Query 019882
Match_columns 334
No_of_seqs 344 out of 1849
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:17:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02366 spermidine synthase 100.0 7.6E-63 1.7E-67 474.1 27.0 271 38-322 1-306 (308)
2 KOG1562 Spermidine synthase [A 100.0 3E-62 6.6E-67 457.6 12.1 296 5-321 4-334 (337)
3 PRK00536 speE spermidine synth 100.0 3.1E-58 6.8E-63 432.2 20.6 219 77-321 8-259 (262)
4 PRK00811 spermidine synthase; 100.0 2.3E-55 5E-60 417.9 24.0 246 52-319 2-283 (283)
5 COG0421 SpeE Spermidine syntha 100.0 2.2E-55 4.7E-60 417.1 20.4 244 52-319 2-281 (282)
6 PLN02823 spermine synthase 100.0 2.5E-52 5.4E-57 405.4 25.2 248 52-323 29-317 (336)
7 TIGR00417 speE spermidine synt 100.0 1.4E-49 2.9E-54 375.5 22.6 229 76-313 6-270 (270)
8 PF01564 Spermine_synth: Sperm 100.0 3.9E-49 8.4E-54 368.5 21.9 207 54-274 1-242 (246)
9 PRK03612 spermidine synthase; 100.0 3.2E-41 6.9E-46 345.0 19.1 220 80-315 232-494 (521)
10 PRK01581 speE spermidine synth 100.0 1.8E-40 3.8E-45 323.1 19.5 185 86-275 96-319 (374)
11 COG4262 Predicted spermidine s 100.0 1.3E-37 2.9E-42 298.4 15.6 210 87-313 235-483 (508)
12 PRK04457 spermidine synthase; 99.7 5.7E-17 1.2E-21 153.0 17.8 164 93-270 12-217 (262)
13 COG2521 Predicted archaeal met 99.1 7.5E-10 1.6E-14 102.3 13.6 138 109-248 101-274 (287)
14 PF05430 Methyltransf_30: S-ad 98.3 2.5E-06 5.5E-11 72.2 7.9 93 161-269 31-123 (124)
15 PLN02476 O-methyltransferase 98.2 1.6E-05 3.5E-10 76.0 12.0 80 115-220 143-226 (278)
16 COG4122 Predicted O-methyltran 98.1 7.1E-06 1.5E-10 75.9 7.7 81 114-220 83-164 (219)
17 PF01596 Methyltransf_3: O-met 98.1 4.9E-06 1.1E-10 76.2 6.5 80 115-220 70-153 (205)
18 PLN02589 caffeoyl-CoA O-methyl 98.0 7.2E-05 1.6E-09 70.4 11.1 81 114-220 103-188 (247)
19 PLN02781 Probable caffeoyl-CoA 97.9 0.00014 3E-09 67.7 11.8 81 114-220 92-176 (234)
20 KOG2352 Predicted spermine/spe 97.5 0.0001 2.2E-09 74.8 4.6 84 160-245 344-437 (482)
21 PF13659 Methyltransf_26: Meth 97.4 0.00034 7.4E-09 56.7 5.7 74 146-222 38-115 (117)
22 COG1092 Predicted SAM-dependen 97.4 0.00047 1E-08 69.0 7.4 78 157-235 264-349 (393)
23 COG2519 GCD14 tRNA(1-methylade 97.0 0.0021 4.5E-08 60.6 7.7 95 115-244 119-214 (256)
24 TIGR00091 tRNA (guanine-N(7)-) 97.0 0.005 1.1E-07 55.3 9.4 77 161-241 66-147 (194)
25 PF10672 Methyltrans_SAM: S-ad 96.9 0.0019 4E-08 62.2 5.9 83 157-240 170-256 (286)
26 PRK15128 23S rRNA m(5)C1962 me 96.8 0.0042 9.1E-08 62.4 8.1 79 158-236 268-353 (396)
27 PRK01747 mnmC bifunctional tRN 96.6 0.0054 1.2E-07 65.1 7.5 63 158-222 142-206 (662)
28 KOG1663 O-methyltransferase [S 96.5 0.013 2.8E-07 54.7 8.4 85 110-220 93-181 (237)
29 PF12847 Methyltransf_18: Meth 96.4 0.0017 3.8E-08 52.0 2.2 60 159-221 50-110 (112)
30 PRK00121 trmB tRNA (guanine-N( 96.4 0.023 5.1E-07 51.4 9.2 77 161-241 90-171 (202)
31 PRK14121 tRNA (guanine-N(7)-)- 96.3 0.015 3.2E-07 58.3 8.5 67 161-227 172-240 (390)
32 PF08704 GCD14: tRNA methyltra 96.3 0.021 4.5E-07 53.9 8.8 105 112-250 62-170 (247)
33 PF02390 Methyltransf_4: Putat 96.2 0.0091 2E-07 54.1 5.6 78 160-241 66-148 (195)
34 PRK11524 putative methyltransf 96.2 0.018 3.8E-07 55.0 7.8 66 158-223 4-81 (284)
35 COG0220 Predicted S-adenosylme 95.8 0.056 1.2E-06 50.4 9.2 67 161-227 98-169 (227)
36 COG4121 Uncharacterized conser 95.6 0.014 3E-07 55.2 4.5 61 160-222 145-208 (252)
37 COG2518 Pcm Protein-L-isoaspar 95.6 0.029 6.3E-07 51.7 6.2 77 115-223 94-170 (209)
38 PRK13699 putative methylase; P 95.4 0.05 1.1E-06 50.5 7.2 60 163-222 2-72 (227)
39 PRK11188 rrmJ 23S rRNA methylt 95.3 0.047 1E-06 49.9 6.6 84 161-249 91-187 (209)
40 PRK11783 rlmL 23S rRNA m(2)G24 95.2 0.068 1.5E-06 57.5 8.3 64 158-223 586-657 (702)
41 PLN03075 nicotianamine synthas 95.1 0.087 1.9E-06 51.0 8.0 87 113-222 147-233 (296)
42 TIGR00438 rrmJ cell division p 94.9 0.12 2.6E-06 45.9 7.9 80 161-244 72-164 (188)
43 TIGR02469 CbiT precorrin-6Y C5 94.8 0.039 8.5E-07 44.5 4.3 54 161-222 69-122 (124)
44 TIGR02752 MenG_heptapren 2-hep 94.8 0.21 4.5E-06 45.5 9.4 55 161-221 96-150 (231)
45 PF13578 Methyltransf_24: Meth 94.7 0.011 2.5E-07 47.3 0.6 56 160-220 48-103 (106)
46 TIGR03533 L3_gln_methyl protei 94.6 0.18 3.9E-06 48.3 8.7 60 161-223 172-252 (284)
47 PF05175 MTS: Methyltransferas 94.5 0.02 4.4E-07 50.3 1.9 55 163-220 83-138 (170)
48 TIGR00080 pimt protein-L-isoas 94.5 0.13 2.8E-06 46.8 7.2 60 147-222 118-177 (215)
49 TIGR00138 gidB 16S rRNA methyl 94.2 0.16 3.4E-06 45.4 7.1 53 161-224 92-144 (181)
50 PRK00377 cbiT cobalt-precorrin 94.0 0.17 3.7E-06 45.4 6.9 70 161-242 92-161 (198)
51 PRK04266 fibrillarin; Provisio 93.9 0.3 6.5E-06 45.3 8.5 77 161-244 120-204 (226)
52 PRK01544 bifunctional N5-gluta 93.7 0.3 6.6E-06 50.6 9.0 67 161-227 397-467 (506)
53 PF03602 Cons_hypoth95: Conser 93.6 0.07 1.5E-06 47.9 3.6 60 161-224 92-155 (183)
54 PRK14904 16S rRNA methyltransf 93.6 0.4 8.7E-06 48.7 9.4 62 162-226 302-381 (445)
55 TIGR00446 nop2p NOL1/NOP2/sun 93.5 0.36 7.7E-06 45.6 8.4 80 161-244 122-219 (264)
56 PRK11805 N5-glutamine S-adenos 93.5 0.62 1.3E-05 45.2 10.1 60 161-223 184-264 (307)
57 PF01135 PCMT: Protein-L-isoas 93.4 0.1 2.3E-06 47.9 4.3 60 147-222 113-172 (209)
58 cd02440 AdoMet_MTases S-adenos 93.1 0.25 5.3E-06 37.0 5.4 59 159-221 45-103 (107)
59 PRK13942 protein-L-isoaspartat 93.0 0.29 6.2E-06 44.7 6.6 50 161-222 127-176 (212)
60 PLN02232 ubiquinone biosynthes 92.9 0.18 3.9E-06 43.9 5.0 55 161-221 26-80 (160)
61 PRK08287 cobalt-precorrin-6Y C 92.9 0.68 1.5E-05 40.9 8.8 73 161-249 81-154 (187)
62 TIGR00308 TRM1 tRNA(guanine-26 92.8 0.19 4.1E-06 50.2 5.6 51 162-221 96-146 (374)
63 PRK00107 gidB 16S rRNA methylt 92.7 1.2 2.6E-05 40.1 10.2 52 162-224 96-147 (187)
64 PRK14903 16S rRNA methyltransf 92.7 0.38 8.2E-06 48.8 7.7 62 162-224 289-368 (431)
65 PTZ00146 fibrillarin; Provisio 92.5 0.88 1.9E-05 44.1 9.5 98 161-269 181-286 (293)
66 PF02353 CMAS: Mycolic acid cy 92.4 0.15 3.3E-06 48.7 4.1 55 160-222 111-166 (273)
67 COG0742 N6-adenine-specific me 92.4 0.35 7.5E-06 43.9 6.1 60 160-223 92-155 (187)
68 COG2242 CobL Precorrin-6B meth 92.1 0.66 1.4E-05 42.1 7.6 71 158-242 81-151 (187)
69 PRK14901 16S rRNA methyltransf 92.1 0.61 1.3E-05 47.3 8.3 61 162-222 304-384 (434)
70 PF08241 Methyltransf_11: Meth 92.0 0.095 2.1E-06 39.8 1.8 56 159-220 40-95 (95)
71 PRK13944 protein-L-isoaspartat 91.9 0.21 4.5E-06 45.3 4.2 49 161-221 124-172 (205)
72 PRK14902 16S rRNA methyltransf 91.9 0.27 5.9E-06 49.9 5.5 62 162-224 302-381 (444)
73 TIGR03534 RF_mod_PrmC protein- 91.8 0.46 1E-05 43.5 6.5 59 161-222 137-217 (251)
74 PRK11036 putative S-adenosyl-L 91.7 0.41 9E-06 44.6 6.2 58 160-222 92-149 (255)
75 PRK11933 yebU rRNA (cytosine-C 91.6 0.65 1.4E-05 47.8 7.9 61 161-222 164-242 (470)
76 PRK01683 trans-aconitate 2-met 91.5 0.36 7.8E-06 44.8 5.4 55 161-222 76-130 (258)
77 PRK07402 precorrin-6B methylas 91.5 0.84 1.8E-05 40.7 7.7 55 161-224 90-144 (196)
78 PRK14967 putative methyltransf 91.0 0.81 1.8E-05 41.8 7.2 56 162-220 85-157 (223)
79 PRK04338 N(2),N(2)-dimethylgua 90.6 0.59 1.3E-05 46.8 6.4 49 162-220 108-156 (382)
80 PF05401 NodS: Nodulation prot 90.5 0.46 9.9E-06 43.6 5.0 77 160-244 88-173 (201)
81 PRK10901 16S rRNA methyltransf 90.3 0.9 2E-05 45.9 7.4 64 162-225 294-375 (427)
82 PF13847 Methyltransf_31: Meth 90.1 0.29 6.3E-06 41.7 3.3 55 161-222 54-110 (152)
83 PRK10909 rsmD 16S rRNA m(2)G96 89.9 1.1 2.4E-05 40.8 7.0 55 162-222 103-159 (199)
84 TIGR00563 rsmB ribosomal RNA s 89.9 0.82 1.8E-05 46.2 6.8 63 163-225 291-371 (426)
85 PRK15001 SAM-dependent 23S rib 89.9 0.51 1.1E-05 47.3 5.2 73 161-244 281-355 (378)
86 COG4123 Predicted O-methyltran 89.8 1.4 2.9E-05 41.8 7.7 80 160-244 94-188 (248)
87 PRK14103 trans-aconitate 2-met 89.5 0.53 1.2E-05 43.8 4.8 55 161-222 72-126 (255)
88 PF13649 Methyltransf_25: Meth 89.3 0.4 8.8E-06 37.9 3.3 49 160-216 48-101 (101)
89 PRK09328 N5-glutamine S-adenos 89.2 1.1 2.4E-05 41.7 6.7 61 160-223 157-239 (275)
90 PLN02244 tocopherol O-methyltr 89.0 0.63 1.4E-05 45.6 5.1 56 160-221 167-222 (340)
91 TIGR01177 conserved hypothetic 88.3 1.3 2.8E-05 43.1 6.7 59 163-223 232-295 (329)
92 PTZ00098 phosphoethanolamine N 88.1 0.61 1.3E-05 44.0 4.2 57 160-221 98-155 (263)
93 PF02005 TRM: N2,N2-dimethylgu 88.0 0.63 1.4E-05 46.6 4.3 55 158-221 99-153 (377)
94 PRK09489 rsmC 16S ribosomal RN 87.9 0.74 1.6E-05 45.4 4.8 57 162-222 246-303 (342)
95 PLN02233 ubiquinone biosynthes 87.6 1.1 2.3E-05 42.3 5.4 55 160-220 126-180 (261)
96 PRK00312 pcm protein-L-isoaspa 87.4 0.68 1.5E-05 41.8 3.9 60 147-222 116-175 (212)
97 TIGR00536 hemK_fam HemK family 87.2 1.4 3E-05 42.0 6.0 60 161-223 165-245 (284)
98 PRK11088 rrmA 23S rRNA methylt 86.9 0.76 1.6E-05 43.3 4.0 49 161-222 133-181 (272)
99 KOG1709 Guanidinoacetate methy 86.4 0.87 1.9E-05 42.5 4.0 58 159-220 147-204 (271)
100 COG0144 Sun tRNA and rRNA cyto 86.4 2.3 5E-05 42.1 7.3 64 162-225 209-291 (355)
101 PHA03411 putative methyltransf 86.3 1.8 3.9E-05 41.7 6.2 78 161-241 109-203 (279)
102 PF06460 NSP13: Coronavirus NS 86.2 2 4.4E-05 41.0 6.4 113 146-270 82-209 (299)
103 smart00828 PKS_MT Methyltransf 86.2 0.7 1.5E-05 41.8 3.3 54 160-221 49-103 (224)
104 KOG1661 Protein-L-isoaspartate 86.1 0.91 2E-05 42.2 3.9 52 157-220 140-191 (237)
105 PRK11873 arsM arsenite S-adeno 86.1 1.9 4.1E-05 40.4 6.3 54 161-220 128-181 (272)
106 TIGR02072 BioC biotin biosynth 86.1 1.1 2.3E-05 40.3 4.4 55 161-221 80-134 (240)
107 PLN02396 hexaprenyldihydroxybe 85.7 1.2 2.6E-05 43.6 4.8 55 161-222 180-235 (322)
108 PRK14968 putative methyltransf 85.5 3.4 7.3E-05 35.8 7.2 62 160-224 72-150 (188)
109 TIGR03704 PrmC_rel_meth putati 85.5 1.7 3.6E-05 40.9 5.5 60 163-222 135-216 (251)
110 TIGR01934 MenG_MenH_UbiE ubiqu 85.5 1.5 3.3E-05 39.0 5.0 55 160-220 87-141 (223)
111 TIGR00537 hemK_rel_arch HemK-r 85.2 2.9 6.3E-05 36.6 6.7 57 161-221 66-139 (179)
112 COG2230 Cfa Cyclopropane fatty 85.0 0.99 2.1E-05 43.5 3.8 54 161-222 122-176 (283)
113 PF02475 Met_10: Met-10+ like- 84.9 0.83 1.8E-05 41.8 3.1 49 160-219 151-199 (200)
114 KOG1271 Methyltransferases [Ge 84.5 2.7 5.9E-05 38.4 6.1 59 162-224 119-183 (227)
115 TIGR00095 RNA methyltransferas 84.3 3.4 7.4E-05 37.1 6.8 57 161-222 99-159 (189)
116 PF08242 Methyltransf_12: Meth 82.8 0.95 2.1E-05 35.4 2.3 34 180-218 65-99 (99)
117 PRK05134 bifunctional 3-demeth 82.5 2.9 6.2E-05 38.0 5.6 55 162-221 96-150 (233)
118 TIGR00406 prmA ribosomal prote 82.3 3.8 8.2E-05 39.1 6.6 69 161-244 209-277 (288)
119 PLN02336 phosphoethanolamine N 82.2 1.5 3.2E-05 44.7 3.9 56 160-220 82-140 (475)
120 KOG1562 Spermidine synthase [A 81.9 0.36 7.8E-06 46.9 -0.6 132 81-222 119-293 (337)
121 KOG4300 Predicted methyltransf 81.8 1.9 4.1E-05 40.2 4.0 57 160-221 124-181 (252)
122 KOG1253 tRNA methyltransferase 81.0 2.1 4.6E-05 44.2 4.5 53 160-220 160-214 (525)
123 COG2520 Predicted methyltransf 80.7 19 0.00042 35.7 11.0 96 160-266 237-335 (341)
124 PRK00216 ubiE ubiquinone/menaq 80.6 3 6.4E-05 37.5 5.0 55 160-220 102-156 (239)
125 PRK15451 tRNA cmo(5)U34 methyl 80.5 3.3 7.1E-05 38.5 5.4 56 160-221 108-163 (247)
126 PLN02336 phosphoethanolamine N 80.3 2.5 5.3E-05 43.0 4.8 55 160-221 313-368 (475)
127 TIGR00740 methyltransferase, p 80.0 2.5 5.5E-05 38.8 4.4 67 146-221 94-160 (239)
128 PF01209 Ubie_methyltran: ubiE 79.5 0.97 2.1E-05 42.1 1.4 55 161-221 98-152 (233)
129 PRK11705 cyclopropane fatty ac 79.3 3.5 7.7E-05 41.2 5.5 53 162-222 214-267 (383)
130 PRK13943 protein-L-isoaspartat 79.2 2.5 5.3E-05 41.5 4.2 50 161-222 131-180 (322)
131 PRK15068 tRNA mo(5)U34 methylt 78.3 4.5 9.8E-05 39.4 5.8 54 160-221 171-225 (322)
132 COG1867 TRM1 N2,N2-dimethylgua 77.7 4.8 0.0001 40.3 5.7 51 161-220 102-152 (380)
133 PRK08317 hypothetical protein; 77.4 3.5 7.7E-05 36.7 4.5 56 160-221 68-123 (241)
134 PRK10258 biotin biosynthesis p 77.3 5.6 0.00012 36.7 5.8 53 163-221 87-139 (251)
135 PRK01544 bifunctional N5-gluta 77.1 6.5 0.00014 40.9 6.8 59 160-221 188-268 (506)
136 TIGR00452 methyltransferase, p 76.8 6.4 0.00014 38.5 6.3 54 160-221 170-224 (314)
137 PF05185 PRMT5: PRMT5 arginine 76.7 1.4 3.1E-05 45.0 1.9 56 160-220 240-295 (448)
138 COG2226 UbiE Methylase involve 76.6 6.3 0.00014 37.1 5.9 53 163-221 103-155 (238)
139 PF11899 DUF3419: Protein of u 76.5 4 8.7E-05 41.0 4.9 72 146-222 262-334 (380)
140 PRK14966 unknown domain/N5-glu 76.2 7 0.00015 39.8 6.6 59 161-220 300-379 (423)
141 TIGR01983 UbiG ubiquinone bios 76.2 4.8 0.0001 36.1 5.0 54 162-221 94-148 (224)
142 PLN02490 MPBQ/MSBQ methyltrans 76.2 5.6 0.00012 39.3 5.8 55 160-220 159-213 (340)
143 COG3963 Phospholipid N-methylt 75.5 5.7 0.00012 35.9 5.0 64 161-226 94-160 (194)
144 COG2227 UbiG 2-polyprenyl-3-me 75.1 6.9 0.00015 37.0 5.7 53 163-222 108-161 (243)
145 PRK11207 tellurite resistance 74.7 6.4 0.00014 35.3 5.3 54 161-219 78-131 (197)
146 PRK00517 prmA ribosomal protei 73.9 5.9 0.00013 36.9 5.1 70 181-269 179-249 (250)
147 PRK06922 hypothetical protein; 73.9 5.3 0.00012 42.9 5.2 62 161-222 467-537 (677)
148 TIGR00479 rumA 23S rRNA (uraci 73.9 16 0.00035 36.8 8.5 54 161-221 340-395 (431)
149 PRK10742 putative methyltransf 73.6 4.2 9E-05 38.6 3.9 32 161-193 145-176 (250)
150 TIGR02085 meth_trns_rumB 23S r 71.8 15 0.00033 36.5 7.7 53 162-222 282-334 (374)
151 PRK03522 rumB 23S rRNA methylu 70.7 18 0.00039 34.9 7.8 54 161-222 221-274 (315)
152 PF07942 N2227: N2227-like pro 69.3 2.4 5.1E-05 40.7 1.3 58 160-221 143-201 (270)
153 KOG0780 Signal recognition par 68.5 7.5 0.00016 39.4 4.6 47 174-222 176-222 (483)
154 TIGR03840 TMPT_Se_Te thiopurin 67.8 3.9 8.5E-05 37.5 2.4 57 160-219 93-149 (213)
155 PF13489 Methyltransf_23: Meth 67.7 4.4 9.5E-05 33.8 2.5 39 179-222 76-115 (161)
156 COG0293 FtsJ 23S rRNA methylas 66.9 28 0.00061 32.1 7.7 83 161-248 85-180 (205)
157 smart00650 rADc Ribosomal RNA 66.5 8.3 0.00018 33.5 4.1 56 160-224 58-115 (169)
158 PF02527 GidB: rRNA small subu 65.7 14 0.00031 33.2 5.5 54 161-225 98-151 (184)
159 PF04378 RsmJ: Ribosomal RNA s 64.7 19 0.00042 34.0 6.4 75 159-243 101-183 (245)
160 smart00138 MeTrc Methyltransfe 64.7 6.8 0.00015 37.0 3.4 55 161-220 185-240 (264)
161 COG4106 Tam Trans-aconitate me 64.6 10 0.00023 35.6 4.4 58 160-224 74-131 (257)
162 COG2961 ComJ Protein involved 63.7 29 0.00062 33.2 7.2 74 159-242 132-213 (279)
163 PLN02672 methionine S-methyltr 63.3 39 0.00084 38.6 9.4 62 161-223 184-279 (1082)
164 COG4976 Predicted methyltransf 62.6 3 6.5E-05 39.5 0.5 55 164-223 171-226 (287)
165 PRK12335 tellurite resistance 59.7 8.9 0.00019 36.4 3.2 54 162-220 168-221 (287)
166 PRK13255 thiopurine S-methyltr 59.6 5.3 0.00011 36.8 1.6 54 159-217 95-150 (218)
167 PF01728 FtsJ: FtsJ-like methy 59.5 24 0.00052 30.7 5.8 64 180-249 90-161 (181)
168 TIGR00477 tehB tellurite resis 59.5 14 0.00031 32.9 4.4 51 163-219 79-130 (195)
169 PRK05031 tRNA (uracil-5-)-meth 59.2 56 0.0012 32.3 8.9 52 162-222 255-320 (362)
170 PRK13168 rumA 23S rRNA m(5)U19 58.8 27 0.00059 35.4 6.8 54 161-222 345-400 (443)
171 COG4098 comFA Superfamily II D 58.5 11 0.00023 37.8 3.5 73 146-222 156-240 (441)
172 KOG0822 Protein kinase inhibit 58.1 8.4 0.00018 40.4 2.9 60 160-223 420-479 (649)
173 PF04445 SAM_MT: Putative SAM- 58.1 3 6.5E-05 39.2 -0.3 29 161-190 132-160 (234)
174 COG2813 RsmC 16S RNA G1207 met 57.7 7.5 0.00016 37.9 2.3 71 164-248 211-284 (300)
175 KOG3045 Predicted RNA methylas 57.1 31 0.00067 33.4 6.2 40 202-244 244-285 (325)
176 PHA03412 putative methyltransf 55.6 19 0.00042 33.9 4.7 56 161-220 97-160 (241)
177 KOG1099 SAM-dependent methyltr 54.8 43 0.00092 31.9 6.7 94 172-276 106-211 (294)
178 PF08351 DUF1726: Domain of un 54.4 15 0.00033 29.4 3.2 38 179-223 9-46 (92)
179 PF01189 Nol1_Nop2_Fmu: NOL1/N 53.4 39 0.00084 32.3 6.5 83 160-244 135-239 (283)
180 TIGR02716 C20_methyl_CrtF C-20 53.4 22 0.00047 33.9 4.8 56 160-221 198-253 (306)
181 TIGR03438 probable methyltrans 52.9 20 0.00044 34.4 4.5 57 162-220 116-175 (301)
182 KOG3010 Methyltransferase [Gen 52.5 25 0.00053 33.5 4.8 88 146-244 70-161 (261)
183 PF05724 TPMT: Thiopurine S-me 51.7 11 0.00025 34.7 2.4 56 159-217 95-150 (218)
184 PF01555 N6_N4_Mtase: DNA meth 50.6 25 0.00055 30.9 4.5 26 202-227 36-61 (231)
185 PRK04296 thymidine kinase; Pro 47.6 24 0.00051 31.5 3.8 45 168-220 66-110 (190)
186 PF05891 Methyltransf_PK: AdoM 46.3 10 0.00023 35.2 1.3 54 160-220 102-159 (218)
187 PF03059 NAS: Nicotianamine sy 46.0 38 0.00082 32.6 5.1 58 160-222 173-230 (276)
188 PF06859 Bin3: Bicoid-interact 45.0 10 0.00022 31.7 0.8 21 202-222 24-44 (110)
189 COG0863 DNA modification methy 44.7 40 0.00086 31.5 5.0 64 160-223 14-100 (302)
190 TIGR02143 trmA_only tRNA (urac 44.6 1.7E+02 0.0037 28.8 9.7 52 162-222 246-311 (353)
191 PF07090 DUF1355: Protein of u 44.5 9.9 0.00021 34.2 0.8 45 180-224 66-110 (177)
192 PF09445 Methyltransf_15: RNA 42.9 21 0.00046 31.6 2.7 33 160-194 47-80 (163)
193 COG4798 Predicted methyltransf 42.9 21 0.00045 33.1 2.6 21 200-220 144-164 (238)
194 PF03848 TehB: Tellurite resis 40.7 20 0.00042 32.7 2.1 53 163-220 79-131 (192)
195 KOG2940 Predicted methyltransf 39.8 17 0.00037 34.6 1.6 56 159-220 115-172 (325)
196 PF05711 TylF: Macrocin-O-meth 39.8 27 0.00059 33.0 3.0 59 157-221 153-211 (248)
197 PF08003 Methyltransf_9: Prote 39.6 63 0.0014 31.7 5.5 47 168-221 171-218 (315)
198 COG1041 Predicted DNA modifica 39.3 47 0.001 33.1 4.7 52 169-223 254-311 (347)
199 KOG1540 Ubiquinone biosynthesi 39.3 48 0.001 32.0 4.5 56 159-220 157-212 (296)
200 PTZ00357 methyltransferase; Pr 38.4 71 0.0015 35.1 6.0 56 160-217 762-830 (1072)
201 COG4627 Uncharacterized protei 38.4 47 0.001 29.7 4.1 18 203-220 67-84 (185)
202 PF05219 DREV: DREV methyltran 37.7 32 0.00068 33.0 3.1 52 160-220 134-186 (265)
203 PF05063 MT-A70: MT-A70 ; Int 37.6 1.1E+02 0.0023 27.0 6.3 47 182-228 1-58 (176)
204 PF14314 Methyltrans_Mon: Viru 37.3 1.3E+02 0.0029 32.6 8.0 92 174-271 408-502 (675)
205 PF07669 Eco57I: Eco57I restri 37.0 97 0.0021 24.9 5.5 39 202-242 33-72 (106)
206 COG1236 YSH1 Predicted exonucl 34.3 57 0.0012 33.2 4.6 57 182-242 181-239 (427)
207 KOG2899 Predicted methyltransf 33.9 64 0.0014 30.9 4.4 46 172-220 158-207 (288)
208 KOG2915 tRNA(1-methyladenosine 33.3 1.4E+02 0.003 29.2 6.6 70 160-244 156-229 (314)
209 PF01170 UPF0020: Putative RNA 32.4 44 0.00096 29.6 3.1 59 160-221 87-150 (179)
210 PF00072 Response_reg: Respons 32.4 1.3E+02 0.0029 22.9 5.5 49 166-220 28-76 (112)
211 COG0489 Mrp ATPases involved i 32.3 90 0.0019 29.5 5.3 53 160-220 145-197 (265)
212 PF07021 MetW: Methionine bios 32.3 34 0.00075 31.2 2.3 30 161-190 55-84 (193)
213 KOG2798 Putative trehalase [Ca 31.1 31 0.00068 34.1 2.0 56 163-222 240-296 (369)
214 COG0357 GidB Predicted S-adeno 30.4 1E+02 0.0022 28.6 5.1 63 150-222 106-168 (215)
215 PRK13256 thiopurine S-methyltr 29.5 51 0.0011 30.7 3.0 58 159-220 101-161 (226)
216 COG2890 HemK Methylase of poly 28.9 1E+02 0.0022 29.4 5.1 24 200-223 216-239 (280)
217 PF10237 N6-adenineMlase: Prob 27.8 1.1E+02 0.0024 27.0 4.8 33 180-220 85-121 (162)
218 PF06325 PrmA: Ribosomal prote 27.4 71 0.0015 31.0 3.7 71 180-269 224-294 (295)
219 TIGR03029 EpsG chain length de 26.5 1.2E+02 0.0027 28.1 5.1 19 172-191 204-222 (274)
220 COG4565 CitB Response regulato 26.2 2.2E+02 0.0048 26.6 6.5 48 167-222 35-82 (224)
221 KOG2356 Transcriptional activa 26.1 1.3E+02 0.0028 29.6 5.1 67 161-228 162-239 (366)
