Query 019880
Match_columns 334
No_of_seqs 271 out of 1301
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:29:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 7.5E-50 2.6E-54 383.5 23.7 275 3-299 12-297 (403)
2 1aua_A Phosphatidylinositol tr 100.0 8.2E-48 2.8E-52 354.8 22.3 249 3-268 30-284 (296)
3 3q8g_A CRAL-TRIO domain-contai 100.0 2.6E-48 8.9E-53 361.0 17.5 249 3-267 39-298 (320)
4 3hx3_A Retinaldehyde-binding p 100.0 2.5E-45 8.4E-50 340.8 19.4 231 4-250 59-294 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 5.1E-45 1.7E-49 330.2 18.1 225 3-249 8-234 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.2 1.4E-11 4.6E-16 110.2 8.5 136 85-236 8-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.1 1.9E-10 6.5E-15 104.3 7.4 136 85-236 27-163 (290)
8 2dah_A Ubiquilin-3; UBA domain 77.2 5.5 0.00019 25.8 5.2 28 31-58 20-48 (54)
9 2di0_A Activating signal coint 75.5 4.9 0.00017 27.7 4.7 28 30-57 25-52 (71)
10 1wgl_A TOLL-interacting protei 73.5 6 0.00021 26.2 4.7 28 30-57 21-48 (59)
11 1vej_A Riken cDNA 4931431F19; 71.3 8.9 0.0003 26.6 5.3 27 31-57 40-67 (74)
12 1veg_A NEDD8 ultimate buster-1 70.7 12 0.00041 26.5 6.0 28 31-58 40-67 (83)
13 2dna_A Unnamed protein product 69.7 11 0.00038 25.6 5.4 27 31-57 30-57 (67)
14 1z96_A DNA-damage, UBA-domain 69.7 5.6 0.00019 23.5 3.6 25 31-55 15-39 (40)
15 1ufz_A Hypothetical protein BA 65.2 16 0.00053 25.9 5.5 29 29-57 46-74 (83)
16 1otr_A Protein CUE2; protein-p 63.7 11 0.00039 23.8 4.2 30 28-57 14-43 (49)
17 3e21_A HFAF1, FAS-associated f 62.8 15 0.00052 22.8 4.6 23 32-54 18-41 (45)
18 2cp9_A EF-TS, EF-TSMT, elongat 62.5 11 0.00039 25.3 4.3 41 2-58 8-48 (64)
19 2dam_A ETEA protein; KIAA0887, 61.7 12 0.00041 25.3 4.4 24 33-56 33-56 (67)
20 1wiv_A UBP14, ubiquitin-specif 61.5 17 0.00059 25.0 5.3 27 31-57 40-66 (73)
21 2knz_A Ubiquilin-4; cytoplasm, 60.7 9.6 0.00033 24.4 3.6 27 31-57 22-49 (53)
22 1ify_A HHR23A, UV excision rep 59.6 10 0.00035 23.8 3.5 27 31-57 19-45 (49)
23 2dhy_A CUE domain-containing p 55.3 19 0.00065 24.4 4.5 29 29-57 29-57 (67)
24 1v92_A NSFL1 cofactor P47; 3-h 54.9 12 0.0004 22.9 3.2 25 31-55 17-41 (46)
25 2g3q_A Protein YBL047C; endocy 54.2 13 0.00043 22.5 3.2 26 31-56 15-40 (43)
26 2jy5_A Ubiquilin-1; UBA, alter 54.1 12 0.00043 23.8 3.3 26 31-56 23-49 (52)
27 1wji_A Tudor domain containing 53.3 18 0.00063 24.1 4.1 28 31-58 20-47 (63)
28 1q02_A Sequestosome 1; helical 50.5 15 0.0005 23.5 3.0 22 35-56 27-48 (52)
29 2dal_A Protein KIAA0794; FAS a 48.6 20 0.00067 23.8 3.7 25 31-55 27-51 (62)
30 2d9s_A CBL E3 ubiquitin protei 47.5 30 0.001 22.2 4.2 30 29-58 18-47 (53)
31 2dai_A Ubadc1, ubiquitin assoc 47.3 42 0.0014 23.6 5.5 28 31-58 40-67 (83)
32 1vg5_A RSGI RUH-014, rhomboid 46.9 17 0.00059 25.1 3.2 27 31-57 40-66 (73)
33 2bwb_A Ubiquitin-like protein 45.7 20 0.00069 22.2 3.1 26 31-56 18-44 (46)
34 2ooa_A E3 ubiquitin-protein li 45.1 35 0.0012 21.8 4.1 31 28-58 19-49 (52)
35 1wr1_B Ubiquitin-like protein 44.5 20 0.00068 23.5 3.1 27 31-57 28-55 (58)
36 2dak_A Ubiquitin carboxyl-term 44.0 29 0.001 22.9 4.0 29 31-59 20-48 (63)
37 2dzl_A Protein FAM100B; UBA-li 43.4 26 0.00091 23.5 3.7 25 31-55 29-53 (66)
38 2dag_A Ubiquitin carboxyl-term 43.2 56 0.0019 22.4 5.5 28 31-58 20-48 (74)
39 2oo9_A E3 ubiquitin-protein li 40.9 63 0.0021 20.0 4.9 31 28-58 12-42 (46)
40 1oai_A Nuclear RNA export fact 38.5 42 0.0014 21.9 4.0 28 31-58 19-46 (59)
41 1vdl_A Ubiquitin carboxyl-term 35.7 50 0.0017 22.7 4.0 25 33-57 39-63 (80)
42 2dae_A KIAA0733 protein; mitog 33.2 67 0.0023 21.9 4.3 27 31-57 23-49 (75)
43 2juj_A E3 ubiquitin-protein li 32.1 83 0.0029 20.2 4.4 31 28-58 15-45 (56)
44 1dv0_A DNA repair protein HHR2 30.8 46 0.0016 20.6 3.1 26 30-55 14-39 (47)
45 2cp8_A NEXT to BRCA1 gene 1 pr 30.1 75 0.0026 20.4 4.0 25 33-57 23-47 (54)
46 3sbx_A Putative uncharacterize 29.2 96 0.0033 25.4 5.7 58 172-233 127-189 (189)
47 2cwb_A Chimera of immunoglobul 28.7 50 0.0017 24.6 3.5 27 31-57 77-104 (108)
48 1whc_A RSGI RUH-027, UBA/UBX 3 27.4 72 0.0025 21.1 3.8 28 31-58 20-48 (64)
49 2jp7_A MRNA export factor MEX6 27.3 67 0.0023 20.8 3.5 27 31-57 18-44 (57)
50 1aip_C EF-TS, elongation facto 27.2 95 0.0032 25.7 5.2 41 1-57 1-41 (196)
51 1wj7_A Hypothetical protein (R 27.0 1.6E+02 0.0055 21.6 5.9 27 31-57 51-77 (104)
52 2qho_B E3 ubiquitin-protein li 26.2 1.2E+02 0.0042 18.9 5.2 39 18-56 9-47 (53)
53 2cpw_A CBL-interacting protein 25.4 77 0.0026 20.9 3.6 27 31-57 30-57 (64)
54 1vek_A UBP14, ubiquitin-specif 25.4 1.8E+02 0.006 20.4 5.9 28 31-58 40-68 (84)
55 1wgn_A UBAP1, ubiquitin associ 24.3 70 0.0024 21.2 3.1 28 30-57 29-56 (63)
