Query 019879
Match_columns 334
No_of_seqs 280 out of 1245
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 05:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 2E-102 3E-107 779.2 24.1 310 2-322 190-506 (506)
2 PF03141 Methyltransf_29: Puta 99.9 1.5E-26 3.4E-31 232.6 9.2 200 112-325 33-263 (506)
3 COG2226 UbiE Methylase involve 99.7 2.3E-17 4.9E-22 154.5 11.1 101 180-285 51-158 (238)
4 PF08241 Methyltransf_11: Meth 99.7 2.1E-17 4.6E-22 128.2 7.8 91 185-281 1-95 (95)
5 PF01209 Ubie_methyltran: ubiE 99.7 8.7E-17 1.9E-21 149.9 9.0 117 159-285 32-155 (233)
6 PLN02233 ubiquinone biosynthes 99.6 1.9E-15 4.1E-20 142.5 11.1 100 180-284 73-183 (261)
7 PRK10258 biotin biosynthesis p 99.6 1E-14 2.2E-19 135.4 13.1 105 173-284 35-141 (251)
8 PRK14103 trans-aconitate 2-met 99.6 5.5E-15 1.2E-19 138.0 10.6 107 171-283 20-126 (255)
9 PLN02396 hexaprenyldihydroxybe 99.6 7.6E-15 1.6E-19 143.0 10.1 100 180-285 131-237 (322)
10 PF13489 Methyltransf_23: Meth 99.6 3.5E-15 7.7E-20 126.9 5.5 97 179-286 21-118 (161)
11 PF12847 Methyltransf_18: Meth 99.5 2.1E-14 4.6E-19 116.1 7.5 101 181-284 2-112 (112)
12 PRK11036 putative S-adenosyl-L 99.5 5.2E-14 1.1E-18 131.6 10.4 105 172-283 37-149 (255)
13 PLN02244 tocopherol O-methyltr 99.5 7.4E-14 1.6E-18 136.5 11.9 99 179-283 117-223 (340)
14 PRK00107 gidB 16S rRNA methylt 99.5 4.3E-13 9.3E-18 121.3 15.9 152 160-322 27-186 (187)
15 PRK05785 hypothetical protein; 99.5 1.1E-13 2.5E-18 128.0 11.7 94 181-282 52-147 (226)
16 TIGR00477 tehB tellurite resis 99.5 9.8E-14 2.1E-18 125.3 9.9 97 180-282 30-132 (195)
17 PTZ00098 phosphoethanolamine N 99.5 1.2E-13 2.6E-18 130.5 10.4 109 172-284 44-157 (263)
18 KOG1540 Ubiquinone biosynthesi 99.5 2E-13 4.4E-18 128.4 11.0 122 176-301 96-233 (296)
19 PRK11207 tellurite resistance 99.5 1.6E-13 3.5E-18 124.1 9.9 97 180-281 30-132 (197)
20 TIGR02752 MenG_heptapren 2-hep 99.5 2.5E-13 5.4E-18 124.1 10.4 105 176-284 41-152 (231)
21 TIGR00452 methyltransferase, p 99.5 4E-13 8.6E-18 130.6 12.1 121 155-283 98-225 (314)
22 PRK15068 tRNA mo(5)U34 methylt 99.5 2.9E-13 6.3E-18 131.7 11.1 105 173-283 115-226 (322)
23 PRK12335 tellurite resistance 99.5 6.5E-13 1.4E-17 126.7 12.9 117 181-305 121-257 (287)
24 PF08242 Methyltransf_12: Meth 99.5 2.4E-14 5.2E-19 114.3 2.2 91 185-279 1-99 (99)
25 PRK01683 trans-aconitate 2-met 99.4 6.1E-13 1.3E-17 123.8 10.2 107 172-283 23-130 (258)
26 PRK15451 tRNA cmo(5)U34 methyl 99.4 3.2E-13 6.8E-18 126.1 8.3 103 181-284 57-165 (247)
27 COG2227 UbiG 2-polyprenyl-3-me 99.4 4.4E-13 9.6E-18 125.2 8.5 100 180-286 59-164 (243)
28 TIGR02072 BioC biotin biosynth 99.4 2.6E-12 5.6E-17 116.1 13.3 100 181-284 35-136 (240)
29 TIGR00740 methyltransferase, p 99.4 4.5E-13 9.7E-18 123.8 8.2 104 180-284 53-162 (239)
30 smart00138 MeTrc Methyltransfe 99.4 1.4E-12 3E-17 123.6 11.4 131 152-285 70-244 (264)
31 PLN02336 phosphoethanolamine N 99.4 9.5E-13 2.1E-17 133.2 10.1 100 179-284 265-370 (475)
32 PF13847 Methyltransf_31: Meth 99.4 9.2E-13 2E-17 113.4 8.1 102 180-285 3-112 (152)
33 PF13649 Methyltransf_25: Meth 99.4 1.8E-13 3.8E-18 110.2 3.1 93 184-277 1-101 (101)
34 PRK08317 hypothetical protein; 99.4 2.9E-12 6.2E-17 115.5 11.3 104 176-283 15-124 (241)
35 PF02353 CMAS: Mycolic acid cy 99.4 1.6E-12 3.5E-17 124.0 10.1 108 172-283 54-166 (273)
36 PRK11088 rrmA 23S rRNA methylt 99.4 3.2E-12 6.9E-17 120.8 11.8 104 180-294 85-193 (272)
37 PRK11705 cyclopropane fatty ac 99.4 2.5E-12 5.4E-17 128.0 11.0 108 172-283 159-267 (383)
38 smart00828 PKS_MT Methyltransf 99.4 1.7E-12 3.8E-17 118.0 8.8 98 182-284 1-105 (224)
39 PRK06202 hypothetical protein; 99.4 4.7E-12 1E-16 116.5 11.5 105 177-285 57-168 (232)
40 PRK11873 arsM arsenite S-adeno 99.4 2.5E-12 5.4E-17 120.9 9.6 99 181-284 78-184 (272)
41 PF07021 MetW: Methionine bios 99.3 3.7E-12 8.1E-17 115.7 9.0 101 173-284 8-110 (193)
42 PF05401 NodS: Nodulation prot 99.3 1.8E-11 3.9E-16 111.7 13.1 143 175-321 38-193 (201)
43 TIGR03587 Pse_Me-ase pseudamin 99.3 7.1E-12 1.5E-16 114.5 10.5 97 180-283 43-142 (204)
44 TIGR00537 hemK_rel_arch HemK-r 99.3 2.8E-11 6.1E-16 107.2 13.0 120 181-305 20-163 (179)
45 PF03848 TehB: Tellurite resis 99.3 8.8E-12 1.9E-16 113.5 9.7 101 176-282 26-132 (192)
46 TIGR00138 gidB 16S rRNA methyl 99.3 1.8E-11 3.9E-16 109.9 11.4 108 181-297 43-156 (181)
47 PLN02336 phosphoethanolamine N 99.3 8.2E-12 1.8E-16 126.4 9.7 109 172-284 29-143 (475)
48 COG4976 Predicted methyltransf 99.3 2E-12 4.3E-17 120.3 4.4 142 176-323 121-286 (287)
49 PRK00121 trmB tRNA (guanine-N( 99.3 1.3E-11 2.8E-16 112.2 9.2 124 180-304 40-178 (202)
50 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.3E-11 2.7E-16 121.4 9.4 98 181-283 114-215 (340)
51 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 3.5E-11 7.5E-16 108.0 11.5 103 178-284 37-144 (223)
52 KOG1270 Methyltransferases [Co 99.3 7.5E-12 1.6E-16 118.3 7.3 99 181-285 90-197 (282)
53 PRK06922 hypothetical protein; 99.3 8.8E-12 1.9E-16 130.7 8.4 104 180-284 418-538 (677)
54 TIGR00406 prmA ribosomal prote 99.3 3.5E-11 7.5E-16 115.1 11.8 115 181-304 160-280 (288)
55 COG2230 Cfa Cyclopropane fatty 99.3 3.3E-11 7.2E-16 115.5 10.8 108 172-283 64-176 (283)
56 TIGR02021 BchM-ChlM magnesium 99.2 4.7E-11 1E-15 108.8 11.0 101 180-284 55-159 (219)
57 TIGR02081 metW methionine bios 99.2 3E-11 6.6E-16 108.4 9.5 90 182-276 15-105 (194)
58 PRK00517 prmA ribosomal protei 99.2 1.2E-10 2.6E-15 109.1 12.5 117 180-305 119-236 (250)
59 PRK08287 cobalt-precorrin-6Y C 99.2 1.4E-10 2.9E-15 103.5 12.3 118 176-301 27-150 (187)
60 PRK00216 ubiE ubiquinone/menaq 99.2 1E-10 2.2E-15 106.0 10.8 101 180-284 51-159 (239)
61 TIGR02469 CbiT precorrin-6Y C5 99.2 1.5E-10 3.2E-15 94.5 10.6 96 180-282 19-121 (124)
62 PRK14968 putative methyltransf 99.2 2.6E-10 5.6E-15 100.1 12.7 119 180-304 23-170 (188)
63 PRK11188 rrmJ 23S rRNA methylt 99.2 8.9E-11 1.9E-15 107.6 9.4 134 181-322 52-206 (209)
64 TIGR00438 rrmJ cell division p 99.2 1E-10 2.2E-15 104.5 9.2 139 180-322 32-187 (188)
65 TIGR00091 tRNA (guanine-N(7)-) 99.2 8.9E-11 1.9E-15 105.9 8.5 116 181-297 17-147 (194)
66 PRK04266 fibrillarin; Provisio 99.2 4.4E-10 9.5E-15 104.6 13.2 96 180-281 72-174 (226)
67 PRK07580 Mg-protoporphyrin IX 99.2 3.3E-10 7.2E-15 102.9 11.9 99 180-282 63-165 (230)
68 TIGR03840 TMPT_Se_Te thiopurin 99.1 9.9E-11 2.1E-15 107.9 8.2 98 181-282 35-151 (213)
69 PRK00377 cbiT cobalt-precorrin 99.1 5.1E-10 1.1E-14 101.0 12.6 147 149-303 9-166 (198)
70 COG4106 Tam Trans-aconitate me 99.1 2.5E-10 5.5E-15 105.6 10.0 125 170-303 20-153 (257)
71 TIGR01983 UbiG ubiquinone bios 99.1 2.4E-10 5.1E-15 103.7 9.1 99 180-284 45-150 (224)
72 PRK05134 bifunctional 3-demeth 99.1 3.5E-10 7.6E-15 103.6 9.7 100 179-284 47-152 (233)
73 PRK09489 rsmC 16S ribosomal RN 99.1 7.7E-10 1.7E-14 108.8 12.6 115 181-297 197-319 (342)
74 PRK15001 SAM-dependent 23S rib 99.1 7.8E-10 1.7E-14 110.2 12.6 119 174-295 222-354 (378)
75 PRK13944 protein-L-isoaspartat 99.1 3.5E-10 7.6E-15 102.9 8.9 100 176-284 68-174 (205)
76 KOG4300 Predicted methyltransf 99.1 4.3E-10 9.3E-15 103.5 9.1 100 181-285 77-184 (252)
77 TIGR02716 C20_methyl_CrtF C-20 99.1 4.5E-10 9.7E-15 107.7 9.7 105 176-284 145-255 (306)
78 PRK13255 thiopurine S-methyltr 99.1 4.8E-10 1E-14 103.6 9.5 97 181-281 38-153 (218)
79 TIGR03438 probable methyltrans 99.1 5.5E-10 1.2E-14 107.5 10.0 126 151-282 37-176 (301)
80 PF08003 Methyltransf_9: Prote 99.0 8.8E-10 1.9E-14 106.5 10.0 106 172-283 107-219 (315)
81 KOG1541 Predicted protein carb 99.0 1.9E-09 4.2E-14 100.1 10.5 142 176-320 46-201 (270)
82 COG2264 PrmA Ribosomal protein 99.0 4.7E-09 1E-13 101.5 13.7 143 154-308 140-289 (300)
83 PRK09328 N5-glutamine S-adenos 99.0 4.7E-09 1E-13 98.2 13.1 139 180-322 108-275 (275)
84 PLN02585 magnesium protoporphy 99.0 8.4E-10 1.8E-14 107.5 8.1 97 180-281 144-248 (315)
85 TIGR03534 RF_mod_PrmC protein- 99.0 3E-09 6.5E-14 97.8 11.3 119 181-302 88-236 (251)
86 TIGR00080 pimt protein-L-isoas 99.0 1.4E-09 2.9E-14 99.4 8.7 99 176-283 73-177 (215)
87 KOG3010 Methyltransferase [Gen 99.0 6.9E-10 1.5E-14 103.9 6.6 112 182-301 35-158 (261)
88 PLN03075 nicotianamine synthas 99.0 8.7E-09 1.9E-13 99.6 14.3 137 180-324 123-276 (296)
89 PRK13942 protein-L-isoaspartat 99.0 2.3E-09 4.9E-14 98.3 9.1 98 176-283 72-176 (212)
90 PRK14967 putative methyltransf 99.0 5.4E-09 1.2E-13 96.0 11.6 118 181-303 37-180 (223)
91 PRK14121 tRNA (guanine-N(7)-)- 99.0 2.9E-09 6.2E-14 106.4 10.5 115 180-295 122-248 (390)
92 cd02440 AdoMet_MTases S-adenos 99.0 2.3E-09 4.9E-14 81.7 7.6 96 183-282 1-103 (107)
93 TIGR03533 L3_gln_methyl protei 99.0 7.8E-09 1.7E-13 99.0 12.8 124 181-306 122-273 (284)
94 PF05175 MTS: Methyltransferas 98.9 2.5E-09 5.4E-14 94.5 8.2 116 180-296 31-155 (170)
95 TIGR00536 hemK_fam HemK family 98.9 1.1E-08 2.4E-13 97.6 12.6 135 182-323 116-283 (284)
96 PF13659 Methyltransf_26: Meth 98.9 1.3E-09 2.9E-14 88.7 5.4 100 182-283 2-115 (117)
97 PF06325 PrmA: Ribosomal prote 98.9 5.2E-09 1.1E-13 101.2 10.2 139 153-306 138-282 (295)
98 PRK07402 precorrin-6B methylas 98.9 1.3E-08 2.8E-13 91.6 11.8 115 176-298 36-158 (196)
99 PLN02232 ubiquinone biosynthes 98.9 2.1E-09 4.6E-14 94.3 6.2 73 209-285 1-83 (160)
100 PRK14966 unknown domain/N5-glu 98.9 1.5E-08 3.3E-13 102.1 12.9 137 182-323 253-419 (423)
101 COG4123 Predicted O-methyltran 98.9 2.1E-08 4.5E-13 94.8 12.8 123 180-303 44-190 (248)
102 KOG2361 Predicted methyltransf 98.9 5.7E-09 1.2E-13 97.9 8.4 105 181-286 72-186 (264)
103 TIGR01177 conserved hypothetic 98.9 8.4E-09 1.8E-13 100.4 9.6 117 179-300 181-309 (329)
104 TIGR03704 PrmC_rel_meth putati 98.9 1.6E-08 3.4E-13 95.3 10.6 128 181-309 87-242 (251)
105 PTZ00146 fibrillarin; Provisio 98.8 3.9E-08 8.4E-13 95.0 13.3 98 180-282 132-236 (293)
106 COG2890 HemK Methylase of poly 98.8 2.4E-08 5.1E-13 95.8 11.7 138 183-322 113-276 (280)
107 PRK00312 pcm protein-L-isoaspa 98.8 2.3E-08 5E-13 90.8 10.1 95 176-284 74-176 (212)
108 PRK11805 N5-glutamine S-adenos 98.8 4.5E-08 9.7E-13 95.0 11.7 115 182-298 135-277 (307)
109 PRK01544 bifunctional N5-gluta 98.8 4.3E-08 9.4E-13 101.1 11.7 138 181-321 139-305 (506)
110 PF05219 DREV: DREV methyltran 98.7 6.8E-08 1.5E-12 91.7 10.5 92 180-282 94-187 (265)
111 PRK04457 spermidine synthase; 98.7 1.9E-07 4.2E-12 88.5 13.3 102 179-282 65-176 (262)
112 PF05148 Methyltransf_8: Hypot 98.7 5E-08 1.1E-12 90.1 8.5 138 153-308 32-186 (219)
113 PRK00811 spermidine synthase; 98.7 7.1E-08 1.5E-12 92.4 9.4 105 178-283 74-191 (283)
114 PRK10901 16S rRNA methyltransf 98.6 2E-07 4.2E-12 94.1 11.7 108 176-284 240-373 (427)
115 PRK14901 16S rRNA methyltransf 98.6 1.7E-07 3.8E-12 94.6 11.3 126 176-301 248-407 (434)
116 PF01739 CheR: CheR methyltran 98.6 1.1E-07 2.5E-12 86.8 8.8 128 155-285 5-177 (196)
117 TIGR00563 rsmB ribosomal RNA s 98.6 1.5E-07 3.3E-12 94.8 10.3 108 176-284 234-369 (426)
118 PRK14903 16S rRNA methyltransf 98.6 1.1E-07 2.4E-12 96.3 8.8 109 176-284 233-367 (431)
119 PRK13943 protein-L-isoaspartat 98.6 1.9E-07 4.2E-12 91.3 10.1 95 180-283 80-180 (322)
120 TIGR00417 speE spermidine synt 98.6 2.1E-07 4.5E-12 88.3 10.0 105 177-283 69-186 (270)
121 PRK01581 speE spermidine synth 98.6 6E-07 1.3E-11 89.3 13.0 148 177-325 147-316 (374)
122 PF03291 Pox_MCEL: mRNA cappin 98.6 1.2E-07 2.7E-12 93.0 8.0 105 180-286 62-189 (331)
123 PF00891 Methyltransf_2: O-met 98.6 2E-07 4.3E-12 86.2 8.5 103 175-284 95-200 (241)
124 TIGR00446 nop2p NOL1/NOP2/sun 98.6 3E-07 6.4E-12 87.1 9.9 109 176-284 67-200 (264)
125 PRK14902 16S rRNA methyltransf 98.6 2.9E-07 6.2E-12 93.2 10.4 109 176-284 246-380 (444)
126 PRK14904 16S rRNA methyltransf 98.5 2.5E-07 5.4E-12 93.8 9.2 108 176-284 246-378 (445)
127 PF02390 Methyltransf_4: Putat 98.5 2.9E-07 6.4E-12 83.8 8.2 114 182-298 19-149 (195)
128 PRK11783 rlmL 23S rRNA m(2)G24 98.5 4.8E-07 1E-11 96.8 11.0 123 181-305 539-678 (702)
129 PLN02781 Probable caffeoyl-CoA 98.5 9.6E-07 2.1E-11 82.4 11.2 98 179-283 67-178 (234)
130 COG2813 RsmC 16S RNA G1207 met 98.5 1.7E-06 3.6E-11 83.8 13.0 121 174-296 152-281 (300)
131 PLN02366 spermidine synthase 98.5 5.4E-07 1.2E-11 87.7 9.8 103 179-282 90-205 (308)
132 PHA03411 putative methyltransf 98.5 3.4E-07 7.3E-12 87.9 7.9 98 181-282 65-182 (279)
133 PF01728 FtsJ: FtsJ-like methy 98.5 5.8E-07 1.3E-11 79.6 8.7 140 176-322 19-180 (181)
134 KOG1271 Methyltransferases [Ge 98.5 4.6E-07 1E-11 82.3 8.0 111 182-294 69-192 (227)
135 smart00650 rADc Ribosomal RNA 98.5 4.2E-07 9.2E-12 79.9 7.6 101 176-284 9-114 (169)
136 PRK13256 thiopurine S-methyltr 98.5 3.7E-07 8.1E-12 85.3 7.3 99 180-282 43-162 (226)
137 PRK03612 spermidine synthase; 98.5 8.6E-07 1.9E-11 91.8 10.7 124 179-303 296-440 (521)
138 KOG3045 Predicted RNA methylas 98.5 1.6E-06 3.4E-11 82.6 11.4 108 181-308 181-292 (325)
139 COG2242 CobL Precorrin-6B meth 98.5 6.2E-06 1.4E-10 74.9 14.7 144 149-303 3-157 (187)
140 PF05891 Methyltransf_PK: AdoM 98.4 4.1E-07 9E-12 84.4 6.5 102 180-284 55-162 (218)
141 COG0500 SmtA SAM-dependent met 98.4 1.5E-06 3.2E-11 67.4 8.6 95 184-285 52-157 (257)
142 PRK13168 rumA 23S rRNA m(5)U19 98.4 1.4E-06 3.1E-11 88.2 10.5 121 172-303 289-420 (443)
143 PF01135 PCMT: Protein-L-isoas 98.4 4.6E-07 9.9E-12 83.6 5.8 102 172-284 64-173 (209)
144 PRK10611 chemotaxis methyltran 98.4 1E-06 2.2E-11 85.0 7.9 123 153-284 94-263 (287)
145 PRK03522 rumB 23S rRNA methylu 98.3 1.5E-06 3.3E-11 84.2 8.5 112 180-303 173-292 (315)
146 TIGR00478 tly hemolysin TlyA f 98.3 1.8E-06 3.9E-11 80.8 8.5 108 180-303 75-213 (228)
147 PF05724 TPMT: Thiopurine S-me 98.3 2.6E-06 5.6E-11 79.0 8.1 122 178-304 35-187 (218)
148 KOG1975 mRNA cap methyltransfe 98.3 2.8E-06 6.1E-11 83.0 8.3 114 179-294 116-250 (389)
149 TIGR00479 rumA 23S rRNA (uraci 98.2 5.4E-06 1.2E-10 83.5 10.3 118 176-303 288-416 (431)
150 PHA03412 putative methyltransf 98.2 3.2E-06 6.9E-11 79.7 8.1 97 181-281 50-160 (241)
151 PF06080 DUF938: Protein of un 98.2 1.7E-05 3.7E-10 73.1 12.5 135 183-322 28-204 (204)
152 PRK15128 23S rRNA m(5)C1962 me 98.2 7.2E-06 1.6E-10 82.4 10.4 102 181-284 221-340 (396)
153 KOG2940 Predicted methyltransf 98.2 1.1E-06 2.3E-11 82.6 3.4 98 180-282 72-173 (325)
154 COG0220 Predicted S-adenosylme 98.2 6.6E-06 1.4E-10 77.0 8.6 110 182-294 50-177 (227)
155 PF05185 PRMT5: PRMT5 arginine 98.1 6.7E-06 1.4E-10 83.9 8.4 149 129-280 131-294 (448)
156 PRK04148 hypothetical protein; 98.1 1.2E-05 2.7E-10 69.5 8.7 94 177-283 13-109 (134)
157 COG2521 Predicted archaeal met 98.1 1.1E-05 2.4E-10 76.0 8.7 139 175-323 129-287 (287)
158 KOG1269 SAM-dependent methyltr 98.1 5.4E-06 1.2E-10 82.5 7.1 119 156-283 89-215 (364)
159 PLN02672 methionine S-methyltr 98.1 1.4E-05 2.9E-10 89.0 10.6 121 181-302 119-298 (1082)
160 TIGR02085 meth_trns_rumB 23S r 98.1 1.1E-05 2.3E-10 80.4 8.7 110 181-303 234-352 (374)
161 KOG1331 Predicted methyltransf 98.1 2.7E-06 5.9E-11 81.7 4.2 96 181-282 46-142 (293)
162 PF02527 GidB: rRNA small subu 98.1 8E-05 1.7E-09 67.6 13.3 134 158-303 27-171 (184)
163 PRK01544 bifunctional N5-gluta 98.1 1.2E-05 2.7E-10 83.0 9.1 112 180-294 347-474 (506)
164 PLN02476 O-methyltransferase 98.1 3.6E-05 7.7E-10 74.1 11.4 134 177-323 115-278 (278)
165 COG1352 CheR Methylase of chem 98.0 3.4E-05 7.3E-10 73.9 10.8 105 180-286 96-244 (268)
166 PRK10909 rsmD 16S rRNA m(2)G96 98.0 3.6E-05 7.8E-10 70.5 9.7 99 181-286 54-162 (199)
167 COG4122 Predicted O-methyltran 98.0 3.5E-05 7.7E-10 71.8 9.2 138 177-323 56-218 (219)
168 PF12147 Methyltransf_20: Puta 98.0 9.3E-05 2E-09 71.6 11.8 129 177-305 132-277 (311)
169 COG2518 Pcm Protein-L-isoaspar 97.9 3.6E-05 7.8E-10 71.2 8.6 98 173-284 65-170 (209)
170 PF01596 Methyltransf_3: O-met 97.9 8.8E-05 1.9E-09 68.3 10.8 133 179-323 44-205 (205)
171 KOG1499 Protein arginine N-met 97.9 2.4E-05 5.3E-10 77.0 7.1 97 181-281 61-165 (346)
172 KOG2904 Predicted methyltransf 97.8 0.00012 2.7E-09 70.4 10.5 159 157-322 128-327 (328)
173 COG2519 GCD14 tRNA(1-methylade 97.8 0.0002 4.3E-09 68.0 11.1 112 179-300 93-213 (256)
174 PRK00274 ksgA 16S ribosomal RN 97.8 3.8E-05 8.3E-10 73.1 6.3 70 177-250 39-112 (272)
175 KOG2899 Predicted methyltransf 97.8 8.4E-05 1.8E-09 70.4 8.3 103 180-284 58-210 (288)
176 PLN02823 spermine synthase 97.8 0.00036 7.7E-09 68.9 12.6 103 178-282 101-219 (336)
177 PF09243 Rsm22: Mitochondrial 97.7 0.00037 8.1E-09 66.6 11.9 122 177-303 30-164 (274)
178 PRK14896 ksgA 16S ribosomal RN 97.7 7.3E-05 1.6E-09 70.5 6.8 70 180-252 29-100 (258)
179 PF10294 Methyltransf_16: Puta 97.7 0.0001 2.3E-09 65.6 6.4 103 179-286 44-159 (173)
180 PRK00536 speE spermidine synth 97.6 0.00039 8.5E-09 66.5 10.0 98 175-284 67-172 (262)
181 TIGR00755 ksgA dimethyladenosi 97.6 0.00029 6.3E-09 66.1 9.0 46 176-224 25-70 (253)
182 COG2263 Predicted RNA methylas 97.6 0.00058 1.3E-08 62.5 9.9 98 152-255 21-120 (198)
183 COG1189 Predicted rRNA methyla 97.5 0.0012 2.6E-08 62.4 11.0 135 180-322 79-241 (245)
184 PTZ00338 dimethyladenosine tra 97.4 0.00023 5E-09 68.9 5.8 68 180-250 36-108 (294)
185 PRK11727 23S rRNA mA1618 methy 97.4 0.00079 1.7E-08 66.2 9.4 125 178-305 112-267 (321)
186 COG0357 GidB Predicted S-adeno 97.4 0.0033 7.2E-08 58.5 12.6 152 158-320 46-209 (215)
187 TIGR03439 methyl_EasF probable 97.4 0.002 4.3E-08 63.3 11.7 126 151-282 50-196 (319)
188 PF08704 GCD14: tRNA methyltra 97.4 0.00048 1E-08 65.3 7.0 117 177-301 37-165 (247)
189 COG4627 Uncharacterized protei 97.3 6.8E-05 1.5E-09 66.7 0.9 44 238-282 41-85 (185)
190 PLN02589 caffeoyl-CoA O-methyl 97.3 0.00038 8.3E-09 65.9 5.9 100 177-283 76-190 (247)
191 COG1041 Predicted DNA modifica 97.3 0.002 4.3E-08 63.8 10.9 110 181-294 198-321 (347)
192 PRK11933 yebU rRNA (cytosine-C 97.3 0.001 2.3E-08 68.4 9.2 108 177-284 110-243 (470)
193 COG1092 Predicted SAM-dependen 97.3 0.00068 1.5E-08 68.3 7.5 126 156-286 196-339 (393)
194 KOG3191 Predicted N6-DNA-methy 97.3 0.0094 2E-07 54.6 13.9 128 176-305 39-191 (209)
195 PRK04338 N(2),N(2)-dimethylgua 97.3 0.00076 1.7E-08 67.6 7.5 92 182-282 59-157 (382)
196 COG3963 Phospholipid N-methylt 97.2 0.0019 4.2E-08 58.3 8.4 111 172-283 40-156 (194)
197 TIGR00095 RNA methyltransferas 97.2 0.0013 2.9E-08 59.5 7.6 99 181-285 50-161 (189)
198 PF11968 DUF3321: Putative met 97.1 0.0013 2.9E-08 61.2 7.2 112 182-305 53-179 (219)
199 TIGR02143 trmA_only tRNA (urac 97.1 0.002 4.4E-08 63.8 9.0 107 183-303 200-330 (353)
200 PF01170 UPF0020: Putative RNA 97.1 0.00086 1.9E-08 60.2 5.7 124 177-304 25-168 (179)
201 PRK00050 16S rRNA m(4)C1402 me 97.1 0.00061 1.3E-08 66.2 4.7 52 173-224 12-63 (296)
202 PF02475 Met_10: Met-10+ like- 97.0 0.00098 2.1E-08 61.3 5.4 89 181-280 102-199 (200)
203 TIGR02987 met_A_Alw26 type II 97.0 0.0076 1.6E-07 62.4 12.4 43 181-223 32-81 (524)
204 KOG3987 Uncharacterized conser 97.0 0.00041 8.9E-09 64.6 2.6 92 180-282 112-206 (288)
205 KOG3178 Hydroxyindole-O-methyl 97.0 0.0018 3.8E-08 64.0 7.2 100 180-284 177-276 (342)
206 KOG1661 Protein-L-isoaspartate 97.0 0.0016 3.4E-08 60.7 6.3 94 181-285 83-195 (237)
207 PF02384 N6_Mtase: N-6 DNA Met 97.0 0.009 2E-07 57.3 11.9 110 176-285 42-185 (311)
208 PF01564 Spermine_synth: Sperm 97.0 0.011 2.3E-07 55.9 12.0 127 178-305 74-218 (246)
209 PRK05031 tRNA (uracil-5-)-meth 96.9 0.0034 7.3E-08 62.4 8.5 108 182-303 208-339 (362)
210 COG0421 SpeE Spermidine syntha 96.9 0.0041 8.8E-08 60.1 8.7 107 175-283 71-190 (282)
211 PF07942 N2227: N2227-like pro 96.8 0.021 4.6E-07 54.9 12.4 120 180-305 56-240 (270)
212 PRK11760 putative 23S rRNA C24 96.7 0.0042 9.1E-08 61.7 7.3 92 180-282 211-304 (357)
213 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.6 0.0022 4.9E-08 61.1 4.5 103 179-283 55-199 (256)
214 PF01269 Fibrillarin: Fibrilla 96.6 0.026 5.6E-07 53.0 11.1 99 180-283 73-178 (229)
215 PF10672 Methyltrans_SAM: S-ad 96.4 0.0062 1.4E-07 59.0 6.2 103 181-285 124-240 (286)
216 TIGR00308 TRM1 tRNA(guanine-26 96.4 0.0073 1.6E-07 60.5 6.5 92 182-282 46-146 (374)
217 KOG1500 Protein arginine N-met 96.3 0.011 2.3E-07 58.8 7.2 118 179-301 176-307 (517)
218 COG5459 Predicted rRNA methyla 96.3 0.019 4E-07 57.4 8.8 106 177-284 110-226 (484)
219 KOG1663 O-methyltransferase [S 96.2 0.018 3.9E-07 54.3 7.6 101 177-283 70-183 (237)
220 COG0293 FtsJ 23S rRNA methylas 96.1 0.016 3.4E-07 53.7 6.9 134 181-322 46-200 (205)
221 KOG2352 Predicted spermine/spe 96.0 0.039 8.5E-07 56.9 9.8 99 183-284 51-162 (482)
222 PF03602 Cons_hypoth95: Conser 96.0 0.012 2.5E-07 53.3 5.1 99 181-286 43-156 (183)
223 PF13679 Methyltransf_32: Meth 95.9 0.017 3.7E-07 49.5 5.9 44 179-224 24-72 (141)
224 KOG1709 Guanidinoacetate methy 95.9 0.03 6.5E-07 52.6 7.6 101 179-284 100-207 (271)
225 COG2265 TrmA SAM-dependent met 95.8 0.036 7.9E-07 56.6 8.5 107 172-288 285-401 (432)
226 COG0144 Sun tRNA and rRNA cyto 95.7 0.062 1.3E-06 53.4 9.3 109 175-284 151-289 (355)
227 PRK13699 putative methylase; P 95.6 0.024 5.2E-07 52.9 5.8 22 262-283 51-72 (227)
228 KOG3420 Predicted RNA methylas 95.1 0.051 1.1E-06 48.4 5.8 91 179-271 47-144 (185)
229 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.1 0.051 1.1E-06 52.3 6.4 122 176-297 81-237 (283)
230 PF09445 Methyltransf_15: RNA 95.0 0.029 6.2E-07 50.2 4.1 108 182-294 1-131 (163)
231 PLN02668 indole-3-acetate carb 94.9 0.24 5.2E-06 50.1 10.8 18 240-257 158-176 (386)
232 TIGR01444 fkbM_fam methyltrans 94.8 0.038 8.2E-07 46.4 4.2 40 183-223 1-40 (143)
233 PF03059 NAS: Nicotianamine sy 94.8 0.36 7.7E-06 46.7 11.2 139 180-323 120-272 (276)
234 PF13578 Methyltransf_24: Meth 94.7 0.0083 1.8E-07 48.3 -0.2 95 185-283 1-105 (106)
235 COG0742 N6-adenine-specific me 94.6 0.11 2.4E-06 47.5 7.0 102 179-286 42-157 (187)
236 PF05958 tRNA_U5-meth_tr: tRNA 94.6 0.49 1.1E-05 46.9 12.1 118 172-303 189-329 (352)
237 PF03269 DUF268: Caenorhabditi 94.5 0.028 6E-07 50.6 2.7 46 239-284 59-112 (177)
238 PRK11783 rlmL 23S rRNA m(2)G24 94.5 0.17 3.8E-06 54.6 9.2 80 207-286 258-350 (702)
239 KOG3201 Uncharacterized conser 94.2 0.064 1.4E-06 48.5 4.4 119 181-303 30-162 (201)
240 COG3897 Predicted methyltransf 94.1 0.2 4.3E-06 46.5 7.6 108 179-294 78-193 (218)
241 KOG3115 Methyltransferase-like 94.1 0.11 2.4E-06 48.5 5.8 101 182-285 62-185 (249)
242 PF06962 rRNA_methylase: Putat 94.0 0.26 5.6E-06 43.2 7.7 113 208-322 2-140 (140)
243 PF08123 DOT1: Histone methyla 93.8 0.26 5.7E-06 45.5 7.8 120 149-281 17-156 (205)
244 COG0030 KsgA Dimethyladenosine 93.7 0.21 4.6E-06 47.9 7.2 86 152-250 9-102 (259)
245 PF06859 Bin3: Bicoid-interact 93.7 0.026 5.7E-07 47.4 0.8 61 243-303 1-72 (110)
246 KOG4589 Cell division protein 93.6 0.4 8.6E-06 44.4 8.4 130 181-322 70-225 (232)
247 COG4798 Predicted methyltransf 93.6 0.34 7.3E-06 45.1 7.9 103 181-284 49-167 (238)
248 KOG0820 Ribosomal RNA adenine 93.5 0.14 2.9E-06 49.8 5.5 113 181-296 59-192 (315)
249 PF04816 DUF633: Family of unk 93.4 0.76 1.6E-05 42.4 10.1 114 184-304 1-121 (205)
250 COG1889 NOP1 Fibrillarin-like 93.3 2.2 4.7E-05 40.0 12.7 96 179-282 75-179 (231)
251 COG2520 Predicted methyltransf 93.2 0.28 6.1E-06 48.8 7.4 110 181-299 189-312 (341)
252 PF03492 Methyltransf_7: SAM d 93.2 0.1 2.2E-06 51.5 4.3 75 178-257 14-121 (334)
253 PRK11524 putative methyltransf 93.2 0.26 5.6E-06 47.2 7.0 25 262-286 59-83 (284)
254 cd08254 hydroxyacyl_CoA_DH 6-h 92.6 0.8 1.7E-05 43.1 9.3 90 181-282 166-262 (338)
255 KOG2798 Putative trehalase [Ca 92.0 0.51 1.1E-05 46.7 7.2 120 181-306 151-336 (369)
256 PF00398 RrnaAD: Ribosomal RNA 91.8 0.18 3.9E-06 47.7 3.9 62 153-224 10-71 (262)
257 PF04672 Methyltransf_19: S-ad 91.2 0.9 2E-05 43.8 7.9 104 177-283 65-190 (267)
258 COG1064 AdhP Zn-dependent alco 91.2 0.35 7.7E-06 48.1 5.3 90 181-283 167-259 (339)
259 KOG1122 tRNA and rRNA cytosine 91.1 1 2.2E-05 46.2 8.4 105 176-285 237-373 (460)
260 KOG2793 Putative N2,N2-dimethy 90.7 2.1 4.6E-05 40.8 9.8 98 180-284 86-200 (248)
261 cd08283 FDH_like_1 Glutathione 90.7 0.9 1.9E-05 44.8 7.6 101 181-283 185-306 (386)
262 PF01795 Methyltransf_5: MraW 89.7 1.5 3.2E-05 43.2 8.1 85 174-279 14-98 (310)
263 COG4262 Predicted spermidine s 88.8 1.1 2.3E-05 45.5 6.4 99 180-284 289-408 (508)
264 COG0116 Predicted N6-adenine-s 88.7 3.7 8E-05 41.6 10.3 112 177-288 188-349 (381)
265 KOG2539 Mitochondrial/chloropl 88.5 1.2 2.6E-05 46.1 6.8 106 178-284 198-316 (491)
266 KOG2915 tRNA(1-methyladenosine 88.1 3.3 7.1E-05 40.5 9.0 133 151-303 86-231 (314)
267 KOG1099 SAM-dependent methyltr 87.8 0.29 6.3E-06 46.6 1.7 115 181-299 42-184 (294)
268 cd00315 Cyt_C5_DNA_methylase C 87.4 1.6 3.4E-05 41.8 6.5 65 183-250 2-69 (275)
269 COG4076 Predicted RNA methylas 87.3 2 4.3E-05 40.0 6.8 96 182-281 34-133 (252)
270 TIGR00006 S-adenosyl-methyltra 87.0 2.6 5.7E-05 41.3 7.9 51 173-224 13-63 (305)
271 PF07942 N2227: N2227-like pro 86.6 0.18 4E-06 48.6 -0.3 60 14-76 184-244 (270)
272 PF01555 N6_N4_Mtase: DNA meth 85.4 0.87 1.9E-05 40.4 3.4 22 262-283 35-56 (231)
273 PF06859 Bin3: Bicoid-interact 85.0 0.43 9.4E-06 40.1 1.2 23 17-42 29-51 (110)
274 TIGR00675 dcm DNA-methyltransf 84.7 7.8 0.00017 37.7 10.0 134 184-322 1-160 (315)
275 PF10354 DUF2431: Domain of un 83.3 5.4 0.00012 35.5 7.5 95 187-283 3-125 (166)
276 PHA01634 hypothetical protein 82.7 3.3 7.2E-05 36.3 5.6 59 158-223 11-69 (156)
277 PF07091 FmrO: Ribosomal RNA m 81.9 2.3 5E-05 40.7 4.8 118 181-304 106-241 (251)
278 cd08230 glucose_DH Glucose deh 81.2 15 0.00032 35.5 10.4 89 181-283 173-269 (355)
279 COG0275 Predicted S-adenosylme 81.0 6.7 0.00014 38.7 7.7 66 173-250 16-81 (314)
280 PF00145 DNA_methylase: C-5 cy 80.6 6.2 0.00013 37.1 7.4 134 183-322 2-162 (335)
281 PF00107 ADH_zinc_N: Zinc-bind 80.5 2.1 4.5E-05 35.0 3.6 83 190-283 1-89 (130)
282 PF04445 SAM_MT: Putative SAM- 79.9 2.4 5.2E-05 40.2 4.2 77 176-256 71-164 (234)
283 cd05188 MDR Medium chain reduc 79.4 9.7 0.00021 34.1 7.9 93 180-284 134-233 (271)
284 cd08245 CAD Cinnamyl alcohol d 78.5 9.5 0.00021 36.0 7.9 91 180-282 162-255 (330)
285 PF02153 PDH: Prephenate dehyd 78.2 3.9 8.5E-05 38.6 5.1 99 194-303 1-102 (258)
286 KOG2187 tRNA uracil-5-methyltr 78.0 2 4.3E-05 45.0 3.3 40 181-223 384-423 (534)
287 PRK07417 arogenate dehydrogena 77.6 12 0.00026 35.5 8.3 86 184-284 3-90 (279)
288 PRK09424 pntA NAD(P) transhydr 77.2 8.9 0.00019 40.3 7.8 97 180-282 164-284 (509)
289 PRK00517 prmA ribosomal protei 76.7 1.9 4.2E-05 40.3 2.6 20 15-34 196-215 (250)
290 KOG2198 tRNA cytosine-5-methyl 75.2 26 0.00057 35.5 10.1 125 179-304 154-325 (375)
291 COG1063 Tdh Threonine dehydrog 74.9 9 0.00019 37.7 6.8 89 183-282 171-268 (350)
292 cd08234 threonine_DH_like L-th 74.6 11 0.00024 35.5 7.2 92 180-282 159-256 (334)
293 PRK09880 L-idonate 5-dehydroge 73.8 14 0.00031 35.5 7.8 93 180-283 169-266 (343)
294 KOG1562 Spermidine synthase [A 73.8 7.6 0.00017 38.4 5.8 114 179-294 120-252 (337)
295 PF07757 AdoMet_MTase: Predict 73.1 3.3 7.1E-05 35.0 2.8 31 180-213 58-88 (112)
296 COG4301 Uncharacterized conser 72.8 46 0.00099 32.5 10.6 100 181-282 79-192 (321)
297 cd08232 idonate-5-DH L-idonate 72.0 14 0.00031 35.0 7.3 92 180-282 165-261 (339)
298 PF01861 DUF43: Protein of unk 71.6 26 0.00057 33.5 8.8 117 180-303 44-174 (243)
299 PF11899 DUF3419: Protein of u 71.3 4.2 9.1E-05 41.1 3.6 45 240-285 291-336 (380)
300 KOG0024 Sorbitol dehydrogenase 71.2 17 0.00037 36.3 7.7 95 180-283 169-273 (354)
301 COG0287 TyrA Prephenate dehydr 71.1 12 0.00025 36.3 6.5 106 182-299 4-116 (279)
302 COG0270 Dcm Site-specific DNA 70.2 43 0.00093 32.8 10.3 135 182-320 4-164 (328)
303 PRK10742 putative methyltransf 69.9 13 0.00029 35.5 6.5 91 176-274 84-191 (250)
304 PRK11088 rrmA 23S rRNA methylt 69.9 1.8 4E-05 40.8 0.7 21 15-35 164-184 (272)
305 PLN02232 ubiquinone biosynthes 67.3 1.9 4.2E-05 37.6 0.2 19 13-31 62-80 (160)
306 cd08261 Zn_ADH7 Alcohol dehydr 67.0 12 0.00027 35.4 5.7 90 181-282 160-257 (337)
307 PRK01747 mnmC bifunctional tRN 66.2 22 0.00048 38.0 8.0 59 241-303 164-223 (662)
308 KOG1596 Fibrillarin and relate 66.2 13 0.00027 36.1 5.4 93 180-283 156-261 (317)
309 PF14740 DUF4471: Domain of un 65.2 11 0.00024 36.8 5.0 57 239-303 218-285 (289)
310 PRK07502 cyclohexadienyl dehyd 64.5 28 0.0006 33.4 7.6 91 181-281 6-98 (307)
311 PRK15001 SAM-dependent 23S rib 64.4 33 0.00071 34.7 8.4 92 183-285 47-144 (378)
312 TIGR00406 prmA ribosomal prote 64.3 3.5 7.6E-05 39.5 1.4 19 15-33 242-260 (288)
313 PF04989 CmcI: Cephalosporin h 63.7 15 0.00032 34.3 5.3 111 167-285 22-149 (206)
314 TIGR02822 adh_fam_2 zinc-bindi 63.7 51 0.0011 31.7 9.3 88 180-283 165-254 (329)
315 COG2384 Predicted SAM-dependen 63.2 1.4E+02 0.003 28.3 12.8 134 183-323 19-159 (226)
316 cd08255 2-desacetyl-2-hydroxye 63.1 36 0.00077 31.2 7.8 91 180-282 97-189 (277)
317 COG0286 HsdM Type I restrictio 62.8 54 0.0012 34.1 9.9 104 176-281 182-324 (489)
318 PRK08507 prephenate dehydrogen 62.4 28 0.00061 32.8 7.1 84 184-280 3-88 (275)
319 PF03514 GRAS: GRAS domain fam 62.0 32 0.00069 34.5 7.8 108 175-282 105-243 (374)
320 PF02254 TrkA_N: TrkA-N domain 60.5 41 0.00088 26.9 6.9 90 189-286 4-99 (116)
321 TIGR03201 dearomat_had 6-hydro 59.9 30 0.00065 33.3 7.0 92 180-283 166-272 (349)
322 KOG2651 rRNA adenine N-6-methy 59.3 24 0.00052 36.2 6.2 36 179-217 152-188 (476)
323 COG0863 DNA modification methy 58.2 24 0.00051 33.1 5.8 42 262-303 78-119 (302)
324 cd00401 AdoHcyase S-adenosyl-L 58.1 41 0.00089 34.5 7.8 86 180-283 201-289 (413)
325 PLN02233 ubiquinone biosynthes 58.1 2.4 5.3E-05 40.0 -0.9 20 12-31 162-181 (261)
326 PRK10258 biotin biosynthesis p 57.3 1.8 4E-05 40.0 -1.8 26 9-34 117-142 (251)
327 PF02005 TRM: N2,N2-dimethylgu 57.1 15 0.00033 37.0 4.5 94 181-283 50-154 (377)
328 PTZ00146 fibrillarin; Provisio 57.1 6 0.00013 38.7 1.6 19 13-31 218-236 (293)
329 TIGR00027 mthyl_TIGR00027 meth 57.0 53 0.0012 31.2 8.0 99 181-283 82-197 (260)
330 cd08294 leukotriene_B4_DH_like 57.0 47 0.001 31.1 7.6 90 180-282 143-240 (329)
331 PLN03154 putative allyl alcoho 56.9 50 0.0011 32.0 8.0 90 180-282 158-257 (348)
332 PRK00121 trmB tRNA (guanine-N( 56.7 6 0.00013 35.8 1.4 22 13-34 137-158 (202)
333 PF01209 Ubie_methyltran: ubiE 56.7 2.6 5.7E-05 39.4 -0.9 18 13-30 134-151 (233)
334 TIGR02825 B4_12hDH leukotriene 56.3 56 0.0012 30.9 8.1 89 181-282 139-236 (325)
335 KOG4300 Predicted methyltransf 56.1 3.2 7E-05 39.1 -0.4 17 14-30 164-180 (252)
336 PRK03659 glutathione-regulated 56.0 39 0.00085 36.0 7.6 87 189-284 406-499 (601)
337 PF03446 NAD_binding_2: NAD bi 55.5 43 0.00092 29.0 6.6 95 187-296 7-109 (163)
338 cd08295 double_bond_reductase_ 55.3 54 0.0012 31.3 7.8 90 180-282 151-250 (338)
339 cd08237 ribitol-5-phosphate_DH 54.9 46 0.00099 32.1 7.4 90 180-282 163-255 (341)
340 cd05278 FDH_like Formaldehyde 54.2 54 0.0012 31.0 7.6 91 181-282 168-266 (347)
341 cd08281 liver_ADH_like1 Zinc-d 53.3 47 0.001 32.4 7.2 92 181-283 192-290 (371)
342 PF05430 Methyltransf_30: S-ad 53.2 33 0.00072 29.2 5.4 75 242-323 49-124 (124)
343 TIGR03451 mycoS_dep_FDH mycoth 52.7 75 0.0016 30.7 8.5 91 181-282 177-275 (358)
344 cd08236 sugar_DH NAD(P)-depend 52.5 32 0.0007 32.6 5.8 92 180-282 159-257 (343)
345 PF13489 Methyltransf_23: Meth 51.4 2.2 4.8E-05 35.7 -2.2 23 13-35 96-118 (161)
346 PF14314 Methyltrans_Mon: Viru 51.3 1.2E+02 0.0027 33.1 10.3 84 240-326 412-504 (675)
347 TIGR03366 HpnZ_proposed putati 51.0 57 0.0012 30.4 7.1 93 180-283 120-218 (280)
348 PRK06522 2-dehydropantoate 2-r 49.9 97 0.0021 29.0 8.5 104 183-295 2-113 (304)
349 COG1565 Uncharacterized conser 48.9 49 0.0011 33.5 6.5 59 159-217 55-121 (370)
350 PRK08287 cobalt-precorrin-6Y C 48.8 19 0.00041 31.7 3.4 41 15-72 114-154 (187)
351 smart00828 PKS_MT Methyltransf 48.6 4.4 9.6E-05 36.5 -0.8 20 14-33 86-105 (224)
352 PF06080 DUF938: Protein of un 48.5 19 0.00041 33.5 3.4 67 14-81 123-204 (204)
353 PF02636 Methyltransf_28: Puta 48.0 22 0.00048 33.2 3.8 44 181-224 19-69 (252)
354 PF01234 NNMT_PNMT_TEMT: NNMT/ 47.9 6.9 0.00015 37.5 0.4 15 19-33 186-200 (256)
355 TIGR00872 gnd_rel 6-phosphoglu 47.6 68 0.0015 30.8 7.2 85 184-281 3-91 (298)
356 TIGR00497 hsdM type I restrict 47.5 1E+02 0.0022 32.0 8.9 98 181-278 218-350 (501)
357 PLN02244 tocopherol O-methyltr 47.4 4.7 0.0001 39.6 -0.9 22 12-33 203-224 (340)
358 PRK10669 putative cation:proto 46.8 75 0.0016 33.3 7.9 88 189-285 423-517 (558)
359 PF02558 ApbA: Ketopantoate re 46.7 49 0.0011 27.7 5.4 98 187-295 4-114 (151)
360 cd05281 TDH Threonine dehydrog 46.6 98 0.0021 29.4 8.1 92 180-283 163-262 (341)
361 PF05148 Methyltransf_8: Hypot 46.1 3.3 7.1E-05 38.9 -2.1 57 13-84 139-200 (219)
362 TIGR00138 gidB 16S rRNA methyl 46.0 15 0.00033 32.8 2.3 19 16-34 126-144 (181)
363 PLN02353 probable UDP-glucose 46.0 39 0.00086 35.1 5.6 101 183-284 3-128 (473)
364 PRK12921 2-dehydropantoate 2-r 45.9 85 0.0018 29.5 7.5 103 183-295 2-115 (305)
365 PRK04266 fibrillarin; Provisio 45.4 5.4 0.00012 37.2 -0.8 18 14-31 158-175 (226)
366 cd08285 NADP_ADH NADP(H)-depen 44.9 80 0.0017 30.2 7.3 91 181-282 167-265 (351)
367 PRK06274 indolepyruvate oxidor 44.9 59 0.0013 29.1 5.9 33 241-284 65-97 (197)
368 COG2264 PrmA Ribosomal protein 44.8 8.1 0.00018 37.9 0.3 17 17-33 248-264 (300)
369 PTZ00098 phosphoethanolamine N 44.7 5.5 0.00012 37.7 -0.8 21 14-34 138-158 (263)
370 PRK00107 gidB 16S rRNA methylt 44.3 19 0.0004 32.6 2.6 38 16-71 129-166 (187)
371 TIGR01202 bchC 2-desacetyl-2-h 44.2 88 0.0019 29.7 7.4 84 181-282 145-230 (308)
372 PRK11064 wecC UDP-N-acetyl-D-m 43.8 58 0.0013 33.0 6.3 103 182-293 4-131 (415)
373 KOG3045 Predicted RNA methylas 43.5 4.7 0.0001 39.3 -1.5 55 14-83 246-305 (325)
374 PRK01683 trans-aconitate 2-met 43.2 5.1 0.00011 37.1 -1.3 25 9-33 107-131 (258)
375 PRK07402 precorrin-6B methylas 43.1 12 0.00025 33.4 1.1 20 14-33 124-143 (196)
376 PF03807 F420_oxidored: NADP o 42.8 50 0.0011 25.5 4.6 80 190-280 6-91 (96)
377 cd08293 PTGR2 Prostaglandin re 42.7 75 0.0016 30.1 6.6 90 181-282 155-253 (345)
378 PRK11873 arsM arsenite S-adeno 42.5 9.2 0.0002 35.8 0.3 23 13-35 164-186 (272)
379 PLN02827 Alcohol dehydrogenase 42.4 52 0.0011 32.4 5.6 91 181-282 194-294 (378)
380 PF05971 Methyltransf_10: Prot 42.1 20 0.00044 35.2 2.6 71 181-254 103-188 (299)
381 cd05285 sorbitol_DH Sorbitol d 42.1 99 0.0022 29.4 7.4 91 181-282 163-264 (343)
382 TIGR00740 methyltransferase, p 42.1 6.4 0.00014 36.2 -0.8 22 12-33 141-162 (239)
383 PLN02688 pyrroline-5-carboxyla 41.7 1.3E+02 0.0027 27.9 7.9 101 184-296 3-108 (266)
384 PRK13699 putative methylase; P 41.6 43 0.00093 31.2 4.6 42 180-224 163-204 (227)
385 PF01555 N6_N4_Mtase: DNA meth 41.2 53 0.0011 28.8 5.0 41 179-222 190-230 (231)
386 TIGR00446 nop2p NOL1/NOP2/sun 41.1 32 0.00068 32.5 3.7 22 14-35 181-202 (264)
387 TIGR02072 BioC biotin biosynth 40.3 7.4 0.00016 34.8 -0.7 21 13-33 116-136 (240)
388 KOG1975 mRNA cap methyltransfe 40.1 15 0.00033 36.8 1.4 20 15-34 220-239 (389)
389 COG3414 SgaB Phosphotransferas 40.1 1E+02 0.0022 25.0 6.1 45 237-295 43-91 (93)
390 KOG1253 tRNA methyltransferase 40.1 31 0.00067 36.3 3.7 97 180-283 109-216 (525)
391 KOG1501 Arginine N-methyltrans 40.0 32 0.0007 36.0 3.7 37 182-220 68-104 (636)
392 PRK07680 late competence prote 39.6 91 0.002 29.3 6.6 101 184-296 3-109 (273)
393 PRK07066 3-hydroxybutyryl-CoA 39.4 1.4E+02 0.0031 29.4 8.1 105 180-293 6-129 (321)
394 cd08278 benzyl_alcohol_DH Benz 39.3 80 0.0017 30.6 6.4 92 181-283 187-285 (365)
395 PRK03562 glutathione-regulated 39.2 96 0.0021 33.3 7.4 93 182-283 401-498 (621)
396 PRK06035 3-hydroxyacyl-CoA deh 38.7 1.5E+02 0.0033 28.0 8.1 106 181-295 3-133 (291)
397 COG2226 UbiE Methylase involve 38.6 7.9 0.00017 36.7 -0.8 18 13-30 137-154 (238)
398 TIGR03026 NDP-sugDHase nucleot 38.5 1E+02 0.0022 31.0 7.1 97 184-284 3-121 (411)
399 cd08239 THR_DH_like L-threonin 38.2 1.7E+02 0.0037 27.7 8.4 91 181-282 164-261 (339)
400 cd08241 QOR1 Quinone oxidoredu 37.6 3E+02 0.0066 24.9 9.7 90 180-282 139-237 (323)
401 PLN02396 hexaprenyldihydroxybe 37.1 6.6 0.00014 38.7 -1.6 24 10-33 213-236 (322)
402 TIGR00477 tehB tellurite resis 36.4 8.1 0.00017 34.7 -1.1 63 13-84 114-179 (195)
403 cd08243 quinone_oxidoreductase 35.8 2.5E+02 0.0053 25.7 8.8 89 181-282 143-237 (320)
404 PRK14103 trans-aconitate 2-met 35.7 9.9 0.00021 35.4 -0.6 22 12-33 106-127 (255)
405 PF11599 AviRa: RRNA methyltra 35.5 88 0.0019 29.8 5.6 48 176-223 47-95 (246)
406 PRK09260 3-hydroxybutyryl-CoA 35.3 1.7E+02 0.0037 27.6 7.8 107 182-296 2-130 (288)
407 cd08240 6_hydroxyhexanoate_dh_ 35.2 1.3E+02 0.0027 28.8 6.9 92 180-282 175-273 (350)
408 PRK08306 dipicolinate synthase 35.2 1.8E+02 0.0039 28.1 8.0 86 180-280 151-238 (296)
409 COG1867 TRM1 N2,N2-dimethylgua 35.1 1.1E+02 0.0025 31.1 6.6 93 181-282 53-153 (380)
410 PF06325 PrmA: Ribosomal prote 35.0 23 0.00049 34.6 1.7 19 17-35 244-262 (295)
411 KOG1150 Predicted molecular ch 34.8 10 0.00023 35.4 -0.6 15 17-31 39-54 (250)
412 PRK11524 putative methyltransf 34.8 61 0.0013 30.9 4.6 44 178-224 206-249 (284)
413 PF05050 Methyltransf_21: Meth 34.5 43 0.00094 27.9 3.2 39 186-224 1-42 (167)
414 PRK00377 cbiT cobalt-precorrin 34.3 30 0.00064 30.9 2.3 20 15-34 128-147 (198)
415 PRK11880 pyrroline-5-carboxyla 34.3 1.3E+02 0.0028 27.9 6.7 99 183-295 4-106 (267)
416 KOG0822 Protein kinase inhibit 34.1 1.5E+02 0.0032 31.9 7.5 130 150-283 333-478 (649)
417 PRK05396 tdh L-threonine 3-deh 34.0 1.9E+02 0.0042 27.4 7.9 92 181-283 164-263 (341)
418 COG2933 Predicted SAM-dependen 33.5 71 0.0015 31.5 4.7 83 181-276 212-296 (358)
419 TIGR00537 hemK_rel_arch HemK-r 33.2 12 0.00027 32.7 -0.4 21 14-34 122-142 (179)
420 PRK08317 hypothetical protein; 33.1 16 0.00035 32.4 0.3 20 14-33 106-125 (241)
421 PRK11207 tellurite resistance 33.0 10 0.00022 34.1 -1.0 62 13-83 115-179 (197)
422 PRK06130 3-hydroxybutyryl-CoA 33.0 2.1E+02 0.0045 27.3 8.0 105 181-294 4-126 (311)
423 TIGR00561 pntA NAD(P) transhyd 32.8 70 0.0015 33.8 5.0 95 180-280 163-281 (511)
424 TIGR00452 methyltransferase, p 32.6 13 0.00028 36.5 -0.4 23 13-35 206-228 (314)
425 cd08267 MDR1 Medium chain dehy 32.4 3.9E+02 0.0085 24.4 9.8 92 180-283 143-240 (319)
426 TIGR02817 adh_fam_1 zinc-bindi 32.1 2.8E+02 0.0061 25.9 8.7 90 181-282 149-246 (336)
427 TIGR00438 rrmJ cell division p 32.0 22 0.00047 31.4 1.0 20 14-33 128-147 (188)
428 PLN02740 Alcohol dehydrogenase 32.0 1.4E+02 0.0031 29.2 6.8 91 181-282 199-299 (381)
429 TIGR00936 ahcY adenosylhomocys 32.0 1.7E+02 0.0038 29.9 7.6 89 180-284 194-283 (406)
430 TIGR02752 MenG_heptapren 2-hep 31.9 12 0.00026 33.9 -0.7 19 14-32 133-151 (231)
431 KOG1271 Methyltransferases [Ge 31.8 21 0.00044 33.3 0.8 21 13-33 162-182 (227)
432 COG0863 DNA modification methy 31.7 4.2E+02 0.0092 24.5 12.3 45 178-225 220-264 (302)
433 TIGR00563 rsmB ribosomal RNA s 31.7 23 0.0005 35.9 1.2 22 14-35 350-371 (426)
434 PRK15451 tRNA cmo(5)U34 methyl 31.5 12 0.00026 34.8 -0.8 20 13-32 145-164 (247)
435 KOG2920 Predicted methyltransf 31.3 32 0.0007 33.5 2.1 62 152-215 85-149 (282)
436 PRK11188 rrmJ 23S rRNA methylt 31.1 13 0.00028 34.0 -0.6 18 14-31 147-164 (209)
437 PRK11705 cyclopropane fatty ac 31.1 12 0.00027 37.5 -0.8 21 13-33 248-268 (383)
438 KOG2555 AICAR transformylase/I 31.0 31 0.00068 35.7 2.0 100 190-289 33-153 (588)
439 COG2871 NqrF Na+-transporting 30.8 36 0.00079 33.8 2.3 45 22-75 164-208 (410)
440 TIGR02175 PorC_KorC 2-oxoacid: 30.7 1.1E+02 0.0024 27.0 5.3 35 239-284 61-98 (177)
441 PRK15057 UDP-glucose 6-dehydro 30.5 2E+02 0.0044 28.9 7.8 35 261-296 96-132 (388)
442 cd08260 Zn_ADH6 Alcohol dehydr 30.5 2E+02 0.0042 27.3 7.4 90 181-282 166-263 (345)
443 COG4627 Uncharacterized protei 30.3 27 0.00058 31.7 1.3 24 15-38 69-92 (185)
444 PF10237 N6-adenineMlase: Prob 30.2 1.4E+02 0.0031 26.6 5.9 121 181-310 26-149 (162)
445 PRK05808 3-hydroxybutyryl-CoA 30.2 2.7E+02 0.0058 26.2 8.2 105 182-295 4-130 (282)
446 PRK07819 3-hydroxybutyryl-CoA 30.1 1.4E+02 0.0031 28.5 6.3 105 181-293 5-131 (286)
447 PRK05708 2-dehydropantoate 2-r 30.0 2.2E+02 0.0047 27.4 7.6 105 182-295 3-117 (305)
448 PRK10309 galactitol-1-phosphat 30.0 1.2E+02 0.0027 28.9 5.9 92 181-283 161-260 (347)
449 TIGR02441 fa_ox_alpha_mit fatt 29.6 2.1E+02 0.0046 31.5 8.2 109 180-295 334-462 (737)
450 PLN02256 arogenate dehydrogena 29.4 2.4E+02 0.0053 27.4 7.9 105 176-295 31-141 (304)
451 PRK08300 acetaldehyde dehydrog 29.2 1.6E+02 0.0034 29.0 6.5 94 182-285 5-102 (302)
452 KOG4058 Uncharacterized conser 29.1 1.3E+02 0.0029 27.2 5.3 42 172-215 64-105 (199)
453 PRK15068 tRNA mo(5)U34 methylt 28.5 15 0.00032 36.0 -0.8 21 13-33 207-227 (322)
454 PRK08293 3-hydroxybutyryl-CoA 28.3 5.1E+02 0.011 24.4 10.7 40 181-223 3-44 (287)
455 PRK06476 pyrroline-5-carboxyla 28.3 2E+02 0.0043 26.7 6.8 101 184-297 3-107 (258)
456 PF07101 DUF1363: Protein of u 28.2 22 0.00049 29.5 0.4 15 184-198 6-20 (124)
457 PF12147 Methyltransf_20: Puta 28.0 31 0.00067 34.1 1.3 17 20-36 237-253 (311)
458 PRK11036 putative S-adenosyl-L 28.0 14 0.00031 34.3 -1.0 20 14-33 131-150 (255)
459 PRK05476 S-adenosyl-L-homocyst 27.6 2E+02 0.0043 29.6 7.2 87 180-284 211-300 (425)
460 PRK12490 6-phosphogluconate de 27.5 2E+02 0.0044 27.4 6.9 86 187-282 6-93 (299)
461 PRK12491 pyrroline-5-carboxyla 27.5 1.5E+02 0.0033 28.2 6.0 102 183-296 4-110 (272)
462 cd05286 QOR2 Quinone oxidoredu 27.4 3.1E+02 0.0068 24.7 7.9 89 181-282 137-234 (320)
463 cd08242 MDR_like Medium chain 27.1 4.8E+02 0.01 24.3 9.3 85 181-282 156-244 (319)
464 PRK14901 16S rRNA methyltransf 27.0 66 0.0014 32.7 3.6 21 15-35 367-387 (434)
465 PRK06545 prephenate dehydrogen 27.0 2.9E+02 0.0064 27.2 8.1 100 183-294 2-108 (359)
466 cd08265 Zn_ADH3 Alcohol dehydr 26.8 1.5E+02 0.0034 28.9 6.1 91 182-282 205-306 (384)
467 TIGR00091 tRNA (guanine-N(7)-) 26.6 51 0.0011 29.4 2.4 21 14-34 114-134 (194)
468 PLN02494 adenosylhomocysteinas 26.3 1.2E+02 0.0026 31.8 5.4 89 181-284 254-342 (477)
469 cd08289 MDR_yhfp_like Yhfp put 26.3 2.3E+02 0.005 26.3 7.0 90 181-283 147-243 (326)
470 TIGR01692 HIBADH 3-hydroxyisob 25.6 2.5E+02 0.0053 26.6 7.0 97 187-296 2-105 (288)
471 cd08258 Zn_ADH4 Alcohol dehydr 25.5 3.8E+02 0.0083 25.1 8.4 92 181-282 165-263 (306)
472 KOG0023 Alcohol dehydrogenase, 25.5 92 0.002 31.3 4.1 94 176-283 179-279 (360)
473 PRK08655 prephenate dehydrogen 25.0 3.5E+02 0.0075 27.7 8.4 100 183-296 2-107 (437)
474 PF03269 DUF268: Caenorhabditi 24.9 21 0.00045 32.5 -0.4 19 15-33 94-112 (177)
475 cd08300 alcohol_DH_class_III c 24.9 2.4E+02 0.0051 27.4 6.9 91 181-282 187-287 (368)
476 PF01795 Methyltransf_5: MraW 24.8 1.1E+02 0.0023 30.3 4.4 38 261-298 219-257 (310)
477 PRK09489 rsmC 16S ribosomal RN 24.5 3.8E+02 0.0083 26.5 8.4 105 181-296 20-126 (342)
478 TIGR00006 S-adenosyl-methyltra 24.5 94 0.002 30.6 4.0 26 261-286 218-243 (305)
479 PRK08534 pyruvate ferredoxin o 24.3 1.9E+02 0.0042 25.6 5.7 32 242-284 65-98 (181)
480 KOG2730 Methylase [General fun 24.3 53 0.0011 31.4 2.1 41 180-223 94-134 (263)
481 PRK11730 fadB multifunctional 24.2 2.7E+02 0.0059 30.4 7.8 108 180-294 312-439 (715)
482 PF03291 Pox_MCEL: mRNA cappin 24.1 22 0.00047 35.2 -0.5 17 17-33 171-187 (331)
483 PRK12335 tellurite resistance 24.0 19 0.0004 34.4 -1.0 17 14-30 205-221 (287)
484 PRK10901 16S rRNA methyltransf 24.0 38 0.00083 34.3 1.2 22 14-35 354-375 (427)
485 PRK08268 3-hydroxy-acyl-CoA de 23.7 2E+02 0.0044 30.0 6.5 106 180-294 6-133 (507)
486 cd05279 Zn_ADH1 Liver alcohol 23.5 2.8E+02 0.0061 26.8 7.2 91 181-282 184-284 (365)
487 PLN02490 MPBQ/MSBQ methyltrans 23.4 30 0.00065 34.5 0.3 20 14-33 197-216 (340)
488 PF01558 POR: Pyruvate ferredo 23.2 2.1E+02 0.0046 24.8 5.7 35 240-285 53-88 (173)
489 TIGR03534 RF_mod_PrmC protein- 22.7 78 0.0017 28.7 2.9 19 15-33 200-218 (251)
490 PF06460 NSP13: Coronavirus NS 22.7 7.4E+02 0.016 24.4 9.5 133 180-323 61-209 (299)
491 cd08263 Zn_ADH10 Alcohol dehyd 22.5 5.1E+02 0.011 24.9 8.8 91 181-282 188-286 (367)
492 PF05206 TRM13: Methyltransfer 22.1 75 0.0016 30.5 2.7 34 181-214 19-56 (259)
493 TIGR01177 conserved hypothetic 22.1 23 0.00051 34.4 -0.7 21 14-34 276-296 (329)
494 PF04563 RNA_pol_Rpb2_1: RNA p 21.9 35 0.00077 31.0 0.5 11 24-34 130-140 (203)
495 TIGR02818 adh_III_F_hyde S-(hy 21.9 2.8E+02 0.0062 26.9 6.9 91 181-282 186-286 (368)
496 cd08279 Zn_ADH_class_III Class 21.7 5.5E+02 0.012 24.7 8.8 92 181-283 183-282 (363)
497 cd08277 liver_alcohol_DH_like 21.6 2.8E+02 0.0061 26.8 6.7 91 181-282 185-285 (365)
498 PRK05134 bifunctional 3-demeth 21.4 25 0.00055 31.8 -0.6 21 14-34 133-153 (233)
499 KOG2899 Predicted methyltransf 21.3 49 0.0011 32.1 1.3 30 3-34 180-211 (288)
500 PF12692 Methyltransf_17: S-ad 21.2 32 0.00069 30.8 -0.0 102 182-286 30-137 (160)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1.6e-102 Score=779.22 Aligned_cols=310 Identities=60% Similarity=1.104 Sum_probs=297.9
Q ss_pred eeeeceecCCceeeEeecccccCCceEEEecCCCCccccccccCCChHHHHHHHHHHHHHHHhhcccccceecceEEEEc
Q 019879 2 VTVSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIAVWQK 81 (334)
Q Consensus 2 ~~v~w~~~~~g~~l~E~dR~LrpgGy~v~s~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cw~~~~~~~~~~iw~K 81 (334)
..|+|+ ++||+||+|||||||||||||||||||| +|++++++++|++|++||++|||++|++++|||||||
T Consensus 190 c~i~W~-~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~~aIwqK 260 (506)
T PF03141_consen 190 CLIPWH-PNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEEEWNAMEDLAKSLCWKKVAEKGDTAIWQK 260 (506)
T ss_pred ccccch-hcccceeehhhhhhccCceEEecCCccc--------ccchHHHHHHHHHHHHHHHHHHHHHheeeCCEEEEec
Confidence 469996 9999999999999999999999999995 5678899999999999999999999999999999999
Q ss_pred cCCCccccc-ccCCCCCCCCC-CCCCCchhhhcCccccccCcc----CCCCccCCCcccccCCCCCccCCCCCCCCcccc
Q 019879 82 KVNDESCRA-RRDDSRANFCK-SSDADDVWYKKMEGCITPYPE----VAGGELKAFPERLYAIPPRISSGSIPGVSAESY 155 (334)
Q Consensus 82 p~~~~~c~~-~~~~~~p~~C~-~~~~d~~wy~~l~~Ci~~~p~----~~~~~~~~wP~Rl~~~p~~l~~~~~~g~~~e~f 155 (334)
|.|| +||. |+..+.||+|+ ++|||++||+||++||+|+|+ .+++.+++||+||+++|+||+++++.|.+++.|
T Consensus 261 p~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F 339 (506)
T PF03141_consen 261 PTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEF 339 (506)
T ss_pred cCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhccCchhhhcCCcCCCCHHHH
Confidence 9997 9999 56669999999 889999999999999999994 578889999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHh-hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhc
Q 019879 156 QEDSNKWKKHVNAYKKINR-LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWC 234 (334)
Q Consensus 156 ~~d~~~W~~~v~~y~~ll~-~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~ 234 (334)
.+|++.|+++|++|+.++. .|+++++||||||++|+|||||+|.++++|||||+|++.. ++|.++++|||||+|||||
T Consensus 340 ~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~-ntL~vIydRGLIG~yhDWC 418 (506)
T PF03141_consen 340 KEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGP-NTLPVIYDRGLIGVYHDWC 418 (506)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEecccCCC-Ccchhhhhcccchhccchh
Confidence 9999999999999998887 7899999999999999999999999999999999999665 9999999999999999999
Q ss_pred ccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEecCCCCCCCC
Q 019879 235 EAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVP 314 (334)
Q Consensus 235 e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~~~~~~~~~ 314 (334)
|+|+|||+|||||||+++|+++.++|+++++|.||||||||||++||+|..+++.+|++++++|||+++++|+|+|++++
T Consensus 419 E~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~ 498 (506)
T PF03141_consen 419 EAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGP 498 (506)
T ss_pred hccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEe
Q 019879 315 EKILVAVK 322 (334)
Q Consensus 315 e~~l~~~K 322 (334)
|++|||||
T Consensus 499 EkiL~~~K 506 (506)
T PF03141_consen 499 EKILICQK 506 (506)
T ss_pred ceEEEEEC
Confidence 99999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.93 E-value=1.5e-26 Score=232.63 Aligned_cols=200 Identities=16% Similarity=0.287 Sum_probs=153.8
Q ss_pred cCccccccCccCCCCccCCCcccccCC------CCCccCCCCCCC------C--ccccchhhhhhHHHHHHHHHHHh-hc
Q 019879 112 KMEGCITPYPEVAGGELKAFPERLYAI------PPRISSGSIPGV------S--AESYQEDSNKWKKHVNAYKKINR-LL 176 (334)
Q Consensus 112 ~l~~Ci~~~p~~~~~~~~~wP~Rl~~~------p~~l~~~~~~g~------~--~e~f~~d~~~W~~~v~~y~~ll~-~l 176 (334)
....|+.|.|.. ...+.+||+....+ .++|++ .++. . .-.|......|...+.+|.+.+. .|
T Consensus 33 ~~~~CLVp~P~g-Yk~P~~WP~SRd~iW~~Nvph~~L~~--~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~ 109 (506)
T PF03141_consen 33 ERLRCLVPPPKG-YKTPIPWPKSRDYIWYANVPHTKLAE--EKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMI 109 (506)
T ss_pred CCCccccCCCcc-CCCCCCCCcccceeeecccCchHHhh--hcccccceeecCCEEEeCCCCccccCCHHHHHHHHHHHh
Confidence 356799999953 55678999987533 444443 1211 1 22577778888888999976544 23
Q ss_pred ----CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhc-ccCCCCC-CccceEEec
Q 019879 177 ----DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWC-EAFSTYP-RTYDLIHAH 250 (334)
Q Consensus 177 ----~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~-e~l~~yp-~sFDlVha~ 250 (334)
..+.+|.+||+|||+|+|+++|+++++.+|.+.+-|.++..+++|.+||+...+.... ..| ||| ++||+|||+
T Consensus 110 ~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rL-Pfp~~~fDmvHcs 188 (506)
T PF03141_consen 110 PLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRL-PFPSNAFDMVHCS 188 (506)
T ss_pred hccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccc-cCCccchhhhhcc
Confidence 5578999999999999999999999999999999999999999999999866544332 344 666 999999999
Q ss_pred hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh----------hhHHHHHHHHhcccceEEEecCCCCCCCCceEEEE
Q 019879 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVA 320 (334)
Q Consensus 251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~----------~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~ 320 (334)
..+...... -..+|.|++|||||||+|+++.++ +.+++|++++++|||+.... +..+.|+
T Consensus 189 rc~i~W~~~--~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~--------~~~~aIw 258 (506)
T PF03141_consen 189 RCLIPWHPN--DGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE--------KGDTAIW 258 (506)
T ss_pred cccccchhc--ccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee--------eCCEEEE
Confidence 777543211 246999999999999999998642 46788999999999998763 3459999
Q ss_pred Eeccc
Q 019879 321 VKQYW 325 (334)
Q Consensus 321 ~K~~w 325 (334)
||+.=
T Consensus 259 qKp~~ 263 (506)
T PF03141_consen 259 QKPTN 263 (506)
T ss_pred eccCC
Confidence 99763
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.72 E-value=2.3e-17 Score=154.45 Aligned_cols=101 Identities=21% Similarity=0.277 Sum_probs=85.3
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc------cchhhhhcccCCCCC-CccceEEechh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAFSTYP-RTYDLIHAHGL 252 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl------i~~~~d~~e~l~~yp-~sFDlVha~~v 252 (334)
++.+|||+|||||.+|..+++... ...|+++|+|++||..+.+|-. +...+..++.+| || +|||+|.+++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fg 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFG 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeeh
Confidence 568999999999999999998632 4689999999999999998843 223455677775 77 99999999999
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
|.++. +++.+|+||+|||||||.+++.+..