222 cd00550 ArsA_ATPase Oxyanion-t 25.4 94 0.002 29.0 4.1 34 180-214 123-157 (254)
223 KOG2198 tRNA cytosine-5-methyl 25.4 1.3E+02 0.0027 30.4 5.1 65 180-244 235-320 (375)
224 KOG4589 Cell division protein 25.2 2.9E+02 0.0062 25.7 6.9 63 177-249 132-206 (232)
225 TIGR01627 A_thal_3515 uncharac 24.3 98 0.0021 28.9 3.8 16 180-195 137-152 (225)
226 PRK11475 DNA-binding transcrip 24.0 2.8E+02 0.006 25.1 6.8 53 166-220 22-74 (207)
227 COG5379 BtaA S-adenosylmethion 23.8 1.1E+02 0.0023 30.4 4.1 55 161-220 307-364 (414)
228 PRK11783 rlmL 23S rRNA m(2)G24 23.2 1.3E+02 0.0027 32.7 5.1 59 161-221 283-346 (702)
229 COG0541 Ffh Signal recognition 23.0 70 0.0015 32.9 2.8 50 166-220 170-219 (451)
230 COG3288 PntA NAD/NADP transhyd 22.5 1.1E+02 0.0025 30.2 4.0 37 180-220 243-279 (356)
231 PF01269 Fibrillarin: Fibrilla 22.2 1.2E+02 0.0027 28.4 4.1 79 160-244 121-206 (229)
232 PRK10046 dpiA two-component re 22.1 3.9E+02 0.0085 23.7 7.4 51 165-220 34-84 (225)
233 TIGR03552 F420_cofC 2-phospho- 21.9 1.8E+02 0.004 25.3 5.1 47 215-270 92-138 (195)
234 COG2264 PrmA Ribosomal protein 21.8 2.6E+02 0.0057 27.3 6.4 54 180-244 228-282 (300)
235 PF00891 Methyltransf_2: O-met 21.6 1.6E+02 0.0036 26.7 4.9 53 160-220 142-197 (241)
236 PF02384 N6_Mtase: N-6 DNA Met 21.1 1.1E+02 0.0024 29.0 3.8 81 161-241 105-203 (311)
237 COG2197 CitB Response regulato 21.1 5.1E+02 0.011 23.3 7.9 48 162-215 27-74 (211)
238 cd03065 PDI_b_Calsequestrin_N 21.0 68 0.0015 26.8 2.0 39 184-222 29-71 (120)
239 PRK11760 putative 23S rRNA C24 20.9 69 0.0015 32.0 2.3 48 158-215 249-296 (357)
240 cd02035 ArsA ArsA ATPase funct 20.6 1.3E+02 0.0029 27.1 4.0 52 181-241 113-167 (217)
241 KOG2484 GTPase [General functi 20.3 2.2E+02 0.0048 29.1 5.7 60 181-249 146-211 (435)
242 PHA02754 hypothetical protein; 20.1 87 0.0019 23.3 2.1 19 202-220 17-35 (67)
243 TIGR00347 bioD dethiobiotin sy 20.1 2.6E+02 0.0056 23.6 5.5 48 171-221 90-137 (166)
No 1
>PLN02366 spermidine synthase
Probab=100.00 E-value=7.6e-63 Score=474.11 Aligned_cols=271 Identities=75% Similarity=1.330 Sum_probs=240.0
Q ss_pred ccCCcccccccccccccceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCe
Q 019882 38 ASAPELDAKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGI 117 (334)
Q Consensus 38 ~~~~~~~~~~~~~~~~~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~ 117 (334)
|++|+++.+||..++++||+|. .++|++.+++++|+++|++++|+||+|+|++++.+|++|+|||.
T Consensus 1 ~~~~~~~~~~~~~~~~~w~~e~--------------~~~~~~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~ 66 (308)
T PLN02366 1 AAAPESEAKCHSTVIPGWFSEI--------------SPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGV 66 (308)
T ss_pred CCCCCCCccccchhhhceEeec--------------ccCCCCceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCE
Confidence 5789999999999999999997 34679999999999999999999999999999999999999999
Q ss_pred EEeeccchhHHHHHhhhhccccCCChhh-----------------------------------hHHhhCcccccCCCCCC
Q 019882 118 VQLTEKDECAYQEMIAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPR 162 (334)
Q Consensus 118 iQ~te~DEf~YhEmlvh~pl~~hp~Pkr-----------------------------------vak~~fp~l~~~~~dpR 162 (334)
+|++++||+.|||||+|+||+.||+|++ +||+|||.++.+++|||
T Consensus 67 ~q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpR 146 (308)
T PLN02366 67 IQLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPR 146 (308)
T ss_pred eeecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCc
Confidence 9999999999999999999999999999 58899998876789999
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHh
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET 242 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~v 242 (334)
++++++||++||++.++++||+||+|+++|.+++.+||+++||+.++++|+|||++++|++|+|.+.+.++.++++++++
T Consensus 147 v~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~ 226 (308)
T PLN02366 147 VNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRET 226 (308)
T ss_pred eEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHH
Confidence 99999999999987645689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEEEeeecCCCcEEEEEeecCCCCCCCCCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHHHHhhcCC
Q 019882 243 FKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVLG 322 (334)
Q Consensus 243 F~~~v~~~~~~vPsyp~g~w~f~laSk~~~~~~~~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l~~~~ 322 (334)
|+.+|.+|.+.||+||+|.|||++||++.+..++..|.+..+.++.......+|||||+++|+|+|+||+|++++|+...
T Consensus 227 F~~~v~~~~~~vPsy~~g~w~f~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~l~yy~~~~h~~~f~lp~~~~~~l~~~~ 306 (308)
T PLN02366 227 FKGSVNYAWTTVPTYPSGVIGFVLCSKEGPAVDFKHPVNPIDKLEGAGKAKRPLKFYNSEVHRAAFCLPSFAKRELESLL 306 (308)
T ss_pred CCCceeEEEecCCCcCCCceEEEEEECCCccccccccccccchhhhhhcccCCCeEECHHHHHHHhcChHHHHHHHHhcc
Confidence 95488999999999999999999999974333444443332211100011246899999999999999999999998653
No 2
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-62 Score=457.58 Aligned_cols=296 Identities=44% Similarity=0.746 Sum_probs=270.4
Q ss_pred CCCcccccccccCCccCCCCCCCcccceeeeecccCCcccccccccccccceeecccCCCCcccccccCCCCCCCceEEE
Q 019882 5 EGKGLGCQKTMDGKESNKNGSAGAIPSCCLKARASAPELDAKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (334)
...+|.|+.. +++++.+ .+|+++.+.-....+.+|.++.+|||.|.+.. +++|||+++++
T Consensus 4 ~~~~l~~~~~--~~ad~~~-------~~~~~~~~~~q~~~~s~h~~i~~GwF~e~~~~-----------~~i~pg~a~tL 63 (337)
T KOG1562|consen 4 QTILLDFTLD--AKADEEA-------LRNELEQLFPQLELESSHPSIENGWFAEIHNK-----------KDIWPGQALTL 63 (337)
T ss_pred eeeeeeeecC--CcCCcch-------hhhhHhhhchhhhhccccCcccCCeEeeecCC-----------CCCCCCceeEE
Confidence 3456666555 5555544 89999999999998999999999999999653 35899999999
Q ss_pred eeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHHhhhhccccCCChhh-------------------
Q 019882 85 KVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT------------------- 145 (334)
Q Consensus 85 ~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkr------------------- 145 (334)
+|+++|++++|.||++.|+++..+|++|+|||++|.+++|||.|+||++|.|+++||||++
T Consensus 64 kVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH~ 143 (337)
T KOG1562|consen 64 KVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHK 143 (337)
T ss_pred EeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccccccCCCCCeEEEEecCCccceeeeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHH
Q 019882 146 ----------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIA 209 (334)
Q Consensus 146 ----------------vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~ 209 (334)
++++|+|.++++|++|||++++|||+.|++..+.+.|||||+|++||++|+..||.+.||+.++
T Consensus 144 ~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~ 223 (337)
T KOG1562|consen 144 SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVL 223 (337)
T ss_pred cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999877899999999999999999999999999999
Q ss_pred HhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEEEEeecCCCCCCCCCCCCchhhcccc
Q 019882 210 KALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGA 289 (334)
Q Consensus 210 ~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f~laSk~~~~~~~~~p~~~~~~~~~~ 289 (334)
++||+||++++|+++.|++.++++...+..+.+|+ .+.|.++.+||||+|.+||.+|||..+..++..|.++++..+..
T Consensus 224 ~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~-~t~ya~ttvPTypsg~igf~l~s~~~~~~~~~~p~n~i~~~e~~ 302 (337)
T KOG1562|consen 224 DALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFD-LTAYAITTVPTYPSGRIGFMLCSKLKPDGKYKTPGNPITCKEQL 302 (337)
T ss_pred HhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcC-ccceeeecCCCCccceEEEEEecccCCCCCccCCCCccCHHHHH
Confidence 99999999999999999999999999999999999 89999999999999999999999866677999999888754433
Q ss_pred ccCCCCCceeCHHHHHHHhcCcHHHHHHhhcC
Q 019882 290 DKHKRELRFYNSEIHSAAFALPAFLKREVSVL 321 (334)
Q Consensus 290 ~~~~~~lryYn~~ih~aaF~LP~~~~~~l~~~ 321 (334)
.....+|+|||.++|+|+|+||.|+++.+...
T Consensus 303 ~l~~~~L~yyn~e~h~aaf~lPsf~~k~~~~~ 334 (337)
T KOG1562|consen 303 SLYEEQLLYYNVEFHSAAFVLPSFAEKWLFYQ 334 (337)
T ss_pred hhhhhhhccCCchhceeeeechHHHHHHHHHH
Confidence 33345789999999999999999999998653
No 3
>PRK00536 speE spermidine synthase; Provisional
Probab=100.00 E-value=3.1e-58 Score=432.23 Aligned_cols=219 Identities=20% Similarity=0.257 Sum_probs=193.0
Q ss_pred CCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHHhhhhccccCCChhh-----------
Q 019882 77 WPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT----------- 145 (334)
Q Consensus 77 ~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkr----------- 145 (334)
||+.+++++|+++|++++|+||+|+|++|+.|||+|+|| .+|+|++|||+|||||+||||++||+|||
T Consensus 8 ~~~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~ 86 (262)
T PRK00536 8 TPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLEL 86 (262)
T ss_pred CCCceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEEcCCchHH
Confidence 478999999999999999999999999999999999999 66679999999999999999999999999
Q ss_pred ----------------------hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHH
Q 019882 146 ----------------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKP 203 (334)
Q Consensus 146 ----------------------vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~e 203 (334)
+||+|||.++++|+|||+++++ ++++...++|||||+|++ |+.+
T Consensus 87 ~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~~~~~fDVIIvDs~---------~~~~ 152 (262)
T PRK00536 87 AHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLDLDIKKYDLIICLQE---------PDIH 152 (262)
T ss_pred HHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhhccCCcCCEEEEcCC---------CChH
Confidence 6999999999899999999997 344443468999999974 6789
Q ss_pred HHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEEEEeecCCCCCCCCCCCCch
Q 019882 204 FFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPI 283 (334)
Q Consensus 204 Fy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f~laSk~~~~~~~~~p~~~~ 283 (334)
||+.|+++|+|||++|+|++||+++++.++.+.++++++|+ .|.+|.++||+| |.|||++|||+.+|..... .
T Consensus 153 fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~-~v~~y~~~vp~~--g~wgf~~aS~~~~p~~~~~----~ 225 (262)
T PRK00536 153 KIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS-IAMPFVAPLRIL--SNKGYIYASFKTHPLKDLM----L 225 (262)
T ss_pred HHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC-ceEEEEecCCCc--chhhhheecCCCCCccchh----h
Confidence 99999999999999999999999999999999999999999 788999999999 7999999999865542110 0
Q ss_pred hhccccccCCCCCceeCHHHHHHHhcCcHHHHHHhhcC
Q 019882 284 EKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVL 321 (334)
Q Consensus 284 ~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l~~~ 321 (334)
++.. ....|||||+++|+|+|+||+|++++|+..
T Consensus 226 ---~~~~-~~~~lryy~~~~h~a~F~lP~~v~~~l~~~ 259 (262)
T PRK00536 226 ---QKIE-ALKSVRYYNEDIHRAAFALPKNLQEVFKDN 259 (262)
T ss_pred ---hhhc-ccCCceeeCHHHHHHHhcCcHHHHHHHHHh
Confidence 1111 113489999999999999999999999753
No 4
>PRK00811 spermidine synthase; Provisional
Probab=100.00 E-value=2.3e-55 Score=417.88 Aligned_cols=246 Identities=39% Similarity=0.720 Sum_probs=216.1
Q ss_pred cccceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHH
Q 019882 52 VSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEM 131 (334)
Q Consensus 52 ~~~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEm 131 (334)
++.||+|.. +|+.+++++++++|++++|+||+|+|++++.+|++|+|||.+|++++||++||||
T Consensus 2 ~~~w~~e~~----------------~~~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~ 65 (283)
T PRK00811 2 MELWFTETL----------------TDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEM 65 (283)
T ss_pred CCcceeecc----------------CCccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHH
Confidence 346998863 4789999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCCChhh-----------------------------------hHHhhCcccccC-CCCCCeEEEEchHHHHHh
Q 019882 132 IAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVG-FEDPRVRLHIGDAVEFLR 175 (334)
Q Consensus 132 lvh~pl~~hp~Pkr-----------------------------------vak~~fp~l~~~-~~dpRv~viv~Dg~~fL~ 175 (334)
|+|+|++.||+|++ +|++||+.++.+ ++|||++++++||++|++
T Consensus 66 l~h~~~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~ 145 (283)
T PRK00811 66 MTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA 145 (283)
T ss_pred hhhHHHhhCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh
Confidence 99999999999999 588999887655 589999999999999998
Q ss_pred hCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEee
Q 019882 176 QVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVP 255 (334)
Q Consensus 176 ~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vP 255 (334)
+. +++||+||+|++||.+++.+|||.+||+.|+++|+|||++++|+++++.+...++.+.++++++|+ .|.++...||
T Consensus 146 ~~-~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~~~~vp 223 (283)
T PRK00811 146 ET-ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFP-IVRPYQAAIP 223 (283)
T ss_pred hC-CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCC-CEEEEEeECC
Confidence 75 578999999999999998899999999999999999999999999999888899999999999999 7899999999
Q ss_pred ecCCCcEEEEEeecCCCCCCCCCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHHHHhh
Q 019882 256 TYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVS 319 (334)
Q Consensus 256 syp~g~w~f~laSk~~~~~~~~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l~ 319 (334)
+||+|.|+|++||+..++.. .|.+.+. ++......++||||+++|+|+|+||+|+|++|+
T Consensus 224 ~~~~~~w~f~~as~~~~~~~--~~~~~~~--~~~~~~~~~~~yy~~~~h~~~f~lp~~~~~~~~ 283 (283)
T PRK00811 224 TYPSGLWSFTFASKNDDLKF--LPLDVIE--ARFAERGIKTRYYNPELHKAAFALPQFVKDALK 283 (283)
T ss_pred cccCchheeEEeecCccccc--Cccccch--hhHhhccCCCeEECHHHHHHHhcCcHHHHHhhC
Confidence 99999999999999644321 1222111 111122236999999999999999999999874
No 5
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-55 Score=417.12 Aligned_cols=244 Identities=43% Similarity=0.740 Sum_probs=217.6
Q ss_pred cccceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHH
Q 019882 52 VSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEM 131 (334)
Q Consensus 52 ~~~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEm 131 (334)
++.||+|.++ |+.++.++|+++|++++|+||+|.|+++++||++|+|||.+|++++|||.||||
T Consensus 2 ~~~w~~e~~~----------------~~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEm 65 (282)
T COG0421 2 ADMWFTELYD----------------PGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEM 65 (282)
T ss_pred Cccceeeeec----------------ccccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHH
Confidence 4679999843 678999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCCChhh-----------------------------------hHHhhCcccccCCCCCCeEEEEchHHHHHhh
Q 019882 132 IAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ 176 (334)
Q Consensus 132 lvh~pl~~hp~Pkr-----------------------------------vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~ 176 (334)
++|+|+++||+||+ +||+|||..+.+.+|||++|+++||++||++
T Consensus 66 l~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~ 145 (282)
T COG0421 66 LAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD 145 (282)
T ss_pred HHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh
Confidence 99999999999977 6999999998776699999999999999999
Q ss_pred CCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeee
Q 019882 177 VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPT 256 (334)
Q Consensus 177 ~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPs 256 (334)
.+ ++|||||+|++||.||+..|||.|||+.|+++|+++||+++|++|||++.+.++.+.+.++.+|+ .+.+|...+|+
T Consensus 146 ~~-~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~-~~~~~~~~ipt 223 (282)
T COG0421 146 CE-EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFS-IVPPYVAPIPT 223 (282)
T ss_pred CC-CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhcc-ccccceeccce
Confidence 85 58999999999999999999999999999999999999999999999998999999999999999 78899999999
Q ss_pred cCCCcEEEEEeecC-CCCCCCCCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHHHHhh
Q 019882 257 YPSGIIGFLICSTE-GPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVS 319 (334)
Q Consensus 257 yp~g~w~f~laSk~-~~~~~~~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l~ 319 (334)
|++|.|+|+++|.+ .++. .+++.+.........++|||+++|.++|+||+|++++|+
T Consensus 224 ~~~g~~~f~~~s~~~~~~~------~~~~~~~~~~~~~~~~~yy~~~~h~~~f~lp~~~~~~~~ 281 (282)
T COG0421 224 YPSGFWGFIVASFNKAHPL------KSLDALQARALALLTLKYYNEDIHDAAFALPKNLQDELK 281 (282)
T ss_pred ecCCceEEEEeecCCCCcc------cchhHHHHHHhhhhhhccCcHHHhhhhhcCCcchhhhcc
Confidence 99999999999944 3322 222221111111245699999999999999999999875
No 6
>PLN02823 spermine synthase
Probab=100.00 E-value=2.5e-52 Score=405.35 Aligned_cols=248 Identities=30% Similarity=0.501 Sum_probs=212.4
Q ss_pred cccceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHH
Q 019882 52 VSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEM 131 (334)
Q Consensus 52 ~~~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEm 131 (334)
.+.||+|.. +++..++++++++|++++|+||+|+|++++.+|++|+|||.+|+++.||+.||||
T Consensus 29 ~~~w~~e~~----------------~~~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~~~de~~YhE~ 92 (336)
T PLN02823 29 KSLWYEEEI----------------EDDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSAEADEFVYHES 92 (336)
T ss_pred cCeeEeecc----------------CCCcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccccchHHHHHHH
Confidence 345999962 3788999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCCChhh-----------------------------------hHHhhCcccccCCCCCCeEEEEchHHHHHhh
Q 019882 132 IAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ 176 (334)
Q Consensus 132 lvh~pl~~hp~Pkr-----------------------------------vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~ 176 (334)
|+|+||+.||+|++ +||+|||..+.+++|||++++++||++||++
T Consensus 93 l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~ 172 (336)
T PLN02823 93 LVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK 172 (336)
T ss_pred HHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh
Confidence 99999999999999 6889998766668899999999999999987
Q ss_pred CCCCceeEEEECCCCCC--CCCcCCCCHHHHH-HHHHhcCCCcEEEEeccch--hhhhhHHHHHHHHHHHhcCCceeEEE
Q 019882 177 VPRGKYDAIIVDSSDPV--GPAQELVEKPFFD-TIAKALRPGGVLCNMAESM--WLHTHLIEDMISICRETFKGSVHYAW 251 (334)
Q Consensus 177 ~~~~~yDvIIvD~~dp~--gpa~~L~t~eFy~-~v~~~L~~gGilv~q~~sp--~~~~~~~~~i~~tl~~vF~~~v~~~~ 251 (334)
. +++||+||+|++||. +++.+|||+|||+ .|+++|+|||++++|++++ +.+.+.++.++++++++|+ .|..|.
T Consensus 173 ~-~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~-~v~~y~ 250 (336)
T PLN02823 173 R-DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFK-YVVPYT 250 (336)
T ss_pred C-CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCC-CEEEEE
Confidence 6 478999999999996 5678999999999 9999999999999999874 4467789999999999999 788889
Q ss_pred EEeeecCCCcEEEEEeecCCCCCCCCCCCCchhhccccc-cCCCCCceeCHHHHHHHhcCcHHHHHHhhcCCC
Q 019882 252 ASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGAD-KHKRELRFYNSEIHSAAFALPAFLKREVSVLGD 323 (334)
Q Consensus 252 ~~vPsyp~g~w~f~laSk~~~~~~~~~p~~~~~~~~~~~-~~~~~lryYn~~ih~aaF~LP~~~~~~l~~~~~ 323 (334)
+.||+|++ .|+|++||+.. +.++. | ..+. ++.. ....++||||+++|+|+|+||+++++.|.....