56 2lva_A Ubiquitin carboxyl-term 29.3 17 0.00058 27.7 0.0 23 35-57 35-57 (129)
57 2oo3_A Protein involved in cat 23.3 29 0.00099 30.6 1.4 32 181-212 233-264 (283)
58 1xb2_B EF-TS, elongation facto 22.9 1.1E+02 0.0039 26.9 5.3 40 2-57 3-42 (291)
59 3qua_A Putative uncharacterize 21.3 1.7E+02 0.0059 24.0 5.8 59 171-233 135-198 (199)
60 2kln_A Probable sulphate-trans 21.2 1.9E+02 0.0066 21.3 5.8 50 150-203 49-98 (130)
61 2ka5_A Putative anti-sigma fac 20.5 1.6E+02 0.0055 21.6 5.2 50 151-204 54-103 (125)
62 2dkl_A Trinucleotide repeat co 20.5 80 0.0027 22.3 3.1 27 31-57 32-58 (85)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=7.5e-50 Score=383.48 Aligned_cols=275 Identities=26% Similarity=0.417 Sum_probs=233.2
Q ss_pred hHHHHHHHHHHHhhccHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCcchhhcCCCCCHHHHH
Q 019880 3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYR 82 (334)
Q Consensus 3 ~~~~i~~lr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~kA~~~l~~~l~wR~~~~id~i~~~~~~~~~l~~ 82 (334)
.+++|++||+++++....+ ...+|.+|+||||||+||+++|.+||+++++||+++++++++. ..+++.
T Consensus 12 q~~~l~~lr~~l~~~~~~l--------~~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~--~~~~~~-- 79 (403)
T 1olm_A 12 QKEALAKFRENVQDVLPAL--------PNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS--WQPPEV-- 79 (403)
T ss_dssp HHHHHHHHHHHHGGGGGGS--------SCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG--SCCCHH--
T ss_pred HHHHHHHHHHHHHhhccCC--------CCCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc--cCCHHH--
Confidence 4688999999999874322 2578999999999999999999999999999999999999886 233443
Q ss_pred HHHhcccccccccCCCCCeEEEEeeCCcCcc----cchHHHHHHHHHHHHHHHHHhcchhhhhhcCCCcceEEEEEeCCC
Q 019880 83 AVRDSQLVGVSGYSKEGLPVIAVGVGLSTHD----KASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTG 158 (334)
Q Consensus 83 ~l~~~~~~~~~g~Dk~G~pV~~~~~g~~~~~----~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~g 158 (334)
+++....+++|+|++||||+++++|.++++ ..+.+++++++++++|...+.. +.++...|.+++++++|+||+|
T Consensus 80 -~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~-~~~s~~~g~~v~~~~~I~D~~g 157 (403)
T 1olm_A 80 -IQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQEC-AHQTTKLGRKVETITIIYDCEG 157 (403)
T ss_dssp -HHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCCCCEEEEEECTT
T ss_pred -HHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHH-HhhHHhhCCcccceEEEEECCC
Confidence 344456678999999999999999998775 3678899999999999876543 4455567878999999999999
Q ss_pred Ccccccch--hHHHHHHHHhhhccCcccccceEEEcCChhhHHHHHHHcccCChhhhcceEEeCCCChhHHHhhCCCCCC
Q 019880 159 LKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASL 236 (334)
Q Consensus 159 ~~l~~~~~--~~~~~~i~~i~~~~YPerl~~i~ivN~P~~f~~~~~~vkpfL~~~t~~KI~i~~~~~~~~L~~~I~~~~L 236 (334)
+++++++. +++++.++.++|++||||++++||||+|++|.++|+++||||+++|++||+|+++++.++|.++||+++|
T Consensus 158 ~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~L 237 (403)
T 1olm_A 158 LGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQV 237 (403)
T ss_dssp CCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGS
T ss_pred CCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhC
Confidence 99999864 5678999999999999999999999999999999999999999999999999987667899999999999
Q ss_pred CcccccCCCCcccccCCCCCCCccc---CCccchHHHHHHHHhhhh--hcccccccccCceeeecCCC
Q 019880 237 PHFCRKEGSGSSRHIGNGTTENCFS---LDHAFHQRLYNYIKQQAV--LTESVVPIRQGSFHVDFPEP 299 (334)
Q Consensus 237 P~~~~~e~GG~~~~~~~~~~~~c~~---~~~p~~~~~y~~i~~~~~--~~~~~~~~~~~~~~~~~~~~ 299 (334)
|++| ||++.+ +++++.|.+ .|+++|+++| ...+.. ..+++.+.+++++.|.+++.
T Consensus 238 P~~y----GG~~~~--~~~~~~c~~~i~~gg~vp~~~~--~~~~~~~~~~~~~~V~~g~~~~v~~~v~ 297 (403)
T 1olm_A 238 PVEY----GGTMTD--PDGNPKCKSKINYGGDIPRKYY--VRDQVKQQYEHSVQISRGSSHQVEYEIL 297 (403)
T ss_dssp BGGG----TSSBCC--TTCCTTCTTTCBCCCCCCGGGC--SCSSCCCCCSEEEEECTTCEEEEEEEEC
T ss_pred chhh----CCCcCC--CCCCcccccccccCCCCCcccc--cCCCcccccceEEEEcCCCEEEEEEEEc
Confidence 9988 999988 789999985 4889999998 554422 22457788888888887765
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=8.2e-48 Score=354.80 Aligned_cols=249 Identities=24% Similarity=0.392 Sum_probs=211.2
Q ss_pred hHHHHHHHHHHHhhccHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCcchhhcCCCCCHHHHH
Q 019880 3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYR 82 (334)
Q Consensus 3 ~~~~i~~lr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~kA~~~l~~~l~wR~~~~id~i~~~~~~~~~l~~ 82 (334)
.+++|++||+++++.+. +...+|.+|+||||||+||+++|.+||+++++||+++++++++.. ..+++ ..
