BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019882
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|B Chain B, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|C Chain C, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|D Chain D, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|2Q41|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
Length = 334
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/307 (56%), Positives = 217/307 (70%), Gaps = 51/307 (16%)
Query: 47 CHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESL 106
C STV+ GWFSE +P WPGEAHSLKV+++LF+GKS+YQ+V+VF+S
Sbjct: 39 CFSTVIPGWFSEX--------------SPXWPGEAHSLKVEKVLFQGKSDYQDVIVFQSA 84
Query: 107 AYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPK---------------------- 144
YGKVLVLDG++QLTE+DECAYQE I HLPLCSIP+PK
Sbjct: 85 TYGKVLVLDGVIQLTERDECAYQEXITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASI 144
Query: 145 -------------TVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD 191
VSK++FP++A+G+EDPRV L IGD V FL+ G YDA+IVDSSD
Sbjct: 145 EQIDXCEIDKXVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSD 204
Query: 192 PVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAW 251
P+GPA+EL EKPFF ++A+ALRPGGV+C AES+WLH +IED++S CRE FKGSV+YAW
Sbjct: 205 PIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHXDIIEDIVSNCREIFKGSVNYAW 264
Query: 252 ASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALP 311
SVPTYPSG+IGF +CSTEGP VDF +P+NPI+ E + K L+FYN+EIHSAAF LP
Sbjct: 265 TSVPTYPSGVIGFXLCSTEGPDVDFKHPLNPID--ESSSKSNGPLKFYNAEIHSAAFCLP 322
Query: 312 AFLKREV 318
+F K+ +
Sbjct: 323 SFAKKVI 329
>pdb|2O05|A Chain A, Human Spermidine Synthase
pdb|2O05|B Chain B, Human Spermidine Synthase
pdb|2O06|A Chain A, Human Spermidine Synthase
pdb|2O06|B Chain B, Human Spermidine Synthase
pdb|2O07|A Chain A, Human Spermidine Synthase
pdb|2O07|B Chain B, Human Spermidine Synthase
pdb|2O0L|A Chain A, Human Spermidine Synthase
pdb|2O0L|B Chain B, Human Spermidine Synthase
Length = 304
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 179/306 (58%), Gaps = 55/306 (17%)
Query: 49 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAY 108
+ + GWF E+ S +WPG+A SL+V+++L +S YQ++LVF S Y
Sbjct: 16 AAIREGWFRETCS--------------LWPGQALSLQVEQLLHHRRSRYQDILVFRSKTY 61
Query: 109 GKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPK------------------------ 144
G VLVLDG++Q TE+DE +YQEMIA+LPLCS P+P+
Sbjct: 62 GNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVES 121
Query: 145 -----------TVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV 193
VSKK+ P +A+G+ ++ LH+GD EF++Q + +D II DSSDP+
Sbjct: 122 VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDPM 180
Query: 194 GPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWAS 253
GPA+ L ++ ++ + AL+ GVLC E WLH LI++M C+ F V YA+ +
Sbjct: 181 GPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFP-VVAYAYCT 239
Query: 254 VPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAF 313
+PTYPSG IGF++CS + P +F P+ P+ + + A + +L++YNS++H AAF LP F
Sbjct: 240 IPTYPSGQIGFMLCS-KNPSTNFQEPVQPLTQQQVA---QMQLKYYNSDVHRAAFVLPEF 295
Query: 314 LKREVS 319
++ ++
Sbjct: 296 ARKALN 301
>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
pdb|3RW9|B Chain B, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
Length = 304
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 179/306 (58%), Gaps = 55/306 (17%)
Query: 49 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAY 108
+ + GWF E+ S +WPG+A SL+V+++L +S YQ++LVF S Y
Sbjct: 16 AAIREGWFRETCS--------------LWPGQALSLQVEQLLHHRRSRYQDILVFRSKTY 61
Query: 109 GKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPK------------------------ 144
G VLVLDG++Q TE+DE +YQEMIA+LPLCS P+P+
Sbjct: 62 GNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVES 121
Query: 145 -----------TVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV 193
VSKK+ P +A+G+ ++ LH+GD EF++Q + +D II DSSDP+
Sbjct: 122 VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDPM 180