T Consensus 251 ~~vPsf~~-~w~f~~aS~~~-~~~~~-~-~~~~--~~~~~~~~~~lryy~~~~h~a~F~lP~~~~~~l~~~~~ 317 (336)
T PLN02823 251 AHVPSFAD-TWGWVMASDHP-FADLS-A-EELD--SRIKERIDGELKYLDGETFSSAFALNKTVRQALANETH 317 (336)
T ss_pred eecCCCCC-ceEEEEEeCCc-cccCC-h-hHHH--HhhhhcccCCCeEECHHHHHHHccCcHHHHHhhcCCCC
Confidence 99999986 59999999963 22221 1 1121 1111 112468999999999999999999999875544
No 7
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=100.00 E-value=1.4e-49 Score=375.55 Aligned_cols=229 Identities=42% Similarity=0.742 Sum_probs=203.1
Q ss_pred CCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHHhhhhccccCCChhh----------
Q 019882 76 MWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT---------- 145 (334)
Q Consensus 76 ~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkr---------- 145 (334)
++||.+++++|+++|++++|+||+|+|++++++|++|+|||.+|++++||+.|||||+|++++.|++|++
T Consensus 6 ~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG~G~G~ 85 (270)
T TIGR00417 6 HDKNFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIGGGDGG 85 (270)
T ss_pred cCCCceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEcCCchH
Confidence 4588999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -------------------------hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCC
Q 019882 146 -------------------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELV 200 (334)
Q Consensus 146 -------------------------vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~ 200 (334)
.|+++||.++..+++||++++++||++||++. +++||+||+|.++|.+++..||
T Consensus 86 ~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDvIi~D~~~~~~~~~~l~ 164 (270)
T TIGR00417 86 VLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDVIIVDSTDPVGPAETLF 164 (270)
T ss_pred HHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccEEEEeCCCCCCcccchh
Confidence 46778877765678999999999999999886 4789999999999999988999
Q ss_pred CHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEEEEeec-CCCCCCCCCC
Q 019882 201 EKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICST-EGPHVDFVNP 279 (334)
Q Consensus 201 t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f~laSk-~~~~~~~~~p 279 (334)
+.+||+.++++|+|||++++|+++++.....++.+.++++++|+ .|.++.+.||+||+|.|+|++||+ ..+|....
T Consensus 165 ~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~-~v~~~~~~vp~~~~g~~~~~~as~~~~~~~~~~-- 241 (270)
T TIGR00417 165 TKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFP-ITEYYTANIPTYPSGLWTFTIGSKNKYDPLEVE-- 241 (270)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCC-CeEEEEEEcCccccchhEEEEEECCCCCCCCcc--
Confidence 99999999999999999999999999888899999999999999 788999999999999999999999 33333221
Q ss_pred CCchhhccccccCCCCCceeCHHHHHHHhcCcHH
Q 019882 280 INPIEKLEGADKHKRELRFYNSEIHSAAFALPAF 313 (334)
Q Consensus 280 ~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~ 313 (334)
.+.+.+ ....++||||+++|+++|+||+|
T Consensus 242 ~~~~~~-----~~~~~~~~y~~~~h~~~f~lp~~ 270 (270)
T TIGR00417 242 DRRISE-----FEDGKTKYYNPDIHKAAFVLPKW 270 (270)
T ss_pred hhhhhh-----cccCCCeEECHHHHHHhcCCCCC
Confidence 111111 11235899999999999999986
No 8
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=100.00 E-value=3.9e-49 Score=368.46 Aligned_cols=207 Identities=43% Similarity=0.739 Sum_probs=192.0
Q ss_pred cceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHHhh
Q 019882 54 GWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIA 133 (334)
Q Consensus 54 ~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEmlv 133 (334)
+||+|..+ ++||+.+++|+|+++|++++|+||+|+|++++.||++|+|||.+|++++||+.|||||+
T Consensus 1 ~w~~e~~~-------------~~~~~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~ 67 (246)
T PF01564_consen 1 MWFTEYYS-------------QFDPGLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLV 67 (246)
T ss_dssp TEEEEEET--------------TSTTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHH
T ss_pred CeEEEEec-------------cCCCCceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHh
Confidence 59999853 56899999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCChhh-----------------------------------hHHhhCcccccCCCCCCeEEEEchHHHHHhhCC
Q 019882 134 HLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP 178 (334)
Q Consensus 134 h~pl~~hp~Pkr-----------------------------------vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~ 178 (334)
|+|++.||+|++ +|++|||..+.+++|||++++++||+.||+++.
T Consensus 68 h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~ 147 (246)
T PF01564_consen 68 HPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ 147 (246)
T ss_dssp HHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS
T ss_pred hhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc
Confidence 999999999999 689999988777899999999999999999985
Q ss_pred CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeecC
Q 019882 179 RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYP 258 (334)
Q Consensus 179 ~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp 258 (334)
+++||+||+|++||.+++..|||+|||+.|+++|+|||++++|+++++.++..++.+.++++++|+ .|.++.+.||+|+
T Consensus 148 ~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~~~~vP~~~ 226 (246)
T PF01564_consen 148 EEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP-QVKPYTAYVPSYG 226 (246)
T ss_dssp ST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS-EEEEEEEECTTSC
T ss_pred CCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC-ceEEEEEEcCeec
Confidence 338999999999999998889999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCcEEEEEeecCCCCC
Q 019882 259 SGIIGFLICSTEGPHV 274 (334)
Q Consensus 259 ~g~w~f~laSk~~~~~ 274 (334)
++.|+|++||+..+.+
T Consensus 227 ~~~~~~~~~s~~~~~~ 242 (246)
T PF01564_consen 227 SGWWSFASASKDINLV 242 (246)
T ss_dssp SSEEEEEEEESSTTT-
T ss_pred ccceeEEEEeCCCCcc
Confidence 9999999999986433
No 9
>PRK03612 spermidine synthase; Provisional
Probab=100.00 E-value=3.2e-41 Score=345.01 Aligned_cols=220 Identities=24% Similarity=0.434 Sum_probs=191.6
Q ss_pred ceEEEeeccEEEEeeCCCceEEEEEeCC-ce--eEEEECCeEEeeccchhHHHHHhhhhccccCCChhh-----------
Q 019882 80 EAHSLKVKEILFKGKSEYQEVLVFESLA-YG--KVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT----------- 145 (334)
Q Consensus 80 ~~~~~~v~~vL~~~~S~yQ~I~V~et~~-~G--~~L~LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkr----------- 145 (334)
....+++++++++++|+||+|+|++++. +| +.|++||.+|+++.||+.|||+++|+|++.||+|++
T Consensus 232 ~~~~~~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL~IG~G~G~~ 311 (521)
T PRK03612 232 AEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVLVLGGGDGLA 311 (521)
T ss_pred HHhHhccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHH
Confidence 3455678899999999999999999877 46 899999999999999999999999999999999998
Q ss_pred ------------------------hHHh--hCccccc-CCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC-Cc
Q 019882 146 ------------------------VSKK--YFPELAV-GFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP-AQ 197 (334)
Q Consensus 146 ------------------------vak~--~fp~l~~-~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp-a~ 197 (334)
+||+ +|++++. .++|||++++++||++|+++. +++||+||+|.++|.++ ..
T Consensus 312 ~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~~~ 390 (521)
T PRK03612 312 LREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-AEKFDVIIVDLPDPSNPALG 390 (521)
T ss_pred HHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-CCCCCEEEEeCCCCCCcchh
Confidence 4566 5666653 478999999999999999876 46899999999999877 47
Q ss_pred CCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHh-cCCceeEEEEEeeecCCCcEEEEEeecCCCCCCC
Q 019882 198 ELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET-FKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDF 276 (334)
Q Consensus 198 ~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~v-F~~~v~~~~~~vPsyp~g~w~f~laSk~~~~~~~ 276 (334)
+|||+|||+.++++|+|||++++|+++|+.+.+.++.+.++++++ | .+..|.+.||+| |.|||++|||..+|.+.
T Consensus 391 ~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf--~v~~~~~~vps~--g~w~f~~as~~~~~~~~ 466 (521)
T PRK03612 391 KLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL--ATTPYHVNVPSF--GEWGFVLAGAGARPPLA 466 (521)
T ss_pred ccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC--EEEEEEeCCCCc--chhHHHeeeCCCCcccc
Confidence 899999999999999999999999999998888999999999999 7 467788999999 79999999997543321
Q ss_pred CCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHH
Q 019882 277 VNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLK 315 (334)
Q Consensus 277 ~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~ 315 (334)
. . + ....++||||+++|+++|+||+|++
T Consensus 467 ~-----~---~---~~~~~~~~y~~~~h~~~f~lp~~~~ 494 (521)
T PRK03612 467 V-----P---T---ELPVPLRFLDPALLAAAFVFPKDMR 494 (521)
T ss_pred c-----c---h---hcccCCcccCHHHHHHHhCCChhhh
Confidence 1 0 1 1234799999999999999999999
No 10
>PRK01581 speE spermidine synthase; Validated
Probab=100.00 E-value=1.8e-40 Score=323.12 Aligned_cols=185 Identities=26% Similarity=0.347 Sum_probs=165.8
Q ss_pred eccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHHhhhhccccCCChhh--------------------
Q 019882 86 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT-------------------- 145 (334)
Q Consensus 86 v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkr-------------------- 145 (334)
+.++|++++|+||+|+|++++.| .|+|||.+|+|++||++|||||+|+||+.|++|++
T Consensus 96 ~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~ 173 (374)
T PRK01581 96 EHTNLFAEKSNYQNINLLQVSDI--RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYET 173 (374)
T ss_pred ccCEEEecCCCCceEEEEEcCCE--EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCC
Confidence 55899999999999999999976 69999999999999999999999999999999999
Q ss_pred ---------------hHHh--hCccccc-CCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC-CcCCCCHHHHH
Q 019882 146 ---------------VSKK--YFPELAV-GFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP-AQELVEKPFFD 206 (334)
Q Consensus 146 ---------------vak~--~fp~l~~-~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp-a~~L~t~eFy~ 206 (334)
+|++ +++.++. +++|||++++++||++||++. +++||+||+|++||.+. +..|||.|||+
T Consensus 174 v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-~~~YDVIIvDl~DP~~~~~~~LyT~EFy~ 252 (374)
T PRK01581 174 VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-SSLYDVIIIDFPDPATELLSTLYTSELFA 252 (374)
T ss_pred CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-CCCccEEEEcCCCccccchhhhhHHHHHH
Confidence 5676 3455553 578999999999999999886 46899999999999864 78999999999
Q ss_pred HHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEEEEeecCCCCCC
Q 019882 207 TIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVD 275 (334)
Q Consensus 207 ~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f~laSk~~~~~~ 275 (334)
.|+++|+|||++++|+++|+.++..++.+.++++++|. .+..|.+.||+|++ .|||++||+....++
T Consensus 253 ~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~-~v~~y~t~vPsyg~-~WgF~~as~~~~~~~ 319 (374)
T PRK01581 253 RIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGL-TVKSYHTIVPSFGT-DWGFHIAANSAYVLD 319 (374)
T ss_pred HHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCC-ceEEEEEecCCCCC-ceEEEEEeCCccccc
Confidence 99999999999999999999888888999999999999 78888999999964 599999999643333
No 11
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=298.41 Aligned_cols=210 Identities=27% Similarity=0.430 Sum_probs=180.4
Q ss_pred ccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHHhhhhccccCCChhh----------hHHhh------
Q 019882 87 KEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT----------VSKKY------ 150 (334)
Q Consensus 87 ~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkr----------vak~~------ 150 (334)
+++||..+|+||+|.|++..+ ...|+|||.+|++.+||+.|||.++||++.+.+..++ .+|+.
T Consensus 235 deIIh~~qspYQ~iVvTr~g~-d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~ 313 (508)
T COG4262 235 DEIIHAIQSPYQRIVVTRRGD-DLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQV 313 (508)
T ss_pred CceeeeccCccceEEEEEecC-ceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCc
Confidence 469999999999999999875 5899999999999999999999999999998887777 22321
Q ss_pred --------Cc-------------ccc-cCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC-CcCCCCHHHHHH
Q 019882 151 --------FP-------------ELA-VGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP-AQELVEKPFFDT 207 (334)
Q Consensus 151 --------fp-------------~l~-~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp-a~~L~t~eFy~~ 207 (334)
.| .++ ++|+||||+|+++||+.||+... +.||+||+|..||..| ..+|||.|||..
T Consensus 314 ~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~-~~fD~vIVDl~DP~tps~~rlYS~eFY~l 392 (508)
T COG4262 314 EQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA-DMFDVVIVDLPDPSTPSIGRLYSVEFYRL 392 (508)
T ss_pred ceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc-ccccEEEEeCCCCCCcchhhhhhHHHHHH
Confidence 12 222 35899999999999999999985 6899999999999998 679999999999
Q ss_pred HHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEEEEeecCCCCCCCCCCCCchhhcc
Q 019882 208 IAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLE 287 (334)
Q Consensus 208 v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f~laSk~~~~~~~~~p~~~~~~~~ 287 (334)
++++|+|+|++|+|++||+..++.++++.+|++++-- .+-.|..+|||| |.|||++|++. +.++..|.
T Consensus 393 l~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~-~~~Pyhv~VPTF--GeWGf~l~~~~--~~~fep~~------- 460 (508)
T COG4262 393 LSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGY-RVWPYHVHVPTF--GEWGFILAAPG--DADFEPPT------- 460 (508)
T ss_pred HHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcc-eeeeeEEecCcc--cccceeecccc--cCCCCCCc-------
Confidence 9999999999999999999999999999999999854 566778999999 89999999987 45553221
Q ss_pred ccccCCCCCceeCHHHHHHHhcCcHH
Q 019882 288 GADKHKRELRFYNSEIHSAAFALPAF 313 (334)
Q Consensus 288 ~~~~~~~~lryYn~~ih~aaF~LP~~ 313 (334)
....+++|.|.|+..|+|++-+.
T Consensus 461 ---e~~~~t~FLd~e~~~a~~~fg~d 483 (508)
T COG4262 461 ---EYRPPTRFLDAEVLHAAFVFGPD 483 (508)
T ss_pred ---ccCcccchhhHHHHHHHHhcCCC
Confidence 12357999999999999997654
No 12
>PRK04457 spermidine synthase; Provisional
Probab=99.75 E-value=5.7e-17 Score=153.00 Aligned_cols=164 Identities=24% Similarity=0.325 Sum_probs=123.5
Q ss_pred eeCCCceEEEEEeCCceeEEEECC-eEEeecc------chhHHHHHhhhhccccCCChhh--------------------
Q 019882 93 GKSEYQEVLVFESLAYGKVLVLDG-IVQLTEK------DECAYQEMIAHLPLCSIPSPKT-------------------- 145 (334)
Q Consensus 93 ~~S~yQ~I~V~et~~~G~~L~LDG-~iQ~te~------DEf~YhEmlvh~pl~~hp~Pkr-------------------- 145 (334)
.++.|+.|.|+|... .|.|.+|+ .+|+... ..+.|+++|.. .+..+++|++
T Consensus 12 ~~~~~~~i~v~e~~~-~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~-~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p 89 (262)
T PRK04457 12 AKAGFPEVGVSEEGG-VRSLHLGSDTVQSSMRIDDPSELELAYTRAMMG-FLLFNPRPQHILQIGLGGGSLAKFIYTYLP 89 (262)
T ss_pred ccccCCCcEEEecCC-EEEEEECCCcceeeeecCCcccccCHHHHHHHH-HHhcCCCCCEEEEECCCHhHHHHHHHHhCC
Confidence 467899999999984 69999998 5887632 34789997753 4455677887
Q ss_pred ---------------hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHH
Q 019882 146 ---------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK 210 (334)
Q Consensus 146 ---------------vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~ 210 (334)
+|+++|.. ...++|++++++||++|+++.+ ++||+||+|++++.+++..|+|.+||+.|++
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~---~~~~~rv~v~~~Da~~~l~~~~-~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~ 165 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFEL---PENGERFEVIEADGAEYIAVHR-HSTDVILVDGFDGEGIIDALCTQPFFDDCRN 165 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCC---CCCCCceEEEECCHHHHHHhCC-CCCCEEEEeCCCCCCCccccCcHHHHHHHHH
Confidence 23444421 1136899999999999998764 6899999999988788889999999999999
Q ss_pred hcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEEEEeecC
Q 019882 211 ALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTE 270 (334)
Q Consensus 211 ~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f~laSk~ 270 (334)
+|+|||+++++. |.....+..++++++++|+..+ + .+|+..+|+ ..++|++.
T Consensus 166 ~L~pgGvlvin~---~~~~~~~~~~l~~l~~~F~~~~--~--~~~~~~~~N-~v~~a~~~ 217 (262)
T PRK04457 166 ALSSDGIFVVNL---WSRDKRYDRYLERLESSFEGRV--L--ELPAESHGN-VAVFAFKS 217 (262)
T ss_pred hcCCCcEEEEEc---CCCchhHHHHHHHHHHhcCCcE--E--EEecCCCcc-EEEEEECC
Confidence 999999999853 2233456788899999998432 2 245555554 34667774
No 13
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.14 E-value=7.5e-10 Score=102.34 Aligned_cols=138 Identities=20% Similarity=0.345 Sum_probs=103.9
Q ss_pred eeEEEECCeEEeeccchhHHHHHhhhhccccCCChhh---------------hHH--------hhCcc---------ccc
Q 019882 109 GKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT---------------VSK--------KYFPE---------LAV 156 (334)
Q Consensus 109 G~~L~LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkr---------------vak--------~~fp~---------l~~ 156 (334)
--.+.|||+-|.-....-.+...++-+.+.--.+.++ +.+ +-.|. ++.
T Consensus 101 ~PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr 180 (287)
T COG2521 101 APTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSR 180 (287)
T ss_pred CCeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCc
Confidence 3689999999987777777777777776653223333 000 11121 234
Q ss_pred CCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccch---hhhhhHHH
Q 019882 157 GFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM---WLHTHLIE 233 (334)
Q Consensus 157 ~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp---~~~~~~~~ 233 (334)
.+.+++++|+.+|+.+++++..+++||+||.|.+. .+.+.+|||.+||+.+.|.|++||-+.-..++| +...+..+
T Consensus 181 ~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPR-fS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~ 259 (287)
T COG2521 181 ELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPR-FSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPK 259 (287)
T ss_pred cccccccEEecccHHHHHhcCCccccceEeeCCCc-cchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhH
Confidence 45577999999999999999988899999999864 345679999999999999999999998766666 34567889
Q ss_pred HHHHHHHHh-cCCcee
Q 019882 234 DMISICRET-FKGSVH 248 (334)
Q Consensus 234 ~i~~tl~~v-F~~~v~ 248 (334)
.+.+.|+++ |. .|.
T Consensus 260 gVa~RLr~vGF~-~v~ 274 (287)
T COG2521 260 GVAERLRRVGFE-VVK 274 (287)
T ss_pred HHHHHHHhcCce-eee
Confidence 999999987 66 443
No 14
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=98.30 E-value=2.5e-06 Score=72.20 Aligned_cols=93 Identities=24% Similarity=0.402 Sum_probs=63.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 240 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~ 240 (334)
=+++++++|+++.|++.. ..+|+|+.|.+.|..- ..|.|.|+|+.+++++++||++++.+.. ..+.+.|.
T Consensus 31 v~L~L~~gDa~~~l~~l~-~~~Da~ylDgFsP~~n-PelWs~e~~~~l~~~~~~~~~l~Tys~a--------~~Vr~~L~ 100 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLD-ARFDAWYLDGFSPAKN-PELWSEELFKKLARLSKPGGTLATYSSA--------GAVRRALQ 100 (124)
T ss_dssp EEEEEEES-HHHHHHHB--T-EEEEEE-SS-TTTS-GGGSSHHHHHHHHHHEEEEEEEEES--B--------HHHHHHHH
T ss_pred EEEEEEEcHHHHHHHhCc-ccCCEEEecCCCCcCC-cccCCHHHHHHHHHHhCCCcEEEEeech--------HHHHHHHH
Confidence 367789999999999974 7899999999988654 3599999999999999999999986533 22445555
Q ss_pred HhcCCceeEEEEEeeecCCCcEEEEEeec
Q 019882 241 ETFKGSVHYAWASVPTYPSGIIGFLICST 269 (334)
Q Consensus 241 ~vF~~~v~~~~~~vPsyp~g~w~f~laSk 269 (334)
++ .+....+|-|+ +-...+.|+|
T Consensus 101 ~a-----GF~v~~~~g~g-~Kr~~~~a~~ 123 (124)
T PF05430_consen 101 QA-----GFEVEKVPGFG-RKREMLRAVK 123 (124)
T ss_dssp HC-----TEEEEEEE-ST-TSSEEEEEEC
T ss_pred Hc-----CCEEEEcCCCC-CcchheEEEc
Confidence 43 22334678774 3445666665
No 15
>PLN02476 O-methyltransferase
Probab=98.20 E-value=1.6e-05 Score=76.03 Aligned_cols=80 Identities=26% Similarity=0.488 Sum_probs=63.3
Q ss_pred CCeEEeeccchhHHHHHhhhhccccCCChhhhHHhhCcccccCCCCCCeEEEEchHHHHHhhC----CCCceeEEEECCC
Q 019882 115 DGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV----PRGKYDAIIVDSS 190 (334)
Q Consensus 115 DG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkrvak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~----~~~~yDvIIvD~~ 190 (334)
||.+-+.|.++..+. +|+++|... +++ ++++++.+|+.++|++. ..++||+|++|+.
T Consensus 143 ~G~V~TiE~d~e~~~----------------~Ar~n~~~a--Gl~-~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 143 SGCLVACERDSNSLE----------------VAKRYYELA--GVS-HKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCEEEEEECCHHHHH----------------HHHHHHHHc--CCC-CcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 788888888885543 478888653 343 69999999999999753 1257999999998
Q ss_pred CCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 191 DPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 191 dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.+.+ .++|+.+.+.|++||+++.
T Consensus 204 K~~Y-------~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 204 KRMY-------QDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred HHHH-------HHHHHHHHHhcCCCcEEEE
Confidence 6554 4699999999999999986
No 16
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.13 E-value=7.1e-06 Score=75.89 Aligned_cols=81 Identities=28% Similarity=0.588 Sum_probs=66.0
Q ss_pred ECCeEEeeccchhHHHHHhhhhccccCCChhhhHHhhCcccccCCCCCCeEEEE-chHHHHHhhCCCCceeEEEECCCCC
Q 019882 114 LDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKYDAIIVDSSDP 192 (334)
Q Consensus 114 LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkrvak~~fp~l~~~~~dpRv~viv-~Dg~~fL~~~~~~~yDvIIvD~~dp 192 (334)
=||.+-++|+++-.+. .|+++|.+. +. ++++.++. +|+.+.|.+...+.||+|++|+..+
T Consensus 83 ~~g~l~tiE~~~e~~~----------------~A~~n~~~a--g~-~~~i~~~~~gdal~~l~~~~~~~fDliFIDadK~ 143 (219)
T COG4122 83 DDGRLTTIERDEERAE----------------IARENLAEA--GV-DDRIELLLGGDALDVLSRLLDGSFDLVFIDADKA 143 (219)
T ss_pred CCCeEEEEeCCHHHHH----------------HHHHHHHHc--CC-cceEEEEecCcHHHHHHhccCCCccEEEEeCChh
Confidence 3788999999984433 478888654 33 56799999 6999999873357899999999877
Q ss_pred CCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 193 VGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 193 ~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.+| +||+.+.+.|+|||+++.
T Consensus 144 ~yp-------~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 144 DYP-------EYLERALPLLRPGGLIVA 164 (219)
T ss_pred hCH-------HHHHHHHHHhCCCcEEEE
Confidence 775 599999999999999996
No 17
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.13 E-value=4.9e-06 Score=76.16 Aligned_cols=80 Identities=29% Similarity=0.560 Sum_probs=62.5
Q ss_pred CCeEEeeccchhHHHHHhhhhccccCCChhhhHHhhCcccccCCCCCCeEEEEchHHHHHhhCC----CCceeEEEECCC
Q 019882 115 DGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP----RGKYDAIIVDSS 190 (334)
Q Consensus 115 DG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkrvak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~----~~~yDvIIvD~~ 190 (334)
||.+-+.|.++..+. +|+++|... ++ +.|++++.+||.++|.+.. .++||+|++|+.
T Consensus 70 ~g~i~tiE~~~~~~~----------------~A~~~~~~a--g~-~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAE----------------IARENFRKA--GL-DDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHH----------------HHHHHHHHT--TG-GGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHH----------------HHHHHHHhc--CC-CCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 788999998885544 578887643 34 4699999999999987631 247999999997
Q ss_pred CCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 191 DPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 191 dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...+ .+||+.+.+.|++||++++
T Consensus 131 K~~y-------~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 131 KRNY-------LEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp GGGH-------HHHHHHHHHHEEEEEEEEE
T ss_pred ccch-------hhHHHHHhhhccCCeEEEE
Confidence 5544 3699999999999999997
No 18
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.96 E-value=7.2e-05 Score=70.43 Aligned_cols=81 Identities=20% Similarity=0.355 Sum_probs=63.7
Q ss_pred ECCeEEeeccchhHHHHHhhhhccccCCChhhhHHhhCcccccCCCCCCeEEEEchHHHHHhhCC-----CCceeEEEEC
Q 019882 114 LDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP-----RGKYDAIIVD 188 (334)
Q Consensus 114 LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkrvak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~-----~~~yDvIIvD 188 (334)
-||.+-+.|.++..+. +|+++|... ++ ..+++++.+|+.+.|.+.. .++||+|++|
T Consensus 103 ~~g~v~tiE~~~~~~~----------------~Ar~~~~~a--g~-~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiD 163 (247)
T PLN02589 103 EDGKILAMDINRENYE----------------LGLPVIQKA--GV-AHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVD 163 (247)
T ss_pred CCCEEEEEeCCHHHHH----------------HHHHHHHHC--CC-CCceEEEeccHHHHHHHHHhccccCCcccEEEec
Confidence 3788999998874433 478887543 34 3799999999999998741 2589999999
Q ss_pred CCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 189 SSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 189 ~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+....+ .++|+.+.+.|++||+++.