T Consensus 129 lrnv~---d~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 129 LRNVT---DIDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred hhcCC---CHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 98765 6899999999999999999998754
No 4
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.71 E-value=2.1e-17 Score=128.23 Aligned_cols=91 Identities=23% Similarity=0.374 Sum_probs=72.3
Q ss_pred eeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc---hhhhhcccCCCCC-CccceEEechhhccccCcC
Q 019879 185 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG---IYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKC 260 (334)
Q Consensus 185 LD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~---~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c 260 (334)
||+|||+|.++..|++++. .+|+++|.++++++.+.++.... ......+.+ +++ ++||+|++.++|+|+ .
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~~---~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHHL---E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-SS-TT-EEEEEEESHGGGS---S
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhC-ccccccccccccccceeec---c
Confidence 8999999999999999822 58999999999999988875322 333334455 566 999999999999997 4
Q ss_pred CHHHHHHHHHHhhcCCeEEEE
Q 019879 261 NIEDILLEMDRILRPEGAIII 281 (334)
Q Consensus 261 ~~~~~L~Em~RVLRPGG~lii 281 (334)
+...+++|+.|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 689999999999999999986
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.68 E-value=8.7e-17 Score=149.89 Aligned_cols=117 Identities=20% Similarity=0.294 Sum_probs=76.2
Q ss_pred hhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----c--cchhhh
Q 019879 159 SNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L--IGIYHD 232 (334)
Q Consensus 159 ~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----l--i~~~~d 232 (334)
.+.|++.+... +...+..+|||+|||||.++..|+++-.....|+++|+|++||+.+.+|. . +.....
T Consensus 32 ~~~wr~~~~~~------~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 32 DRRWRRKLIKL------LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp -----SHHHHH------HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHHhc------cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 35677655432 23334579999999999999999875222347999999999999988762 2 233444
Q ss_pred hcccCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 233 WCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 233 ~~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
.++.+ ||+ ++||+|.|++.|+++. +...+|.||+|||||||.++|-|..
T Consensus 106 da~~l-p~~d~sfD~v~~~fglrn~~---d~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 106 DAEDL-PFPDNSFDAVTCSFGLRNFP---DRERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp BTTB---S-TT-EEEEEEES-GGG-S---SHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CHHHh-cCCCCceeEEEHHhhHHhhC---CHHHHHHHHHHHcCCCeEEEEeecc
Confidence 45666 566 9999999999888764 5889999999999999999998753
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.62 E-value=1.9e-15 Score=142.53 Aligned_cols=100 Identities=18% Similarity=0.127 Sum_probs=79.0
Q ss_pred CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCc---------cchhhhhcccCCCCC-CccceEE
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL---------IGIYHDWCEAFSTYP-RTYDLIH 248 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgl---------i~~~~d~~e~l~~yp-~sFDlVh 248 (334)
...+|||+|||+|.++..|.++ +.. .+|+++|+|++|++.+.+|.. +......++.+ +|+ ++||+|+
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~ 150 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAIT 150 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEE
Confidence 4579999999999999888774 211 379999999999999876521 12223334455 566 8999999
Q ss_pred echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++++++|+. ++..+|.|+.|+|||||.+++.|.
T Consensus 151 ~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 151 MGYGLRNVV---DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred EecccccCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 999998875 578999999999999999999874
No 7
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.60 E-value=1e-14 Score=135.40 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=82.0
Q ss_pred HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCC-CccceEEec
Q 019879 173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAH 250 (334)
Q Consensus 173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp-~sFDlVha~ 250 (334)
+..+......+|||+|||+|.++..|.+.+ ..|+++|+|++|++.+.++.. ........+.+ +++ ++||+|+++
T Consensus 35 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~-~~~~~~fD~V~s~ 110 (251)
T PRK10258 35 LAMLPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESL-PLATATFDLAWSN 110 (251)
T ss_pred HHhcCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccC-cCCCCcEEEEEEC
Confidence 334554456799999999999999998875 369999999999999888753 12222223444 455 899999999
Q ss_pred hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
.++++.. ++..+|.|+.|+|||||.++++..
T Consensus 111 ~~l~~~~---d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 111 LAVQWCG---NLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred chhhhcC---CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8887643 578999999999999999999864
No 8
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.59 E-value=5.5e-15 Score=137.96 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=83.2
Q ss_pred HHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEec
Q 019879 171 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH 250 (334)
Q Consensus 171 ~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~ 250 (334)
.++..+......+|||+|||+|.++..|.++.. ...|+++|+|+.|++.+.++++. ......+.+ +.+++||+|+|+
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~-~~~~d~~~~-~~~~~fD~v~~~ 96 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVD-ARTGDVRDW-KPKPDTDVVVSN 96 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCc-EEEcChhhC-CCCCCceEEEEe
Confidence 355555555568999999999999999988621 24699999999999999887642 222223333 223899999999
Q ss_pred hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
.+|+|++ +...++.++.|+|||||.+++..
T Consensus 97 ~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 97 AALQWVP---EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhhhhCC---CHHHHHHHHHHhCCCCcEEEEEc
Confidence 9999975 46899999999999999999974
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.57 E-value=7.6e-15 Score=143.01 Aligned_cols=100 Identities=13% Similarity=0.160 Sum_probs=79.6
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----c---cchhhhhcccCCCCCCccceEEechh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L---IGIYHDWCEAFSTYPRTYDLIHAHGL 252 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----l---i~~~~d~~e~l~~yp~sFDlVha~~v 252 (334)
...+|||+|||+|.++..|++.+ .+|+++|.++.|++.++++. + +...+..++.++..+++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 34689999999999999998876 47999999999999887652 1 12222333455433389999999999
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
|+|+. +...+|.|+.|+|||||.+++.+..
T Consensus 208 LeHv~---d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 208 IEHVA---NPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred HHhcC---CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99986 4789999999999999999998754
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.56 E-value=3.5e-15 Score=126.89 Aligned_cols=97 Identities=22% Similarity=0.400 Sum_probs=76.7
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhcccc
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYK 257 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~ 257 (334)
....+|||+|||+|.++..|.+.+. .++++|+++.+++. +.......+ ...+.++ ++||+|+|+.+|+|++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGSS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhcc
Confidence 3457999999999999999988875 79999999888877 221111110 1122334 9999999999999986
Q ss_pred CcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879 258 DKCNIEDILLEMDRILRPEGAIIIRDEVD 286 (334)
Q Consensus 258 ~~c~~~~~L~Em~RVLRPGG~lii~D~~~ 286 (334)
++..+|.++.|+|||||++++.+...
T Consensus 93 ---d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 93 ---DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ---HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ---cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 48999999999999999999998753
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.53 E-value=2.1e-14 Score=116.10 Aligned_cols=101 Identities=19% Similarity=0.279 Sum_probs=74.6
Q ss_pred CceEeeecccccHHHHHHHh--CCCcEEEEEeccCChhhHHHHHHcC----ccchhhhhcccC---CCCCCccceEEech
Q 019879 181 YRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAF---STYPRTYDLIHAHG 251 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~--~~v~v~nVv~vD~s~~~L~~a~~Rg----li~~~~d~~e~l---~~yp~sFDlVha~~ 251 (334)
..+|||+|||+|.++..|++ .+ ..|+++|.++.|++.+.++- ......-.+.++ ......||+|++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPG---ARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTT---SEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCC---CEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 36899999999999999998 55 36999999999999887763 211111111222 33447899999998
Q ss_pred -hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 252 -LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 252 -vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
.++++.+..+...++.++.+.|||||++++++.
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 445443334567899999999999999999863
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.52 E-value=5.2e-14 Score=131.56 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=80.3
Q ss_pred HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCC-Cc
Q 019879 172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYP-RT 243 (334)
Q Consensus 172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp-~s 243 (334)
++..+. ....+|||+|||+|.++..|++.+ .+|+++|+|++|++.+.++ |+. ...+...+.+++++ ++
T Consensus 37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~ 112 (255)
T PRK11036 37 LLAELP-PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETP 112 (255)
T ss_pred HHHhcC-CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCC
Confidence 344343 345799999999999999999986 4799999999999988765 321 12222223344444 89
Q ss_pred cceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 244 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 244 FDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
||+|+|+.+|+|+. ++..+|.++.|+|||||.+++..
T Consensus 113 fD~V~~~~vl~~~~---~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 113 VDLILFHAVLEWVA---DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred CCEEEehhHHHhhC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 99999999999875 46799999999999999998864
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.52 E-value=7.4e-14 Score=136.48 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=77.3
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCC-CccceEEec
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYP-RTYDLIHAH 250 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp-~sFDlVha~ 250 (334)
....+|||+|||+|.++..|+++. ..+|+++|+|+.|++.+.++ |+. ......++.+ +|+ ++||+|++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEEEC
Confidence 345789999999999999998852 24799999999999876553 432 2222223333 466 999999999
Q ss_pred hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
.+++|+. +...+|.|+.|+|||||.|+|.+
T Consensus 194 ~~~~h~~---d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMP---DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999875 46899999999999999999975
No 14
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.52 E-value=4.3e-13 Score=121.34 Aligned_cols=152 Identities=14% Similarity=0.272 Sum_probs=103.7
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhh
Q 019879 160 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDW 233 (334)
Q Consensus 160 ~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~ 233 (334)
..|++.+-.-..+...++. ..+|||+|||+|.++..++... ....|+++|.++.|++.+.++ ++ +...+..
T Consensus 27 ~~~~~~~~d~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d 103 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPG--GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGR 103 (187)
T ss_pred HHHHHHHHHHHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 4677777443323333443 5789999999999888887531 124799999999999876543 33 2223333
Q ss_pred cccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEE-Eec-CCCCC
Q 019879 234 CEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK-MVD-HEDGP 311 (334)
Q Consensus 234 ~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~-~~~-~~~~~ 311 (334)
++.+.. +++||+|+|+.+ .+++.++.++.|+|||||.+++.+.......+..+...+.|.+. .+. +..|-
T Consensus 104 ~~~~~~-~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (187)
T PRK00107 104 AEEFGQ-EEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGL 175 (187)
T ss_pred HhhCCC-CCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCC
Confidence 344433 579999999742 34788999999999999999999888777888899898899854 222 23333
Q ss_pred CCCceEEEEEe
Q 019879 312 LVPEKILVAVK 322 (334)
Q Consensus 312 ~~~e~~l~~~K 322 (334)
.+.-.+.|-||
T Consensus 176 ~~~~~~~~~~~ 186 (187)
T PRK00107 176 DGERHLVIIRK 186 (187)
T ss_pred CCcEEEEEEec
Confidence 23334455555
No 15
>PRK05785 hypothetical protein; Provisional
Probab=99.51 E-value=1.1e-13 Score=128.01 Aligned_cols=94 Identities=19% Similarity=0.231 Sum_probs=74.5
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhccccCc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDK 259 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~ 259 (334)
..+|||+|||||.++..|++.. ..+|+++|.|++|++.+.++.- ..+..++.+ ||+ ++||+|+++.+++|+.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~--~~~~d~~~l-p~~d~sfD~v~~~~~l~~~~-- 124 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADD--KVVGSFEAL-PFRDKSFDVVMSSFALHASD-- 124 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccc--eEEechhhC-CCCCCCEEEEEecChhhccC--
Confidence 4799999999999999998863 1479999999999999887642 233344565 566 9999999999998754
Q ss_pred CCHHHHHHHHHHhhcCCe-EEEEE
Q 019879 260 CNIEDILLEMDRILRPEG-AIIIR 282 (334)
Q Consensus 260 c~~~~~L~Em~RVLRPGG-~lii~ 282 (334)
+++.+|+||+|||||.+ .+.++
T Consensus 125 -d~~~~l~e~~RvLkp~~~ile~~ 147 (226)
T PRK05785 125 -NIEKVIAEFTRVSRKQVGFIAMG 147 (226)
T ss_pred -CHHHHHHHHHHHhcCceEEEEeC
Confidence 58999999999999964 33343
No 16
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.50 E-value=9.8e-14 Score=125.30 Aligned_cols=97 Identities=18% Similarity=0.258 Sum_probs=73.4
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc-ch-hhhhcccCCCCCCccceEEechhh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GI-YHDWCEAFSTYPRTYDLIHAHGLF 253 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli-~~-~~d~~e~l~~yp~sFDlVha~~vf 253 (334)
...+|||+|||+|.++..|++++ ..|+++|+|+.|++.+.++ ++. .. ..+ ... .+++++||+|+++.+|
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d-~~~-~~~~~~fD~I~~~~~~ 104 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYD-INA-AALNEDYDFIFSTVVF 104 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEecc-chh-ccccCCCCEEEEeccc
Confidence 35799999999999999999876 3699999999999876543 331 11 111 111 2345789999999999
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
+|+. ..+...++.+++|+|||||++++.
T Consensus 105 ~~~~-~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 105 MFLQ-AGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ccCC-HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 8864 345789999999999999986554
No 17
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.49 E-value=1.2e-13 Score=130.46 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=81.3
Q ss_pred HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----cchhhhhcccCCCCC-Cccce
Q 019879 172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYP-RTYDL 246 (334)
Q Consensus 172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----i~~~~d~~e~l~~yp-~sFDl 246 (334)
++..+.-....+|||+|||+|.++..|+... ...|+++|+|++|+..+.++.. +......+.. .+|+ ++||+
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~-~~~~~~~FD~ 120 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILK-KDFPENTFDM 120 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCccc-CCCCCCCeEE
Confidence 3444444455799999999999998887642 2479999999999998887632 1122211222 2566 89999
Q ss_pred EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
|++..++.|.. ..+...+|+++.|+|||||.|++.|.
T Consensus 121 V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 121 IYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99998888864 23678999999999999999999875
No 18
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.48 E-value=2e-13 Score=128.43 Aligned_cols=122 Identities=19% Similarity=0.188 Sum_probs=89.4
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCC-----CcEEEEEeccCChhhHHHHHHcC----ccc-----hhhhhcccCCCCC
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSK-----LWVMNVVPTLADKNTLGVIYERG----LIG-----IYHDWCEAFSTYP 241 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~-----v~v~nVv~vD~s~~~L~~a~~Rg----li~-----~~~d~~e~l~~yp 241 (334)
+.+....+||||+||||-.|-.+.+.- -...+|+..|++++||.++.+|. +-. .....+|++| ||
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fd 174 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FD 174 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CC
Confidence 344566899999999999988887742 12268999999999999887774 311 1223456775 88
Q ss_pred -CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhH-HHHHHHHhcccce
Q 019879 242 -RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEI-IKVKKIVGGMRWD 301 (334)
Q Consensus 242 -~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~~~~~l~W~ 301 (334)
++||+.+..+-+ .+..+++++|+|++|||||||.|.+-+...+- +-|+.+++.--.+
T Consensus 175 d~s~D~yTiafGI---RN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 175 DDSFDAYTIAFGI---RNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred CCcceeEEEecce---ecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 999999887544 44557999999999999999999998865532 4555555544333
No 19
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=1.6e-13 Score=124.11 Aligned_cols=97 Identities=16% Similarity=0.271 Sum_probs=73.4
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCC--CCCCccceEEechhh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS--TYPRTYDLIHAHGLF 253 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~--~yp~sFDlVha~~vf 253 (334)
...+|||+|||+|.++..|++++. +|+++|.|+.|++.+.++ ++.. ....+.++. +++++||+|+|+.+|
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEEEEecch
Confidence 457999999999999999999863 799999999999876543 3311 111112222 345789999999999
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIII 281 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii 281 (334)
+|+. ..+...++.++.|+|||||++++
T Consensus 106 ~~~~-~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 106 MFLE-AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhCC-HHHHHHHHHHHHHHcCCCcEEEE
Confidence 8764 34678999999999999999655
No 20
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.47 E-value=2.5e-13 Score=124.10 Aligned_cols=105 Identities=16% Similarity=0.246 Sum_probs=78.1
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC-CccceEE
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP-RTYDLIH 248 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp-~sFDlVh 248 (334)
+......+|||+|||+|.++..|++.-....+|+++|.+++|++.+.++ ++ +...+..++.+ +++ ++||+|+
T Consensus 41 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~ 119 (231)
T TIGR02752 41 MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVT 119 (231)
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEE
Confidence 3333457999999999999999987411124799999999999877654 22 12222223333 456 8999999
Q ss_pred echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++.+++|+. +...+|.|+.|+|||||.+++.+.
T Consensus 120 ~~~~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 120 IGFGLRNVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred EecccccCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 998888764 467899999999999999999764
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.46 E-value=4e-13 Score=130.61 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=82.6
Q ss_pred cchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH--c--Cc---c
Q 019879 155 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--R--GL---I 227 (334)
Q Consensus 155 f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~--R--gl---i 227 (334)
|.-++ .|+..+. |..++..+.....++|||+|||+|.++..++..+.. .|+++|.|+.|+..+.. + +. +
T Consensus 98 ~~~~~-e~~s~~~-~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v 173 (314)
T TIGR00452 98 IKIDS-EWRSDIK-WDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRA 173 (314)
T ss_pred ccCCH-HHHHHHH-HHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCe
Confidence 43333 3544443 222444444455689999999999999998887642 58999999888864321 1 11 1
Q ss_pred chhhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 228 GIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 228 ~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
.....-.+.++ ...+||+|+|+.+++|.. ++..+|.|++|+|||||.|++.+
T Consensus 174 ~~~~~~ie~lp-~~~~FD~V~s~gvL~H~~---dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 174 ILEPLGIEQLH-ELYAFDTVFSMGVLYHRK---SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEECCHHHCC-CCCCcCEEEEcchhhccC---CHHHHHHHHHHhcCCCCEEEEEE
Confidence 11111123343 346899999999999964 57899999999999999999864
No 22
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.46 E-value=2.9e-13 Score=131.70 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=77.5
Q ss_pred HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH--c--Cc---cchhhhhcccCCCCCCccc
Q 019879 173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--R--GL---IGIYHDWCEAFSTYPRTYD 245 (334)
Q Consensus 173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~--R--gl---i~~~~d~~e~l~~yp~sFD 245 (334)
+..++....++|||+|||+|.++..|+..+.. .|+++|.|+.|+..+.. + +. +.......+.++. +++||
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD 191 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFD 191 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcC
Confidence 33444445589999999999999999987642 49999999888764321 1 11 1122222344543 78999
Q ss_pred eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
+|+|..+++|.. ++..+|.+++|+|||||.+++.+
T Consensus 192 ~V~s~~vl~H~~---dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 192 TVFSMGVLYHRR---SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred EEEECChhhccC---CHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999864 57899999999999999999864
No 23
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.46 E-value=6.5e-13 Score=126.67 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=84.3
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCC--CCCCccceEEechhhc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS--TYPRTYDLIHAHGLFS 254 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~--~yp~sFDlVha~~vfs 254 (334)
..+|||+|||+|.++..|++++ .+|+++|.|+.+++.+.++ ++ . ....+.++. .++++||+|+++.+|+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLM 195 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhh
Confidence 4689999999999999999887 3799999999998876543 43 1 111111221 2368999999999998
Q ss_pred cccCcCCHHHHHHHHHHhhcCCeEEEEEe---Ch--------h---hHHHHHHHHhcccceEEEe
Q 019879 255 LYKDKCNIEDILLEMDRILRPEGAIIIRD---EV--------D---EIIKVKKIVGGMRWDTKMV 305 (334)
Q Consensus 255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D---~~--------~---~~~~i~~~~~~l~W~~~~~ 305 (334)
|+. ..++..++.+|.|+|||||++++.. .. . .-.++++.+.. |++..+
T Consensus 196 ~l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 196 FLN-RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred hCC-HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 874 3567899999999999999966532 10 1 12456666665 887765
No 24
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.45 E-value=2.4e-14 Score=114.32 Aligned_cols=91 Identities=22% Similarity=0.265 Sum_probs=56.7
Q ss_pred eeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhccc-CCCCC-CccceEEechhhccc
Q 019879 185 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEA-FSTYP-RTYDLIHAHGLFSLY 256 (334)
Q Consensus 185 LD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~-l~~yp-~sFDlVha~~vfs~~ 256 (334)
||+|||+|.++..|+++. ....++++|+|+.|++.+++| +.. ........+ +...+ ++||+|+++.+|+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998863 347899999999999655544 110 011100111 12223 699999999999998
Q ss_pred cCcCCHHHHHHHHHHhhcCCeEE
Q 019879 257 KDKCNIEDILLEMDRILRPEGAI 279 (334)
Q Consensus 257 ~~~c~~~~~L~Em~RVLRPGG~l 279 (334)
.++..+++.+.++|||||.|
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 46899999999999999986
No 25
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.43 E-value=6.1e-13 Score=123.80 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=79.6
Q ss_pred HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCCCccceEEec
Q 019879 172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAH 250 (334)
Q Consensus 172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp~sFDlVha~ 250 (334)
++..+......+|||+|||+|.++..|++.. -..+|+++|.|+.|+..+.++.- +.......+.+ ..+++||+|+|+
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~ 100 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASW-QPPQALDLIFAN 100 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhcc-CCCCCccEEEEc
Confidence 4444444456899999999999999998752 12479999999999998877631 11222112222 223799999999
Q ss_pred hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
.+|+|+. +...+|.++.|+|||||.+++..
T Consensus 101 ~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 101 ASLQWLP---DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cChhhCC---CHHHHHHHHHHhcCCCcEEEEEC
Confidence 9999875 46899999999999999999964
No 26
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.43 E-value=3.2e-13 Score=126.09 Aligned_cols=103 Identities=7% Similarity=0.091 Sum_probs=75.5
Q ss_pred CceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCC-CccceEEechhhc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLFS 254 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp-~sFDlVha~~vfs 254 (334)
..+|||+|||+|.++..|++. ..-...|+++|.|++|++.+.++ ++.....-.+.++..++ ..||+|+++.+++
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~ 136 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 136 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHH
Confidence 478999999999998888762 11124799999999999988775 22111111122232334 5699999999999
Q ss_pred cccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 255 LYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
|+.+ .+...++.+++|+|||||.|++.|.
T Consensus 137 ~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 137 FLEP-SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 8753 4467899999999999999999974
No 27
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.42 E-value=4.4e-13 Score=125.19 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=80.7
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc-----hhhhhcccCCCCC-CccceEEechhh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG-----IYHDWCEAFSTYP-RTYDLIHAHGLF 253 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~-----~~~d~~e~l~~yp-~sFDlVha~~vf 253 (334)
...+|||+|||-|.++..|++.| .+|+++|+++.+++.|..+.+.. ....-.|++. .. ++||+|+|.-|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVl 134 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHH
Confidence 45799999999999999999998 47999999999999988654321 1111123332 33 799999999999
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD 286 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~ 286 (334)
+|+++ ++.+++++.+.+||||.+++++..+
T Consensus 135 EHv~d---p~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 135 EHVPD---PESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred HccCC---HHHHHHHHHHHcCCCcEEEEecccc
Confidence 99874 7889999999999999999998654
No 28
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.42 E-value=2.6e-12 Score=116.09 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=77.6
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc--cchhhhhcccCCCCCCccceEEechhhccccC
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 258 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl--i~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~ 258 (334)
..+|||+|||+|.++..|++.+.. ..++++|.++.++..+.++.. +.......+.++..+++||+|+++++++|..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~- 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD- 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc-
Confidence 468999999999999999886432 358999999999988877642 1122222334433348999999999999864
Q ss_pred cCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 259 KCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 259 ~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++..+|.++.|+|||||.+++.+.
T Consensus 113 --~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 113 --DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred --CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 478999999999999999999864
No 29
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.41 E-value=4.5e-13 Score=123.82 Aligned_cols=104 Identities=8% Similarity=0.090 Sum_probs=76.0
Q ss_pred CCceEeeecccccHHHHHHHhCC-CcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCC-CccceEEechhh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLF 253 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~-v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp-~sFDlVha~~vf 253 (334)
...+|||+|||+|.++..|+++. ....+++++|.|++|+..+.++ +......-.+.++..++ ..||+|++++++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l 132 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 132 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence 34689999999999998887741 1124799999999999988765 11101111112222333 569999999999
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
+|+.+ .+...+|.+++|+|||||.|+++|.
T Consensus 133 ~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 133 QFLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 98752 3567999999999999999999985
No 30
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.41 E-value=1.4e-12 Score=123.57 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=89.3
Q ss_pred ccccchhhhhhHHHHHHHHH-HHhhcCCCCCceEeeecccccH----HHHHHHhCC----CcEEEEEeccCChhhHHHHH
Q 019879 152 AESYQEDSNKWKKHVNAYKK-INRLLDSGRYRNIMDMNAGFGG----FAAAIQSSK----LWVMNVVPTLADKNTLGVIY 222 (334)
Q Consensus 152 ~e~f~~d~~~W~~~v~~y~~-ll~~l~~~~~r~VLD~GCG~G~----faa~L~~~~----v~v~nVv~vD~s~~~L~~a~ 222 (334)
...|-.|...|......... ++.........+|+|+|||+|. +|..|.+.. .+...|+++|+|+.||+.|.
T Consensus 70 ~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 70 ETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 34677777888776655322 2222222345799999999996 555565532 12457999999999999887
Q ss_pred HcC--------cc-------------------------c-hhhhhcccCCCCC-CccceEEechhhccccCcCCHHHHHH
Q 019879 223 ERG--------LI-------------------------G-IYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILL 267 (334)
Q Consensus 223 ~Rg--------li-------------------------~-~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~ 267 (334)
+.- +. . ..+|..+ ++++ ++||+|+|.++|+|+. ..+...++.
T Consensus 150 ~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~ 226 (264)
T smart00138 150 AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFD-EPTQRKLLN 226 (264)
T ss_pred cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCC-HHHHHHHHH
Confidence 531 00 0 0122222 2344 8999999999999885 345678999
Q ss_pred HHHHhhcCCeEEEEEeCh
Q 019879 268 EMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 268 Em~RVLRPGG~lii~D~~ 285 (334)
+++|+|+|||+|++....
T Consensus 227 ~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 227 RFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHhCCCeEEEEECcc
Confidence 999999999999997653
No 31
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.40 E-value=9.5e-13 Score=133.16 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=77.4
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC--c---cchhhhhcccCCCCC-CccceEEechh
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--L---IGIYHDWCEAFSTYP-RTYDLIHAHGL 252 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg--l---i~~~~d~~e~l~~yp-~sFDlVha~~v 252 (334)
....+|||+|||+|.++..|++.. ..+|+++|+|+.++..+.++. + +......+.. .+++ ++||+|+|..+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTK-KTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCccc-CCCCCCCEEEEEECCc
Confidence 345799999999999998888753 247999999999999887652 2 1121111222 3466 89999999999
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++|+. +.+.+|.|++|+|||||.+++.|.
T Consensus 342 l~h~~---d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 342 ILHIQ---DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ccccC---CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 99975 478999999999999999999863
No 32
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.39 E-value=9.2e-13 Score=113.43 Aligned_cols=102 Identities=20% Similarity=0.370 Sum_probs=76.8
Q ss_pred CCceEeeecccccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCC-CCCccceEEech
Q 019879 180 RYRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFST-YPRTYDLIHAHG 251 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~-yp~sFDlVha~~ 251 (334)
+..+|||+|||+|.++..|++ .+. ..+++++|.+++|++.+..+ ++. ...+...+.++. +++.||+|+++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 347899999999999999994 221 24699999999999988774 432 222222222321 448999999999
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
+++|+. +...+|+++.|.|+|||.+++.+..
T Consensus 82 ~l~~~~---~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFP---DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTS---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhcc---CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 998764 4678999999999999999999876
No 33
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.39 E-value=1.8e-13 Score=110.17 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=66.4
Q ss_pred EeeecccccHHHHHHHhCC--CcEEEEEeccCChhhHHHHHHcC----c-cchhhhhcccCCCCCCccceEEec-hhhcc
Q 019879 184 IMDMNAGFGGFAAAIQSSK--LWVMNVVPTLADKNTLGVIYERG----L-IGIYHDWCEAFSTYPRTYDLIHAH-GLFSL 255 (334)
Q Consensus 184 VLD~GCG~G~faa~L~~~~--v~v~nVv~vD~s~~~L~~a~~Rg----l-i~~~~d~~e~l~~yp~sFDlVha~-~vfs~ 255 (334)
|||+|||+|..+..+.+.. .....++++|++++|+..++++. . +..++..++.++...++||+|+|+ .+|+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998752 11157999999999999988875 2 122332233333233899999995 55888
Q ss_pred ccCcCCHHHHHHHHHHhhcCCe
Q 019879 256 YKDKCNIEDILLEMDRILRPEG 277 (334)
Q Consensus 256 ~~~~c~~~~~L~Em~RVLRPGG 277 (334)
+. ..+++.+|.++.++|||||
T Consensus 81 ~~-~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LS-PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SS-HHHHHHHHHHHHHTEEEEE
T ss_pred CC-HHHHHHHHHHHHHHhCCCC
Confidence 64 4678999999999999998
No 34
>PRK08317 hypothetical protein; Provisional
Probab=99.38 E-value=2.9e-12 Score=115.46 Aligned_cols=104 Identities=21% Similarity=0.345 Sum_probs=78.1
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc--Cc---cchhhhhcccCCCCC-CccceEEe
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--GL---IGIYHDWCEAFSTYP-RTYDLIHA 249 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R--gl---i~~~~d~~e~l~~yp-~sFDlVha 249 (334)
+......+|||+|||+|.++..+++......+++++|.++.++..+.++ +. +.......+.+ +++ ++||+|++
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~ 93 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL-PFPDGSFDAVRS 93 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC-CCCCCCceEEEE
Confidence 3444457999999999999999887521124799999999999988776 11 11111111222 355 89999999
Q ss_pred chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
..+|+|+. +...++.++.++|||||.+++.+
T Consensus 94 ~~~~~~~~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 94 DRVLQHLE---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred echhhccC---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 99999875 47899999999999999999875
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.38 E-value=1.6e-12 Score=124.03 Aligned_cols=108 Identities=18% Similarity=0.313 Sum_probs=74.5
Q ss_pred HHhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHH----HcCccchhhhhcccCCCCCCccce
Q 019879 172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIY----ERGLIGIYHDWCEAFSTYPRTYDL 246 (334)
Q Consensus 172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~----~Rgli~~~~d~~e~l~~yp~sFDl 246 (334)
++..+.-....+|||+|||.|+++.+++++ | .+|+++.+|+++.+.+. ++|+.....-.+.++..++.+||.
T Consensus 54 ~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g---~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~ 130 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG---CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDR 130 (273)
T ss_dssp HHTTTT--TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SE
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC---cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCE
Confidence 444334345589999999999999999997 6 47899999999888665 446533222222333345579999
Q ss_pred EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
|++-.+|+|+. ..+...++.+++|+|||||.+++..
T Consensus 131 IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 131 IVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999999985 3568899999999999999999864
No 36
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.38 E-value=3.2e-12 Score=120.81 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=72.8
Q ss_pred CCceEeeecccccHHHHHHHhCCC--cEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCC-CccceEEechhhcc
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKL--WVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAHGLFSL 255 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v--~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp-~sFDlVha~~vfs~ 255 (334)
...+|||+|||+|.++..|++... ....|+++|+|+.|+..|.++.. +.......+.+ |++ ++||+|++.. .
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~l-p~~~~sfD~I~~~~--~- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRL-PFADQSLDAIIRIY--A- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccC-CCcCCceeEEEEec--C-
Confidence 346899999999999999876421 11368999999999999887642 22222222344 566 8999999852 2
Q ss_pred ccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHH
Q 019879 256 YKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKI 294 (334)
Q Consensus 256 ~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~ 294 (334)
...+.|+.|+|||||+|++..+.. .+.+++..
T Consensus 161 -------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 -------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred -------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 124689999999999999987643 34444443
No 37
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.37 E-value=2.5e-12 Score=127.99 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=79.5
Q ss_pred HHhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEec
Q 019879 172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH 250 (334)
Q Consensus 172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~ 250 (334)
++..+.-....+|||+|||+|+++..+++. + ..|+++|+|+++++.+.++.--....-.+.+....+++||+|++.
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g---~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~ 235 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG---VSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSV 235 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEe
Confidence 333344344579999999999999999875 4 369999999999999887641000110111222235899999999
Q ss_pred hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
.+|+|+.. .+...++.++.|+|||||.+++.+
T Consensus 236 ~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 236 GMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99998742 356789999999999999999975
No 38
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.37 E-value=1.7e-12 Score=118.02 Aligned_cols=98 Identities=20% Similarity=0.349 Sum_probs=74.8
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCCCccceEEechhhc
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYPRTYDLIHAHGLFS 254 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp~sFDlVha~~vfs 254 (334)
++|||+|||+|.++..+++... ..+|+++|+|++++..+.++ |+. .......+.. +++++||+|++..+|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~~~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-PFPDTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-CCCCCCCEeehHHHHH
Confidence 3799999999999999887531 14789999999998877664 332 1221111121 4568999999999999
Q ss_pred cccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 255 LYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
|+. +...+|.++.|+|||||++++.+.
T Consensus 79 ~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 79 HIK---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hCC---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 975 468999999999999999999874
No 39
>PRK06202 hypothetical protein; Provisional
Probab=99.36 E-value=4.7e-12 Score=116.54 Aligned_cols=105 Identities=12% Similarity=0.251 Sum_probs=76.3
Q ss_pred CCCCCceEeeecccccHHHHHHHh----CCCcEEEEEeccCChhhHHHHHHcCc---cchhhhhcccCCCCCCccceEEe
Q 019879 177 DSGRYRNIMDMNAGFGGFAAAIQS----SKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTYPRTYDLIHA 249 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~faa~L~~----~~v~v~nVv~vD~s~~~L~~a~~Rgl---i~~~~d~~e~l~~yp~sFDlVha 249 (334)
...+..+|||+|||+|.++..|++ .+. ..+|+++|.+++|++.+.++.. +......++.++.-+++||+|+|
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEE
Confidence 334567999999999999888764 232 2479999999999999887632 11111123344432389999999
Q ss_pred chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
+.+|+|+.+ .++..+|+||.|++| |.+++.|..
T Consensus 136 ~~~lhh~~d-~~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 136 NHFLHHLDD-AEVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred CCeeecCCh-HHHHHHHHHHHHhcC--eeEEEeccc
Confidence 999999864 246789999999999 667777654
No 40
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.36 E-value=2.5e-12 Score=120.91 Aligned_cols=99 Identities=19% Similarity=0.209 Sum_probs=73.6
Q ss_pred CceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC-CccceEEechh
Q 019879 181 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP-RTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp-~sFDlVha~~v 252 (334)
..+|||+|||+|..+..++.. +. ...|+++|.++.|++.+.++ |+ +.......+.+ +++ ++||+|+++.+
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-PVADNSVDVIISNCV 155 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-CCCCCceeEEEEcCc
Confidence 479999999999876655543 21 13699999999999988765 22 11112222333 455 89999999999
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++|.. +...++.|+.|+|||||.|++.+.
T Consensus 156 ~~~~~---d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 156 INLSP---DKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred ccCCC---CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 98764 467899999999999999999763
No 41
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.34 E-value=3.7e-12 Score=115.68 Aligned_cols=101 Identities=18% Similarity=0.341 Sum_probs=84.5
Q ss_pred HhhcCCCCCceEeeecccccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEec
Q 019879 173 NRLLDSGRYRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAH 250 (334)
Q Consensus 173 l~~l~~~~~r~VLD~GCG~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~ 250 (334)
...|+++ .+|||+|||.|.+.++|.+ +++ ...|++++++.+..+.+||+.....|.-+.+..|| ++||.|+.+
T Consensus 8 ~~~I~pg--srVLDLGCGdG~LL~~L~~~k~v---~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 8 AEWIEPG--SRVLDLGCGDGELLAYLKDEKQV---DGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred HHHcCCC--CEEEecCCCchHHHHHHHHhcCC---eEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehH
Confidence 3356654 8999999999999999998 453 57999999999999999999777777778888899 999999999
Q ss_pred hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
.++.++. .++.+|.||-|| |...|++=+
T Consensus 83 qtLQ~~~---~P~~vL~EmlRV---gr~~IVsFP 110 (193)
T PF07021_consen 83 QTLQAVR---RPDEVLEEMLRV---GRRAIVSFP 110 (193)
T ss_pred hHHHhHh---HHHHHHHHHHHh---cCeEEEEec
Confidence 9999875 378999999777 667777743
No 42
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.33 E-value=1.8e-11 Score=111.67 Aligned_cols=143 Identities=17% Similarity=0.231 Sum_probs=96.8
Q ss_pred hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhc-ccCCC-CC-CccceEEech
Q 019879 175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWC-EAFST-YP-RTYDLIHAHG 251 (334)
Q Consensus 175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~-e~l~~-yp-~sFDlVha~~ 251 (334)
.|....++++|++|||.|.|...|+.+. -.++.+|+|+..++.+++|---.....|. .++|. .| ++|||||++-
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 4788889999999999999999999873 57999999999999999883210111111 22333 45 9999999999
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh----------hHHHHHHHHhcccceEEEecCCCCCCCCceEEEEE
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAV 321 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~----------~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~ 321 (334)
|+.++.+..++..++..+...|+|||.|++.+..+ -.+.|.++++..-=++....- +|....|.-|+++
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVEC-RGGSPNEDCLLAR 193 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEE-E-SSTTSEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEE-cCCCCCCceEeee
Confidence 99988765678899999999999999999976432 234555565555545543222 2333567777775
No 43
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.33 E-value=7.1e-12 Score=114.52 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=74.7
Q ss_pred CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCC-CccceEEechhhccc
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAHGLFSLY 256 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp-~sFDlVha~~vfs~~ 256 (334)
+..+|||+|||+|.++..|.+. +. .+++++|+|++|++.+.++.. +...+..+ +.+++ ++||+|+++.+|+|+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~--~~~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSL--FDPFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeec--cCCCCCCCEEEEEECChhhhC
Confidence 3468999999999999999875 22 479999999999999887521 12222111 22566 899999999999998
Q ss_pred cCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 257 KDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 257 ~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
. ..++..++.|++|++ ++++++.+
T Consensus 119 ~-p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 119 N-PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred C-HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 5 456889999999998 57888865
No 44
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.31 E-value=2.8e-11 Score=107.17 Aligned_cols=120 Identities=14% Similarity=0.201 Sum_probs=86.4
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCCCccceEEechhhcc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSL 255 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp~sFDlVha~~vfs~ 255 (334)
..+|||+|||+|.++..+...+. .|+++|.+++|++.+.++ +. +..+.. +.+...+++||+|+++..+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~--d~~~~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMT--DLFKGVRGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEc--ccccccCCcccEEEECCCCCC
Confidence 36899999999999999998764 699999999999877654 21 111111 111122479999999977765
Q ss_pred ccCc------------------CCHHHHHHHHHHhhcCCeEEEEEeChhh-HHHHHHHHhcccceEEEe
Q 019879 256 YKDK------------------CNIEDILLEMDRILRPEGAIIIRDEVDE-IIKVKKIVGGMRWDTKMV 305 (334)
Q Consensus 256 ~~~~------------------c~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~~~~~l~W~~~~~ 305 (334)
..+. ..++.++.++.|+|||||.+++.+.... ...+.+.++...+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 4321 0146789999999999999999876543 566677777778877654
No 45
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.31 E-value=8.8e-12 Score=113.52 Aligned_cols=101 Identities=22% Similarity=0.286 Sum_probs=73.7
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHH----HHHcCcc-ch-hhhhcccCCCCCCccceEEe
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV----IYERGLI-GI-YHDWCEAFSTYPRTYDLIHA 249 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~----a~~Rgli-~~-~~d~~e~l~~yp~sFDlVha 249 (334)
++..+..++||+|||.|..+.+|+++|. +|+++|.|+..++. |.++++. .. ..|. +.+ .+++.||+|++
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl-~~~-~~~~~yD~I~s 100 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADL-NDF-DFPEEYDFIVS 100 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG-CCB-S-TTTEEEEEE
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecc-hhc-cccCCcCEEEE
Confidence 3333457999999999999999999994 69999999877763 3445652 11 2222 122 24589999999
Q ss_pred chhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
..||.|+. +..+..++..|..-++|||++++-
T Consensus 101 t~v~~fL~-~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 101 TVVFMFLQ-RELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp ESSGGGS--GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEeccCC-HHHHHHHHHHHHhhcCCcEEEEEE
Confidence 98998875 567889999999999999998884
No 46
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.30 E-value=1.8e-11 Score=109.87 Aligned_cols=108 Identities=13% Similarity=0.240 Sum_probs=76.0
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH----cCc--cchhhhhcccCCCCCCccceEEechhhc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFS 254 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~----Rgl--i~~~~d~~e~l~~yp~sFDlVha~~vfs 254 (334)
..+|||+|||+|.++..|+.... ...|+++|.+++|++.+.+ .|+ +.......+.+ ..+++||+|+|+. ++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~-~~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF-QHEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc-cccCCccEEEehh-hh
Confidence 57999999999998888765321 1469999999998876543 243 22222223333 2348999999975 32
Q ss_pred cccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhc
Q 019879 255 LYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGG 297 (334)
Q Consensus 255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~ 297 (334)
++..++.++.|+|||||.+++........++..+.++
T Consensus 120 ------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 120 ------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRK 156 (181)
T ss_pred ------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHh
Confidence 3567899999999999999999876655555555444
No 47
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.29 E-value=8.2e-12 Score=126.39 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=80.4
Q ss_pred HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-c---cchhh-hhcccCCCCC-Cccc
Q 019879 172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L---IGIYH-DWCEAFSTYP-RTYD 245 (334)
Q Consensus 172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-l---i~~~~-d~~e~l~~yp-~sFD 245 (334)
++..+......+|||+|||+|.++..|++.. ..|+++|.++.|+..+.++. . +.... +......+++ ++||
T Consensus 29 il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD 105 (475)
T PLN02336 29 ILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVD 105 (475)
T ss_pred HHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEE
Confidence 3344444445789999999999999999874 36899999999998765432 1 11111 1111112466 8999
Q ss_pred eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
+|+|+.+++|+.+ .++..+|.+++|+|||||++++.|.
T Consensus 106 ~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 106 LIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred EEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEec
Confidence 9999999999864 3468999999999999999999863
No 48
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.29 E-value=2e-12 Score=120.27 Aligned_cols=142 Identities=21% Similarity=0.339 Sum_probs=103.0
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc-hhhhhcccCCC-C-CCccceEEechh
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG-IYHDWCEAFST-Y-PRTYDLIHAHGL 252 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~-~~~d~~e~l~~-y-p~sFDlVha~~v 252 (334)
++.+.++++||+|||||-++..|++.- -.++++|+|.+||+.+.++|+-. .++.-...|.. . +..||+|.+..|
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 345668999999999999999998853 35899999999999999999732 23332333442 3 389999999999
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-------------h---hHHHHHHHHhcccceEE-Eec----CCCCC
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------------D---EIIKVKKIVGGMRWDTK-MVD----HEDGP 311 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-------------~---~~~~i~~~~~~l~W~~~-~~~----~~~~~ 311 (334)
|.++- +++.++.-..+.|.|||.|.||-.. + --..+.....+...++. +.+ .+.|.
T Consensus 198 l~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~ 274 (287)
T COG4976 198 LPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGE 274 (287)
T ss_pred HHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCC
Confidence 99875 4789999999999999999998421 0 11345566666655543 211 24444
Q ss_pred CCCceEEEEEec
Q 019879 312 LVPEKILVAVKQ 323 (334)
Q Consensus 312 ~~~e~~l~~~K~ 323 (334)
-.+..+.|++|+
T Consensus 275 pv~G~L~iark~ 286 (287)
T COG4976 275 PVPGILVIARKK 286 (287)
T ss_pred CCCCceEEEecC
Confidence 466777788774
No 49
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.28 E-value=1.3e-11 Score=112.17 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=86.2
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhc-ccCC-CCC-CccceEEec
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWC-EAFS-TYP-RTYDLIHAH 250 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~-e~l~-~yp-~sFDlVha~ 250 (334)
...+|||+|||+|.++..|++... ..+|+++|.+++|++.+.++ ++ +...+..+ +.++ .++ ++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 457999999999999999877521 14799999999999877653 32 12222222 3333 255 899999987
Q ss_pred hhhccc-----cCcCCHHHHHHHHHHhhcCCeEEEEEeC-hhhHHHHHHHHhcccceEEE
Q 019879 251 GLFSLY-----KDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWDTKM 304 (334)
Q Consensus 251 ~vfs~~-----~~~c~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~~~~~l~W~~~~ 304 (334)
...... ........+|.++.|+|||||.|++... ......+...+..-.|.+.+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 433211 1111257899999999999999999754 45666777777777787764
No 50
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.27 E-value=1.3e-11 Score=121.36 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=75.3
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc---cchhhhhcccCCCCC-CccceEEechhhccc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTYP-RTYDLIHAHGLFSLY 256 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl---i~~~~d~~e~l~~yp-~sFDlVha~~vfs~~ 256 (334)
..+|||+|||+|.++..+++.- -..+|+++|.|++|++.+.++.. +...+...+.+ +++ ++||+|+++.+++|.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-p~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-PFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-CCCCCceeEEEEcChhhhC
Confidence 4689999999999988887641 11479999999999998877531 22222223344 455 899999999999886
Q ss_pred cCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 257 KDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 257 ~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
. +.+.+|+|+.|+|||||.+++.+
T Consensus 192 ~---d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 192 P---DPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred C---CHHHHHHHHHHhcCCCcEEEEEE
Confidence 5 46789999999999999998865
No 51
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.27 E-value=3.5e-11 Score=107.96 Aligned_cols=103 Identities=20% Similarity=0.250 Sum_probs=77.5
Q ss_pred CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----cchhhhhcccCCCCC-CccceEEechh
Q 019879 178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYP-RTYDLIHAHGL 252 (334)
Q Consensus 178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----i~~~~d~~e~l~~yp-~sFDlVha~~v 252 (334)
.....+|||+|||+|.++..+++......+++++|+++.++..+.++.. +...+.....++ ++ ++||+|+++.+
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP-FEDNSFDAVTIAFG 115 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC-CCCCcEEEEEEeee
Confidence 3356799999999999999988764221379999999999888877642 112222122333 44 89999999988
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++|.. ++..+++++.++|||||.+++.+.
T Consensus 116 ~~~~~---~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 116 LRNVT---DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred eCCcc---cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 88754 578999999999999999998764
No 52
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.27 E-value=7.5e-12 Score=118.26 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=77.9
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-----cch----hhhhcccCCCCCCccceEEech
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGI----YHDWCEAFSTYPRTYDLIHAHG 251 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-----i~~----~~d~~e~l~~yp~sFDlVha~~ 251 (334)
.++|||+|||+|-+...|+..| .+|+|+|++.+|+++|.+..- .+. ....|.+.--....||.|+|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 4789999999999999999988 479999999999999887621 110 1112222222235699999999
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
|++|+. +++.++.-+.+.|||||.++|++..
T Consensus 167 vleHV~---dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 167 VLEHVK---DPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHh---CHHHHHHHHHHHhCCCCceEeeehh
Confidence 999985 4789999999999999999999854
No 53
>PRK06922 hypothetical protein; Provisional
Probab=99.27 E-value=8.8e-12 Score=130.66 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=77.8
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-----cchhhhhcccCC-CCC-CccceEEechh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAFS-TYP-RTYDLIHAHGL 252 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-----i~~~~d~~e~l~-~yp-~sFDlVha~~v 252 (334)
...+|||+|||+|.++..|++.. ...+|+++|.|+.|++.+.++.. +......+..++ .++ ++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 35799999999999988887642 22589999999999998876521 111222233344 255 99999999998
Q ss_pred hcccc----------CcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 253 FSLYK----------DKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 253 fs~~~----------~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
+|++. +..++..+|+++.|+|||||.+++.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 88642 123578999999999999999999984
No 54
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.27 E-value=3.5e-11 Score=115.14 Aligned_cols=115 Identities=16% Similarity=0.154 Sum_probs=81.7
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccchhhhhcccCCCC-CCccceEEechhhcc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTY-PRTYDLIHAHGLFSL 255 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~~~~d~~e~l~~y-p~sFDlVha~~vfs~ 255 (334)
..+|||+|||+|.++.+++..+. ..|+++|.++.+++.+.++. +.............+ +++||+|+|+.+.++
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~ 237 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV 237 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH
Confidence 37999999999999988887664 37999999999999877652 211111111222233 389999999855432
Q ss_pred ccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEE
Q 019879 256 YKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKM 304 (334)
Q Consensus 256 ~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~ 304 (334)
+..++.++.|+|||||+|+++.... ....+.+.+++. |+...
T Consensus 238 ------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 238 ------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred ------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cceee
Confidence 4679999999999999999987543 445566666665 76543
No 55
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=3.3e-11 Score=115.46 Aligned_cols=108 Identities=21% Similarity=0.365 Sum_probs=82.6
Q ss_pred HHhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHH----cCccchhhhhcccCCCCCCccce
Q 019879 172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYE----RGLIGIYHDWCEAFSTYPRTYDL 246 (334)
Q Consensus 172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~----Rgli~~~~d~~e~l~~yp~sFDl 246 (334)
+...+.-....+|||+|||.|+++.+++++ + .+|+++++|++++..+.+ +|+.....-.-++...++..||-
T Consensus 64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~---v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDr 140 (283)
T COG2230 64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG---VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDR 140 (283)
T ss_pred HHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC---CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccce
Confidence 344343344589999999999999999986 5 479999999999886554 57653222212334455666999
Q ss_pred EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
|+|-.+|+|+. ......++.-++++|+|||.+++-+
T Consensus 141 IvSvgmfEhvg-~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 141 IVSVGMFEHVG-KENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred eeehhhHHHhC-cccHHHHHHHHHhhcCCCceEEEEE
Confidence 99999999986 3568899999999999999998864
No 56
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.24 E-value=4.7e-11 Score=108.82 Aligned_cols=101 Identities=9% Similarity=0.128 Sum_probs=76.0
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCcc----chhhhhcccCCCCCCccceEEechhhcc
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI----GIYHDWCEAFSTYPRTYDLIHAHGLFSL 255 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli----~~~~d~~e~l~~yp~sFDlVha~~vfs~ 255 (334)
...+|||+|||+|.++..|++.+ ..|+++|++++|+..+.++... ....-.+.++...+++||+|++..+++|
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 45799999999999999998875 3689999999999988776311 0111111222223489999999999988
Q ss_pred ccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 256 YKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 256 ~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++ ..++..++.++.|++++|+++.+...
T Consensus 132 ~~-~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 132 YP-ASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred CC-HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 74 34578899999999999888887654
No 57
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.24 E-value=3e-11 Score=108.40 Aligned_cols=90 Identities=23% Similarity=0.331 Sum_probs=68.9
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhccccCcC
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKC 260 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c 260 (334)
.+|||+|||+|.++..|++... .+++++|.+++++..+.++++.-...+..+.+++++ ++||+|+|+++|+|+.
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~--- 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR--- 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc---
Confidence 5899999999999999976532 357999999999998887764322222222344466 8999999999999975
Q ss_pred CHHHHHHHHHHhhcCC
Q 019879 261 NIEDILLEMDRILRPE 276 (334)
Q Consensus 261 ~~~~~L~Em~RVLRPG 276 (334)
++..+|+||.|+++++
T Consensus 90 d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 90 NPEEILDEMLRVGRHA 105 (194)
T ss_pred CHHHHHHHHHHhCCeE
Confidence 4788999999887753
No 58
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.22 E-value=1.2e-10 Score=109.07 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=81.8
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCc
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 259 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~ 259 (334)
...+|||+|||+|.++.+++..+.. .|+++|+++.+++.+.++.-.....+.. .+..-..+||+|+|+...+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~-~~~~~~~~fD~Vvani~~~----- 190 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNV-YLPQGDLKADVIVANILAN----- 190 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceE-EEccCCCCcCEEEEcCcHH-----
Confidence 3479999999999998888776642 5999999999999877652110110000 1111112799999984322
Q ss_pred CCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEEe
Q 019879 260 CNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMV 305 (334)
Q Consensus 260 c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~~ 305 (334)
.+..++.++.|+|||||.+++++... ....+...+....+.....
T Consensus 191 -~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 191 -PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 24678999999999999999997644 4556777777777876543
No 59
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.22 E-value=1.4e-10 Score=103.48 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=81.5
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccC-CCCCCccceEEec
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYPRTYDLIHAH 250 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l-~~yp~sFDlVha~ 250 (334)
+......+|||+|||+|.++..++.... ...|+++|.++.+++.+.++ ++.. ..-.+.+. .+++++||+|+++
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~ 104 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIG 104 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEEC
Confidence 3333557999999999999998887531 24799999999999877653 2211 11111122 2345789999987
Q ss_pred hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC-hhhHHHHHHHHhcccce
Q 019879 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWD 301 (334)
Q Consensus 251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~~~~~l~W~ 301 (334)
.... .+..++.++.|+|+|||.+++... ......+.++++...+.
T Consensus 105 ~~~~------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 105 GSGG------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred CCcc------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 5433 356789999999999999999763 33455666667666664
No 60
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.20 E-value=1e-10 Score=105.97 Aligned_cols=101 Identities=24% Similarity=0.307 Sum_probs=75.6
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----c---cchhhhhcccCCCCC-CccceEEech
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L---IGIYHDWCEAFSTYP-RTYDLIHAHG 251 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----l---i~~~~d~~e~l~~yp-~sFDlVha~~ 251 (334)
...+|||+|||+|.++..++.......+++++|.++.+++.+.++. + +.........+ +++ ++||+|++++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~I~~~~ 129 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL-PFPDNSFDAVTIAF 129 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC-CCCCCCccEEEEec
Confidence 4578999999999999988875421247999999999998877652 1 11222112222 244 8999999998
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++++.. ++..+|.++.++|+|||.+++.+.
T Consensus 130 ~l~~~~---~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 130 GLRNVP---DIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred ccccCC---CHHHHHHHHHHhccCCcEEEEEEe
Confidence 888754 578999999999999999998753
No 61
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.20 E-value=1.5e-10 Score=94.47 Aligned_cols=96 Identities=20% Similarity=0.148 Sum_probs=67.8
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCCC-CCccceEEechh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFSTY-PRTYDLIHAHGL 252 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~y-p~sFDlVha~~v 252 (334)
...+|||+|||+|.++..++++... .+|+++|.++.+++.+.++ ++. ...........++ +.+||+|++...
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 3469999999999999999875211 5799999999998876543 221 1111111111222 379999998754
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.+ ....++.++.|+|+|||.|++.
T Consensus 98 ~~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 98 GG------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ch------hHHHHHHHHHHHcCCCCEEEEE
Confidence 33 3468999999999999999986
No 62
>PRK14968 putative methyltransferase; Provisional
Probab=99.19 E-value=2.6e-10 Score=100.06 Aligned_cols=119 Identities=15% Similarity=0.221 Sum_probs=82.3
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc----c-chhhhhcccCCCCC-CccceEEe
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL----I-GIYHDWCEAFSTYP-RTYDLIHA 249 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl----i-~~~~d~~e~l~~yp-~sFDlVha 249 (334)
+..+|||+|||+|.++..|+..+ .+|+++|.+++++..+.++ ++ + ....|+. .+++ .+||+|++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLF---EPFRGDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccc---ccccccCceEEEE
Confidence 45689999999999999998874 5799999999998877543 22 1 1122222 2344 68999998
Q ss_pred chhhcccc------------------CcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEE
Q 019879 250 HGLFSLYK------------------DKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKM 304 (334)
Q Consensus 250 ~~vfs~~~------------------~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~ 304 (334)
+..+.+.. ....+..++.++.|+|||||.+++..... ..+.+...+....+++..
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence 75443210 01125678999999999999988765432 345677777777777653
No 63
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.18 E-value=8.9e-11 Score=107.58 Aligned_cols=134 Identities=10% Similarity=0.054 Sum_probs=78.9
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCC-------CCC-CccceEEechh
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-------TYP-RTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~-------~yp-~sFDlVha~~v 252 (334)
..+|||+|||+|.++..+++.......|+++|+++ |... .++ ..++...+... +++ .+||+|+|+..
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~~---~~v-~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDPI---VGV-DFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccCC---CCc-EEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 46899999999999998887632224699999984 4221 121 11221122211 244 89999999865
Q ss_pred hccccCcC-C-------HHHHHHHHHHhhcCCeEEEEEeChh-----hHHHHHHHHhcccceEEEecCCCCCCCCceEEE
Q 019879 253 FSLYKDKC-N-------IEDILLEMDRILRPEGAIIIRDEVD-----EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILV 319 (334)
Q Consensus 253 fs~~~~~c-~-------~~~~L~Em~RVLRPGG~lii~D~~~-----~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~ 319 (334)
.+...+.. + .+.+|.++.|+|||||.|++..... .+..++..+..... ..+.-.-....|.+++
T Consensus 127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~---~Kp~ssr~~s~e~~~~ 203 (209)
T PRK11188 127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV---RKPDSSRARSREVYIV 203 (209)
T ss_pred CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE---ECCccccccCceeEEE
Confidence 44322111 1 2579999999999999999965432 22332222222222 1111111225799999
Q ss_pred EEe
Q 019879 320 AVK 322 (334)
Q Consensus 320 ~~K 322 (334)
|+.
T Consensus 204 ~~~ 206 (209)
T PRK11188 204 ATG 206 (209)
T ss_pred eec
Confidence 864
No 64
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.17 E-value=1e-10 Score=104.48 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=79.0
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccC------CCCC-CccceEEechh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF------STYP-RTYDLIHAHGL 252 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l------~~yp-~sFDlVha~~v 252 (334)
...+|||+|||+|+++..+.++......|+++|.++.+ ...++.....+..+.. ..++ ++||+|+++..
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 34789999999999998887653222368999999643 1112211111211110 0244 78999998643
Q ss_pred h--------ccccCcCCHHHHHHHHHHhhcCCeEEEEEe-ChhhHHHHHHHHhcccceEEEe-cCCCCCCCCceEEEEEe
Q 019879 253 F--------SLYKDKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGMRWDTKMV-DHEDGPLVPEKILVAVK 322 (334)
Q Consensus 253 f--------s~~~~~c~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~~~~~l~W~~~~~-~~~~~~~~~e~~l~~~K 322 (334)
. .|....+.++.+|.++.|+|||||.+++.. ....+.++-..++..-+.+... +.-.-....|++++|..
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKR 187 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEec
Confidence 2 111111234689999999999999999953 2222222222222222444432 33222335799999863
No 65
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.16 E-value=8.9e-11 Score=105.86 Aligned_cols=116 Identities=12% Similarity=0.157 Sum_probs=76.8
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCC--CCC-CccceEEech
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFS--TYP-RTYDLIHAHG 251 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~--~yp-~sFDlVha~~ 251 (334)
...|||+|||+|.++..|+.+.. ..+|+++|.+++++..+.++ ++ +...+..+..++ .++ ++||.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 46899999999999999987632 24899999999999876543 32 112222222222 255 7999998874
Q ss_pred hhcc-----ccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhc
Q 019879 252 LFSL-----YKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGG 297 (334)
Q Consensus 252 vfs~-----~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~ 297 (334)
-..+ ...+...+.++.++.|+|||||.|++..... ..+.+.+.+..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 2221 1112223679999999999999999875544 55555444433
No 66
>PRK04266 fibrillarin; Provisional
Probab=99.16 E-value=4.4e-10 Score=104.57 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=63.5
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH----cCccchh-hhhcccC--CCCCCccceEEechh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIGIY-HDWCEAF--STYPRTYDLIHAHGL 252 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~----Rgli~~~-~d~~e~l--~~yp~sFDlVha~~v 252 (334)
...+|||+|||+|.++..|++.-. ...|+++|.++.|++.+.+ +..+... .|..+.. ..++.+||+|++.
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d-- 148 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD-- 148 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC--
Confidence 347999999999999999987521 2369999999988874432 2212222 2211110 1234679999764
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIII 281 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii 281 (334)
..+......+|.|+.|+|||||.|++
T Consensus 149 ---~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 149 ---VAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred ---CCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 11111234568999999999999999
No 67
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.15 E-value=3.3e-10 Score=102.94 Aligned_cols=99 Identities=14% Similarity=0.174 Sum_probs=72.1
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccchhhhhcccCCCCCCccceEEechhhcc
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYPRTYDLIHAHGLFSL 255 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~~~~d~~e~l~~yp~sFDlVha~~vfs~ 255 (334)
...+|||+|||+|.++..|++.+. .|+++|.|++|+..+.++- +....+....+++..+++||+|++..+|+|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 457999999999999999998763 4999999999999887652 111111111233333489999999999988
Q ss_pred ccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 256 YKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 256 ~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
+.+ .++..++.++.|++++|+.+.+.
T Consensus 140 ~~~-~~~~~~l~~l~~~~~~~~~i~~~ 165 (230)
T PRK07580 140 YPQ-EDAARMLAHLASLTRGSLIFTFA 165 (230)
T ss_pred CCH-HHHHHHHHHHHhhcCCeEEEEEC
Confidence 653 45778999999988666555443
No 68
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.15 E-value=9.9e-11 Score=107.87 Aligned_cols=98 Identities=10% Similarity=0.057 Sum_probs=72.3
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH-cCccc--------------hhhhhcccCCCCC----
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE-RGLIG--------------IYHDWCEAFSTYP---- 241 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~-Rgli~--------------~~~d~~e~l~~yp---- 241 (334)
..+|||+|||.|..+.+|+++| .+|+++|+|+.+++.+++ .|+.. .+.-.+.++..++
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 3699999999999999999998 479999999999987533 34311 0111233332222
Q ss_pred CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.+||+|+...+|+|++ ......++..|.|.|||||.+++.
T Consensus 112 ~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 112 GPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEE
Confidence 5799999998898875 345678999999999999975443
No 69
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.15 E-value=5.1e-10 Score=100.99 Aligned_cols=147 Identities=15% Similarity=0.232 Sum_probs=91.7
Q ss_pred CCCccccch--hhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc--
Q 019879 149 GVSAESYQE--DSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-- 224 (334)
Q Consensus 149 g~~~e~f~~--d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-- 224 (334)
|+....|.. +.-.++..+..- .+..+......+|||+|||+|.++..++..-....+|+++|.++.+++.+.++
T Consensus 9 ~~~d~~~~~~~~~~~t~~~~r~~--~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~ 86 (198)
T PRK00377 9 GIPDEEFERDEEIPMTKEEIRAL--ALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAE 86 (198)
T ss_pred CCChHHHccCCCCCCCHHHHHHH--HHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 555556665 334666656432 12234444557999999999999887765311124699999999999877554
Q ss_pred --Cccc---hhh-hhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC-hhhHHHHHHHHhc
Q 019879 225 --GLIG---IYH-DWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGG 297 (334)
Q Consensus 225 --gli~---~~~-d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~~~~~ 297 (334)
|+.. ... +..+.++..+..||+|++.. ...++..++.++.|+|||||.+++... .+.+.++...++.
T Consensus 87 ~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 160 (198)
T PRK00377 87 KFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN 160 (198)
T ss_pred HhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence 3211 111 11111222337899998852 123578899999999999999998432 3345566666666
Q ss_pred ccceEE
Q 019879 298 MRWDTK 303 (334)
Q Consensus 298 l~W~~~ 303 (334)
+.++..
T Consensus 161 ~g~~~~ 166 (198)
T PRK00377 161 IGFNLE 166 (198)
T ss_pred cCCCeE
Confidence 665544
No 70
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.13 E-value=2.5e-10 Score=105.57 Aligned_cols=125 Identities=14% Similarity=0.200 Sum_probs=92.3
Q ss_pred HHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCcc-----chhhhhcccCCCCCCcc
Q 019879 170 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-----GIYHDWCEAFSTYPRTY 244 (334)
Q Consensus 170 ~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli-----~~~~d~~e~l~~yp~sF 244 (334)
.+++..|.....++|.|+|||+|...+.|.++= -...|+|+|.|++||+.|.+|... +..+.|+- +..+
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p-----~~~~ 93 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKP-----EQPT 93 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCC-----CCcc
Confidence 456777888889999999999999999998861 124589999999999999888642 23333332 1789
Q ss_pred ceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE--eChh--hHHHHHHHHhcccceEE
Q 019879 245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR--DEVD--EIIKVKKIVGGMRWDTK 303 (334)
Q Consensus 245 DlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~--D~~~--~~~~i~~~~~~l~W~~~ 303 (334)
|+++++.+|+.+++ -..+|..+.--|.|||.|.+. |+.+ .-..|.+.++..-|...
T Consensus 94 dllfaNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~ 153 (257)
T COG4106 94 DLLFANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQE 153 (257)
T ss_pred chhhhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhh
Confidence 99999999998765 367888888899999999997 3222 12345555555555433
No 71
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.12 E-value=2.4e-10 Score=103.68 Aligned_cols=99 Identities=14% Similarity=0.214 Sum_probs=75.0
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCC-CCccceEEechh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTY-PRTYDLIHAHGL 252 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~y-p~sFDlVha~~v 252 (334)
...+|||+|||+|.++..+++.+. .++++|.++.++..+.++ +. +.......+.++.. +++||+|+++.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 357999999999999998887653 589999999998877654 22 11111212223322 389999999999
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++|.. ++..+|.++.++|+|||.+++++.
T Consensus 122 l~~~~---~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 122 LEHVP---DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HHhCC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 98864 578999999999999999999864
No 72
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.11 E-value=3.5e-10 Score=103.62 Aligned_cols=100 Identities=13% Similarity=0.224 Sum_probs=75.6
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCC-CccceEEechh
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYP-RTYDLIHAHGL 252 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp-~sFDlVha~~v 252 (334)
.+..+|||+|||+|.++..+.+.+ .+++++|.++.++..+.++ ++ +.......+.++..+ ++||+|+++.+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 345789999999999999998875 4699999999998877664 22 111111112222223 89999999999
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++|.. +...+|.++.|+|+|||.+++.+.
T Consensus 124 l~~~~---~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 124 LEHVP---DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hhccC---CHHHHHHHHHHHcCCCcEEEEEec
Confidence 98865 467899999999999999999864
No 73
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.10 E-value=7.7e-10 Score=108.78 Aligned_cols=115 Identities=16% Similarity=0.150 Sum_probs=78.5
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCCCccceEEechhhccc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLY 256 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp~sFDlVha~~vfs~~ 256 (334)
..+|||+|||+|.++..+.++.. ...|+++|+++.++..+.+. ++..... +...+...++.||+|+|+.-||..
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 35799999999999999988632 13699999999999877542 3321111 111223335899999999888753
Q ss_pred cC--cCCHHHHHHHHHHhhcCCeEEEEEeChh--hHHHHHHHHhc
Q 019879 257 KD--KCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKIVGG 297 (334)
Q Consensus 257 ~~--~c~~~~~L~Em~RVLRPGG~lii~D~~~--~~~~i~~~~~~ 297 (334)
.. ....+.++.++.|.|||||.|+|..+.- +-..+++.+..
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~ 319 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGS 319 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCC
Confidence 21 1235799999999999999998865432 33444544443
No 74
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.10 E-value=7.8e-10 Score=110.20 Aligned_cols=119 Identities=16% Similarity=0.140 Sum_probs=80.0
Q ss_pred hhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-----cchhhhhcccCCCCC-Cc
Q 019879 174 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-----IGIYHDWCEAFSTYP-RT 243 (334)
Q Consensus 174 ~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-----i~~~~d~~e~l~~yp-~s 243 (334)
..+......+|||+|||+|.++..++++.. ...|+++|.|+.+++.+.+. +. +....+ ..+...+ .+
T Consensus 222 ~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~--D~l~~~~~~~ 298 (378)
T PRK15001 222 QHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN--NALSGVEPFR 298 (378)
T ss_pred HhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEc--cccccCCCCC
Confidence 334433346899999999999999987632 14799999999999887653 11 111111 1223344 68
Q ss_pred cceEEechhhcccc--CcCCHHHHHHHHHHhhcCCeEEEEEeC--hhhHHHHHHHH
Q 019879 244 YDLIHAHGLFSLYK--DKCNIEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIV 295 (334)
Q Consensus 244 FDlVha~~vfs~~~--~~c~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~~~ 295 (334)
||+|+|+--||... .......++.+..|+|||||.|++.-. .++..++++++
T Consensus 299 fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~f 354 (378)
T PRK15001 299 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIF 354 (378)
T ss_pred EEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHc
Confidence 99999997776421 111246899999999999999998753 33555666644
No 75
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.09 E-value=3.5e-10 Score=102.94 Aligned_cols=100 Identities=18% Similarity=0.103 Sum_probs=67.4
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCCCccceEE
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYPRTYDLIH 248 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp~sFDlVh 248 (334)
+......+|||+|||+|.+++.|++.-.-...|+++|.++++++.+.++ |+. ...+.......+...+||+|+
T Consensus 68 l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 147 (205)
T PRK13944 68 IEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAII 147 (205)
T ss_pred cCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEE
Confidence 3333457999999999999988876311013699999999998877653 321 122211112112237999999
Q ss_pred echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++..+.++ ..|+.|+|+|||.|++...
T Consensus 148 ~~~~~~~~---------~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 148 VTAAASTI---------PSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EccCcchh---------hHHHHHhcCcCcEEEEEEc
Confidence 98776543 2488999999999998643
No 76
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.08 E-value=4.3e-10 Score=103.46 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=76.5
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-----c--cchhhhhcccCCCCC-CccceEEechh
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-----L--IGIYHDWCEAFSTYP-RTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-----l--i~~~~d~~e~l~~yp-~sFDlVha~~v 252 (334)
-..||.+|||||..-.++-..+. ..|+.+|.+++|-+++..+- + .-.++...|.++..+ .|+|.|+|..+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~--~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPI--NSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred ccceEEecccCCCCcccccCCCC--ceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 35789999999986666654332 46999999999988654431 1 113445567787677 99999999988
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
+-.. .+..+.|.|+.|+|||||.+++-++.
T Consensus 155 LCSv---e~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 155 LCSV---EDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred Eecc---CCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 7643 46899999999999999999999875
No 77
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.08 E-value=4.5e-10 Score=107.71 Aligned_cols=105 Identities=13% Similarity=0.172 Sum_probs=73.9
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCC--CCCCccceEEe
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS--TYPRTYDLIHA 249 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~--~yp~sFDlVha 249 (334)
+.....++|||+|||+|.++..++++.-. .+++.+|. +.+++.+.++ |+...+...+.++. ++| .+|+|++
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~ 221 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLF 221 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEe
Confidence 34445689999999999999999886321 46889998 4788876543 44221111122322 234 4799999
Q ss_pred chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++++|+..+ .....+|++++|+|||||.+++.|.
T Consensus 222 ~~~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 222 CRILYSANE-QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EhhhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 988887642 3356899999999999999999874
No 78
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.08 E-value=4.8e-10 Score=103.64 Aligned_cols=97 Identities=10% Similarity=0.038 Sum_probs=73.2
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHH-HHcCccch--------------hhhhcccCCCC---C-
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVI-YERGLIGI--------------YHDWCEAFSTY---P- 241 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a-~~Rgli~~--------------~~d~~e~l~~y---p- 241 (334)
..+|||+|||.|..+.+|+++|. +|+++|+|+..++.+ .++|+... +.-++.++..+ +
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 36999999999999999999984 699999999988865 34554211 11122333222 3
Q ss_pred CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879 242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 281 (334)
Q Consensus 242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii 281 (334)
.+||+|+...+|+|++ ...-..++..|.++|||||.+++
T Consensus 115 ~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence 6899999999999885 34567999999999999996444
No 79
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.07 E-value=5.5e-10 Score=107.53 Aligned_cols=126 Identities=13% Similarity=0.144 Sum_probs=81.5
Q ss_pred CccccchhhhhhHHHHHHHHH-HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC---c
Q 019879 151 SAESYQEDSNKWKKHVNAYKK-INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---L 226 (334)
Q Consensus 151 ~~e~f~~d~~~W~~~v~~y~~-ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg---l 226 (334)
.+++|...++. .....+.. +...++. ..+|||+|||+|.++..|++......+++++|+|++||+.+.++- .