Query: 194 GPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWAS 253
GPA+ L ++ ++ + AL+ GVLC E WLH LI++M C+ F V YA+ +
Sbjct: 181 GPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFP-VVAYAYCT 239
Query: 254 VPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAF 313
+PTYPSG IGF++CS + P +F P+ P+ + + A + +L++YNS++H AAF LP F
Sbjct: 240 IPTYPSGQIGFMLCS-KNPSTNFQEPVQPLTQQQVA---QMQLKYYNSDVHRAAFVLPEF 295
Query: 314 LKREVS 319
++ ++
Sbjct: 296 ARKALN 301
>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PT6|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT9|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
Length = 321
Score = 224 bits (570), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 124/278 (44%), Positives = 158/278 (56%), Gaps = 44/278 (15%)
Query: 76 MWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHL 135
MWPG+A SLK+K+IL++ KS+YQ VLVFES YGKVLVLDG++QLTEKDE AY EM+ H+
Sbjct: 50 MWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHV 109
Query: 136 PLCSIPSPKT-----------------------------------VSKKYFPELAVGFED 160
P+ PK VSK YF ++ G+ED
Sbjct: 110 PMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYED 169
Query: 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220
RV + I DA +FL V YD IIVDSSDP+GPA+ L + F++ I AL+P G
Sbjct: 170 KRVNVFIEDASKFLENVTNT-YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA 228
Query: 221 MAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPI 280
ES+W+H I++MI ++ FK V YA S+PTYP G IG L CS P
Sbjct: 229 QCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCS--KTDTGLTKPN 285
Query: 281 NPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREV 318
+E E AD L++YN E HSAAF LPAFL +E+
Sbjct: 286 KKLESKEFAD-----LKYYNYENHSAAFKLPAFLLKEI 318
>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
Length = 282
Score = 224 bits (570), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 124/278 (44%), Positives = 158/278 (56%), Gaps = 44/278 (15%)
Query: 76 MWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHL 135
MWPG+A SLK+K+IL++ KS+YQ VLVFES YGKVLVLDG++QLTEKDE AY EM+ H+
Sbjct: 11 MWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHV 70
Query: 136 PLCSIPSPKT-----------------------------------VSKKYFPELAVGFED 160
P+ PK VSK YF ++ G+ED
Sbjct: 71 PMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYED 130
Query: 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220
RV + I DA +FL V YD IIVDSSDP+GPA+ L + F++ I AL+P G
Sbjct: 131 KRVNVFIEDASKFLENVTNT-YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA 189
Query: 221 MAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPI 280
ES+W+H I++MI ++ FK V YA S+PTYP G IG L CS P
Sbjct: 190 QCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCS--KTDTGLTKPN 246
Query: 281 NPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREV 318
+E E AD L++YN E HSAAF LPAFL +E+
Sbjct: 247 KKLESKEFAD-----LKYYNYENHSAAFKLPAFLLKEI 279
>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2I7C|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|3B7P|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3RIE|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
Length = 283
Score = 224 bits (570), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 124/278 (44%), Positives = 158/278 (56%), Gaps = 44/278 (15%)
Query: 76 MWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHL 135
MWPG+A SLK+K+IL++ KS+YQ VLVFES YGKVLVLDG++QLTEKDE AY EM+ H+
Sbjct: 12 MWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHV 71
Query: 136 PLCSIPSPKT-----------------------------------VSKKYFPELAVGFED 160
P+ PK VSK YF ++ G+ED
Sbjct: 72 PMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYED 131
Query: 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220
RV + I DA +FL V YD IIVDSSDP+GPA+ L + F++ I AL+P G
Sbjct: 132 KRVNVFIEDASKFLENVTNT-YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA 190
Query: 221 MAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPI 280