T Consensus 164 adK~~Y-------~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 164 ADKDNY-------INYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred CCHHHh-------HHHHHHHHHhcCCCeEEEE
Confidence 975444 4699999999999999986
No 19
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.90 E-value=0.00014 Score=67.70 Aligned_cols=81 Identities=25% Similarity=0.485 Sum_probs=62.7
Q ss_pred ECCeEEeeccchhHHHHHhhhhccccCCChhhhHHhhCcccccCCCCCCeEEEEchHHHHHhhC----CCCceeEEEECC
Q 019882 114 LDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV----PRGKYDAIIVDS 189 (334)
Q Consensus 114 LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkrvak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~----~~~~yDvIIvD~ 189 (334)
-+|.+-+.|.++..+. +|++++... +++ .+++++.+|+.+.|.+. ..++||+|++|+
T Consensus 92 ~~g~v~tiD~d~~~~~----------------~A~~n~~~~--gl~-~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa 152 (234)
T PLN02781 92 EDGRITAIDIDKEAYE----------------VGLEFIKKA--GVD-HKINFIQSDALSALDQLLNNDPKPEFDFAFVDA 152 (234)
T ss_pred CCCEEEEEECCHHHHH----------------HHHHHHHHc--CCC-CcEEEEEccHHHHHHHHHhCCCCCCCCEEEECC
Confidence 3788888898885544 477777543 343 69999999999998753 135799999999
Q ss_pred CCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 190 SDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 190 ~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
..+.++ ++|+.+.+.|+|||+++.
T Consensus 153 ~k~~y~-------~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 153 DKPNYV-------HFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CHHHHH-------HHHHHHHHhcCCCeEEEE
Confidence 765443 589999999999999985
No 20
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.49 E-value=0.0001 Score=74.79 Aligned_cols=84 Identities=20% Similarity=0.378 Sum_probs=66.7
Q ss_pred CCCeEEEEchHHHHHhhCC-----CCceeEEEECCC--CCCC---CCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhh
Q 019882 160 DPRVRLHIGDAVEFLRQVP-----RGKYDAIIVDSS--DPVG---PAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHT 229 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~-----~~~yDvIIvD~~--dp~g---pa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~ 229 (334)
+.|.+|++.||..|+++.. +..||||++|.. |+.| |+....+++|.+.++..|.|.|+++.+.-.. +.
T Consensus 344 ~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r--~~ 421 (482)
T KOG2352|consen 344 SDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR--NS 421 (482)
T ss_pred hhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC--Cc
Confidence 4499999999999998753 357999998764 4333 5778899999999999999999999865322 23
Q ss_pred hHHHHHHHHHHHhcCC
Q 019882 230 HLIEDMISICRETFKG 245 (334)
Q Consensus 230 ~~~~~i~~tl~~vF~~ 245 (334)
.....+...++.+|+.
T Consensus 422 ~~~~~~~~~l~~vf~~ 437 (482)
T KOG2352|consen 422 SFKDEVLMNLAKVFPQ 437 (482)
T ss_pred chhHHHHHhhhhhhHH
Confidence 4567888999999993
No 21
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.39 E-value=0.00034 Score=56.68 Aligned_cols=74 Identities=28% Similarity=0.561 Sum_probs=51.8
Q ss_pred hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC----CcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 146 VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP----AQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 146 vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp----a~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++++.++... + +.|++++.+|..++.+...+++||+||.|.+-.... ...-...+|++.+.+.|+|||+++..
T Consensus 38 ~a~~~~~~~~--~-~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 38 LARRNLPRNG--L-DDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp HHHHHCHHCT--T-TTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHcc--C-CceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 4666665432 2 568999999999998666567899999998643211 12224579999999999999999864
Q ss_pred c
Q 019882 222 A 222 (334)
Q Consensus 222 ~ 222 (334)
.
T Consensus 115 ~ 115 (117)
T PF13659_consen 115 T 115 (117)
T ss_dssp E
T ss_pred e
Confidence 3
No 22
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.36 E-value=0.00047 Score=69.00 Aligned_cols=78 Identities=26% Similarity=0.480 Sum_probs=53.2
Q ss_pred CCCCCCeEEEEchHHHHHhhCC--CCceeEEEECCCCC-CCCCcCCC--CHHHH---HHHHHhcCCCcEEEEeccchhhh
Q 019882 157 GFEDPRVRLHIGDAVEFLRQVP--RGKYDAIIVDSSDP-VGPAQELV--EKPFF---DTIAKALRPGGVLCNMAESMWLH 228 (334)
Q Consensus 157 ~~~dpRv~viv~Dg~~fL~~~~--~~~yDvIIvD~~dp-~gpa~~L~--t~eFy---~~v~~~L~~gGilv~q~~sp~~~ 228 (334)
+++..+.+++.+|+++||+... +++|||||+|.+.= .++ ..++ .+.|. ..+.++|+|||++++-+.+....
T Consensus 264 g~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k-~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 264 GLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSK-KQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred CCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCc-ccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 5667899999999999998763 34899999998752 222 2222 23333 45678999999999765555444
Q ss_pred hhHHHHH
Q 019882 229 THLIEDM 235 (334)
Q Consensus 229 ~~~~~~i 235 (334)
.+.+..+
T Consensus 343 ~~~f~~~ 349 (393)
T COG1092 343 SDLFLEI 349 (393)
T ss_pred HHHHHHH
Confidence 4443333
No 23
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0021 Score=60.64 Aligned_cols=95 Identities=29% Similarity=0.490 Sum_probs=69.2
Q ss_pred CCeEEeeccchhHHHHHhhhhccccCCChhhhHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCC
Q 019882 115 DGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVG 194 (334)
Q Consensus 115 DG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkrvak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~g 194 (334)
.|.+-+-|.++-.|. .|++-|..+ ++.| ++++..+|..+.... +.||+|++|.+||+
T Consensus 119 ~G~v~tyE~r~d~~k----------------~A~~Nl~~~--~l~d-~v~~~~~Dv~~~~~~---~~vDav~LDmp~PW- 175 (256)
T COG2519 119 EGHVTTYEIREDFAK----------------TARENLSEF--GLGD-RVTLKLGDVREGIDE---EDVDAVFLDLPDPW- 175 (256)
T ss_pred CceEEEEEecHHHHH----------------HHHHHHHHh--cccc-ceEEEeccccccccc---cccCEEEEcCCChH-
Confidence 366777777664443 466655544 4544 499999999998864 37999999999996
Q ss_pred CCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHh-cC
Q 019882 195 PAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET-FK 244 (334)
Q Consensus 195 pa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~v-F~ 244 (334)
++.+.++++|+|||.+++-+ |.. +.++..+..|++. |-
T Consensus 176 --------~~le~~~~~Lkpgg~~~~y~--P~v--eQv~kt~~~l~~~g~~ 214 (256)
T COG2519 176 --------NVLEHVSDALKPGGVVVVYS--PTV--EQVEKTVEALRERGFV 214 (256)
T ss_pred --------HHHHHHHHHhCCCcEEEEEc--CCH--HHHHHHHHHHHhcCcc
Confidence 48899999999999999854 443 2456666777765 44
No 24
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.97 E-value=0.005 Score=55.31 Aligned_cols=77 Identities=26% Similarity=0.474 Sum_probs=57.6
Q ss_pred CCeEEEEchHHHHHhhC-CCCceeEEEECCCCCCCCC----cCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQV-PRGKYDAIIVDSSDPVGPA----QELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 235 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~-~~~~yDvIIvD~~dp~gpa----~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i 235 (334)
++++++.+|+.+++... +++.+|.|+++.+||+... ..+...+|++.+++.|+|||.+...+.+..+ +..+
T Consensus 66 ~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~----~~~~ 141 (194)
T TIGR00091 66 KNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPL----FEDM 141 (194)
T ss_pred CCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHH----HHHH
Confidence 48999999999887543 2358999999999987432 3477789999999999999999987655432 3344
Q ss_pred HHHHHH
Q 019882 236 ISICRE 241 (334)
Q Consensus 236 ~~tl~~ 241 (334)
...+.+
T Consensus 142 ~~~~~~ 147 (194)
T TIGR00091 142 LKVLSE 147 (194)
T ss_pred HHHHHh
Confidence 444444
No 25
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.87 E-value=0.0019 Score=62.21 Aligned_cols=83 Identities=25% Similarity=0.498 Sum_probs=48.9
Q ss_pred CCCCCCeEEEEchHHHHHhhC-CCCceeEEEECCCCCCCCCcCCCCHHH---HHHHHHhcCCCcEEEEeccchhhhhhHH
Q 019882 157 GFEDPRVRLHIGDAVEFLRQV-PRGKYDAIIVDSSDPVGPAQELVEKPF---FDTIAKALRPGGVLCNMAESMWLHTHLI 232 (334)
Q Consensus 157 ~~~dpRv~viv~Dg~~fL~~~-~~~~yDvIIvD~~dp~gpa~~L~t~eF---y~~v~~~L~~gGilv~q~~sp~~~~~~~ 232 (334)
+++..+++++.+|+++||++. ..++||+||+|.+.=.--...+ .+.| ...+.+.|+|||++++-+.|+....+.+
T Consensus 170 g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~-~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l 248 (286)
T PF10672_consen 170 GLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDL-ERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFL 248 (286)
T ss_dssp T-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEH-HHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHH
T ss_pred CCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHH-HHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHH
Confidence 455679999999999999753 2368999999987411111111 3443 4456688999999987666776665555
Q ss_pred HHHHHHHH
Q 019882 233 EDMISICR 240 (334)
Q Consensus 233 ~~i~~tl~ 240 (334)
..+++...
T Consensus 249 ~~~~~~~a 256 (286)
T PF10672_consen 249 LEAVAEAA 256 (286)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 55444433
No 26
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.80 E-value=0.0042 Score=62.37 Aligned_cols=79 Identities=23% Similarity=0.376 Sum_probs=52.0
Q ss_pred CCCCCeEEEEchHHHHHhhC--CCCceeEEEECCCCCCCCCcCCCC-----HHHHHHHHHhcCCCcEEEEeccchhhhhh
Q 019882 158 FEDPRVRLHIGDAVEFLRQV--PRGKYDAIIVDSSDPVGPAQELVE-----KPFFDTIAKALRPGGVLCNMAESMWLHTH 230 (334)
Q Consensus 158 ~~dpRv~viv~Dg~~fL~~~--~~~~yDvIIvD~~dp~gpa~~L~t-----~eFy~~v~~~L~~gGilv~q~~sp~~~~~ 230 (334)
++..+++++.+|+++++++. .+++||+||+|.+-=......+++ .++.+.+.+.|+|||++++-+.|.....+
T Consensus 268 l~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~ 347 (396)
T PRK15128 268 LDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSD 347 (396)
T ss_pred CCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHH
Confidence 43358999999999999753 235799999998631111112221 24455678999999999976666665544
Q ss_pred HHHHHH
Q 019882 231 LIEDMI 236 (334)
Q Consensus 231 ~~~~i~ 236 (334)
.+..++
T Consensus 348 ~f~~~v 353 (396)
T PRK15128 348 LFQKII 353 (396)
T ss_pred HHHHHH
Confidence 444443
No 27
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.58 E-value=0.0054 Score=65.12 Aligned_cols=63 Identities=30% Similarity=0.553 Sum_probs=53.0
Q ss_pred CCCC--CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 158 FEDP--RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 158 ~~dp--Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
|++. +++++++|+++.|++.. .++|+|+.|.+.|.-- ..|.|.+||+.++++++|||++++.+
T Consensus 142 ~~~~~~~l~l~~gd~~~~~~~~~-~~~d~~~lD~FsP~~n-p~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 142 FDDGRVTLDLWFGDANELLPQLD-ARADAWFLDGFAPAKN-PDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred ecCCcEEEEEEecCHHHHHHhcc-ccccEEEeCCCCCccC-hhhccHHHHHHHHHHhCCCCEEEEee
Confidence 4444 55588999999999874 5799999999988643 46899999999999999999999865
No 28
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.50 E-value=0.013 Score=54.67 Aligned_cols=85 Identities=26% Similarity=0.375 Sum_probs=62.1
Q ss_pred eEEEECCeEEeeccchhHHHHHhhhhccccCCChhhhHHhhCcccccCCCCCCeEEEEchHHHHHhhC----CCCceeEE
Q 019882 110 KVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV----PRGKYDAI 185 (334)
Q Consensus 110 ~~L~LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkrvak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~----~~~~yDvI 185 (334)
..|-=||.+-+.|.|...|.- ..++ +..+--+.+++++.++|.+-|.+. ..++||++
T Consensus 93 lalp~dGrv~a~eid~~~~~~----------------~~~~---~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 93 LALPEDGRVVAIEIDADAYEI----------------GLEL---VKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred HhcCCCceEEEEecChHHHHH----------------hHHH---HHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 344457999999998866631 1111 112223679999999999877653 24689999
Q ss_pred EECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 186 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 186 IvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
++|+....+ . .+|+.+-+.|++|||++.
T Consensus 154 FvDadK~nY------~-~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 154 FVDADKDNY------S-NYYERLLRLLRVGGVIVV 181 (237)
T ss_pred EEccchHHH------H-HHHHHHHhhcccccEEEE
Confidence 999986544 3 799999999999999985
No 29
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.45 E-value=0.0017 Score=51.96 Aligned_cols=60 Identities=23% Similarity=0.307 Sum_probs=43.0
Q ss_pred CCCCeEEEEchHHHHHhhCCCCceeEEEECC-CCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 159 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDS-SDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~-~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
..+|++++.+|+ .+.... .++||+|+.+. .-...... --.+++++.++++|+|||+++..
T Consensus 50 ~~~~i~~~~~d~-~~~~~~-~~~~D~v~~~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 50 LSDRITFVQGDA-EFDPDF-LEPFDLVICSGFTLHFLLPL-DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp TTTTEEEEESCC-HGGTTT-SSCEEEEEECSGSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCeEEEECcc-ccCccc-CCCCCEEEECCCccccccch-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 368999999999 555554 46799999988 21111110 11246899999999999999974
No 30
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.36 E-value=0.023 Score=51.41 Aligned_cols=77 Identities=31% Similarity=0.484 Sum_probs=53.9
Q ss_pred CCeEEEEchHHHHHhh-CCCCceeEEEECCCCCCCCC----cCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQ-VPRGKYDAIIVDSSDPVGPA----QELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 235 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~-~~~~~yDvIIvD~~dp~gpa----~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i 235 (334)
++++++.+|+.+.+.. .++++||+|++...+|.... ..+....|++.+.+.|+|||+++..+.+. ..+..+
T Consensus 90 ~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~----~~~~~~ 165 (202)
T PRK00121 90 TNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE----GYAEYM 165 (202)
T ss_pred CCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH----HHHHHH
Confidence 6799999999555542 33468999999877765321 22346889999999999999999765432 234455
Q ss_pred HHHHHH
Q 019882 236 ISICRE 241 (334)
Q Consensus 236 ~~tl~~ 241 (334)
.+.+++
T Consensus 166 ~~~~~~ 171 (202)
T PRK00121 166 LEVLSA 171 (202)
T ss_pred HHHHHh
Confidence 555554
No 31
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.35 E-value=0.015 Score=58.34 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=55.9
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC--CcCCCCHHHHHHHHHhcCCCcEEEEeccchhh
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP--AQELVEKPFFDTIAKALRPGGVLCNMAESMWL 227 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp--a~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~ 227 (334)
++++++.+||..++...+++++|.|++=.+||+.- -.+|.+.+|++.+++.|+|||.+...+.+..+
T Consensus 172 ~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y 240 (390)
T PRK14121 172 KNLLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELY 240 (390)
T ss_pred CcEEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHH
Confidence 46999999999887666667899999998888732 24688899999999999999999988776543
No 32
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.30 E-value=0.021 Score=53.92 Aligned_cols=105 Identities=26% Similarity=0.439 Sum_probs=69.1
Q ss_pred EEECCeEEeeccchhHHHHHhhhhccccCCChhhhHHhhCcccccCCCCCCeEEEEchHHH--HHhhCCCCceeEEEECC
Q 019882 112 LVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGFEDPRVRLHIGDAVE--FLRQVPRGKYDAIIVDS 189 (334)
Q Consensus 112 L~LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkrvak~~fp~l~~~~~dpRv~viv~Dg~~--fL~~~~~~~yDvIIvD~ 189 (334)
+--+|.+-+-|..+-.+. .|++-|... ++ +.++++++.|..+ |-... +..+|.||+|.
T Consensus 62 v~p~G~v~t~E~~~~~~~----------------~A~~n~~~~--gl-~~~v~~~~~Dv~~~g~~~~~-~~~~DavfLDl 121 (247)
T PF08704_consen 62 VGPTGHVYTYEFREDRAE----------------KARKNFERH--GL-DDNVTVHHRDVCEEGFDEEL-ESDFDAVFLDL 121 (247)
T ss_dssp HTTTSEEEEEESSHHHHH----------------HHHHHHHHT--TC-CTTEEEEES-GGCG--STT--TTSEEEEEEES
T ss_pred hCCCeEEEccccCHHHHH----------------HHHHHHHHc--CC-CCCceeEecceecccccccc-cCcccEEEEeC
Confidence 334678877777665544 356655443 33 4599999999753 42222 35799999999
Q ss_pred CCCCCCCcCCCCHHHHHHHHHhc-CCCcEEEEeccchhhhhhHHHHHHHHHHHh-cCCceeEE
Q 019882 190 SDPVGPAQELVEKPFFDTIAKAL-RPGGVLCNMAESMWLHTHLIEDMISICRET-FKGSVHYA 250 (334)
Q Consensus 190 ~dp~gpa~~L~t~eFy~~v~~~L-~~gGilv~q~~sp~~~~~~~~~i~~tl~~v-F~~~v~~~ 250 (334)
++|+. ....++++| ++||.+++.+ |.. +.+......|++. |. .+..+
T Consensus 122 p~Pw~---------~i~~~~~~L~~~gG~i~~fs--P~i--eQv~~~~~~L~~~gf~-~i~~~ 170 (247)
T PF08704_consen 122 PDPWE---------AIPHAKRALKKPGGRICCFS--PCI--EQVQKTVEALREHGFT-DIETV 170 (247)
T ss_dssp SSGGG---------GHHHHHHHE-EEEEEEEEEE--SSH--HHHHHHHHHHHHTTEE-EEEEE
T ss_pred CCHHH---------HHHHHHHHHhcCCceEEEEC--CCH--HHHHHHHHHHHHCCCe-eeEEE
Confidence 99975 567899999 8999999865 433 2456666777763 65 44443
No 33
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.20 E-value=0.0091 Score=54.14 Aligned_cols=78 Identities=32% Similarity=0.446 Sum_probs=57.5
Q ss_pred CCCeEEEEchHHHHHhhCC-CCceeEEEECCCCCCCC----CcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHH
Q 019882 160 DPRVRLHIGDAVEFLRQVP-RGKYDAIIVDSSDPVGP----AQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIED 234 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~-~~~yDvIIvD~~dp~gp----a~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~ 234 (334)
-+++.++.+||..+|...- +++.|-|.+=-+||+-- -.+|++.+|++.+.++|+|||.+-.++++..+ +..
T Consensus 66 l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y----~~~ 141 (195)
T PF02390_consen 66 LKNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEY----AEW 141 (195)
T ss_dssp TSSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHH----HHH
T ss_pred ccceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHH----HHH
Confidence 4799999999999887643 37899999999999742 36899999999999999999999988876543 445
Q ss_pred HHHHHHH
Q 019882 235 MISICRE 241 (334)
Q Consensus 235 i~~tl~~ 241 (334)
+++.+.+
T Consensus 142 ~~~~~~~ 148 (195)
T PF02390_consen 142 MLEQFEE 148 (195)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555555
No 34
>PRK11524 putative methyltransferase; Provisional
Probab=96.17 E-value=0.018 Score=55.04 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=48.1
Q ss_pred CCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCC-----CCcCC-------CCHHHHHHHHHhcCCCcEEEEecc
Q 019882 158 FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVG-----PAQEL-------VEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 158 ~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~g-----pa~~L-------~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
|+...-+|+.+|++++++..+++++|+||+|.+=..+ ..... +..+++..+.+.|+|||.++....
T Consensus 4 ~~~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 4 FGNEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred ccCCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 3456678999999999988777899999999752111 10000 114788999999999999997643
No 35
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=95.83 E-value=0.056 Score=50.39 Aligned_cols=67 Identities=31% Similarity=0.461 Sum_probs=58.3
Q ss_pred CCeEEEEchHHHHHhhCCCC-ceeEEEECCCCCCCC----CcCCCCHHHHHHHHHhcCCCcEEEEeccchhh
Q 019882 161 PRVRLHIGDAVEFLRQVPRG-KYDAIIVDSSDPVGP----AQELVEKPFFDTIAKALRPGGVLCNMAESMWL 227 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~-~yDvIIvD~~dp~gp----a~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~ 227 (334)
++++|+..||.+.|....++ +.|=|.+=-+||+-- =.+|.+.+|.+.+.+.|+|||.+-..++...+
T Consensus 98 ~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 98 KNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred CcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence 39999999999999887555 999999999999854 35799999999999999999999987766544
No 36
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.014 Score=55.18 Aligned_cols=61 Identities=28% Similarity=0.307 Sum_probs=54.2
Q ss_pred CCCeEEEEchHHHHHhhCCCC---ceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRG---KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~---~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.-.++++++|+++.+.... . ++|+.+.|.+.|.-.| .+.+.|++..++++..+||.+++-+
T Consensus 145 ~~~l~l~~gd~~~~~p~~~-~~~~~~dAwflDgFsP~kNP-~mW~~e~l~~~a~~~~~~~~l~t~s 208 (252)
T COG4121 145 LLLLGLVIGDAGDGIPPVP-RRRPGTDAWFLDGFRPVKNP-EMWEDELLNLMARIPYRDPTLATFA 208 (252)
T ss_pred hheeeeeeeehhhcCCccc-ccccCccEEecCCccccCCh-hhccHHHHHHHHhhcCCCCceechH
Confidence 4578899999999998874 4 6999999999998766 8899999999999999999999844
No 37
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.029 Score=51.67 Aligned_cols=77 Identities=27% Similarity=0.411 Sum_probs=55.3
Q ss_pred CCeEEeeccchhHHHHHhhhhccccCCChhhhHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCC
Q 019882 115 DGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVG 194 (334)
Q Consensus 115 DG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkrvak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~g 194 (334)
=|.+-+.|+++-... .||+-|..+ ++ .+|.++++||..-.... ..||+|++.+.-|.-
T Consensus 94 ~~~V~siEr~~~L~~----------------~A~~~L~~l--g~--~nV~v~~gDG~~G~~~~--aPyD~I~Vtaaa~~v 151 (209)
T COG2518 94 VGRVVSIERIEELAE----------------QARRNLETL--GY--ENVTVRHGDGSKGWPEE--APYDRIIVTAAAPEV 151 (209)
T ss_pred hCeEEEEEEcHHHHH----------------HHHHHHHHc--CC--CceEEEECCcccCCCCC--CCcCEEEEeeccCCC
Confidence 346667777764433 256666544 34 34999999999988764 579999999887665
Q ss_pred CCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 195 PAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 195 pa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
| +.+.+.|++||+|+.-.+
T Consensus 152 P----------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 152 P----------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred C----------HHHHHhcccCCEEEEEEc
Confidence 5 356667999999998554
No 38
>PRK13699 putative methylase; Provisional
Probab=95.39 E-value=0.05 Score=50.52 Aligned_cols=60 Identities=17% Similarity=0.361 Sum_probs=44.2
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCCCCCCC----C----cCC---CCHHHHHHHHHhcCCCcEEEEec
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP----A----QEL---VEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp----a----~~L---~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+++.+|+++.|++.++++.|+||.|.+=-.+. . ... +..++++.++|+|+|||+++...
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 378999999999999889999999996421110 0 011 12467788999999999998743
No 39
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=95.30 E-value=0.047 Score=49.88 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=53.7
Q ss_pred CCeEEEEchHHHH--H----hhCCCCceeEEEECCCC-CCCCCc--CC----CCHHHHHHHHHhcCCCcEEEEeccchhh
Q 019882 161 PRVRLHIGDAVEF--L----RQVPRGKYDAIIVDSSD-PVGPAQ--EL----VEKPFFDTIAKALRPGGVLCNMAESMWL 227 (334)
Q Consensus 161 pRv~viv~Dg~~f--L----~~~~~~~yDvIIvD~~d-p~gpa~--~L----~t~eFy~~v~~~L~~gGilv~q~~sp~~ 227 (334)
+.++++.+|.... + +...++.||+|+.|..- ..+.+. .. ...+.++.+.+.|+|||.++.-. |
T Consensus 91 ~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~---~- 166 (209)
T PRK11188 91 VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV---F- 166 (209)
T ss_pred CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE---e-
Confidence 5689999997653 1 22334689999999742 222110 00 02467899999999999999722 1
Q ss_pred hhhHHHHHHHHHHHhcCCceeE
Q 019882 228 HTHLIEDMISICRETFKGSVHY 249 (334)
Q Consensus 228 ~~~~~~~i~~tl~~vF~~~v~~ 249 (334)
..+.+..++..++..|. .+..
T Consensus 167 ~~~~~~~~l~~l~~~f~-~v~~ 187 (209)
T PRK11188 167 QGEGFDEYLREIRSLFT-KVKV 187 (209)
T ss_pred cCcCHHHHHHHHHhCce-EEEE
Confidence 22345666778888888 5543
No 40
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.16 E-value=0.068 Score=57.48 Aligned_cols=64 Identities=22% Similarity=0.417 Sum_probs=45.1
Q ss_pred CCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcC---CC-----CHHHHHHHHHhcCCCcEEEEecc
Q 019882 158 FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQE---LV-----EKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 158 ~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~---L~-----t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
++..+++++.+|+++|+++. +++||+||+|.+--. .... ++ -.+.++.+.+.|+|||+++.-+.