T Consensus 30 q~~~l~~lr~~l~~~~~---------~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~~~~-~~ 98 (296)
T 1aua_A 30 QEKALAELRKLLEDAGF---------IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQD-FHYDE-KP 98 (296)
T ss_dssp HHHHHHHHHHHHHHTTC---------CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHH-CCCTT-HH
T ss_pred HHHHHHHHHHHHHhcCC---------CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhc-cccCc-HH
Confidence 47889999999987652 345789999999999999999999999999999999999988764 22221 13
Q ss_pred HHHhcccccccccCCCCCeEEEEeeCCcCccc----chHHHHHHHHHHHHHHHHHhcchhhhhhcCCCcceEEEEEeCCC
Q 019880 83 AVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTG 158 (334)
Q Consensus 83 ~l~~~~~~~~~g~Dk~G~pV~~~~~g~~~~~~----~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~g 158 (334)
.+++..+.+++|+|++||||+++++|.++++. .+.+++++++++.+|...+..++.++...|.+++++++|+||+|
T Consensus 99 ~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g 178 (296)
T 1aua_A 99 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKG 178 (296)
T ss_dssp HHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred HHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCC
Confidence 45566677899999999999999999987643 46788999999999987766556667777888999999999999
Q ss_pred Ccccccch-hHHHHHHHHhhhccCcccccceEEEcCChhhHHHHHHHcccCChhhhcceEEeCCCChhHHHhhCCCCCCC
Q 019880 159 LKLSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLP 237 (334)
Q Consensus 159 ~~l~~~~~-~~~~~~i~~i~~~~YPerl~~i~ivN~P~~f~~~~~~vkpfL~~~t~~KI~i~~~~~~~~L~~~I~~~~LP 237 (334)
+++++++. +++++.++.++|++||||++++||||+|++|.++|+++||||+++|++||+|+++++.++|.++||+++||
T Consensus 179 ~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP 258 (296)
T 1aua_A 179 ISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLP 258 (296)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSB
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCc
Confidence 99999875 46789999999999999999999999999999999999999999999999999877789999999999999
Q ss_pred cccccCCCCcccccCCCCCCCccc-CCccchH
Q 019880 238 HFCRKEGSGSSRHIGNGTTENCFS-LDHAFHQ 268 (334)
Q Consensus 238 ~~~~~e~GG~~~~~~~~~~~~c~~-~~~p~~~ 268 (334)
++| ||++++ ++.++.|.. ..+|...
T Consensus 259 ~~y----GG~~~~--~~~~~g~~~~~~~~w~~ 284 (296)
T 1aua_A 259 VKF----GGKSEV--DESKGGLYLSDIGPWRD 284 (296)
T ss_dssp GGG----TSCBCC--CGGGCCSTTCCCSGGGC
T ss_pred HHh----CCCCCC--CCCCCCceeCCCCCCCC
Confidence 988 999987 343445754 3456543
No 3
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=2.6e-48 Score=361.00 Aligned_cols=249 Identities=24% Similarity=0.398 Sum_probs=211.4
Q ss_pred hHHHHHHHHHHHhhccHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCcchhhcCCCCCH-H--
Q 019880 3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPA-E-- 79 (334)
Q Consensus 3 ~~~~i~~lr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~kA~~~l~~~l~wR~~~~id~i~~~~~~~~-~-- 79 (334)
.+++|++||+++++.+. ....||.+|+||||||+||+++|.+||+++++||+++++|+++.+ +.++ +
T Consensus 39 q~~~l~~lR~~l~~~~~---------~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~-~~~~~~~~ 108 (320)
T 3q8g_A 39 QEEALLQFRSILLEKNY---------KERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIED-YENNKEAE 108 (320)
T ss_dssp HHHHHHHHHHHHHHTTC---------CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHH-HHHTHHHH
T ss_pred HHHHHHHHHHHHHhcCC---------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccc-cccccccc
Confidence 46889999999998752 245789999999999999999999999999999999999988753 2111 1
Q ss_pred --HHHHHHhcccccccccCCCCCeEEEEeeCCcCccc----chHHHHHHHHHHHHHHHHHhcchhhhhhcCCCcceEEEE
Q 019880 80 --LYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKV 153 (334)
Q Consensus 80 --l~~~l~~~~~~~~~g~Dk~G~pV~~~~~g~~~~~~----~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~I 153 (334)
....+.+.++.+++|+|++||||+|+++|.++++. .+.++++++.++.+|...+..++.+++..|..++++++|
T Consensus 109 ~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~I 188 (320)
T 3q8g_A 109 DKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTV 188 (320)
T ss_dssp HHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEE
T ss_pred hhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEE
Confidence 12346677788999999999999999999988754 366788999999999876655566777788889999999
Q ss_pred EeCCCCcccccch-hHHHHHHHHhhhccCcccccceEEEcCChhhHHHHHHHcccCChhhhcceEEeCCCChhHHHhhCC
Q 019880 154 LDMTGLKLSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMD 232 (334)
Q Consensus 154 iDl~g~~l~~~~~-~~~~~~i~~i~~~~YPerl~~i~ivN~P~~f~~~~~~vkpfL~~~t~~KI~i~~~~~~~~L~~~I~ 232 (334)
+||+|++++++++ +++++.++.++|++||+|++++||||+|++|.++|+++||||+++|++||+|+++++.++|.++||
T Consensus 189 iD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~ 268 (320)
T 3q8g_A 189 LDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIP 268 (320)
T ss_dssp EECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSC
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCC
Confidence 9999999999875 577899999999999999999999999999999999999999999999999998766789999999
Q ss_pred CCCCCcccccCCCCcccccCCCCCCCcccC-Cccch
Q 019880 233 YASLPHFCRKEGSGSSRHIGNGTTENCFSL-DHAFH 267 (334)
Q Consensus 233 ~~~LP~~~~~e~GG~~~~~~~~~~~~c~~~-~~p~~ 267 (334)
+++||++| ||++++. +.++.|... .+|..