T Consensus 37 ~peYy~tr~E~--~il~~~~~~ia~~~~~--~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~ 112 (301)
T TIGR03438 37 LPEYYPTRTEA--AILERHADEIAAATGA--GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY 112 (301)
T ss_pred CCccccHHHHH--HHHHHHHHHHHHhhCC--CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC
Confidence 34666655542 44444433 3334443 468999999999999999876321257999999999999887651 1
Q ss_pred c-----chhhhhcccCCCCCC-----ccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 227 I-----GIYHDWCEAFSTYPR-----TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 227 i-----~~~~d~~e~l~~yp~-----sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. ....|..+.+ .++. ...++++.+.|+++. ..+...+|++++++|+|||.|+|.
T Consensus 113 p~~~v~~i~gD~~~~~-~~~~~~~~~~~~~~~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 113 PQLEVHGICADFTQPL-ALPPEPAAGRRLGFFPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred CCceEEEEEEcccchh-hhhcccccCCeEEEEecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 1 1112222222 2332 233555556787764 456779999999999999999985
No 80
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.04 E-value=8.8e-10 Score=106.53 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=76.8
Q ss_pred HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHH-HHHHcCccc---hhh---hhcccCCCCCCcc
Q 019879 172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG-VIYERGLIG---IYH---DWCEAFSTYPRTY 244 (334)
Q Consensus 172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~-~a~~Rgli~---~~~---d~~e~l~~yp~sF 244 (334)
+.+.|.+.+.++|||+|||.|.++-.|+.+|+. .|+|+|.+.-.+. +.+-+.+++ ..+ .-.|.++. .++|
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~F 183 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAF 183 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCc
Confidence 334455667799999999999999999988763 5899998754322 211121211 000 11245554 6899
Q ss_pred ceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 245 DlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
|+|+|-.||.|.. ++...|.++...|||||.+++-+
T Consensus 184 DtVF~MGVLYHrr---~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 184 DTVFSMGVLYHRR---SPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred CEEEEeeehhccC---CHHHHHHHHHHhhCCCCEEEEEE
Confidence 9999999999964 58899999999999999999853
No 81
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.01 E-value=1.9e-09 Score=100.05 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=95.9
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccch--hhhhcccCCCCCCccceEEechhh
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGI--YHDWCEAFSTYPRTYDLIHAHGLF 253 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~d~~e~l~~yp~sFDlVha~~vf 253 (334)
+.....+-|||||||+|--+..|.+.| .-.+++|+|+.||++|.+|-+.+. +.|--+.+|+-|+|||-|++-+.+
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee
Confidence 455467889999999999999999887 347999999999999998755432 334456775555999999887655
Q ss_pred ccc---cCcC-----CHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceE----EEecCCCCCCCCceEEEE
Q 019879 254 SLY---KDKC-----NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT----KMVDHEDGPLVPEKILVA 320 (334)
Q Consensus 254 s~~---~~~c-----~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~----~~~~~~~~~~~~e~~l~~ 320 (334)
..+ ...+ .+..++.-++.+|++|+..++.=-++....++.+.+.-+|.- .+.|..++...+-.+||-
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL 201 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVL 201 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccccceeEEEE
Confidence 422 1111 234678889999999999999854443333444433333322 144554444455566665
No 82
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=4.7e-09 Score=101.49 Aligned_cols=143 Identities=15% Similarity=0.193 Sum_probs=94.7
Q ss_pred ccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccch
Q 019879 154 SYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGI 229 (334)
Q Consensus 154 ~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~~ 229 (334)
.|-.-++---..+-...+- .+. +.++|||+|||+|-++.+.+..|+ .-|+++|+.+.+++.+++.- +...
T Consensus 140 AFGTG~HpTT~lcL~~Le~--~~~--~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~ 213 (300)
T COG2264 140 AFGTGTHPTTSLCLEALEK--LLK--KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELL 213 (300)
T ss_pred ccCCCCChhHHHHHHHHHH--hhc--CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchh
Confidence 4555555433444332221 122 468999999999999999988875 35899999999999887642 2111
Q ss_pred hhhhcccCCCCC--CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEEec
Q 019879 230 YHDWCEAFSTYP--RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD 306 (334)
Q Consensus 230 ~~d~~e~l~~yp--~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~~~ 306 (334)
.+.-.-..+..+ +.||+|+||= +.. -+..+..++.|.|||||++|+|--.+ ..+.+.+.+.+-.|++....
T Consensus 214 ~~~~~~~~~~~~~~~~~DvIVANI-LA~-----vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 214 VQAKGFLLLEVPENGPFDVIVANI-LAE-----VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred hhcccccchhhcccCcccEEEehh-hHH-----HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEE
Confidence 111111122344 5999999983 322 24688899999999999999997543 45567777877788776544
Q ss_pred CC
Q 019879 307 HE 308 (334)
Q Consensus 307 ~~ 308 (334)
..
T Consensus 288 ~~ 289 (300)
T COG2264 288 ER 289 (300)
T ss_pred ec
Confidence 33
No 83
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.01 E-value=4.7e-09 Score=98.18 Aligned_cols=139 Identities=17% Similarity=0.250 Sum_probs=88.3
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc---Cccchhhhhccc-CCCCC-CccceEEechhhc
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---GLIGIYHDWCEA-FSTYP-RTYDLIHAHGLFS 254 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R---gli~~~~d~~e~-l~~yp-~sFDlVha~~vfs 254 (334)
+..+|||+|||+|.++..|+.... ...|+++|+++.++..+.+. +......-.+.+ +.+++ ++||+|+++--+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 446899999999999999987531 24799999999999887764 211111101111 22334 7999999862111
Q ss_pred ------cccC-----------------cCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccce-EEEecCCCC
Q 019879 255 ------LYKD-----------------KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD-TKMVDHEDG 310 (334)
Q Consensus 255 ------~~~~-----------------~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~-~~~~~~~~~ 310 (334)
.+.. ......++.++.++|+|||++++......-+.+..++....+. +..+ .+
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~--~d- 263 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETR--KD- 263 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEe--cC-
Confidence 0000 0113578899999999999999976555445677777665554 3332 11
Q ss_pred CCCCceEEEEEe
Q 019879 311 PLVPEKILVAVK 322 (334)
Q Consensus 311 ~~~~e~~l~~~K 322 (334)
-.+.+++++++|
T Consensus 264 ~~~~~r~~~~~~ 275 (275)
T PRK09328 264 LAGRDRVVLGRR 275 (275)
T ss_pred CCCCceEEEEEC
Confidence 125788888764
No 84
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.00 E-value=8.4e-10 Score=107.49 Aligned_cols=97 Identities=12% Similarity=0.164 Sum_probs=68.4
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc-------hhhh-hcccCCCCCCccceEEech
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG-------IYHD-WCEAFSTYPRTYDLIHAHG 251 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~-------~~~d-~~e~l~~yp~sFDlVha~~ 251 (334)
...+|||+|||+|.++..|++++ .+|+++|+|++|++.+.++.-.. .... .+.++..++++||+|+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 34699999999999999999876 37999999999999887763110 0001 1123333468999999999
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPEGAIII 281 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii 281 (334)
+++|+++ .....++..+.+ +.+||.++.
T Consensus 221 vL~H~p~-~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 221 VLIHYPQ-DKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred EEEecCH-HHHHHHHHHHHh-hcCCEEEEE
Confidence 9999764 234556666765 456666543
No 85
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.00 E-value=3e-09 Score=97.77 Aligned_cols=119 Identities=18% Similarity=0.294 Sum_probs=81.2
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCCCC-CccceEEechhh
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFSTYP-RTYDLIHAHGLF 253 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~yp-~sFDlVha~~vf 253 (334)
..+|||+|||+|.++..+++... ..+++++|.++.++..+.++ ++. ...+. ..+.+++ ++||+|+|+--+
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--d~~~~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQS--DWFEPLPGGKFDLIVSNPPY 164 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEEC--chhccCcCCceeEEEECCCC
Confidence 35899999999999999987521 14799999999999877653 331 11211 1123455 899999996332
Q ss_pred cc------ccCc-----------------CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceE
Q 019879 254 SL------YKDK-----------------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 302 (334)
Q Consensus 254 s~------~~~~-----------------c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~ 302 (334)
.. +... .....++.++.|+|+|||.+++.......+.+.++++...+..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFAD 236 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCc
Confidence 21 1100 0124688999999999999999876655567777777766653
No 86
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.99 E-value=1.4e-09 Score=99.44 Aligned_cols=99 Identities=16% Similarity=0.010 Sum_probs=66.4
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCCCccceEEe
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDLIHA 249 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp~sFDlVha 249 (334)
+......+|||+|||+|.+++.|++.......|+++|.++++++.+.++ |+ +...+.......+-...||+|++
T Consensus 73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~ 152 (215)
T TIGR00080 73 LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYV 152 (215)
T ss_pred hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEE
Confidence 3334457999999999999999887532223589999999999877654 33 11122111111111278999998
Q ss_pred chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
+....+ +..++.+.|+|||.+++.-
T Consensus 153 ~~~~~~---------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 153 TAAGPK---------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cCCccc---------ccHHHHHhcCcCcEEEEEE
Confidence 754433 4457889999999999864
No 87
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.99 E-value=6.9e-10 Score=103.93 Aligned_cols=112 Identities=21% Similarity=0.187 Sum_probs=74.1
Q ss_pred ceEeeecccccHHHHHHH-hCCCcEEEEEeccCChhhHHHHHHcCccchhh-------hhcccCCCCCCccceEEechhh
Q 019879 182 RNIMDMNAGFGGFAAAIQ-SSKLWVMNVVPTLADKNTLGVIYERGLIGIYH-------DWCEAFSTYPRTYDLIHAHGLF 253 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~-~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~-------d~~e~l~~yp~sFDlVha~~vf 253 (334)
+.++|+|||+| .|+..+ +.. -+|+++|.|+.||+++...-.+...| +-..+|.--++|.|+|+|...+
T Consensus 35 ~~a~DvG~G~G-qa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 35 RLAWDVGTGNG-QAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred ceEEEeccCCC-cchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 48999999999 555444 432 46999999999999887653322111 1111222225999999999888
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCe-EEEE---EeChhhHHHHHHHHhcccce
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEG-AIII---RDEVDEIIKVKKIVGGMRWD 301 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG-~lii---~D~~~~~~~i~~~~~~l~W~ 301 (334)
| |++++.++++++|||||.| .+.+ +|..-...++..++.++.|.
T Consensus 111 H----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 111 H----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred H----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 6 7899999999999999877 4433 22222233444445555553
No 88
>PLN03075 nicotianamine synthase; Provisional
Probab=98.99 E-value=8.7e-09 Score=99.61 Aligned_cols=137 Identities=12% Similarity=0.116 Sum_probs=92.1
Q ss_pred CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc-----Cc---cch-hhhhcccCCCCCCccceEEe
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER-----GL---IGI-YHDWCEAFSTYPRTYDLIHA 249 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R-----gl---i~~-~~d~~e~l~~yp~sFDlVha 249 (334)
..++|+|+|||.|++.+.++.. -.....++++|.++++++.|++. |+ +.+ ..|..+ ..+..+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~-~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD-VTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh-cccccCCcCEEEE
Confidence 6799999999999876655442 11123589999999998876542 22 111 112222 1112278999999
Q ss_pred chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHH-------HhcccceEEEecCCCCCCCCceEEEEEe
Q 019879 250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKI-------VGGMRWDTKMVDHEDGPLVPEKILVAVK 322 (334)
Q Consensus 250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~-------~~~l~W~~~~~~~~~~~~~~e~~l~~~K 322 (334)
. ++++. +..+.+.+|..+.|.|||||.++++-... ++.+ ..--.|++-...|..++ .-+-++|++|
T Consensus 202 ~-ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G----~r~~LYp~v~~~~~~gf~~~~~~~P~~~-v~Nsvi~~r~ 274 (296)
T PLN03075 202 A-ALVGM-DKEEKVKVIEHLGKHMAPGALLMLRSAHG----ARAFLYPVVDPCDLRGFEVLSVFHPTDE-VINSVIIARK 274 (296)
T ss_pred e-ccccc-ccccHHHHHHHHHHhcCCCcEEEEecccc----hHhhcCCCCChhhCCCeEEEEEECCCCC-ceeeEEEEEe
Confidence 9 77654 23578999999999999999999997422 1111 11117888766676555 6688999999
Q ss_pred cc
Q 019879 323 QY 324 (334)
Q Consensus 323 ~~ 324 (334)
.-
T Consensus 275 ~~ 276 (296)
T PLN03075 275 PG 276 (296)
T ss_pred ec
Confidence 65
No 89
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.97 E-value=2.3e-09 Score=98.28 Aligned_cols=98 Identities=16% Similarity=0.058 Sum_probs=66.1
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC-CccceEE
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP-RTYDLIH 248 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp-~sFDlVh 248 (334)
+......+|||+|||+|.+++.|++.......|+++|.++++++.+.++ |+ +...+..+.. ...+ +.||+|+
T Consensus 72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~-~~~~~~~fD~I~ 150 (212)
T PRK13942 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL-GYEENAPYDRIY 150 (212)
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc-CCCcCCCcCEEE
Confidence 3334458999999999999988876421123699999999999887664 32 1112211111 1223 8899999
Q ss_pred echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
+...+++ +..++.+.|||||.+++--
T Consensus 151 ~~~~~~~---------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 151 VTAAGPD---------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ECCCccc---------chHHHHHhhCCCcEEEEEE
Confidence 9765543 3346778999999998854
No 90
>PRK14967 putative methyltransferase; Provisional
Probab=98.97 E-value=5.4e-09 Score=96.02 Aligned_cols=118 Identities=14% Similarity=0.280 Sum_probs=75.8
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhh-hhcccCCCCC-CccceEEechhh
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYH-DWCEAFSTYP-RTYDLIHAHGLF 253 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~-d~~e~l~~yp-~sFDlVha~~vf 253 (334)
..+|||+|||+|.++..++..+. ..|+++|.++.++..+.++ ++ +..+. |+.+ .++ ++||+|+++.-+
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFRPFDVVVSNPPY 111 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCCCeeEEEECCCC
Confidence 46899999999999998887653 3799999999999876553 32 11111 2111 234 799999998433
Q ss_pred ccccC------------------cCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEE
Q 019879 254 SLYKD------------------KCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTK 303 (334)
Q Consensus 254 s~~~~------------------~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~ 303 (334)
..... ...++.++.++.|+|||||.+++..... ....+...+++..++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 180 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAE 180 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeE
Confidence 21100 0115678899999999999999853321 23334444444455444
No 91
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.97 E-value=2.9e-09 Score=106.42 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=75.9
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhccc-CCCCC-CccceEEech
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEA-FSTYP-RTYDLIHAHG 251 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~-l~~yp-~sFDlVha~~ 251 (334)
....+||+|||+|.++..++.+.- ..+++|+|+++.++..+.++ |+. ......+.. +..++ ++||.|+++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 346899999999999999988632 24899999999888765443 441 122221222 23466 9999999863
Q ss_pred hhccccC---cCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHH
Q 019879 252 LFSLYKD---KCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIV 295 (334)
Q Consensus 252 vfs~~~~---~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~ 295 (334)
-..+... +-....+|.|+.|+|+|||.+.+.+.. ++...+.+.+
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~ 248 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELF 248 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHH
Confidence 2221110 112368999999999999999986544 4555544443
No 92
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.96 E-value=2.3e-09 Score=81.73 Aligned_cols=96 Identities=19% Similarity=0.310 Sum_probs=69.1
Q ss_pred eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH---cCc---cchhhhhcccCCC-CCCccceEEechhhcc
Q 019879 183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE---RGL---IGIYHDWCEAFST-YPRTYDLIHAHGLFSL 255 (334)
Q Consensus 183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~---Rgl---i~~~~d~~e~l~~-yp~sFDlVha~~vfs~ 255 (334)
+|||+|||+|.++..+.... ...++++|.++..+..+.+ .+. +..++........ .+.+||+|+++.++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 58999999999999888732 2579999999888776652 111 1122211222222 2388999999988876
Q ss_pred ccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 256 YKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 256 ~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. ......++..+.+.|||||.+++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 235789999999999999999986
No 93
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.96 E-value=7.8e-09 Score=99.01 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=80.5
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchhhhhccc-CCCCC-CccceEEech---
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYP-RTYDLIHAHG--- 251 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~-l~~yp-~sFDlVha~~--- 251 (334)
..+|||+|||+|.++..|+.... ...|+++|+|+.++..+.+. |+...+.-.+.+ +.+++ ++||+|+++-
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 46899999999999999987521 14799999999999987654 431111111112 12345 6899999961
Q ss_pred ---hhc-------cccC--------c-CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEec
Q 019879 252 ---LFS-------LYKD--------K-CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD 306 (334)
Q Consensus 252 ---vfs-------~~~~--------~-c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~ 306 (334)
.+. |.+. . .....++.++.++|+|||.+++-..... +.+++++....|.-..++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~ 273 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFE 273 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeec
Confidence 111 1110 0 0135789999999999999998766543 577777665554433333
No 94
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.94 E-value=2.5e-09 Score=94.50 Aligned_cols=116 Identities=19% Similarity=0.271 Sum_probs=73.9
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCC-CccceEEechhhc
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLFS 254 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp-~sFDlVha~~vfs 254 (334)
...+|||+|||+|.++..++.+... ..|+.+|+++.++..+.+. ++.......+..+...+ ..||+|+|+-=|+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence 3478999999999999999987543 4599999999999877553 32211111122233344 9999999984443
Q ss_pred cccC--cCCHHHHHHHHHHhhcCCeEEEEEeC--hhhHHHHHHHHh
Q 019879 255 LYKD--KCNIEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIVG 296 (334)
Q Consensus 255 ~~~~--~c~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~~~~ 296 (334)
.-.+ ......++.+..+.|+|||.+++--. ...-..+++.+.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 2111 11257899999999999998855432 223333455444
No 95
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.93 E-value=1.1e-08 Score=97.64 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=90.5
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chh-hhhcccCCCCC-CccceEEec--
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIY-HDWCEAFSTYP-RTYDLIHAH-- 250 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~-~d~~e~l~~yp-~sFDlVha~-- 250 (334)
.+|||+|||+|.++..|+.... ...|+++|+|+.++..+.+. ++. ..+ .|+.+ +++ ..||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~---~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE---PLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc---cCcCCCccEEEECCC
Confidence 5899999999999999987531 14699999999999887764 321 111 23222 344 489999996
Q ss_pred -----------hhhccccCc---------CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHh-cccce-EEEecCC
Q 019879 251 -----------GLFSLYKDK---------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVG-GMRWD-TKMVDHE 308 (334)
Q Consensus 251 -----------~vfs~~~~~---------c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~-~l~W~-~~~~~~~ 308 (334)
.++.|.+.. ..+..++.+..+.|+|||++++-........+.+++. ...|. +.++ .
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~--~ 269 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENG--R 269 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEe--c
Confidence 122221100 1255889999999999999999877665566777665 45664 3332 2
Q ss_pred CCCCCCceEEEEEec
Q 019879 309 DGPLVPEKILVAVKQ 323 (334)
Q Consensus 309 ~~~~~~e~~l~~~K~ 323 (334)
| -.+.++++++++.
T Consensus 270 D-~~g~~R~~~~~~~ 283 (284)
T TIGR00536 270 D-LNGKERVVLGFYH 283 (284)
T ss_pred C-CCCCceEEEEEec
Confidence 2 2257889988753
No 96
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.93 E-value=1.3e-09 Score=88.74 Aligned_cols=100 Identities=18% Similarity=0.282 Sum_probs=68.9
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCC-CCC-CccceEEechh
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFS-TYP-RTYDLIHAHGL 252 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~-~yp-~sFDlVha~~v 252 (334)
.+|||+|||+|.++.++++.+ ..+++++|+++..++.++.+ ++ +..++.....+. .++ ++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 589999999999999998876 35899999999888877654 22 111211111222 355 99999999966
Q ss_pred hcccc-----CcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 253 FSLYK-----DKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 253 fs~~~-----~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
+.... .......++.++.|+|||||.+++.-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 65321 11234689999999999999998754
No 97
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.92 E-value=5.2e-09 Score=101.18 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=87.9
Q ss_pred cccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc
Q 019879 153 ESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG 228 (334)
Q Consensus 153 e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~ 228 (334)
..|-.-+|---+.+..+.+.. .. +..+|||+|||+|-++.+-+..|+ ..|+++|+++..+..+.+. |+..
T Consensus 138 ~AFGTG~H~TT~lcl~~l~~~--~~--~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~ 211 (295)
T PF06325_consen 138 MAFGTGHHPTTRLCLELLEKY--VK--PGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVED 211 (295)
T ss_dssp SSS-SSHCHHHHHHHHHHHHH--SS--TTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TT
T ss_pred CcccCCCCHHHHHHHHHHHHh--cc--CCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCe
Confidence 356665565445565543222 23 246999999999998887777775 3699999999888877654 2211
Q ss_pred hhhhhcccCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEEec
Q 019879 229 IYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD 306 (334)
Q Consensus 229 ~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~~~ 306 (334)
... .. .....+ ..||+|+||-+.. -+..++.++.+.|+|||+||+|--.. ....|.+.++. .+......
T Consensus 212 ~~~-v~-~~~~~~~~~~dlvvANI~~~------vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 212 RIE-VS-LSEDLVEGKFDLVVANILAD------VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp CEE-ES-CTSCTCCS-EEEEEEES-HH------HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEE
T ss_pred eEE-EE-EecccccccCCEEEECCCHH------HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEE
Confidence 110 00 111233 8999999994332 24578889999999999999996433 44566666665 77665433
No 98
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.92 E-value=1.3e-08 Score=91.56 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=73.6
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcc-cCCCCCCccceEE
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCE-AFSTYPRTYDLIH 248 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e-~l~~yp~sFDlVh 248 (334)
+......+|||+|||+|.++..++... ....|+++|.++.++..+.++ ++ +......+. .+......+|.++
T Consensus 36 l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 36 LRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEE
Confidence 343445799999999999998887531 114699999999999877653 32 112211111 1111224467765
Q ss_pred echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcc
Q 019879 249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGM 298 (334)
Q Consensus 249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l 298 (334)
... ...++.++.++.|+|+|||.+++..... .+..+.+.++.+
T Consensus 115 ~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 115 IEG-------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred EEC-------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 431 2357899999999999999999987543 344455555444
No 99
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.90 E-value=2.1e-09 Score=94.29 Aligned_cols=73 Identities=16% Similarity=0.091 Sum_probs=57.3
Q ss_pred EeccCChhhHHHHHHcCc---------cchhhhhcccCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeE
Q 019879 209 VPTLADKNTLGVIYERGL---------IGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGA 278 (334)
Q Consensus 209 v~vD~s~~~L~~a~~Rgl---------i~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~ 278 (334)
+++|.|++||++|.+|.- +......++++ +++ ++||+|++..+++++. +...+|+|++|+|||||.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~ 76 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSR 76 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeE
Confidence 478999999999865521 22333445566 466 8999999999998864 578999999999999999
Q ss_pred EEEEeCh
Q 019879 279 IIIRDEV 285 (334)
Q Consensus 279 lii~D~~ 285 (334)
|++.|..
T Consensus 77 l~i~d~~ 83 (160)
T PLN02232 77 VSILDFN 83 (160)
T ss_pred EEEEECC
Confidence 9998754
No 100
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.90 E-value=1.5e-08 Score=102.09 Aligned_cols=137 Identities=12% Similarity=0.169 Sum_probs=89.6
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchh-hhhcccCCCCCCccceEEechhhc-
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIY-HDWCEAFSTYPRTYDLIHAHGLFS- 254 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~-~d~~e~l~~yp~sFDlVha~~vfs- 254 (334)
.+|||+|||+|.++..|+.... ..+|+++|+|+.|++.+.++ +. +... .|+.+...+..++||+|+|+-=+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 5899999999999988876321 14799999999999987664 22 1111 222222111226899999973110
Q ss_pred ----ccc-------------CcC----CHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEE--EecCCCCC
Q 019879 255 ----LYK-------------DKC----NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK--MVDHEDGP 311 (334)
Q Consensus 255 ----~~~-------------~~c----~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~--~~~~~~~~ 311 (334)
+.. ... .+..++.+..+.|+|||.+++--..+.-+.+++++....|... ..|.-
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~--- 408 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLA--- 408 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCC---
Confidence 000 000 1347788888999999999987666666778888877777543 22322
Q ss_pred CCCceEEEEEec
Q 019879 312 LVPEKILVAVKQ 323 (334)
Q Consensus 312 ~~~e~~l~~~K~ 323 (334)
+.++++++++.
T Consensus 409 -G~dR~v~~~~~ 419 (423)
T PRK14966 409 -GLDRVTLGKYM 419 (423)
T ss_pred -CCcEEEEEEEh
Confidence 57899998753
No 101
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.89 E-value=2.1e-08 Score=94.77 Aligned_cols=123 Identities=15% Similarity=0.272 Sum_probs=91.2
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCC-CCC-CccceEEec
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFS-TYP-RTYDLIHAH 250 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~-~yp-~sFDlVha~ 250 (334)
...+|||+|||+|..+.+|+++--. ..++++++.+.+.+.|.+- ++ +.++++....+. ..+ .+||+|+||
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 3689999999999999999887212 4689999998888776543 12 233333222222 234 679999998
Q ss_pred hh---------------hccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEE
Q 019879 251 GL---------------FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 303 (334)
Q Consensus 251 ~v---------------fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~ 303 (334)
== ..|+.-.++++.+++-..++|||||.+.+--..+-+..|-..+++++|...
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 21 112233467889999999999999999999999988888999999999875
No 102
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.88 E-value=5.7e-09 Score=97.87 Aligned_cols=105 Identities=12% Similarity=0.194 Sum_probs=79.2
Q ss_pred CceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCc------cchhhhhcccC---CCCCCccceEEec
Q 019879 181 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAF---STYPRTYDLIHAH 250 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgl------i~~~~d~~e~l---~~yp~sFDlVha~ 250 (334)
..+||.+|||.|+..--|++- +-...-|.+.|.|++.+.+..++-. ...+.|.+.+- ++.++++|+|++-
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 348999999999977666652 2112568999999999998776532 22344444432 2334999999999
Q ss_pred hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD 286 (334)
Q Consensus 251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~ 286 (334)
+||+.+. ...+..++..+.|+|||||.++++|--.
T Consensus 152 FvLSAi~-pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 152 FVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred EEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 9999764 4568999999999999999999998643
No 103
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.87 E-value=8.4e-09 Score=100.37 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=77.1
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc--hhhhhcccCCCCCCccceEEechh
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYHDWCEAFSTYPRTYDLIHAHGL 252 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~--~~~d~~e~l~~yp~sFDlVha~~v 252 (334)
....+|||.|||+|+++..+...+ ..++++|+++.|+..+..+ |+.. .....+..++..+++||+|+++--
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 345689999999999987766554 4689999999998865543 3322 222222333322389999999733
Q ss_pred hcc---cc-C--cCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccc
Q 019879 253 FSL---YK-D--KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRW 300 (334)
Q Consensus 253 fs~---~~-~--~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W 300 (334)
+.. .. + ......+|.++.|+|||||++++..+.. ..+++.+....|
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 321 00 0 0124789999999999999998876654 133445566666
No 104
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.85 E-value=1.6e-08 Score=95.29 Aligned_cols=128 Identities=13% Similarity=0.170 Sum_probs=85.8
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCC-CCCccceEEechhh--
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YPRTYDLIHAHGLF-- 253 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~-yp~sFDlVha~~vf-- 253 (334)
..+|||+|||+|.++..|+.... ...|+++|.++.+++.+.+. |..-...|+.+.++. +.++||+|+++-=+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 35899999999999998876411 14689999999999877653 211111122222211 23679999998311
Q ss_pred ----ccccC-------c------C----CHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEecCCC
Q 019879 254 ----SLYKD-------K------C----NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHED 309 (334)
Q Consensus 254 ----s~~~~-------~------c----~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~~~~ 309 (334)
..+.. . . -+..++....++|+|||.+++.-..+....+..++....++..+..|++
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence 11100 0 0 1347888888999999999998777666778888888888888776664
No 105
>PTZ00146 fibrillarin; Provisional
Probab=98.85 E-value=3.9e-08 Score=94.97 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=65.9
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChh----hHHHHHHcC-ccchhhhhcccC--CCCCCccceEEechh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKN----TLGVIYERG-LIGIYHDWCEAF--STYPRTYDLIHAHGL 252 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~----~L~~a~~Rg-li~~~~d~~e~l--~~yp~sFDlVha~~v 252 (334)
...+|||+|||+|.++..|++.-...-.|+++|+++. ++..+.+|. +..+..|..... .....+||+|++...
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC
Confidence 3479999999999999999885211125899999975 555665553 222333322111 111268999998853
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
+..+...++.+++|+|||||.|+|.
T Consensus 212 -----~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 212 -----QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred -----CcchHHHHHHHHHHhccCCCEEEEE
Confidence 1224556778999999999999995
No 106
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=2.4e-08 Score=95.77 Aligned_cols=138 Identities=19% Similarity=0.234 Sum_probs=89.6
Q ss_pred eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCCCccceEEec--hhhc--
Q 019879 183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLIHAH--GLFS-- 254 (334)
Q Consensus 183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp~sFDlVha~--~vfs-- 254 (334)
+|||+|||+|-.|.+|+..... .+|+++|+|++.+..|.+. |+.....-...-|....+.||+|+|| ++=.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCcc
Confidence 8999999999999999886432 5799999999999887543 43211111111233444799999998 1110
Q ss_pred -ccc--------------Cc---CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEecCCCCCCCCce
Q 019879 255 -LYK--------------DK---CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEK 316 (334)
Q Consensus 255 -~~~--------------~~---c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~ 316 (334)
+.. .. .....++.+..++|+|||.+++.......+.+++++....+...+..+. .-.+.++
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~-d~~g~~r 270 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLK-DLFGRDR 270 (280)
T ss_pred cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEe-cCCCceE
Confidence 110 00 1134789999999999999999887666677888877777421111122 1224666
Q ss_pred EEEEEe
Q 019879 317 ILVAVK 322 (334)
Q Consensus 317 ~l~~~K 322 (334)
+.++++
T Consensus 271 v~~~~~ 276 (280)
T COG2890 271 VVLAKL 276 (280)
T ss_pred EEEEEe
Confidence 666654
No 107
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.82 E-value=2.3e-08 Score=90.80 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=66.2
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCC-C-CccceE
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTY-P-RTYDLI 247 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~y-p-~sFDlV 247 (334)
+......+|||+|||+|.++..|+... ..|+++|.+++++..+.++ |+ +...+... ...+ + ++||+|
T Consensus 74 l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~~~fD~I 148 (212)
T PRK00312 74 LELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG--WKGWPAYAPFDRI 148 (212)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc--ccCCCcCCCcCEE
Confidence 344445799999999999998777653 2689999999998877654 32 11122111 1122 2 789999
Q ss_pred EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
+++..+++ +..++.+.|+|||.+++.-.
T Consensus 149 ~~~~~~~~---------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPE---------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchh---------hhHHHHHhcCCCcEEEEEEc
Confidence 99865443 34577899999999998755
No 108
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.79 E-value=4.5e-08 Score=94.95 Aligned_cols=115 Identities=19% Similarity=0.202 Sum_probs=74.7
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccC-CCCC-CccceEEech----
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLIHAHG---- 251 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l-~~yp-~sFDlVha~~---- 251 (334)
.+|||+|||+|.++..|+.... ..+|+++|+|+.++..+.+. |+...+.-.+.++ .+++ ++||+|+|+-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 6899999999999999987521 24799999999999977654 3311111111121 2334 6899999971
Q ss_pred --h-------hccccCc---------CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcc
Q 019879 252 --L-------FSLYKDK---------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGM 298 (334)
Q Consensus 252 --v-------fs~~~~~---------c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l 298 (334)
- +.|.+.. .....++.++.++|+|||.+++-.... ...+..++...
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 0 1111110 113578999999999999999965544 33466665543
No 109
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.78 E-value=4.3e-08 Score=101.09 Aligned_cols=138 Identities=15% Similarity=0.189 Sum_probs=86.9
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchhhhhccc-CCCCC-CccceEEech---
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYP-RTYDLIHAHG--- 251 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~-l~~yp-~sFDlVha~~--- 251 (334)
..+|||+|||+|.++..|+..- ....|+++|+|+.+++.+.+. ++...+.-.+.+ +..++ ++||+|+|+-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 4689999999999998887641 114799999999999987765 321111101111 22344 6899999962
Q ss_pred -----------hhcccc-----Cc----CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEecCCCCC
Q 019879 252 -----------LFSLYK-----DK----CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGP 311 (334)
Q Consensus 252 -----------vfs~~~-----~~----c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~~~~~~ 311 (334)
+..|.+ .. ..+..++.++.++|+|||.+++.-....-+.+..++....|.......+ -
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~D--~ 295 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKD--L 295 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEec--C
Confidence 111100 00 1134678899999999999999766555567777777777764322111 1
Q ss_pred CCCceEEEEE
Q 019879 312 LVPEKILVAV 321 (334)
Q Consensus 312 ~~~e~~l~~~ 321 (334)
.+.++++++.
T Consensus 296 ~g~~R~v~~~ 305 (506)
T PRK01544 296 QGHSRVILIS 305 (506)
T ss_pred CCCceEEEec
Confidence 1467777764
No 110
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.73 E-value=6.8e-08 Score=91.67 Aligned_cols=92 Identities=22% Similarity=0.422 Sum_probs=74.4
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc-hhhhhcccCCCCCCccceEEechhhccccC
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG-IYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 258 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~-~~~d~~e~l~~yp~sFDlVha~~vfs~~~~ 258 (334)
+..++||+|+|-|+..+.|+.. .-+|...++|..|.....+||... ...+|.+ -+..||+|-|-+|+ |
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~----~~~~fDvIscLNvL----D 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQ----TDFKFDVISCLNVL----D 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhc----cCCceEEEeehhhh----h
Confidence 4678999999999999999763 246899999999999889999732 2233432 23689999998887 4
Q ss_pred cC-CHHHHHHHHHHhhcCCeEEEEE
Q 019879 259 KC-NIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 259 ~c-~~~~~L~Em~RVLRPGG~lii~ 282 (334)
+| ++..+|.+|++.|+|+|.+++.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 67 4889999999999999999996
No 111
>PRK04457 spermidine synthase; Provisional
Probab=98.72 E-value=1.9e-07 Score=88.52 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=70.4
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-cc------chhhhhccc-CCCCCCccceEEec
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LI------GIYHDWCEA-FSTYPRTYDLIHAH 250 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-li------~~~~d~~e~-l~~yp~sFDlVha~ 250 (334)
...++|||+|||+|.++..++.... ...|+.+|+++++++.+.+.- +. .+++..+.. +...+.+||+|++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 3568999999999999998877521 257999999999999888752 21 112111111 22335789999986
Q ss_pred hhhccc--cCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 251 GLFSLY--KDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 251 ~vfs~~--~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. |+.. +.......++.++.++|+|||.+++.
T Consensus 144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3 3321 11112368999999999999999984
No 112
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.70 E-value=5e-08 Score=90.08 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=77.8
Q ss_pred cccchhhhhhHHHHHHHHHHH------------hhcCC-CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHH
Q 019879 153 ESYQEDSNKWKKHVNAYKKIN------------RLLDS-GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG 219 (334)
Q Consensus 153 e~f~~d~~~W~~~v~~y~~ll------------~~l~~-~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~ 219 (334)
+.|.+|-+.|...-.-|.... ..|.. .....|-|+|||-+.+|..+.+. ..|...|.-...
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~----~~V~SfDLva~n-- 105 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK----HKVHSFDLVAPN-- 105 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-SS--
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC----ceEEEeeccCCC--
Confidence 567777776665555554432 22222 23468999999999999877543 346777764211
Q ss_pred HHHHcCccchhhhhcccCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh---hHHHHHHHH
Q 019879 220 VIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIV 295 (334)
Q Consensus 220 ~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~~~ 295 (334)
+ . .+..|. ... |.+ ++.|++++...|. ..++..++.|.+|||||||.|+|.+-.. .++..-+.+
T Consensus 106 ---~-~--Vtacdi-a~v-PL~~~svDv~VfcLSLM----GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~ 173 (219)
T PF05148_consen 106 ---P-R--VTACDI-ANV-PLEDESVDVAVFCLSLM----GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKAL 173 (219)
T ss_dssp ---T-T--EEES-T-TS--S--TT-EEEEEEES-------SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHH
T ss_pred ---C-C--EEEecC-ccC-cCCCCceeEEEEEhhhh----CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHH
Confidence 1 1 112221 233 455 9999998874443 3568999999999999999999998654 234444558
Q ss_pred hcccceEEEecCC
Q 019879 296 GGMRWDTKMVDHE 308 (334)
Q Consensus 296 ~~l~W~~~~~~~~ 308 (334)
.++.++....|..
T Consensus 174 ~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 174 KKLGFKLKSKDES 186 (219)
T ss_dssp HCTTEEEEEEE--
T ss_pred HHCCCeEEecccC
Confidence 8889988876654
No 113
>PRK00811 spermidine synthase; Provisional
Probab=98.69 E-value=7.1e-08 Score=92.37 Aligned_cols=105 Identities=11% Similarity=0.132 Sum_probs=69.7
Q ss_pred CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC------c-----cchhhhhcccC-CCCCCccc
Q 019879 178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-----IGIYHDWCEAF-STYPRTYD 245 (334)
Q Consensus 178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg------l-----i~~~~d~~e~l-~~yp~sFD 245 (334)
..+.++|||+|||.|+++..+++.. .+.+|+.+|+++.+++.+.+.- + +..++..+..+ ...+++||
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 3457899999999999999998762 2357999999999999887631 1 11111111111 12237999
Q ss_pred eEEechhhccccCc-CCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 246 LIHAHGLFSLYKDK-CNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 246 lVha~~vfs~~~~~-c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
+|++...-...... ---+.+++++.|+|+|||.+++.-
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 99986422211100 012578899999999999999863
No 114
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=2e-07 Score=94.08 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=70.7
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCC-CC-CccceEE
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFST-YP-RTYDLIH 248 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~-yp-~sFDlVh 248 (334)
+......+|||+|||+|+.+..+++.... ..|+++|.++.++..+.++ |+ +......+..++. ++ ++||.|+
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEE
Confidence 44445679999999999999999875321 4699999999999877654 32 1111111222222 34 7899999
Q ss_pred ech------hhcccc------CcCC-------HHHHHHHHHHhhcCCeEEEEEeC
Q 019879 249 AHG------LFSLYK------DKCN-------IEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 249 a~~------vfs~~~------~~c~-------~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++. ++.+-+ +..+ ...+|.+..++|||||.+++++.
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 432 221110 0011 23789999999999999999873
No 115
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=1.7e-07 Score=94.64 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=78.5
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCC----CCCCccc
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFS----TYPRTYD 245 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~----~yp~sFD 245 (334)
+......+|||+|||+|+.+.+|++.--....|+++|.++.+++.+.++ |+. .........++ .++++||
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence 4444457999999999999988877411113699999999999876553 431 22211122222 1237999
Q ss_pred eEEec------hhhccccC------cCC-------HHHHHHHHHHhhcCCeEEEEEeCh----hhHHHHHHHHhcc-cce
Q 019879 246 LIHAH------GLFSLYKD------KCN-------IEDILLEMDRILRPEGAIIIRDEV----DEIIKVKKIVGGM-RWD 301 (334)
Q Consensus 246 lVha~------~vfs~~~~------~c~-------~~~~L~Em~RVLRPGG~lii~D~~----~~~~~i~~~~~~l-~W~ 301 (334)
.|++. .++.+-++ ..+ ...+|.++.++|||||.|+.++-. +....|+.+++.. .|.
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 99963 34433221 011 357899999999999999988632 3334555555543 344
No 116
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.64 E-value=1.1e-07 Score=86.80 Aligned_cols=128 Identities=15% Similarity=0.232 Sum_probs=74.0
Q ss_pred cchhhhhhHHHHHHHH-HHHhhcCCCCCceEeeecccccH----HHHHHHh--C--CCcEEEEEeccCChhhHHHHHHcC
Q 019879 155 YQEDSNKWKKHVNAYK-KINRLLDSGRYRNIMDMNAGFGG----FAAAIQS--S--KLWVMNVVPTLADKNTLGVIYERG 225 (334)
Q Consensus 155 f~~d~~~W~~~v~~y~-~ll~~l~~~~~r~VLD~GCG~G~----faa~L~~--~--~v~v~nVv~vD~s~~~L~~a~~Rg 225 (334)
|-.|...|....+... .++.....++.-+|..+||++|. +|..|.+ . ..+-..|.++|+++.+|+.|.+ |
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~-G 83 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA-G 83 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH-T
T ss_pred ccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh-C
Confidence 4556666655555432 12222233456899999999995 5555555 1 2234789999999999987643 2
Q ss_pred c---------cc---------------------------hhhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHH
Q 019879 226 L---------IG---------------------------IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEM 269 (334)
Q Consensus 226 l---------i~---------------------------~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em 269 (334)
. .. ..|+..+ .++..+.||+|+|.+||-++. ......++..+
T Consensus 84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~l 161 (196)
T PF01739_consen 84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRRL 161 (196)
T ss_dssp EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHHH
T ss_pred CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHHH
Confidence 1 00 0122222 122339999999999999874 34567999999
Q ss_pred HHhhcCCeEEEEEeCh
Q 019879 270 DRILRPEGAIIIRDEV 285 (334)
Q Consensus 270 ~RVLRPGG~lii~D~~ 285 (334)
++.|+|||+|++....
T Consensus 162 ~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 162 HRSLKPGGYLFLGHSE 177 (196)
T ss_dssp GGGEEEEEEEEE-TT-
T ss_pred HHHcCCCCEEEEecCc
Confidence 9999999999998653
No 117
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.63 E-value=1.5e-07 Score=94.76 Aligned_cols=108 Identities=22% Similarity=0.227 Sum_probs=71.0
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchh--hh-hcccCCCC-C-Cccce
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIY--HD-WCEAFSTY-P-RTYDL 246 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~--~d-~~e~l~~y-p-~sFDl 246 (334)
+......+|||+|||+|+.+.++++.-- ...|+++|.++.++..+.++ |+.... .+ .....+++ + ++||.
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDR 312 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCE
Confidence 4444568999999999999998887421 24699999999999876544 432111 11 01111221 3 78999
Q ss_pred EEec------hhhccccCc------CC-------HHHHHHHHHHhhcCCeEEEEEeC
Q 019879 247 IHAH------GLFSLYKDK------CN-------IEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 247 Vha~------~vfs~~~~~------c~-------~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
|++. .++.+.++- .+ ...+|.++.|+|||||.+++++.
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9853 345432210 00 24799999999999999999863
No 118
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.62 E-value=1.1e-07 Score=96.25 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=70.4
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCCC-CCccceEE
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFSTY-PRTYDLIH 248 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~y-p~sFDlVh 248 (334)
++.....+|||+|||+|+.+.++++.-.-...|+++|.++.++..+.++ |+. ...+.....++.+ +++||.|.
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl 312 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRIL 312 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEE
Confidence 3444557999999999999888876410113699999999999877654 431 1222212223323 37899998
Q ss_pred ech---hhccccCcC----------------CHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 249 AHG---LFSLYKDKC----------------NIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 249 a~~---vfs~~~~~c----------------~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
+.. .+..+.... ...++|.+..+.|||||.++.++.
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 641 122111000 114679999999999999999874
No 119
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.61 E-value=1.9e-07 Score=91.30 Aligned_cols=95 Identities=14% Similarity=0.009 Sum_probs=62.8
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCCCCCccceEEechhh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFSTYPRTYDLIHAHGLF 253 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~yp~sFDlVha~~vf 253 (334)
...+|||+|||+|.+++.|++.......|+++|.++++++.+.++ |+. ...+..+....+....||+|++...+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~ 159 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGV 159 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCch
Confidence 447999999999999999887421112489999999999877653 331 11111111111222689999987433
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
. .+...+.++|+|||.+++..
T Consensus 160 ~---------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 160 D---------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred H---------HhHHHHHHhcCCCCEEEEEe
Confidence 2 23445788999999988854
No 120
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.61 E-value=2.1e-07 Score=88.32 Aligned_cols=105 Identities=12% Similarity=0.158 Sum_probs=69.9
Q ss_pred CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC--c--------cchhh-hhcccCCCCCCccc
Q 019879 177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--L--------IGIYH-DWCEAFSTYPRTYD 245 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg--l--------i~~~~-d~~e~l~~yp~sFD 245 (334)
...+.++||++|||+|+++..+++.. .+.+++.+|+++++++.+.+.- + +.... |-.+-+...+++||
T Consensus 69 ~~~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 69 THPNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred cCCCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 34456799999999999998888764 2357999999999988776531 0 00111 10010111247999
Q ss_pred eEEechhhccccCcCC--HHHHHHHHHHhhcCCeEEEEEe
Q 019879 246 LIHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 246 lVha~~vfs~~~~~c~--~~~~L~Em~RVLRPGG~lii~D 283 (334)
+|++........ ... ...+++.+.|+|+|||.+++..
T Consensus 148 vIi~D~~~~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 148 VIIVDSTDPVGP-AETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEEEeCCCCCCc-ccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 999875422111 112 3578899999999999999864
No 121
>PRK01581 speE spermidine synthase; Validated
Probab=98.59 E-value=6e-07 Score=89.26 Aligned_cols=148 Identities=10% Similarity=0.043 Sum_probs=87.5
Q ss_pred CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc-Cc------------cchhhhhccc-CCCCCC
Q 019879 177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GL------------IGIYHDWCEA-FSTYPR 242 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-gl------------i~~~~d~~e~-l~~yp~ 242 (334)
...+.++||++|||+|..++.+++.+ .+.+|+.+|++++++++|.+. .+ +......+.. +...++
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 34557899999999999988888754 246799999999999998852 11 0111111111 122237
Q ss_pred ccceEEechhhcc--ccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-----hhHHHHHHHHhcccceEEEecCCCCCCC-C
Q 019879 243 TYDLIHAHGLFSL--YKDKCNIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDHEDGPLV-P 314 (334)
Q Consensus 243 sFDlVha~~vfs~--~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~~~~~l~W~~~~~~~~~~~~~-~ 314 (334)
+||+|++...-.. .....--..++..+.|.|+|||.+++.... +.+..+.+.++.....+..+..---+.. .
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~ 305 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTD 305 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCc
Confidence 8999998832110 000011247899999999999999887542 2223344444444444443322111111 1
Q ss_pred ceEEEEEeccc
Q 019879 315 EKILVAVKQYW 325 (334)
Q Consensus 315 e~~l~~~K~~w 325 (334)
=.+++|.|.-.
T Consensus 306 WgF~~as~~~~ 316 (374)
T PRK01581 306 WGFHIAANSAY 316 (374)
T ss_pred eEEEEEeCCcc
Confidence 45777777544
No 122
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.59 E-value=1.2e-07 Score=92.97 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=70.4
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC---------------ccc-hhhhhcc--cC-CCC
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---------------LIG-IYHDWCE--AF-STY 240 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg---------------li~-~~~d~~e--~l-~~y 240 (334)
...+|||||||-||=.......++ ..++++|++...++.|.+|- ... .+...|- .+ ..+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 568999999999997666666553 57999999999999888874 000 0111110 00 112
Q ss_pred C---CccceEEechhhccc-cCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879 241 P---RTYDLIHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRDEVD 286 (334)
Q Consensus 241 p---~sFDlVha~~vfs~~-~~~c~~~~~L~Em~RVLRPGG~lii~D~~~ 286 (334)
+ ..||+|-|...||+. ........+|.-+.+.|||||+||.+.+..
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 2 599999999889874 333356789999999999999999997654
No 123
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.57 E-value=2e-07 Score=86.20 Aligned_cols=103 Identities=18% Similarity=0.284 Sum_probs=74.0
Q ss_pred hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccch-hhhhcccCCCCCCccceEEechhh
Q 019879 175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGI-YHDWCEAFSTYPRTYDLIHAHGLF 253 (334)
Q Consensus 175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~-~~d~~e~l~~yp~sFDlVha~~vf 253 (334)
.....+.++|||+|+|+|.++.+++++.-. ..++-.|.. ..++.+.+..-+.. -+|. |.++|. +|+++.+++|
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~vL 168 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDLP-EVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRHVL 168 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE-H-HHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEESSG
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCC-CcceeeccH-hhhhccccccccccccccH---Hhhhcc-ccceeeehhh
Confidence 445667789999999999999999874222 357778884 67776666221211 1111 245667 9999999999
Q ss_pred ccccCcCCHHHHHHHHHHhhcCC--eEEEEEeC
Q 019879 254 SLYKDKCNIEDILLEMDRILRPE--GAIIIRDE 284 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPG--G~lii~D~ 284 (334)
|++.+ .+...+|+.+.+.|+|| |.|+|.|.
T Consensus 169 h~~~d-~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 169 HDWSD-EDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GGS-H-HHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhcch-HHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 98763 46779999999999999 99999874
No 124
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.57 E-value=3e-07 Score=87.07 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=69.2
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCCCccceEEe
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDLIHA 249 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp~sFDlVha 249 (334)
+......+|||+|||+|+.+..|++.-.....|+++|.++.+++.+.++ |+ +...+..+..++...+.||.|++
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 3334457899999999999988876311112599999999998876543 33 12222222223222367999986
Q ss_pred ch------hhccccC------cCC-------HHHHHHHHHHhhcCCeEEEEEeC
Q 019879 250 HG------LFSLYKD------KCN-------IEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 250 ~~------vfs~~~~------~c~-------~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
.- ++.+-++ ..+ ...+|.+..+.|||||.|+.++.
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 41 2221110 001 13699999999999999999864
No 125
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.57 E-value=2.9e-07 Score=93.20 Aligned_cols=109 Identities=20% Similarity=0.195 Sum_probs=69.6
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCC-CCCCccceEE
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFS-TYPRTYDLIH 248 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~-~yp~sFDlVh 248 (334)
+...+..+|||+|||+|+++..+++.-.....|+++|+++++++.+.++ |+. ...+.....++ +++++||+|+
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl 325 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKIL 325 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEE
Confidence 3334457899999999999988887411113699999999998876553 431 22221111222 3458999998
Q ss_pred ech------hhccccC------cCC-------HHHHHHHHHHhhcCCeEEEEEeC
Q 019879 249 AHG------LFSLYKD------KCN-------IEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 249 a~~------vfs~~~~------~c~-------~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++. ++.+-++ ..+ ...+|.++.|+|||||.++.+..
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 752 2221110 011 13689999999999999998753
No 126
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=2.5e-07 Score=93.80 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=68.6
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCCCCCccceEEe
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFSTYPRTYDLIHA 249 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~yp~sFDlVha 249 (334)
+......+|||+|||+|+.+..+++.-.-...|+++|.++.+++.+.++ |+. .........++ .+++||+|++
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILL 324 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEE
Confidence 4444457999999999998887776311113699999999999876544 431 12211112221 1278999985
Q ss_pred c------hhhcccc------CcCC-------HHHHHHHHHHhhcCCeEEEEEeC
Q 019879 250 H------GLFSLYK------DKCN-------IEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 250 ~------~vfs~~~------~~c~-------~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
. .++.+-+ ...+ ...+|.++.++|||||.+++++.
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3 2222110 0011 23689999999999999999973
No 127
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.53 E-value=2.9e-07 Score=83.79 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=72.5
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH----cCccc--hhhhhccc-CC-CCC-CccceEEechh
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIG--IYHDWCEA-FS-TYP-RTYDLIHAHGL 252 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~----Rgli~--~~~d~~e~-l~-~yp-~sFDlVha~~v 252 (334)
..+||+|||.|.|...++..... .|++|+|.....+..+.+ +++.. .++..+.. +. .++ +++|-|+.+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~-- 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN-- 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE--
T ss_pred CeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe--
Confidence 38999999999999999885322 589999999876664433 35421 11111111 11 134 999999886
Q ss_pred hc-------cccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcc
Q 019879 253 FS-------LYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGM 298 (334)
Q Consensus 253 fs-------~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l 298 (334)
|. |.+.+---..+|.++.|+|+|||.|.+.+.. ++.+.+.+.+...
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 33 2222222358999999999999999997655 4666666665553
No 128
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.52 E-value=4.8e-07 Score=96.77 Aligned_cols=123 Identities=14% Similarity=0.157 Sum_probs=80.5
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc----chhh-hhcccCCCCCCccceEEech
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI----GIYH-DWCEAFSTYPRTYDLIHAHG 251 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli----~~~~-d~~e~l~~yp~sFDlVha~~ 251 (334)
.++|||+|||+|+|+.+++..|.. .|+++|.|+.+++.+.+. |+. ..++ |..+.+..+.++||+|+++-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 479999999999999999987643 599999999999977653 331 1111 21111111357899999861
Q ss_pred -hhccccC-------cCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEe
Q 019879 252 -LFSLYKD-------KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMV 305 (334)
Q Consensus 252 -vfs~~~~-------~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~ 305 (334)
.|..... ..+...++....++|+|||.+++......+....+.+....+.+...
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence 1111000 11345788889999999999999876654444345555556666543
No 129
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.50 E-value=9.6e-07 Score=82.39 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=64.8
Q ss_pred CCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Ccc---chhhh-hcccCCC----C-CCcc
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLI---GIYHD-WCEAFST----Y-PRTY 244 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d-~~e~l~~----y-p~sF 244 (334)
.+.++|||+|||+|.-+..|+.. +. ...|+.+|.+++++..|.+. |+. ..... ..+.++. . ..+|
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 34689999999999866666542 11 13699999999988877553 331 11111 1111111 2 3689
Q ss_pred ceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 245 DlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
|+|+...- ......++.++.|.|||||.+++.+
T Consensus 146 D~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 146 DFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 99988621 2345678999999999999988753
No 130
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.7e-06 Score=83.80 Aligned_cols=121 Identities=17% Similarity=0.280 Sum_probs=78.1
Q ss_pred hhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchhhhhccc-CCCCCCccceEE
Q 019879 174 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYPRTYDLIH 248 (334)
Q Consensus 174 ~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~-l~~yp~sFDlVh 248 (334)
+.+......+|||+|||+|-+++.|++..- ...|+-+|.+...++.+++. ++.+. .-|..+ +.+-..+||+|+
T Consensus 152 ~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v~~kfd~Ii 229 (300)
T COG2813 152 ETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPVEGKFDLII 229 (300)
T ss_pred HhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccccccccEEE
Confidence 334333334999999999999999998643 24689999987777766542 22221 111111 122226999999
Q ss_pred echhhccccCcC--CHHHHHHHHHHhhcCCeEEEEEeCh--hhHHHHHHHHh
Q 019879 249 AHGLFSLYKDKC--NIEDILLEMDRILRPEGAIIIRDEV--DEIIKVKKIVG 296 (334)
Q Consensus 249 a~~vfs~~~~~c--~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~~~~ 296 (334)
||-=||--.+-. -.+.++.+-.+-|++||.|.|--+. .+-.++++++.
T Consensus 230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred eCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence 997776322111 1248899999999999988876552 24556666555
No 131
>PLN02366 spermidine synthase
Probab=98.50 E-value=5.4e-07 Score=87.65 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=68.3
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC------c----cchhhhhccc-CCCCC-Cccce
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L----IGIYHDWCEA-FSTYP-RTYDL 246 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg------l----i~~~~d~~e~-l~~yp-~sFDl 246 (334)
.+.++||++|||.|+++..+++.+ .+..|+.+|+++.+++.+++.- + +..+...+.. +...+ +.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 457899999999999999998863 3467888999988888876641 1 1111111111 12233 78999
Q ss_pred EEechhhccccCcC-CHHHHHHHHHHhhcCCeEEEEE
Q 019879 247 IHAHGLFSLYKDKC-NIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 247 Vha~~vfs~~~~~c-~~~~~L~Em~RVLRPGG~lii~ 282 (334)
|++...-.+..... --..+++.+.|.|+|||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 99864322211000 1247899999999999999874
No 132
>PHA03411 putative methyltransferase; Provisional
Probab=98.49 E-value=3.4e-07 Score=87.90 Aligned_cols=98 Identities=9% Similarity=0.117 Sum_probs=69.0
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCC--CCccceEEechhhcccc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTY--PRTYDLIHAHGLFSLYK 257 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~y--p~sFDlVha~~vfs~~~ 257 (334)
..+|||+|||+|.++..++.+.. ..+|+++|+++.|++.++++-. +... +.++..+ +++||+|+++--|.|+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v---~~D~~e~~~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWI---TSDVFEFESNEKFDVVISNPPFGKIN 140 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEE---ECchhhhcccCCCcEEEEcCCccccC
Confidence 46899999999999888876421 1479999999999998876521 1111 1222222 37899999987777642
Q ss_pred Cc--CC---------------HHHHHHHHHHhhcCCeEEEEE
Q 019879 258 DK--CN---------------IEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 258 ~~--c~---------------~~~~L~Em~RVLRPGG~lii~ 282 (334)
.. .+ +...+....++|+|+|.+++.
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 11 11 357888999999999987664
No 133
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.48 E-value=5.8e-07 Score=79.60 Aligned_cols=140 Identities=17% Similarity=0.150 Sum_probs=78.2
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhh---------cccCCCCCCccce
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDW---------CEAFSTYPRTYDL 246 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~---------~e~l~~yp~sFDl 246 (334)
+..+...+|||+||++|||+..+.++......|+++|..+. -.. ++......|. .+.+..-...||+
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dl 94 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-DPL---QNVSFIQGDITNPENIKDIRKLLPESGEKFDL 94 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-GS----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-ccc---cceeeeecccchhhHHHhhhhhccccccCcce
Confidence 44446699999999999999999998745578999999743 111 1211111111 1111111168999
Q ss_pred EEechhhccccCc--------CCHHHHHHHHHHhhcCCeEEEEEe-----ChhhHHHHHHHHhcccceEEEecCCCCCCC
Q 019879 247 IHAHGLFSLYKDK--------CNIEDILLEMDRILRPEGAIIIRD-----EVDEIIKVKKIVGGMRWDTKMVDHEDGPLV 313 (334)
Q Consensus 247 Vha~~vfs~~~~~--------c~~~~~L~Em~RVLRPGG~lii~D-----~~~~~~~i~~~~~~l~W~~~~~~~~~~~~~ 313 (334)
|+|...+..-.++ .-....|.=+...|||||.+++-- ..+.+..++..++.+++. .+ .-.++..
T Consensus 95 v~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~--Kp-~~sr~~s 171 (181)
T PF01728_consen 95 VLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV--KP-PSSRSES 171 (181)
T ss_dssp EEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE--E--TTSBTTC
T ss_pred eccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE--EC-cCCCCCc
Confidence 9998643321100 011244444557799999888853 234566666666665442 21 2233446
Q ss_pred CceEEEEEe
Q 019879 314 PEKILVAVK 322 (334)
Q Consensus 314 ~e~~l~~~K 322 (334)
.|.||||++
T Consensus 172 ~E~Ylv~~~ 180 (181)
T PF01728_consen 172 SEEYLVCRG 180 (181)
T ss_dssp BEEEEESEE
T ss_pred cEEEEEEcC
Confidence 899999875
No 134
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.48 E-value=4.6e-07 Score=82.31 Aligned_cols=111 Identities=13% Similarity=0.192 Sum_probs=73.1
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHH----HHcCcc---chh-hhhcccCCCCCCccceEEechhh
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVI----YERGLI---GIY-HDWCEAFSTYPRTYDLIHAHGLF 253 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a----~~Rgli---~~~-~d~~e~l~~yp~sFDlVha~~vf 253 (334)
.+|||+|||.|.+...|++.++. -.++++|.|+..+..| .++|+. ... .|...+ -.+++.||+|+=-..+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCce
Confidence 49999999999999999998764 3489999999887744 444553 221 222222 1234888888754433
Q ss_pred ccc---cCc--CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHH
Q 019879 254 SLY---KDK--CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKI 294 (334)
Q Consensus 254 s~~---~~~--c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~ 294 (334)
-.+ ++. ..+...+--+.++|+|||+|+|+.-.-...++.+.
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~ 192 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEE 192 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHH
Confidence 321 111 12346778889999999999999765444443333
No 135
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.47 E-value=4.2e-07 Score=79.94 Aligned_cols=101 Identities=11% Similarity=0.130 Sum_probs=66.1
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----cchhhhhcccCCCCC-CccceEEec
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYP-RTYDLIHAH 250 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----i~~~~d~~e~l~~yp-~sFDlVha~ 250 (334)
+......+|||+|||+|.++..|++++ ..|+++|.++.+++.+.++-. +..++..+..+ +++ .+||.|+++
T Consensus 9 ~~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~-~~~~~~~d~vi~n 84 (169)
T smart00650 9 ANLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKF-DLPKLQPYKVVGN 84 (169)
T ss_pred cCCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcC-CccccCCCEEEEC
Confidence 344445789999999999999999874 469999999999998876521 22233222333 244 569999988
Q ss_pred hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
.-++. . ...+..++.+.. +.++|.+++...
T Consensus 85 ~Py~~-~-~~~i~~~l~~~~--~~~~~~l~~q~e 114 (169)
T smart00650 85 LPYNI-S-TPILFKLLEEPP--AFRDAVLMVQKE 114 (169)
T ss_pred CCccc-H-HHHHHHHHhcCC--CcceEEEEEEHH
Confidence 54432 1 122344444322 568899988753
No 136
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.46 E-value=3.7e-07 Score=85.27 Aligned_cols=99 Identities=8% Similarity=0.021 Sum_probs=73.5
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc-Ccc--------------chhhhhcccCCCCC---
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLI--------------GIYHDWCEAFSTYP--- 241 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-gli--------------~~~~d~~e~l~~yp--- 241 (334)
...+||+.|||.|.-+.+|+++|. +|+++|+|+..++.++++ ++. ..+.-+|.+|-.++
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 347999999999999999999985 699999999888876552 110 01112233332221
Q ss_pred ---CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 242 ---RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 242 ---~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
+.||+|+=...|.+++ ...-.+.+.-|.++|+|||.+++-
T Consensus 120 ~~~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred cccCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5799999888898885 334578999999999999987664
No 137
>PRK03612 spermidine synthase; Provisional
Probab=98.46 E-value=8.6e-07 Score=91.78 Aligned_cols=124 Identities=13% Similarity=0.106 Sum_probs=79.8
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-c------------cchhhhhccc-CCCCCCcc
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L------------IGIYHDWCEA-FSTYPRTY 244 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-l------------i~~~~d~~e~-l~~yp~sF 244 (334)
.+.++|||+|||+|..+..+++++ .+..|+.+|+++++++.+++.. + +......+.. +...+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 356899999999999999888764 2357999999999999988731 1 1111111111 12234899
Q ss_pred ceEEechhhccccCcC--CHHHHHHHHHHhhcCCeEEEEEeC-----hhhHHHHHHHHhcccceEE
Q 019879 245 DLIHAHGLFSLYKDKC--NIEDILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTK 303 (334)
Q Consensus 245 DlVha~~vfs~~~~~c--~~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~~~~~l~W~~~ 303 (334)
|+|+++.......... --+.+++++.|.|||||.+++... .+....+.+.+++....+.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 9999983322111000 124688999999999999999643 2344455555666655444
No 138
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.46 E-value=1.6e-06 Score=82.56 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=70.8
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhccccCc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDK 259 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~ 259 (334)
...|-|+|||-+.+|..-. ..|..+++++++.. + +..|. ... |.+ +|.|++++-..|. .
T Consensus 181 ~~vIaD~GCGEakiA~~~~-~kV~SfDL~a~~~~-----------V--~~cDm-~~v-Pl~d~svDvaV~CLSLM----g 240 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASSER-HKVHSFDLVAVNER-----------V--IACDM-RNV-PLEDESVDVAVFCLSLM----G 240 (325)
T ss_pred ceEEEecccchhhhhhccc-cceeeeeeecCCCc-----------e--eeccc-cCC-cCccCcccEEEeeHhhh----c
Confidence 3579999999998775211 23444445444321 1 11111 123 455 9999987763332 3
Q ss_pred CCHHHHHHHHHHhhcCCeEEEEEeChh---hHHHHHHHHhcccceEEEecCC
Q 019879 260 CNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDTKMVDHE 308 (334)
Q Consensus 260 c~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~~~~~l~W~~~~~~~~ 308 (334)
.++.+++.|.+|||||||.++|.+-.. .+....+-+.+|.+++...|..
T Consensus 241 tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 241 TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 578999999999999999999998654 2344555588899988766554
No 139
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.45 E-value=6.2e-06 Score=74.94 Aligned_cols=144 Identities=21% Similarity=0.255 Sum_probs=93.3
Q ss_pred CCCccccchh--hhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc--
Q 019879 149 GVSAESYQED--SNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-- 224 (334)
Q Consensus 149 g~~~e~f~~d--~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-- 224 (334)
+...+.|..+ .-.-|+-+..- .++.|...+...++|+|||||+.+..++..+ -...|+++|.++++++.+.+.
T Consensus 3 gipD~~F~~~~~~p~TK~EIRal--~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~ 79 (187)
T COG2242 3 GIPDELFERDEGGPMTKEEIRAL--TLSKLRPRPGDRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAA 79 (187)
T ss_pred CCCchhhccCCCCCCcHHHHHHH--HHHhhCCCCCCEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHH
Confidence 3445566666 23334555442 2334566667899999999999988887322 125799999998888865432
Q ss_pred --Ccc--chhhhhc-ccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC-hhhHHHHHHHHhcc
Q 019879 225 --GLI--GIYHDWC-EAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGM 298 (334)
Q Consensus 225 --gli--~~~~d~~-e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~~~~~l 298 (334)
|.. .....++ +.++.++ +||.|+...- -.++.+|......|||||.+++.-- .+....+-+.++.+
T Consensus 80 ~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg-------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~ 151 (187)
T COG2242 80 RFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG-------GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQL 151 (187)
T ss_pred HhCCCcEEEEeccchHhhcCCC-CCCEEEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence 321 1222222 2233344 8999988743 3578999999999999999999853 44555555667777
Q ss_pred cc-eEE
Q 019879 299 RW-DTK 303 (334)
Q Consensus 299 ~W-~~~ 303 (334)
.+ ++.
T Consensus 152 g~~ei~ 157 (187)
T COG2242 152 GGREIV 157 (187)
T ss_pred CCceEE
Confidence 77 544
No 140
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.43 E-value=4.1e-07 Score=84.37 Aligned_cols=102 Identities=20% Similarity=0.303 Sum_probs=69.1
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc-----Cccc-hhhhhcccCCCCCCccceEEechhh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----GLIG-IYHDWCEAFSTYPRTYDLIHAHGLF 253 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-----gli~-~~~d~~e~l~~yp~sFDlVha~~vf 253 (334)
...+.||.|||.|..+..|+-+-+. .|.-+|..+..++.|.+. +-++ .+..--+++-|-+++||+|++..++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~--~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFD--EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-S--EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcC--EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4689999999999999988766443 355566777888888742 1122 2221123444445899999999999
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
.|+.+ .++..+|+.+...|+|+|.+++-++
T Consensus 133 ghLTD-~dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 133 GHLTD-EDLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp GGS-H-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCH-HHHHHHHHHHHHhCcCCcEEEEEec
Confidence 99974 6889999999999999999999865
No 141
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.42 E-value=1.5e-06 Score=67.39 Aligned_cols=95 Identities=21% Similarity=0.319 Sum_probs=61.5
Q ss_pred EeeecccccHHH--HHHHhCCCcEEEEEeccCChhhHHHHHHcCc------cchh-hhhcccCCCCCC--ccceEEechh
Q 019879 184 IMDMNAGFGGFA--AAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIY-HDWCEAFSTYPR--TYDLIHAHGL 252 (334)
Q Consensus 184 VLD~GCG~G~fa--a~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl------i~~~-~d~~e~l~~yp~--sFDlVha~~v 252 (334)
++|+|||+|... +.+...+ ..++++|.++.++..+..+.. +... .+......++.. +||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRG---AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCC---ceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999854 3333332 356779999888887444331 1111 121111124443 89999 5544
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
..+... ....+.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 433322 789999999999999999998764
No 142
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.41 E-value=1.4e-06 Score=88.15 Aligned_cols=121 Identities=17% Similarity=0.320 Sum_probs=77.1
Q ss_pred HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhh-hhcccCC--CCC-
Q 019879 172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYH-DWCEAFS--TYP- 241 (334)
Q Consensus 172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~-d~~e~l~--~yp- 241 (334)
++..+......+|||+|||+|.++..|++.. ..|+++|.|+.|++.+.+. |+ +.... |..+.+. +++
T Consensus 289 vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~ 365 (443)
T PRK13168 289 ALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWAL 365 (443)
T ss_pred HHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhc
Confidence 3333443345799999999999999998875 3689999999999987653 32 11111 2212121 243
Q ss_pred CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhH-HHHHHHHhcccceEE
Q 019879 242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEI-IKVKKIVGGMRWDTK 303 (334)
Q Consensus 242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~~~~~l~W~~~ 303 (334)
++||+|+++ +.+..+..++..+.+ |+|++.++++=++..+ .-+..+.. -.|++.
T Consensus 366 ~~fD~Vi~d------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~ 420 (443)
T PRK13168 366 GGFDKVLLD------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLK 420 (443)
T ss_pred CCCCEEEEC------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEE
Confidence 789999886 334445566666655 6999999999655533 23444432 235544
No 143
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.39 E-value=4.6e-07 Score=83.59 Aligned_cols=102 Identities=18% Similarity=0.150 Sum_probs=62.0
Q ss_pred HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC--Cc
Q 019879 172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP--RT 243 (334)
Q Consensus 172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp--~s 243 (334)
++..+.-....+|||+|||+|.+++.|...-..+..|+++|..+...+.|.++ |+ +...+..+ ...++ ..
T Consensus 64 ~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg--~~g~~~~ap 141 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDG--SEGWPEEAP 141 (209)
T ss_dssp HHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G--GGTTGGG-S
T ss_pred HHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcch--hhccccCCC
Confidence 34434444558999999999999988876311123588999998777776654 32 12222111 12233 78
Q ss_pred cceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 244 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 244 FDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
||.|+++..... +. .++.+-|||||.+++--.
T Consensus 142 fD~I~v~~a~~~------ip---~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 142 FDRIIVTAAVPE------IP---EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEEESSBBSS-----------HHHHHTEEEEEEEEEEES
T ss_pred cCEEEEeeccch------HH---HHHHHhcCCCcEEEEEEc
Confidence 999999855432 22 356677999999998544
No 144
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.36 E-value=1e-06 Score=85.02 Aligned_cols=123 Identities=15% Similarity=0.220 Sum_probs=81.5
Q ss_pred cccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccH----HHHHHHhC-C--CcEEEEEeccCChhhHHHHHHc-
Q 019879 153 ESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG----FAAAIQSS-K--LWVMNVVPTLADKNTLGVIYER- 224 (334)
Q Consensus 153 e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~----faa~L~~~-~--v~v~nVv~vD~s~~~L~~a~~R- 224 (334)
-.|=.|...|....+.. .. ....-+|..+||.||. +|..|.+. + ..-..|+++|+++.+|+.|.+-
T Consensus 94 T~FFRd~~~f~~L~~~~---~~---~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~ 167 (287)
T PRK10611 94 TAFFREAHHFPILAEHA---RR---RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI 167 (287)
T ss_pred CCccCCcHHHHHHHHHH---Hh---cCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence 45666667765544331 11 1223699999999995 55555552 1 1135799999999999876431
Q ss_pred -------Ccc----------------c--------------hhhhhcccCCCCC--CccceEEechhhccccCcCCHHHH
Q 019879 225 -------GLI----------------G--------------IYHDWCEAFSTYP--RTYDLIHAHGLFSLYKDKCNIEDI 265 (334)
Q Consensus 225 -------gli----------------~--------------~~~d~~e~l~~yp--~sFDlVha~~vfs~~~~~c~~~~~ 265 (334)
++. + ..|+..+ +++| +.||+|+|.+||.|+. ......+
T Consensus 168 Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~--~~~~~~~~fD~I~cRNvliyF~-~~~~~~v 244 (287)
T PRK10611 168 YRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLA--KQWAVPGPFDAIFCRNVMIYFD-KTTQERI 244 (287)
T ss_pred CCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCC--CCCccCCCcceeeHhhHHhcCC-HHHHHHH
Confidence 110 0 0112111 1343 8999999999999874 3467899
Q ss_pred HHHHHHhhcCCeEEEEEeC
Q 019879 266 LLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 266 L~Em~RVLRPGG~lii~D~ 284 (334)
+..+++.|+|||+|++...
T Consensus 245 l~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 245 LRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred HHHHHHHhCCCcEEEEeCc
Confidence 9999999999999988764
No 145
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.34 E-value=1.5e-06 Score=84.16 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=73.4
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCC-CCCccceEEechh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFST-YPRTYDLIHAHGL 252 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~-yp~sFDlVha~~v 252 (334)
...+|||+|||+|.++..|+.++ ..|+++|.++.+++.+.+. |+ +..+....+.+.. ..+.||+|+++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d-- 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN-- 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence 34789999999999999999876 3699999999999876543 33 1122211222221 23679999987
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhh-HHHHHHHHhcccceEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDE-IIKVKKIVGGMRWDTK 303 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~~~~~l~W~~~ 303 (334)
+.+..+...+.++-.-++|++.++++-.+.. ...++.+ -.|+..