T Consensus 586 ~~~~~v~~i~~D~~~~l~~~-~~~fDlIilDPP~f~-~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 586 LSGRQHRLIQADCLAWLKEA-REQFDLIFIDPPTFS-NSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCccceEEEEccHHHHHHHc-CCCcCEEEECCCCCC-CCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 44468999999999999765 468999999975311 1111 11 13466777889999999987443
No 41
>PLN03075 nicotianamine synthase; Provisional
Probab=95.10 E-value=0.087 Score=51.04 Aligned_cols=87 Identities=14% Similarity=0.253 Sum_probs=57.9
Q ss_pred EECCeEEeeccchhHHHHHhhhhccccCCChhhhHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCC
Q 019882 113 VLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDP 192 (334)
Q Consensus 113 ~LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkrvak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp 192 (334)
.-+|.+-..+.|+.... .||+++..- .++ .+|++++.+|+.+.... .+.||+|++++--.
T Consensus 147 ~p~~~~~giD~d~~ai~----------------~Ar~~~~~~-~gL-~~rV~F~~~Da~~~~~~--l~~FDlVF~~ALi~ 206 (296)
T PLN03075 147 LPTTSFHNFDIDPSAND----------------VARRLVSSD-PDL-SKRMFFHTADVMDVTES--LKEYDVVFLAALVG 206 (296)
T ss_pred CCCCEEEEEeCCHHHHH----------------HHHHHhhhc-cCc-cCCcEEEECchhhcccc--cCCcCEEEEecccc
Confidence 34556666666664433 367766321 123 47999999999985432 25799999995311
Q ss_pred CCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 193 VGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 193 ~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
..... -.+.++.+.+.|+|||+++...
T Consensus 207 ~dk~~---k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 207 MDKEE---KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ccccc---HHHHHHHHHHhcCCCcEEEEec
Confidence 11111 1579999999999999999865
No 42
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=94.89 E-value=0.12 Score=45.85 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=49.7
Q ss_pred CCeEEEEchHHHH-----Hh-hCCCCceeEEEECCCCCC-CC--CcCCC----CHHHHHHHHHhcCCCcEEEEeccchhh
Q 019882 161 PRVRLHIGDAVEF-----LR-QVPRGKYDAIIVDSSDPV-GP--AQELV----EKPFFDTIAKALRPGGVLCNMAESMWL 227 (334)
Q Consensus 161 pRv~viv~Dg~~f-----L~-~~~~~~yDvIIvD~~dp~-gp--a~~L~----t~eFy~~v~~~L~~gGilv~q~~sp~~ 227 (334)
++++++.+|..+. +. ..+.++||+|+.|...+. +. ..++- ...+++.+.+.|+|||.++... .
T Consensus 72 ~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~----~ 147 (188)
T TIGR00438 72 ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV----F 147 (188)
T ss_pred CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE----c
Confidence 4677777776431 21 223457999999976331 11 11111 1578999999999999999753 1
Q ss_pred hhhHHHHHHHHHHHhcC
Q 019882 228 HTHLIEDMISICRETFK 244 (334)
Q Consensus 228 ~~~~~~~i~~tl~~vF~ 244 (334)
....+..++..++..|.
T Consensus 148 ~~~~~~~~l~~l~~~~~ 164 (188)
T TIGR00438 148 QGEEIDEYLNELRKLFE 164 (188)
T ss_pred cCccHHHHHHHHHhhhc
Confidence 22334567777777776
No 43
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=94.84 E-value=0.039 Score=44.48 Aligned_cols=54 Identities=28% Similarity=0.388 Sum_probs=40.9
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+..++... .++||+|+++.... . ..++++.+++.|+|||.++...
T Consensus 69 ~~~~~~~~~~~~~~~~~-~~~~D~v~~~~~~~------~-~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 69 SNIVIVEGDAPEALEDS-LPEPDRVFIGGSGG------L-LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CceEEEeccccccChhh-cCCCCEEEECCcch------h-HHHHHHHHHHHcCCCCEEEEEe
Confidence 57899999987655443 35899999976321 1 2489999999999999999743
No 44
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=94.80 E-value=0.21 Score=45.48 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=39.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++++++.+|+..+- .++++||+|++...-...+ -..++++.+.+.|+|||.++..
T Consensus 96 ~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~~----~~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 96 HNVELVHGNAMELP--FDDNSFDYVTIGFGLRNVP----DYMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred CceEEEEechhcCC--CCCCCccEEEEecccccCC----CHHHHHHHHHHHcCcCeEEEEE
Confidence 58999999987642 2246899999864321111 1146889999999999999864
No 45
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.66 E-value=0.011 Score=47.34 Aligned_cols=56 Identities=29% Similarity=0.463 Sum_probs=40.8
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
..+++++.+|..+++.+...++||+|++|+... .. .....++.+.++|+|||+++.
T Consensus 48 ~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~-~~----~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 48 SDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS-YE----AVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp -BTEEEEES-THHHHHHHHH--EEEEEEES----HH----HHHHHHHHHGGGEEEEEEEEE
T ss_pred CCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC-HH----HHHHHHHHHHHHcCCCeEEEE
Confidence 358999999999999876446899999999521 11 235688999999999999986
No 46
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=94.56 E-value=0.18 Score=48.28 Aligned_cols=60 Identities=27% Similarity=0.325 Sum_probs=41.7
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCC------------CCcCC--------CCHHHHHHHHHhcCCCcEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVG------------PAQEL--------VEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~g------------pa~~L--------~t~eFy~~v~~~L~~gGilv 219 (334)
.+++++.+|..+.+. +++||+||.|.+- +.. |...| +.+.+++.+.+.|+|||.++
T Consensus 172 ~~i~~~~~D~~~~~~---~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~ 248 (284)
T TIGR03533 172 DRVTLIQSDLFAALP---GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLV 248 (284)
T ss_pred CcEEEEECchhhccC---CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 589999999987663 3479999998542 110 00111 12567788889999999999
Q ss_pred Eecc
Q 019882 220 NMAE 223 (334)
Q Consensus 220 ~q~~ 223 (334)
...+
T Consensus 249 ~e~g 252 (284)
T TIGR03533 249 VEVG 252 (284)
T ss_pred EEEC
Confidence 8655
No 47
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=94.49 E-value=0.02 Score=50.29 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=39.5
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCCCCCCCC-cCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPA-QELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa-~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
++++..|..+.+. +++||+||...+--.+.. ....-++|++.+++.|+|||.+..
T Consensus 83 v~~~~~d~~~~~~---~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 83 VEVVQSDLFEALP---DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp EEEEESSTTTTCC---TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccccc---ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 9999999887765 368999999976322221 123458899999999999998854
No 48
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=94.48 E-value=0.13 Score=46.78 Aligned_cols=60 Identities=23% Similarity=0.407 Sum_probs=41.7
Q ss_pred HHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 147 SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 147 ak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++.+... ++ .+++++.+|+.+.+.. ...||+|++|...+.- .+.+.+.|+|||.++...
T Consensus 118 A~~~~~~~--g~--~~v~~~~~d~~~~~~~--~~~fD~Ii~~~~~~~~----------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 118 AERRLRKL--GL--DNVIVIVGDGTQGWEP--LAPYDRIYVTAAGPKI----------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred HHHHHHHC--CC--CCeEEEECCcccCCcc--cCCCCEEEEcCCcccc----------cHHHHHhcCcCcEEEEEE
Confidence 55555432 22 5799999999876543 2579999998753322 245778899999999744
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=94.23 E-value=0.16 Score=45.39 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=40.7
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
++++++.+|+.++. . .++||+|+++.. . .-.++++.+++.|+|||+++...++
T Consensus 92 ~~i~~i~~d~~~~~--~-~~~fD~I~s~~~---~-----~~~~~~~~~~~~LkpgG~lvi~~~~ 144 (181)
T TIGR00138 92 NNVEIVNGRAEDFQ--H-EEQFDVITSRAL---A-----SLNVLLELTLNLLKVGGYFLAYKGK 144 (181)
T ss_pred CCeEEEecchhhcc--c-cCCccEEEehhh---h-----CHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 36999999998852 2 368999999762 1 1146889999999999999986543
No 50
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=94.01 E-value=0.17 Score=45.42 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=50.1
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 240 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~ 240 (334)
.+++++.+|+.+++... ...||.||+..... --.++++.+.+.|+|||.++.... ..+....+...++
T Consensus 92 ~~v~~~~~d~~~~l~~~-~~~~D~V~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~~l~ 159 (198)
T PRK00377 92 NNIVLIKGEAPEILFTI-NEKFDRIFIGGGSE-------KLKEIISASWEIIKKGGRIVIDAI----LLETVNNALSALE 159 (198)
T ss_pred CCeEEEEechhhhHhhc-CCCCCEEEECCCcc-------cHHHHHHHHHHHcCCCcEEEEEee----cHHHHHHHHHHHH
Confidence 58999999999988765 35799999965221 125789999999999999987432 1233556666665
Q ss_pred Hh
Q 019882 241 ET 242 (334)
Q Consensus 241 ~v 242 (334)
+.
T Consensus 160 ~~ 161 (198)
T PRK00377 160 NI 161 (198)
T ss_pred Hc
Confidence 53
No 51
>PRK04266 fibrillarin; Provisional
Probab=93.91 E-value=0.3 Score=45.34 Aligned_cols=77 Identities=21% Similarity=0.179 Sum_probs=48.4
Q ss_pred CCeEEEEchHHHHH--hhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc-ch--h--hhhhHHH
Q 019882 161 PRVRLHIGDAVEFL--RQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE-SM--W--LHTHLIE 233 (334)
Q Consensus 161 pRv~viv~Dg~~fL--~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~-sp--~--~~~~~~~ 233 (334)
+++..+.+|+..-. ... .++||+|+.|..+|... ..+.+.+++.|+|||.++.... ++ + .....++
T Consensus 120 ~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~~~p~~~------~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~ 192 (226)
T PRK04266 120 KNIIPILADARKPERYAHV-VEKVDVIYQDVAQPNQA------EIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFK 192 (226)
T ss_pred CCcEEEECCCCCcchhhhc-cccCCEEEECCCChhHH------HHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHH
Confidence 57888899975411 112 24699999998765421 3367899999999999987311 00 1 1123345
Q ss_pred HHHHHHHHh-cC
Q 019882 234 DMISICRET-FK 244 (334)
Q Consensus 234 ~i~~tl~~v-F~ 244 (334)
...+.+.+. |.
T Consensus 193 ~~~~~l~~aGF~ 204 (226)
T PRK04266 193 EEIRKLEEGGFE 204 (226)
T ss_pred HHHHHHHHcCCe
Confidence 556777765 76
No 52
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.72 E-value=0.3 Score=50.60 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=55.7
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCC----CCcCCCCHHHHHHHHHhcCCCcEEEEeccchhh
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVG----PAQELVEKPFFDTIAKALRPGGVLCNMAESMWL 227 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~g----pa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~ 227 (334)
.++.++.+|+..+....++++.|-|.+=-+||+- .-.+|.+.+|++.+++.|+|||.+-..+++..+
T Consensus 397 ~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y 467 (506)
T PRK01544 397 TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENY 467 (506)
T ss_pred CeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence 4788898998766666666789999999999983 256899999999999999999999987765443
No 53
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=93.62 E-value=0.07 Score=47.94 Aligned_cols=60 Identities=23% Similarity=0.414 Sum_probs=40.3
Q ss_pred CCeEEEEchHHHHHhhC--CCCceeEEEECCCCCCCCCcCCCCHHHHHHHH--HhcCCCcEEEEeccc
Q 019882 161 PRVRLHIGDAVEFLRQV--PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIA--KALRPGGVLCNMAES 224 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~--~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~--~~L~~gGilv~q~~s 224 (334)
.+++++..|++.++.+. ...+||+|++|.+ ... .++-.+.++.+. ..|+++|+++....+
T Consensus 92 ~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPP--Y~~--~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 92 DKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPP--YAK--GLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp GGEEEEESSHHHHHHHHHHCTS-EEEEEE--S--TTS--CHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred cceeeeccCHHHHHHhhcccCCCceEEEECCC--ccc--chHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 38999999999999664 3578999999964 211 111244556665 788999999986543
No 54
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=93.60 E-value=0.4 Score=48.74 Aligned_cols=62 Identities=31% Similarity=0.381 Sum_probs=44.0
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCC----Cc--CCC-----------CHHHHHHHHHhcCCCcEEEEecc
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGP----AQ--ELV-----------EKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gp----a~--~L~-----------t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
+++++.+|+..+.. ++.||+|++|++- ..|. +. -.. ..++++.+.+.|+|||+++..+.
T Consensus 302 ~v~~~~~Da~~~~~---~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 302 IIETIEGDARSFSP---EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred eEEEEeCccccccc---CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 69999999988752 3579999999763 2221 10 011 24688999999999999998665
Q ss_pred chh
Q 019882 224 SMW 226 (334)
Q Consensus 224 sp~ 226 (334)
|..
T Consensus 379 s~~ 381 (445)
T PRK14904 379 SIE 381 (445)
T ss_pred CCC
Confidence 543
No 55
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=93.51 E-value=0.36 Score=45.61 Aligned_cols=80 Identities=26% Similarity=0.298 Sum_probs=50.7
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCC-CCC----CcC--C-----------CCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDP-VGP----AQE--L-----------VEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp-~gp----a~~--L-----------~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+++++..|+..+-.. .+.||+|++|++-. .|. +.. . ...+.++.+.+.|+|||+++-.+
T Consensus 122 ~~v~~~~~D~~~~~~~--~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 122 LNVAVTNFDGRVFGAA--VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred CcEEEecCCHHHhhhh--ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 3699999999876543 24699999998642 121 111 1 23568888899999999998654
Q ss_pred cchhhhhhHHHHHHHHHHHhcC
Q 019882 223 ESMWLHTHLIEDMISICRETFK 244 (334)
Q Consensus 223 ~sp~~~~~~~~~i~~tl~~vF~ 244 (334)
.+. .+..-..+++.+.+.++
T Consensus 200 cs~--~~~Ene~vv~~~l~~~~ 219 (264)
T TIGR00446 200 CSL--EPEENEAVVDYLLEKRP 219 (264)
T ss_pred CCC--ChHHHHHHHHHHHHhCC
Confidence 342 22223445555555555
No 56
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=93.45 E-value=0.62 Score=45.19 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=41.6
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCC-CC------------CCCcCCC--------CHHHHHHHHHhcCCCcEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PV------------GPAQELV--------EKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~------------gpa~~L~--------t~eFy~~v~~~L~~gGilv 219 (334)
.|++++.+|..+.+. +++||+||.+.+- +. .|...|+ .+.+++.+.+.|+|||.++
T Consensus 184 ~~i~~~~~D~~~~l~---~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~ 260 (307)
T PRK11805 184 DRVTLIESDLFAALP---GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV 260 (307)
T ss_pred CcEEEEECchhhhCC---CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence 589999999887763 3479999998532 10 0111122 2567788889999999999
Q ss_pred Eecc
Q 019882 220 NMAE 223 (334)
Q Consensus 220 ~q~~ 223 (334)
.-.+
T Consensus 261 ~E~g 264 (307)
T PRK11805 261 VEVG 264 (307)
T ss_pred EEEC
Confidence 7554
No 57
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=93.36 E-value=0.1 Score=47.90 Aligned_cols=60 Identities=27% Similarity=0.453 Sum_probs=40.7
Q ss_pred HHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 147 SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 147 ak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
|++.+..+ .-.+++++.+||..-+... ..||.|++.+.-+.-| ..+.+.|++||++|+-.
T Consensus 113 A~~~l~~~----~~~nv~~~~gdg~~g~~~~--apfD~I~v~~a~~~ip----------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 113 ARRNLARL----GIDNVEVVVGDGSEGWPEE--APFDRIIVTAAVPEIP----------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp HHHHHHHH----TTHSEEEEES-GGGTTGGG---SEEEEEESSBBSS------------HHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHh----ccCceeEEEcchhhccccC--CCcCEEEEeeccchHH----------HHHHHhcCCCcEEEEEE
Confidence 55555433 2349999999998876653 4799999998654333 34666799999999743
No 58
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=93.08 E-value=0.25 Score=36.98 Aligned_cols=59 Identities=27% Similarity=0.314 Sum_probs=44.1
Q ss_pred CCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 159 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
..++++++.+|...+.... ..+||+|+.+..-... .-....+++.+.+.|+++|+++..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~-~~~~d~i~~~~~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 45 LADNVEVLKGDAEELPPEA-DESFDVIISDPPLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cccceEEEEcChhhhcccc-CCceEEEEEccceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3468999999999887522 3579999998753210 123467889999999999999864
No 59
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.96 E-value=0.29 Score=44.69 Aligned_cols=50 Identities=22% Similarity=0.392 Sum_probs=36.5
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+++++.+|+...... ...||+|+++..-+. .-+.+.+.|+|||.++...
T Consensus 127 ~~v~~~~gd~~~~~~~--~~~fD~I~~~~~~~~----------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 127 DNVEVIVGDGTLGYEE--NAPYDRIYVTAAGPD----------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCeEEEECCcccCCCc--CCCcCEEEECCCccc----------chHHHHHhhCCCcEEEEEE
Confidence 4799999999765433 357999999875322 1245667899999998743
No 60
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=92.93 E-value=0.18 Score=43.87 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=39.6
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++++++.+|+.+. . .++++||+|++-..=..- . --.++++.++++|+|||.++..
T Consensus 26 ~~i~~~~~d~~~l-p-~~~~~fD~v~~~~~l~~~-~---d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 26 KCIEWIEGDAIDL-P-FDDCEFDAVTMGYGLRNV-V---DRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CceEEEEechhhC-C-CCCCCeeEEEecchhhcC-C---CHHHHHHHHHHHcCcCeEEEEE
Confidence 5799999998764 3 235689999975321111 1 1257999999999999999864
No 61
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=92.89 E-value=0.68 Score=40.94 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=47.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 240 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~ 240 (334)
++++++.+|+...+ .++||+|+++.... .-.++++.+.+.|+|||.++...-. ......+.+.+.
T Consensus 81 ~~i~~~~~d~~~~~----~~~~D~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~lv~~~~~----~~~~~~~~~~l~ 145 (187)
T PRK08287 81 GNIDIIPGEAPIEL----PGKADAIFIGGSGG-------NLTAIIDWSLAHLHPGGRLVLTFIL----LENLHSALAHLE 145 (187)
T ss_pred CCeEEEecCchhhc----CcCCCEEEECCCcc-------CHHHHHHHHHHhcCCCeEEEEEEec----HhhHHHHHHHHH
Confidence 46999999975433 24799999975421 2257899999999999999874311 112344555555
Q ss_pred Hh-cCCceeE
Q 019882 241 ET-FKGSVHY 249 (334)
Q Consensus 241 ~v-F~~~v~~ 249 (334)
+. |. .+..
T Consensus 146 ~~g~~-~~~~ 154 (187)
T PRK08287 146 KCGVS-ELDC 154 (187)
T ss_pred HCCCC-cceE
Confidence 53 54 3443
No 62
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=92.80 E-value=0.19 Score=50.20 Aligned_cols=51 Identities=27% Similarity=0.403 Sum_probs=42.2
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
+++++.+|+..++... .++||+|++|.+ |.+ .+|++.+.+.++++|++.+-
T Consensus 96 ~~~v~~~Da~~~l~~~-~~~fDvIdlDPf---Gs~-----~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 96 NIEVPNEDAANVLRYR-NRKFHVIDIDPF---GTP-----APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred cEEEEchhHHHHHHHh-CCCCCEEEeCCC---CCc-----HHHHHHHHHhcccCCEEEEE
Confidence 6899999999999876 367999999885 221 26999999999999998753
No 63
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=92.71 E-value=1.2 Score=40.07 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=40.5
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
+++++.+|+.++-. +++||+|++..... -.+|++.+.+.|+|||+++.....
T Consensus 96 ~i~~~~~d~~~~~~---~~~fDlV~~~~~~~--------~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 96 NVTVVHGRAEEFGQ---EEKFDVVTSRAVAS--------LSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred CEEEEeccHhhCCC---CCCccEEEEccccC--------HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 49999999987532 35899999976321 157999999999999999976543
No 64
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=92.69 E-value=0.38 Score=48.84 Aligned_cols=62 Identities=26% Similarity=0.423 Sum_probs=43.4
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCCCc----C-----------C--CCHHHHHHHHHhcCCCcEEEEecc
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGPAQ----E-----------L--VEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gpa~----~-----------L--~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
+++++.+|+..+-... +++||.|++|++- ..|... . | ...+.+..+.+.|+|||+++--+.
T Consensus 289 ~v~~~~~Da~~l~~~~-~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 289 SIEIKIADAERLTEYV-QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred eEEEEECchhhhhhhh-hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 5899999998764322 3579999999865 223210 0 0 246678889999999999986544
Q ss_pred c
Q 019882 224 S 224 (334)
Q Consensus 224 s 224 (334)
|
T Consensus 368 s 368 (431)
T PRK14903 368 T 368 (431)
T ss_pred C
Confidence 4
No 65
>PTZ00146 fibrillarin; Provisional
Probab=92.48 E-value=0.88 Score=44.10 Aligned_cols=98 Identities=15% Similarity=0.128 Sum_probs=58.9
Q ss_pred CCeEEEEchHHHH--HhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE--eccchhhh---hhHHH
Q 019882 161 PRVRLHIGDAVEF--LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN--MAESMWLH---THLIE 233 (334)
Q Consensus 161 pRv~viv~Dg~~f--L~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~--q~~sp~~~---~~~~~ 233 (334)
+++..+++|++.- +... .+.+|+|++|...|+.. +.+...+++.|+|||.+++ ...+.... .+.++
T Consensus 181 ~NI~~I~~Da~~p~~y~~~-~~~vDvV~~Dva~pdq~------~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~ 253 (293)
T PTZ00146 181 PNIVPIIEDARYPQKYRML-VPMVDVIFADVAQPDQA------RIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFA 253 (293)
T ss_pred CCCEEEECCccChhhhhcc-cCCCCEEEEeCCCcchH------HHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHH
Confidence 6889999998642 1112 24799999999755421 2355678999999999886 22232221 12344
Q ss_pred HHHHHHHHh-cCCceeEEEEEeeecCCCcEEEEEeec
Q 019882 234 DMISICRET-FKGSVHYAWASVPTYPSGIIGFLICST 269 (334)
Q Consensus 234 ~i~~tl~~v-F~~~v~~~~~~vPsyp~g~w~f~laSk 269 (334)
.-++.|++. |. .+.. ..++-|.-. -..+++-.
T Consensus 254 ~ev~~L~~~GF~-~~e~--v~L~Py~~~-h~~v~~~~ 286 (293)
T PTZ00146 254 SEVQKLKKEGLK-PKEQ--LTLEPFERD-HAVVIGVY 286 (293)
T ss_pred HHHHHHHHcCCc-eEEE--EecCCccCC-cEEEEEEE
Confidence 545888886 87 4433 344445433 24444443
No 66
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=92.42 E-value=0.15 Score=48.71 Aligned_cols=55 Identities=33% Similarity=0.648 Sum_probs=37.6
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEE-ECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAII-VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvII-vD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
..+++|+.+|-+++ + .+||.|+ +......+.. .-..||+.+.+.|+|||.++.|.
T Consensus 111 ~~~v~v~~~D~~~~----~-~~fD~IvSi~~~Ehvg~~---~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 111 EDRVEVRLQDYRDL----P-GKFDRIVSIEMFEHVGRK---NYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SSTEEEEES-GGG--------S-SEEEEESEGGGTCGG---GHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCceEEEEeecccc----C-CCCCEEEEEechhhcChh---HHHHHHHHHHHhcCCCcEEEEEe
Confidence 36999999996543 2 3899988 4555444321 22579999999999999999875
No 67
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=92.35 E-value=0.35 Score=43.91 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=41.0
Q ss_pred CCCeEEEEchHHHHHhhCCCC-ceeEEEECCCCCCCCCcCCCCHH-HHHH--HHHhcCCCcEEEEecc
Q 019882 160 DPRVRLHIGDAVEFLRQVPRG-KYDAIIVDSSDPVGPAQELVEKP-FFDT--IAKALRPGGVLCNMAE 223 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~-~yDvIIvD~~dp~gpa~~L~t~e-Fy~~--v~~~L~~gGilv~q~~ 223 (334)
..+++++..|+..+|++.... .||+|++|.+=. ..+...+ -... -...|+|+|++++..+
T Consensus 92 ~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~----~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 92 EGEARVLRNDALRALKQLGTREPFDLVFLDPPYA----KGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred ccceEEEeecHHHHHHhcCCCCcccEEEeCCCCc----cchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 579999999999999887432 399999998532 2233111 1112 2356999999998554
No 68
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=92.08 E-value=0.66 Score=42.09 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=53.5
Q ss_pred CCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHH
Q 019882 158 FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMIS 237 (334)
Q Consensus 158 ~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~ 237 (334)
|.-++++|+.+||-++|.+.+ ++|.|++-..... .+-++.+..+|++||.+|.++-. .+.....++
T Consensus 81 fg~~n~~vv~g~Ap~~L~~~~--~~daiFIGGg~~i--------~~ile~~~~~l~~ggrlV~nait----lE~~~~a~~ 146 (187)
T COG2242 81 FGVDNLEVVEGDAPEALPDLP--SPDAIFIGGGGNI--------EEILEAAWERLKPGGRLVANAIT----LETLAKALE 146 (187)
T ss_pred hCCCcEEEEeccchHhhcCCC--CCCEEEECCCCCH--------HHHHHHHHHHcCcCCeEEEEeec----HHHHHHHHH
Confidence 445899999999999998763 7999999876221 46889999999999999987643 233445555
Q ss_pred HHHHh
Q 019882 238 ICRET 242 (334)
Q Consensus 238 tl~~v 242 (334)
.+++.