T Consensus 269 ~~~LP~~y----GG~~~~~--~~~ggc~~~~~gpw~ 298 (320)
T 3q8g_A 269 IENLPVKY----GGTSVLH--NPNDKFYYSDIGPWR 298 (320)
T ss_dssp GGGSBGGG----TSCBCCS--STTSCGGGBCBSGGG
T ss_pred hhhCChhh----CCCCCCC--CCCCCeecCCCCCCC
Confidence 99999988 9999873 455668633 34553
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=2.5e-45 Score=340.82 Aligned_cols=231 Identities=16% Similarity=0.254 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHhhccHH---HHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCcchhhcCCCCCHHH
Q 019880 4 QEEIKQFQTLMEDLDDS---LKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAEL 80 (334)
Q Consensus 4 ~~~i~~lr~~l~~~~~~---l~~~~~~~~~~~~d~~LlRFLra~~~dv~kA~~~l~~~l~wR~~~~id~i~~~~~~~~~l 80 (334)
+++|++||+|+++.++. |...++......||.+|+||||||+||+++|.+||+++++||++++ .++. .+.++++
T Consensus 59 ~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~--~~~~-~~~~~~i 135 (316)
T 3hx3_A 59 EEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP--ELFD-SLSPEAV 135 (316)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG--GGTT-TCCHHHH
T ss_pred HHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc--hhhc-CCCHHHH
Confidence 57888889988887642 2111111124579999999999999999999999999999999996 2433 3556777
Q ss_pred HHHHHhcccccccccCCCCCeEEEEeeCCcCcccchHHHHHHHHHHHHHHHHHhcchhhhhhcCCCcceEEEEEeCCCCc
Q 019880 81 YRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLK 160 (334)
Q Consensus 81 ~~~l~~~~~~~~~g~Dk~G~pV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~g~~ 160 (334)
...++.+.+.+++|+|++||||+++++|.++++..+.+++++++++++|.... ..+.+++|+++|+||+|++
T Consensus 136 ~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~--------~~~~~v~g~v~IiD~~g~s 207 (316)
T 3hx3_A 136 RCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLE--------NEETQINGFCIIENFKGFT 207 (316)
T ss_dssp HHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTT--------SHHHHHHCEEEEEECTTCC
T ss_pred HHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHh--------cccCCcceEEEEEECCCCC
Confidence 66777778788999999999999999999998888889999999999987531 1223678999999999999
Q ss_pred ccccch--hHHHHHHHHhhhccCcccccceEEEcCChhhHHHHHHHcccCChhhhcceEEeCCCChhHHHhhCCCCCCCc
Q 019880 161 LSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPH 238 (334)
Q Consensus 161 l~~~~~--~~~~~~i~~i~~~~YPerl~~i~ivN~P~~f~~~~~~vkpfL~~~t~~KI~i~~~~~~~~L~~~I~~~~LP~ 238 (334)
++|+++ ++.++.++.++|++||+|++++||||+|++|.++|+++||||+++|++||+|+++ +.++|.++||+++||.
T Consensus 208 l~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~-~~~~L~~~I~~~~LP~ 286 (316)
T 3hx3_A 208 MQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD-DLSGFYQEIDENILPS 286 (316)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET-CCHHHHHHSCGGGSBG
T ss_pred HHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCC-CHHHHHhhCCHhhCcH
Confidence 998754 4678999999999999999999999999999999999999999999999999865 3679999999999999
Q ss_pred ccccCCCCcccc
Q 019880 239 FCRKEGSGSSRH 250 (334)
Q Consensus 239 ~~~~e~GG~~~~ 250 (334)
+| ||++++
T Consensus 287 ey----GG~~~~ 294 (316)
T 3hx3_A 287 DF----GGTLPK 294 (316)
T ss_dssp GG----TSSBCC
T ss_pred hh----CCCCCC
Confidence 88 999864
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=5.1e-45 Score=330.24 Aligned_cols=225 Identities=19% Similarity=0.272 Sum_probs=190.9
Q ss_pred hHHHHHHHHHHHhhccHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCcchhhcCCCCCHHHHH
Q 019880 3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYR 82 (334)
Q Consensus 3 ~~~~i~~lr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~kA~~~l~~~l~wR~~~~id~i~~~~~~~~~l~~ 82 (334)
.+++|++||+++++.+... .+...+|.+|+||||||+||+++|.+||+++++||++++ ++.. .+.++++.+
T Consensus 8 ~~~~l~~lr~~l~~~~~~~------~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~--~i~~-~~~~~~~~~ 78 (262)
T 1r5l_A 8 LQPGLAALRRRAREAGVPL------APLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECP--EISA-DLHPRSIIG 78 (262)
T ss_dssp -CTTHHHHHHHHHHHTCCC------SSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCH--HHHS-CCCGGGTHH
T ss_pred HHHHHHHHHHHHHhCCccc------CCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh--Hhhh-cCChHHHHH
Confidence 4678999999998764311 135678999999999999999999999999999999995 3332 355566666
Q ss_pred HHHhcccccccccCCCCCeEEEEeeCCcCcccchHHHHHHHHHHHHHHHHHhcchhhhhhcCCCcceEEEEEeCCCCccc
Q 019880 83 AVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLS 162 (334)
Q Consensus 83 ~l~~~~~~~~~g~Dk~G~pV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~g~~l~ 162 (334)
.++.+...+++|+|++||||+++++|.++++..+..++++++++++|.... + ...++.|+++|+|++|++++
T Consensus 79 ~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~---~-----~~~~~~g~~~I~D~~g~s~~ 150 (262)
T 1r5l_A 79 LLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQ---E-----VETQRNGIKAIFDLEGWQFS 150 (262)
T ss_dssp HHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTT---S-----HHHHHHCEEEEEECTTCCHH
T ss_pred HHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHh---C-----hhhcccceEEEEECCCCCHH
Confidence 677777778899999999999999999988777788889999988886421 1 11245789999999999999
Q ss_pred ccch--hHHHHHHHHhhhccCcccccceEEEcCChhhHHHHHHHcccCChhhhcceEEeCCCChhHHHhhCCCCCCCccc
Q 019880 163 ALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFC 240 (334)
Q Consensus 163 ~~~~--~~~~~~i~~i~~~~YPerl~~i~ivN~P~~f~~~~~~vkpfL~~~t~~KI~i~~~~~~~~L~~~I~~~~LP~~~ 240 (334)
++++ ++.++.++.++|++|||+++++||||+|++|.++|+++||||+++|++||+|+++++.++|.++|| ++||++|
T Consensus 151 ~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~y 229 (262)
T 1r5l_A 151 HAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEY 229 (262)
T ss_dssp HHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGGG
T ss_pred HHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHhh
Confidence 9864 578899999999999999999999999999999999999999999999999998767899999999 9999988
Q ss_pred ccCCCCccc
Q 019880 241 RKEGSGSSR 249 (334)
Q Consensus 241 ~~e~GG~~~ 249 (334)
||++.
T Consensus 230 ----GG~~~ 234 (262)
T 1r5l_A 230 ----GGEEF 234 (262)
T ss_dssp ----TCSSC
T ss_pred ----CCCCC
Confidence 99873
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.24 E-value=1.4e-11 Score=110.17 Aligned_cols=136 Identities=11% Similarity=0.032 Sum_probs=109.8
Q ss_pred HhcccccccccCCCCCeEEEEeeCCcCcccchHHHHHHHHHHHHHHHHHhcchhhhhhcCCCcceEEEEEeCCCCccccc
Q 019880 85 RDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSAL 164 (334)
Q Consensus 85 ~~~~~~~~~g~Dk~G~pV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~g~~l~~~ 164 (334)
.+...++..|.|++|+||+++..+++.....+.+.++.+.+..++. ++ -..+.+|+|++|++..+.