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~ 292 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL---PGYRIE 292 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc---cCcEEE
Confidence 4444444455555566899999999876653 3334444 245554
No 146
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.33 E-value=1.8e-06 Score=80.76 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=70.3
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-------cch-hhhhcccCCCCC-CccceEEec
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------IGI-YHDWCEAFSTYP-RTYDLIHAH 250 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-------i~~-~~d~~e~l~~yp-~sFDlVha~ 250 (334)
...+|||+|||||+|+..|+++|+ ..|+++|.+++|+........ ... +.+|.+ +. .+ ..||+++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~-~~-~d~~~~DvsfiS 150 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPAD-IF-PDFATFDVSFIS 150 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhH-cC-CCceeeeEEEee
Confidence 457899999999999999999874 469999999888875322211 001 112222 21 23 577877766
Q ss_pred hhhccccCcCCHHHHHHHHHHhhcCCeEEEEE-------------------eC---hhhHHHHHHHHhcccceEE
Q 019879 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR-------------------DE---VDEIIKVKKIVGGMRWDTK 303 (334)
Q Consensus 251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~-------------------D~---~~~~~~i~~~~~~l~W~~~ 303 (334)
. ..+|..|.+.|+| |.+++- |. ...++++...+..+.|.+.
T Consensus 151 ~-----------~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 151 L-----------ISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred h-----------HhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 2 2367788888888 766653 21 1245666666777888765
No 147
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.28 E-value=2.6e-06 Score=79.03 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=82.4
Q ss_pred CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH-cCccch--------------hhhhcccCCCCC-
Q 019879 178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE-RGLIGI--------------YHDWCEAFSTYP- 241 (334)
Q Consensus 178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~-Rgli~~--------------~~d~~e~l~~yp- 241 (334)
.....+||+-|||.|.-+.+|+++| .+|+++|+|+..++.+++ +++... +.-+|.+|-.++
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 3445799999999999999999998 589999999988888754 343110 011233442222
Q ss_pred ---CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEE--EeC--------h-h-hHHHHHHHHhcccceEEE
Q 019879 242 ---RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII--RDE--------V-D-EIIKVKKIVGGMRWDTKM 304 (334)
Q Consensus 242 ---~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii--~D~--------~-~-~~~~i~~~~~~l~W~~~~ 304 (334)
++||+|+=...|.-++ ...-++..+-|.++|+|||.+++ .+. + . ..+.|+.++. -.|++..
T Consensus 112 ~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~ 187 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEE 187 (218)
T ss_dssp SCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEE
T ss_pred hhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEE
Confidence 5799998777776654 45668999999999999999333 221 1 1 2356777776 7777653
No 148
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.27 E-value=2.8e-06 Score=82.97 Aligned_cols=114 Identities=14% Similarity=0.163 Sum_probs=78.0
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc---------c---chhhhhcc-----cCCCCC
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---------I---GIYHDWCE-----AFSTYP 241 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl---------i---~~~~d~~e-----~l~~yp 241 (334)
.++..+||+|||-||=+...-..++ -.++++|++.-.++.|..|-- + ..+...|- .+..++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 3567899999999996655555443 468999998777877766521 1 11111121 122345
Q ss_pred -CccceEEechhhccc-cCcCCHHHHHHHHHHhhcCCeEEEEEeChh--hHHHHHHH
Q 019879 242 -RTYDLIHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKI 294 (334)
Q Consensus 242 -~sFDlVha~~vfs~~-~~~c~~~~~L~Em~RVLRPGG~lii~D~~~--~~~~i~~~ 294 (334)
.+||+|-|.+.||+. ........+|+-+.+.|||||+||-+-+.. ++.+++..
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 559999999888763 333456689999999999999999987654 56666655
No 149
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.25 E-value=5.4e-06 Score=83.50 Aligned_cols=118 Identities=12% Similarity=0.203 Sum_probs=75.4
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhccc-CCC--CC-Cccc
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEA-FST--YP-RTYD 245 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~-l~~--yp-~sFD 245 (334)
+......+|||+|||+|.++..|++.. ..|+++|.++.+++.+.+. |+ +..++..++. ++. +. ++||
T Consensus 288 l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 288 LELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred hccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCC
Confidence 333344689999999999999998764 3689999999999877653 32 1122222222 222 22 6899
Q ss_pred eEEechhhccccCcCC-HHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEE
Q 019879 246 LIHAHGLFSLYKDKCN-IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 303 (334)
Q Consensus 246 lVha~~vfs~~~~~c~-~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~ 303 (334)
+|+.+ +.+.. ...++.++.+ |+|+|.++++-.+..+.+--+.+....|++.
T Consensus 365 ~vi~d------PPr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 365 VLLLD------PPRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred EEEEC------cCCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 99876 22333 3566666655 8999999998766655443333444456554
No 150
>PHA03412 putative methyltransferase; Provisional
Probab=98.25 E-value=3.2e-06 Score=79.65 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=63.1
Q ss_pred CceEeeecccccHHHHHHHhCC--CcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCC--CCCccceEEechhhcc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSK--LWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFST--YPRTYDLIHAHGLFSL 255 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~--v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~--yp~sFDlVha~~vfs~ 255 (334)
..+|||+|||+|.++..++.+- ....+|+++|+++.++..+.+.-. +... ..++.. ++.+||+|++|==|.-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~---~~D~~~~~~~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWI---NADALTTEFDTLFDMAISNPPFGK 126 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEE---EcchhcccccCCccEEEECCCCCC
Confidence 3699999999999999887631 012479999999999998875421 1111 123222 3479999999832221
Q ss_pred c--cC------cCC-HHHHHHHHHHhhcCCeEEEE
Q 019879 256 Y--KD------KCN-IEDILLEMDRILRPEGAIII 281 (334)
Q Consensus 256 ~--~~------~c~-~~~~L~Em~RVLRPGG~lii 281 (334)
. .+ ... ...++....|.|+||++ |+
T Consensus 127 ~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 127 IKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 1 01 112 34688888898888886 44
No 151
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.24 E-value=1.7e-05 Score=73.13 Aligned_cols=135 Identities=19% Similarity=0.303 Sum_probs=90.0
Q ss_pred eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHH----HHcCcc----chhhhhccc-------CCCCCCccceE
Q 019879 183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVI----YERGLI----GIYHDWCEA-------FSTYPRTYDLI 247 (334)
Q Consensus 183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a----~~Rgli----~~~~d~~e~-------l~~yp~sFDlV 247 (334)
+||.||||||.-+.+++..=-. +.-.|.|.....+.-+ .+.|+. ....|.++. .+.++++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999988888874211 3578999886665432 233442 122232222 11234799999
Q ss_pred EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC---------------------------hhhHHHHHHHHhcccc
Q 019879 248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE---------------------------VDEIIKVKKIVGGMRW 300 (334)
Q Consensus 248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~---------------------------~~~~~~i~~~~~~l~W 300 (334)
+|.+++|-. .+...+.+|.+..|+|+|||.|++.-+ .+.++.+..++.....
T Consensus 107 ~~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINMLHIS-PWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 999999654 466778999999999999999999621 1245667777777666
Q ss_pred eEEEecCCCCCCCCceEEEEEe
Q 019879 301 DTKMVDHEDGPLVPEKILVAVK 322 (334)
Q Consensus 301 ~~~~~~~~~~~~~~e~~l~~~K 322 (334)
.... ..+-| ..+++||.+|
T Consensus 186 ~l~~--~~~MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELEE--DIDMP-ANNLLLVFRK 204 (204)
T ss_pred ccCc--ccccC-CCCeEEEEeC
Confidence 5431 11122 3578899887
No 152
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.22 E-value=7.2e-06 Score=82.43 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=64.7
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc----chhh-hhcccCCCC---CCccceEE
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI----GIYH-DWCEAFSTY---PRTYDLIH 248 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli----~~~~-d~~e~l~~y---p~sFDlVh 248 (334)
..+|||+|||+|+|+.+.+..+. ..|+++|.++.+++.+.+. |+. ...+ |..+.+..+ .++||+|+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 47899999999999877665553 3699999999999876543 331 1111 111111112 25899999
Q ss_pred echh-hcccc-----CcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 249 AHGL-FSLYK-----DKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 249 a~~v-fs~~~-----~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++-= |..-. .......++.-..++|+|||.|+....
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9821 11000 001244566677899999999998654
No 153
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.18 E-value=1.1e-06 Score=82.61 Aligned_cols=98 Identities=12% Similarity=0.234 Sum_probs=76.1
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc---CccchhhhhcccCCCCC-CccceEEechhhcc
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---GLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSL 255 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R---gli~~~~d~~e~l~~yp-~sFDlVha~~vfs~ 255 (334)
....++|+|||.|..+.+|+..++ ..++-+|.|.+|++.+.+- +++..+..--|.+.+|. ++||+|+++..+|.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 356899999999999999999874 5789999999999877654 33322222225555676 99999999977764
Q ss_pred ccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 256 YKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 256 ~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. .++...|..++-+|||.|.||-+
T Consensus 150 ~---NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 150 T---NDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred h---ccCchHHHHHHHhcCCCccchhH
Confidence 3 25778999999999999999876
No 154
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.18 E-value=6.6e-06 Score=76.96 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=73.8
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHH----HHHHcCc--cchhhhhccc-CCC-CC-CccceEEechh
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG----VIYERGL--IGIYHDWCEA-FST-YP-RTYDLIHAHGL 252 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~----~a~~Rgl--i~~~~d~~e~-l~~-yp-~sFDlVha~~v 252 (334)
..+|+||||.|.|...++++... .|++|+++....+. .+.+.|+ +..+...+.. +.. ++ +|.|-|+-+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~-- 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN-- 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE--
Confidence 47999999999999999986543 48999998766554 4455565 2222222222 222 34 599999876
Q ss_pred hc-------cccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHH-HHHH
Q 019879 253 FS-------LYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIK-VKKI 294 (334)
Q Consensus 253 fs-------~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~-i~~~ 294 (334)
|. |.+.+---..+|.++.|+|+|||.|.+.+..+ +.+. +...
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~ 177 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEV 177 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHH
Confidence 54 22222223589999999999999999976654 4444 4444
No 155
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.14 E-value=6.7e-06 Score=83.91 Aligned_cols=149 Identities=17% Similarity=0.275 Sum_probs=75.7
Q ss_pred CCCcccccCCCCCccCCCCCCCCccccchhhhhhHHHHHHHHH-HHhhcCCC----CCceEeeecccccHHHHHHHhCC-
Q 019879 129 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKK-INRLLDSG----RYRNIMDMNAGFGGFAAAIQSSK- 202 (334)
Q Consensus 129 ~~wP~Rl~~~p~~l~~~~~~g~~~e~f~~d~~~W~~~v~~y~~-ll~~l~~~----~~r~VLD~GCG~G~faa~L~~~~- 202 (334)
.++..+|..+..=|+. .+...+.|.|+.|.-.-...-.+-.. +...+... +...|||+|||+|.+..+.++.+
T Consensus 131 ~~~~d~Lq~PLqPl~d-nL~s~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~ 209 (448)
T PF05185_consen 131 SGYEDYLQAPLQPLMD-NLESQTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGA 209 (448)
T ss_dssp ------EE----TTTS----HHHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTH
T ss_pred hhchhhccCCCCCchh-hhccccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHH
Confidence 3555566654333332 13334678999997753222222111 22223332 24679999999999875554432
Q ss_pred --CcEEEEEeccCChhhHHHH----HHcCc---cchhhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhh
Q 019879 203 --LWVMNVVPTLADKNTLGVI----YERGL---IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRIL 273 (334)
Q Consensus 203 --v~v~nVv~vD~s~~~L~~a----~~Rgl---i~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVL 273 (334)
.....|.+++.++++.... .+.|+ +.+++...+.+ ..|...|+|++-. |..+.+.+-+...|.-.+|.|
T Consensus 210 ~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v-~lpekvDIIVSEl-LGsfg~nEl~pE~Lda~~rfL 287 (448)
T PF05185_consen 210 RAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV-ELPEKVDIIVSEL-LGSFGDNELSPECLDAADRFL 287 (448)
T ss_dssp HHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS-CHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGE
T ss_pred HhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC-CCCCceeEEEEec-cCCccccccCHHHHHHHHhhc
Confidence 1235789999886654332 33343 33444433433 2357999999873 333333445667899999999
Q ss_pred cCCeEEE
Q 019879 274 RPEGAII 280 (334)
Q Consensus 274 RPGG~li 280 (334)
||||.+|
T Consensus 288 kp~Gi~I 294 (448)
T PF05185_consen 288 KPDGIMI 294 (448)
T ss_dssp EEEEEEE
T ss_pred CCCCEEe
Confidence 9999865
No 156
>PRK04148 hypothetical protein; Provisional
Probab=98.13 E-value=1.2e-05 Score=69.54 Aligned_cols=94 Identities=17% Similarity=0.329 Sum_probs=67.2
Q ss_pred CCCCCceEeeecccccH-HHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC--CccceEEechhh
Q 019879 177 DSGRYRNIMDMNAGFGG-FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--RTYDLIHAHGLF 253 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~-faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp--~sFDlVha~~vf 253 (334)
...+..+|||+|||+|. +|..|.+.| .+|+++|.++..++.+.+++......|+.+ +.+. ..+|+|.+.
T Consensus 13 ~~~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~--p~~~~y~~a~liysi--- 84 (134)
T PRK04148 13 EKGKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKLGLNAFVDDLFN--PNLEIYKNAKLIYSI--- 84 (134)
T ss_pred ccccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhCCeEEECcCCC--CCHHHHhcCCEEEEe---
Confidence 33345789999999996 899999887 479999999999998988886544444333 2333 789999885
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
....++...+.++.+-+ |.-++|..
T Consensus 85 ---rpp~el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 85 ---RPPRDLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred ---CCCHHHHHHHHHHHHHc--CCCEEEEc
Confidence 22345667777777644 44566654
No 157
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.12 E-value=1.1e-05 Score=75.97 Aligned_cols=139 Identities=24% Similarity=0.282 Sum_probs=91.4
Q ss_pred hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHH----HcCc----cchhh-hhcccCCCCC-Ccc
Q 019879 175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY----ERGL----IGIYH-DWCEAFSTYP-RTY 244 (334)
Q Consensus 175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~----~Rgl----i~~~~-d~~e~l~~yp-~sF 244 (334)
.++..+..+|||...|.|.+|..-+++|+ ..|.-++-+++.|+.|. .|+| +.+.+ |..+....|+ .||
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 34455678999999999999999999986 24666666677777653 2344 22233 3233445688 889
Q ss_pred ceEEec-hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC--------hhhHHHHHHHHhcccceEEEecCCCCCCCCc
Q 019879 245 DLIHAH-GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE--------VDEIIKVKKIVGGMRWDTKMVDHEDGPLVPE 315 (334)
Q Consensus 245 DlVha~-~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~--------~~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e 315 (334)
|+|+-. -=||+.- .---+.+-+|++|||||||.++=... .+...++.+.+.+..+.+.....+
T Consensus 207 DaIiHDPPRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~------- 278 (287)
T COG2521 207 DAIIHDPPRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVRE------- 278 (287)
T ss_pred ceEeeCCCccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehh-------
Confidence 988543 2233321 01135889999999999999887542 245677888888888886544333
Q ss_pred eE-EEEEec
Q 019879 316 KI-LVAVKQ 323 (334)
Q Consensus 316 ~~-l~~~K~ 323 (334)
.+ ++|+|+
T Consensus 279 ~~gv~A~k~ 287 (287)
T COG2521 279 ALGVVAVKP 287 (287)
T ss_pred ccceEEecC
Confidence 33 666663
No 158
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.12 E-value=5.4e-06 Score=82.51 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=77.4
Q ss_pred chhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---c
Q 019879 156 QEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---G 228 (334)
Q Consensus 156 ~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~ 228 (334)
.+....| .+..++..+...+..+ ..++|+|||.|+...++..-. ..++++++.++..+..+... ++- .
T Consensus 89 ~~~~~~~-~~~~~~~~l~~~~~~~--~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~ 163 (364)
T KOG1269|consen 89 NSNEMFW-IRHEGIVALRESCFPG--SKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCN 163 (364)
T ss_pred hHHHHHH-HhhcchHHHhhcCccc--ccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcc
Confidence 3333444 3333444343334443 489999999999888877643 24678888876554433221 110 0
Q ss_pred hhhhhcccCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 229 IYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 229 ~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
....|+-. .+|+ ++||.+-+..+..|.+ +...++.|++|||+|||+++..+
T Consensus 164 ~~~~~~~~-~~fedn~fd~v~~ld~~~~~~---~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 164 FVVADFGK-MPFEDNTFDGVRFLEVVCHAP---DLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred eehhhhhc-CCCCccccCcEEEEeecccCC---cHHHHHHHHhcccCCCceEEeHH
Confidence 12223333 3566 9999999988888865 47899999999999999999864
No 159
>PLN02672 methionine S-methyltransferase
Probab=98.11 E-value=1.4e-05 Score=88.98 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=76.9
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc------------------cchh-hhhcccC
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL------------------IGIY-HDWCEAF 237 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl------------------i~~~-~d~~e~l 237 (334)
..+|||+|||+|.++..|+.+.. ...|+++|+|+++++.|.+. ++ +..+ .|+.+.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 35899999999999999987531 13699999999999877432 11 1111 1332222
Q ss_pred CCCCCccceEEec--hhhc------------ccc--------CcCC-------------HHHHHHHHHHhhcCCeEEEEE
Q 019879 238 STYPRTYDLIHAH--GLFS------------LYK--------DKCN-------------IEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 238 ~~yp~sFDlVha~--~vfs------------~~~--------~~c~-------------~~~~L~Em~RVLRPGG~lii~ 282 (334)
......||+|++| ++-. |-+ ..+. +..++.+..++|||||++++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1011269999997 1110 100 0111 257899999999999999998
Q ss_pred eChhhHHHHH-HHHhcccceE
Q 019879 283 DEVDEIIKVK-KIVGGMRWDT 302 (334)
Q Consensus 283 D~~~~~~~i~-~~~~~l~W~~ 302 (334)
-..+.-+.+. +++....|..
T Consensus 278 iG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 278 MGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred ECccHHHHHHHHHHHHCCCCe
Confidence 7766556666 4665544543
No 160
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.10 E-value=1.1e-05 Score=80.37 Aligned_cols=110 Identities=11% Similarity=0.207 Sum_probs=71.8
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCC-CCCccceEEechhh
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFST-YPRTYDLIHAHGLF 253 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~-yp~sFDlVha~~vf 253 (334)
..+|||++||+|.|+..++.++ ..|+++|.++.+++.+.+. |+ +..+....+.+.. ....||+|+.+
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D--- 307 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN--- 307 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC---
Confidence 4689999999999999999765 3699999999999877653 22 1111111112211 22569999887
Q ss_pred ccccCcCCH-HHHHHHHHHhhcCCeEEEEEeChhhHH-HHHHHHhcccceEE
Q 019879 254 SLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVDEII-KVKKIVGGMRWDTK 303 (334)
Q Consensus 254 s~~~~~c~~-~~~L~Em~RVLRPGG~lii~D~~~~~~-~i~~~~~~l~W~~~ 303 (334)
+.+..+ ..++..+ .-++|++.++++-.+..+. -++.+ ..|+++
T Consensus 308 ---PPr~G~~~~~l~~l-~~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~ 352 (374)
T TIGR02085 308 ---PPRRGIGKELCDYL-SQMAPKFILYSSCNAQTMAKDIAEL---SGYQIE 352 (374)
T ss_pred ---CCCCCCcHHHHHHH-HhcCCCeEEEEEeCHHHHHHHHHHh---cCceEE
Confidence 444433 3444444 4589999999998776443 35554 346655
No 161
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=2.7e-06 Score=81.66 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=69.5
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhccccCc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDK 259 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~ 259 (334)
...++|+|||.|-+ +...+. .-+++.|.+...+..+.+.|-....-..+-.+ |++ .+||.+.+..|+||+..+
T Consensus 46 gsv~~d~gCGngky---~~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~-p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKY---LGVNPL--CLIIGCDLCTGLLGGAKRSGGDNVCRADALKL-PFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCccc---CcCCCc--ceeeecchhhhhccccccCCCceeehhhhhcC-CCCCCccccchhhhhhhhhhhH
Confidence 47899999999963 222221 24788998876666666655421221112233 565 999999999999999887
Q ss_pred CCHHHHHHHHHHhhcCCeEEEEE
Q 019879 260 CNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 260 c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
+.-..+++|+-|+|||||...+.
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEE
Confidence 77889999999999999986554
No 162
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.08 E-value=8e-05 Score=67.57 Aligned_cols=134 Identities=19% Similarity=0.349 Sum_probs=81.8
Q ss_pred hhhhhHHHHHHHHHHHhhcCCCCCceEeeeccccc--HHHHHHHhCCCcEEEEEeccCChhhHH----HHHHcCcc--ch
Q 019879 158 DSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFG--GFAAAIQSSKLWVMNVVPTLADKNTLG----VIYERGLI--GI 229 (334)
Q Consensus 158 d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G--~faa~L~~~~v~v~nVv~vD~s~~~L~----~a~~Rgli--~~ 229 (334)
..+.|.+++.+-..++..+..... +++|+|+|.| |+..+++... .+++-+|....-.. ++.+-||. .+
T Consensus 27 ~~~~~~~Hi~DSL~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~---~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v 102 (184)
T PF02527_consen 27 PEEIWERHILDSLALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPD---LQVTLVESVGKKVAFLKEVVRELGLSNVEV 102 (184)
T ss_dssp HHHHHHHHHHHHHGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TT---SEEEEEESSHHHHHHHHHHHHHHT-SSEEE
T ss_pred HHHHHHHHHHHHHHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCC---CcEEEEeCCchHHHHHHHHHHHhCCCCEEE
Confidence 356666666443333333443322 7999999999 4445555444 35888888755433 33344653 34
Q ss_pred hhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhh---HHHHHHHHhcccceEE
Q 019879 230 YHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDE---IIKVKKIVGGMRWDTK 303 (334)
Q Consensus 230 ~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~---~~~i~~~~~~l~W~~~ 303 (334)
++.-+|. ..++.+||+|+|..| ..+..++.-+.+.|+|||.+++.-.... ++..+...+.+.++..
T Consensus 103 ~~~R~E~-~~~~~~fd~v~aRAv-------~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 103 INGRAEE-PEYRESFDVVTARAV-------APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp EES-HHH-TTTTT-EEEEEEESS-------SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred EEeeecc-cccCCCccEEEeehh-------cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 5555566 446699999999744 3467888889999999999999876543 3444555666666654
No 163
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.08 E-value=1.2e-05 Score=83.04 Aligned_cols=112 Identities=11% Similarity=0.164 Sum_probs=73.4
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHH----HHHcCccch--hhhhccc-CCCCC-CccceEEech
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV----IYERGLIGI--YHDWCEA-FSTYP-RTYDLIHAHG 251 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~----a~~Rgli~~--~~d~~e~-l~~yp-~sFDlVha~~ 251 (334)
....+||+|||.|.|+..++...-. .|++|+|....-+.. +.++|+... +....+. ...|+ +++|-|+.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~- 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL- 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE-
Confidence 4578999999999999999986433 589999998765443 344454211 1111111 12366 999999887
Q ss_pred hhc-------cccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHH
Q 019879 252 LFS-------LYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKI 294 (334)
Q Consensus 252 vfs-------~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~ 294 (334)
|. |.+.+---..+|.++.|+|||||.+.+.+.. ++...+...
T Consensus 425 -FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~ 474 (506)
T PRK01544 425 -FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIEL 474 (506)
T ss_pred -CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH
Confidence 43 2222222358999999999999998887554 455543333
No 164
>PLN02476 O-methyltransferase
Probab=98.07 E-value=3.6e-05 Score=74.13 Aligned_cols=134 Identities=18% Similarity=0.239 Sum_probs=84.5
Q ss_pred CCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHH----cCcc---chhhhhc-ccCCCC-----CC
Q 019879 177 DSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYE----RGLI---GIYHDWC-EAFSTY-----PR 242 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~----Rgli---~~~~d~~-e~l~~y-----p~ 242 (334)
...+.++||++|+|+|..+.+|+.. +-. ..|+.+|.+++++++|.+ -|+. ....+.+ +.++.+ ++
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~-G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPES-GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCC
Confidence 3345689999999999999888762 111 248999999888876643 2442 1111111 112212 36
Q ss_pred ccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-----------h-hHHHHHHH----HhcccceEEEec
Q 019879 243 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------D-EIIKVKKI----VGGMRWDTKMVD 306 (334)
Q Consensus 243 sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-----------~-~~~~i~~~----~~~l~W~~~~~~ 306 (334)
+||+|+... +..+...++..+.+.|||||.+++.+.. + ....|+++ ...=++.+.+.-
T Consensus 194 ~FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llP 267 (278)
T PLN02476 194 SYDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVP 267 (278)
T ss_pred CCCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEE
Confidence 899998762 2334678899999999999999886421 1 11234443 555567776653
Q ss_pred CCCCCCCCceEEEEEec
Q 019879 307 HEDGPLVPEKILVAVKQ 323 (334)
Q Consensus 307 ~~~~~~~~e~~l~~~K~ 323 (334)
. .+++++++|.
T Consensus 268 i------gDGl~i~~K~ 278 (278)
T PLN02476 268 I------GDGMTICRKR 278 (278)
T ss_pred e------CCeeEEEEEC
Confidence 2 3568888874
No 165
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.05 E-value=3.4e-05 Score=73.92 Aligned_cols=105 Identities=20% Similarity=0.284 Sum_probs=74.8
Q ss_pred CCceEeeecccccH----HHHHHHhCCC----cEEEEEeccCChhhHHHHHH---------cCccch-------------
Q 019879 180 RYRNIMDMNAGFGG----FAAAIQSSKL----WVMNVVPTLADKNTLGVIYE---------RGLIGI------------- 229 (334)
Q Consensus 180 ~~r~VLD~GCG~G~----faa~L~~~~v----~v~nVv~vD~s~~~L~~a~~---------Rgli~~------------- 229 (334)
+.-+|.-+||+||. +|..|.+... +.+.|.++|++...|+.|.. +++...
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999995 5666665432 45789999999988886532 222110
Q ss_pred --------------hhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879 230 --------------YHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD 286 (334)
Q Consensus 230 --------------~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~ 286 (334)
.|+..++ +++++-||+|+|.+|+-++. ...-.+++..++..|+|||+|++-....
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~-~~~~~~fD~IfCRNVLIYFd-~~~q~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDD-SPFLGKFDLIFCRNVLIYFD-EETQERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred EEEChHHhcccEEeecCCCCC-ccccCCCCEEEEcceEEeeC-HHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence 1111111 12668899999999998764 4456799999999999999999976543
No 166
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.01 E-value=3.6e-05 Score=70.52 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=61.5
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhh-hhcccCCCCCCccceEEechhh
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYH-DWCEAFSTYPRTYDLIHAHGLF 253 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~-d~~e~l~~yp~sFDlVha~~vf 253 (334)
..+|||+|||+|.++..++.++. ..|+++|.++.+++.+.+. |+ +..+. |..+.++....+||+|+++-=|
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 36899999999999986555543 4799999998888766542 22 11111 2222221123579999998222
Q ss_pred ccccCcCC-HHHHHHHHHH--hhcCCeEEEEEeChh
Q 019879 254 SLYKDKCN-IEDILLEMDR--ILRPEGAIIIRDEVD 286 (334)
Q Consensus 254 s~~~~~c~-~~~~L~Em~R--VLRPGG~lii~D~~~ 286 (334)
+.. .+.++.-+.. +|+|+|++++.....
T Consensus 132 -----~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 132 -----RKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred -----CCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 222 2344444433 479999999986553
No 167
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.98 E-value=3.5e-05 Score=71.78 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=88.4
Q ss_pred CCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Cccc---hhh--hhcccCC-CCCCccc
Q 019879 177 DSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIG---IYH--DWCEAFS-TYPRTYD 245 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli~---~~~--d~~e~l~-~yp~sFD 245 (334)
.....++||.+|.+.|.-+..|+.. +. -..++.+|.++++.+.|++- |+.. ... +..+.+. ....+||
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCcc
Confidence 3345789999999999888777763 11 12589999999998877653 3311 122 3333343 2459999
Q ss_pred eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC--------h------hhHHHHHHHHhcccceEEEecCCCCC
Q 019879 246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE--------V------DEIIKVKKIVGGMRWDTKMVDHEDGP 311 (334)
Q Consensus 246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~--------~------~~~~~i~~~~~~l~W~~~~~~~~~~~ 311 (334)
+|+... +..+-..+|.+.-+.|||||.+++.+- . ....+++.+...+.++..... .--|
T Consensus 135 liFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-~~lP 207 (219)
T COG4122 135 LVFIDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDT-VLLP 207 (219)
T ss_pred EEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCcee-EEEe
Confidence 998762 234457899999999999999998641 1 234456666555555432110 0011
Q ss_pred CCCceEEEEEec
Q 019879 312 LVPEKILVAVKQ 323 (334)
Q Consensus 312 ~~~e~~l~~~K~ 323 (334)
..+.++++.|.
T Consensus 208 -~gDGl~v~~k~ 218 (219)
T COG4122 208 -LGDGLLLSRKR 218 (219)
T ss_pred -cCCceEEEeec
Confidence 23678888885
No 168
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.95 E-value=9.3e-05 Score=71.64 Aligned_cols=129 Identities=19% Similarity=0.288 Sum_probs=91.4
Q ss_pred CCCCCceEeeecccccHHHHHHHh-CCCcEEEEEeccCChhhHH----HHHHcCccch---hhhhccc---CCCCCCccc
Q 019879 177 DSGRYRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLG----VIYERGLIGI---YHDWCEA---FSTYPRTYD 245 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~faa~L~~-~~v~v~nVv~vD~s~~~L~----~a~~Rgli~~---~~d~~e~---l~~yp~sFD 245 (334)
..+..-+||||.||.|.+....++ .+.....|.-.|.|+..++ .+.+|||..+ ....|=+ +....-..+
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 346678999999999997655544 3332457899999988776 6788898543 2211111 111224568
Q ss_pred eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh--hhHHHHHHHHhc----ccceEEEe
Q 019879 246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--DEIIKVKKIVGG----MRWDTKMV 305 (334)
Q Consensus 246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~~~~~----l~W~~~~~ 305 (334)
+++.+.+|..+.+..-+...|.-+.++|.|||++|.+-.+ -.++-|...+.+ .-|.++..
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence 9999999999886555678899999999999999999743 356667777766 36877654
No 169
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.6e-05 Score=71.21 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=65.4
Q ss_pred HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC--Ccc
Q 019879 173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP--RTY 244 (334)
Q Consensus 173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp--~sF 244 (334)
+..|......+||++|||+|..+|-|++-. ..|+.++..+...+.|+++ |+ +.+.+. +..--|+ .-|
T Consensus 65 ~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g--DG~~G~~~~aPy 139 (209)
T COG2518 65 LQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG--DGSKGWPEEAPY 139 (209)
T ss_pred HHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC--CcccCCCCCCCc
Confidence 334555566899999999999998888853 3688888886655666543 33 222221 1122344 789
Q ss_pred ceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 245 DlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
|.|+.+.....++ . -+.+-|||||.+++=-.
T Consensus 140 D~I~Vtaaa~~vP------~---~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 140 DRIIVTAAAPEVP------E---ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CEEEEeeccCCCC------H---HHHHhcccCCEEEEEEc
Confidence 9999886665443 2 23457999999998655
No 170
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.93 E-value=8.8e-05 Score=68.29 Aligned_cols=133 Identities=18% Similarity=0.193 Sum_probs=82.8
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH----cCcc---chhhh-hcccCCC----C-CCccc
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLI---GIYHD-WCEAFST----Y-PRTYD 245 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~----Rgli---~~~~d-~~e~l~~----y-p~sFD 245 (334)
.+.++||.+||++|.-+.+|++.-.....|+.+|.++.+.++|.+ -|+. ..... -.+-++. . +++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 356899999999999888888631111368999999888877643 2442 11111 1111111 2 26899
Q ss_pred eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-------------h--hHH-HHHHHHhcccceEEEecCCC
Q 019879 246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------------D--EII-KVKKIVGGMRWDTKMVDHED 309 (334)
Q Consensus 246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-------------~--~~~-~i~~~~~~l~W~~~~~~~~~ 309 (334)
+|+... +..+....+..+.+.|||||.+++.+.. . .+. -.+.+.+-=+.++.+...
T Consensus 124 ~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi-- 195 (205)
T PF01596_consen 124 FVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI-- 195 (205)
T ss_dssp EEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS--
T ss_pred EEEEcc------cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe--
Confidence 998873 2335667888899999999999998631 1 111 223335555666665432
Q ss_pred CCCCCceEEEEEec
Q 019879 310 GPLVPEKILVAVKQ 323 (334)
Q Consensus 310 ~~~~~e~~l~~~K~ 323 (334)
.+.+++++|.
T Consensus 196 ----gdGl~l~~K~ 205 (205)
T PF01596_consen 196 ----GDGLTLARKR 205 (205)
T ss_dssp ----TTEEEEEEE-
T ss_pred ----CCeeEEEEEC
Confidence 4678999884
No 171
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.91 E-value=2.4e-05 Score=76.96 Aligned_cols=97 Identities=18% Similarity=0.259 Sum_probs=66.8
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHH----HHHcCc---cchhhhhcccCCCCC-CccceEEechh
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV----IYERGL---IGIYHDWCEAFSTYP-RTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~----a~~Rgl---i~~~~d~~e~l~~yp-~sFDlVha~~v 252 (334)
.+.|||+|||||-+...-++.|+ ..|.++|.| ++.+. +.+.++ +...+.-.|++ -.| ...|+|++-.+
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGA--RKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWM 136 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCc--ceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhh
Confidence 48999999999999888888774 578999988 56554 344454 33444445554 456 99999998743
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIII 281 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii 281 (334)
=+.+....-+..+|.-=+|-|+|||.++=
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 22211112245777788999999998764
No 172
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.85 E-value=0.00012 Score=70.36 Aligned_cols=159 Identities=16% Similarity=0.204 Sum_probs=92.5
Q ss_pred hhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cch
Q 019879 157 EDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGI 229 (334)
Q Consensus 157 ~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~ 229 (334)
-+++.|...|-.-..-. .......+||+|||+|..+..|+..=. -..|+++|.|+.++..|.+. ++ +.+
T Consensus 128 pETEE~V~~Vid~~~~~---~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v 203 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNS---EHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEV 203 (328)
T ss_pred ccHHHHHHHHHHHHhhh---hhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEE
Confidence 35788877775432222 222234899999999999988876311 24589999999988877654 22 333
Q ss_pred hhhhc--ccCCCCC---CccceEEec--hhhcc-----------ccCc--------C--CHHHHHHHHHHhhcCCeEEEE
Q 019879 230 YHDWC--EAFSTYP---RTYDLIHAH--GLFSL-----------YKDK--------C--NIEDILLEMDRILRPEGAIII 281 (334)
Q Consensus 230 ~~d~~--e~l~~yp---~sFDlVha~--~vfs~-----------~~~~--------c--~~~~~L~Em~RVLRPGG~lii 281 (334)
.|... +.+.+++ +.+|+++|| ++++- +.+. + .+..++.=.-|.|+|||.+.+
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 33211 1233443 899999998 33331 0000 0 122566667899999999999
Q ss_pred EeC-----hhhHHH-HHHHHhcccceEEEecCCCCCCCCceEEEEEe
Q 019879 282 RDE-----VDEIIK-VKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK 322 (334)
Q Consensus 282 ~D~-----~~~~~~-i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K 322 (334)
.-. ...+.. +...++.--|.+.++.-- .+.+++++..+
T Consensus 284 e~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df---~~~~Rfv~i~r 327 (328)
T KOG2904|consen 284 ELVERKEHSYLVRIWMISLKDDSNGKAAVVSDF---AGRPRFVIIHR 327 (328)
T ss_pred EecccccCcHHHHHHHHhchhhccchhheeecc---cCCcceEEEEe
Confidence 754 223333 223344444555443211 24677776654
No 173
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.0002 Score=68.03 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=76.2
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc-h---hhhhcccCCCCCCccceEEec
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-I---YHDWCEAFSTYPRTYDLIHAH 250 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~-~---~~d~~e~l~~yp~sFDlVha~ 250 (334)
....+|||+|.|+|.++++|+..-.-...|+..+..++.++.|.+. |+.. + ..|.++. .++..||.|+..
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~--~~~~~vDav~LD 170 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG--IDEEDVDAVFLD 170 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc--ccccccCEEEEc
Confidence 3458999999999999999986311224789999998888887653 3322 1 1233333 234799999765
Q ss_pred hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcccc
Q 019879 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRW 300 (334)
Q Consensus 251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~W 300 (334)
--++-.++.-++.+|+|||.+++.-+. +.++++-..++..+|
T Consensus 171 --------mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 171 --------LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred --------CCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 235779999999999999999887653 344443333333344
No 174
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.80 E-value=3.8e-05 Score=73.05 Aligned_cols=70 Identities=11% Similarity=0.133 Sum_probs=48.4
Q ss_pred CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC---ccchhhhhcccCCCCCC-ccceEEec
Q 019879 177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---LIGIYHDWCEAFSTYPR-TYDLIHAH 250 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg---li~~~~d~~e~l~~yp~-sFDlVha~ 250 (334)
......+|||+|||+|.++..|++++. .|+++|.+++|++.+.++. -+..++.....+ +++. .+|.|+++
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~-~~~~~~~~~vv~N 112 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV-DLSELQPLKVVAN 112 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcC-CHHHcCcceEEEe
Confidence 333457899999999999999999863 6899999999999887652 122222222222 2332 26888888
No 175
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.79 E-value=8.4e-05 Score=70.36 Aligned_cols=103 Identities=11% Similarity=0.161 Sum_probs=68.9
Q ss_pred CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCc-----cc-hh----h---------------hh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL-----IG-IY----H---------------DW 233 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgl-----i~-~~----~---------------d~ 233 (334)
....+||+||..|.+.+.+++. +. .-|.|+|+.+..++.|...-- .. +. + +.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~--r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP--RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc--ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 4578999999999999999875 32 348999999877776654310 00 00 0 00
Q ss_pred c--------------------ccCCCCC-CccceEEechhhc--cccCc-CCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 234 C--------------------EAFSTYP-RTYDLIHAHGLFS--LYKDK-CNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 234 ~--------------------e~l~~yp-~sFDlVha~~vfs--~~~~~-c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
+ .+|.-+. +.||+|.|-++=- |+... ..+..+|..+.|.|.|||+|++--.
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 0 0011133 6899999864322 55422 2488999999999999999999754
No 176
>PLN02823 spermine synthase
Probab=97.76 E-value=0.00036 Score=68.92 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=65.9
Q ss_pred CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-cc---------chhhhhcccCC-CCCCccce
Q 019879 178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LI---------GIYHDWCEAFS-TYPRTYDL 246 (334)
Q Consensus 178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-li---------~~~~d~~e~l~-~yp~sFDl 246 (334)
..+.++||-+|+|.|+.+..+++.. .+..|+.+|+++.+++++++.- +. ..+.+.+-.+. .-+++||+
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence 3457899999999999999888753 2357899999999999887642 11 01111111111 12378999
Q ss_pred EEechhhcccc-CcC-C--HHHHHH-HHHHhhcCCeEEEEE
Q 019879 247 IHAHGLFSLYK-DKC-N--IEDILL-EMDRILRPEGAIIIR 282 (334)
Q Consensus 247 Vha~~vfs~~~-~~c-~--~~~~L~-Em~RVLRPGG~lii~ 282 (334)
|++.. +.... ..+ . -..++. .+.|.|+|||.+++.
T Consensus 180 Ii~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 99872 21100 001 0 135666 899999999999875
No 177
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.73 E-value=0.00037 Score=66.63 Aligned_cols=122 Identities=11% Similarity=0.099 Sum_probs=78.8
Q ss_pred CCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc--Cccchhh-hhccc----CCCCCCccceEE
Q 019879 177 DSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER--GLIGIYH-DWCEA----FSTYPRTYDLIH 248 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R--gli~~~~-d~~e~----l~~yp~sFDlVh 248 (334)
..-.+++|||+|||+|.-+-+..+. + ....++.+|.|+.|++++..- ....... .+-.. +.++ ...|||+
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~DLvi 107 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF-PPDDLVI 107 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC-CCCcEEE
Confidence 3456789999999999865555542 2 346789999999998865431 1111111 01111 1122 3349999
Q ss_pred echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-----hhHHHHHHHHhcccceEE
Q 019879 249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTK 303 (334)
Q Consensus 249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~~~~~l~W~~~ 303 (334)
++++|..+.+ .....++..+.+.+.+ .|+|-++- +.+.++++.+....+.+.
T Consensus 108 ~s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 108 ASYVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVV 164 (274)
T ss_pred EehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence 9999998876 5667888888787766 88887753 356666666655555444
No 178
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.71 E-value=7.3e-05 Score=70.52 Aligned_cols=70 Identities=7% Similarity=0.062 Sum_probs=48.9
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCC-CccceEEechh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAHGL 252 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp-~sFDlVha~~v 252 (334)
...+|||+|||+|.++..|++++ ..|+++|+++.+++.+.++-- ...+.-.+.++..++ ..||.|+++.-
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~Vv~NlP 100 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKVVSNLP 100 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEEEEcCC
Confidence 45799999999999999999875 368999999999998776521 111111122333334 46899999843
No 179
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.65 E-value=0.0001 Score=65.60 Aligned_cols=103 Identities=20% Similarity=0.293 Sum_probs=62.7
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----C--c----cchhhhhcccC--CCCC-Cccc
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----G--L----IGIYHDWCEAF--STYP-RTYD 245 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----g--l----i~~~~d~~e~l--~~yp-~sFD 245 (334)
.+..+||++|||+|-.+..++... ....|+..|.++ .++.+... + . .....+|.+.. ...+ +.||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 456899999999997666666551 234688999885 66643321 1 0 11234676643 1123 7899
Q ss_pred eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879 246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD 286 (334)
Q Consensus 246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~ 286 (334)
+|+++.++.. ....+.++.=+.++|+|+|.+++....+
T Consensus 122 ~IlasDv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYD---EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccch---HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999998864 3457889999999999999988876543
No 180
>PRK00536 speE spermidine synthase; Provisional
Probab=97.61 E-value=0.00039 Score=66.45 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=69.6
Q ss_pred hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccch---hhhhc----ccCCC-CCCccce
Q 019879 175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGI---YHDWC----EAFST-YPRTYDL 246 (334)
Q Consensus 175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~---~~d~~----e~l~~-yp~sFDl 246 (334)
.+...++++||=+|.|-|+.++.+++.+- .|+-+|+.+.+++.+++- +... +.|-. ..+.. ..++||+
T Consensus 67 l~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~-lP~~~~~~~DpRv~l~~~~~~~~~~~fDV 142 (262)
T PRK00536 67 GCTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISF-FPHFHEVKNNKNFTHAKQLLDLDIKKYDL 142 (262)
T ss_pred HhhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHH-CHHHHHhhcCCCEEEeehhhhccCCcCCE
Confidence 34556789999999999999999999862 788889988888877662 1110 00000 00111 1378999
Q ss_pred EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
|+....+. +.+.+.+.|.|+|||.++..-.
T Consensus 143 IIvDs~~~--------~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 143 IICLQEPD--------IHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred EEEcCCCC--------hHHHHHHHHhcCCCcEEEECCC
Confidence 99885432 4677899999999999999653
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.60 E-value=0.00029 Score=66.08 Aligned_cols=46 Identities=9% Similarity=0.169 Sum_probs=38.0
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 224 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R 224 (334)
+...+..+|||+|||+|.++..|++++. .|+++|.++++++.+.++
T Consensus 25 ~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 25 ANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKL 70 (253)
T ss_pred cCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHH
Confidence 3444567999999999999999998763 489999999999887654
No 182
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00058 Score=62.48 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=61.8
Q ss_pred ccccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC--ccch
Q 019879 152 AESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGI 229 (334)
Q Consensus 152 ~e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg--li~~ 229 (334)
-|.|..+...=...+.. ..+ -..-..+.|+|+|||||.|+...+-.|. -.|+++|+.+++++++.+.- +.+.
T Consensus 21 LEQY~Tp~~~Aa~il~~-a~~---~g~l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~l~g~ 94 (198)
T COG2263 21 LEQYRTPAPLAAYILWV-AYL---RGDLEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEELLGD 94 (198)
T ss_pred ceecCCChHHHHHHHHH-HHH---cCCcCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHhhCCc
Confidence 45666666542222221 111 1233457899999999998777666664 35899999999999876532 2222
Q ss_pred hhhhcccCCCCCCccceEEechhhcc
Q 019879 230 YHDWCEAFSTYPRTYDLIHAHGLFSL 255 (334)
Q Consensus 230 ~~d~~e~l~~yp~sFDlVha~~vfs~ 255 (334)
+.-.+.+...+..-||.|+.|-=|..
T Consensus 95 v~f~~~dv~~~~~~~dtvimNPPFG~ 120 (198)
T COG2263 95 VEFVVADVSDFRGKFDTVIMNPPFGS 120 (198)
T ss_pred eEEEEcchhhcCCccceEEECCCCcc
Confidence 22233455567789999998855553
No 183
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.0012 Score=62.37 Aligned_cols=135 Identities=15% Similarity=0.226 Sum_probs=88.6
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhh-hhcccCCC--CCCccceEEechhhcc
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYH-DWCEAFST--YPRTYDLIHAHGLFSL 255 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~-d~~e~l~~--yp~sFDlVha~~vfs~ 255 (334)
+.+.+||+|+-||||..-|+++|+ -.|+++|...+.|.--.+... +..+. .-...+-+ +....|+++|.-.|-
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI- 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI- 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehh-
Confidence 458999999999999999999986 469999998776653322221 00000 00011111 224678999985553
Q ss_pred ccCcCCHHHHHHHHHHhhcCCeEEEEE-------------------eC---hhhHHHHHHHHhcccceEE--EecCCCCC
Q 019879 256 YKDKCNIEDILLEMDRILRPEGAIIIR-------------------DE---VDEIIKVKKIVGGMRWDTK--MVDHEDGP 311 (334)
Q Consensus 256 ~~~~c~~~~~L~Em~RVLRPGG~lii~-------------------D~---~~~~~~i~~~~~~l~W~~~--~~~~~~~~ 311 (334)
.+..+|-.+..+|.|+|.++.. |+ ..++++|.+.+....|.+. ......|+
T Consensus 156 -----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~ 230 (245)
T COG1189 156 -----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGG 230 (245)
T ss_pred -----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCC
Confidence 3568999999999999988774 22 2467889999999999986 22334454
Q ss_pred CCCceEEEEEe
Q 019879 312 LVPEKILVAVK 322 (334)
Q Consensus 312 ~~~e~~l~~~K 322 (334)
.+...+|++-+
T Consensus 231 ~GNiE~l~~~~ 241 (245)
T COG1189 231 KGNIEFLLLLK 241 (245)
T ss_pred CCcEeeeeeee
Confidence 44445555433
No 184
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.42 E-value=0.00023 Score=68.92 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=47.6
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCC-CccceEEec
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAH 250 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp-~sFDlVha~ 250 (334)
...+|||+|||+|.++..|++.+. .|+++|+++++++.+.++ ++...+.-.+.++..++ ..||+|+++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~VvaN 108 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVAN 108 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEEec
Confidence 447899999999999999998753 589999999999877654 21111111122333344 678999987
No 185
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.40 E-value=0.00079 Score=66.15 Aligned_cols=125 Identities=17% Similarity=0.196 Sum_probs=68.4
Q ss_pred CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc-----Cccc---hhh-hhccc-CCC--CC-Ccc
Q 019879 178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----GLIG---IYH-DWCEA-FST--YP-RTY 244 (334)
Q Consensus 178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-----gli~---~~~-d~~e~-l~~--yp-~sF 244 (334)
.+...+|||+|||+|..+..|..+.. ...++++|+++.+++.|.+. ++.. ..+ ..... +.. .+ ..|
T Consensus 112 ~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCce
Confidence 34557899999999998888766421 13699999999988866542 2211 111 00011 111 23 689
Q ss_pred ceEEechhhccccCc--CCHHHHHHHH----------------HHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEe
Q 019879 245 DLIHAHGLFSLYKDK--CNIEDILLEM----------------DRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMV 305 (334)
Q Consensus 245 DlVha~~vfs~~~~~--c~~~~~L~Em----------------~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~ 305 (334)
|+|+|+==|+--... ..-.+-.+.+ .+.+-+||.+-|... ++++-..+.....|-+.+.
T Consensus 191 DlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~--mi~eS~~~~~~~gwftsmv 267 (321)
T PRK11727 191 DATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKR--MIEESKAFAKQVLWFTSLV 267 (321)
T ss_pred EEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehH--hhHHHHHHHhhCcEEEEEe
Confidence 999999333211000 0001111111 233457777655544 3344456677777776654
No 186
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.37 E-value=0.0033 Score=58.54 Aligned_cols=152 Identities=22% Similarity=0.260 Sum_probs=88.8
Q ss_pred hhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccH--HHHHHHhCCCcEEEEEeccCChhh---HH-HHHHcCcc--ch
Q 019879 158 DSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNT---LG-VIYERGLI--GI 229 (334)
Q Consensus 158 d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~~---L~-~a~~Rgli--~~ 229 (334)
..+.|.+++-+-..+...+... ..+++|+|.|.|- .-.++..... +|+-+|....- |. ++.+-||. .+
T Consensus 46 ~~e~~~rHilDSl~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~~---~vtLles~~Kk~~FL~~~~~eL~L~nv~i 121 (215)
T COG0357 46 PEELWQRHILDSLVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPDL---KVTLLESLGKKIAFLREVKKELGLENVEI 121 (215)
T ss_pred HHHHHHHHHHHHhhhhhccccc-CCEEEEeCCCCCCchhhHHHhccCC---cEEEEccCchHHHHHHHHHHHhCCCCeEE
Confidence 3566766664422222222221 4799999999994 3334444443 47888875432 33 23344653 45
Q ss_pred hhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE---eChhhHHHHHHHHhcccceEEEec
Q 019879 230 YHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR---DEVDEIIKVKKIVGGMRWDTKMVD 306 (334)
Q Consensus 230 ~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~---D~~~~~~~i~~~~~~l~W~~~~~~ 306 (334)
++.-+|.+..-+.-||+|.|..+- ++..++.=+...||+||.+++- -..+.+.+++.-.....+.+..+.
T Consensus 122 ~~~RaE~~~~~~~~~D~vtsRAva-------~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 122 VHGRAEEFGQEKKQYDVVTSRAVA-------SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred ehhhHhhcccccccCcEEEeehcc-------chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEE
Confidence 666666654222119999997433 3556666678899999987543 334566777777788888776554
Q ss_pred CCCCCC-CCceEEEE
Q 019879 307 HEDGPL-VPEKILVA 320 (334)
Q Consensus 307 ~~~~~~-~~e~~l~~ 320 (334)
...-|. ..++.|+.
T Consensus 195 ~~~~p~~~~~r~l~i 209 (215)
T COG0357 195 SLTVPELDGERHLVI 209 (215)
T ss_pred EeecCCCCCceEEEE
Confidence 433332 23454443
No 187
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.36 E-value=0.002 Score=63.27 Aligned_cols=126 Identities=14% Similarity=0.150 Sum_probs=76.7
Q ss_pred CccccchhhhhhHHHHHHHHH-HHhhcCCCCCceEeeecccccHHHH----HHHhCCCcEEEEEeccCChhhHHHHHHcC
Q 019879 151 SAESYQEDSNKWKKHVNAYKK-INRLLDSGRYRNIMDMNAGFGGFAA----AIQSSKLWVMNVVPTLADKNTLGVIYERG 225 (334)
Q Consensus 151 ~~e~f~~d~~~W~~~v~~y~~-ll~~l~~~~~r~VLD~GCG~G~faa----~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg 225 (334)
.+|+|...++. .....+.. +...+..+ ..|+|+|||.|.=.. +|...+. ....+|+|+|.++|+.+.++=
T Consensus 50 lpEYYptr~E~--~iL~~~~~~Ia~~i~~~--~~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L 124 (319)
T TIGR03439 50 SPEYYLTNDEI--EILKKHSSDIAASIPSG--SMLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAEL 124 (319)
T ss_pred CCccCChHHHH--HHHHHHHHHHHHhcCCC--CEEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhh
Confidence 46777777663 55555533 44455543 479999999998444 4433221 246899999999998765531
Q ss_pred c------------cchhhhhcccCCC--CCCccceEE-echhhccccCcCCHHHHHHHHHH-hhcCCeEEEEE
Q 019879 226 L------------IGIYHDWCEAFST--YPRTYDLIH-AHGLFSLYKDKCNIEDILLEMDR-ILRPEGAIIIR 282 (334)
Q Consensus 226 l------------i~~~~d~~e~l~~--yp~sFDlVh-a~~vfs~~~~~c~~~~~L~Em~R-VLRPGG~lii~ 282 (334)
. .+.+.+-.+-++. .+....++. -.+.|..+. +.....+|.++.+ .|+|||.|+|.
T Consensus 125 ~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~-~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 125 PLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFS-RPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred hhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCC-HHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 1 1122111011111 123345554 335666654 3456789999999 99999999995
No 188
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.35 E-value=0.00048 Score=65.32 Aligned_cols=117 Identities=15% Similarity=0.223 Sum_probs=71.7
Q ss_pred CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---ch-hhhhccc-CC-CCCCccce
Q 019879 177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GI-YHDWCEA-FS-TYPRTYDL 246 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~-~~d~~e~-l~-~yp~sFDl 246 (334)
+-....+||+.|.|+|.++.+|+..-.-...|...|..++..+.|.+. |+. .. ..|.|++ |. ..++.||.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 334458999999999999999986311113689999998888776543 442 22 3466643 32 12378999
Q ss_pred EEechhhccccCcCCHHHHHHHHHHhh-cCCeEEEEEeC-hhhHHHHHHHHhcccce
Q 019879 247 IHAHGLFSLYKDKCNIEDILLEMDRIL-RPEGAIIIRDE-VDEIIKVKKIVGGMRWD 301 (334)
Q Consensus 247 Vha~~vfs~~~~~c~~~~~L~Em~RVL-RPGG~lii~D~-~~~~~~i~~~~~~l~W~ 301 (334)
|+-. ++ ++-.++.-+.++| ||||.+++--+ .+.+.+.-..++...|.
T Consensus 117 vfLD-----lp---~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 117 VFLD-----LP---DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFT 165 (247)
T ss_dssp EEEE-----SS---SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEE
T ss_pred EEEe-----CC---CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCe
Confidence 9765 22 3456888899999 99999888755 34444433334444553
No 189
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=6.8e-05 Score=66.71 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=38.1
Q ss_pred CCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 238 STYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 238 ~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
++|. +|.|+|.|.+|++|+.- ..-..+++|.+|+|||||+|-|+
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEE
Confidence 4565 99999999999999853 34568999999999999999997
No 190
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.32 E-value=0.00038 Score=65.93 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=64.2
Q ss_pred CCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHH----cCcc---chhhhhc-ccCCC------CC
Q 019879 177 DSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYE----RGLI---GIYHDWC-EAFST------YP 241 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~----Rgli---~~~~d~~-e~l~~------yp 241 (334)
...+.++||.+|+++|.-+.+|+.. +. ...|+.+|.+++...+|.+ -|+. ....+.+ +-++. +.
T Consensus 76 ~~~~ak~iLEiGT~~GySal~la~al~~-~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 76 KLINAKNTMEIGVYTGYSLLATALALPE-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred HHhCCCEEEEEeChhhHHHHHHHhhCCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccC
Confidence 3345689999999999877777652 11 1358999998877776533 2431 1111111 11111 24
Q ss_pred CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
++||+|+... ++......+..+.+.|||||.+++.+
T Consensus 155 ~~fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 155 GTFDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred CcccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 6999998862 22345577778889999999988753
No 191
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.30 E-value=0.002 Score=63.83 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=71.1
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccch--hhh-hcccCCCCC-CccceEEechh
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGI--YHD-WCEAFSTYP-RTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~--~~d-~~e~l~~yp-~sFDlVha~~v 252 (334)
+.+|||==||||+|+...--.| .+++|.|++..|+.-|... |+... +.. .+.. .+++ ++||.|.+.-=
T Consensus 198 G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~-lpl~~~~vdaIatDPP 273 (347)
T COG1041 198 GELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN-LPLRDNSVDAIATDPP 273 (347)
T ss_pred CCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc-CCCCCCccceEEecCC
Confidence 4689999999999865554334 6899999999998865432 11111 111 1223 3587 77999998621
Q ss_pred hccc--cCcC----CHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHH
Q 019879 253 FSLY--KDKC----NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKI 294 (334)
Q Consensus 253 fs~~--~~~c----~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~ 294 (334)
..-- .... -..++|.++.++|++||++++.-+.+.....++.
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~~ 321 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEEL 321 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhhc
Confidence 1100 0111 1468999999999999999998775544444443
No 192
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.29 E-value=0.001 Score=68.42 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=67.0
Q ss_pred CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc--hhhhhcccCC-CCCCccceEE-
Q 019879 177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYHDWCEAFS-TYPRTYDLIH- 248 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~--~~~d~~e~l~-~yp~sFDlVh- 248 (334)
......+|||++||.|+=+.+|++.---...|++.|+++..+....++ |+.. +.+.....+. .++.+||.|.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 444567999999999997777665310012589999998877655433 4421 1111111222 3568899998
Q ss_pred ---ec--hhhccccC----c--CCH-------HHHHHHHHHhhcCCeEEEEEeC
Q 019879 249 ---AH--GLFSLYKD----K--CNI-------EDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 249 ---a~--~vfs~~~~----~--c~~-------~~~L~Em~RVLRPGG~lii~D~ 284 (334)
|| .+|..-++ + .++ ..+|....+.|||||.|+-++-
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 55 23332110 0 011 3788999999999999999874
No 193
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.28 E-value=0.00068 Score=68.31 Aligned_cols=126 Identities=18% Similarity=0.231 Sum_probs=80.5
Q ss_pred chhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchhh
Q 019879 156 QEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYH 231 (334)
Q Consensus 156 ~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~ 231 (334)
..++-.|-.+-..-..+-..++ .++|||+=|-||+|+.+.+..|+ -.|+.+|.|...|+.+.+. |+...-|
T Consensus 196 g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~ 270 (393)
T COG1092 196 GLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRH 270 (393)
T ss_pred cccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccce
Confidence 3445555444333222222333 48999999999999999998886 2589999999899987764 4332223
Q ss_pred hhccc--CC---CCC---CccceEEec-hhhccccC-----cCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879 232 DWCEA--FS---TYP---RTYDLIHAH-GLFSLYKD-----KCNIEDILLEMDRILRPEGAIIIRDEVD 286 (334)
Q Consensus 232 d~~e~--l~---~yp---~sFDlVha~-~vfs~~~~-----~c~~~~~L~Em~RVLRPGG~lii~D~~~ 286 (334)
.|... |. -+. .+||+|+.. -.|.--+. ..+..+++....++|+|||.++++....
T Consensus 271 ~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 271 RFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred eeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 32221 11 122 499999875 12221110 1134588999999999999999998653
No 194
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0094 Score=54.56 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=75.9
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHH----HHHcC-c-cchhhhhcccCCCCCCccceEEe
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV----IYERG-L-IGIYHDWCEAFSTYPRTYDLIHA 249 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~----a~~Rg-l-i~~~~d~~e~l~~yp~sFDlVha 249 (334)
|+...+..+|++|||+|-...+|++.-.-..-...+|+++..++. |...+ . ..+..|....+. +++.|+++-
T Consensus 39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~--~~~VDvLvf 116 (209)
T KOG3191|consen 39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR--NESVDVLVF 116 (209)
T ss_pred HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc--cCCccEEEE
Confidence 444456789999999999998888742222346889999877664 33222 2 222222222221 156665544
Q ss_pred c--hhhc-------------cc--cC-cCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEEe
Q 019879 250 H--GLFS-------------LY--KD-KCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMV 305 (334)
Q Consensus 250 ~--~vfs-------------~~--~~-~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~~ 305 (334)
+ +|.. .. .+ +.-+.+++..+.-+|-|-|.+++---.. ..++|-+++++-.|.+++.
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA 191 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEE
Confidence 3 1111 00 11 1124578888889999999999876544 3345555677777776643
No 195
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.25 E-value=0.00076 Score=67.62 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=62.8
Q ss_pred ceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCCCCCccceEEechhhc
Q 019879 182 RNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFSTYPRTYDLIHAHGLFS 254 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~yp~sFDlVha~~vfs 254 (334)
.+|||++||+|.++..++.. ++ ..|+++|.+++.++.+.+. ++. ..+...++.+....+.||+|..+- |
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 47999999999999998653 42 4689999999988876542 321 122222222211146799998862 2
Q ss_pred cccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 255 LYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
-....++....+.++|||+++++
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 12356777767889999999998
No 196
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.18 E-value=0.0019 Score=58.27 Aligned_cols=111 Identities=12% Similarity=0.060 Sum_probs=77.1
Q ss_pred HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-----cchhhhhcccCCCCC-Cccc
Q 019879 172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAFSTYP-RTYD 245 (334)
Q Consensus 172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-----i~~~~d~~e~l~~yp-~sFD 245 (334)
+.+.|.+.+...||.+|.|||-|..+++.+++.-.+++.++.+++......++-- .|...+.-..+.-++ .-||
T Consensus 40 M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D 119 (194)
T COG3963 40 MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFD 119 (194)
T ss_pred HHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeee
Confidence 3345677778899999999999999999999888899999999887776555421 111111111122345 7899
Q ss_pred eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
.|+|..=|-.++- ..-..+|.+..--|++||-++--.
T Consensus 120 ~viS~lPll~~P~-~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 120 SVISGLPLLNFPM-HRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred eEEeccccccCcH-HHHHHHHHHHHHhcCCCCeEEEEE
Confidence 9999743333321 112478889999999999887654
No 197
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.18 E-value=0.0013 Score=59.49 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=61.2
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhc-ccCCCC--C-CccceEEe
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWC-EAFSTY--P-RTYDLIHA 249 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~-e~l~~y--p-~sFDlVha 249 (334)
..+|||++||+|.++..++.++.. .|+.+|.++.+++.+.+. ++. ..+...+ +.+..+ . ..||+|+.
T Consensus 50 g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 368999999999999999998863 589999998888766442 221 1111111 111112 2 24888877
Q ss_pred chhhccccCcCCHHHHHHHH--HHhhcCCeEEEEEeCh
Q 019879 250 HGLFSLYKDKCNIEDILLEM--DRILRPEGAIIIRDEV 285 (334)
Q Consensus 250 ~~vfs~~~~~c~~~~~L~Em--~RVLRPGG~lii~D~~ 285 (334)
.==|.. ...+.++.-+ ..+|+++|.+++....
T Consensus 128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 633321 1233333333 4579999988887544
No 198
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.13 E-value=0.0013 Score=61.20 Aligned_cols=112 Identities=14% Similarity=0.291 Sum_probs=75.9
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhccc-CCCCC-CccceEEechhhccccCc
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA-FSTYP-RTYDLIHAHGLFSLYKDK 259 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~-l~~yp-~sFDlVha~~vfs~~~~~ 259 (334)
-++||+||=....+.. ..+ + .+|+++|..++. -++ ...|..+. +|.-+ +.||+|.++.|+..+++.
T Consensus 53 lrlLEVGals~~N~~s--~~~-~-fdvt~IDLns~~------~~I--~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSG-W-FDVTRIDLNSQH------PGI--LQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred ceEEeecccCCCCccc--ccC-c-eeeEEeecCCCC------CCc--eeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 5899999875443222 222 2 579999998522 121 11222221 33334 899999999999998865
Q ss_pred CCHHHHHHHHHHhhcCCeE-----EEEEeC------hh--hHHHHHHHHhcccceEEEe
Q 019879 260 CNIEDILLEMDRILRPEGA-----IIIRDE------VD--EIIKVKKIVGGMRWDTKMV 305 (334)
Q Consensus 260 c~~~~~L~Em~RVLRPGG~-----lii~D~------~~--~~~~i~~~~~~l~W~~~~~ 305 (334)
..--..++-+++.|||+|. |+|--+ .. ..+++..++.+|......+
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 5556899999999999999 777543 23 2357888899999977654
No 199
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.13 E-value=0.002 Score=63.76 Aligned_cols=107 Identities=12% Similarity=0.195 Sum_probs=66.8
Q ss_pred eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhccc-CCC------C---C-----
Q 019879 183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEA-FST------Y---P----- 241 (334)
Q Consensus 183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~-l~~------y---p----- 241 (334)
+|||++||+|.|+..|.+.. ..|+++|.++++++.+.+. |+ +..+....+. ++. + .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 59999999999999888764 2699999999999887654 22 1111111111 110 1 0
Q ss_pred -CccceEEechhhccccCcCCH-HHHHHHHHHhhcCCeEEEEEeChhhH-HHHHHHHhcccceEE
Q 019879 242 -RTYDLIHAHGLFSLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVDEI-IKVKKIVGGMRWDTK 303 (334)
Q Consensus 242 -~sFDlVha~~vfs~~~~~c~~-~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~~~~~l~W~~~ 303 (334)
..||+|+.. +.+..+ +.++.- +++|++.++++=.+..+ .-++.+... +++.
T Consensus 277 ~~~~d~v~lD------PPR~G~~~~~l~~---l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~ 330 (353)
T TIGR02143 277 SYNCSTIFVD------PPRAGLDPDTCKL---VQAYERILYISCNPETLKANLEQLSET--HRVE 330 (353)
T ss_pred cCCCCEEEEC------CCCCCCcHHHHHH---HHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEE
Confidence 137999876 444443 344443 45599999999766643 345555433 6654
No 200
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.12 E-value=0.00086 Score=60.15 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=67.7
Q ss_pred CCCCCceEeeecccccHHHH--HHHhCCCc------EEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCC
Q 019879 177 DSGRYRNIMDMNAGFGGFAA--AIQSSKLW------VMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYP 241 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~faa--~L~~~~v~------v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp 241 (334)
.......|||-=||+|++.. ++....+. ...+.+.|+++.++..+.+. |+. ......+..++..+
T Consensus 25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~ 104 (179)
T PF01170_consen 25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPD 104 (179)
T ss_dssp T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTT
T ss_pred CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccccc
Confidence 34445789999999999873 33333321 12378999999998876543 321 12221223344334
Q ss_pred CccceEEechhhccc-cCc----CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEE
Q 019879 242 RTYDLIHAHGLFSLY-KDK----CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 304 (334)
Q Consensus 242 ~sFDlVha~~vfs~~-~~~----c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~ 304 (334)
++||+|+++-=+..- ... .-...++.|+.|+|+|...+++...... ++.+....|....
T Consensus 105 ~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~----~~~~~~~~~~~~~ 168 (179)
T PF01170_consen 105 GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL----EKALGLKGWRKRK 168 (179)
T ss_dssp SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH----HHHHTSTTSEEEE
T ss_pred CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHhcchhhceEE
Confidence 899999998433311 111 1124789999999999555555554443 3334444665543
No 201
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.09 E-value=0.00061 Score=66.24 Aligned_cols=52 Identities=17% Similarity=0.054 Sum_probs=39.7
Q ss_pred HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879 173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 224 (334)
Q Consensus 173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R 224 (334)
+..+.......++|++||+|+++.++++..-....|+++|.++.++..+.++
T Consensus 12 l~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 12 VDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred HHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 3334333446899999999999999998631124699999999999998765
No 202
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.04 E-value=0.00098 Score=61.31 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=55.6
Q ss_pred CceEeeecccccHHHHHHHh--CCCcEEEEEeccCChhhHHHHHH----cCc---cchhhhhcccCCCCCCccceEEech
Q 019879 181 YRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYE----RGL---IGIYHDWCEAFSTYPRTYDLIHAHG 251 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~--~~v~v~nVv~vD~s~~~L~~a~~----Rgl---i~~~~d~~e~l~~yp~sFDlVha~~ 251 (334)
..+|+||-||.|.|+..++. ++ ..|+++|..+...+...+ .++ +..++..|..++. ...||-|+++.
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~---~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKA---KRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-S---SEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred ceEEEEccCCccHHHHHHhhhcCc---cEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 47999999999999999887 43 358999999887664322 233 2233444444443 68999998872
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCCeEEE
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPEGAII 280 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPGG~li 280 (334)
+. ....+|.+..+++|+||.+.
T Consensus 178 -----p~--~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 -----PE--SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -----TS--SGGGGHHHHHHHEEEEEEEE
T ss_pred -----hH--HHHHHHHHHHHHhcCCcEEE
Confidence 21 12358888999999999875
No 203
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.02 E-value=0.0076 Score=62.42 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=33.5
Q ss_pred CceEeeecccccHHHHHHHhCC-------CcEEEEEeccCChhhHHHHHH
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSK-------LWVMNVVPTLADKNTLGVIYE 223 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~-------v~v~nVv~vD~s~~~L~~a~~ 223 (334)
..+|||.+||+|+|..+++++. ....++.++|+++..+..+..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~ 81 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK 81 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence 4689999999999998886531 123689999999888876654
No 204
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.00 E-value=0.00041 Score=64.59 Aligned_cols=92 Identities=20% Similarity=0.338 Sum_probs=67.7
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCcc-chhhhhcccCCCCCCccceEEechhhccccC
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-GIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 258 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli-~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~ 258 (334)
...++||+|+|-|.....++.. +..|.+.+.|..|......++.. -...+|.+. +=.||+|.|-+++ +
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~ynVl~~~ew~~t----~~k~dli~clNlL----D 180 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQT----DVKLDLILCLNLL----D 180 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcCCceeeehhhhhc----CceeehHHHHHHH----H
Confidence 4579999999999988877653 23477888888887777766642 122334332 1359999997766 4
Q ss_pred cC-CHHHHHHHHHHhhcC-CeEEEEE
Q 019879 259 KC-NIEDILLEMDRILRP-EGAIIIR 282 (334)
Q Consensus 259 ~c-~~~~~L~Em~RVLRP-GG~lii~ 282 (334)
+| ++-++|.+++-||+| .|.+|++
T Consensus 181 Rc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 181 RCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred hhcChHHHHHHHHHHhccCCCcEEEE
Confidence 67 578999999999999 9998886
No 205
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.00 E-value=0.0018 Score=64.04 Aligned_cols=100 Identities=19% Similarity=0.198 Sum_probs=68.0
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCc
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 259 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~ 259 (334)
.....+|+|.|.|..+..+..+--+ +..+-+|.+ ..++.+..-+ .++-|--+.-|-.-| .-|+|+.-.++||+.|
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~-ik~infdlp-~v~~~a~~~~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwtD- 251 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPH-IKGINFDLP-FVLAAAPYLA-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWTD- 251 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCC-CceeecCHH-HHHhhhhhhc-CCcceecccccccCC-CcCeEEEEeecccCCh-
Confidence 3588999999999999998874222 344444443 2333333222 333332233332223 3469999999999874
Q ss_pred CCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 260 CNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 260 c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
.+..++|+-+.--|+|||.+++-|.
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEec
Confidence 6789999999999999999999875
No 206
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0016 Score=60.65 Aligned_cols=94 Identities=19% Similarity=0.180 Sum_probs=59.4
Q ss_pred CceEeeecccccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHc----------------CccchhhhhcccCCCCC--
Q 019879 181 YRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYER----------------GLIGIYHDWCEAFSTYP-- 241 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~R----------------gli~~~~d~~e~l~~yp-- 241 (334)
..+.||+|.|+|.+.+.+.. -+....|+++++..++.++.+.+. |-..+....|- --|+
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr--~g~~e~ 160 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGR--KGYAEQ 160 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcc--ccCCcc
Confidence 36899999999987665542 122334669999887776644332 21111111111 1233
Q ss_pred CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
+.||.||+... ...+.+++--.|+|||.+++--..
T Consensus 161 a~YDaIhvGAa---------a~~~pq~l~dqL~~gGrllip~~~ 195 (237)
T KOG1661|consen 161 APYDAIHVGAA---------ASELPQELLDQLKPGGRLLIPVGQ 195 (237)
T ss_pred CCcceEEEccC---------ccccHHHHHHhhccCCeEEEeecc
Confidence 88999999732 235667888899999999886543
No 207
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.99 E-value=0.009 Score=57.26 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=60.9
Q ss_pred cCCCCCceEeeecccccHHHHHHHhC------CCcEEEEEeccCChhhHHHHHHc----Cccch-h-hhhcccCC--CC-
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSS------KLWVMNVVPTLADKNTLGVIYER----GLIGI-Y-HDWCEAFS--TY- 240 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~------~v~v~nVv~vD~s~~~L~~a~~R----gli~~-~-~d~~e~l~--~y- 240 (334)
+......+|+|-.||+|+|..+..+. .....++.|+|+++.+..++.-+ |.... . ......|. .+
T Consensus 42 ~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 42 LNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI 121 (311)
T ss_dssp HTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT
T ss_pred hhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc
Confidence 44455678999999999998777651 01125899999998887765432 22111 0 00111121 12
Q ss_pred -CCccceEEechhhccc-------cC----------cCCH-HHHHHHHHHhhcCCeEEEEEeCh
Q 019879 241 -PRTYDLIHAHGLFSLY-------KD----------KCNI-EDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 241 -p~sFDlVha~~vfs~~-------~~----------~c~~-~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
...||+|+++-=|... .. .... ..++.-+.+.|++||.+.+--+.