ES+W+H I++MI ++ FK V YA S+PTYP G IG L CS P
Sbjct: 191 QCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCS--KTDTGLTKPN 247
Query: 281 NPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREV 318
+E E AD L++YN E HSAAF LPAFL +E+
Sbjct: 248 KKLESKEFAD-----LKYYNYENHSAAFKLPAFLLKEI 280
>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
pdb|2B2C|B Chain B, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
Length = 314
Score = 214 bits (545), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 115/275 (41%), Positives = 158/275 (57%), Gaps = 41/275 (14%)
Query: 77 WPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLP 136
WPG+A SL+VK++LF KS+YQ+VLVFES YG VLVLDGIVQ TE+DE +YQEM+AHLP
Sbjct: 43 WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102
Query: 137 LCSIPSPK-----------------------------------TVSKKYFPELAVGFEDP 161
+ + P PK V+KK+ P ++ GF P
Sbjct: 103 MFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 162
Query: 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221
++ L GD EFL+ + ++D II DSSDPVGPA+ L + +++ + AL+ G+L +
Sbjct: 163 KLDLFCGDGFEFLKN-HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 221
Query: 222 AESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPIN 281
ES+WLH LI +++ R+ F +V YA + V TYPSG +G+LIC+ +
Sbjct: 222 GESVWLHLPLIAHLVAFNRKIFP-AVTYAQSIVSTYPSGSMGYLICAKNANR----DVTT 276
Query: 282 PIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKR 316
P L LRFYNSE+H AAF LP F+K
Sbjct: 277 PARTLTAEQIKALNLRFYNSEVHKAAFVLPQFVKN 311
>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWB|B Chain B, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWC|A Chain A, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
pdb|3BWC|B Chain B, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
Length = 304
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 157/303 (51%), Gaps = 57/303 (18%)
Query: 51 VVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLA--- 107
+ GWF E N WPG+A SL+V+++L+ +++Q + +FES
Sbjct: 15 ISGGWFRE--------------ENDQWPGQAXSLRVEKVLYDAPTKFQHLTIFESDPKGP 60
Query: 108 YGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTV--------------------- 146
+G V LDG +Q+T+ DE Y E++ H LCS P P+ V
Sbjct: 61 WGTVXALDGCIQVTDYDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVE 120
Query: 147 --------------SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDP 192
SK++FP+++ DPR + +GD + F+RQ P YD +I+D++DP
Sbjct: 121 HCDLVDIDGEVXEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDP 180
Query: 193 VGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWA 252
GPA +L + F+ + + L+P G+ CN ES+WL LIE RET SV YA
Sbjct: 181 AGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKXSRFIRETGFASVQYALX 240
Query: 253 SVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPA 312
VPTYP G IG L+CS + VD P+ P+E A ++L++Y+SE H A+FALP
Sbjct: 241 HVPTYPCGSIGTLVCSKKA-GVDVTKPLRPVEDXPFA----KDLKYYDSEXHKASFALPR 295
Query: 313 FLK 315
F +
Sbjct: 296 FAR 298
>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase
pdb|1IY9|B Chain B, Crystal Structure Of Spermidine Synthase
pdb|1IY9|C Chain C, Crystal Structure Of Spermidine Synthase
pdb|1IY9|D Chain D, Crystal Structure Of Spermidine Synthase
Length = 275
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 133/267 (49%), Gaps = 47/267 (17%)
Query: 83 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPS 142
++KV + L ++E+Q + + E+ +G +L LDG+V +EKDE Y EM+AH+PL + P+
Sbjct: 16 TMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPN 75
Query: 143 PK-----------------------------------TVSKKYFPELAVGFEDPRVRLHI 167
P+ SKK+ P +A +DPRV + +
Sbjct: 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV 135
Query: 168 GDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWL 227
D + + +YD I+VDS++PVGPA L K F+ IAKAL+ G+ ++ W
Sbjct: 136 DDGFMHIAK-SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWF 194
Query: 228 HTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLE 287
LI ++ +E F + Y A++PTYPSG+ F I S + +P+ +E