T Consensus 147 ~~~~~ 151 (187)
T COG2242 147 ALEQL 151 (187)
T ss_pred HHHHc
Confidence 55553
No 69
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=92.07 E-value=0.61 Score=47.27 Aligned_cols=61 Identities=23% Similarity=0.470 Sum_probs=42.2
Q ss_pred CeEEEEchHHHHHhhC--CCCceeEEEECCCC-CCCC----CcC--CC-----------CHHHHHHHHHhcCCCcEEEEe
Q 019882 162 RVRLHIGDAVEFLRQV--PRGKYDAIIVDSSD-PVGP----AQE--LV-----------EKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~--~~~~yDvIIvD~~d-p~gp----a~~--L~-----------t~eFy~~v~~~L~~gGilv~q 221 (334)
+++++.+|+..+.... ..++||+|++|++- ..|. +.. .. ..+.++.+.+.|+|||.+|..
T Consensus 304 ~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvys 383 (434)
T PRK14901 304 SIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYA 383 (434)
T ss_pred eEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5999999998875321 13579999999863 1221 110 11 367889999999999999864
Q ss_pred c
Q 019882 222 A 222 (334)
Q Consensus 222 ~ 222 (334)
+
T Consensus 384 t 384 (434)
T PRK14901 384 T 384 (434)
T ss_pred e
Confidence 4
No 70
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=91.97 E-value=0.095 Score=39.83 Aligned_cols=56 Identities=23% Similarity=0.377 Sum_probs=37.9
Q ss_pred CCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 159 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...+++++.+|...+ ..++++||+|+.-..=-... --..+++.++|.|+|||.++.
T Consensus 40 ~~~~~~~~~~d~~~l--~~~~~sfD~v~~~~~~~~~~----~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 40 KNEGVSFRQGDAEDL--PFPDNSFDVVFSNSVLHHLE----DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp TTSTEEEEESBTTSS--SS-TT-EEEEEEESHGGGSS----HHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCchheeehHHhC--ccccccccccccccceeecc----CHHHHHHHHHHHcCcCeEEeC
Confidence 346777999997766 23467999998754311111 224689999999999999874
No 71
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.90 E-value=0.21 Score=45.26 Aligned_cols=49 Identities=29% Similarity=0.412 Sum_probs=37.1
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.+++++.+|+.+.+.. ...||+|+++..-+ .+-+.+.+.|+|||.++..
T Consensus 124 ~~v~~~~~d~~~~~~~--~~~fD~Ii~~~~~~----------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 124 GVVEVYHGDGKRGLEK--HAPFDAIIVTAAAS----------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred CcEEEEECCcccCCcc--CCCccEEEEccCcc----------hhhHHHHHhcCcCcEEEEE
Confidence 4799999999876653 35799999997532 1234677889999999873
No 72
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=91.86 E-value=0.27 Score=49.86 Aligned_cols=62 Identities=23% Similarity=0.442 Sum_probs=43.1
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCC-CC-----CCcCC------------CCHHHHHHHHHhcCCCcEEEEecc
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDP-VG-----PAQEL------------VEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp-~g-----pa~~L------------~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
+++++.+|+.++..... ++||+|++|++-. .| |.... ...++++.+.+.|+|||.++..+.
T Consensus 302 ~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 302 NIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred eEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 49999999988754433 5799999998521 11 10000 135689999999999999996543
Q ss_pred c
Q 019882 224 S 224 (334)
Q Consensus 224 s 224 (334)
+
T Consensus 381 s 381 (444)
T PRK14902 381 T 381 (444)
T ss_pred C
Confidence 4
No 73
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=91.77 E-value=0.46 Score=43.46 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=40.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCC-C----CCcCCC-----------------CHHHHHHHHHhcCCCcEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV-G----PAQELV-----------------EKPFFDTIAKALRPGGVL 218 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~-g----pa~~L~-----------------t~eFy~~v~~~L~~gGil 218 (334)
++++++.+|+.+.+. .++||+||.+.+=-. + ...... -..|++.+.+.|+|||.+
T Consensus 137 ~~~~~~~~d~~~~~~---~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~ 213 (251)
T TIGR03534 137 DNVTFLQSDWFEPLP---GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWL 213 (251)
T ss_pred CeEEEEECchhccCc---CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEE
Confidence 479999999887542 357999999764110 0 000000 146788999999999999
Q ss_pred EEec
Q 019882 219 CNMA 222 (334)
Q Consensus 219 v~q~ 222 (334)
+...
T Consensus 214 ~~~~ 217 (251)
T TIGR03534 214 LLEI 217 (251)
T ss_pred EEEE
Confidence 9754
No 74
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=91.74 E-value=0.41 Score=44.59 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=41.0
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++++++.+|..+..... +++||+|++...=..-. . ...+++.+.+.|+|||+++...
T Consensus 92 ~~~v~~~~~d~~~l~~~~-~~~fD~V~~~~vl~~~~-~---~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 92 SDNMQFIHCAAQDIAQHL-ETPVDLILFHAVLEWVA-D---PKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ccceEEEEcCHHHHhhhc-CCCCCEEEehhHHHhhC-C---HHHHHHHHHHHcCCCeEEEEEE
Confidence 478999999998764333 46899999754210000 0 1468999999999999998643
No 75
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=91.61 E-value=0.65 Score=47.82 Aligned_cols=61 Identities=26% Similarity=0.424 Sum_probs=43.9
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCC-CCCC----cCC-------------CCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDP-VGPA----QEL-------------VEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp-~gpa----~~L-------------~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.++.+...|+..+-+.. ...||.|++|++-. .|.- ... ..++..+.+.+.|+|||++|--+
T Consensus 164 ~nv~v~~~D~~~~~~~~-~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 164 SNVALTHFDGRVFGAAL-PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CeEEEEeCchhhhhhhc-hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 46899999999876554 35799999999853 3331 111 23677888899999999998533
No 76
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=91.47 E-value=0.36 Score=44.80 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=41.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+..+.. .++||+|+....-..-+ -...+++.+.++|+|||.++.+.
T Consensus 76 ~~~~~~~~d~~~~~~---~~~fD~v~~~~~l~~~~----d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 76 PDCQFVEADIASWQP---PQALDLIFANASLQWLP----DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCCeEEECchhccCC---CCCccEEEEccChhhCC----CHHHHHHHHHHhcCCCcEEEEEC
Confidence 468899999887642 35799999876532211 12579999999999999999865
No 77
>PRK07402 precorrin-6B methylase; Provisional
Probab=91.46 E-value=0.84 Score=40.72 Aligned_cols=55 Identities=29% Similarity=0.430 Sum_probs=41.5
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
++++++.+|+.+.+.... ..+|.|++|...+ -.++++.+.+.|+|||.++....+
T Consensus 90 ~~v~~~~~d~~~~~~~~~-~~~d~v~~~~~~~--------~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 90 KNVEVIEGSAPECLAQLA-PAPDRVCIEGGRP--------IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCeEEEECchHHHHhhCC-CCCCEEEEECCcC--------HHHHHHHHHHhcCCCeEEEEEeec
Confidence 479999999987665442 3578888875321 257999999999999999986543
No 78
>PRK14967 putative methyltransferase; Provisional
Probab=91.02 E-value=0.81 Score=41.80 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=38.3
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCCC----------------cCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGPA----------------QELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gpa----------------~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+++++.+|..+++. +++||+||.+.+- +.... ....-..|++.+.+.|++||.++.
T Consensus 85 ~~~~~~~d~~~~~~---~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 85 DVDVRRGDWARAVE---FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred eeEEEECchhhhcc---CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 58899999877653 3579999998631 11000 000125688889999999999985
No 79
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=90.65 E-value=0.59 Score=46.82 Aligned_cols=49 Identities=29% Similarity=0.634 Sum_probs=39.4
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.++++.+|+..++.. .++||+|++|.+ |.+ .+|++...+.++++|++.+
T Consensus 108 ~~~v~~~Da~~~l~~--~~~fD~V~lDP~---Gs~-----~~~l~~al~~~~~~gilyv 156 (382)
T PRK04338 108 NEKVFNKDANALLHE--ERKFDVVDIDPF---GSP-----APFLDSAIRSVKRGGLLCV 156 (382)
T ss_pred ceEEEhhhHHHHHhh--cCCCCEEEECCC---CCc-----HHHHHHHHHHhcCCCEEEE
Confidence 567999999999864 356999999975 322 4699998888999999875
No 80
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=90.53 E-value=0.46 Score=43.55 Aligned_cols=77 Identities=27% Similarity=0.425 Sum_probs=49.1
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCH----HHHHHHHHhcCCCcEEEEec-----cchhhhhh
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEK----PFFDTIAKALRPGGVLCNMA-----ESMWLHTH 230 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~----eFy~~v~~~L~~gGilv~q~-----~sp~~~~~ 230 (334)
-|+|+++..|--++. ++++||+|++=- ....|-.. .+.+.+.++|+|||.+|.-. ..-|.|..
T Consensus 88 ~~~V~~~~~dvp~~~---P~~~FDLIV~SE-----VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ 159 (201)
T PF05401_consen 88 LPHVEWIQADVPEFW---PEGRFDLIVLSE-----VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAA 159 (201)
T ss_dssp -SSEEEEES-TTT------SS-EEEEEEES------GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S-
T ss_pred CCCeEEEECcCCCCC---CCCCeeEEEEeh-----HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCccc
Confidence 379999999987764 357899998742 12223322 37788899999999999621 23356666
Q ss_pred HHHHHHHHHHHhcC
Q 019882 231 LIEDMISICRETFK 244 (334)
Q Consensus 231 ~~~~i~~tl~~vF~ 244 (334)
-.+.+.+.+.+.|.
T Consensus 160 ga~tv~~~~~~~~~ 173 (201)
T PF05401_consen 160 GAETVLEMLQEHLT 173 (201)
T ss_dssp -HHHHHHHHHHHSE
T ss_pred chHHHHHHHHHHhh
Confidence 67888888888887
No 81
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=90.27 E-value=0.9 Score=45.93 Aligned_cols=64 Identities=23% Similarity=0.392 Sum_probs=42.4
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCC----Cc-C-CC-----------CHHHHHHHHHhcCCCcEEEEecc
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGP----AQ-E-LV-----------EKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gp----a~-~-L~-----------t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
+++++.+|+.+......+++||.|++|.+- ..|. +. . .. ..++++.+.+.|+|||.++..+.
T Consensus 294 ~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 294 KATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 478999999864332223579999999863 2221 11 0 11 23688899999999999996544
Q ss_pred ch
Q 019882 224 SM 225 (334)
Q Consensus 224 sp 225 (334)
+.
T Consensus 374 s~ 375 (427)
T PRK10901 374 SI 375 (427)
T ss_pred CC
Confidence 43
No 82
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=90.13 E-value=0.29 Score=41.69 Aligned_cols=55 Identities=25% Similarity=0.428 Sum_probs=41.8
Q ss_pred CCeEEEEchHHHHHhhC-CCCceeEEEECCCCCCCCCcCCC-CHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQV-PRGKYDAIIVDSSDPVGPAQELV-EKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~-~~~~yDvIIvD~~dp~gpa~~L~-t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|..+ +.+. + ++||+||....- ..+- ...+++.+.+.|+++|+++...
T Consensus 54 ~ni~~~~~d~~~-l~~~~~-~~~D~I~~~~~l-----~~~~~~~~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 54 DNIEFIQGDIED-LPQELE-EKFDIIISNGVL-----HHFPDPEKVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp TTEEEEESBTTC-GCGCSS-TTEEEEEEESTG-----GGTSHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccceEEeehhc-cccccC-CCeeEEEEcCch-----hhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence 499999999999 6543 2 589999998643 1111 1368999999999999998744
No 83
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=89.91 E-value=1.1 Score=40.79 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=37.5
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHh--cCCCcEEEEec
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA--LRPGGVLCNMA 222 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~--L~~gGilv~q~ 222 (334)
+++++.+|+.+++... .+.||+||+|.+-..+ +..+-.+.+.+. |+++|++++..
T Consensus 103 ~v~~~~~D~~~~l~~~-~~~fDlV~~DPPy~~g-----~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 103 NARVVNTNALSFLAQP-GTPHNVVFVDPPFRKG-----LLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred cEEEEEchHHHHHhhc-CCCceEEEECCCCCCC-----hHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 7999999999998653 3579999999862222 112334444443 68889888754
No 84
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=89.87 E-value=0.82 Score=46.17 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=38.5
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCCC-CCCC----CcCC--C-----------CHHHHHHHHHhcCCCcEEEEeccc
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGP----AQEL--V-----------EKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gp----a~~L--~-----------t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
+.++.+|+.........++||+||+|++- ..|. +.-. . ..+.++.+.+.|+|||.+|..+.|
T Consensus 291 v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 291 AETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred EEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 34456666532211123579999999753 2232 1111 1 367888999999999999975544
Q ss_pred h
Q 019882 225 M 225 (334)
Q Consensus 225 p 225 (334)
.
T Consensus 371 ~ 371 (426)
T TIGR00563 371 V 371 (426)
T ss_pred C
Confidence 3
No 85
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=89.87 E-value=0.51 Score=47.28 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=47.9
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCC--CCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVG--PAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISI 238 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~g--pa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~t 238 (334)
.+++++.+|+...+. +++||+|+.+.+=..+ .... ...++|+.++++|+|||.+..-... +. .....
T Consensus 281 ~~v~~~~~D~l~~~~---~~~fDlIlsNPPfh~~~~~~~~-ia~~l~~~a~~~LkpGG~L~iV~nr---~l----~y~~~ 349 (378)
T PRK15001 281 DRCEFMINNALSGVE---PFRFNAVLCNPPFHQQHALTDN-VAWEMFHHARRCLKINGELYIVANR---HL----DYFHK 349 (378)
T ss_pred ceEEEEEccccccCC---CCCEEEEEECcCcccCccCCHH-HHHHHHHHHHHhcccCCEEEEEEec---Cc----CHHHH
Confidence 478999999876552 3479999998642222 1111 2367999999999999998764321 11 13355
Q ss_pred HHHhcC
Q 019882 239 CRETFK 244 (334)
Q Consensus 239 l~~vF~ 244 (334)
|++.|.
T Consensus 350 L~~~fg 355 (378)
T PRK15001 350 LKKIFG 355 (378)
T ss_pred HHHHcC
Confidence 666787
No 86
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=89.80 E-value=1.4 Score=41.81 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=58.1
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCC--C-CC--C------C---cCCCCHHHHHHHHHhcCCCcEEEEeccch
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD--P-VG--P------A---QELVEKPFFDTIAKALRPGGVLCNMAESM 225 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d--p-~g--p------a---~~L~t~eFy~~v~~~L~~gGilv~q~~sp 225 (334)
..|++|+.+|--+|.+.....+||+||+-.+= + .. + + ..+-=.++.+.+++.|+|||.++.-.
T Consensus 94 ~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~--- 170 (248)
T COG4123 94 EERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH--- 170 (248)
T ss_pred hhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe---
Confidence 57999999999999988755579999997641 1 11 1 1 12334688999999999999998622
Q ss_pred hhhhhHHHHHHHHHHHh-cC
Q 019882 226 WLHTHLIEDMISICRET-FK 244 (334)
Q Consensus 226 ~~~~~~~~~i~~tl~~v-F~ 244 (334)
.++.+..++..+++. |.
T Consensus 171 --r~erl~ei~~~l~~~~~~ 188 (248)
T COG4123 171 --RPERLAEIIELLKSYNLE 188 (248)
T ss_pred --cHHHHHHHHHHHHhcCCC
Confidence 345567788888873 54
No 87
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=89.53 E-value=0.53 Score=43.79 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=40.1
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+++++.+|+..+.. .++||+|+....=..-+ . ...+++.++++|+|||.++.+.
T Consensus 72 ~~~~~~~~d~~~~~~---~~~fD~v~~~~~l~~~~-d---~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 72 RGVDARTGDVRDWKP---KPDTDVVVSNAALQWVP-E---HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred cCCcEEEcChhhCCC---CCCceEEEEehhhhhCC-C---HHHHHHHHHHhCCCCcEEEEEc
Confidence 368889999877632 35899999966422211 1 1678999999999999998754
No 88
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=89.33 E-value=0.4 Score=37.86 Aligned_cols=49 Identities=33% Similarity=0.587 Sum_probs=36.6
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEE-CCCCCCCCCcCCCC----HHHHHHHHHhcCCCc
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIV-DSSDPVGPAQELVE----KPFFDTIAKALRPGG 216 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIv-D~~dp~gpa~~L~t----~eFy~~v~~~L~~gG 216 (334)
.++++++.+|+.++-. . +++||+|+. -++ -..++ ..+++.+.++|+|||
T Consensus 48 ~~~~~~~~~D~~~l~~-~-~~~~D~v~~~~~~------~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 48 GPKVRFVQADARDLPF-S-DGKFDLVVCSGLS------LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TTTSEEEESCTTCHHH-H-SSSEEEEEE-TTG------GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCceEEEECCHhHCcc-c-CCCeeEEEEcCCc------cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4599999999988543 3 468999999 331 12244 578999999999998
No 89
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=89.16 E-value=1.1 Score=41.69 Aligned_cols=61 Identities=28% Similarity=0.447 Sum_probs=40.9
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCC-CC-------------CCCcCCCC--------HHHHHHHHHhcCCCcE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PV-------------GPAQELVE--------KPFFDTIAKALRPGGV 217 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~-------------gpa~~L~t--------~eFy~~v~~~L~~gGi 217 (334)
..+++++.+|....+. .++||+||.+.+= +. .|...|+. ..+++.+.+.|+|||.
T Consensus 157 ~~~i~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~ 233 (275)
T PRK09328 157 GARVEFLQGDWFEPLP---GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGW 233 (275)
T ss_pred CCcEEEEEccccCcCC---CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCE
Confidence 4689999999855442 3579999997531 10 11112332 5677778899999999
Q ss_pred EEEecc
Q 019882 218 LCNMAE 223 (334)
Q Consensus 218 lv~q~~ 223 (334)
++...+
T Consensus 234 l~~e~g 239 (275)
T PRK09328 234 LLLEIG 239 (275)
T ss_pred EEEEEC
Confidence 998543
No 90
>PLN02244 tocopherol O-methyltransferase
Probab=89.02 E-value=0.63 Score=45.62 Aligned_cols=56 Identities=21% Similarity=0.409 Sum_probs=39.3
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.++++++.+|+.+.- .++++||+|+.-..-..-+ -...+++.+.+.|+|||.++..
T Consensus 167 ~~~v~~~~~D~~~~~--~~~~~FD~V~s~~~~~h~~----d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 167 SDKVSFQVADALNQP--FEDGQFDLVWSMESGEHMP----DKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred CCceEEEEcCcccCC--CCCCCccEEEECCchhccC----CHHHHHHHHHHHcCCCcEEEEE
Confidence 368999999987632 2346899999733211111 1257999999999999998863
No 91
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=88.26 E-value=1.3 Score=43.06 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=40.8
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCCCCCCC--CcCC---CCHHHHHHHHHhcCCCcEEEEecc
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP--AQEL---VEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp--a~~L---~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
++++.+|+.+. ... ++.||+|++|.+=.... .... .-.++++.+++.|+|||.++....
T Consensus 232 i~~~~~D~~~l-~~~-~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 232 FFVKRGDATKL-PLS-SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CeEEecchhcC-Ccc-cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 88999998863 222 46899999996421111 1111 136799999999999999987553
No 92
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=88.14 E-value=0.61 Score=43.98 Aligned_cols=57 Identities=23% Similarity=0.382 Sum_probs=38.9
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEE-CCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIV-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIv-D~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.++++++.+|.... ..++++||+|+. ++.-..... -...+++.+++.|+|||.++..
T Consensus 98 ~~~i~~~~~D~~~~--~~~~~~FD~V~s~~~l~h~~~~---d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 98 KNKIEFEANDILKK--DFPENTFDMIYSRDAILHLSYA---DKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred CCceEEEECCcccC--CCCCCCeEEEEEhhhHHhCCHH---HHHHHHHHHHHHcCCCcEEEEE
Confidence 46899999997632 123468999997 443111100 1246999999999999999874
No 93
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=87.99 E-value=0.63 Score=46.59 Aligned_cols=55 Identities=31% Similarity=0.564 Sum_probs=40.0
Q ss_pred CCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 158 FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 158 ~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.++.++++...||...|... ++.||+|=+|.+. .+ .+|++.+.++++.||++.+.
T Consensus 99 ~~~~~~~v~~~DAn~ll~~~-~~~fD~IDlDPfG---Sp-----~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 99 LEDERIEVSNMDANVLLYSR-QERFDVIDLDPFG---SP-----APFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp -SGCCEEEEES-HHHHHCHS-TT-EEEEEE--SS----------HHHHHHHHHHEEEEEEEEEE
T ss_pred ccCceEEEehhhHHHHhhhc-cccCCEEEeCCCC---Cc-----cHhHHHHHHHhhcCCEEEEe
Confidence 33449999999999999654 4689999998874 22 35999999999999999863
No 94
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=87.94 E-value=0.74 Score=45.42 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=38.6
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCc-CCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQ-ELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~-~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
..+++..|+...+ .++||+||.+.+=..+... .--..+|++.+.+.|+|||.+..-+
T Consensus 246 ~~~~~~~D~~~~~----~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 246 EGEVFASNVFSDI----KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCEEEEccccccc----CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 4577888886643 3579999997632222110 1123789999999999999987543
No 95
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=87.60 E-value=1.1 Score=42.31 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=38.5
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.++++++.+|+.+. . .++++||+|++-..=..-+ --..+++.+++.|+|||.++.
T Consensus 126 ~~~i~~~~~d~~~l-p-~~~~sfD~V~~~~~l~~~~----d~~~~l~ei~rvLkpGG~l~i 180 (261)
T PLN02233 126 YKNIEWIEGDATDL-P-FDDCYFDAITMGYGLRNVV----DRLKAMQEMYRVLKPGSRVSI 180 (261)
T ss_pred CCCeEEEEcccccC-C-CCCCCEeEEEEecccccCC----CHHHHHHHHHHHcCcCcEEEE
Confidence 35899999998653 2 2346899998743211111 125799999999999999875
No 96
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=87.41 E-value=0.68 Score=41.78 Aligned_cols=60 Identities=23% Similarity=0.423 Sum_probs=40.0
Q ss_pred HHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 147 SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 147 ak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++.+... ++ .+++++.+|+.+-+.. .+.||+|+++..-+. .-+.+.+.|+|||+++...
T Consensus 116 a~~~~~~~--~~--~~v~~~~~d~~~~~~~--~~~fD~I~~~~~~~~----------~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 116 AKRRLKQL--GL--HNVSVRHGDGWKGWPA--YAPFDRILVTAAAPE----------IPRALLEQLKEGGILVAPV 175 (212)
T ss_pred HHHHHHHC--CC--CceEEEECCcccCCCc--CCCcCEEEEccCchh----------hhHHHHHhcCCCcEEEEEE
Confidence 55555433 23 3599999998664432 257999999874321 1245678999999999744
No 97
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=87.17 E-value=1.4 Score=42.00 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=40.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCC------------CCcCC--------CCHHHHHHHHHhcCCCcEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVG------------PAQEL--------VEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~g------------pa~~L--------~t~eFy~~v~~~L~~gGilv 219 (334)
.|++++.+|..+.+. +.+||+||.+.+- +.. |...| +-+.+.+.+.+.|+|||+++
T Consensus 165 ~~v~~~~~d~~~~~~---~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~ 241 (284)
T TIGR00536 165 HRVEFIQSNLFEPLA---GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLV 241 (284)
T ss_pred CcEEEEECchhccCc---CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 579999999877552 2379999997532 111 10111 23457777888999999999
Q ss_pred Eecc
Q 019882 220 NMAE 223 (334)
Q Consensus 220 ~q~~ 223 (334)
.-.+
T Consensus 242 ~e~g 245 (284)
T TIGR00536 242 CEIG 245 (284)
T ss_pred EEEC
Confidence 7554
No 98
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=86.87 E-value=0.76 Score=43.33 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=35.0
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++++|+.+. . .++++||+|+.-. +..+++.+++.|+|||.++...
T Consensus 133 ~~~~~~~~d~~~l-p-~~~~sfD~I~~~~-----------~~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 133 PQVTFCVASSHRL-P-FADQSLDAIIRIY-----------APCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred CCCeEEEeecccC-C-CcCCceeEEEEec-----------CCCCHHHHHhhccCCCEEEEEe
Confidence 6788899997653 2 2246899998522 1235678899999999999754
No 99
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=86.45 E-value=0.87 Score=42.54 Aligned_cols=58 Identities=22% Similarity=0.380 Sum_probs=41.3
Q ss_pred CCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 159 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+..+|.+..+-=-..+.+.+++.||-|.-|.+.+.+. -+++|++.+-+.|+|+|++.-
T Consensus 147 ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yE----dl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 147 EKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYE----DLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred cccceEEEecchHhhhccccccCcceeEeechhhHHH----HHHHHHHHHhhhcCCCceEEE
Confidence 4456665543322344444566799999999876543 247899999999999999984
No 100
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=86.40 E-value=2.3 Score=42.15 Aligned_cols=64 Identities=30% Similarity=0.469 Sum_probs=45.3
Q ss_pred CeEEEEchHHHHHhhCCCC-ceeEEEECCCCC-CCC----Cc-------------CCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 162 RVRLHIGDAVEFLRQVPRG-KYDAIIVDSSDP-VGP----AQ-------------ELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~-~yDvIIvD~~dp-~gp----a~-------------~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+.++..|++.+....... +||.|++|++-- .|. +. .-++.+......+.|+|||++|--+
T Consensus 209 nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 209 NVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred ceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 4889999999887655332 599999999752 232 11 1135677788889999999999655
Q ss_pred cch
Q 019882 223 ESM 225 (334)
Q Consensus 223 ~sp 225 (334)
.|.