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 2689999998433321 00 0011 14777899999999987665443
No 208
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.98 E-value=0.011 Score=55.85 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=76.8
Q ss_pred CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----------cchhhhhccc-CCCCCC-ccc
Q 019879 178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----------IGIYHDWCEA-FSTYPR-TYD 245 (334)
Q Consensus 178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----------i~~~~d~~e~-l~~yp~-sFD 245 (334)
..++++||=+|-|.|+.+..+++.+ .+..|+.+|+++..++.+++--. ...+++.+-. +...++ +||
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence 3467999999999999999998865 23578888999888887755210 0111111111 122445 999
Q ss_pred eEEechhhccccC-cCCHHHHHHHHHHhhcCCeEEEEEeC-----hhhHHHHHHHHhcccceEEEe
Q 019879 246 LIHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTKMV 305 (334)
Q Consensus 246 lVha~~vfs~~~~-~c~~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~~~~~l~W~~~~~ 305 (334)
+|+....-..... ..--..+++.+.|.|+|||.+++.-. ...+..+.+.+++.--.+..+
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~ 218 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPY 218 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEE
Confidence 9988632111000 00125789999999999999998742 234455556666655555543
No 209
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.92 E-value=0.0034 Score=62.36 Aligned_cols=108 Identities=14% Similarity=0.257 Sum_probs=67.2
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccC-CCC--------------
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAF-STY-------------- 240 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l-~~y-------------- 240 (334)
.+|||++||+|.|+.+|.+.. ..|+++|.++.+++.+.+. |+ +..+....+.+ ..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 469999999999999888753 3699999999999877654 32 11111111111 000
Q ss_pred -CCccceEEechhhccccCcCCH-HHHHHHHHHhhcCCeEEEEEeChhhHH-HHHHHHhcccceEE
Q 019879 241 -PRTYDLIHAHGLFSLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVDEII-KVKKIVGGMRWDTK 303 (334)
Q Consensus 241 -p~sFDlVha~~vfs~~~~~c~~-~~~L~Em~RVLRPGG~lii~D~~~~~~-~i~~~~~~l~W~~~ 303 (334)
...||+|+.. +.+..+ +.++.-+ ++|++.++++-.+..+. -++.+.. .++++
T Consensus 285 ~~~~~D~v~lD------PPR~G~~~~~l~~l---~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~ 339 (362)
T PRK05031 285 KSYNFSTIFVD------PPRAGLDDETLKLV---QAYERILYISCNPETLCENLETLSQ--THKVE 339 (362)
T ss_pred cCCCCCEEEEC------CCCCCCcHHHHHHH---HccCCEEEEEeCHHHHHHHHHHHcC--CcEEE
Confidence 1258999886 444332 3444443 45899999997766443 3555543 46654
No 210
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0041 Score=60.13 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=70.9
Q ss_pred hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cc---------hhhhhc-ccCCCCCCc
Q 019879 175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG---------IYHDWC-EAFSTYPRT 243 (334)
Q Consensus 175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~---------~~~d~~-e~l~~yp~s 243 (334)
.+..+++++||=+|-|.|+.++.+++..- +..++-+|+.++.++.+++.-- .. ...+.. +-+..++++
T Consensus 71 ~~ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~ 149 (282)
T COG0421 71 LLAHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEK 149 (282)
T ss_pred hhhCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCc
Confidence 34456668999999999999999998753 4678888898888888776421 10 000000 001224469
Q ss_pred cceEEechhhccccCcC--CHHHHHHHHHHhhcCCeEEEEEe
Q 019879 244 YDLIHAHGLFSLYKDKC--NIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 244 FDlVha~~vfs~~~~~c--~~~~~L~Em~RVLRPGG~lii~D 283 (334)
||+|+....=. .-.-. .-..+++.++|.|+|+|.++...
T Consensus 150 fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 150 FDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 99998862211 00000 01589999999999999999983
No 211
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.79 E-value=0.021 Score=54.93 Aligned_cols=120 Identities=16% Similarity=0.240 Sum_probs=80.7
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHH---HHHHc----Cc---cchhhhhcc--------------
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYER----GL---IGIYHDWCE-------------- 235 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~---~a~~R----gl---i~~~~d~~e-------------- 235 (334)
+.-+||==|||.|+++-.++.+|. .+.+.+.|--|+- ++... +- -...|.++.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 346899999999999999999985 5899999977754 33222 10 011122111
Q ss_pred -------------------cCC-CCC-----CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE--------
Q 019879 236 -------------------AFS-TYP-----RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR-------- 282 (334)
Q Consensus 236 -------------------~l~-~yp-----~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~-------- 282 (334)
+|. .|+ ++||.|++.+++- .-.++-..|..|.++|||||+.|=-
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID---TA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~ 209 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID---TAENIIEYIETIEHLLKPGGYWINFGPLLYHFE 209 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee---chHHHHHHHHHHHHHhccCCEEEecCCccccCC
Confidence 010 133 4899988774432 2235889999999999999965542
Q ss_pred eC-------hh-hHHHHHHHHhcccceEEEe
Q 019879 283 DE-------VD-EIIKVKKIVGGMRWDTKMV 305 (334)
Q Consensus 283 D~-------~~-~~~~i~~~~~~l~W~~~~~ 305 (334)
+. .+ .+++|..++..+.|+....
T Consensus 210 ~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 210 PMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred CCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 22 22 4688999999999998653
No 212
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.72 E-value=0.0042 Score=61.70 Aligned_cols=92 Identities=12% Similarity=0.066 Sum_probs=61.6
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCc
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 259 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~ 259 (334)
+..++||+||++|||+-.|+++|. .|+++|.. .|-....+-+.+..+....-.+.|-++.+|+|+|..+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g-~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv------- 279 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNG-PMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV------- 279 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC---EEEEEech-hcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc-------
Confidence 457999999999999999999984 68999966 4544444444332221111111121478999999843
Q ss_pred CCHHHHHHHHHHhhcCC--eEEEEE
Q 019879 260 CNIEDILLEMDRILRPE--GAIIIR 282 (334)
Q Consensus 260 c~~~~~L~Em~RVLRPG--G~lii~ 282 (334)
+.+.+++.=|.+-|..| ..+|+.
T Consensus 280 e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 45677888888888766 356665
No 213
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.63 E-value=0.0022 Score=61.14 Aligned_cols=103 Identities=15% Similarity=0.295 Sum_probs=61.0
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH--------------------cC-------------
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--------------------RG------------- 225 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~--------------------Rg------------- 225 (334)
.++.++||+|||+--+ ..|.... +..+++-.|.++..++.... .|
T Consensus 55 ~~g~~llDiGsGPtiy-~~lsa~~-~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIY-QLLSACE-WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--G-GGTTGGG-TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHH-hhhhHHH-hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3458999999999544 2333222 45789999998776542211 01
Q ss_pred -ccc-hhh-hhccc--CCC---CCCccceEEechhhccc-cCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 226 -LIG-IYH-DWCEA--FST---YPRTYDLIHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 226 -li~-~~~-d~~e~--l~~---yp~sFDlVha~~vfs~~-~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
.+. ++. |..+. +.+ .|..||+|++...+... ++......+++-+-+.|||||.|++..
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 010 000 11111 122 23469999999888754 233446699999999999999999974
No 214
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.59 E-value=0.026 Score=53.01 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=64.3
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChh----hHHHHHHcCc-cchhhhhccc--CCCCCCccceEEechh
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKN----TLGVIYERGL-IGIYHDWCEA--FSTYPRTYDLIHAHGL 252 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~----~L~~a~~Rgl-i~~~~d~~e~--l~~yp~sFDlVha~~v 252 (334)
...+||-+|+.+|+...++.+--....-|.+++.|+. .+.+|.+|-. +.++.|-..+ ...+-...|+|++.
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D-- 150 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD-- 150 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE--
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec--
Confidence 3579999999999988888772000024899999984 5668888864 4444331111 01122688999886
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
..+..+.+-++.-+..-||+||.+++.-
T Consensus 151 ---VaQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 151 ---VAQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp ----SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 2334556777888889999999999874
No 215
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.43 E-value=0.0062 Score=58.98 Aligned_cols=103 Identities=19% Similarity=0.214 Sum_probs=63.2
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc-chhhhhcccC----CCC--CCccceEEe
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAF----STY--PRTYDLIHA 249 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli-~~~~d~~e~l----~~y--p~sFDlVha 249 (334)
.++|||+=|-||+|+.+.+..|+ ..|+.+|.|..+|+.+.+. |+. ..+...+++. .-. .+.||+|++
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 47999999999999998877774 3689999999999877654 332 1111111111 001 268999988
Q ss_pred c-hhhcccc--CcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 250 H-GLFSLYK--DKCNIEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 250 ~-~vfs~~~--~~c~~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
. -.|..-. -..+..+++....++|+|||.|+++...
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 6 1222100 0113457888899999999999987654
No 216
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.36 E-value=0.0073 Score=60.54 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=65.3
Q ss_pred ceEeeecccccHHHHHHHhC--CCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCC-CCccceEEechh
Q 019879 182 RNIMDMNAGFGGFAAAIQSS--KLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTY-PRTYDLIHAHGL 252 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~--~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~y-p~sFDlVha~~v 252 (334)
-+|||+-||+|.++..++.+ ++ -.|+.+|++++.++.+.+. ++ +.+++..+..+... ...||+|...-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 48999999999999998876 43 4699999999988876543 22 11222222222222 26799998864
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
|. ....++...-+.+++||+|.++
T Consensus 123 fG------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 FG------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CC------CcHHHHHHHHHhcccCCEEEEE
Confidence 32 2357888999999999999998
No 217
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.32 E-value=0.011 Score=58.78 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=69.2
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc--C--c---cchhhhhcccCCCCCCccceEEech
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--G--L---IGIYHDWCEAFSTYPRTYDLIHAHG 251 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R--g--l---i~~~~d~~e~l~~yp~sFDlVha~~ 251 (334)
-..+.|||+|||.|-+...-++.|+ -.|.+++.| +|.+.|..- + + |.+...-.|+. .+|...|+|++--
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi-eLPEk~DviISEP 251 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI-ELPEKVDVIISEP 251 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCc--ceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc-cCchhccEEEecc
Confidence 3568999999999987766666664 468999988 787754331 1 1 11222222343 4678999999863
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCCeEEEEE--e-----ChhhHHHHHHHHhcccce
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR--D-----EVDEIIKVKKIVGGMRWD 301 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~--D-----~~~~~~~i~~~~~~l~W~ 301 (334)
+=..+-+ +.+...-.-..|-|+|.|..+=+ | ..+..-.++.+-+.+-|-
T Consensus 252 MG~mL~N-ERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWy 307 (517)
T KOG1500|consen 252 MGYMLVN-ERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWY 307 (517)
T ss_pred chhhhhh-HHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhh
Confidence 2222222 22333333456999999986533 2 223223345555555563
No 218
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.019 Score=57.40 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=62.4
Q ss_pred CCCCCceEeeecccccHHHHHHHhCCCc--EEEEEeccCChhhHHHHHH--cCccchhhhh-----cccCCCCC--Cccc
Q 019879 177 DSGRYRNIMDMNAGFGGFAAAIQSSKLW--VMNVVPTLADKNTLGVIYE--RGLIGIYHDW-----CEAFSTYP--RTYD 245 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~--v~nVv~vD~s~~~L~~a~~--Rgli~~~~d~-----~e~l~~yp--~sFD 245 (334)
..-....|||+|.|.|.-+-++-+ +| .-+++-+..|+..-.++.. +.......+| .++.+++| ..|+
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~--i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~yt 187 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALND--IWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYT 187 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcc--cCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceee
Confidence 334567899999999976655543 22 1234444555433223222 1111111122 22334455 7888
Q ss_pred eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
+|+..+-+-+-...-.+...+..+..+|+|||.|+|.+.
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 888775554433333466788899999999999999874
No 219
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.18 E-value=0.018 Score=54.26 Aligned_cols=101 Identities=18% Similarity=0.136 Sum_probs=61.0
Q ss_pred CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHH----HHcCc---cchhhh-hccc----CCCCC-Cc
Q 019879 177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVI----YERGL---IGIYHD-WCEA----FSTYP-RT 243 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a----~~Rgl---i~~~~d-~~e~----l~~yp-~s 243 (334)
+.-+.+++||+|.=||.-+.+++..=-...-|+.+|+.++..+.. ...|. +...+. -++. +.-++ ++
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCc
Confidence 334468999999877764433332100113589999987765543 22333 212221 1122 23355 99
Q ss_pred cceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 244 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 244 FDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
||+++.. |- ...-.....+.-|.||+||.+++..
T Consensus 150 fDfaFvD----ad--K~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 150 FDFAFVD----AD--KDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred eeEEEEc----cc--hHHHHHHHHHHHhhcccccEEEEec
Confidence 9999875 22 2234488889999999999999864
No 220
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.016 Score=53.75 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=69.1
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHH---HHcCc---cchhhhhcccCCCCC-CccceEEechhh
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVI---YERGL---IGIYHDWCEAFSTYP-RTYDLIHAHGLF 253 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a---~~Rgl---i~~~~d~~e~l~~yp-~sFDlVha~~vf 253 (334)
...|+|+||-.|+++..++++-.-...|+++|+. +|-.+. .=+|- ..+.....+. ++ ..+|+|.|...=
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~-p~~~~~~V~~iq~d~~~~~~~~~l~~~---l~~~~~DvV~sD~ap 121 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDIL-PMKPIPGVIFLQGDITDEDTLEKLLEA---LGGAPVDVVLSDMAP 121 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECc-ccccCCCceEEeeeccCccHHHHHHHH---cCCCCcceEEecCCC
Confidence 4789999999999988777642111226666664 231110 00010 0011111121 33 347999865322
Q ss_pred --------ccccCcCCHHHHHHHHH-HhhcCCeEEEEEeC-----hhhHHHHHHHHhcccceEEEecCCCCCCCCceEEE
Q 019879 254 --------SLYKDKCNIEDILLEMD-RILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILV 319 (334)
Q Consensus 254 --------s~~~~~c~~~~~L~Em~-RVLRPGG~lii~D~-----~~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~ 319 (334)
.|+.. -.+..+..||. ++|+|||.+++.+. .+.+..++..+..++=.. +..-. +...|-+++
T Consensus 122 ~~~g~~~~Dh~r~-~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~K--P~aSR-~~S~E~y~v 197 (205)
T COG0293 122 NTSGNRSVDHARS-MYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFK--PKASR-KRSREIYLV 197 (205)
T ss_pred CcCCCccccHHHH-HHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEec--Ccccc-CCCceEEEE
Confidence 22211 12334555554 59999999999763 345555665555543221 11110 113588888
Q ss_pred EEe
Q 019879 320 AVK 322 (334)
Q Consensus 320 ~~K 322 (334)
+.+
T Consensus 198 ~~~ 200 (205)
T COG0293 198 AKG 200 (205)
T ss_pred Eec
Confidence 865
No 221
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.03 E-value=0.039 Score=56.85 Aligned_cols=99 Identities=12% Similarity=0.246 Sum_probs=72.1
Q ss_pred eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCcc-----chhhhhcccCCCCC-CccceEEechhhccc
Q 019879 183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-----GIYHDWCEAFSTYP-RTYDLIHAHGLFSLY 256 (334)
Q Consensus 183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli-----~~~~d~~e~l~~yp-~sFDlVha~~vfs~~ 256 (334)
++|=+|||.=.+...|.+.|. .+|+-+|+|+-.++....|+.- ......... ..|+ .|||+|+.-..|.++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~-l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQ-LVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCC--CCceeccccHHHHHHHHhccccCCcceEEEEecchh-ccCCCcceeEEEecCccccc
Confidence 899999999999999999876 4799999998877776666531 111111112 3577 999999988877775
Q ss_pred cCcC-------CHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 257 KDKC-------NIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 257 ~~~c-------~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
...+ .....+.|++|+|+|||.++.-.-
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 3222 224788999999999998776544
No 222
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.96 E-value=0.012 Score=53.28 Aligned_cols=99 Identities=20% Similarity=0.294 Sum_probs=60.3
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc---hh-hhhcccCCCC---CCccceEEe
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IY-HDWCEAFSTY---PRTYDLIHA 249 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~---~~-~d~~e~l~~y---p~sFDlVha 249 (334)
..+|||+=||+|.++..-+.+|+. .|+-+|.+...+..+.+. ++.. ++ .|....+... ...||+|++
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 479999999999999988888863 689999998877765543 2211 11 1111112112 389999988
Q ss_pred chhhccccCcCC--HHHHHHHHH--HhhcCCeEEEEEeChh
Q 019879 250 HGLFSLYKDKCN--IEDILLEMD--RILRPEGAIIIRDEVD 286 (334)
Q Consensus 250 ~~vfs~~~~~c~--~~~~L~Em~--RVLRPGG~lii~D~~~ 286 (334)
.==+ ... +..++.-+. .+|+++|.+++-....
T Consensus 121 DPPY-----~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPY-----AKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --ST-----TSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCc-----ccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 7211 112 256666665 7999999999976443
No 223
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.95 E-value=0.017 Score=49.53 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=35.3
Q ss_pred CCCceEeeecccccHHHHHHHh-----CCCcEEEEEeccCChhhHHHHHHc
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQS-----SKLWVMNVVPTLADKNTLGVIYER 224 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~-----~~v~v~nVv~vD~s~~~L~~a~~R 224 (334)
.+...|+|+|||-|.++..|.. . ....|+++|.++..++.+.+|
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence 5678999999999999988887 3 235799999998777765554
No 224
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.89 E-value=0.03 Score=52.65 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=71.8
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc------cchhhhhcccCCCCC-CccceEEech
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAFSTYP-RTYDLIHAHG 251 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl------i~~~~d~~e~l~~yp-~sFDlVha~~ 251 (334)
.+.++||.+|=|-|-...++.+++..- =+-++.+++.++..++-|. +..-..|-..+++.| +.||-|.-..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~--H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDE--HWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcc--eEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeec
Confidence 567899999999999888888865321 2334567788887766553 222334555677888 8999997653
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
.=.|+ +++..+.+-+.|.|||||.+-+...
T Consensus 178 y~e~y---Edl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 178 YSELY---EDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred hhhHH---HHHHHHHHHHhhhcCCCceEEEecC
Confidence 22343 3577888899999999999887653
No 225
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.81 E-value=0.036 Score=56.63 Aligned_cols=107 Identities=13% Similarity=0.229 Sum_probs=71.1
Q ss_pred HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc--hhhhhcccCCCC--C-C
Q 019879 172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYHDWCEAFSTY--P-R 242 (334)
Q Consensus 172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~--~~~d~~e~l~~y--p-~ 242 (334)
.+..+......+|||+=||.|+|+..|+++. ..|+++++++++++.|.+. |+.. ......+.+.+- . .
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~ 361 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGY 361 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccC
Confidence 3334444455789999999999999999764 5689999998888865442 3221 111223333221 2 5
Q ss_pred ccceEEechhhccccCcCCHH-HHHHHHHHhhcCCeEEEEEeChhhH
Q 019879 243 TYDLIHAHGLFSLYKDKCNIE-DILLEMDRILRPEGAIIIRDEVDEI 288 (334)
Q Consensus 243 sFDlVha~~vfs~~~~~c~~~-~~L~Em~RVLRPGG~lii~D~~~~~ 288 (334)
.||+|+.. +.++.+. .+++++ --++|-..+++|=++..+
T Consensus 362 ~~d~VvvD------PPR~G~~~~~lk~l-~~~~p~~IvYVSCNP~Tl 401 (432)
T COG2265 362 KPDVVVVD------PPRAGADREVLKQL-AKLKPKRIVYVSCNPATL 401 (432)
T ss_pred CCCEEEEC------CCCCCCCHHHHHHH-HhcCCCcEEEEeCCHHHH
Confidence 88999876 6666665 555555 446888899999776543
No 226
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.062 Score=53.41 Aligned_cols=109 Identities=20% Similarity=0.276 Sum_probs=66.9
Q ss_pred hcCCCCCceEeeecccccHHHHHHHhCC-CcEEEEEeccCChhhHHHHHHc----Cccc---hhhhhcccCC-CCC--Cc
Q 019879 175 LLDSGRYRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER----GLIG---IYHDWCEAFS-TYP--RT 243 (334)
Q Consensus 175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~-v~v~nVv~vD~s~~~L~~a~~R----gli~---~~~d~~e~l~-~yp--~s 243 (334)
.+......+||||.++.|+=+.+|++.. -...-|+++|.++.-+....++ |+.. ..+|- ..++ .++ ..
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~-~~~~~~~~~~~~ 229 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA-RRLAELLPGGEK 229 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc-ccccccccccCc
Confidence 3566667899999999999666666531 1113379999998766654443 5432 12221 1122 223 35
Q ss_pred cceEEec------hhhcccc------CcCCH-------HHHHHHHHHhhcCCeEEEEEeC
Q 019879 244 YDLIHAH------GLFSLYK------DKCNI-------EDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 244 FDlVha~------~vfs~~~------~~c~~-------~~~L~Em~RVLRPGG~lii~D~ 284 (334)
||.|... .++..-+ ...++ ..+|....++|||||.|+-++-
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 9999753 4453111 01111 2788999999999999999863
No 227
>PRK13699 putative methylase; Provisional
Probab=95.59 E-value=0.024 Score=52.91 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhcCCeEEEEEe
Q 019879 262 IEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 262 ~~~~L~Em~RVLRPGG~lii~D 283 (334)
++.++.|++|||||||.+++.-
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEe
Confidence 4589999999999999988643
No 228
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.08 E-value=0.051 Score=48.38 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=54.2
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhh-hcccCCC--CC-CccceEEechhh
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHD-WCEAFST--YP-RTYDLIHAHGLF 253 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d-~~e~l~~--yp-~sFDlVha~~vf 253 (334)
-....++|+|||+|-+..+..-.+. -.|+|+|+.++.|++...... ..+..+ .|.+... +. +.||.++.+-=|
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 3457899999999987644444332 358999999999987543321 011111 1122211 23 899999998777
Q ss_pred ccccCcCCHH--HHHHHHHH
Q 019879 254 SLYKDKCNIE--DILLEMDR 271 (334)
Q Consensus 254 s~~~~~c~~~--~~L~Em~R 271 (334)
.--....|++ +...+|.|
T Consensus 125 GTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 125 GTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred CcccccccHHHHHHHHHHHH
Confidence 6433334444 44555555
No 229
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.07 E-value=0.051 Score=52.30 Aligned_cols=122 Identities=19% Similarity=0.223 Sum_probs=71.5
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chh-hhhcccCCCCC-CccceE
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIY-HDWCEAFSTYP-RTYDLI 247 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~-~d~~e~l~~yp-~sFDlV 247 (334)
|.......||||.||.|+-+.+|++.-.--..|++.|.+..-+....++ |+. ... .|-....+.++ ..||.|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 4555567899999999997777666311012589999998877755443 431 112 22111111123 469999
Q ss_pred Eec----h--hhcccc------CcCCH-------HHHHHHHHHhh----cCCeEEEEEeCh----hhHHHHHHHHhc
Q 019879 248 HAH----G--LFSLYK------DKCNI-------EDILLEMDRIL----RPEGAIIIRDEV----DEIIKVKKIVGG 297 (334)
Q Consensus 248 ha~----~--vfs~~~------~~c~~-------~~~L~Em~RVL----RPGG~lii~D~~----~~~~~i~~~~~~ 297 (334)
... . ++..-+ ...++ ..+|....+.| ||||.++-++-. +.-.-|+.+++.
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~ 237 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKR 237 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 753 2 233211 01111 17889999999 999999999743 222345555444
No 230
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.98 E-value=0.029 Score=50.20 Aligned_cols=108 Identities=19% Similarity=0.366 Sum_probs=55.1
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cch-hhhhcccCCCCC-C-ccceEEec-
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGI-YHDWCEAFSTYP-R-TYDLIHAH- 250 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~-~~d~~e~l~~yp-~-sFDlVha~- 250 (334)
+.|+|+-||.||.+.+++... -.|+++|+++..+..++.. |. +.. ..|+.+-+..+. + .||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 379999999999999999874 3689999999888876543 32 111 123333222333 2 28999976
Q ss_pred ----------hhhcc--ccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHH
Q 019879 251 ----------GLFSL--YKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKI 294 (334)
Q Consensus 251 ----------~vfs~--~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~ 294 (334)
.+|.. .....++.+++..+.++- |. .+++--...-+..+.++
T Consensus 78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t-~n-v~l~LPRn~dl~ql~~~ 131 (163)
T PF09445_consen 78 PWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT-PN-VVLFLPRNSDLNQLSQL 131 (163)
T ss_dssp -BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S--EEEEEETTB-HHHHHHT
T ss_pred CCCCccccccCccCHHHccCCCCHHHHHHHHHhhC-CC-EEEEeCCCCCHHHHHHH
Confidence 13322 112234667777765554 33 22222222234455554
No 231
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.91 E-value=0.24 Score=50.08 Aligned_cols=18 Identities=22% Similarity=0.480 Sum_probs=15.4
Q ss_pred CC-CccceEEechhhcccc
Q 019879 240 YP-RTYDLIHAHGLFSLYK 257 (334)
Q Consensus 240 yp-~sFDlVha~~vfs~~~ 257 (334)
|| +|.+++|+++.+|.+.
T Consensus 158 fP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred cCCCceEEEEeeccceecc
Confidence 67 9999999999888654
No 232
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.83 E-value=0.038 Score=46.40 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=31.9
Q ss_pred eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH
Q 019879 183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE 223 (334)
Q Consensus 183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~ 223 (334)
+|||+|||.|.++..++..+.. ..|+++|.++.+.+.+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~ 40 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEE 40 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHH
Confidence 4899999999999988876432 268999999888876554
No 233
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.75 E-value=0.36 Score=46.73 Aligned_cols=139 Identities=16% Similarity=0.142 Sum_probs=66.6
Q ss_pred CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHH-----cCcc---chhhhhcccCCCCC-CccceEEe
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYE-----RGLI---GIYHDWCEAFSTYP-RTYDLIHA 249 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~-----Rgli---~~~~d~~e~l~~yp-~sFDlVha 249 (334)
.+++|+=+|+|.=-+.+.+..+ ......|+++|.+++..+.+++ .||- .+....... .+++ ..||+|+-
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~-~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLD-VTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGG-G-GG----SEEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhc-cccccccCCEEEE
Confidence 3569999999988777666553 1223568899999888776532 1221 111111111 2355 89999987
Q ss_pred chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhh---H-HHHHHHHhcccceEEEecCCCCCCCCceEEEEEec
Q 019879 250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDE---I-IKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 323 (334)
Q Consensus 250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~---~-~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~ 323 (334)
..... .+...-+++|..+.+.++||..+++|..... + ..+.. ...-.|++-...|..++ .-+-++|+||.
T Consensus 199 AalVg--~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~-~~l~gf~~~~~~hP~~~-ViNSvv~~rk~ 272 (276)
T PF03059_consen 199 AALVG--MDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDP-EDLRGFEVLAVVHPTDE-VINSVVFARKK 272 (276)
T ss_dssp -TT-S------SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----T-GGGTTEEEEEEE---TT----EEEEE---
T ss_pred hhhcc--cccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCCh-HHCCCeEEEEEECCCCC-ceeEEEEEEec
Confidence 65443 2344678999999999999999999965431 1 11111 12226777655565443 56789999985
No 234
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.65 E-value=0.0083 Score=48.28 Aligned_cols=95 Identities=17% Similarity=0.095 Sum_probs=34.8
Q ss_pred eeecccccHHHHHHHhC--CCcEEEEEeccCCh---hhHHHHHHcCccchhhhhc----ccCCCCC-CccceEEechhhc
Q 019879 185 MDMNAGFGGFAAAIQSS--KLWVMNVVPTLADK---NTLGVIYERGLIGIYHDWC----EAFSTYP-RTYDLIHAHGLFS 254 (334)
Q Consensus 185 LD~GCG~G~faa~L~~~--~v~v~nVv~vD~s~---~~L~~a~~Rgli~~~~d~~----e~l~~yp-~sFDlVha~~vfs 254 (334)
|.+|+..|..+..|++. ......++.+|..+ ...+.+.+.++...++-.. +.++.++ ++||+|+... .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--D 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--C
Confidence 57898899877776652 11112578888875 3333444334322211111 1123355 8999998763 2
Q ss_pred cccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 255 LYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
|- ......-+..+.+.|+|||.+++-|
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 21 1234567888889999999999876
No 235
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=94.64 E-value=0.11 Score=47.50 Aligned_cols=102 Identities=23% Similarity=0.317 Sum_probs=66.0
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcc-cCCCCC--CccceEE
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCE-AFSTYP--RTYDLIH 248 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e-~l~~yp--~sFDlVh 248 (334)
-...++||+=||+|.++..-+.+|+. .++-+|.+...+.++.+. ++. ..++..+. .+.... +.||+|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 34579999999999999998888864 578888887777766553 211 11221111 122233 3599998
Q ss_pred echhhccccCcCCH--H--HHHHHHHHhhcCCeEEEEEeChh
Q 019879 249 AHGLFSLYKDKCNI--E--DILLEMDRILRPEGAIIIRDEVD 286 (334)
Q Consensus 249 a~~vfs~~~~~c~~--~--~~L~Em~RVLRPGG~lii~D~~~ 286 (334)
..-=|. ...+ + -.+.+-...|+|+|.+++-...+
T Consensus 120 lDPPy~----~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 120 LDPPYA----KGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred eCCCCc----cchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 873333 1112 2 23334668899999999987655
No 236
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.62 E-value=0.49 Score=46.93 Aligned_cols=118 Identities=13% Similarity=0.222 Sum_probs=63.2
Q ss_pred HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCC------
Q 019879 172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFST------ 239 (334)
Q Consensus 172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~------ 239 (334)
++..++.... +|||+-||.|+|+..|++... .|+++++.++++..|.+. |+. ..+..-++++..
T Consensus 189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r 264 (352)
T PF05958_consen 189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAR 264 (352)
T ss_dssp HHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-
T ss_pred HHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhH
Confidence 4444554333 799999999999999998753 589999998888866532 321 112111222210
Q ss_pred ---------CC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEE
Q 019879 240 ---------YP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTK 303 (334)
Q Consensus 240 ---------yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~ 303 (334)
.. ..+|+|+.. +.+..+...+.++ +.++.=.+++|=.+. ...-++.+.+ .+++.
T Consensus 265 ~~~~~~~~~~~~~~~d~vilD------PPR~G~~~~~~~~--~~~~~~ivYvSCnP~tlaRDl~~L~~--~y~~~ 329 (352)
T PF05958_consen 265 EFNRLKGIDLKSFKFDAVILD------PPRAGLDEKVIEL--IKKLKRIVYVSCNPATLARDLKILKE--GYKLE 329 (352)
T ss_dssp GGTTGGGS-GGCTTESEEEE---------TT-SCHHHHHH--HHHSSEEEEEES-HHHHHHHHHHHHC--CEEEE
T ss_pred HHHhhhhhhhhhcCCCEEEEc------CCCCCchHHHHHH--HhcCCeEEEEECCHHHHHHHHHHHhh--cCEEE
Confidence 11 257888665 4454443333333 235667888885555 3344555544 46554
No 237
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.50 E-value=0.028 Score=50.56 Aligned_cols=46 Identities=13% Similarity=0.328 Sum_probs=36.2
Q ss_pred CCCCccceEEechhhccc-----cCc---CCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 239 TYPRTYDLIHAHGLFSLY-----KDK---CNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 239 ~yp~sFDlVha~~vfs~~-----~~~---c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
-|.++||.+.|.++++|. -+. ..-...+.++.|+|||||.|++.-+
T Consensus 59 ~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 59 KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred HhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 467999999999999874 122 2234789999999999999999854
No 238
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.47 E-value=0.17 Score=54.57 Aligned_cols=80 Identities=5% Similarity=-0.007 Sum_probs=44.5
Q ss_pred EEEeccCChhhHHHHHHc----Ccc---chhhhhcccCC-CCC-CccceEEechhhcc-ccCcCCHHHHHHHH---HHhh
Q 019879 207 NVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFS-TYP-RTYDLIHAHGLFSL-YKDKCNIEDILLEM---DRIL 273 (334)
Q Consensus 207 nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~-~yp-~sFDlVha~~vfs~-~~~~c~~~~~L~Em---~RVL 273 (334)
.++++|+++.++..|.+. |+. ...+.....++ +++ ++||+|++|-=+.. +....++..+..++ .|.+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 589999999999877653 542 22221112222 333 68999999832221 11112333443444 4444
Q ss_pred cCCeEEEEEeChh
Q 019879 274 RPEGAIIIRDEVD 286 (334)
Q Consensus 274 RPGG~lii~D~~~ 286 (334)
.||+.+++-....
T Consensus 338 ~~g~~~~llt~~~ 350 (702)
T PRK11783 338 FGGWNAALFSSSP 350 (702)
T ss_pred CCCCeEEEEeCCH
Confidence 4999887766544
No 239
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=0.064 Score=48.50 Aligned_cols=119 Identities=20% Similarity=0.291 Sum_probs=71.9
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhH---HHHHHcCccchh--------hhhcccCCCCC-CccceEE
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTL---GVIYERGLIGIY--------HDWCEAFSTYP-RTYDLIH 248 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L---~~a~~Rgli~~~--------~d~~e~l~~yp-~sFDlVh 248 (334)
.+.||.+|.|.-++|-.|....+.+-.|--.|..+..+ +.+..+.....+ +-|... +... ++||+|.
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aq-sq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQ-SQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhH-HHHhhCcccEEE
Confidence 48999999999998888877655445566667654433 333333211111 111111 2233 7999999
Q ss_pred echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh--hHHHHHHHHhcccceEE
Q 019879 249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKIVGGMRWDTK 303 (334)
Q Consensus 249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~--~~~~i~~~~~~l~W~~~ 303 (334)
|+.-+-. .+.-+.++.-|++.|||.|..++..+.+ .+++..+........+.
T Consensus 109 aADClFf---dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 109 AADCLFF---DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred eccchhH---HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEE
Confidence 9832211 1123578889999999999988877654 45555555544444443
No 240
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.15 E-value=0.2 Score=46.47 Aligned_cols=108 Identities=22% Similarity=0.271 Sum_probs=65.7
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHH----HcCc-cchhhhhcccCCCCCCccceEEechhh
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY----ERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLF 253 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~----~Rgl-i~~~~d~~e~l~~yp~sFDlVha~~vf 253 (334)
-+.++|||+|+|.|--+.+-+..|. ..|+..|+.+...+.+. ..|. +...+. +...-|..||+|.++.+|
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~---d~~g~~~~~Dl~LagDlf 152 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGVSILFTHA---DLIGSPPAFDLLLAGDLF 152 (218)
T ss_pred cccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccceeEEeec---cccCCCcceeEEEeecee
Confidence 3568999999999976555544443 34777888755444322 2232 233332 222334899999999888
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh---hHHHHHHH
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKI 294 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~~ 294 (334)
-. +..-.+++.=.+|+..-|-.+++-|+.+ ..++++.+
T Consensus 153 y~---~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk~~l~~~ 193 (218)
T COG3897 153 YN---HTEADRLIPWKDRLAEAGAAVLVGDPGRAYLPKKRLEFL 193 (218)
T ss_pred cC---chHHHHHHHHHHHHHhCCCEEEEeCCCCCCCchhhhhhh
Confidence 52 2223566775556666666788888765 33445544
No 241
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.12 E-value=0.11 Score=48.55 Aligned_cols=101 Identities=19% Similarity=0.303 Sum_probs=52.0
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----------Cc---cchhhhhcccCCCCCCccceEE
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----------GL---IGIYHDWCEAFSTYPRTYDLIH 248 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----------gl---i~~~~d~~e~l~~yp~sFDlVh 248 (334)
-.+-|||||+|++...|...--- .-+.|.++-...-+-..+| |. +++.+.- ++-+.||-|---.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~n--amk~lpn~f~kgq 138 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTN--AMKFLPNFFEKGQ 138 (249)
T ss_pred ceEEeeccCccchhhhccccCcc-ceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeecc--chhhccchhhhcc
Confidence 36899999999999999875211 2355655532211111121 11 2222211 1112234444333
Q ss_pred echhhccccC-----cC---C--HHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 249 AHGLFSLYKD-----KC---N--IEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 249 a~~vfs~~~~-----~c---~--~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
.+-.|..+++ +. . -...+.|..=+||+||.++.....
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 3322222211 10 0 126888999999999998876543
No 242
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.03 E-value=0.26 Score=43.15 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=65.6
Q ss_pred EEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCC-C-CccceEEechhhccccCc--------CCHHHHHHHHH
Q 019879 208 VVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTY-P-RTYDLIHAHGLFSLYKDK--------CNIEDILLEMD 270 (334)
Q Consensus 208 Vv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~y-p-~sFDlVha~~vfs~~~~~--------c~~~~~L~Em~ 270 (334)
|.++|+.++.+...++| ++. ..+++.=+.+..| + +.+|+++-| |.+++.. ..-..++...-
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 78999998888866655 331 1222222344444 3 489999888 5655421 11237899999
Q ss_pred HhhcCCeEEEEEeC--h----hhHHHHHHHHh---cccceEEEecCCCCCCCCceEEEEEe
Q 019879 271 RILRPEGAIIIRDE--V----DEIIKVKKIVG---GMRWDTKMVDHEDGPLVPEKILVAVK 322 (334)
Q Consensus 271 RVLRPGG~lii~D~--~----~~~~~i~~~~~---~l~W~~~~~~~~~~~~~~e~~l~~~K 322 (334)
++|+|||.+++.-- + +..+.+.+++. .-.|.+..+...+-...+..+++.+|
T Consensus 80 ~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~~pp~l~~ieK 140 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKNNPPLLVIIEK 140 (140)
T ss_dssp HHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS---EEEEEEE
T ss_pred HhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCCCCCEEEEEEC
Confidence 99999999888631 2 23344555544 45688887777766666666777665
No 243
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=93.82 E-value=0.26 Score=45.48 Aligned_cols=120 Identities=22% Similarity=0.187 Sum_probs=53.6
Q ss_pred CCCccccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHH--HHHHHhCCCcEEEEEeccCChhhHHHHHHc--
Q 019879 149 GVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGF--AAAIQSSKLWVMNVVPTLADKNTLGVIYER-- 224 (334)
Q Consensus 149 g~~~e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~f--aa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-- 224 (334)
+++.+.|.+=.- ..+.. ++..++-.+....+|+|||.|.. .++|.- ++ -..+|+++.+.....+...
T Consensus 17 ~~s~~~YGEi~~---~~~~~---il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~--~~~~GIEi~~~~~~~a~~~~~ 87 (205)
T PF08123_consen 17 SFSSETYGEISP---EFVSK---ILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GC--KKSVGIEILPELHDLAEELLE 87 (205)
T ss_dssp TTCCCCGGGCHH---HHHHH---HHHHTT--TT-EEEEES-TTSHHHHHHHHHH-----SEEEEEE-SHHHHHHHHHHHH
T ss_pred cCCCcceeecCH---HHHHH---HHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CC--cEEEEEEechHHHHHHHHHHH
Confidence 445666655433 22322 33333334457999999999984 334433 22 2368888876543333211
Q ss_pred ---------Cc-cchhhhhcccCCCCC------CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879 225 ---------GL-IGIYHDWCEAFSTYP------RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII 281 (334)
Q Consensus 225 ---------gl-i~~~~d~~e~l~~yp------~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii 281 (334)
|. .+.+.-...+|..-+ ..-|+|+++++. + ..++...|.++..-||||-.+|-
T Consensus 88 ~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F--~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 88 ELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--F--DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T---HHHHHHHHHHHTTS-TT-EEEE
T ss_pred HHHHHHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEeccc--c--CHHHHHHHHHHHhcCCCCCEEEE
Confidence 11 000000001111100 234899887532 1 12355667888888988877654
No 244
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=93.74 E-value=0.21 Score=47.87 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=56.6
Q ss_pred ccccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----c
Q 019879 152 AESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----I 227 (334)
Q Consensus 152 ~e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----i 227 (334)
...|-.|...=.+.++ .++.....+||.+|+|.|.++..|++++. .|+++++++.+++...++.- +
T Consensus 9 GQnFL~d~~v~~kIv~-------~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~n~ 78 (259)
T COG0030 9 GQNFLIDKNVIDKIVE-------AANISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAPYDNL 78 (259)
T ss_pred ccccccCHHHHHHHHH-------hcCCCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcccccce
Confidence 4567777665333332 22333357999999999999999999874 47888888888887766631 2
Q ss_pred chhhhhcccCCCCC--C--ccceEEec
Q 019879 228 GIYHDWCEAFSTYP--R--TYDLIHAH 250 (334)
Q Consensus 228 ~~~~d~~e~l~~yp--~--sFDlVha~ 250 (334)
...+ +++.-++ + .++.|++|
T Consensus 79 ~vi~---~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 79 TVIN---GDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred EEEe---CchhcCcchhhcCCCEEEEc
Confidence 2222 2333333 3 68899888
No 245
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.68 E-value=0.026 Score=47.42 Aligned_cols=61 Identities=13% Similarity=0.240 Sum_probs=37.4
Q ss_pred ccceEEechhhc--cccCc-CCHHHHHHHHHHhhcCCeEEEEEeCh--------hhHHHHHHHHhcccceEE
Q 019879 243 TYDLIHAHGLFS--LYKDK-CNIEDILLEMDRILRPEGAIIIRDEV--------DEIIKVKKIVGGMRWDTK 303 (334)
Q Consensus 243 sFDlVha~~vfs--~~~~~-c~~~~~L~Em~RVLRPGG~lii~D~~--------~~~~~i~~~~~~l~W~~~ 303 (334)
.||+|.|-+|-- |+... +.+..++..+++.|||||.||+--++ ...+.+...++++++...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~ 72 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPD 72 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GG
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChH
Confidence 489999976544 44321 34779999999999999999997542 233556666777776543
No 246
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=93.62 E-value=0.4 Score=44.41 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=65.5
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----------cchhhhhcccCCCCC-CccceEEe
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----------IGIYHDWCEAFSTYP-RTYDLIHA 249 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----------i~~~~d~~e~l~~yp-~sFDlVha 249 (334)
..+|||+||..|.+..--.++---..-|.++|+- . +.--+|. ...+...-|.+ | +..|+|.+
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll-h---~~p~~Ga~~i~~~dvtdp~~~~ki~e~l---p~r~VdvVlS 142 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL-H---IEPPEGATIIQGNDVTDPETYRKIFEAL---PNRPVDVVLS 142 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeee-e---ccCCCCcccccccccCCHHHHHHHHHhC---CCCcccEEEe
Confidence 4799999999999876555531011125555542 1 1111221 01122222333 5 88899987
Q ss_pred chhh--------cccc--CcCCHHHHHHHHHHhhcCCeEEEEEe-----ChhhHHHHHHHHhcccceEEEecCCCCCCCC
Q 019879 250 HGLF--------SLYK--DKCNIEDILLEMDRILRPEGAIIIRD-----EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVP 314 (334)
Q Consensus 250 ~~vf--------s~~~--~~c~~~~~L~Em~RVLRPGG~lii~D-----~~~~~~~i~~~~~~l~W~~~~~~~~~~~~~~ 314 (334)
.+.= -|+. +-|+ .+|.=---.|+|+|.|++-- ..+...++++.+..++= ..++.-.+ ...
T Consensus 143 DMapnaTGvr~~Dh~~~i~LC~--s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~--vKP~Asr~-eS~ 217 (232)
T KOG4589|consen 143 DMAPNATGVRIRDHYRSIELCD--SALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKK--VKPDASRD-ESA 217 (232)
T ss_pred ccCCCCcCcchhhHHHHHHHHH--HHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEe--eCCccccc-ccc
Confidence 6321 1211 1111 22322334567999999852 23344556666554432 12221111 147
Q ss_pred ceEEEEEe
Q 019879 315 EKILVAVK 322 (334)
Q Consensus 315 e~~l~~~K 322 (334)
|.+|+|++
T Consensus 218 E~y~v~~~ 225 (232)
T KOG4589|consen 218 ETYLVCLN 225 (232)
T ss_pred ceeeeeee
Confidence 99999986
No 247
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.58 E-value=0.34 Score=45.11 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=60.6
Q ss_pred CceEeeecccccHHHHHHHhC---CCcEEEEEeccCChh------hHH-HHHHcCcc--chhhhhcccCCCCCCccceEE
Q 019879 181 YRNIMDMNAGFGGFAAAIQSS---KLWVMNVVPTLADKN------TLG-VIYERGLI--GIYHDWCEAFSTYPRTYDLIH 248 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~---~v~v~nVv~vD~s~~------~L~-~a~~Rgli--~~~~d~~e~l~~yp~sFDlVh 248 (334)
..+|.|+=-|.|.|.+-|... ...|.+++|.+...- .+. .+++.+.. ..+....-++ +-|+-.|++.
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~-~~pq~~d~~~ 127 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVAL-GAPQKLDLVP 127 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccccc-CCCCcccccc
Confidence 479999999999999888762 225677777765211 111 22222221 1111000112 2236667766
Q ss_pred echhhc--cc--cCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 249 AHGLFS--LY--KDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 249 a~~vfs--~~--~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
.+...| |. .+.....++..++++.|||||.+.+-|+
T Consensus 128 ~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 128 TAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 543333 11 1233467999999999999999999875
No 248
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=93.51 E-value=0.14 Score=49.77 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=69.9
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc--c--chhhhhcccCCCCC-CccceEEec-----
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--I--GIYHDWCEAFSTYP-RTYDLIHAH----- 250 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl--i--~~~~d~~e~l~~yp-~sFDlVha~----- 250 (334)
...||.+|-|||.++..|++.+. .|+++++++.|+....+|+- . +.+.-.-.++.--+ -.||+++++
T Consensus 59 tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 59 TDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSNLPYQI 135 (315)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeeccCCccc
Confidence 47899999999999999999875 58999999999998888742 2 11111112333344 678998885
Q ss_pred ---hhhcccc----CcCCHHHHHHHH--HHhhcCCeEEEEEeC--hhhHHHHHHHHh
Q 019879 251 ---GLFSLYK----DKCNIEDILLEM--DRILRPEGAIIIRDE--VDEIIKVKKIVG 296 (334)
Q Consensus 251 ---~vfs~~~----~~c~~~~~L~Em--~RVLRPGG~lii~D~--~~~~~~i~~~~~ 296 (334)
.||-.+. -+|..-.+=+|+ .-+-|||-.++++-. .+.+.+++-+++
T Consensus 136 SSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~pgd~~Ycrlsin~q~~a~v~~i~K 192 (315)
T KOG0820|consen 136 SSPLVFKLLLHRPVFRCAVLMFQREFALRLVARPGDSLYCRLSINVQLLARVTHIMK 192 (315)
T ss_pred cCHHHHHhcCCCCCcceeeeehhhhhhhhhccCCCCchhceeehhhHHhhcchhhee
Confidence 3444332 234322222222 225678887777643 344555555443
No 249
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=93.40 E-value=0.76 Score=42.43 Aligned_cols=114 Identities=12% Similarity=0.099 Sum_probs=73.4
Q ss_pred EeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH----cCccchhhh-hcccCCCCC-C-ccceEEechhhccc
Q 019879 184 IMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIGIYHD-WCEAFSTYP-R-TYDLIHAHGLFSLY 256 (334)
Q Consensus 184 VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~----Rgli~~~~d-~~e~l~~yp-~-sFDlVha~~vfs~~ 256 (334)
|.|+||--|.+..+|.+++. +..++++|+++.-|+.|.+ .|+.....- ....|..++ + ..|.|+...+=.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG-- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG-- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H--
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH--
Confidence 68999999999999999874 4679999999887775544 354322211 122344454 3 378776553221
Q ss_pred cCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEE
Q 019879 257 KDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 304 (334)
Q Consensus 257 ~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~ 304 (334)
..+.++|.+....++..-.||+.-... ...+++.+....|.+..
T Consensus 78 ---~lI~~ILe~~~~~~~~~~~lILqP~~~-~~~LR~~L~~~gf~I~~ 121 (205)
T PF04816_consen 78 ---ELIIEILEAGPEKLSSAKRLILQPNTH-AYELRRWLYENGFEIID 121 (205)
T ss_dssp ---HHHHHHHHHTGGGGTT--EEEEEESS--HHHHHHHHHHTTEEEEE
T ss_pred ---HHHHHHHHhhHHHhccCCeEEEeCCCC-hHHHHHHHHHCCCEEEE
Confidence 236788888888888888899987755 46788899999998763
No 250
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.26 E-value=2.2 Score=40.01 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=65.5
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhh----HHHHHHcCc-cchhhhhcccCC-CCC---CccceEEe
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNT----LGVIYERGL-IGIYHDWCEAFS-TYP---RTYDLIHA 249 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~----L~~a~~Rgl-i~~~~d~~e~l~-~yp---~sFDlVha 249 (334)
....+||=+|+.+|+...+..+--. -.-+.+++.|+.+ |..+.+|.. +..+.| + .+| .|. ...|+|++
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D-A-~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILED-A-RKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecc-c-CCcHHhhhhcccccEEEE
Confidence 3458999999999999988887311 1237888888764 557777753 444433 1 111 122 56788876
Q ss_pred chhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. ..|+.+.+-+..-+..-||+||++++.
T Consensus 152 D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 152 D-----VAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred e-----cCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 5 345566777888899999999988875
No 251
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=93.24 E-value=0.28 Score=48.78 Aligned_cols=110 Identities=16% Similarity=0.067 Sum_probs=75.7
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc---hhhhhcccCCCCCCccceEEechhh
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYHDWCEAFSTYPRTYDLIHAHGLF 253 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~---~~~d~~e~l~~yp~sFDlVha~~vf 253 (334)
+.+|+||=||.|.|+..++.++.- . |+++|+.+.......+. ++-+ ..+..|..+.+..+.||-|++++.-
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~-~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRP-K-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCc-e-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 478999999999999999988753 2 99999999877754432 2222 2233333333333899999987432
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-------hHHHHHHHHhccc
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-------EIIKVKKIVGGMR 299 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-------~~~~i~~~~~~l~ 299 (334)
+...++-..-+.||+||.+.+-+... ....+++...++.
T Consensus 267 -------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~ 312 (341)
T COG2520 267 -------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGG 312 (341)
T ss_pred -------cchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhcc
Confidence 22457777888999999999876431 4566777766663
No 252
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.22 E-value=0.1 Score=51.55 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=36.8
Q ss_pred CCCCceEeeecccccHHHHHHHhC---------------CCcEEEEEeccCChhhHHHHHHc-----------C------
Q 019879 178 SGRYRNIMDMNAGFGGFAAAIQSS---------------KLWVMNVVPTLADKNTLGVIYER-----------G------ 225 (334)
Q Consensus 178 ~~~~r~VLD~GCG~G~faa~L~~~---------------~v~v~nVv~vD~s~~~L~~a~~R-----------g------ 225 (334)
..+.-+|.|+||..|..+..+.+. ..-...|.-.|...+--...+.. +
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 345679999999999866544321 11235677777765532222111 0
Q ss_pred ccchhhhhcccCCCCC-CccceEEechhhcccc
Q 019879 226 LIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYK 257 (334)
Q Consensus 226 li~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~ 257 (334)
..+.+. +. -|| +|.|++|+++.+|.+.
T Consensus 94 vpgSFy---~r--LfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 94 VPGSFY---GR--LFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp EES-TT---S----S-TT-EEEEEEES-TTB-S
T ss_pred cCchhh---hc--cCCCCceEEEEEechhhhcc
Confidence 111111 11 267 9999999999888653
No 253
>PRK11524 putative methyltransferase; Provisional
Probab=93.19 E-value=0.26 Score=47.19 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhcCCeEEEEEeChh
Q 019879 262 IEDILLEMDRILRPEGAIIIRDEVD 286 (334)
Q Consensus 262 ~~~~L~Em~RVLRPGG~lii~D~~~ 286 (334)
+..+|.|+.|+|||||.+++.....
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~~~~ 83 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMNSTE 83 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCch
Confidence 3579999999999999999875544
No 254
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.60 E-value=0.8 Score=43.13 Aligned_cols=90 Identities=14% Similarity=0.201 Sum_probs=56.8
Q ss_pred CceEeeeccc-ccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccchhhh----hcccCCCCC-CccceEEechhh
Q 019879 181 YRNIMDMNAG-FGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIYHD----WCEAFSTYP-RTYDLIHAHGLF 253 (334)
Q Consensus 181 ~r~VLD~GCG-~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d----~~e~l~~yp-~sFDlVha~~vf 253 (334)
..+||..||| .|.++..++.. +. +|+.++.++...+.+.+.|....... ..+.+...+ +.+|+|+...
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~G~---~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~-- 240 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAMGA---AVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV-- 240 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC---EEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC--
Confidence 4688888876 36677777663 53 47777778788887776664221111 001010123 6789886431
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.....+.++.|.|+|||.++..
T Consensus 241 -------g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 241 -------GTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred -------CCHHHHHHHHHHhhcCCEEEEE
Confidence 1245888999999999999875
No 255
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=92.03 E-value=0.51 Score=46.74 Aligned_cols=120 Identities=19% Similarity=0.234 Sum_probs=75.1
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHH---HHHHc----C--------------------c----cch
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYER----G--------------------L----IGI 229 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~---~a~~R----g--------------------l----i~~ 229 (334)
.-+||==|||.|++|-.|+..|. ++-+-+.|--|+- ++..- + | +..
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 35799999999999999988763 4566566655543 22211 1 0 000
Q ss_pred hhh------------hcccCC-CCC-----CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE--------e
Q 019879 230 YHD------------WCEAFS-TYP-----RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR--------D 283 (334)
Q Consensus 230 ~~d------------~~e~l~-~yp-----~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~--------D 283 (334)
.+- ++.+|. -|+ ++||+|+..+++- ...++-..+.-|..+|+|||..|-- |
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID---Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d 304 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID---TAHNILEYIDTIYKILKPGGVWINLGPLLYHFED 304 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee---chHHHHHHHHHHHHhccCCcEEEeccceeeeccC
Confidence 000 112221 133 3699987764432 2336789999999999999987743 3
Q ss_pred Ch--------h-hHHHHHHHHhcccceEEEec
Q 019879 284 EV--------D-EIIKVKKIVGGMRWDTKMVD 306 (334)
Q Consensus 284 ~~--------~-~~~~i~~~~~~l~W~~~~~~ 306 (334)
.. + ..+.+..+++.+.|++....
T Consensus 305 ~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 305 THGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 21 1 35678888999999887643
No 256
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=91.79 E-value=0.18 Score=47.65 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=44.6
Q ss_pred cccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879 153 ESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 224 (334)
Q Consensus 153 e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R 224 (334)
..|-.|...=++.+ ..++......|||+|+|+|.++..|.+.+ .+|+.++.++.+.+...++
T Consensus 10 QnFL~~~~~~~~Iv-------~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~ 71 (262)
T PF00398_consen 10 QNFLVDPNIADKIV-------DALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKER 71 (262)
T ss_dssp SSEEEHHHHHHHHH-------HHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHH
T ss_pred cCeeCCHHHHHHHH-------HhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHH
Confidence 45666655422222 22333356899999999999999999876 4789999998888877764
No 257
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=91.18 E-value=0.9 Score=43.80 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=53.1
Q ss_pred CCCCCceEeeecccccH--HHHHHHh---CCCcEEEEEeccCChhhHHHHHH------cCccchh-hhhccc--CCCCC-
Q 019879 177 DSGRYRNIMDMNAGFGG--FAAAIQS---SKLWVMNVVPTLADKNTLGVIYE------RGLIGIY-HDWCEA--FSTYP- 241 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~--faa~L~~---~~v~v~nVv~vD~s~~~L~~a~~------Rgli~~~-~d~~e~--l~~yp- 241 (334)
....++..||+|||.=+ ..-..++ .. ..|+-+|..+-.+..+.. +|....+ .|..+. +..-|
T Consensus 65 ~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~---aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~ 141 (267)
T PF04672_consen 65 EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPD---ARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPE 141 (267)
T ss_dssp CTT---EEEEET--S--SS-HHHHHHHH-TT----EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHH
T ss_pred HhcCcceEEEcccCCCCCCCHhHHHHhhCCC---ceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHH
Confidence 33378999999999653 2222222 23 468999998655442211 1111111 111111 10111
Q ss_pred --Cccc-----eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 242 --RTYD-----LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 242 --~sFD-----lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
+.+| .|....+|||+.+..++..++..+...|-||.+|+|+.
T Consensus 142 ~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp HHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred HHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 3344 35666799999887899999999999999999999985
No 258
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.17 E-value=0.35 Score=48.06 Aligned_cols=90 Identities=16% Similarity=0.130 Sum_probs=60.2
Q ss_pred CceEeeeccc-ccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcc-cCCCCCCccceEEechhhcccc
Q 019879 181 YRNIMDMNAG-FGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCE-AFSTYPRTYDLIHAHGLFSLYK 257 (334)
Q Consensus 181 ~r~VLD~GCG-~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e-~l~~yp~sFDlVha~~vfs~~~ 257 (334)
...|+=+|+| .|..|..++. .+ .+|+++|.+++-++.+.+-|..-.+..-.+ .+......||+|+..-.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----- 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----- 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-----
Confidence 4667777766 4456777766 34 679999999999999998875332221101 11122345999976522
Q ss_pred CcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 258 DKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 258 ~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
...+...-+.||+||.+++--
T Consensus 239 -----~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 239 -----PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred -----hhhHHHHHHHHhcCCEEEEEC
Confidence 456778889999999999864
No 259
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=91.07 E-value=1 Score=46.16 Aligned_cols=105 Identities=21% Similarity=0.342 Sum_probs=63.7
Q ss_pred cCCCCCceEeeecccccH---HHHHHHh-CCCcEEEEEeccCChhhHHHHH----HcCcc---chhhhhcccCC--CCCC
Q 019879 176 LDSGRYRNIMDMNAGFGG---FAAAIQS-SKLWVMNVVPTLADKNTLGVIY----ERGLI---GIYHDWCEAFS--TYPR 242 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~---faa~L~~-~~v~v~nVv~vD~s~~~L~~a~----~Rgli---~~~~d~~e~l~--~yp~ 242 (334)
+++...-+||||.|..|| +.|+|.. .|+ |++.|.+.+-+..+. +-|.. ...+|-- .|| -|+.
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~----I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~-ef~~~~~~~ 311 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGV----IFANDSNENRLKSLKANLHRLGVTNTIVSNYDGR-EFPEKEFPG 311 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCce----EEecccchHHHHHHHHHHHHhCCCceEEEccCcc-cccccccCc
Confidence 456677899999999997 4555544 453 788888777665433 23542 2222211 222 2456
Q ss_pred ccceEE----ech--hhccccCcC------C------H-HHHHHHHHHhhcCCeEEEEEeCh
Q 019879 243 TYDLIH----AHG--LFSLYKDKC------N------I-EDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 243 sFDlVh----a~~--vfs~~~~~c------~------~-~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
+||-|. |+. |.+--..-| + + .++|.-....+||||+|+-++-.
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 999886 555 554211001 0 1 15666677889999999999743
No 260
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=90.66 E-value=2.1 Score=40.85 Aligned_cols=98 Identities=22% Similarity=0.277 Sum_probs=55.9
Q ss_pred CCceEeeecccccH--HHHHHHhCCCcEEEEEeccCChh--hHHHHHHcCc----------cchhhhhcccCC--CCCCc
Q 019879 180 RYRNIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKN--TLGVIYERGL----------IGIYHDWCEAFS--TYPRT 243 (334)
Q Consensus 180 ~~r~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~--~L~~a~~Rgl----------i~~~~d~~e~l~--~yp~s 243 (334)
...+||.+|+|+|- .++++... .+|+-.|...- .|+...+.+. +....+|-++.. .++..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~----~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG----AEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc----ceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 46799999999994 33444322 35666666532 2333322221 112235555432 34434
Q ss_pred -cceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 244 -YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 244 -FDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
||+|.++.++.+.... +.++.=|.-.|--+|.+++...
T Consensus 162 ~~DlilasDvvy~~~~~---e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 162 PFDLILASDVVYEEESF---EGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred cccEEEEeeeeecCCcc---hhHHHHHHHHHhcCCeEEEEEe
Confidence 9999999999865444 4455555556777776666543
No 261
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.65 E-value=0.9 Score=44.81 Aligned_cols=101 Identities=20% Similarity=0.110 Sum_probs=61.2
Q ss_pred CceEeeecccc-cHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc-Cc--cchhh--hhcccCCCC-C-CccceEEech
Q 019879 181 YRNIMDMNAGF-GGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER-GL--IGIYH--DWCEAFSTY-P-RTYDLIHAHG 251 (334)
Q Consensus 181 ~r~VLD~GCG~-G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R-gl--i~~~~--d~~e~l~~y-p-~sFDlVha~~ 251 (334)
..+||..|||. |.++..+++. +. ..|+.++.++.+++.+.+. +. +.... ++.+.+..+ + +.+|+|+-..
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~--~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGA--ERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 46899999987 7777777664 43 2478888888888888877 32 11111 122222112 2 4789886531
Q ss_pred h-------hcccc-----CcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 252 L-------FSLYK-----DKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 252 v-------fs~~~-----~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
- ++++. ..-+....+.++.|.|+|||.+++..
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 1 01110 00122568899999999999998864
No 262
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=89.68 E-value=1.5 Score=43.23 Aligned_cols=85 Identities=24% Similarity=0.325 Sum_probs=53.8
Q ss_pred hhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhh
Q 019879 174 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLF 253 (334)
Q Consensus 174 ~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vf 253 (334)
..|........+|.=-|.||-+.+++++--. ..|+++|-++++++.+.++ +..|.+.|-++|++ |
T Consensus 14 ~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~------------l~~~~~r~~~~~~~--F 78 (310)
T PF01795_consen 14 EALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKER------------LKKFDDRFIFIHGN--F 78 (310)
T ss_dssp HHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCC------------TCCCCTTEEEEES---G
T ss_pred HhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHH------------HhhccceEEEEecc--H
Confidence 3344445579999999999999999986222 5799999999998887765 23567888899887 4
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEE
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAI 279 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~l 279 (334)
+ ++...+.+...+-+..|.|
T Consensus 79 ~------~l~~~l~~~~~~~~~dgiL 98 (310)
T PF01795_consen 79 S------NLDEYLKELNGINKVDGIL 98 (310)
T ss_dssp G------GHHHHHHHTTTTS-EEEEE
T ss_pred H------HHHHHHHHccCCCccCEEE
Confidence 3 3455666553333444544
No 263
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=88.82 E-value=1.1 Score=45.54 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=64.1
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc-h-----hhhhcc-cCC---CCCCccc
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-I-----YHDWCE-AFS---TYPRTYD 245 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~-~-----~~d~~e-~l~---~yp~sFD 245 (334)
..++||=+|-|-|--++.|++.+ .++.++-+|.+|.|++++... .+.+ . .+-..+ +|. +-.+.||
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 46899999999999899998876 347899999999999987632 1110 0 000011 111 1126899
Q ss_pred eEEechhhccccCcCC--H-----HHHHHHHHHhhcCCeEEEEEeC
Q 019879 246 LIHAHGLFSLYKDKCN--I-----EDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 246 lVha~~vfs~~~~~c~--~-----~~~L~Em~RVLRPGG~lii~D~ 284 (334)
.|+.. ++|... + ..+-.-..|-|+++|.+++.-.
T Consensus 368 ~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 368 VVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 99876 222221 1 2344455677889999999753
No 264
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.75 E-value=3.7 Score=41.58 Aligned_cols=112 Identities=9% Similarity=0.078 Sum_probs=67.5
Q ss_pred CCCCCceEeeecccccHHHHHH--HhCCCc-----------------------------EE-------EEEeccCChhhH
Q 019879 177 DSGRYRNIMDMNAGFGGFAAAI--QSSKLW-----------------------------VM-------NVVPTLADKNTL 218 (334)
Q Consensus 177 ~~~~~r~VLD~GCG~G~faa~L--~~~~v~-----------------------------v~-------nVv~vD~s~~~L 218 (334)
++.....++|==||+|+|+... +..++- -. .+.++|+++.++
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i 267 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI 267 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence 5555578999999999987433 322100 00 267999999999
Q ss_pred HHHHHc----Cc---cchhhhhcccCCCCCCccceEEechhhc-cccCcCCHH----HHHHHHHHhhcCCeEEEEEeChh
Q 019879 219 GVIYER----GL---IGIYHDWCEAFSTYPRTYDLIHAHGLFS-LYKDKCNIE----DILLEMDRILRPEGAIIIRDEVD 286 (334)
Q Consensus 219 ~~a~~R----gl---i~~~~d~~e~l~~yp~sFDlVha~~vfs-~~~~~c~~~----~~L~Em~RVLRPGG~lii~D~~~ 286 (334)
+.|+.. |+ |.........+.+....+|+|+||-=.. -+.+...++ .+..+|.|.++--+.++|+....
T Consensus 268 ~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e~ 347 (381)
T COG0116 268 EGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSED 347 (381)
T ss_pred HHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccHH
Confidence 977653 43 3333222233322228999999982211 111222233 45567778888888899888766
Q ss_pred hH
Q 019879 287 EI 288 (334)
Q Consensus 287 ~~ 288 (334)
..
T Consensus 348 ~~ 349 (381)
T COG0116 348 LL 349 (381)
T ss_pred HH
Confidence 43
No 265
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=88.53 E-value=1.2 Score=46.07 Aligned_cols=106 Identities=18% Similarity=0.125 Sum_probs=66.8
Q ss_pred CCCCceEeeecccccH--HHHHHHhCCCcEEEEEeccCChhhHHHHHH--cC--ccc--hhhh--hcccCCCCC--Cccc
Q 019879 178 SGRYRNIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLGVIYE--RG--LIG--IYHD--WCEAFSTYP--RTYD 245 (334)
Q Consensus 178 ~~~~r~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~~L~~a~~--Rg--li~--~~~d--~~e~l~~yp--~sFD 245 (334)
.-.+..++|+|-|.|. .++.+.-++ ..--++-||-+..|+..+.. |+ -++ ..+. .-+.+.|-+ +.||
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yD 276 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYD 276 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCccccee
Confidence 3456789999887764 444444433 22346778888788775432 22 111 1111 012344555 6699
Q ss_pred eEEechhhccccCcCCHHHHHHHHHH-hhcCCeEEEEEeC
Q 019879 246 LIHAHGLFSLYKDKCNIEDILLEMDR-ILRPEGAIIIRDE 284 (334)
Q Consensus 246 lVha~~vfs~~~~~c~~~~~L~Em~R-VLRPGG~lii~D~ 284 (334)
+|+|++.++++.....-.++..+..| ..||||++++-..
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 99999999987655555667777765 6899999999764
No 266
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=88.14 E-value=3.3 Score=40.46 Aligned_cols=133 Identities=12% Similarity=0.152 Sum_probs=78.2
Q ss_pred CccccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH----cCc
Q 019879 151 SAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGL 226 (334)
Q Consensus 151 ~~e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~----Rgl 226 (334)
+.-.|..|... +-. .|.-.....|+..|.|.|++.-+++..-.-...+.-+|+++.--+.|++ .|+
T Consensus 86 TQI~Yt~Dia~----I~~------~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi 155 (314)
T KOG2915|consen 86 TQILYTPDIAM----ILS------MLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI 155 (314)
T ss_pred ceEEecccHHH----HHH------HhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC
Confidence 44556666553 222 2333345899999999999998888753333578888988654444443 343
Q ss_pred c---c-hhhhhcccCCCCC---CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE--eChhhHHHHHHHHhc
Q 019879 227 I---G-IYHDWCEAFSTYP---RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR--DEVDEIIKVKKIVGG 297 (334)
Q Consensus 227 i---~-~~~d~~e~l~~yp---~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~--D~~~~~~~i~~~~~~ 297 (334)
. . .+.|.|.+ .|+ ..+|.|+-. ++ .+-.++--.+-+||-+|--+++ --.+.+++.-..+.+
T Consensus 156 ~~~vt~~hrDVc~~--GF~~ks~~aDaVFLD-----lP---aPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~ 225 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGS--GFLIKSLKADAVFLD-----LP---APWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRS 225 (314)
T ss_pred CcceEEEEeecccC--CccccccccceEEEc-----CC---ChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHh
Confidence 2 2 23466754 333 788888654 22 1223444455589987743333 233445555555777
Q ss_pred ccceEE
Q 019879 298 MRWDTK 303 (334)
Q Consensus 298 l~W~~~ 303 (334)
+.|...
T Consensus 226 ~gf~~i 231 (314)
T KOG2915|consen 226 LGFIEI 231 (314)
T ss_pred CCCceE
Confidence 788543
No 267
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.80 E-value=0.29 Score=46.55 Aligned_cols=115 Identities=17% Similarity=0.242 Sum_probs=68.2
Q ss_pred CceEeeecccccHHHHHHHhC-----CCcEE---EEEeccCChhhHHHHHHcCccchhhhhc-----cc-CCCCC-Cccc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSS-----KLWVM---NVVPTLADKNTLGVIYERGLIGIYHDWC-----EA-FSTYP-RTYD 245 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~-----~v~v~---nVv~vD~s~~~L~~a~~Rgli~~~~d~~-----e~-l~~yp-~sFD 245 (334)
..+|.|+.+..|.+...|.++ .-... -++++|+. .|..+ .|.+....|.. |. +..|. .--|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ-~MaPI---~GV~qlq~DIT~~stae~Ii~hfggekAd 117 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQ-PMAPI---EGVIQLQGDITSASTAEAIIEHFGGEKAD 117 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecc-cCCcc---CceEEeecccCCHhHHHHHHHHhCCCCcc
Confidence 689999999999987777552 10111 28888886 56553 23322111111 11 22356 5789
Q ss_pred eEEechh-----hcc---ccCcCCHHHHHHHHHHhhcCCeEEEEE-----eChhhHHHHHHHHhccc
Q 019879 246 LIHAHGL-----FSL---YKDKCNIEDILLEMDRILRPEGAIIIR-----DEVDEIIKVKKIVGGMR 299 (334)
Q Consensus 246 lVha~~v-----fs~---~~~~c~~~~~L~Em~RVLRPGG~lii~-----D~~~~~~~i~~~~~~l~ 299 (334)
+|+|... +|- +.+..-+..+|.=.-+||||||.|+-- |..-....++.+++++.
T Consensus 118 lVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~kv~ 184 (294)
T KOG1099|consen 118 LVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFKKVT 184 (294)
T ss_pred EEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhhcee
Confidence 9999743 221 112223446777788999999999863 33334456777766653
No 268
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=87.37 E-value=1.6 Score=41.76 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=42.6
Q ss_pred eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc-hhhhhcccCCCC--CCccceEEec
Q 019879 183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG-IYHDWCEAFSTY--PRTYDLIHAH 250 (334)
Q Consensus 183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~-~~~d~~e~l~~y--p~sFDlVha~ 250 (334)
+|+|+-||.|++...|.+.|+. .|.++|.++..++... +.... .++...+.+... ...+|+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~-~N~~~~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYE-ANFPNKLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHH-HhCCCCCccCccccCchhhcCCCCCEEEeC
Confidence 6999999999999999888754 4889999977666533 32211 122112222221 3569999987
No 269
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=87.33 E-value=2 Score=39.99 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=56.6
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-ccch--hhhhcccCCCCC-CccceEEechhhcccc
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGI--YHDWCEAFSTYP-RTYDLIHAHGLFSLYK 257 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-li~~--~~d~~e~l~~yp-~sFDlVha~~vfs~~~ 257 (334)
..+-|+|+|+|-++..-+.+. -.|.+++..+.....+.+.- +.+. ..-..++...|+ ..-|+|+|-++=+.+.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhh
Confidence 579999999997654333321 24788888766655555431 1111 001124556788 8889999986555443
Q ss_pred CcCCHHHHHHHHHHhhcCCeEEEE
Q 019879 258 DKCNIEDILLEMDRILRPEGAIII 281 (334)
Q Consensus 258 ~~c~~~~~L~Em~RVLRPGG~lii 281 (334)
. +....++.-+-.-||-.|.+|=
T Consensus 111 ~-E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 E-EKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred c-ccccHHHHHHHHHhhcCCcccc
Confidence 2 2233455555556777777663
No 270
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=86.95 E-value=2.6 Score=41.34 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=38.7
Q ss_pred HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879 173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 224 (334)
Q Consensus 173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R 224 (334)
+..+.......++|.=+|.||-+.++++.-.. ..|+++|.++.++..+.++
T Consensus 13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH
Confidence 33344344568999999999999999875212 4699999999999888764
No 271
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=86.58 E-value=0.18 Score=48.55 Aligned_cols=60 Identities=25% Similarity=0.582 Sum_probs=41.6
Q ss_pred eeEeecccccCCceEEEecCCCCcccccccc-CCChHHHHHHHHHHHHHHHhhcccccceecce
Q 019879 14 YMIEVDRVLRPGGYWVLSGPPINWKTNYKAW-QRPKEELQEEQRKIEEIANLLCWEKKSEKGEI 76 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~pp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~cw~~~~~~~~~ 76 (334)
||-.|.++|+|||+||=-||-.|- +.+. ..++..++=-+++|..+++.+=|+.+.++..+
T Consensus 184 Yi~tI~~lLkpgG~WIN~GPLlyh---~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~i 244 (270)
T PF07942_consen 184 YIETIEHLLKPGGYWINFGPLLYH---FEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEESSI 244 (270)
T ss_pred HHHHHHHHhccCCEEEecCCcccc---CCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEEee
Confidence 556688999999999999997622 2111 01111233457889999999999998766544
No 272
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=85.40 E-value=0.87 Score=40.39 Aligned_cols=22 Identities=41% Similarity=0.603 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhcCCeEEEEEe
Q 019879 262 IEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 262 ~~~~L~Em~RVLRPGG~lii~D 283 (334)
+..++.|+.|||||||.+++.-
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~ 56 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFI 56 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEEe
Confidence 5689999999999999988863
No 273
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=85.02 E-value=0.43 Score=40.14 Aligned_cols=23 Identities=48% Similarity=1.063 Sum_probs=14.9
Q ss_pred eecccccCCceEEEecCCCCcccccc
Q 019879 17 EVDRVLRPGGYWVLSGPPINWKTNYK 42 (334)
Q Consensus 17 E~dR~LrpgGy~v~s~pp~~~~~~~~ 42 (334)
-+=++|||||+||+-..| |+. |+
T Consensus 29 ~~~~~L~pGG~lilEpQ~--w~s-Y~ 51 (110)
T PF06859_consen 29 RIYSLLRPGGILILEPQP--WKS-YK 51 (110)
T ss_dssp HHHHHEEEEEEEEEE-----HHH-HH
T ss_pred HHHHhhCCCCEEEEeCCC--cHH-HH
Confidence 344679999999999886 554 44
No 274
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.72 E-value=7.8 Score=37.74 Aligned_cols=134 Identities=18% Similarity=0.299 Sum_probs=69.4
Q ss_pred EeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc-hhhhhcccCCCCC-CccceEEec---hhhccccC
Q 019879 184 IMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG-IYHDWCEAFSTYP-RTYDLIHAH---GLFSLYKD 258 (334)
Q Consensus 184 VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~-~~~d~~e~l~~yp-~sFDlVha~---~vfs~~~~ 258 (334)
|+|+=||.|++...|.+.|..+ +.++|..+...+. +++.... .++...+.+.+-. ..+|+++++ .-||....