T Consensus 8 ~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~---~~-----------~~~y~lV~d~T~~~~~n~ 73 (256)
T 3pg7_A 8 KTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKP---YY-----------AKPYEIVVDLTHTGPSNR 73 (256)
T ss_dssp HHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTT---TT-----------TSCEEEEEECTTCCGGGC
T ss_pred HHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHH---hc-----------CCCeEEEEECCCCCcccC
Confidence 3445666779999999999999999877666666666555443331 11 146899999999999888
Q ss_pred chhHHHHHHHHhhhccCcccccceEEEcCChhhHHHHHH-HcccCChhhhcceEEeCCCChhHHHhhCCCCCC
Q 019880 165 NQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKV-VKPLLQERTRRKMQVLQGNGRDELLKIMDYASL 236 (334)
Q Consensus 165 ~~~~~~~~i~~i~~~~YPerl~~i~ivN~P~~f~~~~~~-vkpfL~~~t~~KI~i~~~~~~~~L~~~I~~~~L 236 (334)
+..+.++.+..++...|...++++|++|+++||...|+. .++|.+.+..+|+++++ ..++|.++|+.++|
T Consensus 74 p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~--sl~eL~~~i~~~~L 144 (256)
T 3pg7_A 74 FKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFID--CPGKLAEHIEHEQQ 144 (256)
T ss_dssp CCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEES--STTGGGGTSCGGGC
T ss_pred CcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEEC--CHHHHHhhcCHHHc
Confidence 778899999999999999999999999999999976665 56677778889999987 48899999987765
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.06 E-value=1.9e-10 Score=104.28 Aligned_cols=136 Identities=10% Similarity=0.014 Sum_probs=100.2
Q ss_pred HhcccccccccCCCCCeEEEEeeCCcCcccchHHHHHHHHHHHHHHHHHhcchhhhhhcCCCcceEEEEEeCCCCccccc
Q 019880 85 RDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSAL 164 (334)
Q Consensus 85 ~~~~~~~~~g~Dk~G~pV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~g~~l~~~ 164 (334)
.....++-.|.|++|+||+++..++++....+.+.++.+.+..++. + . -..+.+|+|++|++..+-
T Consensus 27 ~~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~---~--------~---~~~y~lV~D~T~~~~~n~ 92 (290)
T 3peg_A 27 KTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKP---Y--------Y---AKPYEIVVDLTHTGPSNR 92 (290)
T ss_dssp GGTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTT---T--------T---TSCEEEEEECTTCCGGGC
T ss_pred hcCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHH---h--------c---CCCeEEEEEcCCCCccCC
Confidence 3445566668999999999999999877666777666554433221 1 1 147899999999999887
Q ss_pred chhHHHHHHHHhhhccCcccccceEEEcCChhhHHHH-HHHcccCChhhhcceEEeCCCChhHHHhhCCCCCC
Q 019880 165 NQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACW-KVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASL 236 (334)
Q Consensus 165 ~~~~~~~~i~~i~~~~YPerl~~i~ivN~P~~f~~~~-~~vkpfL~~~t~~KI~i~~~~~~~~L~~~I~~~~L 236 (334)
+..++++.+..++...|+..++++|++|+|.+|...+ ...++|.+.+..+|+.+++. ...|..+++++++
T Consensus 93 p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~--~~~L~~~i~~~~~ 163 (290)
T 3peg_A 93 FKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 163 (290)
T ss_dssp CCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS--SCC----------
T ss_pred ChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC--HHHHHhhCCHHHh
Confidence 7788999999999999999999999999999998755 57788888899999998764 4558899987743
No 8
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=77.21 E-value=5.5 Score=25.78 Aligned_cols=28 Identities=21% Similarity=0.110 Sum_probs=22.7
Q ss_pred CCChH-HHHHHHhhcCCCHHHHHHHHHHH
Q 019880 31 GNPTD-TLVRFLKARDWNVSKAHKMLVDC 58 (334)
Q Consensus 31 ~~~d~-~LlRFLra~~~dv~kA~~~l~~~ 58 (334)
++.|. -.++-|++.++|+++|+..|-..
T Consensus 20 GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 20 GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 46554 46999999999999999988653
No 9
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=75.46 E-value=4.9 Score=27.69 Aligned_cols=28 Identities=4% Similarity=0.096 Sum_probs=25.1
Q ss_pred CCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 30 QGNPTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 30 ~~~~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
.++.+.++.+.|..++.|++.+...|-.
T Consensus 25 PdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 25 PDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp CSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 4688999999999999999999998754
No 10
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=73.47 E-value=6 Score=26.16 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.9
Q ss_pred CCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 30 QGNPTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 30 ~~~~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
.+++...+-.-|+++++|++.|..+|.+
T Consensus 21 P~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 21 PNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4578889999999999999999999865
No 11
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=71.26 E-value=8.9 Score=26.61 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=22.2
Q ss_pred CC-ChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 31 GN-PTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 31 ~~-~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
++ ++.-.++-|++.++|+++|++.|..
T Consensus 40 GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 40 GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45 4567799999999999999988754
No 12
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=70.75 E-value=12 Score=26.55 Aligned_cols=28 Identities=25% Similarity=0.087 Sum_probs=24.1
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l~~~ 58 (334)
+++.....+-|++.++|+++|...|-.+
T Consensus 40 GF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 40 GFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp SCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 5788888999999999999999888764
No 13
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=69.72 E-value=11 Score=25.57 Aligned_cols=27 Identities=22% Similarity=0.096 Sum_probs=22.1
Q ss_pred CCC-hHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 31 GNP-TDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 31 ~~~-d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
++. +.--+|-|++.++|+++|++.|.+
T Consensus 30 GF~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 30 GFVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp TCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 444 446699999999999999998865
No 14
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=69.72 E-value=5.6 Score=23.54 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=21.4
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKML 55 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l 55 (334)
+++.....+.|+++++|++.|...|
T Consensus 15 Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 15 GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5777788899999999999998765
No 15
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=65.20 E-value=16 Score=25.88 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=25.6
Q ss_pred cCCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 29 HQGNPTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 29 ~~~~~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
.+.+++..|.+-..+.+||+++|...+.+
T Consensus 46 GdsV~e~~Lv~ailk~dfD~ekALd~vL~ 74 (83)
T 1ufz_A 46 GDAVPDDILTEAILKHKFDVQKALSVVLE 74 (83)
T ss_dssp TTTSCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 45688999999999999999999998865
No 16
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=63.68 E-value=11 Score=23.79 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=25.3
Q ss_pred hcCCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 28 VHQGNPTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 28 ~~~~~~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
+-...+...+-+-|+++++|+++|..+|.+
T Consensus 14 MFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 14 MFPAISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp HCSSSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 334567788999999999999999999876
No 17
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=62.84 E-value=15 Score=22.76 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=18.2
Q ss_pred CCh-HHHHHHHhhcCCCHHHHHHH
Q 019880 32 NPT-DTLVRFLKARDWNVSKAHKM 54 (334)
Q Consensus 32 ~~d-~~LlRFLra~~~dv~kA~~~ 54 (334)
.+| .....||.+++||++.|+..
