~~~~~ai~~l~~~Gi~v~l~Tgr 49 (268)
T 3qgm_A 7 DKKGYIIDIDGVIGKSVT---P----IPEGVEGVKKLKELGKKIIFVSNN 49 (268)
T ss_dssp CCSEEEEECBTTTEETTE---E----CHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCEEEEcCcCcEECCCE---e----CcCHHHHHHHHHHcCCeEEEEeCc
Confidence 467899999999887542 2 233457788889999999999983
No 66
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=23.13 E-value=2.2e+02 Score=23.70 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCCeeEEeceeccccchhHHHHHHHHHHhC--CCEEEEeCCCCCcccChHHHHHHHHHHcC
Q 019877 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK--GRVVIFAAGTGNPFFTTDTAAALRCAEIN 239 (334)
Q Consensus 169 n~~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~i~~lL~~--G~IPVi~g~~g~~~~~sD~lAa~lA~~l~ 239 (334)
|..+++.+|.+.|........ ..| +...+.+.+.+.+++ -.+.|++|+. ..+.-|.+...++..++
T Consensus 41 n~~~L~~~l~~~G~~v~~~~i--v~D-d~~~I~~al~~a~~~~~~DlVittGG~--s~g~~D~t~eal~~~~~ 108 (178)
T 2pjk_A 41 SGDIIKQLLIENGHKIIGYSL--VPD-DKIKILKAFTDALSIDEVDVIISTGGT--GYSPTDITVETIRKLFD 108 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEE--ECS-CHHHHHHHHHHHHTCTTCCEEEEESCC--SSSTTCCHHHHHGGGCS
T ss_pred HHHHHHHHHHHCCCEEEEEEE--eCC-CHHHHHHHHHHHHhcCCCCEEEECCCC--CCCCCcchHHHHHHHhc
Confidence 445566678889987653221 111 123345556677776 5787877653 44667888888887765
No 67
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=22.97 E-value=1.3e+02 Score=25.33 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEcCCChhHHHHHH
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 312 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~ng~~~~~l~~~l 312 (334)
++++|.||-+.++ ...+..-+. ++...+.+.|+++.++.|+.+..+.+++
T Consensus 5 li~~DlDGTLl~~------~~~i~~~~~-------------~al~~l~~~G~~v~i~TGR~~~~~~~~~ 54 (231)
T 1wr8_A 5 AISIDIDGTITYP------NRMIHEKAL-------------EAIRRAESLGIPIMLVTGNTVQFAEAAS 54 (231)
T ss_dssp EEEEESTTTTBCT------TSCBCHHHH-------------HHHHHHHHTTCCEEEECSSCHHHHHHHH
T ss_pred EEEEECCCCCCCC------CCcCCHHHH-------------HHHHHHHHCCCEEEEEcCCChhHHHHHH
No 68
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=21.37 E-value=53 Score=28.39 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=0.0
Q ss_pred EEeecCCccccCCCCCCCCCcccccccHHHHhhCCCCcchHHHHHHHHhCCCcEEEEc---CCChhHHHHHHcCCCC
Q 019877 244 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFN---LNQPGNIAKAIQGERV 317 (334)
Q Consensus 244 iilTDVdGVyt~dP~~~p~aklI~~Is~~e~~~~g~~v~k~~Aa~~a~~~Gi~V~I~n---g~~~~~l~~~l~g~~~ 317 (334)
.++.|+||.+-++-+..|.++ ++.+.+.+.|++++++. ++....+.+.+..-+.
T Consensus 7 li~~DlDGTLl~~~~~i~~~~--------------------eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~ 63 (264)
T 3epr_A 7 GYLIDLDGTIYKGKSRIPAGE--------------------RFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNV 63 (264)
T ss_dssp EEEECCBTTTEETTEECHHHH--------------------HHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTC
T ss_pred EEEEeCCCceEeCCEECcCHH--------------------HHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCC
No 69
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=20.89 E-value=1.5e+02 Score=25.79 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=32.3
Q ss_pred CCCCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEC
Q 019877 88 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (334)
Q Consensus 88 ~~~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhG 137 (334)
.+.|.++.=+-|+++..+ ..+.+.. .+.|.++++.|+++++++|
T Consensus 19 ~~~kli~~DlDGTLl~~~--~~i~~~~----~~al~~l~~~G~~v~iaTG 62 (285)
T 3pgv_A 19 GMYQVVASDLDGTLLSPD--HFLTPYA----KETLKLLTARGINFVFATG 62 (285)
T ss_dssp --CCEEEEECCCCCSCTT--SCCCHHH----HHHHHHHHTTTCEEEEECS
T ss_pred CcceEEEEeCcCCCCCCC--CcCCHHH----HHHHHHHHHCCCEEEEEcC
Confidence 366889999999988754 2455443 3667778889999999886
No 70
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*
Probab=20.17 E-value=1.3e+02 Score=26.10 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=31.4
Q ss_pred CCeEEEEeCCccccCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC
Q 019877 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (334)
Q Consensus 90 ~k~iVIKlGGS~lt~~~~~~l~~~~l~~ia~~Ia~l~~~G~~vVlVhGg 138 (334)
.|.++.=+-|+++..+. .++++. .+.|.++++.|+++++++|-
T Consensus 4 ~kli~~DlDGTLl~~~~--~i~~~~----~~~l~~l~~~g~~~~iaTGR 46 (246)
T 3f9r_A 4 RVLLLFDVDGTLTPPRL--CQTDEM----RALIKRARGAGFCVGTVGGS 46 (246)
T ss_dssp SEEEEECSBTTTBSTTS--CCCHHH----HHHHHHHHHTTCEEEEECSS
T ss_pred ceEEEEeCcCCcCCCCC--ccCHHH----HHHHHHHHHCCCEEEEECCC
Confidence 46778888899887542 465543 36688888899999999864
Done!