T Consensus 289 CS~ 291 (355)
T COG0144 289 CSL 291 (355)
T ss_pred cCC
Confidence 443
No 101
>PHA03411 putative methyltransferase; Provisional
Probab=86.28 E-value=1.8 Score=41.67 Aligned_cols=78 Identities=13% Similarity=0.203 Sum_probs=52.0
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCC--CcC--CCC-----------HHHHHHHHHhcCCCcEEE-Eecc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGP--AQE--LVE-----------KPFFDTIAKALRPGGVLC-NMAE 223 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gp--a~~--L~t-----------~eFy~~v~~~L~~gGilv-~q~~ 223 (334)
++++++.+|.+++.. +++||+||.+.+= +..+ ... -++ ..|...+...|+|+|.+. ...+
T Consensus 109 ~~v~~v~~D~~e~~~---~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss 185 (279)
T PHA03411 109 PEAEWITSDVFEFES---NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG 185 (279)
T ss_pred cCCEEEECchhhhcc---cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec
Confidence 578999999999863 3579999998643 2111 111 121 578889999999999765 4566
Q ss_pred chhhhhhHHHHHHHHHHH
Q 019882 224 SMWLHTHLIEDMISICRE 241 (334)
Q Consensus 224 sp~~~~~~~~~i~~tl~~ 241 (334)
.|++|..+-..-++.+-+
T Consensus 186 ~~~y~~sl~~~~y~~~l~ 203 (279)
T PHA03411 186 RPYYDGTMKSNKYLKWSK 203 (279)
T ss_pred cccccccCCHHHHHHHHH
Confidence 677766554555544443
No 102
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=86.25 E-value=2 Score=41.04 Aligned_cols=113 Identities=23% Similarity=0.315 Sum_probs=55.2
Q ss_pred hHHhhCccccc-------CCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC---CcCCCCHHHHH----HHHHh
Q 019882 146 VSKKYFPELAV-------GFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP---AQELVEKPFFD----TIAKA 211 (334)
Q Consensus 146 vak~~fp~l~~-------~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp---a~~L~t~eFy~----~v~~~ 211 (334)
|-|+|||+=+. .+-..--..+++|-+.|.- +.+||+||.|.+|+..- ...--...||. -++++
T Consensus 82 VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~~---~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~k 158 (299)
T PF06460_consen 82 VLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYMP---PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEK 158 (299)
T ss_dssp HHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEEE---SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHH
T ss_pred HHHHhCCCCcEEEecchhhhccccCCceeccccccCC---CCcccEEEEecccccccccccccCCccccHHHHHHHHHhh
Confidence 77999986431 1212334567788887753 36899999999986521 22333344555 45789
Q ss_pred cCCCcEEEEe-ccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEEEEeecC
Q 019882 212 LRPGGVLCNM-AESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTE 270 (334)
Q Consensus 212 L~~gGilv~q-~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f~laSk~ 270 (334)
|+-||-++.- ++.-| .. .+ -.|.+.|. ....+.+.|-+- ..-+|+++-..
T Consensus 159 LaLGGSvaiKiTE~Sw-~~----~L-yel~~~F~-~wt~FcT~VNtS--SSEaFLigiNY 209 (299)
T PF06460_consen 159 LALGGSVAIKITEHSW-NA----QL-YELMGYFS-WWTCFCTAVNTS--SSEAFLIGINY 209 (299)
T ss_dssp EEEEEEEEEEE-SSS---H----HH-HHHHTTEE-EEEEEEEGGGTT--SS-EEEEEEEE
T ss_pred hhcCceEEEEeecccc-cH----HH-HHHHhhcc-cEEEEecccCcc--ccceeEEeeec
Confidence 9999998864 35444 22 22 23445676 333433334332 33467776553
No 103
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=86.16 E-value=0.7 Score=41.76 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=37.7
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCC-CCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS-DPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~-dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
+++++++.+|..... . .++||+|+.-.. .... . ...+++.+++.|+|||.++.+
T Consensus 49 ~~~i~~~~~d~~~~~--~-~~~fD~I~~~~~l~~~~---~--~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 49 QGRIRIFYRDSAKDP--F-PDTYDLVFGFEVIHHIK---D--KMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred CcceEEEecccccCC--C-CCCCCEeehHHHHHhCC---C--HHHHHHHHHHHcCCCCEEEEE
Confidence 468999999974431 1 257999995321 1111 1 257999999999999999864
No 104
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.11 E-value=0.91 Score=42.16 Aligned_cols=52 Identities=25% Similarity=0.425 Sum_probs=40.8
Q ss_pred CCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 157 GFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 157 ~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.|+.+++.++++||+.--.+ ..+||.|.+-+.++.-| +.+...|++||-+++
T Consensus 140 ~~~~~~l~ivvGDgr~g~~e--~a~YDaIhvGAaa~~~p----------q~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 140 KLKRGELSIVVGDGRKGYAE--QAPYDAIHVGAAASELP----------QELLDQLKPGGRLLI 191 (237)
T ss_pred hhccCceEEEeCCccccCCc--cCCcceEEEccCccccH----------HHHHHhhccCCeEEE
Confidence 36789999999999986554 36899999987765544 566777888888876
No 105
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=86.11 E-value=1.9 Score=40.37 Aligned_cols=54 Identities=24% Similarity=0.457 Sum_probs=38.1
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
++++++.+|... +. .+++.||+||....-...+. ....++.+.+.|+|||.++.
T Consensus 128 ~~v~~~~~d~~~-l~-~~~~~fD~Vi~~~v~~~~~d----~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 128 TNVEFRLGEIEA-LP-VADNSVDVIISNCVINLSPD----KERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred CCEEEEEcchhh-CC-CCCCceeEEEEcCcccCCCC----HHHHHHHHHHHcCCCcEEEE
Confidence 588999999654 32 22468999998753211110 14689999999999999986
No 106
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=86.08 E-value=1.1 Score=40.32 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=39.7
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++++++.+|...... .+++||+||....-.... -...+++.+++.|+|||.++..
T Consensus 80 ~~~~~~~~d~~~~~~--~~~~fD~vi~~~~l~~~~----~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 80 ENVQFICGDAEKLPL--EDSSFDLIVSNLALQWCD----DLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred CCCeEEecchhhCCC--CCCceeEEEEhhhhhhcc----CHHHHHHHHHHHcCCCcEEEEE
Confidence 478899999876532 246799999875422111 1256999999999999999864
No 107
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=85.66 E-value=1.2 Score=43.61 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=39.5
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECC-CCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDS-SDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~-~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+++++.+|+.++-.. +++||+|+.-. ...... -.+|++.+++.|+|||.++...
T Consensus 180 ~~i~~~~~dae~l~~~--~~~FD~Vi~~~vLeHv~d-----~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 180 STIEYLCTTAEKLADE--GRKFDAVLSLEVIEHVAN-----PAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred cceeEEecCHHHhhhc--cCCCCEEEEhhHHHhcCC-----HHHHHHHHHHHcCCCcEEEEEE
Confidence 5899999998765432 46899999632 111111 1479999999999999999653
No 108
>PRK14968 putative methyltransferase; Provisional
Probab=85.50 E-value=3.4 Score=35.78 Aligned_cols=62 Identities=26% Similarity=0.450 Sum_probs=40.4
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCCCc----------------CCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGPAQ----------------ELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gpa~----------------~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+.++.++.+|..+.+. +.+||+|+.+.+- +..+.. .-....|++.+.+.|+|||.++...
T Consensus 72 ~~~~~~~~~d~~~~~~---~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 72 NNGVEVIRSDLFEPFR---GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CcceEEEecccccccc---ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3348899999776543 3479999987532 211100 0113568999999999999888654
Q ss_pred cc
Q 019882 223 ES 224 (334)
Q Consensus 223 ~s 224 (334)
.+
T Consensus 149 ~~ 150 (188)
T PRK14968 149 SS 150 (188)
T ss_pred cc
Confidence 43
No 109
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=85.47 E-value=1.7 Score=40.88 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=40.4
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCCC-CCC-------------CCcCCC--------CHHHHHHHHHhcCCCcEEEE
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVG-------------PAQELV--------EKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~g-------------pa~~L~--------t~eFy~~v~~~L~~gGilv~ 220 (334)
++++.+|..+++.....++||+||.|.+= |.+ |...|+ -+.+++.+.+.|+|||.++.
T Consensus 135 ~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l 214 (251)
T TIGR03704 135 GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLV 214 (251)
T ss_pred CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 57899999887754222579999999752 211 011122 24777788899999999986
Q ss_pred ec
Q 019882 221 MA 222 (334)
Q Consensus 221 q~ 222 (334)
-.
T Consensus 215 ~~ 216 (251)
T TIGR03704 215 ET 216 (251)
T ss_pred EE
Confidence 43
No 110
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=85.45 E-value=1.5 Score=38.99 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=38.9
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+++++++.+|..+... +.++||+|++...-. ... ....+++.+++.|+|||.++.
T Consensus 87 ~~~i~~~~~d~~~~~~--~~~~~D~i~~~~~~~-~~~---~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 87 PLNIEFIQADAEALPF--EDNSFDAVTIAFGLR-NVT---DIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred CCCceEEecchhcCCC--CCCcEEEEEEeeeeC-Ccc---cHHHHHHHHHHHcCCCcEEEE
Confidence 4689999999887542 235799998743210 011 125789999999999999985
No 111
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=85.20 E-value=2.9 Score=36.60 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=38.6
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCCC----------------cCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGPA----------------QELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gpa----------------~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.+++++.+|..+.+ .++||+|+.+.+- +.... .......|++.+.+.|+|||.++..
T Consensus 66 ~~~~~~~~d~~~~~----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~ 139 (179)
T TIGR00537 66 VGLDVVMTDLFKGV----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI 139 (179)
T ss_pred CceEEEEccccccc----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence 46888999976643 2479999988642 11100 0011367899999999999998763
No 112
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=84.96 E-value=0.99 Score=43.52 Aligned_cols=54 Identities=26% Similarity=0.469 Sum_probs=41.5
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEE-ECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAII-VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvII-vD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+++|+..|=+.+ .++||-|+ +..+..+|.- .-..||+.+++.|+|||.++.|+
T Consensus 122 ~~v~v~l~d~rd~-----~e~fDrIvSvgmfEhvg~~---~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 122 DNVEVRLQDYRDF-----EEPFDRIVSVGMFEHVGKE---NYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred cccEEEecccccc-----ccccceeeehhhHHHhCcc---cHHHHHHHHHhhcCCCceEEEEE
Confidence 5899999995443 24599988 5666666542 23679999999999999999876
No 113
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=84.93 E-value=0.83 Score=41.79 Aligned_cols=49 Identities=33% Similarity=0.649 Sum_probs=34.7
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
+.++.++.+|+++++. ...+|-||++.+. .+.+|...+.+.+++||++.
T Consensus 151 ~~~i~~~~~D~~~~~~---~~~~drvim~lp~--------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 151 ENRIEVINGDAREFLP---EGKFDRVIMNLPE--------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TTTEEEEES-GGG------TT-EEEEEE--TS--------SGGGGHHHHHHHEEEEEEEE
T ss_pred CCeEEEEcCCHHHhcC---ccccCEEEECChH--------HHHHHHHHHHHHhcCCcEEE
Confidence 3689999999999997 2579999998852 23469999999999999874
No 114
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=84.45 E-value=2.7 Score=38.40 Aligned_cols=59 Identities=25% Similarity=0.528 Sum_probs=35.9
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEE----CCC--CCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIV----DSS--DPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIv----D~~--dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
.++.-..|-..= ... ..+||+|+= |+- .|.++-.+| .-|...+.+.|+|||+++.-+.+
T Consensus 119 ~I~f~q~DI~~~-~~~-~~qfdlvlDKGT~DAisLs~d~~~~r~--~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 119 EIRFQQLDITDP-DFL-SGQFDLVLDKGTLDAISLSPDGPVGRL--VVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred ceeEEEeeccCC-ccc-ccceeEEeecCceeeeecCCCCcccce--eeehhhHhhccCCCcEEEEEecC
Confidence 366666664431 112 357887762 322 134443444 45788999999999999975533
No 115
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=84.35 E-value=3.4 Score=37.10 Aligned_cols=57 Identities=9% Similarity=0.024 Sum_probs=38.4
Q ss_pred CCeEEEEchHHHHHhhCC--CCceeEEEECCCCCCCCCcCCCCHHHHHHHHH--hcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVP--RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK--ALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~--~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~--~L~~gGilv~q~ 222 (334)
.+++++.+|+.++++... ...||+|+.|.+=.. .+ ..+-++.+.+ .|+++|+++...
T Consensus 99 ~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~----~~-~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 99 EQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFN----GA-LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred ccEEEEehhHHHHHHHhhccCCCceEEEECcCCCC----Cc-HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 489999999999986531 234899999985321 12 2334444443 688999999744
No 116
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=82.79 E-value=0.95 Score=35.36 Aligned_cols=34 Identities=21% Similarity=0.481 Sum_probs=19.4
Q ss_pred CceeEEEECCC-CCCCCCcCCCCHHHHHHHHHhcCCCcEE
Q 019882 180 GKYDAIIVDSS-DPVGPAQELVEKPFFDTIAKALRPGGVL 218 (334)
Q Consensus 180 ~~yDvIIvD~~-dp~gpa~~L~t~eFy~~v~~~L~~gGil 218 (334)
++||+|+.=.. .-. =--+++++.+++.|+|||++
T Consensus 65 ~~fD~V~~~~vl~~l-----~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHL-----EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS-------S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhh-----hhHHHHHHHHHHHcCCCCCC
Confidence 58999996432 111 12358999999999999986
No 117
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=82.49 E-value=2.9 Score=38.04 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=39.4
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
+++++..|...+.... .++||+||....=...+ -..++++.+.+.|+|||.++..
T Consensus 96 ~~~~~~~~~~~~~~~~-~~~fD~Ii~~~~l~~~~----~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 96 KIDYRQTTAEELAAEH-PGQFDVVTCMEMLEHVP----DPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred ceEEEecCHHHhhhhc-CCCccEEEEhhHhhccC----CHHHHHHHHHHHcCCCcEEEEE
Confidence 6788889988887544 36899999853211111 1246899999999999998864
No 118
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=82.34 E-value=3.8 Score=39.13 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=42.8
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 240 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~ 240 (334)
.++.++.+|... ..+++||+|+.+.... . -.+++..+.+.|+|||.++... .. ......+.+.++
T Consensus 209 ~~~~~~~~~~~~----~~~~~fDlVvan~~~~-----~--l~~ll~~~~~~LkpgG~li~sg---i~-~~~~~~v~~~~~ 273 (288)
T TIGR00406 209 DRLQVKLIYLEQ----PIEGKADVIVANILAE-----V--IKELYPQFSRLVKPGGWLILSG---IL-ETQAQSVCDAYE 273 (288)
T ss_pred cceEEEeccccc----ccCCCceEEEEecCHH-----H--HHHHHHHHHHHcCCCcEEEEEe---Cc-HhHHHHHHHHHH
Confidence 467777766222 2235799999875311 1 1468899999999999998732 22 122345555555
Q ss_pred HhcC
Q 019882 241 ETFK 244 (334)
Q Consensus 241 ~vF~ 244 (334)
+.|.
T Consensus 274 ~~f~ 277 (288)
T TIGR00406 274 QGFT 277 (288)
T ss_pred ccCc
Confidence 5565
No 119
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=82.17 E-value=1.5 Score=44.68 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=39.6
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCC---HHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE---KPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t---~eFy~~v~~~L~~gGilv~ 220 (334)
.++++++.+|+...-...++++||+|++... ..++-. .++++.+++.|+|||+++.
T Consensus 82 ~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~-----l~~l~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 82 YKNVKFMCADVTSPDLNISDGSVDLIFSNWL-----LMYLSDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred CCceEEEEecccccccCCCCCCEEEEehhhh-----HHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3688999999864321223468999998653 112221 5799999999999999976
No 120
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=81.86 E-value=0.36 Score=46.85 Aligned_cols=132 Identities=15% Similarity=0.193 Sum_probs=83.3
Q ss_pred eEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHHhhhhccccC------------------CC
Q 019882 81 AHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSI------------------PS 142 (334)
Q Consensus 81 ~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEmlvh~pl~~h------------------p~ 142 (334)
-..+++..|+..+.+++|++.|-. +.+|.++.+++.....+.+- .|.+.|+-- ..+ .+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk-~y~p~la~g--y~~~~v~l~iGDG~~fl~~~~~~ 194 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSK-QYLPTLACG--YEGKKVKLLIGDGFLFLEDLKEN 194 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHH-HHhHHHhcc--cCCCceEEEeccHHHHHHHhccC
Confidence 345778889999999999999998 67899999887755544433 333222111 111 12
Q ss_pred hhh----------------hHHhhCcccccCCCCCCeEEEEchHH----HHHhhCCCCceeEEEECCCC-CCCCCcCCCC
Q 019882 143 PKT----------------VSKKYFPELAVGFEDPRVRLHIGDAV----EFLRQVPRGKYDAIIVDSSD-PVGPAQELVE 201 (334)
Q Consensus 143 Pkr----------------vak~~fp~l~~~~~dpRv~viv~Dg~----~fL~~~~~~~yDvIIvD~~d-p~gpa~~L~t 201 (334)
|+. .-+.||..+..+++...+.+..+|.. .|+++. .+||-.|-|+++ |+...+ |
T Consensus 195 ~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~--r~~~~~~f~~t~ya~ttvP---T 269 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEG--RSFCYVIFDLTAYAITTVP---T 269 (337)
T ss_pred CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHH--HHhHHHhcCccceeeecCC---C
Confidence 222 23456666667788889999999885 445543 467777777765 432211 3
Q ss_pred HHH----HHHHHHhcCCCcEEEEec
Q 019882 202 KPF----FDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 202 ~eF----y~~v~~~L~~gGilv~q~ 222 (334)
.+| |..+.. |+|+|=+-++.
T Consensus 270 ypsg~igf~l~s~-~~~~~~~~~p~ 293 (337)
T KOG1562|consen 270 YPSGRIGFMLCSK-LKPDGKYKTPG 293 (337)
T ss_pred CccceEEEEEecc-cCCCCCccCCC
Confidence 333 234444 88999888754
No 121
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=81.78 E-value=1.9 Score=40.17 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=38.9
Q ss_pred CCCeE-EEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVR-LHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~-viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.+.+. .+++||..-. +.++.+||+|+.-.-= -..---.+-.+.+++.|+|||+++..
T Consensus 124 ~~~~~~fvva~ge~l~-~l~d~s~DtVV~TlvL----CSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 124 PLQVERFVVADGENLP-QLADGSYDTVVCTLVL----CSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred CcceEEEEeechhcCc-ccccCCeeeEEEEEEE----eccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 34666 8899988754 3457899999865321 00011145789999999999999863
No 122
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=81.03 E-value=2.1 Score=44.21 Aligned_cols=53 Identities=32% Similarity=0.553 Sum_probs=42.8
Q ss_pred CCCeEEEEchHHHHHhhCC--CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVP--RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~--~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+..|+.+..||..-+-+.+ .+.||||=+|.+.-.. .|.+...+++++||++++
T Consensus 160 ~~ive~~~~DA~~lM~~~~~~~~~FDvIDLDPyGs~s--------~FLDsAvqav~~gGLL~v 214 (525)
T KOG1253|consen 160 EDIVEPHHSDANVLMYEHPMVAKFFDVIDLDPYGSPS--------PFLDSAVQAVRDGGLLCV 214 (525)
T ss_pred hhhcccccchHHHHHHhccccccccceEecCCCCCcc--------HHHHHHHHHhhcCCEEEE
Confidence 5688899999998776653 3689999998774222 499999999999999985
No 123
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=80.66 E-value=19 Score=35.65 Aligned_cols=96 Identities=21% Similarity=0.277 Sum_probs=61.5
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhh--hHHHHHHH
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHT--HLIEDMIS 237 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~--~~~~~i~~ 237 (334)
..++..+.+|+++++.+. ..+|-||+-.+. .+.+|+....+.|+++|++-...-.+.... ...+.+.+
T Consensus 237 ~~~v~~i~gD~rev~~~~--~~aDrIim~~p~--------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~ 306 (341)
T COG2520 237 EGRVEPILGDAREVAPEL--GVADRIIMGLPK--------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKS 306 (341)
T ss_pred cceeeEEeccHHHhhhcc--ccCCEEEeCCCC--------cchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHH
Confidence 356999999999999875 469999997753 456899999999999999986433332211 12233333
Q ss_pred HHHHh-cCCceeEEEEEeeecCCCcEEEEE
Q 019882 238 ICRET-FKGSVHYAWASVPTYPSGIIGFLI 266 (334)
Q Consensus 238 tl~~v-F~~~v~~~~~~vPsyp~g~w~f~l 266 (334)
...+. .. .....+-.|-+|..+.|-+.+
T Consensus 307 ~~~~~~~~-~~v~~~r~VksysP~v~hv~v 335 (341)
T COG2520 307 AARKGGYK-VEVLKVRRVKSYSPGVYHVVV 335 (341)
T ss_pred HHhhccCc-ceEEEEEEecccCCCeeEEEE
Confidence 33222 11 222334567788777765543
No 124
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=80.63 E-value=3 Score=37.48 Aligned_cols=55 Identities=24% Similarity=0.322 Sum_probs=38.5
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+++++++.+|...... ..+.||+|+....-...+ -..++++.+.+.|++||+++.
T Consensus 102 ~~~~~~~~~d~~~~~~--~~~~~D~I~~~~~l~~~~----~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 102 SGNVEFVQGDAEALPF--PDNSFDAVTIAFGLRNVP----DIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred ccCeEEEecccccCCC--CCCCccEEEEecccccCC----CHHHHHHHHHHhccCCcEEEE
Confidence 4689999999876432 235799998753211111 135789999999999998875
No 125
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=80.52 E-value=3.3 Score=38.47 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=37.5
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
..+++++.+|..+.. ...+|+|++-..-..-+.. --..+++.+++.|+|||+++..
T Consensus 108 ~~~v~~~~~d~~~~~----~~~~D~vv~~~~l~~l~~~--~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 108 PTPVDVIEGDIRDIA----IENASMVVLNFTLQFLEPS--ERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred CCCeEEEeCChhhCC----CCCCCEEehhhHHHhCCHH--HHHHHHHHHHHhcCCCCEEEEE
Confidence 358999999976542 2359998864321110100 1257999999999999999874
No 126
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=80.31 E-value=2.5 Score=43.05 Aligned_cols=55 Identities=20% Similarity=0.333 Sum_probs=38.5
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCC-CCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS-DPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~-dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
..+++++.+|..... .++++||+|+.-.. .... -...+++.+++.|+|||.++..
T Consensus 313 ~~~v~~~~~d~~~~~--~~~~~fD~I~s~~~l~h~~-----d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 313 KCSVEFEVADCTKKT--YPDNSFDVIYSRDTILHIQ-----DKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred CCceEEEEcCcccCC--CCCCCEEEEEECCcccccC-----CHHHHHHHHHHHcCCCeEEEEE
Confidence 357899999976532 23457999998532 1111 1247999999999999999863
No 127
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=79.98 E-value=2.5 Score=38.79 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=42.7
Q ss_pred hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 146 VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 146 vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.|++.+.... .+.+++++.+|...+- ...+|+|++-..-..-+.. --..+++.++++|+|||.++..
T Consensus 94 ~a~~~~~~~~---~~~~v~~~~~d~~~~~----~~~~d~v~~~~~l~~~~~~--~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 94 RCRQHIAAYH---SEIPVEILCNDIRHVE----IKNASMVILNFTLQFLPPE--DRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred HHHHHHHhcC---CCCCeEEEECChhhCC----CCCCCEEeeecchhhCCHH--HHHHHHHHHHHhcCCCeEEEEe
Confidence 3555543321 2458999999987652 2358988765432211110 0257999999999999999874
No 128
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=79.50 E-value=0.97 Score=42.12 Aligned_cols=55 Identities=22% Similarity=0.374 Sum_probs=34.8
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.+++++.+||-+ |. .++++||+|.+=.-=..- +. -...++.++|.|+|||.++..
T Consensus 98 ~~i~~v~~da~~-lp-~~d~sfD~v~~~fglrn~-~d---~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 98 QNIEFVQGDAED-LP-FPDNSFDAVTCSFGLRNF-PD---RERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp -SEEEEE-BTTB----S-TT-EEEEEEES-GGG--SS---HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeeEEEcCHHH-hc-CCCCceeEEEHHhhHHhh-CC---HHHHHHHHHHHcCCCeEEEEe
Confidence 399999999866 32 235789999964310000 11 246899999999999998863
No 129
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=79.33 E-value=3.5 Score=41.21 Aligned_cols=53 Identities=23% Similarity=0.565 Sum_probs=36.1
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEE-CCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIV-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIv-D~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+++..+|.... +++||+|+. ......+.. .-..+++.+.+.|+|||.++.+.
T Consensus 214 ~v~~~~~D~~~l-----~~~fD~Ivs~~~~ehvg~~---~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 214 PVEIRLQDYRDL-----NGQFDRIVSVGMFEHVGPK---NYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred eEEEEECchhhc-----CCCCCEEEEeCchhhCChH---HHHHHHHHHHHHcCCCcEEEEEE
Confidence 488888897543 257999974 222222110 11479999999999999999864
No 130
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=79.19 E-value=2.5 Score=41.47 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=36.3
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.++.++.+|+.+.+... ..||+||++..-+. ....+.+.|+|||.++...