T Consensus 18 ~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 18 IENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 344 56788999999999999753
No 18
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=62.47 E-value=11 Score=25.28 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHhhccHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019880 2 AHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (334)
Q Consensus 2 ~~~~~i~~lr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~kA~~~l~~~ 58 (334)
++.+.|++||+.... .-...-+-|..+++|+++|+..|+.-
T Consensus 8 it~~~Vk~LRe~TGa----------------g~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 8 SSKELLMKLRRKTGY----------------SFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp CCCHHHHHHHHHHCC----------------CHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------------CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455677777766443 33355677889999999999999764
No 19
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.70 E-value=12 Score=25.30 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.0
Q ss_pred ChHHHHHHHhhcCCCHHHHHHHHH
Q 019880 33 PTDTLVRFLKARDWNVSKAHKMLV 56 (334)
Q Consensus 33 ~d~~LlRFLra~~~dv~kA~~~l~ 56 (334)
+......||.+.+||++.|+..+-
T Consensus 33 d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 33 SMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 455788999999999999987753
No 20
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=61.51 E-value=17 Score=24.96 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=21.3
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
+++.....+-|+++++|+++|+.-|-+
T Consensus 40 GF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 40 GFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 567777788888888888888877654
No 21
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=60.68 E-value=9.6 Score=24.43 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=23.5
Q ss_pred CC-ChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 31 GN-PTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 31 ~~-~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
++ ++....+-|+++++|+++|+..|..
T Consensus 22 GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 22 GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 57 7778899999999999999998864
No 22
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=59.55 E-value=10 Score=23.83 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.9
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
+++.....+=|+++++|+++|...|-.
T Consensus 19 GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 19 GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 588889999999999999999988754
No 23
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.26 E-value=19 Score=24.38 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=25.3
Q ss_pred cCCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 29 HQGNPTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 29 ~~~~~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
-..++...+..-|+++++|++.|++.|.+
T Consensus 29 FP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 29 FPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp CSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35678889999999999999999998865
No 24
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=54.94 E-value=12 Score=22.94 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.0
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKML 55 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l 55 (334)
+.+...-..||.+++||++.|+..+
T Consensus 17 g~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 17 GAEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp CCCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3467788999999999999998765
No 25
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=54.23 E-value=13 Score=22.53 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=22.3
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKMLV 56 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l~ 56 (334)
+++.....+=|+++++|++.|...|-
T Consensus 15 GF~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 15 GFTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp TSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 57778888999999999999988764
No 26
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=54.13 E-value=12 Score=23.79 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.2
Q ss_pred CC-ChHHHHHHHhhcCCCHHHHHHHHH
Q 019880 31 GN-PTDTLVRFLKARDWNVSKAHKMLV 56 (334)
Q Consensus 31 ~~-~d~~LlRFLra~~~dv~kA~~~l~ 56 (334)
++ ++...++-|++.++|+++|++.|.
T Consensus 23 GF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 23 GFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp TCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 57 777889999999999999998774
No 27
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.29 E-value=18 Score=24.05 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=23.7
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l~~~ 58 (334)
+++.....+-|+++++|+++|...|..+
T Consensus 20 GF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 20 GFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp TCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 5777788899999999999999887654
No 28
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=50.49 E-value=15 Score=23.52 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=20.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHH
Q 019880 35 DTLVRFLKARDWNVSKAHKMLV 56 (334)
Q Consensus 35 ~~LlRFLra~~~dv~kA~~~l~ 56 (334)
.+|-|.|.+.++|+.+|...|.
T Consensus 27 GWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 27 GWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp SHHHHHHHHTTTCHHHHHHHHT
T ss_pred cHHHHHHHHccCCHHHHHHHhh
Confidence 4999999999999999998874
No 29
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.63 E-value=20 Score=23.76 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.2
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKML 55 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l 55 (334)
+.+...-..||.+.+||++.|+..+
T Consensus 27 g~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 27 GASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CCCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3557788999999999999998765
No 30
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.52 E-value=30 Score=22.18 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=26.9
Q ss_pred cCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019880 29 HQGNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (334)
Q Consensus 29 ~~~~~d~~LlRFLra~~~dv~kA~~~l~~~ 58 (334)
..+++.+...|-|...++|++.|...|+.+
T Consensus 18 ~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 18 SQGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 358999999999999999999999999864
No 31
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.26 E-value=42 Score=23.63 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=21.9
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l~~~ 58 (334)
+++.....+-|+++++|++.|..-|-.+
T Consensus 40 GF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 40 GFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp TCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 5777778888888888888888777654
No 32
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=46.94 E-value=17 Score=25.05 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=22.5
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
+++.+...+-|+++++|+++|...|..
T Consensus 40 GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 40 GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 578888888999999999999887753
No 33
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=45.74 E-value=20 Score=22.18 Aligned_cols=26 Identities=27% Similarity=0.134 Sum_probs=21.3
Q ss_pred CCC-hHHHHHHHhhcCCCHHHHHHHHH
Q 019880 31 GNP-TDTLVRFLKARDWNVSKAHKMLV 56 (334)
Q Consensus 31 ~~~-d~~LlRFLra~~~dv~kA~~~l~ 56 (334)
++. +.-.++-|++.++|+++|+..|-
T Consensus 18 GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 18 GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 454 45679999999999999998774
No 34
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=45.05 E-value=35 Score=21.77 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=27.5
Q ss_pred hcCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019880 28 VHQGNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (334)
Q Consensus 28 ~~~~~~d~~LlRFLra~~~dv~kA~~~l~~~ 58 (334)
+..+++....++-|+..++|++-|...|+.+
T Consensus 19 m~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 19 MGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 3468999999999999999999999998764
No 35
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=44.54 E-value=20 Score=23.50 Aligned_cols=27 Identities=26% Similarity=0.194 Sum_probs=22.2
Q ss_pred CC-ChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 31 GN-PTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 31 ~~-~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
++ ++...++-|++.++|+++|++.|.+
T Consensus 28 GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 28 GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45 4556799999999999999998864
No 36
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.01 E-value=29 Score=22.90 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=24.3
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKMLVDCL 59 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l~~~l 59 (334)
+++.....+=|++.++|++.|..-|-.+.