Sbjct: 195 TPELITNVQRDVKEIFPITKLYT-ANIPTYPSGLWTFTIGSKK------YDPL----AVE 243
Query: 288 GADKHKRELRFYNSEIHSAAFALPAFL 314
+ E ++Y +IH AAF LP F+
Sbjct: 244 DSRFFDIETKYYTKDIHKAAFVLPKFV 270
>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|B Chain B, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|C Chain C, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|D Chain D, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|E Chain E, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|F Chain F, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|G Chain G, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|H Chain H, Crystal Structure Of Spermidine Synthase From E. Coli
Length = 294
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 127/274 (46%), Gaps = 46/274 (16%)
Query: 84 LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP 143
V +L+ K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE Y EM+ H+PL +
Sbjct: 25 FAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHA 84
Query: 144 KTV-----------------------------------SKKYFPELAVG-FEDPRVRLHI 167
K V ++Y P G ++DPR +L I
Sbjct: 85 KHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVI 144
Query: 168 GDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWL 227
D V F+ Q + +D II D +DP+GP + L F++ + L PGG+ +L
Sbjct: 145 DDGVNFVNQTSQ-TFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFL 203
Query: 228 HTHLIEDMISICRET--FKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEK 285
E+ I R+ + V + A++PTY GI+ F + I
Sbjct: 204 QQ---EEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDNDALRHLSTEIIQARF 260
Query: 286 LEGADKHKRELRFYNSEIHSAAFALPAFLKREVS 319
L K R+YN IH+AAFALP +L+ ++
Sbjct: 261 LASGLK----CRYYNPAIHTAAFALPQYLQDALA 290
>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|B Chain B, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|C Chain C, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|D Chain D, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1INL|A Chain A, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|B Chain B, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|C Chain C, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|D Chain D, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
Length = 296
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 130/276 (47%), Gaps = 49/276 (17%)
Query: 84 LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP 143
+K+ +++ G+S+ Q + +FE+ G V LDGI TEKDE Y EM+AH+P+ P+P
Sbjct: 32 MKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNP 91
Query: 144 KTV-----------------------------------SKKYFPELAVGFEDPRVRLHIG 168
K V ++KY + + GF+DPR + I
Sbjct: 92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIA 151
Query: 169 DAVEFLRQVPRGKYDAIIVDSSDPV-GPAQELVEKPFFDTIAKALRPGGVLCNMAESMWL 227
+ E++R+ + ++D II+DS+DP G L + F+ AL+ GV E +
Sbjct: 152 NGAEYVRKF-KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFY 210
Query: 228 HTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKL- 286
+ + F + Y + TYPSG+ + S I+PI+
Sbjct: 211 DIGWFKLAYRRISKVFPITRVYL-GFMTTYPSGMWSYTFAS---------KGIDPIKDFD 260
Query: 287 -EGADKHKRELRFYNSEIHSAAFALPAFLKREVSVL 321
E K +EL++YN E+H A+FALP F+K+E+ ++
Sbjct: 261 PEKVRKFNKELKYYNEEVHVASFALPNFVKKELGLM 296
>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
pdb|3ANX|B Chain B, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
Length = 314
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 109/237 (45%), Gaps = 49/237 (20%)
Query: 70 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQ 129
MYF + P E +++ ++ GK+ +Q+ +FES +GKVL+LD VQ TE+DE Y
Sbjct: 5 MYFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYH 64
Query: 130 EMIAHLPLCSIPSPKT-----------------------------------VSKKYFPEL 154
E + H + + P PK V+K++ PE
Sbjct: 65 ETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEW 124
Query: 155 AVG-FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVG---PAQELVEKPFFDTIAK 210
G F+DPR L I DA +L + +YD +I+D +DPVG PA+ L F+ +