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~--~~a~e~~~~a~~t-y~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKC--VFASEIDKYAQKT-YEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeE--EEEEeCCHHHHHH-HHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 6899999999999999888543 6678888655544 3332211 1111112222111 358999876 23332111
Q ss_pred ---cCC-HHHHHHHHHHhh---cCCeEEEEEeChh---------hHHHHHHHHhcccceEE--EecC--CCCCCCCceE-
Q 019879 259 ---KCN-IEDILLEMDRIL---RPEGAIIIRDEVD---------EIIKVKKIVGGMRWDTK--MVDH--EDGPLVPEKI- 317 (334)
Q Consensus 259 ---~c~-~~~~L~Em~RVL---RPGG~lii~D~~~---------~~~~i~~~~~~l~W~~~--~~~~--~~~~~~~e~~- 317 (334)
..+ -..++.|+.|++ +|. +++-+++. .+..|...+..+..++. +.+. -.-|+.++++
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f 155 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIY 155 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEE
Confidence 112 224566666666 774 55555442 22333333444444432 2222 1236667776
Q ss_pred EEEEe
Q 019879 318 LVAVK 322 (334)
Q Consensus 318 l~~~K 322 (334)
+|+.+
T Consensus 156 ~ia~r 160 (315)
T TIGR00675 156 IVGFR 160 (315)
T ss_pred EEEEe
Confidence 56655
No 275
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=83.32 E-value=5.4 Score=35.54 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=54.3
Q ss_pred ecccccHHHHHHHhCCCcEEEEEeccCCh-h-----------hHHHHHHcCccchhhhhcccCCC---CC-CccceEEec
Q 019879 187 MNAGFGGFAAAIQSSKLWVMNVVPTLADK-N-----------TLGVIYERGLIGIYHDWCEAFST---YP-RTYDLIHAH 250 (334)
Q Consensus 187 ~GCG~G~faa~L~~~~v~v~nVv~vD~s~-~-----------~L~~a~~Rgli~~~~d~~e~l~~---yp-~sFDlVha~ 250 (334)
+|=|-=+|+++|++.-....++++..... + .++...++|....+.-.+..+.. .. +.||.|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 44455578888887522133555543321 2 22233344432222222333322 23 899999887
Q ss_pred hhhcccc-----CcC-------CHHHHHHHHHHhhcCCeEEEEEe
Q 019879 251 GLFSLYK-----DKC-------NIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 251 ~vfs~~~-----~~c-------~~~~~L~Em~RVLRPGG~lii~D 283 (334)
|.|.- ..+ -+..+|+-..++|+|+|.+.++-
T Consensus 83 --FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 83 --FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred --CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 66654 112 23478889999999999999984
No 276
>PHA01634 hypothetical protein
Probab=82.69 E-value=3.3 Score=36.27 Aligned_cols=59 Identities=19% Similarity=0.131 Sum_probs=43.5
Q ss_pred hhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH
Q 019879 158 DSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE 223 (334)
Q Consensus 158 d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~ 223 (334)
+...|+.....|..+ + -..++|+|+|++.|.-+.+++-+|+. -|+++..++...+...+
T Consensus 11 ~c~ywrey~~~Y~~i----d-vk~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 11 ECDYWREYPHAYGML----N-VYQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cchHHHHHHHHhhhe----e-ecCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHH
Confidence 467788888777632 1 23589999999999999998888764 58888888665554433
No 277
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=81.89 E-value=2.3 Score=40.69 Aligned_cols=118 Identities=10% Similarity=0.114 Sum_probs=65.8
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-ccchhh--hhcccCCC-CCCccceEEechhhccc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYH--DWCEAFST-YPRTYDLIHAHGLFSLY 256 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-li~~~~--d~~e~l~~-yp~sFDlVha~~vfs~~ 256 (334)
+.+|||+|||.=-|+.-......- ..+.+.|++..+++++..-. ..+.-+ .+++-+.. .+.+.|+.+.-=+++.+
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~-a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPG-ATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPCL 184 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHHH
T ss_pred CchhhhhhccCCceehhhcccCCC-cEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHHH
Confidence 689999999999999877764322 36899999988887654321 111110 11222222 33789999876556544
Q ss_pred cC-cCCH-HHHHHHHHHhhcCCeEEEEEeChh------------hHHHHHHHHhcccceEEE
Q 019879 257 KD-KCNI-EDILLEMDRILRPEGAIIIRDEVD------------EIIKVKKIVGGMRWDTKM 304 (334)
Q Consensus 257 ~~-~c~~-~~~L~Em~RVLRPGG~lii~D~~~------------~~~~i~~~~~~l~W~~~~ 304 (334)
.+ .... -.+|.+++ .| .+++|-+.. +-..++..+..-.|.+..
T Consensus 185 e~q~~g~g~~ll~~~~---~~--~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~ 241 (251)
T PF07091_consen 185 ERQRRGAGLELLDALR---SP--HVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDR 241 (251)
T ss_dssp HHHSTTHHHHHHHHSC---ES--EEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEE
T ss_pred HHHhcchHHHHHHHhC---CC--eEEEeccccccccCccccccCHHHHHHHhcccCCceeee
Confidence 21 1111 23333332 22 677775421 335577777788887654
No 278
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=81.15 E-value=15 Score=35.50 Aligned_cols=89 Identities=19% Similarity=0.226 Sum_probs=52.5
Q ss_pred CceEeeecccc-cHHHHHHHh-CCCcEEEEEeccC---ChhhHHHHHHcCccchhhhhc-ccC--CCCCCccceEEechh
Q 019879 181 YRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLA---DKNTLGVIYERGLIGIYHDWC-EAF--STYPRTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~---s~~~L~~a~~Rgli~~~~d~~-e~l--~~yp~sFDlVha~~v 252 (334)
..+||=+|||. |.++..+++ .++ +|+.++. ++.-++.+.+.|.... +.. +++ ....+.||+|+-..
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~---~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~- 246 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGF---EVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEAT- 246 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECc-
Confidence 46888888864 345555555 354 4565554 5667777777764321 111 110 00124588875431
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
.-...+.+..++|||||.+++..
T Consensus 247 --------g~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 247 --------GVPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred --------CCHHHHHHHHHHccCCcEEEEEe
Confidence 11347889999999999998753
No 279
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=81.02 E-value=6.7 Score=38.69 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=50.1
Q ss_pred HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEec
Q 019879 173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH 250 (334)
Q Consensus 173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~ 250 (334)
+..|........+|.==|.||.+.+++++......++++|-.+.+++.+.++- .+|...|-+||.+
T Consensus 16 i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l------------~~~~~r~~~v~~~ 81 (314)
T COG0275 16 VELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERL------------KEFDGRVTLVHGN 81 (314)
T ss_pred HHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHh------------hccCCcEEEEeCc
Confidence 33444444579999999999999999987533356999999999999888752 3456677777776
No 280
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=80.56 E-value=6.2 Score=37.08 Aligned_cols=134 Identities=16% Similarity=0.342 Sum_probs=69.5
Q ss_pred eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCC--CCCCccceEEec---hhhccc
Q 019879 183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFS--TYPRTYDLIHAH---GLFSLY 256 (334)
Q Consensus 183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~--~yp~sFDlVha~---~vfs~~ 256 (334)
+++|+=||.|++...|.+.|+ --|.++|+++..... +++.. .....|.. .+. .+|..+|+++++ .-||..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~-y~~N~~~~~~~Di~-~~~~~~l~~~~D~l~ggpPCQ~fS~a 77 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACET-YKANFPEVICGDIT-EIDPSDLPKDVDLLIGGPPCQGFSIA 77 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHH-HHHHHTEEEESHGG-GCHHHHHHHT-SEEEEE---TTTSTT
T ss_pred cEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHh-hhhccccccccccc-ccccccccccceEEEeccCCceEecc
Confidence 699999999999999999884 348899998765553 33322 11111211 111 133358999876 233322
Q ss_pred c------C-cCCHHHHHHHHHHhhcCCeEEEEEeCh---------hhHHHHHHHHhcccceEE--EecC--CCCCCCCce
Q 019879 257 K------D-KCNIEDILLEMDRILRPEGAIIIRDEV---------DEIIKVKKIVGGMRWDTK--MVDH--EDGPLVPEK 316 (334)
Q Consensus 257 ~------~-~c~~~~~L~Em~RVLRPGG~lii~D~~---------~~~~~i~~~~~~l~W~~~--~~~~--~~~~~~~e~ 316 (334)
- + +..+-.-+.++-..++|- +++-+++ ..++.|.+.+..+...+. +.+. -..|+.+++
T Consensus 78 g~~~~~~d~r~~L~~~~~~~v~~~~Pk--~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna~~yGvPQ~R~R 155 (335)
T PF00145_consen 78 GKRKGFDDPRNSLFFEFLRIVKELKPK--YFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLNAADYGVPQNRER 155 (335)
T ss_dssp STHHCCCCHTTSHHHHHHHHHHHHS-S--EEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGTSSBE-EE
T ss_pred ccccccccccchhhHHHHHHHhhccce--EEEecccceeeccccccccccccccccccceeehhccccHhhCCCCCceee
Confidence 1 1 122444555566667894 3443432 234555555555555443 2222 224666666
Q ss_pred EEE-EEe
Q 019879 317 ILV-AVK 322 (334)
Q Consensus 317 ~l~-~~K 322 (334)
+++ +.+
T Consensus 156 ~fivg~r 162 (335)
T PF00145_consen 156 VFIVGIR 162 (335)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 544 444
No 281
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=80.54 E-value=2.1 Score=34.97 Aligned_cols=83 Identities=24% Similarity=0.314 Sum_probs=55.1
Q ss_pred cccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhh----hhcccC-CCCC-CccceEEechhhccccCcCCHH
Q 019879 190 GFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DWCEAF-STYP-RTYDLIHAHGLFSLYKDKCNIE 263 (334)
Q Consensus 190 G~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~~e~l-~~yp-~sFDlVha~~vfs~~~~~c~~~ 263 (334)
|.|.++..+++.-. .+|+.++.++.-++.+.+-|...... ++.+.+ ...+ +.+|+|+=. . .-.
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~-----~----g~~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDC-----V----GSG 69 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEES-----S----SSH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEe-----c----CcH
Confidence 46788888876422 57899999988899988877422211 111111 1133 579988532 1 125
Q ss_pred HHHHHHHHhhcCCeEEEEEe
Q 019879 264 DILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 264 ~~L~Em~RVLRPGG~lii~D 283 (334)
..+.+...+|||||.+++.-
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEES
T ss_pred HHHHHHHHHhccCCEEEEEE
Confidence 78999999999999999864
No 282
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=79.90 E-value=2.4 Score=40.17 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=35.4
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCcc----------------chhhhhcccCCC
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI----------------GIYHDWCEAFST 239 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli----------------~~~~d~~e~l~~ 239 (334)
++.+...+|||.=||.|.=+.-|+..|. .|++++.|+ .+....+.||- ..++.....+..
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~G~---~V~~lErsp-via~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~ 146 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASLGC---KVTGLERSP-VIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR 146 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--H-HHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC
T ss_pred CCCCCCCEEEECCCcchHHHHHHHccCC---eEEEEECCH-HHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh
Confidence 4554445999999999987666665553 689999884 44443333331 111211111122
Q ss_pred CC-CccceEEechhhccc
Q 019879 240 YP-RTYDLIHAHGLFSLY 256 (334)
Q Consensus 240 yp-~sFDlVha~~vfs~~ 256 (334)
.+ ++||+|...-+|.+-
T Consensus 147 ~~~~s~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 147 QPDNSFDVVYFDPMFPER 164 (234)
T ss_dssp CHSS--SEEEE--S----
T ss_pred hcCCCCCEEEECCCCCCc
Confidence 34 899999999999873
No 283
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=79.40 E-value=9.7 Score=34.09 Aligned_cols=93 Identities=22% Similarity=0.207 Sum_probs=56.0
Q ss_pred CCceEeeecccc-cHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccchhhh----hcccC-CCCCCccceEEechh
Q 019879 180 RYRNIMDMNAGF-GGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIYHD----WCEAF-STYPRTYDLIHAHGL 252 (334)
Q Consensus 180 ~~r~VLD~GCG~-G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d----~~e~l-~~yp~sFDlVha~~v 252 (334)
...+||..|+|. |..++.++.. + .+|+.++.+++..+.+.+.|....+.. ..+.+ ....+.||+|+..
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g---~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~-- 208 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAG---ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDA-- 208 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC---CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEEC--
Confidence 457899999985 5555556553 4 457777777777777666553211110 00100 0112679998754
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
.. -...+..+.+.|+++|.++....
T Consensus 209 ~~-------~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 209 VG-------GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CC-------CHHHHHHHHHhcccCCEEEEEcc
Confidence 11 11467778899999999987643
No 284
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=78.50 E-value=9.5 Score=35.96 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=53.6
Q ss_pred CCceEeeeccc-ccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCC-CCCCccceEEechhhccc
Q 019879 180 RYRNIMDMNAG-FGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-TYPRTYDLIHAHGLFSLY 256 (334)
Q Consensus 180 ~~r~VLD~GCG-~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~-~yp~sFDlVha~~vfs~~ 256 (334)
...+||-.||| .|..+..++.. |+ +|+.++.+.+.++.+.+.|.......-.+.+. .-.+.+|+++...
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~----- 233 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGF---ETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV----- 233 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC-----
Confidence 34688888886 56555555553 53 46666667677777766563111111000100 0124688886431
Q ss_pred cCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 257 KDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 257 ~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.-...+.++.|.|+++|.++..
T Consensus 234 ----~~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 234 ----VSGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred ----CcHHHHHHHHHhcccCCEEEEE
Confidence 1135778889999999998875
No 285
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=78.18 E-value=3.9 Score=38.56 Aligned_cols=99 Identities=22% Similarity=0.226 Sum_probs=61.1
Q ss_pred HHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhh
Q 019879 194 FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRIL 273 (334)
Q Consensus 194 faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVL 273 (334)
||.+|.+.+.. ..|++.|.++..+..+.+.|.+......-+.+ ..+|+|+-.- ....+..++.|+...|
T Consensus 1 ~A~aL~~~g~~-~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~----~~~Dlvvlav------P~~~~~~~l~~~~~~~ 69 (258)
T PF02153_consen 1 IALALRKAGPD-VEVYGYDRDPETLEAALELGIIDEASTDIEAV----EDADLVVLAV------PVSAIEDVLEEIAPYL 69 (258)
T ss_dssp HHHHHHHTTTT-SEEEEE-SSHHHHHHHHHTTSSSEEESHHHHG----GCCSEEEE-S-------HHHHHHHHHHHHCGS
T ss_pred ChHHHHhCCCC-eEEEEEeCCHHHHHHHHHCCCeeeccCCHhHh----cCCCEEEEcC------CHHHHHHHHHHhhhhc
Confidence 67888888632 46999999999999998988754321101111 4459886541 1223678999999999
Q ss_pred cCCeEEEEEe--ChhhHHHHHHHHh-cccceEE
Q 019879 274 RPEGAIIIRD--EVDEIIKVKKIVG-GMRWDTK 303 (334)
Q Consensus 274 RPGG~lii~D--~~~~~~~i~~~~~-~l~W~~~ 303 (334)
+||+.+.=.- ...+++.+++... ..++-..
T Consensus 70 ~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~ 102 (258)
T PF02153_consen 70 KPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGG 102 (258)
T ss_dssp -TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEE
T ss_pred CCCcEEEEeCCCCHHHHHHHHHhcCcccceeec
Confidence 9886554322 2346667777766 5555443
No 286
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=78.03 E-value=2 Score=45.01 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=32.9
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE 223 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~ 223 (334)
...+||+-||||.++.+|+.+- ..|.|+.++++.+.-|..
T Consensus 384 ~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~ 423 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEK 423 (534)
T ss_pred CcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhh
Confidence 3789999999999999998763 358899998888776654
No 287
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=77.61 E-value=12 Score=35.50 Aligned_cols=86 Identities=20% Similarity=0.145 Sum_probs=53.2
Q ss_pred Eeeecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCcCC
Q 019879 184 IMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCN 261 (334)
Q Consensus 184 VLD~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~ 261 (334)
|.=+|+|. |.++..|.+++. .|+..|.+++.++.+.++|.+.......+. -...|+|+.. .+ ...
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~---~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~----~~~aDlVila-----vp-~~~ 69 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGH---TVYGVSRRESTCERAIERGLVDEASTDLSL----LKDCDLVILA-----LP-IGL 69 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHCCCcccccCCHhH----hcCCCEEEEc-----CC-HHH
Confidence 44467774 457888887763 588889888888888888754322110010 1556888665 12 123
Q ss_pred HHHHHHHHHHhhcCCeEEEEEeC
Q 019879 262 IEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 262 ~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
...++.++...++|+- ++.|.
T Consensus 70 ~~~~~~~l~~~l~~~~--ii~d~ 90 (279)
T PRK07417 70 LLPPSEQLIPALPPEA--IVTDV 90 (279)
T ss_pred HHHHHHHHHHhCCCCc--EEEeC
Confidence 4567888888887763 33554
No 288
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=77.24 E-value=8.9 Score=40.27 Aligned_cols=97 Identities=20% Similarity=0.121 Sum_probs=61.3
Q ss_pred CCceEeeecccccHHHHHHHh--CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcc----------cCC---------
Q 019879 180 RYRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCE----------AFS--------- 238 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~--~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e----------~l~--------- 238 (334)
...+|+=+|||.=|+++.... .|. .|+.+|.+++.++.+.+-|..-...+-.+ .++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA---~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA---IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 468999999999887665433 353 58999999999998888774211000000 000
Q ss_pred C-CC--CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 239 T-YP--RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 239 ~-yp--~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. .+ +.+|+|+....... ...+.-+..|+-+.+||||.++.-
T Consensus 241 ~~~~~~~gaDVVIetag~pg---~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPG---KPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHhccCCCCEEEECCCCCc---ccCcchHHHHHHHhcCCCCEEEEE
Confidence 1 11 46899987632211 111223459999999999988764
No 289
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=76.69 E-value=1.9 Score=40.28 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=17.1
Q ss_pred eEeecccccCCceEEEecCC
Q 019879 15 MIEVDRVLRPGGYWVLSGPP 34 (334)
Q Consensus 15 l~E~dR~LrpgGy~v~s~pp 34 (334)
+-++-|+|+|||++|+|+.-
T Consensus 196 ~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 196 APDLARLLKPGGRLILSGIL 215 (250)
T ss_pred HHHHHHhcCCCcEEEEEECc
Confidence 44788999999999999873
No 290
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=75.19 E-value=26 Score=35.46 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=70.3
Q ss_pred CCCceEeeecccccHHHHHHHhCC--C-cEEEEEeccCChhhHH---HHHHcCc----cchhhhhcccCC--------CC
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSK--L-WVMNVVPTLADKNTLG---VIYERGL----IGIYHDWCEAFS--------TY 240 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~--v-~v~nVv~vD~s~~~L~---~a~~Rgl----i~~~~d~~e~l~--------~y 240 (334)
....+||||.|..|+=.+.|++.. . .-..|++-|.+..-+. ....|-. ..+-|+ ...++ .+
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~-~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHD-ASLFPNIYLKDGNDK 232 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeeccc-ceeccccccccCchh
Confidence 345899999999999888887731 1 1126888888765333 2223311 111121 11111 12
Q ss_pred C-CccceEEec------hhhcccc---Cc-------CC----HHHHHHHHHHhhcCCeEEEEEeCh-------hhHH-HH
Q 019879 241 P-RTYDLIHAH------GLFSLYK---DK-------CN----IEDILLEMDRILRPEGAIIIRDEV-------DEII-KV 291 (334)
Q Consensus 241 p-~sFDlVha~------~vfs~~~---~~-------c~----~~~~L~Em~RVLRPGG~lii~D~~-------~~~~-~i 291 (334)
. -.||=|.|. .++.+-. .+ -. -..+|.---|.|||||.++-++-. .++. .+
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L 312 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEAL 312 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHH
Confidence 3 468877653 1222110 00 00 126778888999999999999732 2333 45
Q ss_pred HHHHhcccceEEE
Q 019879 292 KKIVGGMRWDTKM 304 (334)
Q Consensus 292 ~~~~~~l~W~~~~ 304 (334)
+.....+.|....
T Consensus 313 ~~~~~~~~lv~~~ 325 (375)
T KOG2198|consen 313 QKVGGAVELVDVS 325 (375)
T ss_pred HHhcCcccceeec
Confidence 6666777776554
No 291
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=74.85 E-value=9 Score=37.73 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=57.4
Q ss_pred eEeeecccccHHHHH-HHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhh-----cccCCCC--CCccceEEechhh
Q 019879 183 NIMDMNAGFGGFAAA-IQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDW-----CEAFSTY--PRTYDLIHAHGLF 253 (334)
Q Consensus 183 ~VLD~GCG~G~faa~-L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~-----~e~l~~y--p~sFDlVha~~vf 253 (334)
+|+=+|||+=++.+. +++ .|. ..|+.+|.+++-|+.|++.+-.....+. .+..... ..-||+|+=..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga--~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~-- 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA--SVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV-- 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC--
Confidence 899999998665544 333 343 4688889999999999885432111110 0011112 24689885321
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
-...++.++-+++||||.+++-
T Consensus 247 -------G~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 247 -------GSPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred -------CCHHHHHHHHHHhcCCCEEEEE
Confidence 1245889999999999999885
No 292
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=74.59 E-value=11 Score=35.52 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=53.0
Q ss_pred CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhh----hcccCCCCCCccceEEechhh
Q 019879 180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHD----WCEAFSTYPRTYDLIHAHGLF 253 (334)
Q Consensus 180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d----~~e~l~~yp~sFDlVha~~vf 253 (334)
...+||-.|+|. |..++.+++ .++. .|+.++.+++....+.+.|....... ..+......+.+|+++... .
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~--~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~-~ 235 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGAS--RVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEAT-G 235 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECC-C
Confidence 347889988652 444444544 3432 25666666677777766664211110 0000011226789987531 0
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
-...+.++.|.|+|+|.++..
T Consensus 236 --------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 236 --------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred --------ChHHHHHHHHHHhcCCEEEEE
Confidence 135788999999999999875
No 293
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.82 E-value=14 Score=35.53 Aligned_cols=93 Identities=11% Similarity=0.101 Sum_probs=54.2
Q ss_pred CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhccc---CCCCCCccceEEechhhc
Q 019879 180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA---FSTYPRTYDLIHAHGLFS 254 (334)
Q Consensus 180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~---l~~yp~sFDlVha~~vfs 254 (334)
...+||=+|||. |.++..++. .++ ..|+.++.+++.++.+.+.|...++..--++ +....+.||+|+-.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~---- 242 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGA--AEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEV---- 242 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--cEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEEC----
Confidence 346888888752 223444444 343 2477888888888888887742221100011 11111348888543
Q ss_pred cccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 255 LYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
. .-...+.+..+.|||||.+++.-
T Consensus 243 -~----G~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 243 -S----GHPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred -C----CCHHHHHHHHHHhhcCCEEEEEc
Confidence 1 11356788899999999998753
No 294
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=73.76 E-value=7.6 Score=38.36 Aligned_cols=114 Identities=17% Similarity=0.209 Sum_probs=69.1
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHH--HHcCccchhhh------hcccCC---CCC-Cccce
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVI--YERGLIGIYHD------WCEAFS---TYP-RTYDL 246 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a--~~Rgli~~~~d------~~e~l~---~yp-~sFDl 246 (334)
.++++||=+|-|-|++...-+.+ ..+.|+.-.|+..+.++.. |-+.+...|.+ .+..+. -++ +.||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 46799999999999998877776 4567888888875554432 22222111100 011111 244 99999
Q ss_pred EEechhhccccCcCC--HHHHHHHHHHhhcCCeEEEEEeCh-----hhHHHHHHH
Q 019879 247 IHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKI 294 (334)
Q Consensus 247 Vha~~vfs~~~~~c~--~~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~~ 294 (334)
|+....=. ..+-|. .+.++.-+.+-|||||++++.... ++++.+.++
T Consensus 199 ii~dssdp-vgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~ 252 (337)
T KOG1562|consen 199 IITDSSDP-VGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSF 252 (337)
T ss_pred EEEecCCc-cchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHh
Confidence 98652110 111222 347888899999999999987542 345554444
No 295
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=73.12 E-value=3.3 Score=34.99 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=23.3
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccC
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLA 213 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~ 213 (334)
....-.|+|||.|-+.--|...|.. -.|+|+
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~---G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYP---GWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCC---cccccc
Confidence 4567999999999888777776643 366665
No 296
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=72.76 E-value=46 Score=32.47 Aligned_cols=100 Identities=14% Similarity=0.194 Sum_probs=62.4
Q ss_pred CceEeeecccccHHHHHHHh----CCCcEEEEEeccCChhhHHHHHH---c---Cc--cchhhhhcccCCCCC--Cccce
Q 019879 181 YRNIMDMNAGFGGFAAAIQS----SKLWVMNVVPTLADKNTLGVIYE---R---GL--IGIYHDWCEAFSTYP--RTYDL 246 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~----~~v~v~nVv~vD~s~~~L~~a~~---R---gl--i~~~~d~~e~l~~yp--~sFDl 246 (334)
..+.+|+|.|+-.=++.|.+ ++ ...-.+|+|+|...|..... + ++ .+...+.|.++...| ++==.
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~-~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRG-SLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcC-CcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 57899999999987777765 33 33568999999776653221 1 22 233334444443233 11113
Q ss_pred EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
++-.+.+..+. ..+-..+|..+.-.|+||-+|.+-
T Consensus 158 ~flGStlGN~t-p~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLT-PGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCC-hHHHHHHHHHHHhcCCCcceEEEe
Confidence 33344555553 223457889999999999999996
No 297
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=72.04 E-value=14 Score=34.98 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=53.3
Q ss_pred CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--hh-hcccCCCCCCccceEEechhhc
Q 019879 180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--HD-WCEAFSTYPRTYDLIHAHGLFS 254 (334)
Q Consensus 180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~d-~~e~l~~yp~sFDlVha~~vfs 254 (334)
...+||-.|||. |.++..+++ .|+ ..|+.++.+++..+.+.+.|....+ ++ .-..+....+.||+|+....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~--~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g-- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA--AEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG-- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC--
Confidence 457888888764 445555554 343 1366667776777766665531111 10 00011111245898865311
Q ss_pred cccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 255 LYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
-...+.++.+.|+++|.++..
T Consensus 241 -------~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 241 -------APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred -------CHHHHHHHHHHHhcCCEEEEE
Confidence 134678999999999999864
No 298
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=71.57 E-value=26 Score=33.46 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=60.0
Q ss_pred CCceEeeeccccc-HHHHHHHhCCCcEEEEEeccCChhhHHHH----HHcCcc--chhhhhcccCCCCC-CccceEEech
Q 019879 180 RYRNIMDMNAGFG-GFAAAIQSSKLWVMNVVPTLADKNTLGVI----YERGLI--GIYHDWCEAFSTYP-RTYDLIHAHG 251 (334)
Q Consensus 180 ~~r~VLD~GCG~G-~faa~L~~~~v~v~nVv~vD~s~~~L~~a----~~Rgli--~~~~d~~e~l~~yp-~sFDlVha~~ 251 (334)
..++||=+|=.-- ++|.+|...+ .+|+=+|+.+..++.+ .+.|+. ...+|...++|..= ++||++++.-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~---~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLP---KRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT-----SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE--
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCC---CeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC
Confidence 4589999986554 3666665554 3678888888888754 445652 34667777776543 9999999872
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCCe---EEEEEeCh---hhHHHHHHHHhcccceEE
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPEG---AIIIRDEV---DEIIKVKKIVGGMRWDTK 303 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPGG---~lii~D~~---~~~~~i~~~~~~l~W~~~ 303 (334)
..+ ...+.-++.---..||..| +|-++... +.+.++++.+..|.--++
T Consensus 121 PyT----~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 121 PYT----PEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp -SS----HHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEE
T ss_pred CCC----HHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHH
Confidence 221 0123445555556777555 44444432 355678888888887665
No 299
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=71.26 E-value=4.2 Score=41.07 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=36.7
Q ss_pred CC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 240 YP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 240 yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
.| ++||.++-+..+.... .......+.++.|.+||||.++++...
T Consensus 291 ~~~~s~~~~vL~D~~Dwm~-~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHMDWMD-PEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CCCCCeeEEEecchhhhCC-HHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 44 9999998877776543 356789999999999999999999753
No 300
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.19 E-value=17 Score=36.32 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=63.1
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchh---h-----hhcccC-CCCC-CccceEEe
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIY---H-----DWCEAF-STYP-RTYDLIHA 249 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~---~-----d~~e~l-~~yp-~sFDlVha 249 (334)
...+||=+|||+=++.+-|..+.+-...|+.+|.+++.|+.|++-|...+. + +..+-. ..+. ..||+.+-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~d 248 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFD 248 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEE
Confidence 348999999999888888877654456899999999999999987752211 1 000000 0133 44777653
Q ss_pred chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
-. -.+..+.-.--.||+||.+++..
T Consensus 249 Cs---------G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 249 CS---------GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred cc---------CchHHHHHHHHHhccCCEEEEec
Confidence 21 23455555567899999988875
No 301
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=71.13 E-value=12 Score=36.26 Aligned_cols=106 Identities=19% Similarity=0.170 Sum_probs=68.8
Q ss_pred ceEeeeccc--ccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhccccC
Q 019879 182 RNIMDMNAG--FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKD 258 (334)
Q Consensus 182 r~VLD~GCG--~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~ 258 (334)
.+|.=+|.| -|.|+..|.+++ +...+++.|.+.+.+..+.+.|++-.+. ++...-. ...|+|+-+ ..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g-~~v~i~g~d~~~~~~~~a~~lgv~d~~~---~~~~~~~~~~aD~Viva------vP 73 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAG-LVVRIIGRDRSAATLKAALELGVIDELT---VAGLAEAAAEADLVIVA------VP 73 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcC-CeEEEEeecCcHHHHHHHhhcCcccccc---cchhhhhcccCCEEEEe------cc
Confidence 355556655 355788888877 4568999999988888888888654321 1111122 678998765 11
Q ss_pred cCCHHHHHHHHHHhhcCCeEEEEEeC----hhhHHHHHHHHhccc
Q 019879 259 KCNIEDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGGMR 299 (334)
Q Consensus 259 ~c~~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~~~~~l~ 299 (334)
-.....++.|+..-|+||-.+ .|. ..+++.+++......
T Consensus 74 i~~~~~~l~~l~~~l~~g~iv--~Dv~S~K~~v~~a~~~~~~~~~ 116 (279)
T COG0287 74 IEATEEVLKELAPHLKKGAIV--TDVGSVKSSVVEAMEKYLPGDV 116 (279)
T ss_pred HHHHHHHHHHhcccCCCCCEE--EecccccHHHHHHHHHhccCCC
Confidence 234678999999999998654 343 335666666664544
No 302
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=70.19 E-value=43 Score=32.75 Aligned_cols=135 Identities=14% Similarity=0.209 Sum_probs=71.8
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCC--CCC-ccceEEec---hhhc
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFST--YPR-TYDLIHAH---GLFS 254 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~--yp~-sFDlVha~---~vfs 254 (334)
.+++|+=||.|++...+.+.|+.+ +..+|+.+..+..-..... ....+.....+.. ++. .+|++++. .-||
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~--~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEI--VFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeE--EEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchh
Confidence 589999999999999999888654 6777887666554222211 1111111111111 122 88999876 2344
Q ss_pred cccC-------cCCHHHHHHHHHHhhcCCeEEEEEeChh--------hHHHHHHHHhc----ccceEEEecCCCCCCCCc
Q 019879 255 LYKD-------KCNIEDILLEMDRILRPEGAIIIRDEVD--------EIIKVKKIVGG----MRWDTKMVDHEDGPLVPE 315 (334)
Q Consensus 255 ~~~~-------~c~~~~~L~Em~RVLRPGG~lii~D~~~--------~~~~i~~~~~~----l~W~~~~~~~~~~~~~~e 315 (334)
..-. +-.+-.-+.++-..++| .+++-+++. .++.|.+.+.. +.|.+-....-.-|+.+|
T Consensus 82 ~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~Re 159 (328)
T COG0270 82 IAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRE 159 (328)
T ss_pred hcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCcc
Confidence 3211 11222444555556678 455544431 22333333333 445444332333477788
Q ss_pred eEEEE
Q 019879 316 KILVA 320 (334)
Q Consensus 316 ~~l~~ 320 (334)
++++.
T Consensus 160 Rvfii 164 (328)
T COG0270 160 RVFIV 164 (328)
T ss_pred EEEEE
Confidence 88776
No 303
>PRK10742 putative methyltransferase; Provisional
Probab=69.87 E-value=13 Score=35.52 Aligned_cols=91 Identities=16% Similarity=0.217 Sum_probs=54.4
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCcc----------------chhhhhc-ccCC
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI----------------GIYHDWC-EAFS 238 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli----------------~~~~d~~-e~l~ 238 (334)
++.+.--+|||+=||+|..+..++..|. .|+.++-++....+.. .|+. ..++... +-+.
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~G~---~V~~vEr~p~vaalL~-dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~ 159 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLD-DGLARGYADAEIGGWLQERLQLIHASSLTALT 159 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHcCC---EEEEEECCHHHHHHHH-HHHHHhhhccccchhhhceEEEEeCcHHHHHh
Confidence 3443333899999999999999999885 4899998865433221 2221 1111111 1122
Q ss_pred CCCCccceEEechhhccccCcCCHHHHHHHHHHhhc
Q 019879 239 TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILR 274 (334)
Q Consensus 239 ~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLR 274 (334)
..+.+||+|+..=.|.|-.. . ..+.+|| |+++
T Consensus 160 ~~~~~fDVVYlDPMfp~~~k-s--a~vkk~m-r~~~ 191 (250)
T PRK10742 160 DITPRPQVVYLDPMFPHKQK-S--ALVKKEM-RVFQ 191 (250)
T ss_pred hCCCCCcEEEECCCCCCCcc-c--cchhhhH-HHHH
Confidence 23468999999988887321 1 2355566 4443
No 304
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=69.87 E-value=1.8 Score=40.84 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=17.9
Q ss_pred eEeecccccCCceEEEecCCC
Q 019879 15 MIEVDRVLRPGGYWVLSGPPI 35 (334)
Q Consensus 15 l~E~dR~LrpgGy~v~s~pp~ 35 (334)
+-|+.|+|+|||+|+...|..
T Consensus 164 ~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 164 AEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred HHHHHhhccCCCEEEEEeCCC
Confidence 468999999999999987753
No 305
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=67.25 E-value=1.9 Score=37.57 Aligned_cols=19 Identities=42% Similarity=0.559 Sum_probs=15.7
Q ss_pred eeeEeecccccCCceEEEe
Q 019879 13 RYMIEVDRVLRPGGYWVLS 31 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~s 31 (334)
..|-|+-|+|+|||+++..
T Consensus 62 ~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 62 RAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred HHHHHHHHHcCcCeEEEEE
Confidence 3466999999999999853
No 306
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=67.02 E-value=12 Score=35.44 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=53.2
Q ss_pred CceEeeecccc-cHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccchh--h--hhcccCCC-CC-CccceEEechh
Q 019879 181 YRNIMDMNAGF-GGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DWCEAFST-YP-RTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG~-G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~~e~l~~-yp-~sFDlVha~~v 252 (334)
..+||-.|+|. |.++..|++. ++ +|+.+..+++..+.+.+.|....+ + ++.+.+.. .+ +.+|+++...
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~g~---~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~- 235 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKARGA---RVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDAT- 235 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECC-
Confidence 46888888763 5566666663 53 456665566677766665531111 1 11122211 23 5689886531
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.-...+.++.+.|+++|.++..
T Consensus 236 --------g~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 236 --------GNPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred --------CCHHHHHHHHHHHhcCCEEEEE
Confidence 0135788999999999998864
No 307
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=66.25 E-value=22 Score=37.99 Aligned_cols=59 Identities=10% Similarity=0.127 Sum_probs=35.6
Q ss_pred CCccceEEechhhccccCcCC-HHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEE
Q 019879 241 PRTYDLIHAHGLFSLYKDKCN-IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 303 (334)
Q Consensus 241 p~sFDlVha~~vfs~~~~~c~-~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~ 303 (334)
+..||+++.. -|+=..+..- -+.+|.+|.|.++|||.|.-......+ ++-+....+++.
T Consensus 164 ~~~~d~~~lD-~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a~~v---r~~l~~~GF~v~ 223 (662)
T PRK01747 164 DARADAWFLD-GFAPAKNPDMWSPNLFNALARLARPGATLATFTSAGFV---RRGLQEAGFTVR 223 (662)
T ss_pred cccccEEEeC-CCCCccChhhccHHHHHHHHHHhCCCCEEEEeehHHHH---HHHHHHcCCeee
Confidence 3568888765 2331111111 158999999999999999976654432 333444445444
No 308
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=66.24 E-value=13 Score=36.06 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=59.8
Q ss_pred CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChh----hHHHHHHcCc-cchhhhhcccCCCCC-------Cccce
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKN----TLGVIYERGL-IGIYHDWCEAFSTYP-------RTYDL 246 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~----~L~~a~~Rgl-i~~~~d~~e~l~~yp-------~sFDl 246 (334)
...+||=+|++.|+...+..+- +-. --|.+++.|+. .+..|..|-. +.+.. +. .+| .-.|+
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpe-G~VYAVEfs~rsGRdL~nmAkkRtNiiPIiE----DA-rhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPE-GCVYAVEFSHRSGRDLINMAKKRTNIIPIIE----DA-RHPAKYRMLVGMVDV 229 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCC-ceEEEEEecccchHHHHHHhhccCCceeeec----cC-CCchheeeeeeeEEE
Confidence 3479999999999987777662 111 12666766642 4556666743 34443 32 223 45677
Q ss_pred EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
|++. +.+.....-+.+-..--||+||-|+|+-
T Consensus 230 IFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 230 IFAD-----VAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred Eecc-----CCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 7664 3444445667778888999999999984
No 309
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=65.18 E-value=11 Score=36.84 Aligned_cols=57 Identities=18% Similarity=0.340 Sum_probs=40.2
Q ss_pred CCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC-----------hhhHHHHHHHHhcccceEE
Q 019879 239 TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-----------VDEIIKVKKIVGGMRWDTK 303 (334)
Q Consensus 239 ~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~-----------~~~~~~i~~~~~~l~W~~~ 303 (334)
-|.+-||+|+.++-..|+.. .|+.++++|||.|++-.. ....++|.++++.-.|+..
T Consensus 218 ky~~~Fd~ifvs~s~vh~L~--------p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 218 KYQNFFDLIFVSCSMVHFLK--------PELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred hhcCCCCEEEEhhhhHhhcc--------hHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 36689999987644433221 158899999999999653 1356788888888887643
No 310
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=64.46 E-value=28 Score=33.37 Aligned_cols=91 Identities=16% Similarity=0.107 Sum_probs=54.5
Q ss_pred CceEeeeccccc--HHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccC
Q 019879 181 YRNIMDMNAGFG--GFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 258 (334)
Q Consensus 181 ~r~VLD~GCG~G--~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~ 258 (334)
..+|.=+|+|.- .++..|.+.+. ...|+..|.+++.++.+.+.|...... ......-...|+|+..- +
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~-~~~V~~~dr~~~~~~~a~~~g~~~~~~---~~~~~~~~~aDvViiav-----p- 75 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGL-AGEIVGADRSAETRARARELGLGDRVT---TSAAEAVKGADLVILCV-----P- 75 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhCCCCceec---CCHHHHhcCCCEEEECC-----C-
Confidence 357888898863 35666666653 236788888877787777776432111 11000115679887651 1
Q ss_pred cCCHHHHHHHHHHhhcCCeEEEE
Q 019879 259 KCNIEDILLEMDRILRPEGAIII 281 (334)
Q Consensus 259 ~c~~~~~L~Em~RVLRPGG~lii 281 (334)
......++.++...++||..++.
T Consensus 76 ~~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 76 VGASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEe
Confidence 11245677788778899886543
No 311
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=64.42 E-value=33 Score=34.68 Aligned_cols=92 Identities=13% Similarity=0.254 Sum_probs=56.9
Q ss_pred eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHH-----HHHcCccchhhhhcccCCCCCCccceEEechhhcccc
Q 019879 183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV-----IYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 257 (334)
Q Consensus 183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~-----a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~ 257 (334)
+||=+|=.+|.++..|...++.. + .|. -+.+. +...|+......+....+++|+.+|+|... ++
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~--~--~ds--~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~d~vl~~-----~P 115 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYS--I--GDS--YISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIK-----VP 115 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCe--e--ehH--HHHHHHHHHHHHHcCCCcccceeecccccccCCCCEEEEE-----eC
Confidence 79999999999999999755421 2 232 12222 222344221111112234567779998664 22
Q ss_pred -CcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 258 -DKCNIEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 258 -~~c~~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
....++..|..+.++|.||+.++.....
T Consensus 116 K~~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 116 KTLALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 2234678888999999999998877654
No 312
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=64.27 E-value=3.5 Score=39.53 Aligned_cols=19 Identities=37% Similarity=0.842 Sum_probs=16.3
Q ss_pred eEeecccccCCceEEEecC
Q 019879 15 MIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 15 l~E~dR~LrpgGy~v~s~p 33 (334)
+-++-|+|+|||++++|+.
T Consensus 242 l~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 242 YPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred HHHHHHHcCCCcEEEEEeC
Confidence 3456799999999999997
No 313
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=63.71 E-value=15 Score=34.27 Aligned_cols=111 Identities=16% Similarity=0.085 Sum_probs=51.1
Q ss_pred HHHHHHHhhcCCCCCceEeeecccccHHHHHHHh----CCCcEEEEEeccCChhhHH-HHHHc----Cccchhhhhccc-
Q 019879 167 NAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQS----SKLWVMNVVPTLADKNTLG-VIYER----GLIGIYHDWCEA- 236 (334)
Q Consensus 167 ~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~----~~v~v~nVv~vD~s~~~L~-~a~~R----gli~~~~d~~e~- 236 (334)
..|.+++-.++ ++.|+.+|.-.||-+..+++ -+. -..|+++|+...-.. .+.+. .-|......+.+
T Consensus 22 ~~~qeli~~~k---Pd~IIE~Gi~~GGSli~~A~ml~~~~~-~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 22 VAYQELIWELK---PDLIIETGIAHGGSLIFWASMLELLGG-KGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDP 97 (206)
T ss_dssp HHHHHHHHHH-----SEEEEE--TTSHHHHHHHHHHHHTT----EEEEEES-GTT--S-GGGG----TTEEEEES-SSST
T ss_pred HHHHHHHHHhC---CCeEEEEecCCCchHHHHHHHHHHhCC-CceEEEEeCCcchhchHHHhhccccCceEEEECCCCCH
Confidence 34565554455 47999999999996654433 111 146899999533221 12222 112222211111
Q ss_pred -----CCCC--CCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 237 -----FSTY--PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 237 -----l~~y--p~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
.-.. +..-.+|+-.. +|. .++....|.-...+|.||+++|+-|+.
T Consensus 98 ~~~~~v~~~~~~~~~vlVilDs--~H~--~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 98 EIVDQVRELASPPHPVLVILDS--SHT--HEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp HHHHTSGSS----SSEEEEESS--------SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred HHHHHHHHhhccCCceEEEECC--Ccc--HHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 0001 12333554331 121 245667777789999999999998853
No 314
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=63.68 E-value=51 Score=31.67 Aligned_cols=88 Identities=10% Similarity=-0.015 Sum_probs=53.2
Q ss_pred CCceEeeecccccH-HHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhcccc
Q 019879 180 RYRNIMDMNAGFGG-FAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 257 (334)
Q Consensus 180 ~~r~VLD~GCG~G~-faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~ 257 (334)
...+||=.|||.-+ ++..+++ .|+ +|+.++.+++-++.+++.|....+.. .. .-++.||+++-. .
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~---~vi~~~~~~~~~~~a~~~Ga~~vi~~--~~--~~~~~~d~~i~~---~--- 231 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGA---TVHVMTRGAAARRLALALGAASAGGA--YD--TPPEPLDAAILF---A--- 231 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCC---eEEEEeCChHHHHHHHHhCCceeccc--cc--cCcccceEEEEC---C---
Confidence 34789989976433 4444444 353 46777777777888888774222110 01 112457865421 1
Q ss_pred CcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 258 DKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 258 ~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
. ....+.+..+.|||||.+++.-
T Consensus 232 --~-~~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 232 --P-AGGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred --C-cHHHHHHHHHhhCCCcEEEEEe
Confidence 0 1347888889999999998853
No 315
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=63.17 E-value=1.4e+02 Score=28.33 Aligned_cols=134 Identities=14% Similarity=0.135 Sum_probs=85.1
Q ss_pred eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchhh-hhcccCCCCC--CccceEEechhhcc
Q 019879 183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYH-DWCEAFSTYP--RTYDLIHAHGLFSL 255 (334)
Q Consensus 183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~-d~~e~l~~yp--~sFDlVha~~vfs~ 255 (334)
++.|+||--|.+..+|.+.+. +-.++..|.++.-++.|... ++..... .....|+++. ..+|+|+...+=.
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG- 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG- 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH-
Confidence 499999999999999998753 24578888887777755432 3321111 1123456665 4799887653221
Q ss_pred ccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEecCCCCCCCCceEEEEEec
Q 019879 256 YKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 323 (334)
Q Consensus 256 ~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~ 323 (334)
-.+..+|.|-...|+-==.+++.-.... ..+++.+....|+.+.-.--.+...=-.||++.|.
T Consensus 97 ----~lI~~ILee~~~~l~~~~rlILQPn~~~-~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~~ 159 (226)
T COG2384 97 ----TLIREILEEGKEKLKGVERLILQPNIHT-YELREWLSANSYEIKAETILEEDGKIYEILVVEKS 159 (226)
T ss_pred ----HHHHHHHHHhhhhhcCcceEEECCCCCH-HHHHHHHHhCCceeeeeeeecccCeEEEEEEEecC
Confidence 2367888888888875557777765542 46788899999987642211110012347777776
No 316
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=63.11 E-value=36 Score=31.15 Aligned_cols=91 Identities=16% Similarity=0.096 Sum_probs=52.2
Q ss_pred CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhcccc
Q 019879 180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 257 (334)
Q Consensus 180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~ 257 (334)
...+||=.|||. |..+..+++ .++. .|+.++.+++.+..+.+.|.........+.. .-.+.+|+|+-..
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~--~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~d~vl~~~------ 167 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAR--EVVGVDPDAARRELAEALGPADPVAADTADE-IGGRGADVVIEAS------ 167 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC--cEEEECCCHHHHHHHHHcCCCccccccchhh-hcCCCCCEEEEcc------
Confidence 346777778754 444444444 3432 1677777777777777776211000001111 1125688886421
Q ss_pred CcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 258 DKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 258 ~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.....+.+..+.|+++|.++..
T Consensus 168 ---~~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 168 ---GSPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred ---CChHHHHHHHHHhcCCcEEEEE
Confidence 1135778899999999999865
No 317
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=62.81 E-value=54 Score=34.12 Aligned_cols=104 Identities=21% Similarity=0.255 Sum_probs=59.6
Q ss_pred cCCCCCceEeeecccccHHHHHHHh---CCCcEEEEEeccCChhhHHHHHHc----Cccc---hhhhhcccC--CCC---
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQS---SKLWVMNVVPTLADKNTLGVIYER----GLIG---IYHDWCEAF--STY--- 240 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~---~~v~v~nVv~vD~s~~~L~~a~~R----gli~---~~~d~~e~l--~~y--- 240 (334)
+......+|.|-.||+|+|...-.+ +..--..+.|.+....+...+.-. |... ..+. ..+ |.+
T Consensus 182 l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~--dtl~~~~~~~~ 259 (489)
T COG0286 182 LDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG--DTLSNPKHDDK 259 (489)
T ss_pred cCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc--ccccCCccccc
Confidence 3433445899999999997544332 111014578888877777765433 2211 1111 011 112
Q ss_pred -C-CccceEEechhhcc---------------------ccCcCC-HHHHHHHHHHhhcCCeEEEE
Q 019879 241 -P-RTYDLIHAHGLFSL---------------------YKDKCN-IEDILLEMDRILRPEGAIII 281 (334)
Q Consensus 241 -p-~sFDlVha~~vfs~---------------------~~~~c~-~~~~L~Em~RVLRPGG~lii 281 (334)
. ..||.|+++-=|+- ...... -...+++|.+.|+|||...+
T Consensus 260 ~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 260 DDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred CCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 3 67999998854430 000111 14789999999999986544
No 318
>PRK08507 prephenate dehydrogenase; Validated
Probab=62.39 E-value=28 Score=32.78 Aligned_cols=84 Identities=21% Similarity=0.260 Sum_probs=49.9
Q ss_pred Eeeecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCcCC
Q 019879 184 IMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCN 261 (334)
Q Consensus 184 VLD~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~ 261 (334)
|.=+|+|. |.++..|.+.+. ...|++.|.+++.++.+.+.|.+....+..+ + .+ .|+|+.. .+ ...
T Consensus 3 I~iIG~G~mG~sla~~l~~~g~-~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~-~---~~-aD~Vila-----vp-~~~ 70 (275)
T PRK08507 3 IGIIGLGLMGGSLGLALKEKGL-ISKVYGYDHNELHLKKALELGLVDEIVSFEE-L---KK-CDVIFLA-----IP-VDA 70 (275)
T ss_pred EEEEccCHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHCCCCcccCCHHH-H---hc-CCEEEEe-----Cc-HHH
Confidence 44467665 446777777663 2368888888877777777775422111111 1 13 7888764 22 234
Q ss_pred HHHHHHHHHHhhcCCeEEE
Q 019879 262 IEDILLEMDRILRPEGAII 280 (334)
Q Consensus 262 ~~~~L~Em~RVLRPGG~li 280 (334)
+..++.++.. ++||..++
T Consensus 71 ~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 71 IIEILPKLLD-IKENTTII 88 (275)
T ss_pred HHHHHHHHhc-cCCCCEEE
Confidence 5677788877 77776443
No 319
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=61.96 E-value=32 Score=34.52 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=62.0
Q ss_pred hcCCCCCceEeeecccccH----HHHHHHhC--CCcEEEEEeccC----ChhhHHH--------HHHcCccchhhh-hc-
Q 019879 175 LLDSGRYRNIMDMNAGFGG----FAAAIQSS--KLWVMNVVPTLA----DKNTLGV--------IYERGLIGIYHD-WC- 234 (334)
Q Consensus 175 ~l~~~~~r~VLD~GCG~G~----faa~L~~~--~v~v~nVv~vD~----s~~~L~~--------a~~Rgli~~~~d-~~- 234 (334)
.+...+--+|+|+|-|.|. +..+|+.+ +.--.-||+++. +...++. |..-|+.-.++. ..
T Consensus 105 A~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~ 184 (374)
T PF03514_consen 105 AFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVE 184 (374)
T ss_pred HhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccC
Confidence 3444455789999999996 66677665 234578899988 4444543 333354211111 01
Q ss_pred --ccC-----CCCCCccceEEechhhccccCcC----CHHHHHHHHHHhhcCCeEEEEE
Q 019879 235 --EAF-----STYPRTYDLIHAHGLFSLYKDKC----NIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 235 --e~l-----~~yp~sFDlVha~~vfs~~~~~c----~~~~~L~Em~RVLRPGG~lii~ 282 (334)
+.+ ..-++-.=+|.|..-+||+.+.. +..+.+...-|-|+|.-.++.-
T Consensus 185 ~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 185 SLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred chhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 111 11122222455666677775221 2456777888999999666554
No 320
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=60.50 E-value=41 Score=26.85 Aligned_cols=90 Identities=21% Similarity=0.229 Sum_probs=53.4
Q ss_pred ccccHHHHHHHhC---CCcEEEEEeccCChhhHHHHHHcCccchhhhhccc--CCCCC-CccceEEechhhccccCcCCH
Q 019879 189 AGFGGFAAAIQSS---KLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA--FSTYP-RTYDLIHAHGLFSLYKDKCNI 262 (334)
Q Consensus 189 CG~G~faa~L~~~---~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~--l~~yp-~sFDlVha~~vfs~~~~~c~~ 262 (334)
||+|.++..+++. +. .+|+-+|.+++..+.+.++|....+.|-.+. +--.. ...|.|++. ..+ ...
T Consensus 4 ~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~-----~~~-d~~ 75 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGG--IDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVIL-----TDD-DEE 75 (116)
T ss_dssp ES-SHHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEE-----SSS-HHH
T ss_pred EcCCHHHHHHHHHHHhCC--CEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEc-----cCC-HHH
Confidence 6778777666541 21 4689999998888888888854333332211 11123 667777664 111 123
Q ss_pred HHHHHHHHHhhcCCeEEEEEeChh
Q 019879 263 EDILLEMDRILRPEGAIIIRDEVD 286 (334)
Q Consensus 263 ~~~L~Em~RVLRPGG~lii~D~~~ 286 (334)
...+....|-+-|...++.+-...
T Consensus 76 n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 76 NLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp HHHHHHHHHHHTTTSEEEEEESSH
T ss_pred HHHHHHHHHHHCCCCeEEEEECCH
Confidence 345566678888888888876544
No 321
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=59.89 E-value=30 Score=33.35 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=52.6
Q ss_pred CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh-------hhcccCC--CCCCccc---
Q 019879 180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH-------DWCEAFS--TYPRTYD--- 245 (334)
Q Consensus 180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~-------d~~e~l~--~yp~sFD--- 245 (334)
...+||=.|||. |.++..++. .++ +|+.++.+++.++.+.+.|....+. ++.+.+. +-.+-+|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~---~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~ 242 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGA---AVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTG 242 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC---eEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCc
Confidence 357899999855 444455544 353 5777888888888887776421110 1111111 1112344
Q ss_pred -eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 246 -LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 246 -lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
+|+-. . .-...+....+.||+||.+++..
T Consensus 243 d~v~d~-----~----g~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 243 WKIFEC-----S----GSKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CEEEEC-----C----CChHHHHHHHHHHhcCCeEEEEC
Confidence 44311 0 11356777889999999998854
No 322
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=59.30 E-value=24 Score=36.17 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=28.6
Q ss_pred CCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhh
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNT 217 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~ 217 (334)
..+..|.|+|+|-|.++..|.=+ + ..|.++|.|..+
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~---lsV~aIegsq~~ 188 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYG---LSVKAIEGSQRL 188 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccC---ceEEEeccchHH
Confidence 45689999999999999888653 4 468899988543
No 323
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=58.20 E-value=24 Score=33.07 Aligned_cols=42 Identities=19% Similarity=0.472 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEE
Q 019879 262 IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 303 (334)
Q Consensus 262 ~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~ 303 (334)
....+.|+.|+|+++|.+++...-.....+...++.+.|...
T Consensus 78 ~~~~~~~~~rvl~~~~~~~v~~~~~~~~~~~~~~~~~gf~~~ 119 (302)
T COG0863 78 LLQWLAEQKRVLKPGGSLYVIDPFSNLARIEDIAKKLGFEIL 119 (302)
T ss_pred HHHHHHHhhheecCCCEEEEECCchhhhHHHHHHHhCCCeEe
Confidence 578999999999999999999887766777777777777765
No 324
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=58.08 E-value=41 Score=34.45 Aligned_cols=86 Identities=16% Similarity=0.026 Sum_probs=53.4
Q ss_pred CCceEeeecccccHHHHHH--HhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhcccc
Q 019879 180 RYRNIMDMNAGFGGFAAAI--QSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 257 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L--~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~ 257 (334)
..++|+=+|||.=|.+.+. +..|+ +|+.+|.++.-+..+.+-|...... -+.+ ..+|+|+...
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga---~ViV~d~d~~R~~~A~~~G~~~~~~--~e~v----~~aDVVI~at------ 265 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA---RVIVTEVDPICALQAAMEGYEVMTM--EEAV----KEGDIFVTTT------ 265 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEECChhhHHHHHhcCCEEccH--HHHH----cCCCEEEECC------
Confidence 3579999999986544333 33454 5777888777777777767521111 1111 4579987641
Q ss_pred CcCCHHHHHH-HHHHhhcCCeEEEEEe
Q 019879 258 DKCNIEDILL-EMDRILRPEGAIIIRD 283 (334)
Q Consensus 258 ~~c~~~~~L~-Em~RVLRPGG~lii~D 283 (334)
.. ..++. +..+.+||||.++..-
T Consensus 266 --G~-~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 266 --GN-KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred --CC-HHHHHHHHHhcCCCCcEEEEeC
Confidence 11 23444 5689999999997754
No 325
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=58.08 E-value=2.4 Score=40.00 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=16.8
Q ss_pred ceeeEeecccccCCceEEEe
Q 019879 12 GRYMIEVDRVLRPGGYWVLS 31 (334)
Q Consensus 12 g~~l~E~dR~LrpgGy~v~s 31 (334)
-.+|-|+-|+|||||+++.+
T Consensus 162 ~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 162 LKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred HHHHHHHHHHcCcCcEEEEE
Confidence 34567999999999999886
No 326
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=57.33 E-value=1.8 Score=39.97 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=21.4
Q ss_pred cCCceeeEeecccccCCceEEEecCC
Q 019879 9 FADGRYMIEVDRVLRPGGYWVLSGPP 34 (334)
Q Consensus 9 ~~~g~~l~E~dR~LrpgGy~v~s~pp 34 (334)
.+-..+|-|+-|+|+|||++++|.+.
T Consensus 117 ~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 117 GNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 44456788999999999999999764
No 327
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=57.10 E-value=15 Score=37.01 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=57.9
Q ss_pred CceEeeecccccHHHHHH-Hh-CCCcEEEEEeccCChhhHHHHHHc----Cccc----hhhhhcccCCC-CCCccceEEe
Q 019879 181 YRNIMDMNAGFGGFAAAI-QS-SKLWVMNVVPTLADKNTLGVIYER----GLIG----IYHDWCEAFST-YPRTYDLIHA 249 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L-~~-~~v~v~nVv~vD~s~~~L~~a~~R----gli~----~~~d~~e~l~~-yp~sFDlVha 249 (334)
.-+|||.=||+|-=+... .+ .+ +..|+..|++++.++.+.+. ++.. ..+..+..+.. -.+.||+|--
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~--~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAG--VDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SS--ECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCC--CCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 358999999999655444 44 33 35799999999988876553 3222 22222222222 2488999965
Q ss_pred chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
. .--.+..+|.-..|.+|-||+|.++-
T Consensus 128 D-------PfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 D-------PFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ---------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred C-------CCCCccHhHHHHHHHhhcCCEEEEec
Confidence 4 11235688888999999999999974
No 328
>PTZ00146 fibrillarin; Provisional
Probab=57.09 E-value=6 Score=38.72 Aligned_cols=19 Identities=21% Similarity=0.480 Sum_probs=16.6
Q ss_pred eeeEeecccccCCceEEEe
Q 019879 13 RYMIEVDRVLRPGGYWVLS 31 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~s 31 (334)
++++|+.|+|+|||+|+.+
T Consensus 218 il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 218 IVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred HHHHHHHHhccCCCEEEEE
Confidence 4567899999999999985
No 329
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=57.00 E-value=53 Score=31.18 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=65.3
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHH----HHHcCc--------cc--hhhhhcccCC--CCC-Cc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV----IYERGL--------IG--IYHDWCEAFS--TYP-RT 243 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~----a~~Rgl--------i~--~~~d~~e~l~--~yp-~s 243 (334)
.+.|+.+|||.=+.+-.|.... .+.+.-+|.+ ++++. ..+.|. ++ ...+|.+.+. .|+ +.
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~--~~~~~EvD~P-~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPD--GTRVFEVDQP-AVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCC--CCeEEECCCh-HHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 6789999999998887775432 2468899986 66552 222111 00 1134544432 243 44
Q ss_pred cceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 244 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 244 FDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
-=++++-.|+.++. ......+|..+.+..-||+.+++.-
T Consensus 159 ptl~i~EGvl~YL~-~~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 159 PTAWLWEGLLMYLT-EEAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred CeeeeecchhhcCC-HHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 44778888888765 4567889999999888999998863
No 330
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=56.96 E-value=47 Score=31.07 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=53.3
Q ss_pred CCceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h--hhcccCCCC-CCccceEEech
Q 019879 180 RYRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DWCEAFSTY-PRTYDLIHAHG 251 (334)
Q Consensus 180 ~~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~~e~l~~y-p~sFDlVha~~ 251 (334)
...+||=.|+ |.|.++..+++ .|+ .|+.++.+++..+.+.+.|....+ . ++.+.+... ++.+|+|+-.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~---~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~- 218 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGC---KVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDN- 218 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEEC-
Confidence 3467877764 45556666665 354 466666666777777776642211 1 111111111 2568888642
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. -...+.+..+.|+++|.++..
T Consensus 219 -~--------g~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 219 -V--------GGEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred -C--------CHHHHHHHHHhhccCCEEEEE
Confidence 1 125678999999999999864
No 331
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=56.87 E-value=50 Score=32.04 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=53.7
Q ss_pred CCceEeeecc--cccHHHHHHHhC-CCcEEEEEeccCChhhHHHHH-HcCccch--hh---hhcccCCC-CCCccceEEe
Q 019879 180 RYRNIMDMNA--GFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIY-ERGLIGI--YH---DWCEAFST-YPRTYDLIHA 249 (334)
Q Consensus 180 ~~r~VLD~GC--G~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~-~Rgli~~--~~---d~~e~l~~-yp~sFDlVha 249 (334)
...+||=.|+ |.|.++..+++. |+ .|+.++.+++.++.+. +-|.... +. ++.+.+.. .++.+|+|+-
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~---~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d 234 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGC---YVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFD 234 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEE
Confidence 3478888887 366677777663 53 4677777766777665 4554211 11 11111111 1246888864
Q ss_pred chhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. . . ...+.+..+.|++||.+++.
T Consensus 235 ~-----v----G-~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 235 N-----V----G-GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred C-----C----C-HHHHHHHHHHhccCCEEEEE
Confidence 2 1 1 24778889999999999864
No 332
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=56.74 E-value=6 Score=35.82 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=18.9
Q ss_pred eeeEeecccccCCceEEEecCC
Q 019879 13 RYMIEVDRVLRPGGYWVLSGPP 34 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~s~pp 34 (334)
.+|-|+.|+|+|||+|+++.+.
T Consensus 137 ~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 137 EFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred HHHHHHHHHcCCCCEEEEEcCC
Confidence 3577899999999999998774
No 333
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=56.65 E-value=2.6 Score=39.42 Aligned_cols=18 Identities=50% Similarity=0.826 Sum_probs=15.4
Q ss_pred eeeEeecccccCCceEEE
Q 019879 13 RYMIEVDRVLRPGGYWVL 30 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~ 30 (334)
..|-|+=|||||||.++.
T Consensus 134 ~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 134 RALREMYRVLKPGGRLVI 151 (233)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEE
Confidence 356799999999999886
No 334
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=56.26 E-value=56 Score=30.87 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=52.8
Q ss_pred CceEeeecc--cccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccch--hh---hhcccCC-CCCCccceEEech
Q 019879 181 YRNIMDMNA--GFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGI--YH---DWCEAFS-TYPRTYDLIHAHG 251 (334)
Q Consensus 181 ~r~VLD~GC--G~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~---d~~e~l~-~yp~sFDlVha~~ 251 (334)
..+||=.|+ |.|.++..+++. |+ .|+.++.+++.++.+.+.|.... +. ++.+... ..++.+|+|+-.
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~---~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~- 214 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGC---KVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDN- 214 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEEC-
Confidence 468887775 466666666663 54 46666667677777776664211 11 1111000 112568888542
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.. ...+.+..+.|+|||.++..
T Consensus 215 ----~G-----~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 215 ----VG-----GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred ----CC-----HHHHHHHHHHhCcCcEEEEe
Confidence 11 23567889999999999875
No 335
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=56.13 E-value=3.2 Score=39.14 Aligned_cols=17 Identities=47% Similarity=0.833 Sum_probs=14.8
Q ss_pred eeEeecccccCCceEEE
Q 019879 14 YMIEVDRVLRPGGYWVL 30 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~ 30 (334)
-|-|+-|||||||-+++
T Consensus 164 ~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 164 QLNEVRRLLRPGGRIIF 180 (252)
T ss_pred HHHHHHHhcCCCcEEEE
Confidence 36689999999998887
No 336
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=55.97 E-value=39 Score=35.96 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=53.9
Q ss_pred ccccHHHHHHH----hCCCcEEEEEeccCChhhHHHHHHcCccchhhhhccc--CCCCC-CccceEEechhhccccCcCC
Q 019879 189 AGFGGFAAAIQ----SSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA--FSTYP-RTYDLIHAHGLFSLYKDKCN 261 (334)
Q Consensus 189 CG~G~faa~L~----~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~--l~~yp-~sFDlVha~~vfs~~~~~c~ 261 (334)
||+|.++..+. +.+ .+++.+|.+++.++.+.+.|....+.|-++. +---. ...|++++. ..+ .+
T Consensus 406 ~G~Gr~G~~va~~L~~~g---~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~-----~~d-~~ 476 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANK---MRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVIT-----CNE-PE 476 (601)
T ss_pred ecCchHHHHHHHHHHhCC---CCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEE-----eCC-HH
Confidence 66777665554 345 4689999999999988887764444332221 11123 567777665 122 22
Q ss_pred HHHHHHHHHHhhcCCeEEEEEeC
Q 019879 262 IEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 262 ~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
....+.++-|-+.|...++.+-.
T Consensus 477 ~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 477 DTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeC
Confidence 33456667788889999988743
No 337
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=55.53 E-value=43 Score=29.05 Aligned_cols=95 Identities=15% Similarity=0.110 Sum_probs=53.8
Q ss_pred eccccc--HHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc--hhhhhcccCCCCCCccceEEechhhccccCcCCH
Q 019879 187 MNAGFG--GFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG--IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNI 262 (334)
Q Consensus 187 ~GCG~G--~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~--~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~ 262 (334)
+|+|.= .++..|++.+. +|+..|.+++..+...+.|... ...+.+ ...|+|+.. +++....
T Consensus 7 IGlG~mG~~~a~~L~~~g~---~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~-------~~~dvvi~~-----v~~~~~v 71 (163)
T PF03446_consen 7 IGLGNMGSAMARNLAKAGY---EVTVYDRSPEKAEALAEAGAEVADSPAEAA-------EQADVVILC-----VPDDDAV 71 (163)
T ss_dssp E--SHHHHHHHHHHHHTTT---EEEEEESSHHHHHHHHHTTEEEESSHHHHH-------HHBSEEEE------SSSHHHH
T ss_pred EchHHHHHHHHHHHHhcCC---eEEeeccchhhhhhhHHhhhhhhhhhhhHh-------hcccceEee-----cccchhh
Confidence 455432 25667777774 5777888877777766666321 111111 344888764 3433456
Q ss_pred HHHHHH--HHHhhcCCeEEEEEeChh--hHHHHHHHHh
Q 019879 263 EDILLE--MDRILRPEGAIIIRDEVD--EIIKVKKIVG 296 (334)
Q Consensus 263 ~~~L~E--m~RVLRPGG~lii~D~~~--~~~~i~~~~~ 296 (334)
+.++.+ +..-|++|-.++-..+.. ...++.+.+.
T Consensus 72 ~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~ 109 (163)
T PF03446_consen 72 EAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLA 109 (163)
T ss_dssp HHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHH
T ss_pred hhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhh
Confidence 788888 888888988888776544 3445555543
No 338
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=55.27 E-value=54 Score=31.25 Aligned_cols=90 Identities=13% Similarity=0.205 Sum_probs=52.7
Q ss_pred CCceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHH-cCccchhh-----hhcccCCC-CCCccceEEe
Q 019879 180 RYRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYE-RGLIGIYH-----DWCEAFST-YPRTYDLIHA 249 (334)
Q Consensus 180 ~~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~-Rgli~~~~-----d~~e~l~~-yp~sFDlVha 249 (334)
...+||=.|+ |.|.++..+++ .|+ +|+.++.+++..+.+.+ -|....+. ++.+.+.. .++.+|+|+-
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~---~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d 227 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGC---YVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFD 227 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEE
Confidence 3478888886 45666666665 454 46666666666676665 45311111 11111111 1256888854
Q ss_pred chhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. .. ...+.+..+.|+++|.++..
T Consensus 228 ~-----~g-----~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 228 N-----VG-----GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred C-----CC-----HHHHHHHHHHhccCcEEEEe
Confidence 2 11 25678899999999999864
No 339
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=54.92 E-value=46 Score=32.13 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=51.1
Q ss_pred CCceEeeecccccHH-HHHHHhC--CCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccc
Q 019879 180 RYRNIMDMNAGFGGF-AAAIQSS--KLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLY 256 (334)
Q Consensus 180 ~~r~VLD~GCG~G~f-aa~L~~~--~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~ 256 (334)
...+||=.|||.=+. +..++.+ +. ..|+.+|.+++-++.+.+-+......++.+. ..||+|+-. ...
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~--~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~-----~g~d~viD~--~G~- 232 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPE--SKLVVFGKHQEKLDLFSFADETYLIDDIPED-----LAVDHAFEC--VGG- 232 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCC--CcEEEEeCcHhHHHHHhhcCceeehhhhhhc-----cCCcEEEEC--CCC-
Confidence 347899999865443 3444442 22 3577778777777776542321111111111 247887532 110
Q ss_pred cCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 257 KDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 257 ~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
......+.+..+.|||||.+++.
T Consensus 233 ---~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 233 ---RGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred ---CccHHHHHHHHHhCcCCcEEEEE
Confidence 01246788899999999998874
No 340
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=54.21 E-value=54 Score=30.98 Aligned_cols=91 Identities=20% Similarity=0.201 Sum_probs=50.0
Q ss_pred CceEeeeccc-ccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccch--hh--hhcccCCC-CC-CccceEEechh
Q 019879 181 YRNIMDMNAG-FGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGI--YH--DWCEAFST-YP-RTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG-~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~--d~~e~l~~-yp-~sFDlVha~~v 252 (334)
..+||-.|+| .|.++..+++. +. ..++.++.+......+.+.|.... ++ ++.+.+.. .+ +.||+|+-..
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~--~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~- 244 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGA--ARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAV- 244 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEcc-
Confidence 4678887764 34455555543 42 135555666566666555442111 11 11121111 23 6789886430
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. -...+.++.+.|+++|.++..
T Consensus 245 ----g----~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 245 ----G----FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred ----C----CHHHHHHHHHHhhcCCEEEEE
Confidence 0 125788999999999998864
No 341
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=53.35 E-value=47 Score=32.38 Aligned_cols=92 Identities=15% Similarity=0.064 Sum_probs=53.4
Q ss_pred CceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh----hhcccCCCC-CCccceEEechhh
Q 019879 181 YRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DWCEAFSTY-PRTYDLIHAHGLF 253 (334)
Q Consensus 181 ~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~~e~l~~y-p~sFDlVha~~vf 253 (334)
..+||=.|+|. |.++..+++ .++ ..|+.++.++..++.+.+-|...++. ++.+.+... ++.+|+|+-..
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~-- 267 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGA--SQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA-- 267 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC--
Confidence 35677788753 334444544 343 14777888888888887766522211 111111111 13578886420
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
.-...+.+..+.|+|||.+++..
T Consensus 268 -------G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 268 -------GSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred -------CChHHHHHHHHHHhcCCEEEEEc
Confidence 11357778889999999988753
No 342
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=53.19 E-value=33 Score=29.15 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=45.4
Q ss_pred CccceEEechhhccccCcCC-HHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEecCCCCCCCCceEEEE
Q 019879 242 RTYDLIHAHGLFSLYKDKCN-IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVA 320 (334)
Q Consensus 242 ~sFDlVha~~vfs~~~~~c~-~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~ 320 (334)
..||+|+-.. |+--.+..- -..++.++.|+++|||.+.-...... |++-+....+++...... -.+...+++
T Consensus 49 ~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~~---Vr~~L~~aGF~v~~~~g~---g~Kr~~~~a 121 (124)
T PF05430_consen 49 ARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYSSAGA---VRRALQQAGFEVEKVPGF---GRKREMLRA 121 (124)
T ss_dssp T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--BHH---HHHHHHHCTEEEEEEE-S---TTSSEEEEE
T ss_pred ccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEeechHH---HHHHHHHcCCEEEEcCCC---CCcchheEE
Confidence 6677776552 442211110 15899999999999998887666553 456677778887654322 246778888
Q ss_pred Eec
Q 019879 321 VKQ 323 (334)
Q Consensus 321 ~K~ 323 (334)
.|+
T Consensus 122 ~~~ 124 (124)
T PF05430_consen 122 VKP 124 (124)
T ss_dssp EC-
T ss_pred EcC
Confidence 874
No 343
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=52.74 E-value=75 Score=30.68 Aligned_cols=91 Identities=14% Similarity=0.054 Sum_probs=53.4
Q ss_pred CceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h--hhcccCCC-CC-CccceEEechh
Q 019879 181 YRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DWCEAFST-YP-RTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~~e~l~~-yp-~sFDlVha~~v 252 (334)
..+||=.|||. |.++..+++ .|+ ..|+.++.++..++.+.+.|....+ + ++.+.+.. .+ +.+|+|+-.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~--~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~-- 252 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGA--SKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDA-- 252 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC--
Confidence 46888888753 334444544 343 2477888887888888776642111 1 11111111 12 458888532
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. .-...+.+..+.||+||.+++.