T Consensus 20 GF~~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 20 GFSRDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp TCCHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 57777888999999999999998887653
No 37
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.40 E-value=26 Score=23.51 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.2
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKML 55 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l 55 (334)
+.++..-..||.+.+||++.|+..+
T Consensus 29 g~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 29 GCAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp CCCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4566778899999999999998775
No 38
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.17 E-value=56 Score=22.37 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=22.4
Q ss_pred CCChHHHHHHHhhcCC-CHHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDW-NVSKAHKMLVDC 58 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~-dv~kA~~~l~~~ 58 (334)
+++.....|-|++++. |++.|..-|-.+
T Consensus 20 GF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 20 GFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 5777788888999885 899998887664
No 39
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=40.94 E-value=63 Score=19.98 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=27.2
Q ss_pred hcCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019880 28 VHQGNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (334)
Q Consensus 28 ~~~~~~d~~LlRFLra~~~dv~kA~~~l~~~ 58 (334)
+..+|+.....|-|-..+.|++.|...|+.+
T Consensus 12 ~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 12 MSQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 3578999999999999999999999999864
No 40
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=38.49 E-value=42 Score=21.95 Aligned_cols=28 Identities=11% Similarity=0.346 Sum_probs=24.7
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l~~~ 58 (334)
+.+-.+-.++|...+||.++|.+.+..-
T Consensus 19 gmn~~~s~~cL~~~~Wd~~~A~~~F~~l 46 (59)
T 1oai_A 19 GMNLEWSQKCLQDNNWDYTRSAQAFTHL 46 (59)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5778899999999999999999987663
No 41
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.74 E-value=50 Score=22.72 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=21.5
Q ss_pred ChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 33 PTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 33 ~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
|-.+|.--|+|.++|+..|+.+|.+
T Consensus 39 D~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 39 DAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cHHHHHHHHHhccCCHHHHHHHHhc
Confidence 3458889999999999999999864
No 42
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.25 E-value=67 Score=21.91 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=24.2
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
..+|..+-.+++..+.+.+++..+|.+
T Consensus 23 EvPd~VVsqc~~qN~~Nl~aC~~~L~q 49 (75)
T 2dae_A 23 EVPEVVVSRCMLQNNNNLDACCAVLSQ 49 (75)
T ss_dssp SSCHHHHHHHHTTTTSCSHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhccCHHHHHHHHHH
Confidence 567889999999999999999999865
No 43
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=32.12 E-value=83 Score=20.24 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=27.2
Q ss_pred hcCCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019880 28 VHQGNPTDTLVRFLKARDWNVSKAHKMLVDC 58 (334)
Q Consensus 28 ~~~~~~d~~LlRFLra~~~dv~kA~~~l~~~ 58 (334)
+..+|+....+|-|...+.|++-|...|+.+
T Consensus 15 ~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 15 MSQGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4578999999999999999999999988763
No 44
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=30.77 E-value=46 Score=20.56 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.7
Q ss_pred CCCChHHHHHHHhhcCCCHHHHHHHH
Q 019880 30 QGNPTDTLVRFLKARDWNVSKAHKML 55 (334)
Q Consensus 30 ~~~~d~~LlRFLra~~~dv~kA~~~l 55 (334)
-+++....++=|.++++|++.|...|
T Consensus 14 mGF~~~~a~~Al~a~~~n~e~A~~~L 39 (47)
T 1dv0_A 14 LGFPESLVIQAYFACEKNENLAANFL 39 (47)
T ss_dssp TTCCHHHHHHHHTTTTSCHHHHHHHT
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 46888899999999999999998765
No 45
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.11 E-value=75 Score=20.43 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.6
Q ss_pred ChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 33 PTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 33 ~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
|...=.+-|+..++|+++|+..|.+
T Consensus 23 D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 23 DRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp CHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5667799999999999999888765
No 46
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=29.19 E-value=96 Score=25.41 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=41.1
Q ss_pred HHHHhhhccCcccccceEEEcCChhhHHHHHHHc-----ccCChhhhcceEEeCCCChhHHHhhCCC
Q 019880 172 VITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK-----PLLQERTRRKMQVLQGNGRDELLKIMDY 233 (334)
Q Consensus 172 ~i~~i~~~~YPerl~~i~ivN~P~~f~~~~~~vk-----pfL~~~t~~KI~i~~~~~~~~L~~~I~~ 233 (334)
.+.++.|-.+- -+.++++|..-++..+..++. -|++++.++.+.+.. +.+++.++|.|
T Consensus 127 e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d--~~ee~~~~l~~ 189 (189)
T 3sbx_A 127 DVWTEGYLGMH--DKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVD--NLDDALQACAP 189 (189)
T ss_dssp HHHHHHHTTSC--CCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEES--SHHHHHHHHCC
T ss_pred HHHHHHHhccc--CCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeC--CHHHHHHHhcC
Confidence 33344444432 368999999767777766543 589999999999976 58888887754
No 47
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=28.73 E-value=50 Score=24.56 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCC-hHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 31 GNP-TDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 31 ~~~-d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
++. +...++-|++.++|+++|++.|.+
T Consensus 77 GF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 77 GIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 454 468899999999999999998864
No 48
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.40 E-value=72 Score=21.08 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=22.5
Q ss_pred CCChHHHHHHHhhc-CCCHHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKAR-DWNVSKAHKMLVDC 58 (334)
Q Consensus 31 ~~~d~~LlRFLra~-~~dv~kA~~~l~~~ 58 (334)
+++.....+=|+++ ++|++.|+.-|-.+
T Consensus 20 GF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 20 GFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp TCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 57778888888888 68999888877654
No 49
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=27.30 E-value=67 Score=20.84 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=24.5
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
+.+-.+-.++|...+||.++|...+..
T Consensus 18 ~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 18 KLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp CSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 567789999999999999999999877
No 50
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=27.25 E-value=95 Score=25.68 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=30.0
Q ss_pred CchHHHHHHHHHHHhhccHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 1 MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 1 ~~~~~~i~~lr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
|-+.+.|++||+..... =..+-+-|..+++|+++|.+.|+.
T Consensus 1 m~~a~~VKeLRe~TGag----------------mmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 1 MSQMELIKKLREATGAG----------------MMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp -CHHHHHHHHHHHHCCC----------------HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhCCC----------------HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44567788888765442 235567788899999999999986
No 51
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.04 E-value=1.6e+02 Score=21.62 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.2
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
+++.+....-|..++||+.+|...|..
T Consensus 51 G~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 51 GKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 678888889999999999999888865
No 52
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=26.22 E-value=1.2e+02 Score=18.90 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=29.5
Q ss_pred cHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHH
Q 019880 18 DDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLV 56 (334)
Q Consensus 18 ~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~kA~~~l~ 56 (334)
|+.|-...+.+-++-+...+.|=|+..+.||..|+.-|.