Sbjct: 125 HQGAFDDPRAVLVIDDARAYLERTEE-RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKA 183
Query: 211 ALRPGGVLCNMAESMWLHTHLIEDMI-SICRETFKGSVHYAWASVPTYPSGIIGFLI 266
L PGGV+ A + L H + ++ RE F+ V +Y + I GF +
Sbjct: 184 HLNPGGVMGMQAGMILLTHHRVHPVVHRTVREAFR--------YVRSYKNHIPGFFL 232
>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
pdb|1UIR|B Chain B, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
Length = 314
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 108/237 (45%), Gaps = 49/237 (20%)
Query: 70 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQ 129
MYF + P E +++ ++ GK+ +Q+ +FES +GKVL+LD VQ TE+DE Y
Sbjct: 5 MYFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYH 64
Query: 130 EMIAHLPLCSIPSPKT-----------------------------------VSKKYFPEL 154
E + H + + P PK V+K++ PE
Sbjct: 65 ETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEW 124
Query: 155 AVG-FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVG---PAQELVEKPFFDTIAK 210
G F+DPR L I DA +L + +YD +I+D +DPVG PA+ L F+ +
Sbjct: 125 HQGAFDDPRAVLVIDDARAYLERTEE-RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKA 183
Query: 211 ALRPGGVLCNMAESMWLHTHLIEDMI-SICRETFKGSVHYAWASVPTYPSGIIGFLI 266
L PGGV+ + L H + ++ RE F+ V +Y + I GF +
Sbjct: 184 HLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFR--------YVRSYKNHIPGFFL 232
>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
pdb|1MJF|B Chain B, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
Length = 281
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 128/288 (44%), Gaps = 63/288 (21%)
Query: 79 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLC 138
G + K+K+ +++ S+YQ++ V+E+ +G++L LDG VQL E +Y E + H +
Sbjct: 12 GYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAML 71
Query: 139 SIPSPK----------------------------------TVSKKYFP------ELAVGF 158
+ P PK VSK E +
Sbjct: 72 AHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNG 131
Query: 159 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVL 218
+ + +L IGD EF++ RG +D II DS+DPVGPA+ L + F+ + AL G+
Sbjct: 132 KHEKAKLTIGDGFEFIKN-NRG-FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIY 189
Query: 219 CNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGF-----LICSTEGPH 273
A S++L T +++IS +E K + V Y +IG+ + +G
Sbjct: 190 VTQAGSVYLFT---DELISAYKEMKK-----VFDRVYYYSFPVIGYASPWAFLVGVKG-D 240
Query: 274 VDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVL 321
+DF K++ K +L +Y+ +H F +P +++ + L
Sbjct: 241 IDFT-------KIDRERAKKLQLEYYDPLMHETLFQMPKYIRETLQRL 281
>pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2ZSU|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|E Chain E, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|F Chain F, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
Length = 280
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 123/282 (43%), Gaps = 64/282 (22%)
Query: 79 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLC 138
G + KVK + + +SEYQ++ V+E+ +GK+L +DG VQL + E +Y E + H +
Sbjct: 13 GYGVAFKVKRKILEEQSEYQKIEVYETEGFGKLLAIDGTVQLVTEGEKSYHEPLVHPAML 72
Query: 139 SIPSPKTV-----------------------------------SKKYFP------ELAVG 157
+ P+P+ V S KY E +
Sbjct: 73 AHPNPRRVLIIGGGDGGAIREVLKHEEVEEVIMVEIDKKVIEISAKYIGIDGGILEKMLS 132
Query: 158 FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 217
+ + +L IGD V+F+ + +D IIVDS+DPVGPA+ L + F+ +AL G+
Sbjct: 133 DKHEKGKLIIGDGVKFIEE--NSGFDVIIVDSTDPVGPAEMLFSEEFYKNAYRALNDPGI 190
Query: 218 LCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGF-----LICSTEGP 272
A S++L T R+ F +Y++ +IG+ + +G
Sbjct: 191 YVTQAGSVYLFTDEFLTAYRKMRKVFDKVYYYSFP--------VIGYASPWAFLVGVKGS 242
Query: 273 HVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFL 314
+DF+ K++ K L +Y+ + H F +P ++
Sbjct: 243 -IDFM-------KVDAEKGKKLGLEYYDPDKHETLFQMPRYI 276
>pdb|3C6K|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6M|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
Length = 381
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 77 WP---GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMI 132