T Consensus 253 ---~----g~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 253 ---V----GRPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred ---C----CCHHHHHHHHHHhccCCEEEEE
Confidence 1 1135677888999999999875
No 344
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=52.50 E-value=32 Score=32.59 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=52.0
Q ss_pred CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhh---cccCCCC-C-CccceEEechh
Q 019879 180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDW---CEAFSTY-P-RTYDLIHAHGL 252 (334)
Q Consensus 180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~---~e~l~~y-p-~sFDlVha~~v 252 (334)
...+||-.|+|. |.++..+++ .|+. .|+.++.++...+.+.+.|....+..- .+.+... + +.||+|+..
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~--~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~-- 234 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAK--RVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEA-- 234 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEEC--
Confidence 346888888654 445555554 3432 266666666666666655542111100 1111112 2 458988643
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. .-...+.++.+.|+++|.++..
T Consensus 235 ---~----g~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 235 ---A----GSPATIEQALALARPGGKVVLV 257 (343)
T ss_pred ---C----CCHHHHHHHHHHhhcCCEEEEE
Confidence 1 1135778999999999998865
No 345
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=51.39 E-value=2.2 Score=35.66 Aligned_cols=23 Identities=43% Similarity=0.956 Sum_probs=19.1
Q ss_pred eeeEeecccccCCceEEEecCCC
Q 019879 13 RYMIEVDRVLRPGGYWVLSGPPI 35 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~s~pp~ 35 (334)
.+|-++-|+|+|||+++.+-|-.
T Consensus 96 ~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 96 EFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHHHHhcCCCCEEEEEEcCC
Confidence 35667889999999999998754
No 346
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=51.32 E-value=1.2e+02 Score=33.13 Aligned_cols=84 Identities=17% Similarity=0.057 Sum_probs=51.3
Q ss_pred CCCccceEEechhhccccCcCCHHHHH-HHHHHhhcCCeEEEEEeCh--------hhHHHHHHHHhcccceEEEecCCCC
Q 019879 240 YPRTYDLIHAHGLFSLYKDKCNIEDIL-LEMDRILRPEGAIIIRDEV--------DEIIKVKKIVGGMRWDTKMVDHEDG 310 (334)
Q Consensus 240 yp~sFDlVha~~vfs~~~~~c~~~~~L-~Em~RVLRPGG~lii~D~~--------~~~~~i~~~~~~l~W~~~~~~~~~~ 310 (334)
+.-++|||++.+=..-..-...++..+ .-++++|.++|.+|+-+-- ..+..+...+..+..-.+- -..
T Consensus 412 ~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~F~~V~l~qT~---~SS 488 (675)
T PF14314_consen 412 HNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRYFKSVELVQTQ---FSS 488 (675)
T ss_pred cCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhhcCceEEEECC---CCC
Confidence 346899999974221100011244444 4456899999999997521 2555666667766654332 233
Q ss_pred CCCCceEEEEEecccc
Q 019879 311 PLVPEKILVAVKQYWV 326 (334)
Q Consensus 311 ~~~~e~~l~~~K~~w~ 326 (334)
++..|.+++++|.-=.
T Consensus 489 s~TSEVYlv~~~~~~~ 504 (675)
T PF14314_consen 489 SFTSEVYLVFQKLKKF 504 (675)
T ss_pred CCceEEEEEEecccCC
Confidence 5578999999986543
No 347
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=51.00 E-value=57 Score=30.43 Aligned_cols=93 Identities=16% Similarity=0.111 Sum_probs=53.3
Q ss_pred CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--hhhcccC--CCCCCccceEEechhh
Q 019879 180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--HDWCEAF--STYPRTYDLIHAHGLF 253 (334)
Q Consensus 180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~d~~e~l--~~yp~sFDlVha~~vf 253 (334)
...+||=+|+|. |.+++.+++ .++. .|+.++.+++.++.+.+.|..... .+..+.+ .+-.+.+|+|+-.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~--~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~--- 194 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAA--RVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEF--- 194 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEEC---
Confidence 346788888753 223344444 3532 366667777788888777752211 1111111 1122468888542
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
. .-...+.+..+.|||||.+++.-
T Consensus 195 --~----G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 195 --S----GATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred --C----CChHHHHHHHHHhcCCCEEEEec
Confidence 0 11357888899999999998743
No 348
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=49.88 E-value=97 Score=29.00 Aligned_cols=104 Identities=19% Similarity=0.198 Sum_probs=56.2
Q ss_pred eEeeecccccH--HHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc---hhhhhcccCCCC-C-CccceEEechhhcc
Q 019879 183 NIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG---IYHDWCEAFSTY-P-RTYDLIHAHGLFSL 255 (334)
Q Consensus 183 ~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~---~~~d~~e~l~~y-p-~sFDlVha~~vfs~ 255 (334)
+|.=+|||.-| +|..|.+.+. +|+-++-+++.++.+.+.|+.- ....-....... + ..+|+|+..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~---~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila----- 73 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH---DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILA----- 73 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC---eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEe-----
Confidence 46667877643 5666676663 5666666556666666666421 100000001111 1 568988664
Q ss_pred ccCcCCHHHHHHHHHHhhcCCeEEEEEe-ChhhHHHHHHHH
Q 019879 256 YKDKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIV 295 (334)
Q Consensus 256 ~~~~c~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~~~ 295 (334)
.+ ..+.+.++.++...+.++..+++.- .....+.+++.+
T Consensus 74 ~k-~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 74 VK-AYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred cc-cccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 11 2346788889988888776655432 333334445443
No 349
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=48.90 E-value=49 Score=33.51 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=38.7
Q ss_pred hhhhHHHHHHH-HHHHhhcCCCCCceEeeecccccHHHHHHHhC-----C--CcEEEEEeccCChhh
Q 019879 159 SNKWKKHVNAY-KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSS-----K--LWVMNVVPTLADKNT 217 (334)
Q Consensus 159 ~~~W~~~v~~y-~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-----~--v~v~nVv~vD~s~~~ 217 (334)
++.+-+.+..+ .++...+.......++.||+|.|.|+..|+.. + .....+.-++.|++.
T Consensus 55 s~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 55 SQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 55566666654 33444444444578999999999999888652 1 124567778888654
No 350
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=48.81 E-value=19 Score=31.71 Aligned_cols=41 Identities=17% Similarity=-0.018 Sum_probs=28.1
Q ss_pred eEeecccccCCceEEEecCCCCccccccccCCChHHHHHHHHHHHHHHHhhcccccce
Q 019879 15 MIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSE 72 (334)
Q Consensus 15 l~E~dR~LrpgGy~v~s~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cw~~~~~ 72 (334)
+-++-|+|+|||+++++.... ...+.+.++.+...++.+..
T Consensus 114 l~~~~~~Lk~gG~lv~~~~~~-----------------~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 114 IDWSLAHLHPGGRLVLTFILL-----------------ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred HHHHHHhcCCCeEEEEEEecH-----------------hhHHHHHHHHHHCCCCcceE
Confidence 345679999999999976532 12345667777888876543
No 351
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=48.62 E-value=4.4 Score=36.54 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=16.6
Q ss_pred eeEeecccccCCceEEEecC
Q 019879 14 YMIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~p 33 (334)
+|-++.|+|+|||+++++.+
T Consensus 86 ~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 86 LFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHHHHHcCCCCEEEEEEc
Confidence 44567899999999999866
No 352
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=48.54 E-value=19 Score=33.46 Aligned_cols=67 Identities=22% Similarity=0.315 Sum_probs=39.6
Q ss_pred eeEeecccccCCceEEEecCCCCccccccc--------c--CCChHHHHHHHHHHHHHHHhhcccccceec-----ceEE
Q 019879 14 YMIEVDRVLRPGGYWVLSGPPINWKTNYKA--------W--QRPKEELQEEQRKIEEIANLLCWEKKSEKG-----EIAV 78 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~pp~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~cw~~~~~~~-----~~~i 78 (334)
++-+.-|+|+|||.+++-||=. ...+|-. + .|+++-=-.+.+.++++|..-..++..... .+.|
T Consensus 123 lf~~a~~~L~~gG~L~~YGPF~-~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~MPANN~~Lv 201 (204)
T PF06080_consen 123 LFAGAARLLKPGGLLFLYGPFN-RDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDIDMPANNLLLV 201 (204)
T ss_pred HHHHHHHhCCCCCEEEEeCCcc-cCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCcccccCCCCeEEE
Confidence 4557789999999999999832 2222211 0 011110001234688899998888765432 2667
Q ss_pred EEc
Q 019879 79 WQK 81 (334)
Q Consensus 79 w~K 81 (334)
|+|
T Consensus 202 frk 204 (204)
T PF06080_consen 202 FRK 204 (204)
T ss_pred EeC
Confidence 776
No 353
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=48.02 E-value=22 Score=33.18 Aligned_cols=44 Identities=20% Similarity=0.088 Sum_probs=29.1
Q ss_pred CceEeeecccccHHHHHHHhC--CC-----cEEEEEeccCChhhHHHHHHc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSS--KL-----WVMNVVPTLADKNTLGVIYER 224 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~--~v-----~v~nVv~vD~s~~~L~~a~~R 224 (334)
.-+|+++|+|.|.++..+++. .. ..+.++-++.|+.+.+.-+++
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~ 69 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKER 69 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHH
Confidence 479999999999999988762 11 125688888887665544433
No 354
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=47.94 E-value=6.9 Score=37.48 Aligned_cols=15 Identities=40% Similarity=0.882 Sum_probs=12.3
Q ss_pred cccccCCceEEEecC
Q 019879 19 DRVLRPGGYWVLSGP 33 (334)
Q Consensus 19 dR~LrpgGy~v~s~p 33 (334)
=++|||||+||+.+-
T Consensus 186 ~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 186 SSLLKPGGHLILAGV 200 (256)
T ss_dssp HTTEEEEEEEEEEEE
T ss_pred HHHcCCCcEEEEEEE
Confidence 378999999999653
No 355
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=47.64 E-value=68 Score=30.76 Aligned_cols=85 Identities=11% Similarity=0.139 Sum_probs=49.6
Q ss_pred Eeeeccccc--HHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccch--hhhhcccCCCCCCccceEEechhhccccCc
Q 019879 184 IMDMNAGFG--GFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGI--YHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 259 (334)
Q Consensus 184 VLD~GCG~G--~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~d~~e~l~~yp~sFDlVha~~vfs~~~~~ 259 (334)
|-=+|+|.= .++..|++.+. .|+..|.+++.++.+.+.|.... ..+..+.+ ..-|+|+.. +++.
T Consensus 3 Ig~IGlG~mG~~la~~L~~~g~---~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~----~~~dvIi~~-----vp~~ 70 (298)
T TIGR00872 3 LGLIGLGRMGANIVRRLAKRGH---DCVGYDHDQDAVKAMKEDRTTGVANLRELSQRL----SAPRVVWVM-----VPHG 70 (298)
T ss_pred EEEEcchHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHcCCcccCCHHHHHhhc----CCCCEEEEE-----cCch
Confidence 334677653 36677777763 46667887777776666653221 11111111 335887654 3333
Q ss_pred CCHHHHHHHHHHhhcCCeEEEE
Q 019879 260 CNIEDILLEMDRILRPEGAIII 281 (334)
Q Consensus 260 c~~~~~L~Em~RVLRPGG~lii 281 (334)
....++.++...|+||-.++-
T Consensus 71 -~~~~v~~~l~~~l~~g~ivid 91 (298)
T TIGR00872 71 -IVDAVLEELAPTLEKGDIVID 91 (298)
T ss_pred -HHHHHHHHHHhhCCCCCEEEE
Confidence 567888899888988854443
No 356
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=47.51 E-value=1e+02 Score=31.99 Aligned_cols=98 Identities=12% Similarity=0.183 Sum_probs=54.9
Q ss_pred CceEeeecccccHHHHHHHh---CCCcEEEEEeccCChhhHHHHHH----cCccc-hh-hhhcccCCC--C-C-CccceE
Q 019879 181 YRNIMDMNAGFGGFAAAIQS---SKLWVMNVVPTLADKNTLGVIYE----RGLIG-IY-HDWCEAFST--Y-P-RTYDLI 247 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~---~~v~v~nVv~vD~s~~~L~~a~~----Rgli~-~~-~d~~e~l~~--y-p-~sFDlV 247 (334)
...|.|+-||+|+|...... .+--...+++.+...+|...+.. +|..+ .+ ......+.. + . ..||.|
T Consensus 218 ~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v 297 (501)
T TIGR00497 218 VDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVV 297 (501)
T ss_pred CCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEE
Confidence 36899999999998765332 12223568888888777665543 23211 11 111122222 2 2 568888
Q ss_pred Eechhhcc---------------------ccCcC-CHHHHHHHHHHhhcCCeE
Q 019879 248 HAHGLFSL---------------------YKDKC-NIEDILLEMDRILRPEGA 278 (334)
Q Consensus 248 ha~~vfs~---------------------~~~~c-~~~~~L~Em~RVLRPGG~ 278 (334)
.++-=|+. +.+.. .=-.++.-+..+|++||.
T Consensus 298 ~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~ 350 (501)
T TIGR00497 298 VSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGT 350 (501)
T ss_pred eecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCe
Confidence 77642221 00000 112677788999999996
No 357
>PLN02244 tocopherol O-methyltransferase
Probab=47.42 E-value=4.7 Score=39.64 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=18.3
Q ss_pred ceeeEeecccccCCceEEEecC
Q 019879 12 GRYMIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 12 g~~l~E~dR~LrpgGy~v~s~p 33 (334)
..+|-|+-|+|||||.|+++..
T Consensus 203 ~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 203 RKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred HHHHHHHHHHcCCCcEEEEEEe
Confidence 4567789999999999999754
No 358
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=46.81 E-value=75 Score=33.28 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=50.7
Q ss_pred ccccHHHHHHH----hCCCcEEEEEeccCChhhHHHHHHcCccchhhhhccc--CCCCC-CccceEEechhhccccCcCC
Q 019879 189 AGFGGFAAAIQ----SSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA--FSTYP-RTYDLIHAHGLFSLYKDKCN 261 (334)
Q Consensus 189 CG~G~faa~L~----~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~--l~~yp-~sFDlVha~~vfs~~~~~c~ 261 (334)
||+|.++..+. +++ .+++-+|.+++..+.+.+.|....+.|-.+. +---. +..|.+++. ..+ .+
T Consensus 423 ~G~G~~G~~la~~L~~~g---~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~-----~~~-~~ 493 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAG---IPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLT-----IPN-GY 493 (558)
T ss_pred ECCChHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEE-----cCC-hH
Confidence 56666555544 445 4689999998888888887754444332221 11123 677866543 111 11
Q ss_pred HHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 262 IEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 262 ~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
-...+...-|-+.|.-.++.+-..
T Consensus 494 ~~~~iv~~~~~~~~~~~iiar~~~ 517 (558)
T PRK10669 494 EAGEIVASAREKRPDIEIIARAHY 517 (558)
T ss_pred HHHHHHHHHHHHCCCCeEEEEECC
Confidence 222344556777898888887543
No 359
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=46.71 E-value=49 Score=27.71 Aligned_cols=98 Identities=21% Similarity=0.281 Sum_probs=57.9
Q ss_pred ecccc-cH-HHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcc-------cCCCC--C-CccceEEechhhc
Q 019879 187 MNAGF-GG-FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCE-------AFSTY--P-RTYDLIHAHGLFS 254 (334)
Q Consensus 187 ~GCG~-G~-faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e-------~l~~y--p-~sFDlVha~~vfs 254 (334)
+|+|. |. +|..|.+.+. +|+-++-+. .++...+.|+.-...+ .+ ..... . ..||+|+..
T Consensus 4 ~G~GaiG~~~a~~L~~~g~---~V~l~~r~~-~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~viv~---- 74 (151)
T PF02558_consen 4 IGAGAIGSLYAARLAQAGH---DVTLVSRSP-RLEAIKEQGLTITGPD-GDETVQPPIVISAPSADAGPYDLVIVA---- 74 (151)
T ss_dssp ESTSHHHHHHHHHHHHTTC---EEEEEESHH-HHHHHHHHCEEEEETT-EEEEEEEEEEESSHGHHHSTESEEEE-----
T ss_pred ECcCHHHHHHHHHHHHCCC---ceEEEEccc-cHHhhhheeEEEEecc-cceecccccccCcchhccCCCcEEEEE----
Confidence 45553 33 5666666553 567776664 6666777776322111 11 11222 3 789998765
Q ss_pred cccCcCCHHHHHHHHHHhhcCCeEEEEEeC-hhhHHHHHHHH
Q 019879 255 LYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIV 295 (334)
Q Consensus 255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~~~ 295 (334)
..--+.+.++..+.+.+.|+..+++.-+ ....+.+++.+
T Consensus 75 --vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 75 --VKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp --SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred --ecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 1122568899999999999977766543 44455555554
No 360
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=46.58 E-value=98 Score=29.43 Aligned_cols=92 Identities=14% Similarity=0.101 Sum_probs=49.5
Q ss_pred CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh----hhcccCC-CCC-CccceEEech
Q 019879 180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DWCEAFS-TYP-RTYDLIHAHG 251 (334)
Q Consensus 180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~~e~l~-~yp-~sFDlVha~~ 251 (334)
+..+||-.|+|. |.+++.|++ .+.. +|+.++.++.....+.+-|...... ++. .+. ..+ +.+|+|+...
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~--~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~vd~vld~~ 239 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGAS--LVIASDPNPYRLELAKKMGADVVINPREEDVV-EVKSVTDGTGVDVVLEMS 239 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHhCcceeeCcccccHH-HHHHHcCCCCCCEEEECC
Confidence 346777777643 345555554 3431 3455555555555555555321111 110 000 012 5688886531
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
. -...+.++.+.|+|+|.++...
T Consensus 240 -g--------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 240 -G--------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred -C--------CHHHHHHHHHHhccCCEEEEEc
Confidence 0 1356788999999999998764
No 361
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=46.07 E-value=3.3 Score=38.88 Aligned_cols=57 Identities=21% Similarity=0.405 Sum_probs=34.5
Q ss_pred eeeEeecccccCCceEEEecCCCCccccccccCCChHHHHHHHHHHHHHHHhhcccccceecc-----eEEEEccCC
Q 019879 13 RYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGE-----IAVWQKKVN 84 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~s~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cw~~~~~~~~-----~~iw~Kp~~ 84 (334)
-+|.|.+|||||||.+...--- .+. ++ -+...+..+++=.++..+... +..++|..+
T Consensus 139 ~fi~EA~RvLK~~G~L~IAEV~----SRf-------~~----~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 139 DFIREANRVLKPGGILKIAEVK----SRF-------EN----VKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIRK 200 (219)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEG----GG--------S-----HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-SS
T ss_pred HHHHHHHheeccCcEEEEEEec----ccC-------cC----HHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcCc
Confidence 3688999999999998775321 111 01 123556677888887776542 456677664
No 362
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=46.01 E-value=15 Score=32.79 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=14.8
Q ss_pred EeecccccCCceEEEecCC
Q 019879 16 IEVDRVLRPGGYWVLSGPP 34 (334)
Q Consensus 16 ~E~dR~LrpgGy~v~s~pp 34 (334)
-++.|+|+|||.++..-.+
T Consensus 126 ~~~~~~LkpgG~lvi~~~~ 144 (181)
T TIGR00138 126 ELTLNLLKVGGYFLAYKGK 144 (181)
T ss_pred HHHHHhcCCCCEEEEEcCC
Confidence 3568999999999976443
No 363
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=45.99 E-value=39 Score=35.09 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=54.9
Q ss_pred eEeeecccccH--HHHHHHhCCCcEEEEEeccCChhhHHHHHH-------cCccchhhhhccc-C--CC-CC---Cccce
Q 019879 183 NIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLGVIYE-------RGLIGIYHDWCEA-F--ST-YP---RTYDL 246 (334)
Q Consensus 183 ~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~~L~~a~~-------Rgli~~~~d~~e~-l--~~-yp---~sFDl 246 (334)
+|-=+|+|+.| +|+.|+++|. ..+|+++|.+++-++.+.+ .|+...+..-... + .+ +. ..-|+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~-g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCP-DIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-CCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 46667999988 4566777642 2478999998777765432 2222111110011 1 00 11 23455
Q ss_pred EEec-hhhc--------cccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 247 IHAH-GLFS--------LYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 247 Vha~-~vfs--------~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++.. ..-. +-.+-..++.+.+++.+.|++|-.+++..+
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST 128 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 5332 1111 011112367899999999999887777765
No 364
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=45.90 E-value=85 Score=29.51 Aligned_cols=103 Identities=16% Similarity=0.234 Sum_probs=55.6
Q ss_pred eEeeecccccH--HHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhh--h------hcccCCCCCCccceEEechh
Q 019879 183 NIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYH--D------WCEAFSTYPRTYDLIHAHGL 252 (334)
Q Consensus 183 ~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~--d------~~e~l~~yp~sFDlVha~~v 252 (334)
+|+=+|+|.-+ +|..|.+.+. +|+.++. ++.++.+.+.|+..... + -+.+.......+|+|+..
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~---~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vila-- 75 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR---DVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILA-- 75 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC---ceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEE--
Confidence 46667888755 5667777663 4566665 45666666666421100 0 000100011568877654
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEE-eChhhHHHHHHHH
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIV 295 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~~~ 295 (334)
.+ .-.++.++.++...+.++..+++. ......+.++..+
T Consensus 76 ---vk-~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~ 115 (305)
T PRK12921 76 ---VK-AYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYF 115 (305)
T ss_pred ---ec-ccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhC
Confidence 11 224778888998888887655533 3333344455443
No 365
>PRK04266 fibrillarin; Provisional
Probab=45.42 E-value=5.4 Score=37.22 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=16.0
Q ss_pred eeEeecccccCCceEEEe
Q 019879 14 YMIEVDRVLRPGGYWVLS 31 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s 31 (334)
+|-|+-|+|+|||++|.+
T Consensus 158 ~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 158 AIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred HHHHHHHhcCCCcEEEEE
Confidence 356899999999999998
No 366
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=44.94 E-value=80 Score=30.17 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=52.4
Q ss_pred CceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh----hhcccCCCC-C-CccceEEechh
Q 019879 181 YRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DWCEAFSTY-P-RTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~~e~l~~y-p-~sFDlVha~~v 252 (334)
..+||=.|+|. |.+++.+++ .|+. .|+.++.+++.+..+.+-|...... ++.+.+..+ + +.+|+|+-..
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~G~~--~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~- 243 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLRGAG--RIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAG- 243 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECC-
Confidence 46777777652 334444444 3432 3677777767777777766421111 111111111 2 5689886430
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.-...+.++.+.|+++|.++..
T Consensus 244 --------g~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 244 --------GGQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred --------CCHHHHHHHHHHhhcCCEEEEe
Confidence 1135788999999999998864
No 367
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=44.90 E-value=59 Score=29.08 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=22.7
Q ss_pred CCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 241 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 241 p~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
++..|+++|.. ... +.....-|||||++++.+.
T Consensus 65 ~~~~D~lva~d----------~~~-~~~~~~~l~~gg~ii~ns~ 97 (197)
T PRK06274 65 EGQADLLLALE----------PAE-VARNLHFLKKGGKIIVNAY 97 (197)
T ss_pred CCCCCEEEEcC----------HHH-HHHHHhhcCCCcEEEEECC
Confidence 48999999852 222 2344456999999988753
No 368
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=44.84 E-value=8.1 Score=37.95 Aligned_cols=17 Identities=47% Similarity=1.001 Sum_probs=14.7
Q ss_pred eecccccCCceEEEecC
Q 019879 17 EVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 17 E~dR~LrpgGy~v~s~p 33 (334)
++-|.|+|||++++||=
T Consensus 248 ~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 248 DIKRLLKPGGRLILSGI 264 (300)
T ss_pred HHHHHcCCCceEEEEee
Confidence 45689999999999994
No 369
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=44.65 E-value=5.5 Score=37.67 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=16.9
Q ss_pred eeEeecccccCCceEEEecCC
Q 019879 14 YMIEVDRVLRPGGYWVLSGPP 34 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~pp 34 (334)
+|-|+-|+|+|||+|+.+.+.
T Consensus 138 ~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 138 LFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred HHHHHHHHcCCCcEEEEEEec
Confidence 455677999999999998663
No 370
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=44.32 E-value=19 Score=32.60 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=28.0
Q ss_pred EeecccccCCceEEEecCCCCccccccccCCChHHHHHHHHHHHHHHHhhcccccc
Q 019879 16 IEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKS 71 (334)
Q Consensus 16 ~E~dR~LrpgGy~v~s~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cw~~~~ 71 (334)
-++-|+|||||+++..-++. .-..++++++.+=|.+-+
T Consensus 129 ~~~~~~LkpGG~lv~~~~~~------------------~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 129 ELCLPLLKPGGRFLALKGRD------------------PEEEIAELPKALGGKVEE 166 (187)
T ss_pred HHHHHhcCCCeEEEEEeCCC------------------hHHHHHHHHHhcCceEee
Confidence 36789999999999986543 123488889988887543
No 371
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=44.21 E-value=88 Score=29.67 Aligned_cols=84 Identities=12% Similarity=0.023 Sum_probs=48.4
Q ss_pred CceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccC
Q 019879 181 YRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 258 (334)
Q Consensus 181 ~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~ 258 (334)
..+||=+|||. |.++..+++ .|+.+ |+.+|..++.++.+.+...+. .. +. -.+.||+|+-. .
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~--v~~~~~~~~rl~~a~~~~~i~-~~---~~---~~~g~Dvvid~--~----- 208 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSP--PAVWETNPRRRDGATGYEVLD-PE---KD---PRRDYRAIYDA--S----- 208 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCce--EEEeCCCHHHHHhhhhccccC-hh---hc---cCCCCCEEEEC--C-----
Confidence 35677778753 445555554 46543 455576666666554432211 10 00 12568888643 1
Q ss_pred cCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 259 KCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 259 ~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.-...+.+..+.|||||.+++.
T Consensus 209 --G~~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 209 --GDPSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred --CCHHHHHHHHHhhhcCcEEEEE
Confidence 1134677888999999999974
No 372
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=43.83 E-value=58 Score=32.99 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=58.4
Q ss_pred ceEeeecccccH--HHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhh--------h--cccCC-CCC-CccceE
Q 019879 182 RNIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHD--------W--CEAFS-TYP-RTYDLI 247 (334)
Q Consensus 182 r~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d--------~--~e~l~-~yp-~sFDlV 247 (334)
.+|-=+|.|+-| +|+.|++.| .+|+++|.+++.++.. .+|.+..+.. . ...+. +.+ ..-|+|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G---~~V~~~D~~~~~v~~l-~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvv 79 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ---KQVIGVDINQHAVDTI-NRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAF 79 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC---CEEEEEeCCHHHHHHH-HCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEE
Confidence 456667888765 667778877 4689999987777653 3343211100 0 00010 011 345666
Q ss_pred EechhhccccCc---------CCHHHHHHHHHHhhcCCeEEEEEeCh--hhHHHHHH
Q 019879 248 HAHGLFSLYKDK---------CNIEDILLEMDRILRPEGAIIIRDEV--DEIIKVKK 293 (334)
Q Consensus 248 ha~~vfs~~~~~---------c~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~ 293 (334)
+.. ++.. ..+..++.++.+.|++|-.+|+..+. ...+++..
T Consensus 80 ii~-----vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~ 131 (415)
T PRK11064 80 LIA-----VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAE 131 (415)
T ss_pred EEE-----cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHH
Confidence 543 2211 23557788899999998888887653 23444443
No 373
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=43.49 E-value=4.7 Score=39.27 Aligned_cols=55 Identities=18% Similarity=0.437 Sum_probs=34.3
Q ss_pred eeEeecccccCCceEEEecCCCCccccccccCCChHHHHHHHHHHHHHHHhhcccccceecc-----eEEEEccC
Q 019879 14 YMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGE-----IAVWQKKV 83 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cw~~~~~~~~-----~~iw~Kp~ 83 (334)
++.|.+|||+|||-+-..-- +..+ .|. ....+-.+.|-.....+... +..+||+.
T Consensus 246 f~kEa~RiLk~gG~l~IAEv----~SRf-------~dv----~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 246 FIKEANRILKPGGLLYIAEV----KSRF-------SDV----KGFVRALTKLGFDVKHKDVSNKYFTLFEFKKTP 305 (325)
T ss_pred HHHHHHHHhccCceEEEEeh----hhhc-------ccH----HHHHHHHHHcCCeeeehhhhcceEEEEEEecCC
Confidence 56799999999998755311 0111 121 12556667788877666554 45677876
No 374
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=43.23 E-value=5.1 Score=37.10 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=20.7
Q ss_pred cCCceeeEeecccccCCceEEEecC
Q 019879 9 FADGRYMIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 9 ~~~g~~l~E~dR~LrpgGy~v~s~p 33 (334)
.+-..+|-++-|+|+|||+|+.+.|
T Consensus 107 ~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 107 PDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEECC
Confidence 4445678889999999999999865
No 375
>PRK07402 precorrin-6B methylase; Provisional
Probab=43.15 E-value=12 Score=33.43 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=17.2
Q ss_pred eeEeecccccCCceEEEecC
Q 019879 14 YMIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~p 33 (334)
+|-++.|+|+|||+|+...+
T Consensus 124 ~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 124 ILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHHHHhcCCCeEEEEEee
Confidence 45678899999999999976
No 376
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=42.78 E-value=50 Score=25.47 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=42.6
Q ss_pred cccHHHHHHHh----CCCcEEEEE-eccCChhhHHHHHHcCccchhh-hhcccCCCCCCccceEEechhhccccCcCCHH
Q 019879 190 GFGGFAAAIQS----SKLWVMNVV-PTLADKNTLGVIYERGLIGIYH-DWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIE 263 (334)
Q Consensus 190 G~G~faa~L~~----~~v~v~nVv-~vD~s~~~L~~a~~Rgli~~~~-d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~ 263 (334)
|+|.++.+|.. .+....+|. ..+.+++.+....++....... +-.+.+ +.-|+|+.. -...++.
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~advvila------v~p~~~~ 75 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAA----QEADVVILA------VKPQQLP 75 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHH----HHTSEEEE-------S-GGGHH
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhh----ccCCEEEEE------ECHHHHH
Confidence 66666666544 442223555 3366766666555543222211 111111 345888665 1234577
Q ss_pred HHHHHHHHhhcCCeEEE
Q 019879 264 DILLEMDRILRPEGAII 280 (334)
Q Consensus 264 ~~L~Em~RVLRPGG~li 280 (334)
.++.++ ..+.+|..++
T Consensus 76 ~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 76 EVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp HHHHHH-HHHHTTSEEE
T ss_pred HHHHHH-hhccCCCEEE
Confidence 899999 7787877664
No 377
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=42.72 E-value=75 Score=30.11 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=50.9
Q ss_pred CceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHH-cCccchh--h--hhcccCCC-CCCccceEEech
Q 019879 181 YRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYE-RGLIGIY--H--DWCEAFST-YPRTYDLIHAHG 251 (334)
Q Consensus 181 ~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~-Rgli~~~--~--d~~e~l~~-yp~sFDlVha~~ 251 (334)
..+||=.|+ |.|.++..+++ .|+ ..|+.++.+++..+.+.+ -|..... . ++.+.+.. .++.+|+|+-.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~--~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~- 231 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGC--SRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDN- 231 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEEC-
Confidence 367888876 45666666665 353 146677766666666554 4532111 1 11111111 12568988643
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. . ...+.+..+.|+|||.++..
T Consensus 232 -~---g-----~~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 232 -V---G-----GEISDTVISQMNENSHIILC 253 (345)
T ss_pred -C---C-----cHHHHHHHHHhccCCEEEEE
Confidence 1 1 12457888999999998863
No 378
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=42.48 E-value=9.2 Score=35.80 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=18.8
Q ss_pred eeeEeecccccCCceEEEecCCC
Q 019879 13 RYMIEVDRVLRPGGYWVLSGPPI 35 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~s~pp~ 35 (334)
.+|-|+-|+|||||.|+++....
T Consensus 164 ~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 164 RVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred HHHHHHHHHcCCCcEEEEEEeec
Confidence 34668889999999999987643
No 379
>PLN02827 Alcohol dehydrogenase-like
Probab=42.38 E-value=52 Score=32.42 Aligned_cols=91 Identities=8% Similarity=-0.068 Sum_probs=51.1
Q ss_pred CceEeeecccccH-HHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hh----hhcccCCC-CCCccceEEech
Q 019879 181 YRNIMDMNAGFGG-FAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YH----DWCEAFST-YPRTYDLIHAHG 251 (334)
Q Consensus 181 ~r~VLD~GCG~G~-faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~----d~~e~l~~-yp~sFDlVha~~ 251 (334)
..+||=.|+|.=+ ++..+++ .|+. .|+.++.++..++.+.+.|.... ++ ++.+.+.- ..+.+|+|+-.
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~--~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~- 270 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGAS--QIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFEC- 270 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEEC-
Confidence 4788888874322 3333443 3532 36777777778888877775211 11 11111110 12358887542
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCC-eEEEEE
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPE-GAIIIR 282 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPG-G~lii~ 282 (334)
. .-...+.+..+.||+| |.+++-
T Consensus 271 ----~----G~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 271 ----V----GDTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred ----C----CChHHHHHHHHhhccCCCEEEEE
Confidence 1 1124677888999999 999764
No 380
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=42.11 E-value=20 Score=35.18 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=33.4
Q ss_pred CceEeeecccccHHHHHHHh--CCCcEEEEEeccCChhhHHHHHH----c-Cc---cchhh--h---hcccCCCCCCccc
Q 019879 181 YRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYE----R-GL---IGIYH--D---WCEAFSTYPRTYD 245 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~--~~v~v~nVv~vD~s~~~L~~a~~----R-gl---i~~~~--d---~~e~l~~yp~sFD 245 (334)
.-++||+|+|.--.-..|.. .+ | ++++.|+++..++.|.+ . +| |...+ + ....+......||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~-W--~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG-W--SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhcC-C--eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceee
Confidence 35899999999864433432 23 4 68999999888876543 2 33 22111 1 0011111227899
Q ss_pred eEEechhhc
Q 019879 246 LIHAHGLFS 254 (334)
Q Consensus 246 lVha~~vfs 254 (334)
+..|+-=|+
T Consensus 180 ftmCNPPFy 188 (299)
T PF05971_consen 180 FTMCNPPFY 188 (299)
T ss_dssp EEEE-----
T ss_pred EEecCCccc
Confidence 999995554
No 381
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=42.06 E-value=99 Score=29.43 Aligned_cols=91 Identities=21% Similarity=0.209 Sum_probs=50.0
Q ss_pred CceEeeecccc-cHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccchh--h--hh---cccCCC-CC-CccceEEe
Q 019879 181 YRNIMDMNAGF-GGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DW---CEAFST-YP-RTYDLIHA 249 (334)
Q Consensus 181 ~r~VLD~GCG~-G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~---~e~l~~-yp-~sFDlVha 249 (334)
..+||=.|+|. |.++..+++. |+. .|+.++.++.....+.+.|....+ + ++ .+.+.. .+ +.||+|+-
T Consensus 163 g~~vlI~g~g~vG~~a~~lak~~G~~--~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld 240 (343)
T cd05285 163 GDTVLVFGAGPIGLLTAAVAKAFGAT--KVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIE 240 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEE
Confidence 46777777654 4455555553 432 156666555666666554431111 1 10 111111 23 45898864
Q ss_pred chhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.. .-...+.++.+.|+++|.++..
T Consensus 241 ~~---------g~~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 241 CT---------GAESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CC---------CCHHHHHHHHHHhhcCCEEEEE
Confidence 31 1124788999999999998864
No 382
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=42.06 E-value=6.4 Score=36.17 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.0
Q ss_pred ceeeEeecccccCCceEEEecC
Q 019879 12 GRYMIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 12 g~~l~E~dR~LrpgGy~v~s~p 33 (334)
..+|-|+-|+|+|||+|+.+-+
T Consensus 141 ~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 141 IALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred HHHHHHHHHhcCCCeEEEEeec
Confidence 4567899999999999999965
No 383
>PLN02688 pyrroline-5-carboxylate reductase
Probab=41.66 E-value=1.3e+02 Score=27.93 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=52.2
Q ss_pred Eeeecccc--cHHHHHHHhCCC-cEEEEEec-cCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCc
Q 019879 184 IMDMNAGF--GGFAAAIQSSKL-WVMNVVPT-LADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 259 (334)
Q Consensus 184 VLD~GCG~--G~faa~L~~~~v-~v~nVv~v-D~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~ 259 (334)
|-=+|||. +.++..|++.+. ....|+.. +.+++..+.+.+.|.. ...+..+. -...|+|+.. ++ .
T Consensus 3 I~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~-~~~~~~e~----~~~aDvVil~-----v~-~ 71 (266)
T PLN02688 3 VGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVK-TAASNTEV----VKSSDVIILA-----VK-P 71 (266)
T ss_pred EEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCE-EeCChHHH----HhcCCEEEEE-----EC-c
Confidence 44467664 346666776653 12245555 6665555555555532 11111111 1345888664 22 3
Q ss_pred CCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHh
Q 019879 260 CNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVG 296 (334)
Q Consensus 260 c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~ 296 (334)
..+..++.++...++||.. +++.... ..+.+++...
T Consensus 72 ~~~~~vl~~l~~~~~~~~~-iIs~~~g~~~~~l~~~~~ 108 (266)
T PLN02688 72 QVVKDVLTELRPLLSKDKL-LVSVAAGITLADLQEWAG 108 (266)
T ss_pred HHHHHHHHHHHhhcCCCCE-EEEecCCCcHHHHHHHcC
Confidence 3567888888777777654 4455332 3445555443
No 384
>PRK13699 putative methylase; Provisional
Probab=41.55 E-value=43 Score=31.17 Aligned_cols=42 Identities=17% Similarity=0.003 Sum_probs=33.7
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 224 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R 224 (334)
....|||-=||+|+.+.+-.+.+ .+..++|+++...+++.+|
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHH
Confidence 45689999999999877766654 3678999998888887776
No 385
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=41.17 E-value=53 Score=28.84 Aligned_cols=41 Identities=17% Similarity=0.063 Sum_probs=29.7
Q ss_pred CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHH
Q 019879 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY 222 (334)
Q Consensus 179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~ 222 (334)
.....|||-=||+|+.+.+-.+.+ .+.+++|+++...++|.
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhc
Confidence 345789999999999776666654 45899999988877765
No 386
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=41.11 E-value=32 Score=32.52 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=17.7
Q ss_pred eeEeecccccCCceEEEecCCC
Q 019879 14 YMIEVDRVLRPGGYWVLSGPPI 35 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~pp~ 35 (334)
+|-+.=++|||||++|||.-.+
T Consensus 181 iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 181 LIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred HHHHHHHhcCCCCEEEEEeCCC
Confidence 4455668999999999997766
No 387
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=40.26 E-value=7.4 Score=34.75 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=18.0
Q ss_pred eeeEeecccccCCceEEEecC
Q 019879 13 RYMIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~s~p 33 (334)
.+|-++.|+|+|||+++++.+
T Consensus 116 ~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 116 QALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred HHHHHHHHHcCCCcEEEEEeC
Confidence 456788999999999999865
No 388
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=40.10 E-value=15 Score=36.79 Aligned_cols=20 Identities=30% Similarity=0.662 Sum_probs=15.8
Q ss_pred eEeecccccCCceEEEecCC
Q 019879 15 MIEVDRVLRPGGYWVLSGPP 34 (334)
Q Consensus 15 l~E~dR~LrpgGy~v~s~pp 34 (334)
|.-|=+.||||||||=+-|-
T Consensus 220 l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 220 LRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred HHHHHhhcCCCcEEEEecCc
Confidence 33455789999999999984
No 389
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=40.09 E-value=1e+02 Score=25.01 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=26.6
Q ss_pred CCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh----hhHHHHHHHH
Q 019879 237 FSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----DEIIKVKKIV 295 (334)
Q Consensus 237 l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~----~~~~~i~~~~ 295 (334)
...+...+|+++++ .++..|+..+.. |++++...- +..++|.+++
T Consensus 43 ~~~~~~~aDiiv~s------------~~l~~~~~~~~~--~~v~~~~~~~d~~ei~~~l~~~L 91 (93)
T COG3414 43 IKALTDGADIIVTS------------TKLADEFEDIPK--GYVVITGNGMDIEEIKQKLLEIL 91 (93)
T ss_pred cccCCCcccEEEEe------------hHhhhhcCcCCC--ceEEEEcccCCHHHHHHHHHHHH
Confidence 34566888999987 234445544433 788777542 3444555444
No 390
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=40.08 E-value=31 Score=36.28 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=62.7
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-c------cchhhhhcccCC-CCC---CccceEE
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L------IGIYHDWCEAFS-TYP---RTYDLIH 248 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-l------i~~~~d~~e~l~-~yp---~sFDlVh 248 (334)
..-+|||.=|++|--+...+..-.-++.|++.|.+++.+..+.+.- + +...+..|..+. .-+ ..||+|+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 4568999999999766555543223578999999988887655431 1 112222222211 122 8999997
Q ss_pred echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
-. + --....+|.-..|-+|-||+|.++-
T Consensus 189 LD------P-yGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 LD------P-YGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cC------C-CCCccHHHHHHHHHhhcCCEEEEEe
Confidence 64 1 1124578888899999999999973
No 391
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=40.04 E-value=32 Score=35.96 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=24.3
Q ss_pred ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHH
Q 019879 182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV 220 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~ 220 (334)
-.|||+|+|||-+...-+..|+- .|++++.=..|...
T Consensus 68 v~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~ 104 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDL 104 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHH
Confidence 46999999999877555554432 36666654455553
No 392
>PRK07680 late competence protein ComER; Validated
Probab=39.59 E-value=91 Score=29.28 Aligned_cols=101 Identities=19% Similarity=0.098 Sum_probs=51.2
Q ss_pred Eeeecccc--cHHHHHHHhCCC-cEEEEEeccCChhhHHHHHHc--CccchhhhhcccCCCCCCccceEEechhhccccC
Q 019879 184 IMDMNAGF--GGFAAAIQSSKL-WVMNVVPTLADKNTLGVIYER--GLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 258 (334)
Q Consensus 184 VLD~GCG~--G~faa~L~~~~v-~v~nVv~vD~s~~~L~~a~~R--gli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~ 258 (334)
|.=+|||. +.++..|.+.+. ...+|+..+.+++......++ |. ....+..+ .....|+|+.. .+
T Consensus 3 I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~-~~~~~~~~----~~~~aDiVila-----v~- 71 (273)
T PRK07680 3 IGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGI-HVAKTIEE----VISQSDLIFIC-----VK- 71 (273)
T ss_pred EEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCe-EEECCHHH----HHHhCCEEEEe-----cC-
Confidence 44567765 335666666652 223466666665555444333 22 11111111 11456888654 12
Q ss_pred cCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHh
Q 019879 259 KCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVG 296 (334)
Q Consensus 259 ~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~ 296 (334)
...+..++.++...|+++.. +++-.. -.++.++..+.
T Consensus 72 p~~~~~vl~~l~~~l~~~~~-iis~~ag~~~~~L~~~~~ 109 (273)
T PRK07680 72 PLDIYPLLQKLAPHLTDEHC-LVSITSPISVEQLETLVP 109 (273)
T ss_pred HHHHHHHHHHHHhhcCCCCE-EEEECCCCCHHHHHHHcC
Confidence 23466778887777877764 444332 23455555543
No 393
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.37 E-value=1.4e+02 Score=29.38 Aligned_cols=105 Identities=13% Similarity=0.152 Sum_probs=55.7
Q ss_pred CCceEeeecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHHHHH-----------cCccch-hhhhcccCCCC-C--C
Q 019879 180 RYRNIMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE-----------RGLIGI-YHDWCEAFSTY-P--R 242 (334)
Q Consensus 180 ~~r~VLD~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~-----------Rgli~~-~~d~~e~l~~y-p--~ 242 (334)
.+++|-=+|+|+ .++|+.++..| .+|+-.|.+++.++.+.+ .|+... ..+-.+....+ . .
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG---~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~ 82 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHG---LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVA 82 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhc
Confidence 357788889984 35677777777 467888888776554322 221100 00000000111 1 3
Q ss_pred ccceEEechhhccccCcCC-HHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHH
Q 019879 243 TYDLIHAHGLFSLYKDKCN-IEDILLEMDRILRPEGAIIIRDEVD-EIIKVKK 293 (334)
Q Consensus 243 sFDlVha~~vfs~~~~~c~-~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~ 293 (334)
.-|+|+- ..+..-+ -..++.|+.++++|+- ++-+.+.. .+.++..
T Consensus 83 ~aDlViE-----avpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~la~ 129 (321)
T PRK07066 83 DADFIQE-----SAPEREALKLELHERISRAAKPDA-IIASSTSGLLPTDFYA 129 (321)
T ss_pred CCCEEEE-----CCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHHHHHH
Confidence 3455543 3332222 2478899999999987 44444433 3444443
No 394
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=39.26 E-value=80 Score=30.64 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=52.7
Q ss_pred CceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h--hhcccCCCC-CCccceEEechhh
Q 019879 181 YRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DWCEAFSTY-PRTYDLIHAHGLF 253 (334)
Q Consensus 181 ~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~~e~l~~y-p~sFDlVha~~vf 253 (334)
..+||=.|+|. |.++..+++ .|+. .++.++.++..+.++.+.|....+ . +..+.+..+ .+.||+|+-..
T Consensus 187 g~~vlI~g~g~vG~~~~~la~~~G~~--~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~-- 262 (365)
T cd08278 187 GSSIAVFGAGAVGLAAVMAAKIAGCT--TIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTT-- 262 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECC--
Confidence 46788887653 334444444 3532 377777777777777665531111 1 111111111 45688886431
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
.-...+.++.+.|+++|.++...
T Consensus 263 -------g~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 263 -------GVPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred -------CCcHHHHHHHHHhccCCEEEEeC
Confidence 01256889999999999998754
No 395
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=39.23 E-value=96 Score=33.26 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=53.1
Q ss_pred ceEeeecccccH--HHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhccc--CCCCC-CccceEEechhhccc
Q 019879 182 RNIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA--FSTYP-RTYDLIHAHGLFSLY 256 (334)
Q Consensus 182 r~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~--l~~yp-~sFDlVha~~vfs~~ 256 (334)
.+|+=+|||.=+ .+..|.+++ .+++-+|.+++.++.+.+.|....+.|-.+. +---. +..|++++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~------ 471 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSG---VKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINA------ 471 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCC---CCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEE------
Confidence 456655555332 223344455 3588999998888888877754333332211 11123 577877764
Q ss_pred cCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 257 KDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 257 ~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
.+..+....+.+..|-+.|.-.++.+.
T Consensus 472 ~~d~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 472 IDDPQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred eCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 112223445556777778888777764
No 396
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=38.69 E-value=1.5e+02 Score=28.00 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=57.0
Q ss_pred CceEeeecccc-c-HHHHHHHhCCCcEEEEEeccCChhhHHHHHHc--------------Cccch--hhhhcccC---CC
Q 019879 181 YRNIMDMNAGF-G-GFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--------------GLIGI--YHDWCEAF---ST 239 (334)
Q Consensus 181 ~r~VLD~GCG~-G-~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R--------------gli~~--~~d~~e~l---~~ 239 (334)
+++|.=+|||+ | +++..|+..|. +|+.+|.+++.++.+.++ |.+.. .....+.+ ..
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~---~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 79 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGY---DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTS 79 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCC
Confidence 46777889884 3 36666777763 688889888777644332 21100 00000000 01
Q ss_pred CC--CccceEEechhhccccCcC-CHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHH
Q 019879 240 YP--RTYDLIHAHGLFSLYKDKC-NIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIV 295 (334)
Q Consensus 240 yp--~sFDlVha~~vfs~~~~~c-~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~ 295 (334)
+. ...|+|+-. ++... ....++.++.++++|+-.| ++.... .+..+...+
T Consensus 80 ~~~~~~aDlViea-----v~e~~~~k~~~~~~l~~~~~~~~il-~S~tsg~~~~~la~~~ 133 (291)
T PRK06035 80 YESLSDADFIVEA-----VPEKLDLKRKVFAELERNVSPETII-ASNTSGIMIAEIATAL 133 (291)
T ss_pred HHHhCCCCEEEEc-----CcCcHHHHHHHHHHHHhhCCCCeEE-EEcCCCCCHHHHHhhc
Confidence 11 445777654 22111 1457888999999887655 454433 455555543
No 397
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=38.58 E-value=7.9 Score=36.72 Aligned_cols=18 Identities=39% Similarity=0.746 Sum_probs=14.7
Q ss_pred eeeEeecccccCCceEEE
Q 019879 13 RYMIEVDRVLRPGGYWVL 30 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~ 30 (334)
..|-|+-|||+|||-++.
T Consensus 137 ~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 137 KALKEMYRVLKPGGRLLV 154 (238)
T ss_pred HHHHHHHHhhcCCeEEEE
Confidence 357799999999996655
No 398
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=38.54 E-value=1e+02 Score=30.98 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=48.7
Q ss_pred EeeecccccH--HHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchh--------h-----hhcccCCCCC---Cccc
Q 019879 184 IMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIY--------H-----DWCEAFSTYP---RTYD 245 (334)
Q Consensus 184 VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--------~-----d~~e~l~~yp---~sFD 245 (334)
|-=+|+|+=| +|..|++.|. +|+++|.+++.++... +|....+ . .-......+. ...|
T Consensus 3 I~vIGlG~~G~~lA~~La~~G~---~V~~~d~~~~~v~~l~-~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLGH---EVTGVDIDQEKVDKLN-KGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred EEEECCCchhHHHHHHHHhcCC---eEEEEECCHHHHHHhh-cCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 3346888654 5666777764 5888888876655433 2211000 0 0000000110 3457
Q ss_pred eEEech-hhcccc---CcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 246 LIHAHG-LFSLYK---DKCNIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 246 lVha~~-vfs~~~---~~c~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
+|+..- .-.+.. +-..+..++.++...|+||-.++...+
T Consensus 79 vvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~ST 121 (411)
T TIGR03026 79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLEST 121 (411)
T ss_pred EEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 765431 000000 001256777888888999877776543
No 399
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=38.18 E-value=1.7e+02 Score=27.66 Aligned_cols=91 Identities=13% Similarity=0.020 Sum_probs=51.1
Q ss_pred CceEeeecccccH-HHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--hh-hcccCC--CCCCccceEEechhh
Q 019879 181 YRNIMDMNAGFGG-FAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--HD-WCEAFS--TYPRTYDLIHAHGLF 253 (334)
Q Consensus 181 ~r~VLD~GCG~G~-faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~d-~~e~l~--~yp~sFDlVha~~vf 253 (334)
..+||=.|+|.=+ ++..+++ .+.. +|+.++.+++.++.+.+.|....+ ++ ..+.+. +..+.||+|+-..
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~--~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~-- 239 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAE--DVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECS-- 239 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECC--
Confidence 4677777765322 3333443 3432 377778777778887776642211 11 011111 1124689886420
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.-...+.+..+.|+++|.+++.
T Consensus 240 -------g~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 240 -------GNTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred -------CCHHHHHHHHHHhhcCCEEEEE
Confidence 1134567888999999999864
No 400
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=37.62 E-value=3e+02 Score=24.90 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=49.7
Q ss_pred CCceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh----hhcccCCC-CC-CccceEEec
Q 019879 180 RYRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DWCEAFST-YP-RTYDLIHAH 250 (334)
Q Consensus 180 ~~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~~e~l~~-yp-~sFDlVha~ 250 (334)
...+||-.|| +.|..++.++. .|. .|+.++.+.+..+.+.+.|....+. +..+.+.. .+ ..+|+++..
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~ 215 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGA---RVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDP 215 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEEC
Confidence 3478999998 24444444444 354 3566666666677766666421111 11111111 12 468888653
Q ss_pred hhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. . ...+.++.+.++++|.++..
T Consensus 216 ~-----g-----~~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 216 V-----G-----GDVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred c-----c-----HHHHHHHHHhhccCCEEEEE
Confidence 1 0 13556778899999988764
No 401
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=37.10 E-value=6.6 Score=38.69 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=19.2
Q ss_pred CCceeeEeecccccCCceEEEecC
Q 019879 10 ADGRYMIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 10 ~~g~~l~E~dR~LrpgGy~v~s~p 33 (334)
+...+|-|+-|+|+|||.++++-+
T Consensus 213 d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 213 NPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 444566778899999999999865
No 402
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=36.43 E-value=8.1 Score=34.70 Aligned_cols=63 Identities=11% Similarity=0.251 Sum_probs=33.6
Q ss_pred eeeEeecccccCCceEEEe-cCC-CCccccc-cccCCChHHHHHHHHHHHHHHHhhcccccceecceEEEEccCC
Q 019879 13 RYMIEVDRVLRPGGYWVLS-GPP-INWKTNY-KAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIAVWQKKVN 84 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~s-~pp-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~cw~~~~~~~~~~iw~Kp~~ 84 (334)
.++-++.|+|+|||+++.- ... ....... ....-+++ +|.++... |+.+.-...+..|.|...
T Consensus 114 ~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~-------el~~~f~~--~~~~~~~e~~~~~~~~~~ 179 (195)
T TIGR00477 114 EIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKED-------ELRQYYAD--WELLKYNEAVGELHATDA 179 (195)
T ss_pred HHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHH-------HHHHHhCC--CeEEEeeccccccccccc
Confidence 3556889999999995432 100 0000000 01122333 34454544 888887777777777654
No 403
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=35.82 E-value=2.5e+02 Score=25.74 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=50.7
Q ss_pred CceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh---hhcccCCCCCCccceEEechhhc
Q 019879 181 YRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH---DWCEAFSTYPRTYDLIHAHGLFS 254 (334)
Q Consensus 181 ~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~---d~~e~l~~yp~sFDlVha~~vfs 254 (334)
..+||=.|+ +.|.++..+++ .++. |+.+..+++..+.+.+.|...... +..+.+..+.+.+|+|+..
T Consensus 143 g~~vlV~ga~g~~g~~~~~~a~~~g~~---v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~d~vl~~---- 215 (320)
T cd08243 143 GDTLLIRGGTSSVGLAALKLAKALGAT---VTATTRSPERAALLKELGADEVVIDDGAIAEQLRAAPGGFDKVLEL---- 215 (320)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCE---EEEEeCCHHHHHHHHhcCCcEEEecCccHHHHHHHhCCCceEEEEC----
Confidence 467777776 45555555555 4544 555555556666666555411111 1111111124568888643
Q ss_pred cccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 255 LYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.. ...+.++.+.|+++|.++..
T Consensus 216 -~~-----~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 216 -VG-----TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred -CC-----hHHHHHHHHHhccCCEEEEE
Confidence 11 24678889999999998864
No 404
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=35.68 E-value=9.9 Score=35.35 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=18.6
Q ss_pred ceeeEeecccccCCceEEEecC
Q 019879 12 GRYMIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 12 g~~l~E~dR~LrpgGy~v~s~p 33 (334)
..+|-|+-|+|+|||+++.+-|
T Consensus 106 ~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 106 ADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred HHHHHHHHHhCCCCcEEEEEcC
Confidence 5567789999999999999854
No 405
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=35.51 E-value=88 Score=29.84 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=31.2
Q ss_pred cCCCCCceEeeecccccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHH
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYE 223 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~ 223 (334)
+.....-++-|=-||.|.+.--|-- ++-...+|.+.|+++++|+.|.+
T Consensus 47 l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~k 95 (246)
T PF11599_consen 47 LEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARK 95 (246)
T ss_dssp SSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHH
T ss_pred hcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHH
Confidence 4445567999999999986543311 22345799999999999986643
No 406
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.29 E-value=1.7e+02 Score=27.64 Aligned_cols=107 Identities=12% Similarity=0.094 Sum_probs=55.0
Q ss_pred ceEeeecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc-----------Cccch--hhhhcccC---CCC-C-
Q 019879 182 RNIMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----------GLIGI--YHDWCEAF---STY-P- 241 (334)
Q Consensus 182 r~VLD~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-----------gli~~--~~d~~e~l---~~y-p- 241 (334)
++|.=+|+|. +++|..|++.+. +|+..|.+++.++.+.++ |.+.. .....+.+ ..+ .
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF---QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 4577788874 236667777763 577788887777654432 11100 00000000 011 1
Q ss_pred -CccceEEechhhccccCcCC-HHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHh
Q 019879 242 -RTYDLIHAHGLFSLYKDKCN-IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVG 296 (334)
Q Consensus 242 -~sFDlVha~~vfs~~~~~c~-~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~ 296 (334)
..-|+|+.. ++...+ ...++.++.+.++|+..++.....-....+.+.++
T Consensus 79 ~~~aD~Vi~a-----vpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~ 130 (288)
T PRK09260 79 VADADLVIEA-----VPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTK 130 (288)
T ss_pred hcCCCEEEEe-----ccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcC
Confidence 445777643 222112 24678889999999765544333323345555443
No 407
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=35.23 E-value=1.3e+02 Score=28.76 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=50.8
Q ss_pred CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh----hhcccCCCC-CCccceEEechh
Q 019879 180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DWCEAFSTY-PRTYDLIHAHGL 252 (334)
Q Consensus 180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~~e~l~~y-p~sFDlVha~~v 252 (334)
...+||-.|+|. |..++.+++ .|+ .+|+.++.+...+..+.+-|....+. .+.+.+..+ ++.+|+|+..
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~-- 250 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGP--ANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDF-- 250 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEEC--
Confidence 347888887642 223333443 343 24666666666777776656421111 111111111 2357888643
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.. -...+.++.|.|+++|.++..
T Consensus 251 ---~g----~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 251 ---VN----NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred ---CC----CHHHHHHHHHHhhcCCeEEEE
Confidence 10 135788999999999999864
No 408
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=35.15 E-value=1.8e+02 Score=28.06 Aligned_cols=86 Identities=21% Similarity=0.181 Sum_probs=50.0
Q ss_pred CCceEeeecccccHH--HHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhcccc
Q 019879 180 RYRNIMDMNAGFGGF--AAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 257 (334)
Q Consensus 180 ~~r~VLD~GCG~G~f--aa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~ 257 (334)
..++|+=+|+|.-+. +..|...|. +|+.+|.++..+..+.+.|...... +.+..+-..+|+|+... +
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga---~V~v~~r~~~~~~~~~~~G~~~~~~---~~l~~~l~~aDiVI~t~-----p 219 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA---NVTVGARKSAHLARITEMGLSPFHL---SELAEEVGKIDIIFNTI-----P 219 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHcCCeeecH---HHHHHHhCCCCEEEECC-----C
Confidence 358999999986553 333444553 5777777766666666655321110 11111115789997641 1
Q ss_pred CcCCHHHHHHHHHHhhcCCeEEE
Q 019879 258 DKCNIEDILLEMDRILRPEGAII 280 (334)
Q Consensus 258 ~~c~~~~~L~Em~RVLRPGG~li 280 (334)
..-+-.|+...++||+.++
T Consensus 220 ----~~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 220 ----ALVLTKEVLSKMPPEALII 238 (296)
T ss_pred ----hhhhhHHHHHcCCCCcEEE
Confidence 1223467778899988766
No 409
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=35.05 E-value=1.1e+02 Score=31.06 Aligned_cols=93 Identities=15% Similarity=0.132 Sum_probs=60.3
Q ss_pred CceEeeecccccHHHHHHH-hCCCcEEEEEeccCChhhHHHHHHcCc------cchhhhhcccCCCC-CCccceEEechh
Q 019879 181 YRNIMDMNAGFGGFAAAIQ-SSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAFSTY-PRTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~-~~~v~v~nVv~vD~s~~~L~~a~~Rgl------i~~~~d~~e~l~~y-p~sFDlVha~~v 252 (334)
..+|||.=+|+|-=+...+ +-+. .-|+..|++++..+.+.+.-. ...++..+..+..- .+.||+|=-.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~--~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD-- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV--VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID-- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc--cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC--
Confidence 6899999999996554443 3332 268999999999988776421 11222223333222 2778877332
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
..-.+..++.-..|-+|-||++.++
T Consensus 129 -----PFGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 129 -----PFGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred -----CCCCCchHHHHHHHHhhcCCEEEEE
Confidence 1123457788888889999999997
No 410
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=34.97 E-value=23 Score=34.61 Aligned_cols=19 Identities=42% Similarity=0.877 Sum_probs=16.2
Q ss_pred eecccccCCceEEEecCCC
Q 019879 17 EVDRVLRPGGYWVLSGPPI 35 (334)
Q Consensus 17 E~dR~LrpgGy~v~s~pp~ 35 (334)
.+.++|+|||++|+||=..
T Consensus 244 ~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 244 DIASLLKPGGYLILSGILE 262 (295)
T ss_dssp HCHHHEEEEEEEEEEEEEG
T ss_pred HHHHhhCCCCEEEEccccH
Confidence 4678999999999999854
No 411
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=34.82 E-value=10 Score=35.42 Aligned_cols=15 Identities=47% Similarity=1.108 Sum_probs=11.6
Q ss_pred eecccccCC-ceEEEe
Q 019879 17 EVDRVLRPG-GYWVLS 31 (334)
Q Consensus 17 E~dR~Lrpg-Gy~v~s 31 (334)
+|||+|||| -||=+.
T Consensus 39 qIeRllrpgstyfnLN 54 (250)
T KOG1150|consen 39 QIERLLRPGSTYFNLN 54 (250)
T ss_pred HHHHHhcCCccccccC
Confidence 689999999 566553
No 412
>PRK11524 putative methyltransferase; Provisional
Probab=34.80 E-value=61 Score=30.93 Aligned_cols=44 Identities=16% Similarity=0.040 Sum_probs=34.7
Q ss_pred CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879 178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER 224 (334)
Q Consensus 178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R 224 (334)
......|||-=||+|+.+.+-.+.+ -+.+|+|++++..++|.+|
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHH
Confidence 3456789999999998766555543 3579999999999999888
No 413
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=34.49 E-value=43 Score=27.89 Aligned_cols=39 Identities=10% Similarity=-0.040 Sum_probs=21.0
Q ss_pred eeccccc--HHHHHHH-hCCCcEEEEEeccCChhhHHHHHHc
Q 019879 186 DMNAGFG--GFAAAIQ-SSKLWVMNVVPTLADKNTLGVIYER 224 (334)
Q Consensus 186 D~GCG~G--~faa~L~-~~~v~v~nVv~vD~s~~~L~~a~~R 224 (334)
|+||+.| ....+++ +...+...|+.++.++.+.+....+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6655553 2222334688999988876654433
No 414
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=34.34 E-value=30 Score=30.94 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=16.0
Q ss_pred eEeecccccCCceEEEecCC
Q 019879 15 MIEVDRVLRPGGYWVLSGPP 34 (334)
Q Consensus 15 l~E~dR~LrpgGy~v~s~pp 34 (334)
|-++-|+|+|||++|++.+.
T Consensus 128 l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 128 ISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred HHHHHHHcCCCcEEEEEeec
Confidence 44667899999999987663
No 415
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=34.34 E-value=1.3e+02 Score=27.89 Aligned_cols=99 Identities=14% Similarity=0.222 Sum_probs=50.7
Q ss_pred eEeeecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc-CccchhhhhcccCCCCCCccceEEechhhccccCc
Q 019879 183 NIMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 259 (334)
Q Consensus 183 ~VLD~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-gli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~ 259 (334)
+|-=+|||. +.++..|.+.+.....|...+-+++..+.+.+. |. ....+..+. -...|+|+-. .+ .
T Consensus 4 ~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~-~~~~~~~~~----~~~advVil~-----v~-~ 72 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGV-RAATDNQEA----AQEADVVVLA-----VK-P 72 (267)
T ss_pred EEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCC-eecCChHHH----HhcCCEEEEE-----cC-H
Confidence 455578876 336666666653223566677766665555443 42 111110111 1456888653 12 2
Q ss_pred CCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHH
Q 019879 260 CNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIV 295 (334)
Q Consensus 260 c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~ 295 (334)
..+..++.++...+ +.++++.... ..+.++..+
T Consensus 73 ~~~~~v~~~l~~~~---~~~vvs~~~gi~~~~l~~~~ 106 (267)
T PRK11880 73 QVMEEVLSELKGQL---DKLVVSIAAGVTLARLERLL 106 (267)
T ss_pred HHHHHHHHHHHhhc---CCEEEEecCCCCHHHHHHhc
Confidence 23556666665544 4577777554 334455544
No 416
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=34.11 E-value=1.5e+02 Score=31.91 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=73.3
Q ss_pred CCccccchhhhhhHHHHHH-HHHHHhhcCC---CCCceEeeecccccHHHHHHHh------CCCcEEEEEeccCChhhHH
Q 019879 150 VSAESYQEDSNKWKKHVNA-YKKINRLLDS---GRYRNIMDMNAGFGGFAAAIQS------SKLWVMNVVPTLADKNTLG 219 (334)
Q Consensus 150 ~~~e~f~~d~~~W~~~v~~-y~~ll~~l~~---~~~r~VLD~GCG~G~faa~L~~------~~v~v~nVv~vD~s~~~L~ 219 (334)
.+.|.|+.|.-.-...-++ +..++..... .+.-.||=+|+|-|-++.+-++ +. +.+.+++-.++++-
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~Rk---VklyavEKNPNAiv 409 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRK---VKLYAVEKNPNAIV 409 (649)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCc---eEEEEEecCcchhh
Confidence 3678899887653322222 1223322221 2256799999999987654432 33 46888888877654
Q ss_pred HHHHcCc---cchhhhhcccCCC--CC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 220 VIYERGL---IGIYHDWCEAFST--YP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 220 ~a~~Rgl---i~~~~d~~e~l~~--yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
....|.. -..++-.-+++-. -| ...|++++-. |..+-+.+--..-|.-+-+.|||.|..|=+.
T Consensus 410 tL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 410 TLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred hhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 4333422 1111101122222 23 6789998763 3333333323456788899999999887654
No 417
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=33.98 E-value=1.9e+02 Score=27.36 Aligned_cols=92 Identities=17% Similarity=0.135 Sum_probs=52.1
Q ss_pred CceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h--hhcccCC--CCCCccceEEechh
Q 019879 181 YRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DWCEAFS--TYPRTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~~e~l~--~yp~sFDlVha~~v 252 (334)
..+||=.|+|. |.++..+++ .|+. .|+.++.+++.+..+.+.|....+ . ++.+.+. +-.+.+|+|+....
T Consensus 164 g~~vlV~~~g~vg~~~~~la~~~G~~--~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 241 (341)
T PRK05396 164 GEDVLITGAGPIGIMAAAVAKHVGAR--HVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSG 241 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCC
Confidence 46777776643 444445554 3531 345556666777777776642211 1 1111111 11256888865210
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
-...+.++.+.|+|+|.++...
T Consensus 242 ---------~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 242 ---------APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred ---------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1457888999999999998874
No 418
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=33.49 E-value=71 Score=31.46 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=55.1
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC--CccceEEechhhccccC
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--RTYDLIHAHGLFSLYKD 258 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp--~sFDlVha~~vfs~~~~ 258 (334)
.....|+|+-.||+.-.|.+++ |-|+++|-- .|.+-..+-|++.... .+.|-+-| +..|-.+|..|=
T Consensus 212 ~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng-~ma~sL~dtg~v~h~r--~DGfk~~P~r~~idWmVCDmVE----- 280 (358)
T COG2933 212 GMWAVDLGACPGGWTYQLVKRN---MRVYAVDNG-PMAQSLMDTGQVTHLR--EDGFKFRPTRSNIDWMVCDMVE----- 280 (358)
T ss_pred CceeeecccCCCccchhhhhcc---eEEEEeccc-hhhhhhhcccceeeee--ccCcccccCCCCCceEEeehhc-----
Confidence 3678999999999999999998 558999976 5766666667654322 12333233 789999998543
Q ss_pred cCCHHHHHHHHHHhhcCC
Q 019879 259 KCNIEDILLEMDRILRPE 276 (334)
Q Consensus 259 ~c~~~~~L~Em~RVLRPG 276 (334)
.+.++-.=|.--|.-|
T Consensus 281 --kP~rv~~li~~Wl~nG 296 (358)
T COG2933 281 --KPARVAALIAKWLVNG 296 (358)
T ss_pred --CcHHHHHHHHHHHHcc
Confidence 2344444444555544
No 419
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=33.16 E-value=12 Score=32.66 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.0
Q ss_pred eeEeecccccCCceEEEecCC
Q 019879 14 YMIEVDRVLRPGGYWVLSGPP 34 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~pp 34 (334)
+|-|+.|+|+|||.+++..+.
T Consensus 122 ~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 122 FLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred HHHhHHHhhCCCCEEEEEEec
Confidence 588899999999999997653
No 420
>PRK08317 hypothetical protein; Provisional
Probab=33.14 E-value=16 Score=32.42 Aligned_cols=20 Identities=45% Similarity=0.712 Sum_probs=16.9
Q ss_pred eeEeecccccCCceEEEecC
Q 019879 14 YMIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~p 33 (334)
+|-++-|+|+|||++++..|
T Consensus 106 ~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 106 ALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred HHHHHHHHhcCCcEEEEEec
Confidence 45578899999999999876
No 421
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=33.02 E-value=10 Score=34.14 Aligned_cols=62 Identities=13% Similarity=0.320 Sum_probs=32.0
Q ss_pred eeeEeecccccCCceEEE-ecCC-CCccccc-cccCCChHHHHHHHHHHHHHHHhhcccccceecceEEEEccC
Q 019879 13 RYMIEVDRVLRPGGYWVL-SGPP-INWKTNY-KAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIAVWQKKV 83 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~-s~pp-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~cw~~~~~~~~~~iw~Kp~ 83 (334)
.++-++-|+|+|||++++ .... -....+. .++.-++++ +.++.+ =|+.+.-...+.++.|+.
T Consensus 115 ~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~e-------l~~~~~--~~~~~~~~~~~~~~~~~~ 179 (197)
T PRK11207 115 GLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGE-------LRRYYE--GWEMVKYNEDVGELHRTD 179 (197)
T ss_pred HHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHH-------HHHHhC--CCeEEEeeCCHHhhcccc
Confidence 456678899999999654 2110 0000000 012222332 333333 377776666677777764
No 422
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.95 E-value=2.1e+02 Score=27.26 Aligned_cols=105 Identities=18% Similarity=0.182 Sum_probs=54.8
Q ss_pred CceEeeecccccH--HHHHHHhCCCcEEEEEeccCChhhHHHHHHc-----Cccch------h---hhhcccCCCCCCcc
Q 019879 181 YRNIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----GLIGI------Y---HDWCEAFSTYPRTY 244 (334)
Q Consensus 181 ~r~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-----gli~~------~---~d~~e~l~~yp~sF 244 (334)
+++|-=+|+|.=+ ++..|+..+. .|+.+|.+++.++.+.++ |.... . ...+.+....-...
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a 80 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGL---QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGA 80 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccC
Confidence 4567778888543 6667777663 577788877766654432 21000 0 00000000001456
Q ss_pred ceEEechhhccccCcC-CHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHH
Q 019879 245 DLIHAHGLFSLYKDKC-NIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKI 294 (334)
Q Consensus 245 DlVha~~vfs~~~~~c-~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~ 294 (334)
|+|+-. ++... ....++.++..+++|+ .+++++... .+..+.+.
T Consensus 81 DlVi~a-----v~~~~~~~~~v~~~l~~~~~~~-~ii~s~tsg~~~~~l~~~ 126 (311)
T PRK06130 81 DLVIEA-----VPEKLELKRDVFARLDGLCDPD-TIFATNTSGLPITAIAQA 126 (311)
T ss_pred CEEEEe-----ccCcHHHHHHHHHHHHHhCCCC-cEEEECCCCCCHHHHHhh
Confidence 887654 22111 2457888888877654 556566544 34444444
No 423
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=32.83 E-value=70 Score=33.76 Aligned_cols=95 Identities=19% Similarity=0.148 Sum_probs=58.2
Q ss_pred CCceEeeecccccHHHHHHHh--CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcc--------------cCC-----
Q 019879 180 RYRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCE--------------AFS----- 238 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~--~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e--------------~l~----- 238 (334)
...+|+=+|||.=+.++.... .|. +|+.+|.+++.++.+.+-|..-...+..+ ++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA---~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA---IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHH
Confidence 457999999998876654433 343 58888988888887776553210001000 000
Q ss_pred CCC---CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEE
Q 019879 239 TYP---RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAII 280 (334)
Q Consensus 239 ~yp---~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~li 280 (334)
.++ ..+|+|+......- ...+.-+..||-+.+|||+.++
T Consensus 240 ~~~e~~~~~DIVI~TalipG---~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPG---KPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHhCCCCEEEECcccCC---CCCCeeehHHHHhhCCCCCEEE
Confidence 022 56999988743321 1123347889999999998876
No 424
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=32.57 E-value=13 Score=36.51 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=18.7
Q ss_pred eeeEeecccccCCceEEEecCCC
Q 019879 13 RYMIEVDRVLRPGGYWVLSGPPI 35 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~s~pp~ 35 (334)
..|.|+-|+|||||.+|++...+
T Consensus 206 ~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 206 EHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred HHHHHHHHhcCCCCEEEEEEEEe
Confidence 35678899999999999976544
No 425
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=32.42 E-value=3.9e+02 Score=24.36 Aligned_cols=92 Identities=17% Similarity=0.162 Sum_probs=47.0
Q ss_pred CCceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccC---CCCCCccceEEechhh
Q 019879 180 RYRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF---STYPRTYDLIHAHGLF 253 (334)
Q Consensus 180 ~~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l---~~yp~sFDlVha~~vf 253 (334)
...+||-.|| +.|.+++.++. .++ +|+.++.+ .....+.+.|....+..-...+ .+..+.+|+|+... -
T Consensus 143 ~g~~vli~g~~g~~g~~~~~la~~~g~---~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~-~ 217 (319)
T cd08267 143 PGQRVLINGASGGVGTFAVQIAKALGA---HVTGVCST-RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAV-G 217 (319)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCC---EEEEEeCH-HHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECC-C
Confidence 3578999997 34555555555 454 35554433 5566666666421111101111 11226689887531 1
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
. ........+. .|+|+|.++...