T Consensus 9 Pe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlL 47 (53)
T 2qho_B 9 PEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLL 47 (53)
T ss_dssp CHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHh
Confidence 444444444555678888999999999999999987664
No 53
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.41 E-value=77 Score=20.95 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=21.4
Q ss_pred CCChHHHHHHHhhcCC-CHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDW-NVSKAHKMLVD 57 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~-dv~kA~~~l~~ 57 (334)
+++.....+-|+++++ |++.|+.-|-.
T Consensus 30 GF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 30 GFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 5777788888888888 88888877643
No 54
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=25.38 E-value=1.8e+02 Score=20.36 Aligned_cols=28 Identities=14% Similarity=0.017 Sum_probs=19.4
Q ss_pred CCChHHHHHHHhhcC-CCHHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARD-WNVSKAHKMLVDC 58 (334)
Q Consensus 31 ~~~d~~LlRFLra~~-~dv~kA~~~l~~~ 58 (334)
+++.....|-|++.. +|++.|..-|-.+
T Consensus 40 GF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 40 GFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp TCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 466667777777664 6888887776554
No 55
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.31 E-value=70 Score=21.19 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=23.3
Q ss_pred CCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 30 QGNPTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 30 ~~~~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
-++++..-.|=|++.+.|+++|..=|=.
T Consensus 29 MGFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 29 MGYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3588889999999999999999876543
No 56
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=29.32 E-value=17 Score=27.70 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHH
Q 019880 35 DTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 35 ~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
.+|..-|+|.++|+.+|+.+|..
T Consensus 35 ~~L~~ALkAsnGdl~qAV~~LT~ 57 (129)
T 2lva_A 35 SFLHEALKASNGDITQAVSLLTD 57 (129)
Confidence 47888999999999999999965
No 57
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=23.26 E-value=29 Score=30.63 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=24.6
Q ss_pred CcccccceEEEcCChhhHHHHHHHcccCChhh
Q 019880 181 YPEKTETYYIVNAPYIFSACWKVVKPLLQERT 212 (334)
Q Consensus 181 YPerl~~i~ivN~P~~f~~~~~~vkpfL~~~t 212 (334)
+...=..++|||+||-+....+-+-|+|.+..
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~l 264 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTYF 264 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHHS
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHHh
Confidence 44445679999999999988888877776543
No 58
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=22.94 E-value=1.1e+02 Score=26.89 Aligned_cols=40 Identities=10% Similarity=0.043 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHhhccHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 2 AHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 2 ~~~~~i~~lr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
++.+.|++||+.... .=..+-+-|..+++|+++|.+.|+.
T Consensus 3 ~ta~~VKeLRe~TGa----------------gmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 3 SSKELLMKLRRKTGY----------------SFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHHHCC----------------CHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------------CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 466778888877443 3335667788899999999999986
No 59
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=21.32 E-value=1.7e+02 Score=24.05 Aligned_cols=59 Identities=8% Similarity=0.060 Sum_probs=41.9
Q ss_pred HHHHHhhhccCcccccceEEEcCChhhHHHHHHHc-----ccCChhhhcceEEeCCCChhHHHhhCCC
Q 019880 171 TVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK-----PLLQERTRRKMQVLQGNGRDELLKIMDY 233 (334)
Q Consensus 171 ~~i~~i~~~~YPerl~~i~ivN~P~~f~~~~~~vk-----pfL~~~t~~KI~i~~~~~~~~L~~~I~~ 233 (334)
..+.++.|-.+. -+.++++|..-++..++.++. -|++++.++.+.+.. +.+++.+++.+
T Consensus 135 ~e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d--~~~e~~~~l~~ 198 (199)
T 3qua_A 135 FEAWTAGYLGMH--DKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVD--NVEAALEACAP 198 (199)
T ss_dssp HHHHHHHHTTSC--CCCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEES--SHHHHHHHHSC
T ss_pred HHHHHHHHhccC--CCCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEeC--CHHHHHHHHhc
Confidence 334444454442 358999998777777777654 478888899999976 58888887754
No 60
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=21.17 E-value=1.9e+02 Score=21.27 Aligned_cols=50 Identities=8% Similarity=0.015 Sum_probs=33.5
Q ss_pred EEEEEeCCCCcccccchhHHHHHHHHhhhccCcccccceEEEcCChhhHHHHHH
Q 019880 150 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKV 203 (334)
Q Consensus 150 ~v~IiDl~g~~l~~~~~~~~~~~i~~i~~~~YPerl~~i~ivN~P~~f~~~~~~ 203 (334)
-.+|+||++++.-..+-+..+..+.+.++ .+=..++++|++.-+.-++..
T Consensus 49 ~~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~ 98 (130)
T 2kln_A 49 EWFVLNAESNVEVDLTALDALDQLRTELL----RRGIVFAMARVKQDLRESLRA 98 (130)
T ss_dssp EEEEEECSCCSSSBCSTTTHHHHHHHHHH----TTTEEEEEECCSSHHHHHHHH
T ss_pred eEEEEECCCCChhhHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHHHHH
Confidence 36899999999866555555555554443 344678899988766555554
No 61
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=20.55 E-value=1.6e+02 Score=21.63 Aligned_cols=50 Identities=6% Similarity=-0.008 Sum_probs=33.2
Q ss_pred EEEEeCCCCcccccchhHHHHHHHHhhhccCcccccceEEEcCChhhHHHHHHH
Q 019880 151 LKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 204 (334)
Q Consensus 151 v~IiDl~g~~l~~~~~~~~~~~i~~i~~~~YPerl~~i~ivN~P~~f~~~~~~v 204 (334)
.+|+||++++.-...-+..+..+...++ ++=.++.++|++.-+.-++.+.
T Consensus 54 ~vvlDls~V~~iDSsGl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~ 103 (125)
T 2ka5_A 54 KIFLVLSDVESIDSFSLGVIVNILKSIS----SSGGFFALVSPNEKVERVLSLT 103 (125)
T ss_dssp EEEEECTTCSCCCHHHHHHHHHHHHHHH----HHTCEEEEECCCHHHHHHHHHT
T ss_pred EEEEECCCCCEEcHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHc
Confidence 5899999998765444444444443333 3336789999998777777654
No 62
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.54 E-value=80 Score=22.27 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=21.9
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019880 31 GNPTDTLVRFLKARDWNVSKAHKMLVD 57 (334)
Q Consensus 31 ~~~d~~LlRFLra~~~dv~kA~~~l~~ 57 (334)
+++.....+-|++.++|++.|..-|-.
T Consensus 32 GF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 32 GFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp TCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 577777888889999999998887754
Done!