WP G + E+++ S YQ + + S +G +L+L G V L E D AY I
Sbjct: 139 WPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAI 196
>pdb|3V9P|A Chain A, Crystal Structure Of Thymidylate Kinase From Burkholderia
Thailandensis
pdb|3V9P|B Chain B, Crystal Structure Of Thymidylate Kinase From Burkholderia
Thailandensis
Length = 227
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 32/159 (20%)
Query: 65 KTGKTMYFNNPMWPGEAHSLKVKEIL-FKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEK 123
+T + + N PM L+ + +L F G+ E+ +++ +LA G +V D T
Sbjct: 73 ETLREILLNQPM------DLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDAT-- 124
Query: 124 DECAYQEMIAHLPLCSIPS-PKTVSKKYFPELAVGFEDP-------RVRLHIGDA----- 170
AYQ LP + + + V + P+L V F+ P R + + D
Sbjct: 125 --FAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFESES 182
Query: 171 --------VEFLRQVPRGKYDAIIVDSSDPVGPAQELVE 201
E+LR+ + +IVDSS+P+ ++ +E
Sbjct: 183 DAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLE 221
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 153 ELAVGFEDPRVRLHIGDAVEF------------------LRQVPRGKYDAIIVDSSDPVG 194
E+A+ F DPR+R IGD + L+ VP +Y+ + ++ +G
Sbjct: 62 EMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMG 121
Query: 195 PAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASV 254
A ++ + I++ + +++ T L D + + FKGS ++ V
Sbjct: 122 -ASNVINACLKNAISQVIALSTDKAANPINLYGATKLCSDKLFVSANNFKGSSQTQFSVV 180
>pdb|2CMG|A Chain A, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMG|B Chain B, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|A Chain A, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|B Chain B, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|C Chain C, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
Length = 262
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 296 LRFYNSEIHSAAFALPAFLK 315
+R+YN +IH AAFALP L+
Sbjct: 234 VRYYNEDIHRAAFALPKNLQ 253
>pdb|3UAU|A Chain A, Crystal Structure Of The Lipoprotein Jlpa
pdb|3UAU|B Chain B, Crystal Structure Of The Lipoprotein Jlpa
Length = 379
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 74 NPMWPGEAH-SLKVKEI---LFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKD 124
N ++ GE + S+ +KE LFK + Q LVFE G+ +V D L ++D
Sbjct: 106 NEIYKGETNTSISIKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQD 160
>pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph
And Mg2+
pdb|3ULK|B Chain B, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph
And Mg2+
Length = 491
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 20/117 (17%)
Query: 49 STVVSGWFSESQ---STSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEY--QEVLVF 103
S +++ W ++ + + ++TGKT + P + G+ G+ EY + VL+
Sbjct: 314 SGMMADWANDDKKLLTWREETGKTAFETAPQYEGKI-----------GEQEYFDKGVLMI 362
Query: 104 ESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGFED 160
+ G L + +V +E AY E + LPL + T+++K E+ V D
Sbjct: 363 AMVKAGVELAFETMVDSGIIEESAYYESLHELPLIA----NTIARKRLYEMNVVISD 415
>pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|B Chain B, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|C Chain C, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|D Chain D, Escherichia Coli Ketol-Acid Reductoisomerase
Length = 491
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 20/117 (17%)
Query: 49 STVVSGWFSESQ---STSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEY--QEVLVF 103
S +++ W ++ + + ++TGKT + P + G+ G+ EY + VL+
Sbjct: 314 SGMMADWANDDKKLLTWREETGKTAFETAPQYEGKI-----------GEQEYFDKGVLMI 362
Query: 104 ESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGFED 160
+ G L + +V +E AY E + LPL + T+++K E+ V D
Sbjct: 363 AMVKAGVELAFETMVDSGIIEESAYYESLHELPLIA----NTIARKRLYEMNVVISD 415
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,733,999
Number of Sequences: 62578
Number of extensions: 454743
Number of successful extensions: 824
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 39
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)