T Consensus 218 ~------~~~~~~~~~~-~l~~~g~~i~~g 240 (319)
T cd08267 218 N------SPFSLYRASL-ALKPGGRYVSVG 240 (319)
T ss_pred c------hHHHHHHhhh-ccCCCCEEEEec
Confidence 0 1123333333 399999988653
No 426
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=32.10 E-value=2.8e+02 Score=25.92 Aligned_cols=90 Identities=13% Similarity=0.238 Sum_probs=51.1
Q ss_pred CceEeeecc--cccHHHHHHHh-C-CCcEEEEEeccCChhhHHHHHHcCccchh---hhhcccCCCCC-CccceEEechh
Q 019879 181 YRNIMDMNA--GFGGFAAAIQS-S-KLWVMNVVPTLADKNTLGVIYERGLIGIY---HDWCEAFSTYP-RTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GC--G~G~faa~L~~-~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~~---~d~~e~l~~yp-~sFDlVha~~v 252 (334)
..+||=.|+ +.|.++..+++ . |+ +|+.+..+++..+.+.+-|..... .++.+.+.... +.+|+|+-. +
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~---~vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~-~ 224 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGL---TVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSL-T 224 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCC---EEEEEcCcHHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEc-C
Confidence 467777775 55566666665 3 54 456666555666666555531111 01111111122 468888632 0
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.-...+.+..+.|+++|.++..
T Consensus 225 --------~~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 225 --------HTDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred --------CcHHHHHHHHHHhccCCEEEEE
Confidence 0135678999999999998865
No 427
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=32.02 E-value=22 Score=31.45 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.3
Q ss_pred eeEeecccccCCceEEEecC
Q 019879 14 YMIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~p 33 (334)
.|-++-|+|+|||+|++...
T Consensus 128 ~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 128 ALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHHHHHHccCCCEEEEEEc
Confidence 45567899999999999754
No 428
>PLN02740 Alcohol dehydrogenase-like
Probab=31.95 E-value=1.4e+02 Score=29.19 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=51.4
Q ss_pred CceEeeecccccH-HHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--hh----hcccCCCC-CCccceEEech
Q 019879 181 YRNIMDMNAGFGG-FAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--HD----WCEAFSTY-PRTYDLIHAHG 251 (334)
Q Consensus 181 ~r~VLD~GCG~G~-faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~d----~~e~l~~y-p~sFDlVha~~ 251 (334)
..+||=.|||.=+ ++..+++ .|+ ..|+.+|.+++.++.+.+.|....+ ++ +.+.+..+ ++.||+|+-.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~- 275 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGA--SKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFEC- 275 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--CcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC-
Confidence 4678888875322 3333443 343 2477788887888888776642211 11 11111111 1358888543
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCC-eEEEEE
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPE-GAIIIR 282 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPG-G~lii~ 282 (334)
. .-...+.+..+.+|+| |.+++.
T Consensus 276 ----~----G~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 276 ----A----GNVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred ----C----CChHHHHHHHHhhhcCCCEEEEE
Confidence 1 1135677888899997 887764
No 429
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=31.95 E-value=1.7e+02 Score=29.89 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=51.1
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCc
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK 259 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~ 259 (334)
..++|+=+|+|.=|.+.+..-++ ..++|+.+|.++.....+...|.... +.-+.+ ...|+|++..
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~-~Ga~ViV~d~dp~r~~~A~~~G~~v~--~leeal----~~aDVVItaT-------- 258 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARG-MGARVIVTEVDPIRALEAAMDGFRVM--TMEEAA----KIGDIFITAT-------- 258 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhh-CcCEEEEEeCChhhHHHHHhcCCEeC--CHHHHH----hcCCEEEECC--------
Confidence 45799999999865444333322 22467777766544444454453111 111111 4568886631
Q ss_pred CCHHHHHH-HHHHhhcCCeEEEEEeC
Q 019879 260 CNIEDILL-EMDRILRPEGAIIIRDE 284 (334)
Q Consensus 260 c~~~~~L~-Em~RVLRPGG~lii~D~ 284 (334)
.-..++. +....+|||++++..-.
T Consensus 259 -G~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 259 -GNKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred -CCHHHHHHHHHhcCCCCcEEEEECC
Confidence 1134454 58899999999998754
No 430
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=31.92 E-value=12 Score=33.91 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=15.6
Q ss_pred eeEeecccccCCceEEEec
Q 019879 14 YMIEVDRVLRPGGYWVLSG 32 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~ 32 (334)
+|-|+-|+|+|||+++..-
T Consensus 133 ~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 133 VLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred HHHHHHHHcCcCeEEEEEE
Confidence 4557889999999999854
No 431
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=31.79 E-value=21 Score=33.31 Aligned_cols=21 Identities=33% Similarity=0.763 Sum_probs=17.5
Q ss_pred eeeEeecccccCCceEEEecC
Q 019879 13 RYMIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~s~p 33 (334)
+|+==|+++|+|||-||..+=
T Consensus 162 ~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 162 VYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred eehhhHhhccCCCcEEEEEec
Confidence 466668899999999999875
No 432
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=31.74 E-value=4.2e+02 Score=24.55 Aligned_cols=45 Identities=18% Similarity=0.045 Sum_probs=34.1
Q ss_pred CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC
Q 019879 178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG 225 (334)
Q Consensus 178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg 225 (334)
......|||-=+|+|..+.+-...+ .+.+++++++.-.+++.+|.
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~ 264 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRL 264 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHH
Confidence 3445789999999998776665544 34678999988888888774
No 433
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=31.71 E-value=23 Score=35.86 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=18.4
Q ss_pred eeEeecccccCCceEEEecCCC
Q 019879 14 YMIEVDRVLRPGGYWVLSGPPI 35 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~pp~ 35 (334)
+|-+.=|+|||||++|+|---+
T Consensus 350 lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 350 ILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred HHHHHHHhcCCCcEEEEEeCCC
Confidence 5556778999999999998766
No 434
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=31.47 E-value=12 Score=34.77 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=17.5
Q ss_pred eeeEeecccccCCceEEEec
Q 019879 13 RYMIEVDRVLRPGGYWVLSG 32 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~s~ 32 (334)
.+|-|+-|+|+|||.|+++.
T Consensus 145 ~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 145 ALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHHHHHHhcCCCCEEEEEE
Confidence 46778999999999999985
No 435
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=31.26 E-value=32 Score=33.55 Aligned_cols=62 Identities=10% Similarity=0.071 Sum_probs=34.0
Q ss_pred ccccchhhhhhHHHHHHHHHHHhhc-C--CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCCh
Q 019879 152 AESYQEDSNKWKKHVNAYKKINRLL-D--SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADK 215 (334)
Q Consensus 152 ~e~f~~d~~~W~~~v~~y~~ll~~l-~--~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~ 215 (334)
+..|+.-.+.|--.+.-...+...+ + ..+..+|||+|||+|--......++. ..+.-.|.+.
T Consensus 85 p~vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na 149 (282)
T KOG2920|consen 85 PGVYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNA 149 (282)
T ss_pred CceeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhcc--ceeeeEecch
Confidence 3456666677765554322222122 0 12458999999999976555544442 2344445443
No 436
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=31.14 E-value=13 Score=33.96 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=15.7
Q ss_pred eeEeecccccCCceEEEe
Q 019879 14 YMIEVDRVLRPGGYWVLS 31 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s 31 (334)
.|-|+-|+|+|||.||..
T Consensus 147 ~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 147 ALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred HHHHHHHHcCCCCEEEEE
Confidence 567888999999999995
No 437
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=31.08 E-value=12 Score=37.51 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=17.3
Q ss_pred eeeEeecccccCCceEEEecC
Q 019879 13 RYMIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~s~p 33 (334)
.++-++.|+|+|||+++++..
T Consensus 248 ~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 248 TYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred HHHHHHHHHcCCCcEEEEEEc
Confidence 356778899999999999753
No 438
>KOG2555 consensus AICAR transformylase/IMP cyclohydrolase/methylglyoxal synthase [Nucleotide transport and metabolism]
Probab=31.02 E-value=31 Score=35.67 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=56.0
Q ss_pred cccHHHHHHHhCCCcEEEEEeccCChhhHHH-------HHHcCccc-hhhhhcccCCCCC-CccceEEechh-hc--ccc
Q 019879 190 GFGGFAAAIQSSKLWVMNVVPTLADKNTLGV-------IYERGLIG-IYHDWCEAFSTYP-RTYDLIHAHGL-FS--LYK 257 (334)
Q Consensus 190 G~G~faa~L~~~~v~v~nVv~vD~s~~~L~~-------a~~Rgli~-~~~d~~e~l~~yp-~sFDlVha~~v-fs--~~~ 257 (334)
++||.|..|++.|+.|.+|..+.--|+||.- +..-|+.. .....-+++---. +.+|+|+|+.. |- -..
T Consensus 33 aSGGTAk~lrdaG~~V~dVs~iT~fPEMLgGRVKTLHPaVHgGILARdiesd~kdL~e~~i~~vdvVVcNLYPF~etVa~ 112 (588)
T KOG2555|consen 33 ASGGTAKMLRDAGLPVRDVSEITHFPEMLGGRVKTLHPAVHGGILARDIESDEKDLKEQGIDKVDVVVCNLYPFKETVAK 112 (588)
T ss_pred ecCchHHHHHhCCCccchHHhhcCChHHhCCcccccccccccceeeccCchhHHHHHHcCCCeEEEEEEeccchHhhhcC
Confidence 4788899999999888888888777889861 11111110 0000011121233 78999999821 11 112
Q ss_pred CcCCHHHHHHHHHH----hhcC-----CeEEEEEeChhhHH
Q 019879 258 DKCNIEDILLEMDR----ILRP-----EGAIIIRDEVDEII 289 (334)
Q Consensus 258 ~~c~~~~~L~Em~R----VLRP-----GG~lii~D~~~~~~ 289 (334)
..+.++..+.||+= .||- .-..|++|+.++-.
T Consensus 113 pgvtveeaVEnIDIGGvTLLRAAAKNH~rVtiv~dp~DY~~ 153 (588)
T KOG2555|consen 113 PGVTVEEAVENIDIGGVTLLRAAAKNHARVTIVCDPADYDA 153 (588)
T ss_pred CCCcHHHHhhhcccccHHHHHHHHhcCCcEEEEechhHHHH
Confidence 34677788877751 2221 12467777776433
No 439
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=30.82 E-value=36 Score=33.75 Aligned_cols=45 Identities=33% Similarity=0.609 Sum_probs=32.5
Q ss_pred ccCCceEEEecCCCCccccccccCCChHHHHHHHHHHHHHHHhhcccccceecc
Q 019879 22 LRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGE 75 (334)
Q Consensus 22 LrpgGy~v~s~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cw~~~~~~~~ 75 (334)
.|||||.-..+||- +.+|++|.-++ +....|+... =|+.+++-++
T Consensus 164 FraGGyiQie~pph--~v~y~Dfdi~~-eY~~DWdkf~------lf~~vs~v~e 208 (410)
T COG2871 164 FRAGGYIQIEAPPH--TVNYKDFDIPP-EYHEDWDKFN------LFRYVSKVDE 208 (410)
T ss_pred cCCCceEEEecCCc--cccccccCCCh-hHhcchhhhc------hheeeccccH
Confidence 58999999999994 88899898654 4566777543 3666665444
No 440
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=30.67 E-value=1.1e+02 Score=27.02 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=23.2
Q ss_pred CCC-CccceEEechhhccccCcCCHHHHHHH--HHHhhcCCeEEEEEeC
Q 019879 239 TYP-RTYDLIHAHGLFSLYKDKCNIEDILLE--MDRILRPEGAIIIRDE 284 (334)
Q Consensus 239 ~yp-~sFDlVha~~vfs~~~~~c~~~~~L~E--m~RVLRPGG~lii~D~ 284 (334)
+++ ...|++.|.. ..++.. ..+-|||||.+++...
T Consensus 61 ~s~~~~~D~lva~~-----------~~~~~~~~~~~~l~~gg~ii~d~~ 98 (177)
T TIGR02175 61 HSQIYEPDYVVVLD-----------PTLLKTVNVTAGLKEDGILIVNTK 98 (177)
T ss_pred CCccCCCCEEEEcC-----------HHHhCccchhhCcCCCeEEEEECC
Confidence 345 7899998852 122322 4567999999998753
No 441
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=30.52 E-value=2e+02 Score=28.92 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHhhcCCeEEEEEeCh--hhHHHHHHHHh
Q 019879 261 NIEDILLEMDRILRPEGAIIIRDEV--DEIIKVKKIVG 296 (334)
Q Consensus 261 ~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~~~~ 296 (334)
.++.++.++.+ ++||..+++..+. ...+++.+.+.
T Consensus 96 ~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~ 132 (388)
T PRK15057 96 SVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYR 132 (388)
T ss_pred HHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhh
Confidence 35677888888 7888877776553 34455555443
No 442
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=30.51 E-value=2e+02 Score=27.31 Aligned_cols=90 Identities=18% Similarity=0.107 Sum_probs=49.1
Q ss_pred CceEeeeccc-ccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh-----hhcccCCCC-CCccceEEechh
Q 019879 181 YRNIMDMNAG-FGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH-----DWCEAFSTY-PRTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG-~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~-----d~~e~l~~y-p~sFDlVha~~v 252 (334)
..+||=.||| .|.++..+++ .++ +|+.++.+.+..+.+.+.|....+. +..+.+..+ ++.+|+|+..
T Consensus 166 ~~~vlV~g~g~vg~~~~~~a~~~G~---~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~-- 240 (345)
T cd08260 166 GEWVAVHGCGGVGLSAVMIASALGA---RVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDA-- 240 (345)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEc--
Confidence 3577777753 2223333443 353 5666666667777776656422111 111111111 1368888653
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. . -...+.+..|.|+++|.++..
T Consensus 241 ~---g----~~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 241 L---G----IPETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred C---C----CHHHHHHHHHHhhcCCEEEEe
Confidence 1 0 034677889999999998864
No 443
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.33 E-value=27 Score=31.69 Aligned_cols=24 Identities=33% Similarity=0.650 Sum_probs=19.7
Q ss_pred eEeecccccCCceEEEecCCCCcc
Q 019879 15 MIEVDRVLRPGGYWVLSGPPINWK 38 (334)
Q Consensus 15 l~E~dR~LrpgGy~v~s~pp~~~~ 38 (334)
|.|--|+||||||.-.+-|-.+..
T Consensus 69 lkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 69 LKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred HHHHHHHhCcCcEEEEEcCCcchh
Confidence 556779999999999999976544
No 444
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=30.23 E-value=1.4e+02 Score=26.55 Aligned_cols=121 Identities=15% Similarity=0.179 Sum_probs=64.6
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhccc--CC-CCCCccceEEechhhcccc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA--FS-TYPRTYDLIHAHGLFSLYK 257 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~--l~-~yp~sFDlVha~~vfs~~~ 257 (334)
..+|+=|||=+-. .+|.+......++.-.|....--.. ...+.. .+ |-.++ ++ .+.++||+|++.==| +.
T Consensus 26 ~~~iaclstPsl~--~~l~~~~~~~~~~~Lle~D~RF~~~-~~~~F~-fy-D~~~p~~~~~~l~~~~d~vv~DPPF--l~ 98 (162)
T PF10237_consen 26 DTRIACLSTPSLY--EALKKESKPRIQSFLLEYDRRFEQF-GGDEFV-FY-DYNEPEELPEELKGKFDVVVIDPPF--LS 98 (162)
T ss_pred CCEEEEEeCcHHH--HHHHhhcCCCccEEEEeecchHHhc-CCcceE-EC-CCCChhhhhhhcCCCceEEEECCCC--CC
Confidence 4789999887654 3444411122567777776332111 101111 11 11111 21 134899999997333 21
Q ss_pred CcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEecCCCC
Q 019879 258 DKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDG 310 (334)
Q Consensus 258 ~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~~~~~ 310 (334)
. .-+.++..-+.-++||++.+++.....+.+.|++++ .++=-.-.+.|+++
T Consensus 99 ~-ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~ll-~~~~~~f~p~h~~~ 149 (162)
T PF10237_consen 99 E-ECLTKTAETIRLLLKPGGKIILCTGEEMEELIKKLL-GLRMCDFQPEHPNN 149 (162)
T ss_pred H-HHHHHHHHHHHHHhCccceEEEecHHHHHHHHHHHh-CeeEEeEEeccccC
Confidence 1 113455555666668999999999887767777776 33332334445543
No 445
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.23 E-value=2.7e+02 Score=26.16 Aligned_cols=105 Identities=15% Similarity=0.207 Sum_probs=57.6
Q ss_pred ceEeeecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHH-----------HHHcCccchhh--hhcccC---CCCC--
Q 019879 182 RNIMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGV-----------IYERGLIGIYH--DWCEAF---STYP-- 241 (334)
Q Consensus 182 r~VLD~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~-----------a~~Rgli~~~~--d~~e~l---~~yp-- 241 (334)
++|-=+|+|+ +.++..|+..+. +|+.+|.+++.++. +.++|.+...+ .....+ ..+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~---~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 80 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY---DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDL 80 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC---ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence 4566678874 457777777774 67888888777643 23344221100 000000 1122
Q ss_pred CccceEEechhhccccC-cCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHH
Q 019879 242 RTYDLIHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIV 295 (334)
Q Consensus 242 ~sFDlVha~~vfs~~~~-~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~ 295 (334)
...|+|+-. .+. ..-...++.++.+.++|+-.+ .++... .+..+...+
T Consensus 81 ~~aDlVi~a-----v~e~~~~k~~~~~~l~~~~~~~~il-~s~ts~~~~~~la~~~ 130 (282)
T PRK05808 81 KDADLVIEA-----ATENMDLKKKIFAQLDEIAKPEAIL-ATNTSSLSITELAAAT 130 (282)
T ss_pred ccCCeeeec-----ccccHHHHHHHHHHHHhhCCCCcEE-EECCCCCCHHHHHHhh
Confidence 456777543 211 111248999999999998655 666554 445555543
No 446
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.05 E-value=1.4e+02 Score=28.48 Aligned_cols=105 Identities=13% Similarity=0.175 Sum_probs=55.4
Q ss_pred CceEeeecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHHH-----------HHcCccch--hhhhcccC---CCCC-
Q 019879 181 YRNIMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVI-----------YERGLIGI--YHDWCEAF---STYP- 241 (334)
Q Consensus 181 ~r~VLD~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~a-----------~~Rgli~~--~~d~~e~l---~~yp- 241 (334)
.++|-=+|+|+ +++|..++..|. .|+-.|.+++.++.+ .++|.... .....+.+ ..+.
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 81 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGV---DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD 81 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence 35677788884 346777777763 688888888877653 33443210 00000011 1122
Q ss_pred -CccceEEechhhccccCcCC-HHHHHHHHHHhh-cCCeEEEEEeChhhHHHHHH
Q 019879 242 -RTYDLIHAHGLFSLYKDKCN-IEDILLEMDRIL-RPEGAIIIRDEVDEIIKVKK 293 (334)
Q Consensus 242 -~sFDlVha~~vfs~~~~~c~-~~~~L~Em~RVL-RPGG~lii~D~~~~~~~i~~ 293 (334)
..-|+|+-. +....+ -..++.++.+++ +||-.|+-+...-.+..+..
T Consensus 82 ~~~~d~ViEa-----v~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~ 131 (286)
T PRK07819 82 FADRQLVIEA-----VVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA 131 (286)
T ss_pred hCCCCEEEEe-----cccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence 445666543 222222 247888999998 66655544443334444333
No 447
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=30.05 E-value=2.2e+02 Score=27.39 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=59.0
Q ss_pred ceEeeecccc-cH-HHHHHHhCCCcEEEEEeccCChhhHHHHHHc-Cccch-hhhhcc-cC---CCCC-CccceEEechh
Q 019879 182 RNIMDMNAGF-GG-FAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLIGI-YHDWCE-AF---STYP-RTYDLIHAHGL 252 (334)
Q Consensus 182 r~VLD~GCG~-G~-faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-gli~~-~~d~~e-~l---~~yp-~sFDlVha~~v 252 (334)
.+|+=+|||. |+ ||.+|.+.|. +|+-++-+.+.++.+.++ |+.-. ...... .. .+-+ ..||+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~---~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~-- 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL---PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLA-- 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC---CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEE--
Confidence 3577788885 44 6777776663 567777665567666644 55211 000000 00 0111 578988654
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEE-eChhhHHHHHHHH
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIV 295 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~~~ 295 (334)
.+ --+.+.++..+...+.|+..+++. ......+.+.+.+
T Consensus 78 ---vK-~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~ 117 (305)
T PRK05708 78 ---CK-AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARV 117 (305)
T ss_pred ---CC-HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhC
Confidence 11 124678889999999998866543 3344444555543
No 448
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=29.96 E-value=1.2e+02 Score=28.86 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=50.4
Q ss_pred CceEeeecccccH-HHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--hh-hcccCC-CCC-Cccc-eEEechh
Q 019879 181 YRNIMDMNAGFGG-FAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--HD-WCEAFS-TYP-RTYD-LIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG~G~-faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~d-~~e~l~-~yp-~sFD-lVha~~v 252 (334)
..+||=.|||.=+ ++..+++ .++. .|+.++.+++.++.+.+.|....+ +. ..+.+. ..+ ..+| +|+-.
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~~--~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~-- 236 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGAK--SVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILET-- 236 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEEC--
Confidence 4678888875433 3333333 3532 256777777777777666642111 10 001000 112 4566 54321
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
..-...+.+..+.|||||.+++.-
T Consensus 237 -------~G~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 237 -------AGVPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred -------CCCHHHHHHHHHHhhcCCEEEEEc
Confidence 011457888999999999998863
No 449
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=29.65 E-value=2.1e+02 Score=31.46 Aligned_cols=109 Identities=15% Similarity=0.187 Sum_probs=61.6
Q ss_pred CCceEeeecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHHHHH-----------cCccch--hhhhcccC---CCCC
Q 019879 180 RYRNIMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE-----------RGLIGI--YHDWCEAF---STYP 241 (334)
Q Consensus 180 ~~r~VLD~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~-----------Rgli~~--~~d~~e~l---~~yp 241 (334)
.+++|-=+|+|+ +++|..++..| ..|+-.|.+++.++.+.+ +|.+.. .......+ ..|.
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 410 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKG---LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS 410 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCC---CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH
Confidence 457888899986 34566666666 468889998887764433 232110 00000111 1122
Q ss_pred --CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHH
Q 019879 242 --RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIV 295 (334)
Q Consensus 242 --~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~ 295 (334)
..-|+|+=. +++.+ .--..++.|+.++++|+..|.-.+..-.+..|....
T Consensus 411 ~~~~aDlViEA-v~E~l---~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~ 462 (737)
T TIGR02441 411 GFKNADMVIEA-VFEDL---SLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVS 462 (737)
T ss_pred HhccCCeehhh-ccccH---HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhc
Confidence 345555422 23221 123489999999999997776555544566665543
No 450
>PLN02256 arogenate dehydrogenase
Probab=29.43 E-value=2.4e+02 Score=27.36 Aligned_cols=105 Identities=14% Similarity=0.074 Sum_probs=54.7
Q ss_pred cCCCCCceEeeecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhh
Q 019879 176 LDSGRYRNIMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLF 253 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vf 253 (334)
+......+|.=+|+|. |.++..|.+.+. .|+++|.+. ....+.+.|... +.+..+ + .....|+|+..
T Consensus 31 ~~~~~~~kI~IIG~G~mG~slA~~L~~~G~---~V~~~d~~~-~~~~a~~~gv~~-~~~~~e-~--~~~~aDvVila--- 99 (304)
T PLN02256 31 LEKSRKLKIGIVGFGNFGQFLAKTFVKQGH---TVLATSRSD-YSDIAAELGVSF-FRDPDD-F--CEEHPDVVLLC--- 99 (304)
T ss_pred hccCCCCEEEEEeeCHHHHHHHHHHHhCCC---EEEEEECcc-HHHHHHHcCCee-eCCHHH-H--hhCCCCEEEEe---
Confidence 4445567788889874 346677776663 567777663 334444445321 111111 1 11346887653
Q ss_pred ccccCcCCHHHHHHHH-HHhhcCCeEEEEEeCh---hhHHHHHHHH
Q 019879 254 SLYKDKCNIEDILLEM-DRILRPEGAIIIRDEV---DEIIKVKKIV 295 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em-~RVLRPGG~lii~D~~---~~~~~i~~~~ 295 (334)
.+ ...+..++.++ ...++||. +++.-.. ..++.+++.+
T Consensus 100 --vp-~~~~~~vl~~l~~~~l~~~~-iviDv~SvK~~~~~~~~~~l 141 (304)
T PLN02256 100 --TS-ILSTEAVLRSLPLQRLKRST-LFVDVLSVKEFPKNLLLQVL 141 (304)
T ss_pred --cC-HHHHHHHHHhhhhhccCCCC-EEEecCCchHHHHHHHHHhC
Confidence 12 12356777777 45577775 3333222 2345555554
No 451
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=29.18 E-value=1.6e+02 Score=29.00 Aligned_cols=94 Identities=13% Similarity=0.053 Sum_probs=51.8
Q ss_pred ceEeeecccc-cH-HHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhcccc
Q 019879 182 RNIMDMNAGF-GG-FAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYK 257 (334)
Q Consensus 182 r~VLD~GCG~-G~-faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~ 257 (334)
-+|-=+|||. |. ++..+.+ ..+.+.-+++.|.+...+..+.+.|....+.++-+-+.... ..+|+|+..
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~A------- 77 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDA------- 77 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEEC-------
Confidence 3566788887 44 3444443 34555556666655445566666664332222111111111 458888653
Q ss_pred CcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 258 DKCNIEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 258 ~~c~~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
.....-.|..+.+.+-|..+|...+
T Consensus 78 ---T~a~~H~e~a~~a~eaGk~VID~sP 102 (302)
T PRK08300 78 ---TSAGAHVRHAAKLREAGIRAIDLTP 102 (302)
T ss_pred ---CCHHHHHHHHHHHHHcCCeEEECCc
Confidence 1234556777888888888887653
No 452
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.11 E-value=1.3e+02 Score=27.22 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=29.5
Q ss_pred HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCCh
Q 019879 172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADK 215 (334)
Q Consensus 172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~ 215 (334)
+++.+...+-.+.+|+|.|-|....+-++.+. .+-++++..+
T Consensus 64 VLSll~~n~~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNp 105 (199)
T KOG4058|consen 64 VLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNP 105 (199)
T ss_pred HHHHccCCCCCcEEeccCCCceeehhhhhhCC--CcCCceeccH
Confidence 34445555557999999999998777777663 4567777754
No 453
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=28.51 E-value=15 Score=36.01 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=17.7
Q ss_pred eeeEeecccccCCceEEEecC
Q 019879 13 RYMIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 13 ~~l~E~dR~LrpgGy~v~s~p 33 (334)
.+|.++-|+|+|||.+|++..
T Consensus 207 ~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 207 DHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred HHHHHHHHhcCCCcEEEEEEE
Confidence 457789999999999999853
No 454
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.32 E-value=5.1e+02 Score=24.41 Aligned_cols=40 Identities=20% Similarity=0.127 Sum_probs=26.4
Q ss_pred CceEeeecccccH--HHHHHHhCCCcEEEEEeccCChhhHHHHHH
Q 019879 181 YRNIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLGVIYE 223 (334)
Q Consensus 181 ~r~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~~L~~a~~ 223 (334)
+++|-=+|+|+=| +|..|+..+ .+|+..|.+++.++.+.+
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G---~~V~l~d~~~~~l~~~~~ 44 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHG---FDVTIYDISDEALEKAKE 44 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHH
Confidence 3567778888644 555666666 368888888776665543
No 455
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=28.28 E-value=2e+02 Score=26.71 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=47.6
Q ss_pred Eeeecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCCCccceEEechhhccccCcC
Q 019879 184 IMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 260 (334)
Q Consensus 184 VLD~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c 260 (334)
|-=+|||. +.++..|.+.+..+..+...+-+++..+...++.. .....+..+. -...|+|+.. .+ ..
T Consensus 3 IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~----~~~aDvVila-----v~-p~ 72 (258)
T PRK06476 3 IGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAV----VDRSDVVFLA-----VR-PQ 72 (258)
T ss_pred EEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHH----HHhCCEEEEE-----eC-HH
Confidence 44467664 34566666655332334444555444443333310 1111111111 1346888764 12 23
Q ss_pred CHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhc
Q 019879 261 NIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGG 297 (334)
Q Consensus 261 ~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~ 297 (334)
.+..++.++. +++ |.++++.... .++.+++....
T Consensus 73 ~~~~vl~~l~--~~~-~~~vis~~ag~~~~~l~~~~~~ 107 (258)
T PRK06476 73 IAEEVLRALR--FRP-GQTVISVIAATDRAALLEWIGH 107 (258)
T ss_pred HHHHHHHHhc--cCC-CCEEEEECCCCCHHHHHHHhCC
Confidence 3566776662 456 4566665443 45666666543
No 456
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=28.20 E-value=22 Score=29.51 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=11.0
Q ss_pred EeeecccccHHHHHH
Q 019879 184 IMDMNAGFGGFAAAI 198 (334)
Q Consensus 184 VLD~GCG~G~faa~L 198 (334)
-+|+|||.|....+-
T Consensus 6 NIDIGcG~GNTmda~ 20 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAA 20 (124)
T ss_pred ccccccCCCcchhhh
Confidence 479999999754433
No 457
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=27.99 E-value=31 Score=34.07 Aligned_cols=17 Identities=47% Similarity=1.079 Sum_probs=14.7
Q ss_pred ccccCCceEEEecCCCC
Q 019879 20 RVLRPGGYWVLSGPPIN 36 (334)
Q Consensus 20 R~LrpgGy~v~s~pp~~ 36 (334)
+.|.||||.||++.|-.
T Consensus 237 ~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 237 RALEPGGYLIYTGQPWH 253 (311)
T ss_pred HHhCCCcEEEEcCCCCC
Confidence 57889999999999953
No 458
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=27.97 E-value=14 Score=34.34 Aligned_cols=20 Identities=35% Similarity=0.325 Sum_probs=16.1
Q ss_pred eeEeecccccCCceEEEecC
Q 019879 14 YMIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~p 33 (334)
+|-|+-|+|+|||+++..-.
T Consensus 131 ~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 131 VLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred HHHHHHHHcCCCeEEEEEEE
Confidence 45678899999999987643
No 459
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=27.61 E-value=2e+02 Score=29.64 Aligned_cols=87 Identities=14% Similarity=0.033 Sum_probs=50.8
Q ss_pred CCceEeeecccccHHHHH--HHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhcccc
Q 019879 180 RYRNIMDMNAGFGGFAAA--IQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 257 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~--L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~ 257 (334)
..++|+=+|+|.=|.+.+ ++..| ++|+-+|.++.....+...|.... +.-+.+ ..+|+|+...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G---a~ViV~d~dp~ra~~A~~~G~~v~--~l~eal----~~aDVVI~aT------ 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG---ARVIVTEVDPICALQAAMDGFRVM--TMEEAA----ELGDIFVTAT------ 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC---CEEEEEcCCchhhHHHHhcCCEec--CHHHHH----hCCCEEEECC------
Confidence 357899999886553332 33345 467777776544444444453211 111111 4679987641
Q ss_pred CcCCHHHHHH-HHHHhhcCCeEEEEEeC
Q 019879 258 DKCNIEDILL-EMDRILRPEGAIIIRDE 284 (334)
Q Consensus 258 ~~c~~~~~L~-Em~RVLRPGG~lii~D~ 284 (334)
.-..++. ++.+.+|+|+.++..-.
T Consensus 276 ---G~~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 276 ---GNKDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred ---CCHHHHHHHHHhcCCCCCEEEEcCC
Confidence 1133554 78899999999988644
No 460
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=27.47 E-value=2e+02 Score=27.45 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=45.8
Q ss_pred ecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCcCCHHH
Q 019879 187 MNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIED 264 (334)
Q Consensus 187 ~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~ 264 (334)
+|+|. ..++..|++.+. +|+..|.+++..+.+.+.|... ..+. +.+..-...-|+|+.. +++....+.
T Consensus 6 IGlG~mG~~mA~~L~~~g~---~v~v~dr~~~~~~~~~~~g~~~-~~s~-~~~~~~~~~advVi~~-----vp~~~~~~~ 75 (299)
T PRK12490 6 IGLGKMGGNMAERLREDGH---EVVGYDVNQEAVDVAGKLGITA-RHSL-EELVSKLEAPRTIWVM-----VPAGEVTES 75 (299)
T ss_pred EcccHHHHHHHHHHHhCCC---EEEEEECCHHHHHHHHHCCCee-cCCH-HHHHHhCCCCCEEEEE-----ecCchHHHH
Confidence 56654 336677777764 4666777766666655555321 1110 1110000124777543 343335667
Q ss_pred HHHHHHHhhcCCeEEEEE
Q 019879 265 ILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 265 ~L~Em~RVLRPGG~lii~ 282 (334)
++.++...|+||-.++-.
T Consensus 76 v~~~i~~~l~~g~ivid~ 93 (299)
T PRK12490 76 VIKDLYPLLSPGDIVVDG 93 (299)
T ss_pred HHHHHhccCCCCCEEEEC
Confidence 777777778887665554
No 461
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=27.47 E-value=1.5e+02 Score=28.16 Aligned_cols=102 Identities=10% Similarity=0.100 Sum_probs=58.4
Q ss_pred eEeeecccc--cHHHHHHHhCCC-cEEEEEeccCChhhHHHHHH-cCccchhhhhcccCCCCCCccceEEechhhccccC
Q 019879 183 NIMDMNAGF--GGFAAAIQSSKL-WVMNVVPTLADKNTLGVIYE-RGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 258 (334)
Q Consensus 183 ~VLD~GCG~--G~faa~L~~~~v-~v~nVv~vD~s~~~L~~a~~-Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~ 258 (334)
+|.=+|||. +.++..|.+.+. ...+|...|.+++.++.+.+ .|.. ...+..+ ....-|+|+.. ++
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~-~~~~~~e----~~~~aDiIiLa-----vk- 72 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGIT-ITTNNNE----VANSADILILS-----IK- 72 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcE-EeCCcHH----HHhhCCEEEEE-----eC-
Confidence 456677774 235555666553 23467888887777766554 4531 1111111 01344888654 22
Q ss_pred cCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHh
Q 019879 259 KCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVG 296 (334)
Q Consensus 259 ~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~ 296 (334)
..++..++.++.-.+++ |.++++--.. .++.|++.+.
T Consensus 73 P~~~~~vl~~l~~~~~~-~~lvISi~AGi~i~~l~~~l~ 110 (272)
T PRK12491 73 PDLYSSVINQIKDQIKN-DVIVVTIAAGKSIKSTENEFD 110 (272)
T ss_pred hHHHHHHHHHHHHhhcC-CcEEEEeCCCCcHHHHHHhcC
Confidence 24577888888777765 4677776555 4677777654
No 462
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=27.42 E-value=3.1e+02 Score=24.72 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=49.8
Q ss_pred CceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh----hhcccCCC--CCCccceEEech
Q 019879 181 YRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DWCEAFST--YPRTYDLIHAHG 251 (334)
Q Consensus 181 ~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~~e~l~~--yp~sFDlVha~~ 251 (334)
..+||=.|+ +.|..+..++. .++ .|+.++.+++..+.+.+.|....+. +..+.+.. ..+.+|+|+..
T Consensus 137 g~~vlI~g~~g~~g~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~- 212 (320)
T cd05286 137 GDTVLVHAAAGGVGLLLTQWAKALGA---TVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDG- 212 (320)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCC---EEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEEC-
Confidence 467887785 34444444544 354 4566666666777766655311111 11111111 12568988653
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.. ...+.+..+.|+++|.++..
T Consensus 213 ----~~-----~~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 213 ----VG-----KDTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred ----CC-----cHhHHHHHHhhccCcEEEEE
Confidence 11 13667788999999998864
No 463
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=27.10 E-value=4.8e+02 Score=24.25 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=49.5
Q ss_pred CceEeeecccccHHHHHH---Hh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccc
Q 019879 181 YRNIMDMNAGFGGFAAAI---QS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLY 256 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L---~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~ 256 (334)
..+||=.|+ |.++.++ ++ .|+ .|+.++.+++.++.+.+.|..... +. .. ..-.+.||+|+-. .
T Consensus 156 g~~vlV~g~--g~vg~~~~q~a~~~G~---~vi~~~~~~~~~~~~~~~g~~~~~-~~-~~-~~~~~~~d~vid~--~--- 222 (319)
T cd08242 156 GDKVAVLGD--GKLGLLIAQVLALTGP---DVVLVGRHSEKLALARRLGVETVL-PD-EA-ESEGGGFDVVVEA--T--- 222 (319)
T ss_pred CCEEEEECC--CHHHHHHHHHHHHcCC---eEEEEcCCHHHHHHHHHcCCcEEe-Cc-cc-cccCCCCCEEEEC--C---
Confidence 467777765 4544443 33 454 366666667777877765542211 11 11 1222678988653 1
Q ss_pred cCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 257 KDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 257 ~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.-...+..+.+.|+++|.+++.
T Consensus 223 ----g~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 223 ----GSPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ----CChHHHHHHHHHhhcCCEEEEE
Confidence 0134677888999999999874
No 464
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=27.00 E-value=66 Score=32.72 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=17.0
Q ss_pred eEeecccccCCceEEEecCCC
Q 019879 15 MIEVDRVLRPGGYWVLSGPPI 35 (334)
Q Consensus 15 l~E~dR~LrpgGy~v~s~pp~ 35 (334)
|-+.=|+|||||++|||---+
T Consensus 367 L~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 367 LESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred HHHHHHhcCCCCEEEEEeCCC
Confidence 555678999999999987655
No 465
>PRK06545 prephenate dehydrogenase; Validated
Probab=26.95 E-value=2.9e+02 Score=27.20 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=48.5
Q ss_pred eEeeecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCcC
Q 019879 183 NIMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 260 (334)
Q Consensus 183 ~VLD~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c 260 (334)
+|.=+|+|. |.++..|.+.+.. ..++..|.+...+..+...|.+... ...+...-...|+|+.. .+ ..
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~-v~i~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~aDlVila-----vP-~~ 71 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPD-VFIIGYDPSAAQLARALGFGVIDEL---AADLQRAAAEADLIVLA-----VP-VD 71 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCC-eEEEEeCCCHHHHHHHhcCCCCccc---ccCHHHHhcCCCEEEEe-----CC-HH
Confidence 344456553 3466777777643 3455555543333332222322111 01110011456888765 12 12
Q ss_pred CHHHHHHHHHHh-hcCCeEEEEEeCh----hhHHHHHHH
Q 019879 261 NIEDILLEMDRI-LRPEGAIIIRDEV----DEIIKVKKI 294 (334)
Q Consensus 261 ~~~~~L~Em~RV-LRPGG~lii~D~~----~~~~~i~~~ 294 (334)
.+..++.++... ++|| .+++|.. .+++.++..
T Consensus 72 ~~~~vl~~l~~~~l~~~--~ivtDv~SvK~~i~~~~~~~ 108 (359)
T PRK06545 72 ATAALLAELADLELKPG--VIVTDVGSVKGAILAEAEAL 108 (359)
T ss_pred HHHHHHHHHhhcCCCCC--cEEEeCccccHHHHHHHHHh
Confidence 456788888874 7887 4454533 344455544
No 466
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=26.76 E-value=1.5e+02 Score=28.92 Aligned_cols=91 Identities=14% Similarity=0.062 Sum_probs=49.1
Q ss_pred ceEeeecccccHHH-HHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hh-----hhcccCCC-CC-CccceEEec
Q 019879 182 RNIMDMNAGFGGFA-AAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YH-----DWCEAFST-YP-RTYDLIHAH 250 (334)
Q Consensus 182 r~VLD~GCG~G~fa-a~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~-----d~~e~l~~-yp-~sFDlVha~ 250 (334)
.+||=.|||.=+.+ ..+++ .|+ .+|+.++.+++.+..+.+-|.... ++ ++.+.+.. .+ +.+|+|+..
T Consensus 205 ~~VlV~g~g~vG~~ai~lA~~~G~--~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~ 282 (384)
T cd08265 205 AYVVVYGAGPIGLAAIALAKAAGA--SKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEA 282 (384)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEEC
Confidence 56666666432222 22333 343 246777766666666666664111 11 11111111 22 568988653
Q ss_pred hhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.. .....+.++.|.|+++|.++..
T Consensus 283 --~g------~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 283 --AG------APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred --CC------CcHHHHHHHHHHHHcCCEEEEE
Confidence 11 1235788899999999999865
No 467
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=26.58 E-value=51 Score=29.41 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.7
Q ss_pred eeEeecccccCCceEEEecCC
Q 019879 14 YMIEVDRVLRPGGYWVLSGPP 34 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~pp 34 (334)
+|-|+-|+|+|||.++++...
T Consensus 114 ~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 114 FLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred HHHHHHHHhCCCCEEEEEeCC
Confidence 567899999999999987653
No 468
>PLN02494 adenosylhomocysteinase
Probab=26.35 E-value=1.2e+02 Score=31.79 Aligned_cols=89 Identities=12% Similarity=-0.003 Sum_probs=51.3
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCcC
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC 260 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c 260 (334)
.++|+=+|+|.=|-+.+..-++ ..++|+.++.++.....+...|.... ...+.+ ...|+|++.. .
T Consensus 254 GKtVvViGyG~IGr~vA~~aka-~Ga~VIV~e~dp~r~~eA~~~G~~vv--~leEal----~~ADVVI~tT--------G 318 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKA-AGARVIVTEIDPICALQALMEGYQVL--TLEDVV----SEADIFVTTT--------G 318 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCchhhHHHHhcCCeec--cHHHHH----hhCCEEEECC--------C
Confidence 4789999988655333332222 12578888877544445555554211 111111 4569887631 1
Q ss_pred CHHHHHHHHHHhhcCCeEEEEEeC
Q 019879 261 NIEDILLEMDRILRPEGAIIIRDE 284 (334)
Q Consensus 261 ~~~~~L~Em~RVLRPGG~lii~D~ 284 (334)
...-+..+....+||||.|+..-.
T Consensus 319 t~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 319 NKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CccchHHHHHhcCCCCCEEEEcCC
Confidence 112234788889999999998755
No 469
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=26.31 E-value=2.3e+02 Score=26.32 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=50.9
Q ss_pred CceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hhh-hcccCCCCC-CccceEEechhh
Q 019879 181 YRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YHD-WCEAFSTYP-RTYDLIHAHGLF 253 (334)
Q Consensus 181 ~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~d-~~e~l~~yp-~sFDlVha~~vf 253 (334)
..+||=.|+ +.|.++..+++ .|+ .|+.++.+++.++.+.+.|.... .++ ..+.+..+. +.+|+|+-.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~--- 220 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGY---EVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDP--- 220 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC---eEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEEC---
Confidence 357887887 34444444544 454 45666666667777766564111 111 111111123 558887532
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
. -...+.+..+.|+++|.++..-
T Consensus 221 --~-----g~~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 221 --V-----GGKTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred --C-----cHHHHHHHHHHhhcCCEEEEEe
Confidence 1 1246778999999999988863
No 470
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=25.57 E-value=2.5e+02 Score=26.60 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=49.6
Q ss_pred ecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCcCCHHH
Q 019879 187 MNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIED 264 (334)
Q Consensus 187 ~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~ 264 (334)
+|+|. +.++..|.+.+. +|+..|.+++.++...+.|... ..+..+. -..-|+|+.. +++......
T Consensus 2 IGlG~mG~~mA~~L~~~G~---~V~v~dr~~~~~~~l~~~g~~~-~~s~~~~----~~~advVil~-----vp~~~~~~~ 68 (288)
T TIGR01692 2 IGLGNMGGPMAANLLKAGH---PVRVFDLFPDAVEEAVAAGAQA-AASPAEA----AEGADRVITM-----LPAGQHVIS 68 (288)
T ss_pred CcccHhHHHHHHHHHhCCC---eEEEEeCCHHHHHHHHHcCCee-cCCHHHH----HhcCCEEEEe-----CCChHHHHH
Confidence 35553 235666666663 5677777766666655555321 1111111 1445888664 332233455
Q ss_pred HH---HHHHHhhcCCeEEEEEeCh--hhHHHHHHHHh
Q 019879 265 IL---LEMDRILRPEGAIIIRDEV--DEIIKVKKIVG 296 (334)
Q Consensus 265 ~L---~Em~RVLRPGG~lii~D~~--~~~~~i~~~~~ 296 (334)
++ .++..-++||-.++-..+. +...++.+.+.
T Consensus 69 v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~ 105 (288)
T TIGR01692 69 VYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAA 105 (288)
T ss_pred HHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHH
Confidence 55 4565667777655544332 24455555543
No 471
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=25.52 E-value=3.8e+02 Score=25.09 Aligned_cols=92 Identities=23% Similarity=0.196 Sum_probs=46.0
Q ss_pred CceEeeeccc-ccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch-hh--hhcccCCC-CC-CccceEEechhh
Q 019879 181 YRNIMDMNAG-FGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI-YH--DWCEAFST-YP-RTYDLIHAHGLF 253 (334)
Q Consensus 181 ~r~VLD~GCG-~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~-~~--d~~e~l~~-yp-~sFDlVha~~vf 253 (334)
..+||=.|+| .|.++..|+. .+..+. ++..+.+.+.+..+.+.|.... ++ ++.+.+.. .+ +.+|+++-..
T Consensus 165 g~~vlI~g~g~~g~~~~~la~~~G~~v~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~-- 241 (306)
T cd08258 165 GDTVVVFGPGPIGLLAAQVAKLQGATVV-VVGTEKDEVRLDVAKELGADAVNGGEEDLAELVNEITDGDGADVVIECS-- 241 (306)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEE-EECCCCCHHHHHHHHHhCCcccCCCcCCHHHHHHHHcCCCCCCEEEECC--
Confidence 3566665532 2334444444 354422 2323334345556666664211 11 11111111 22 5688886431
Q ss_pred ccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 254 SLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
. -...+.++.+.|+++|.++..
T Consensus 242 ---g----~~~~~~~~~~~l~~~G~~v~~ 263 (306)
T cd08258 242 ---G----AVPALEQALELLRKGGRIVQV 263 (306)
T ss_pred ---C----ChHHHHHHHHHhhcCCEEEEE
Confidence 0 135788899999999999965
No 472
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.47 E-value=92 Score=31.32 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=52.2
Q ss_pred cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH-cCcc----ch-hhhhcccCCCCCCccceE-E
Q 019879 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE-RGLI----GI-YHDWCEAFSTYPRTYDLI-H 248 (334)
Q Consensus 176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~-Rgli----~~-~~d~~e~l~~yp~sFDlV-h 248 (334)
+.++..--|.=+| |.|.+|..+++. -.+.|+.+|.+..--+.+.+ -|-. .. -.|+.++ +-.+.|.+ |
T Consensus 179 ~~pG~~vgI~GlG-GLGh~aVq~AKA--MG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~---~~~~~dg~~~ 252 (360)
T KOG0023|consen 179 LGPGKWVGIVGLG-GLGHMAVQYAKA--MGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKA---IMKTTDGGID 252 (360)
T ss_pred CCCCcEEEEecCc-ccchHHHHHHHH--hCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHH---HHHhhcCcce
Confidence 4444333344444 488888888774 23678999988534444444 3421 11 1222222 22556643 4
Q ss_pred echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
+...|+ +..|.-+-+.||++|.+++--
T Consensus 253 ~v~~~a--------~~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 253 TVSNLA--------EHALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred eeeecc--------ccchHHHHHHhhcCCEEEEEe
Confidence 433232 235556678999999999863
No 473
>PRK08655 prephenate dehydrogenase; Provisional
Probab=24.95 E-value=3.5e+02 Score=27.69 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=52.3
Q ss_pred eEeeec-cc-ccH-HHHHHHhCCCcEEEEEeccCChhhH-HHHHHcCccchhhhhcccCCCCCCccceEEechhhccccC
Q 019879 183 NIMDMN-AG-FGG-FAAAIQSSKLWVMNVVPTLADKNTL-GVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD 258 (334)
Q Consensus 183 ~VLD~G-CG-~G~-faa~L~~~~v~v~nVv~vD~s~~~L-~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~ 258 (334)
+|.=+| +| .|+ ++..|.+.+. +|+..|.++... ..+.+.|.. ...+..+. -...|+|+..- +
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~---~V~v~~r~~~~~~~~a~~~gv~-~~~~~~e~----~~~aDvVIlav-----p- 67 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF---EVIVTGRDPKKGKEVAKELGVE-YANDNIDA----AKDADIVIISV-----P- 67 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC---EEEEEECChHHHHHHHHHcCCe-eccCHHHH----hccCCEEEEec-----C-
Confidence 344565 45 343 5666666663 566666665553 445555531 11111111 14569887641 1
Q ss_pred cCCHHHHHHHHHHhhcCCeEEEEEeC--hhhHHHHHHHHh
Q 019879 259 KCNIEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIVG 296 (334)
Q Consensus 259 ~c~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~~~~ 296 (334)
......++.++...++||..++-... ....+.+++.+.
T Consensus 68 ~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~ 107 (437)
T PRK08655 68 INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAP 107 (437)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcC
Confidence 12345778888888888774443332 235556666543
No 474
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=24.92 E-value=21 Score=32.48 Aligned_cols=19 Identities=42% Similarity=0.791 Sum_probs=16.9
Q ss_pred eEeecccccCCceEEEecC
Q 019879 15 MIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 15 l~E~dR~LrpgGy~v~s~p 33 (334)
|+++-|||+|||-+.++-|
T Consensus 94 m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 94 MAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred HHHHHHhhccCCeEEEEee
Confidence 6788899999999999876
No 475
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=24.88 E-value=2.4e+02 Score=27.39 Aligned_cols=91 Identities=7% Similarity=-0.018 Sum_probs=50.8
Q ss_pred CceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h----hhcccCCCC-CCccceEEech
Q 019879 181 YRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H----DWCEAFSTY-PRTYDLIHAHG 251 (334)
Q Consensus 181 ~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~----d~~e~l~~y-p~sFDlVha~~ 251 (334)
..+||=.|+|. |.++..+++ .|+ ..|+.++.+++.++.+.+.|....+ . ++.+.+... ++.+|+|+-.
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~~G~--~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~- 263 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKAAGA--SRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFEC- 263 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEEC-
Confidence 46788777642 223444444 343 2477778887788887766642111 1 111111111 1358888542
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCC-eEEEEE
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPE-GAIIIR 282 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPG-G~lii~ 282 (334)
.- -...+.+..+.|||| |.+++.
T Consensus 264 ----~g----~~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 264 ----IG----NVKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred ----CC----ChHHHHHHHHhhccCCCeEEEE
Confidence 11 135777888999997 988764
No 476
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=24.83 E-value=1.1e+02 Score=30.34 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHhhcCCeEEEEEeChhhHHH-HHHHHhcc
Q 019879 261 NIEDILLEMDRILRPEGAIIIRDEVDEIIK-VKKIVGGM 298 (334)
Q Consensus 261 ~~~~~L~Em~RVLRPGG~lii~D~~~~~~~-i~~~~~~l 298 (334)
.++.+|..+..+|+|||.+++-.-+..=++ ++.+++..
T Consensus 219 ~L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f~~~ 257 (310)
T PF01795_consen 219 ELERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFFREL 257 (310)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHHHHh
Confidence 467899999999999999999887653333 44444433
No 477
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=24.54 E-value=3.8e+02 Score=26.51 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=57.0
Q ss_pred CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCC-CCCCccceEEechhhccccCc
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-TYPRTYDLIHAHGLFSLYKDK 259 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~-~yp~sFDlVha~~vfs~~~~~ 259 (334)
.++||=+|--...|...|....+ .|.-.+.+ .........|....+ .-.++ +.+..||+|+.. + -+.+
T Consensus 20 ~~~~l~~~~~~d~~~~~l~~~~~---~~~~~~~~-~~~~~~~~~~~~~~f---~~~~~~~~~~~~d~~~~~--~--pk~k 88 (342)
T PRK09489 20 QRRVLFAGDLQDDLPAQLDAASV---RVHTQQFH-HWQVLSRQMGDNARF---SLVATAEDVADCDTLIYY--W--PKNK 88 (342)
T ss_pred CCcEEEEcCcchhhHHhhhccce---EEehhhhH-HHHHHHhhcCCceEe---ccccCCccCCCCCEEEEE--C--CCCH
Confidence 36789888888888888863221 23332232 111111111211111 11112 223689988653 1 1233
Q ss_pred CCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHh
Q 019879 260 CNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVG 296 (334)
Q Consensus 260 c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~ 296 (334)
...+..|.++.+.|+|||.+++.-.. +.++.+.+.+.
T Consensus 89 ~~~~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~ 126 (342)
T PRK09489 89 QEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLA 126 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHH
Confidence 34678999999999999999887543 34444444433
No 478
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=24.54 E-value=94 Score=30.62 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879 261 NIEDILLEMDRILRPEGAIIIRDEVD 286 (334)
Q Consensus 261 ~~~~~L~Em~RVLRPGG~lii~D~~~ 286 (334)
.++.+|.....+|+|||.+++-.-+.
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 46799999999999999999887664
No 479
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=24.29 E-value=1.9e+02 Score=25.57 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=21.3
Q ss_pred CccceEEechhhccccCcCCHHHHHH--HHHHhhcCCeEEEEEeC
Q 019879 242 RTYDLIHAHGLFSLYKDKCNIEDILL--EMDRILRPEGAIIIRDE 284 (334)
Q Consensus 242 ~sFDlVha~~vfs~~~~~c~~~~~L~--Em~RVLRPGG~lii~D~ 284 (334)
...|+++|..- ..+. .+..-|||||.+++...
T Consensus 65 ~~~D~lva~~~-----------~~~~~~~~~~~l~~gg~vi~ns~ 98 (181)
T PRK08534 65 YEPDYVIVQDP-----------TLLDSVDVTSGLKKDGIIIINTT 98 (181)
T ss_pred CCCCEEEEcCH-----------HHhcchhHhcCcCCCcEEEEECC
Confidence 78899988521 1222 23456999999998753
No 480
>KOG2730 consensus Methylase [General function prediction only]
Probab=24.26 E-value=53 Score=31.44 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=31.3
Q ss_pred CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH
Q 019879 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE 223 (334)
Q Consensus 180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~ 223 (334)
....|+|.-||.||.+...+.++. -|.++|+++--+..|++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~Akh 134 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARH 134 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhc
Confidence 346799999999998888877763 47899998766665544
No 481
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=24.21 E-value=2.7e+02 Score=30.43 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=60.1
Q ss_pred CCceEeeecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHHHHH-----------cCccch--hhhhcccC---CCCC
Q 019879 180 RYRNIMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE-----------RGLIGI--YHDWCEAF---STYP 241 (334)
Q Consensus 180 ~~r~VLD~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~-----------Rgli~~--~~d~~e~l---~~yp 241 (334)
.+++|-=+|+|+ .++|..++..| .+|+-.|.+++.++.+.+ +|.+.. .......+ ..|.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 388 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKG---VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA 388 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH
Confidence 457899999998 45666666666 468888998887764432 232110 00000011 1122
Q ss_pred --CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHH
Q 019879 242 --RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKI 294 (334)
Q Consensus 242 --~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~ 294 (334)
..-|+|+=. +++. ..--..++.|+.++++|+-.|.-.+..-.+.+|...
T Consensus 389 ~~~~aDlViEa-v~E~---l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~ 439 (715)
T PRK11730 389 GFERVDVVVEA-VVEN---PKVKAAVLAEVEQKVREDTILASNTSTISISLLAKA 439 (715)
T ss_pred HhcCCCEEEec-ccCc---HHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhh
Confidence 345655422 2221 112348999999999999555444443355555543
No 482
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=24.12 E-value=22 Score=35.23 Aligned_cols=17 Identities=41% Similarity=1.019 Sum_probs=14.6
Q ss_pred eecccccCCceEEEecC
Q 019879 17 EVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 17 E~dR~LrpgGy~v~s~p 33 (334)
-|-..||||||||-+-|
T Consensus 171 Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 171 NVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp HHHHTEEEEEEEEEEEE
T ss_pred HHHHhcCCCCEEEEEec
Confidence 35678999999999988
No 483
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=24.05 E-value=19 Score=34.39 Aligned_cols=17 Identities=24% Similarity=0.591 Sum_probs=13.9
Q ss_pred eeEeecccccCCceEEE
Q 019879 14 YMIEVDRVLRPGGYWVL 30 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~ 30 (334)
+|-++.|+|+||||+++
T Consensus 205 ~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 205 IIKNMQEHTNPGGYNLI 221 (287)
T ss_pred HHHHHHHhcCCCcEEEE
Confidence 46678899999999665
No 484
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=24.04 E-value=38 Score=34.33 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=17.5
Q ss_pred eeEeecccccCCceEEEecCCC
Q 019879 14 YMIEVDRVLRPGGYWVLSGPPI 35 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~pp~ 35 (334)
+|-+.=++|+|||++|+|.--+
T Consensus 354 iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 354 ILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred HHHHHHHhcCCCCEEEEEeCCC
Confidence 4556778999999999997644
No 485
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=23.72 E-value=2e+02 Score=30.05 Aligned_cols=106 Identities=13% Similarity=0.239 Sum_probs=56.0
Q ss_pred CCceEeeecccc-c-HHHHHHHhCCCcEEEEEeccCChhhHHHH-----------HHcCccchh-----hhhcccCCCCC
Q 019879 180 RYRNIMDMNAGF-G-GFAAAIQSSKLWVMNVVPTLADKNTLGVI-----------YERGLIGIY-----HDWCEAFSTYP 241 (334)
Q Consensus 180 ~~r~VLD~GCG~-G-~faa~L~~~~v~v~nVv~vD~s~~~L~~a-----------~~Rgli~~~-----~d~~e~l~~yp 241 (334)
.+++|-=+|+|+ | ++|..|+..|. .|+-.|.+++.++.+ .++|.+... .+-......+.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~---~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~ 82 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGH---TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALA 82 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH
Confidence 356777788884 3 46777777774 578888888877653 344421110 00000011122
Q ss_pred --CccceEEechhhccccCcCCH-HHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHH
Q 019879 242 --RTYDLIHAHGLFSLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVD-EIIKVKKI 294 (334)
Q Consensus 242 --~sFDlVha~~vfs~~~~~c~~-~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~ 294 (334)
..-|+|+-. ++. ..++ ..++.|+.++++|+-.| .+++.. .+..+...
T Consensus 83 ~~~~aDlViEa-v~E----~~~vK~~vf~~l~~~~~~~ail-asntStl~i~~la~~ 133 (507)
T PRK08268 83 DLADCDLVVEA-IVE----RLDVKQALFAQLEAIVSPDCIL-ATNTSSLSITAIAAA 133 (507)
T ss_pred HhCCCCEEEEc-Ccc----cHHHHHHHHHHHHhhCCCCcEE-EECCCCCCHHHHHhh
Confidence 345777553 222 2222 36778899887776544 444332 33444443
No 486
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=23.48 E-value=2.8e+02 Score=26.80 Aligned_cols=91 Identities=11% Similarity=0.004 Sum_probs=48.8
Q ss_pred CceEeeecccccH-HHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh------hhcccCCC-CCCccceEEech
Q 019879 181 YRNIMDMNAGFGG-FAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH------DWCEAFST-YPRTYDLIHAHG 251 (334)
Q Consensus 181 ~r~VLD~GCG~G~-faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~------d~~e~l~~-yp~sFDlVha~~ 251 (334)
..+||=.|+|.=+ .++.+++ .|+. .|+.++.++..++.+.+.|....+. +..+.+.. .++.||+|+-.
T Consensus 184 g~~vlI~g~g~vG~~a~~~a~~~G~~--~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid~- 260 (365)
T cd05279 184 GSTCAVFGLGGVGLSVIMGCKAAGAS--RIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDYAFEV- 260 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCcEEEEC-
Confidence 3567767764222 2233333 3543 2566665666777766656422211 11111111 13568888643
Q ss_pred hhccccCcCCHHHHHHHHHHhhc-CCeEEEEE
Q 019879 252 LFSLYKDKCNIEDILLEMDRILR-PEGAIIIR 282 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLR-PGG~lii~ 282 (334)
.. -...+.+..+.|+ ++|.++..
T Consensus 261 ----~g----~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 261 ----IG----SADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred ----CC----CHHHHHHHHHHhccCCCEEEEE
Confidence 10 1357888999999 99999875
No 487
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=23.43 E-value=30 Score=34.48 Aligned_cols=20 Identities=45% Similarity=0.557 Sum_probs=16.9
Q ss_pred eeEeecccccCCceEEEecC
Q 019879 14 YMIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~p 33 (334)
.|-|+-|+|+|||.+++.++
T Consensus 197 ~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 197 GIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred HHHHHHHhcCCCcEEEEEEe
Confidence 45678899999999998875
No 488
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=23.21 E-value=2.1e+02 Score=24.81 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=26.2
Q ss_pred CC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879 240 YP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV 285 (334)
Q Consensus 240 yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~ 285 (334)
++ ..+|++++. + +..+.....-|||||.+++....
T Consensus 53 ~~~~~~Dilv~l----------~-~~~~~~~~~~l~~~g~vi~ns~~ 88 (173)
T PF01558_consen 53 PPVGEADILVAL----------D-PEALERHLKGLKPGGVVIINSSL 88 (173)
T ss_dssp S-TSSESEEEES----------S-HHHHHHCGTTCETTEEEEEETTT
T ss_pred cccCCCCEEEEc----------C-HHHHHHHhcCcCcCeEEEEECCC
Confidence 44 899999885 1 24555777889999999998753
No 489
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=22.73 E-value=78 Score=28.67 Aligned_cols=19 Identities=32% Similarity=0.704 Sum_probs=15.4
Q ss_pred eEeecccccCCceEEEecC
Q 019879 15 MIEVDRVLRPGGYWVLSGP 33 (334)
Q Consensus 15 l~E~dR~LrpgGy~v~s~p 33 (334)
+-++-|+|+|||.+++...
T Consensus 200 i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 200 IAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred HHHHHHhcccCCEEEEEEC
Confidence 4567889999999999643
No 490
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=22.71 E-value=7.4e+02 Score=24.38 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=60.6
Q ss_pred CCceEeeecccccH----HHHHHHh---CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechh
Q 019879 180 RYRNIMDMNAGFGG----FAAAIQS---SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGL 252 (334)
Q Consensus 180 ~~r~VLD~GCG~G~----faa~L~~---~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~v 252 (334)
...+||-+|+|.-- -.+-|++ .+.. ++-.|+.. .+.+.. ..+...|..+ ..+..||+|++..-
T Consensus 61 ~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ai---lvDnDi~d----~vSDa~--~~~~~Dc~t~-~~~~k~DlIiSDmY 130 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAI---LVDNDIRD----YVSDAD--QSIVGDCRTY-MPPDKFDLIISDMY 130 (299)
T ss_dssp TT-EEEEES---TTSB-HHHHHHHHHS-TT-E---EEEEESS------B-SSS--EEEES-GGGE-EESS-EEEEEE---
T ss_pred cCcEEEEecccccCCcCCchHHHHHhCCCCcE---EEecchhh----hccccC--Cceecccccc-CCCCcccEEEEecc
Confidence 34789999998542 2233333 3432 44445431 212221 1222334432 12499999998733
Q ss_pred hcccc-------CcCCH-HHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEEecCCCCCCCCceEEEEEec
Q 019879 253 FSLYK-------DKCNI-EDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ 323 (334)
Q Consensus 253 fs~~~-------~~c~~-~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~ 323 (334)
=...+ ..... .-+..=|..-|+=||.+.|--+.- .-.++-++++.+-|=.-.-...+.+ ..|.+||+..-
T Consensus 131 d~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~~F~~wt~FcT~VNtS-SSEaFLigiNY 209 (299)
T PF06460_consen 131 DGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMGYFSWWTCFCTAVNTS-SSEAFLIGINY 209 (299)
T ss_dssp -TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHTTEEEEEEEEEGGGTT-SS-EEEEEEEE
T ss_pred cccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHhhcccEEEEecccCcc-ccceeEEeeec
Confidence 10000 01111 123333455788999999976544 3356788888887754332233322 47899998753
No 491
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=22.49 E-value=5.1e+02 Score=24.86 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=48.4
Q ss_pred CceEeeeccc-ccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh----hhcccCC-CCC-CccceEEechh
Q 019879 181 YRNIMDMNAG-FGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DWCEAFS-TYP-RTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG-~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~~e~l~-~yp-~sFDlVha~~v 252 (334)
..+||=.|+| .|.++..+++ .++. .|+.++.+++..+.+.+.|....+. ++.+.+. ..+ +.||+|+..
T Consensus 188 g~~VlI~g~g~vG~~~~~lak~~G~~--~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~-- 263 (367)
T cd08263 188 GETVAVIGVGGVGSSAIQLAKAFGAS--PIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEA-- 263 (367)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEe--
Confidence 4566655553 3334444444 3543 2566666666666665555321111 1111111 112 568988653
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR 282 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~ 282 (334)
.. . ...+.+..+.|+++|.++..
T Consensus 264 ---vg---~-~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 264 ---LG---K-PETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred ---CC---C-HHHHHHHHHHHhcCCEEEEE
Confidence 11 1 13678899999999998865
No 492
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=22.10 E-value=75 Score=30.46 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=23.5
Q ss_pred CceEeeecccccHHHHHHHhCCC----cEEEEEeccCC
Q 019879 181 YRNIMDMNAGFGGFAAAIQSSKL----WVMNVVPTLAD 214 (334)
Q Consensus 181 ~r~VLD~GCG~G~faa~L~~~~v----~v~nVv~vD~s 214 (334)
...++++|||-|.++.++.+.-. ....++-+|-.
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 36899999999999988876311 12345666653
No 493
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=22.07 E-value=23 Score=34.44 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=17.5
Q ss_pred eeEeecccccCCceEEEecCC
Q 019879 14 YMIEVDRVLRPGGYWVLSGPP 34 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~pp 34 (334)
+|-|+-|+|+|||++++.-|.
T Consensus 276 ~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 276 SLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred HHHHHHHHccCCcEEEEEEcC
Confidence 455678999999999998874
No 494
>PF04563 RNA_pol_Rpb2_1: RNA polymerase beta subunit; InterPro: IPR007644 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the protrusion domain []. The other lobe, RNA polymerase Rpb2, domain 2, is nested within this domain.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_B 3LTI_A 3IYD_C 3LU0_C 1SMY_M 3DXJ_M 3AOI_C 2A68_M 1ZYR_C 3AOH_H ....
Probab=21.92 E-value=35 Score=30.96 Aligned_cols=11 Identities=45% Similarity=1.377 Sum_probs=7.4
Q ss_pred CCceEEEecCC
Q 019879 24 PGGYWVLSGPP 34 (334)
Q Consensus 24 pgGy~v~s~pp 34 (334)
||||||..|-.
T Consensus 130 ~GGYFIInG~E 140 (203)
T PF04563_consen 130 PGGYFIINGSE 140 (203)
T ss_dssp --SSEEETTEE
T ss_pred CCCEEEECCCh
Confidence 79999998763
No 495
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=21.90 E-value=2.8e+02 Score=26.92 Aligned_cols=91 Identities=10% Similarity=-0.004 Sum_probs=51.6
Q ss_pred CceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h----hhcccCCCC-CCccceEEech
Q 019879 181 YRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H----DWCEAFSTY-PRTYDLIHAHG 251 (334)
Q Consensus 181 ~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~----d~~e~l~~y-p~sFDlVha~~ 251 (334)
..+||=.|||. |.++..+++ .|+ .+|+.+|.+++.++.+.+.|....+ . ++.+.+... ++.+|+|+-.
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~--~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~- 262 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKA--SRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFEC- 262 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEEC-
Confidence 46788888753 334444544 343 2577888887888888777752211 1 011111001 1357877532
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCC-eEEEEE
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPE-GAIIIR 282 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPG-G~lii~ 282 (334)
. .-...+.+..+.||+| |.+++-
T Consensus 263 ----~----G~~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 263 ----I----GNVNVMRAALECCHKGWGESIII 286 (368)
T ss_pred ----C----CCHHHHHHHHHHhhcCCCeEEEE
Confidence 1 1135677888999997 987764
No 496
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=21.73 E-value=5.5e+02 Score=24.66 Aligned_cols=92 Identities=13% Similarity=0.046 Sum_probs=51.0
Q ss_pred CceEeeeccc-ccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh----hhcccCC-CCC-CccceEEechh
Q 019879 181 YRNIMDMNAG-FGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DWCEAFS-TYP-RTYDLIHAHGL 252 (334)
Q Consensus 181 ~r~VLD~GCG-~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~~e~l~-~yp-~sFDlVha~~v 252 (334)
..+||=.|+| .|.++..+++ .|+. .|+.++.++...+.+.+.|....+. ++.+.+. ..+ +.||+++...
T Consensus 183 g~~vLI~g~g~vG~a~i~lak~~G~~--~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~~- 259 (363)
T cd08279 183 GDTVAVIGCGGVGLNAIQGARIAGAS--RIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAV- 259 (363)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--cEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEcC-
Confidence 4677777764 3444444544 3532 2566666656666665555421111 1111111 122 5689886431
Q ss_pred hccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879 253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD 283 (334)
Q Consensus 253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D 283 (334)
. -...+.++.|.|+++|.++...
T Consensus 260 ----~----~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 260 ----G----RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred ----C----ChHHHHHHHHHhhcCCeEEEEe
Confidence 1 1356789999999999998754
No 497
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=21.64 E-value=2.8e+02 Score=26.83 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=49.5
Q ss_pred CceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--hh----hcccCCCC-CCccceEEech
Q 019879 181 YRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--HD----WCEAFSTY-PRTYDLIHAHG 251 (334)
Q Consensus 181 ~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~d----~~e~l~~y-p~sFDlVha~~ 251 (334)
..+||=.|+|. |.+++.+++ .|+ ..|+.++.++..++.+.+-|..... .+ +.+.+... ++.+|+|+-.
T Consensus 185 g~~vlV~G~g~vG~~~~~~a~~~G~--~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~- 261 (365)
T cd08277 185 GSTVAVFGLGAVGLSAIMGAKIAGA--SRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFEC- 261 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEEC-
Confidence 46777777642 223344444 343 2467777776777777665541111 10 01111101 1458888632
Q ss_pred hhccccCcCCHHHHHHHHHHhhcCC-eEEEEE
Q 019879 252 LFSLYKDKCNIEDILLEMDRILRPE-GAIIIR 282 (334)
Q Consensus 252 vfs~~~~~c~~~~~L~Em~RVLRPG-G~lii~ 282 (334)
.. -...+.+..+.|||| |.+++.
T Consensus 262 ----~g----~~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 262 ----TG----NADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred ----CC----ChHHHHHHHHhcccCCCEEEEE
Confidence 11 135778888999986 888764
No 498
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=21.40 E-value=25 Score=31.84 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=17.2
Q ss_pred eeEeecccccCCceEEEecCC
Q 019879 14 YMIEVDRVLRPGGYWVLSGPP 34 (334)
Q Consensus 14 ~l~E~dR~LrpgGy~v~s~pp 34 (334)
+|-++.|+|+|||+++.+.+.
T Consensus 133 ~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 133 FVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred HHHHHHHHcCCCcEEEEEecC
Confidence 456778999999999998764
No 499
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=21.32 E-value=49 Score=32.10 Aligned_cols=30 Identities=30% Similarity=0.742 Sum_probs=22.6
Q ss_pred eeeceecCCce--eeEeecccccCCceEEEecCC
Q 019879 3 TVSWIIFADGR--YMIEVDRVLRPGGYWVLSGPP 34 (334)
Q Consensus 3 ~v~w~~~~~g~--~l~E~dR~LrpgGy~v~s~pp 34 (334)
-..|| ++|+ ++--+=|+|+|||++|+--.|
T Consensus 180 HLNwg--D~GL~~ff~kis~ll~pgGiLvvEPQp 211 (288)
T KOG2899|consen 180 HLNWG--DDGLRRFFRKISSLLHPGGILVVEPQP 211 (288)
T ss_pred ecccc--cHHHHHHHHHHHHhhCcCcEEEEcCCc
Confidence 34675 5665 445677999999999998776
No 500
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=21.16 E-value=32 Score=30.82 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=42.1
Q ss_pred ceEeeecccccHHHHHHHh----CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhcccc
Q 019879 182 RNIMDMNAGFGGFAAAIQS----SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK 257 (334)
Q Consensus 182 r~VLD~GCG~G~faa~L~~----~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~ 257 (334)
.-||++|=|.|..=-+|++ +.++|++-+- ...++-..- .++-+.|...+-...+..+....-++|+..-+++ +
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l-~~hp~~~P~-~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~-~ 106 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRAL-ACHPSSTPP-EEDLILGDIRETLPALARFGAGAALAHADIGTGD-K 106 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEESS---S-GGG----GGGEEES-HHHHHHHHHHH-S-EEEEEE----S--H
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEeeec-ccCCCCCCc-hHheeeccHHHHhHHHHhcCCceEEEEeecCCCC-c
Confidence 5799999999998778876 3444432111 111111111 1111122211101111224466678888754443 2
Q ss_pred CcCC--HHHHHHHHHHhhcCCeEEEEEeChh
Q 019879 258 DKCN--IEDILLEMDRILRPEGAIIIRDEVD 286 (334)
Q Consensus 258 ~~c~--~~~~L~Em~RVLRPGG~lii~D~~~ 286 (334)
+... ...+--=|..+|.|||+++-.++..
T Consensus 107 ~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 107 EKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred chhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 1111 1123334678999999887666543
Done!