T Consensus 131 ~nV~~i~gD~~~~~~~~--~~fD~Ii~~~g~~~----------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 131 ENVIFVCGDGYYGVPEF--APYDVIFVTVGVDE----------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CcEEEEeCChhhccccc--CCccEEEECCchHH----------hHHHHHHhcCCCCEEEEEe
Confidence 47999999998876543 46999999853221 2234677899999988743
No 131
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=78.35 E-value=4.5 Score=39.43 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=37.6
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCC-CHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELV-EKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~-t~eFy~~v~~~L~~gGilv~q 221 (334)
+++++++..|.... .. .++||+|+.=.. ..+.. -..+++.+++.|+|||.++..
T Consensus 171 ~~~i~~~~~d~e~l-p~--~~~FD~V~s~~v-----l~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 171 DQRAHLLPLGIEQL-PA--LKAFDTVFSMGV-----LYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CCCeEEEeCCHHHC-CC--cCCcCEEEECCh-----hhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 56899998886543 22 367999996211 11111 247899999999999999863
No 132
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=77.72 E-value=4.8 Score=40.28 Aligned_cols=51 Identities=27% Similarity=0.534 Sum_probs=41.0
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
....++..||-.+|.+.. ..||+|=+|.+. .|. +|.+...+.++.+|++++
T Consensus 102 ~~~~v~n~DAN~lm~~~~-~~fd~IDiDPFG---SPa-----PFlDaA~~s~~~~G~l~v 152 (380)
T COG1867 102 EDAEVINKDANALLHELH-RAFDVIDIDPFG---SPA-----PFLDAALRSVRRGGLLCV 152 (380)
T ss_pred ccceeecchHHHHHHhcC-CCccEEecCCCC---CCc-----hHHHHHHHHhhcCCEEEE
Confidence 355666699999998864 689999888764 332 499999999999999985
No 133
>PRK08317 hypothetical protein; Provisional
Probab=77.44 E-value=3.5 Score=36.73 Aligned_cols=56 Identities=30% Similarity=0.425 Sum_probs=38.3
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.++++++.+|....- ..+++||+|+....=..-+ -...+++.+.+.|+|||.++..
T Consensus 68 ~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 68 GPNVEFVRGDADGLP--FPDGSFDAVRSDRVLQHLE----DPARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred CCceEEEecccccCC--CCCCCceEEEEechhhccC----CHHHHHHHHHHHhcCCcEEEEE
Confidence 468889988875532 1246899999864211100 1256899999999999998753
No 134
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=77.33 E-value=5.6 Score=36.68 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=36.2
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.+++.+|+... . .++++||+|+....-...+ --.+++..+.+.|+|||+++..
T Consensus 87 ~~~~~~d~~~~-~-~~~~~fD~V~s~~~l~~~~----d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 87 DHYLAGDIESL-P-LATATFDLAWSNLAVQWCG----NLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred CCEEEcCcccC-c-CCCCcEEEEEECchhhhcC----CHHHHHHHHHHHcCCCeEEEEE
Confidence 45678887553 2 2346899999865422211 1257899999999999999863
No 135
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=77.06 E-value=6.5 Score=40.85 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=38.7
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCC-CC-------------CCCcCCC----CHHH----HHHHHHhcCCCcE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PV-------------GPAQELV----EKPF----FDTIAKALRPGGV 217 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~-------------gpa~~L~----t~eF----y~~v~~~L~~gGi 217 (334)
+.+++++.+|..+.+. +++||+||.+.+= +. .|...|+ ..+| .+.+.+.|+|||.
T Consensus 188 ~~~v~~~~~D~~~~~~---~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~ 264 (506)
T PRK01544 188 TDRIQIIHSNWFENIE---KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGK 264 (506)
T ss_pred ccceeeeecchhhhCc---CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCE
Confidence 3589999999877653 3579999997531 10 0111233 2344 4566789999999
Q ss_pred EEEe
Q 019882 218 LCNM 221 (334)
Q Consensus 218 lv~q 221 (334)
++.-
T Consensus 265 l~lE 268 (506)
T PRK01544 265 IILE 268 (506)
T ss_pred EEEE
Confidence 9873
No 136
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=76.77 E-value=6.4 Score=38.46 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=36.6
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCC-HHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE-KPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t-~eFy~~v~~~L~~gGilv~q 221 (334)
++++.+...|..+ +.. ...||+|+.=.. ..++-+ .++++.+++.|+|||.++..
T Consensus 170 ~~~v~~~~~~ie~-lp~--~~~FD~V~s~gv-----L~H~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 170 DKRAILEPLGIEQ-LHE--LYAFDTVFSMGV-----LYHRKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CCCeEEEECCHHH-CCC--CCCcCEEEEcch-----hhccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 5688888777543 322 247999997432 111111 47999999999999999864
No 137
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=76.69 E-value=1.4 Score=45.02 Aligned_cols=56 Identities=23% Similarity=0.384 Sum_probs=39.6
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+.+|+|+.+|.+++= . .++.|+||...-.-.+.- + .+.|......+-|+|||+++=
T Consensus 240 ~~~V~vi~~d~r~v~--l-pekvDIIVSElLGsfg~n-E-l~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 240 GDKVTVIHGDMREVE--L-PEKVDIIVSELLGSFGDN-E-LSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp TTTEEEEES-TTTSC--H-SS-EEEEEE---BTTBTT-T-SHHHHHHHGGGGEEEEEEEES
T ss_pred CCeEEEEeCcccCCC--C-CCceeEEEEeccCCcccc-c-cCHHHHHHHHhhcCCCCEEeC
Confidence 468999999988863 2 358999999887544432 2 557889999999999999984
No 138
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=76.56 E-value=6.3 Score=37.09 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=38.6
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++.+.+||-+ |. -++++||+|.+.-.=..-+ --...++.++|.|+|||.+++-
T Consensus 103 i~fv~~dAe~-LP-f~D~sFD~vt~~fglrnv~----d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 103 VEFVVGDAEN-LP-FPDNSFDAVTISFGLRNVT----DIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred eEEEEechhh-CC-CCCCccCEEEeeehhhcCC----CHHHHHHHHHHhhcCCeEEEEE
Confidence 9999999765 54 4578999999864321111 1145889999999999988863
No 139
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=76.47 E-value=4 Score=40.96 Aligned_cols=72 Identities=28% Similarity=0.505 Sum_probs=51.8
Q ss_pred hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEE-ECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 146 VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII-VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 146 vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvII-vD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+-++.|..+.... .||++|.++-.++|++.+++++|..+ +|..|=..+ ..+ .+-++.+.+.++|||.++-.+
T Consensus 262 L~~e~f~~lr~~~--drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~--~~~-~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 262 LRPENFEALRARL--DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDP--EQL-NEEWQELARTARPGARVLWRS 334 (380)
T ss_pred hcHhHHHHHhcCC--CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCH--HHH-HHHHHHHHHHhCCCCEEEEee
Confidence 3344555554334 79999999999999987678999755 688763222 212 456788999999999999644
No 140
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=76.24 E-value=7 Score=39.84 Aligned_cols=59 Identities=24% Similarity=0.357 Sum_probs=36.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCC------------CCcCCCC--------HHHHHHHHHhcCCCcEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVG------------PAQELVE--------KPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~g------------pa~~L~t--------~eFy~~v~~~L~~gGilv 219 (334)
.+++++.+|..+..... .++||+||.+.+- |.+ |...|+. +.+.+.+.+.|+|||.++
T Consensus 300 ~rV~fi~gDl~e~~l~~-~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 300 ARVEFAHGSWFDTDMPS-EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred CcEEEEEcchhcccccc-CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 38999999986642212 2479999998742 111 1111221 244445567999999988
Q ss_pred E
Q 019882 220 N 220 (334)
Q Consensus 220 ~ 220 (334)
.
T Consensus 379 l 379 (423)
T PRK14966 379 L 379 (423)
T ss_pred E
Confidence 6
No 141
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=76.23 E-value=4.8 Score=36.12 Aligned_cols=54 Identities=17% Similarity=0.331 Sum_probs=39.4
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCC-CCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSS-DPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~-dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++++..+|+.++.... .++||+|++... .-.. -...+++.+.+.|++||.++..
T Consensus 94 ~~~~~~~d~~~~~~~~-~~~~D~i~~~~~l~~~~-----~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 94 KIEYRCTSVEDLAEKG-AKSFDVVTCMEVLEHVP-----DPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred ceEEEeCCHHHhhcCC-CCCccEEEehhHHHhCC-----CHHHHHHHHHHhcCCCcEEEEE
Confidence 6889999998887654 368999997531 1111 1246899999999999998753
No 142
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=76.19 E-value=5.6 Score=39.32 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=37.2
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.++++++.+|+.+. . .+++.||+||.-..=...+. ....++.+++.|+|||.++.
T Consensus 159 ~~~i~~i~gD~e~l-p-~~~~sFDvVIs~~~L~~~~d----~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 159 LKECKIIEGDAEDL-P-FPTDYADRYVSAGSIEYWPD----PQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred ccCCeEEeccHHhC-C-CCCCceeEEEEcChhhhCCC----HHHHHHHHHHhcCCCcEEEE
Confidence 35788999998653 2 12467999998432111111 13589999999999999875
No 143
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=75.47 E-value=5.7 Score=35.86 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=46.6
Q ss_pred CCeEEEEchHHH---HHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchh
Q 019882 161 PRVRLHIGDAVE---FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMW 226 (334)
Q Consensus 161 pRv~viv~Dg~~---fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~ 226 (334)
|-++++.+||+. +|.+.++..||.||.-.+=-.-|. --+.+..+.+..+|..||.+++-..+|.
T Consensus 94 p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~--~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 94 PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPM--HRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcH--HHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 567799999963 677777778999998775322221 1345788999999999999997554444
No 144
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=75.08 E-value=6.9 Score=36.96 Aligned_cols=53 Identities=19% Similarity=0.429 Sum_probs=32.5
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEE-CCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIV-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIv-D~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++......-+.. +. +++||||++ +.-..+..+ ..|.+.|.+.+||||++..-.
T Consensus 108 i~y~~~~~edl~-~~-~~~FDvV~cmEVlEHv~dp-----~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 108 IDYRQATVEDLA-SA-GGQFDVVTCMEVLEHVPDP-----ESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred ccchhhhHHHHH-hc-CCCccEEEEhhHHHccCCH-----HHHHHHHHHHcCCCcEEEEec
Confidence 334444444433 33 368999996 222211111 349999999999999998743
No 145
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=74.74 E-value=6.4 Score=35.28 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=34.8
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
++++++..|...+ .. +++||+|+.=..-..-+. --...+++.+++.|+|||.++
T Consensus 78 ~~v~~~~~d~~~~--~~-~~~fD~I~~~~~~~~~~~--~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 78 DNLHTAVVDLNNL--TF-DGEYDFILSTVVLMFLEA--KTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred CcceEEecChhhC--Cc-CCCcCEEEEecchhhCCH--HHHHHHHHHHHHHcCCCcEEE
Confidence 3588888997654 12 357999986332110000 012579999999999999854
No 146
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=73.92 E-value=5.9 Score=36.91 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=42.4
Q ss_pred ceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHh-cCCceeEEEEEeeecCC
Q 019882 181 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET-FKGSVHYAWASVPTYPS 259 (334)
Q Consensus 181 ~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~v-F~~~v~~~~~~vPsyp~ 259 (334)
+||+|+.+..... -..+++.+.+.|+|||+++...-. ......+.+.+.+. |. .+. +-. .
T Consensus 179 ~fD~Vvani~~~~-------~~~l~~~~~~~LkpgG~lilsgi~----~~~~~~v~~~l~~~Gf~-~~~-----~~~--~ 239 (250)
T PRK00517 179 KADVIVANILANP-------LLELAPDLARLLKPGGRLILSGIL----EEQADEVLEAYEEAGFT-LDE-----VLE--R 239 (250)
T ss_pred CcCEEEEcCcHHH-------HHHHHHHHHHhcCCCcEEEEEECc----HhhHHHHHHHHHHCCCE-EEE-----EEE--e
Confidence 6999998653211 146788999999999999984311 11234555566554 54 222 222 2
Q ss_pred CcEEEEEeec
Q 019882 260 GIIGFLICST 269 (334)
Q Consensus 260 g~w~f~laSk 269 (334)
+.|..+++.|
T Consensus 240 ~~W~~~~~~~ 249 (250)
T PRK00517 240 GEWVALVGKK 249 (250)
T ss_pred CCEEEEEEEe
Confidence 6687666654
No 147
>PRK06922 hypothetical protein; Provisional
Probab=73.91 E-value=5.3 Score=42.92 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=40.0
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCC---C-C-Cc----CCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV---G-P-AQ----ELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~---g-p-a~----~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+++++.+|+...-...++++||+|+.-..-.. . + .. .-.-..+++.+.++|+|||.++...
T Consensus 467 ~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 467 RSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred CCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 578889999887321123468999986431100 0 0 00 0123678999999999999999854
No 148
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=73.87 E-value=16 Score=36.79 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=39.0
Q ss_pred CCeEEEEchHHHHHhhC--CCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQV--PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~--~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.+++++.+|+.+++.+. .+..||+||+|.+.. | ...++.+.+. .|++++++.+-
T Consensus 340 ~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~-G-----~~~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 340 ANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRK-G-----CAAEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred CceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCC-C-----CCHHHHHHHH-hcCCCEEEEEc
Confidence 47999999999987642 134799999998742 2 1256777766 48999987653
No 149
>PRK10742 putative methyltransferase; Provisional
Probab=73.58 E-value=4.2 Score=38.61 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=27.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCC
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV 193 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~ 193 (334)
.|++++.+|+.+||++.+ +.||||.+|..=|.
T Consensus 145 ~ri~l~~~da~~~L~~~~-~~fDVVYlDPMfp~ 176 (250)
T PRK10742 145 ERLQLIHASSLTALTDIT-PRPQVVYLDPMFPH 176 (250)
T ss_pred ceEEEEeCcHHHHHhhCC-CCCcEEEECCCCCC
Confidence 589999999999999874 57999999986444
No 150
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=71.85 E-value=15 Score=36.46 Aligned_cols=53 Identities=15% Similarity=0.291 Sum_probs=39.3
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++++.+|+.+++... ..+||+||+|.+.. | ...++.+.+. .++|++++.+-+
T Consensus 282 ~~~~~~~d~~~~~~~~-~~~~D~vi~DPPr~-G-----~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 282 NLSFAALDSAKFATAQ-MSAPELVLVNPPRR-G-----IGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred cEEEEECCHHHHHHhc-CCCCCEEEECCCCC-C-----CcHHHHHHHH-hcCCCeEEEEEe
Confidence 7999999999998653 24699999997632 2 2356666665 589999888755
No 151
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=70.71 E-value=18 Score=34.92 Aligned_cols=54 Identities=19% Similarity=0.317 Sum_probs=36.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+.+++... .++||+||+|.+.. | ...+..+.+ ..+++++|+.+-+
T Consensus 221 ~~v~~~~~D~~~~~~~~-~~~~D~Vv~dPPr~-G-----~~~~~~~~l-~~~~~~~ivyvsc 274 (315)
T PRK03522 221 TNVQFQALDSTQFATAQ-GEVPDLVLVNPPRR-G-----IGKELCDYL-SQMAPRFILYSSC 274 (315)
T ss_pred CceEEEEcCHHHHHHhc-CCCCeEEEECCCCC-C-----ccHHHHHHH-HHcCCCeEEEEEC
Confidence 47999999999988643 35799999996521 2 123344444 3477888777654
No 152
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=69.33 E-value=2.4 Score=40.69 Aligned_cols=58 Identities=22% Similarity=0.470 Sum_probs=41.1
Q ss_pred CCCeEEEEchHHHHHhhC-CCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQV-PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~-~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
..++.+..||-.++-... ..++||+|++=-+ ...+..+ .++++.+.+.|+|||+.++-
T Consensus 143 ~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FF--IDTA~Ni--~~Yi~tI~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 143 PSNLSMCAGDFLEVYGPDENKGSFDVVVTCFF--IDTAENI--IEYIETIEHLLKPGGYWINF 201 (270)
T ss_pred CCceeEecCccEEecCCcccCCcccEEEEEEE--eechHHH--HHHHHHHHHHhccCCEEEec
Confidence 568999999987765432 1368999986433 1112333 27999999999999998873
No 153
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.46 E-value=7.5 Score=39.40 Aligned_cols=47 Identities=26% Similarity=0.468 Sum_probs=32.5
Q ss_pred HhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 174 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 174 L~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++.+.+.||+||+|.+...-.-..||+ =...|+++++|+=|+.+.-
T Consensus 176 v~~fKke~fdvIIvDTSGRh~qe~sLfe--EM~~v~~ai~Pd~vi~VmD 222 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTSGRHKQEASLFE--EMKQVSKAIKPDEIIFVMD 222 (483)
T ss_pred HHHHHhcCCcEEEEeCCCchhhhHHHHH--HHHHHHhhcCCCeEEEEEe
Confidence 3333456799999999865444445552 3467889999998877643
No 154
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=67.77 E-value=3.9 Score=37.49 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=35.5
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
..+++++++|..++-... ..+||.|+ |..-=...+..+ -..+++.+.+.|+|||+++
T Consensus 93 ~~~v~~~~~D~~~~~~~~-~~~fD~i~-D~~~~~~l~~~~-R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 93 AGNIEIFCGDFFALTAAD-LGPVDAVY-DRAALIALPEEM-RQRYAAHLLALLPPGARQL 149 (213)
T ss_pred cCceEEEEccCCCCCccc-CCCcCEEE-echhhccCCHHH-HHHHHHHHHHHcCCCCeEE
Confidence 468999999988764322 24699775 322101111111 2458999999999999643
No 155
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=67.74 E-value=4.4 Score=33.83 Aligned_cols=39 Identities=26% Similarity=0.552 Sum_probs=28.4
Q ss_pred CCceeEEEECCC-CCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 179 RGKYDAIIVDSS-DPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 179 ~~~yDvIIvD~~-dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++||+|+.=.. .-.. --.++++.+++.|+|||+++...
T Consensus 76 ~~~fD~i~~~~~l~~~~-----d~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLP-----DPEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp SSSEEEEEEESSGGGSS-----HHHHHHHHHHHCEEEEEEEEEEE
T ss_pred ccchhhHhhHHHHhhcc-----cHHHHHHHHHHhcCCCCEEEEEE
Confidence 468999997432 1111 13579999999999999999754
No 156
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=66.90 E-value=28 Score=32.09 Aligned_cols=83 Identities=20% Similarity=0.327 Sum_probs=47.6
Q ss_pred CCeEEEEchH-----HHHHhh-CCCCceeEEEECCCCCCCC---CcCCCCH----HHHHHHHHhcCCCcEEEEeccchhh
Q 019882 161 PRVRLHIGDA-----VEFLRQ-VPRGKYDAIIVDSSDPVGP---AQELVEK----PFFDTIAKALRPGGVLCNMAESMWL 227 (334)
Q Consensus 161 pRv~viv~Dg-----~~fL~~-~~~~~yDvIIvD~~dp~gp---a~~L~t~----eFy~~v~~~L~~gGilv~q~~sp~~ 227 (334)
|.|..+.+|- ++=|.. ......|+|+.|.....+- ..++.+. --.+.+...|+++|.+++-. +
T Consensus 85 ~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~----f 160 (205)
T COG0293 85 PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV----F 160 (205)
T ss_pred CCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE----E
Confidence 4577766664 233332 2234479999998754321 1111111 12234567899999999621 2
Q ss_pred hhhHHHHHHHHHHHhcCCcee
Q 019882 228 HTHLIEDMISICRETFKGSVH 248 (334)
Q Consensus 228 ~~~~~~~i~~tl~~vF~~~v~ 248 (334)
+......+++.+++.|. .|.
T Consensus 161 qg~~~~~~l~~~~~~F~-~v~ 180 (205)
T COG0293 161 QGEDFEDLLKALRRLFR-KVK 180 (205)
T ss_pred eCCCHHHHHHHHHHhhc-eeE
Confidence 22335677888888998 544
No 157
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=66.53 E-value=8.3 Score=33.47 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=36.9
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHh--cCCCcEEEEeccc
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA--LRPGGVLCNMAES 224 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~--L~~gGilv~q~~s 224 (334)
.++++++.+|+.++... +..||+||.+.+ . ++.+ +.+..+.+. +.++|+++.|.+.
T Consensus 58 ~~~v~ii~~D~~~~~~~--~~~~d~vi~n~P--y----~~~~-~~i~~~l~~~~~~~~~~l~~q~e~ 115 (169)
T smart00650 58 ADNLTVIHGDALKFDLP--KLQPYKVVGNLP--Y----NIST-PILFKLLEEPPAFRDAVLMVQKEV 115 (169)
T ss_pred CCCEEEEECchhcCCcc--ccCCCEEEECCC--c----ccHH-HHHHHHHhcCCCcceEEEEEEHHH
Confidence 46999999999987532 246999999763 2 2223 344444332 4488999988753
No 158
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=65.69 E-value=14 Score=33.21 Aligned_cols=54 Identities=22% Similarity=0.385 Sum_probs=41.1
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccch
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM 225 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp 225 (334)
++++++.+++-+ ... ..+||+|+.=+..|.. .+++.+...|++||.++..-+..
T Consensus 98 ~nv~v~~~R~E~--~~~-~~~fd~v~aRAv~~l~--------~l~~~~~~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 98 SNVEVINGRAEE--PEY-RESFDVVTARAVAPLD--------KLLELARPLLKPGGRLLAYKGPD 151 (184)
T ss_dssp SSEEEEES-HHH--TTT-TT-EEEEEEESSSSHH--------HHHHHHGGGEEEEEEEEEEESS-
T ss_pred CCEEEEEeeecc--ccc-CCCccEEEeehhcCHH--------HHHHHHHHhcCCCCEEEEEcCCC
Confidence 579999999877 333 4689999998875542 58899999999999999877643
No 159
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=64.74 E-value=19 Score=34.03 Aligned_cols=75 Identities=23% Similarity=0.358 Sum_probs=44.3
Q ss_pred CCCCeEEEEchHHHHHhhC--CCCceeEEEECCC-CCCCCCcCCCCHHHHH---HHHHhcC--CCcEEEEeccchhhhhh
Q 019882 159 EDPRVRLHIGDAVEFLRQV--PRGKYDAIIVDSS-DPVGPAQELVEKPFFD---TIAKALR--PGGVLCNMAESMWLHTH 230 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~~--~~~~yDvIIvD~~-dp~gpa~~L~t~eFy~---~v~~~L~--~gGilv~q~~sp~~~~~ 230 (334)
.++|++|+..||++-|+.. +..+-=+|++|.+ .-. .||-+ .+.++++ +.|+++.|- |.....
T Consensus 101 ~~~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~--------~dy~~v~~~l~~a~kR~~~G~~~iWY--Pi~~~~ 170 (245)
T PF04378_consen 101 RDRRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQK--------DDYQRVVDALAKALKRWPTGVYAIWY--PIKDRE 170 (245)
T ss_dssp TTS-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----ST--------THHHHHHHHHHHHHHH-TTSEEEEEE--EESSHH
T ss_pred cCCccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCc--------hHHHHHHHHHHHHHHhcCCcEEEEEe--ecccHH
Confidence 4689999999999988764 2356789999963 111 13322 2333333 789999985 555556
Q ss_pred HHHHHHHHHHHhc
Q 019882 231 LIEDMISICRETF 243 (334)
Q Consensus 231 ~~~~i~~tl~~vF 243 (334)
..+.+.+.+++.-
T Consensus 171 ~~~~~~~~l~~~~ 183 (245)
T PF04378_consen 171 RVDRFLRALKALG 183 (245)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcC
Confidence 6788888888763
No 160
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=64.72 E-value=6.8 Score=37.02 Aligned_cols=55 Identities=25% Similarity=0.390 Sum_probs=35.8
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEEC-CCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVD-SSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD-~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.+|+....|..+.- .+.++||+|++- ..--..++ -....++.++++|+|||+++.
T Consensus 185 ~~V~F~~~dl~~~~--~~~~~fD~I~crnvl~yf~~~---~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 185 ERVRFAKHNLLAES--PPLGDFDLIFCRNVLIYFDEP---TQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred CcCEEeeccCCCCC--CccCCCCEEEechhHHhCCHH---HHHHHHHHHHHHhCCCeEEEE
Confidence 47888888876521 124679999972 11000000 123689999999999999997
No 161
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=64.61 E-value=10 Score=35.56 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=43.8
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
=|+++...+|.+.|=. +...|+|+..+.=.+-| .| .+-|..+...|+|||++++|...
T Consensus 74 lp~~~f~~aDl~~w~p---~~~~dllfaNAvlqWlp-dH---~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 74 LPDATFEEADLRTWKP---EQPTDLLFANAVLQWLP-DH---PELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred CCCCceecccHhhcCC---CCccchhhhhhhhhhcc-cc---HHHHHHHHHhhCCCceEEEECCC
Confidence 4789999999999843 45799999887543332 11 35778899999999999998743
No 162
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=63.66 E-value=29 Score=33.22 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=53.6
Q ss_pred CCCCeEEEEchHHHHHhhC--CCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcC------CCcEEEEeccchhhhhh
Q 019882 159 EDPRVRLHIGDAVEFLRQV--PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALR------PGGVLCNMAESMWLHTH 230 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~~--~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~------~gGilv~q~~sp~~~~~ 230 (334)
.|.|++|.-+||+.-++.. +.++--+|++|.+ .. + ++=|+.+.+.|+ ++|+++.|- |..+.+
T Consensus 132 ~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPP--fE----~--~~eY~rvv~~l~~~~kRf~~g~yaiWY--Pik~r~ 201 (279)
T COG2961 132 GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPP--FE----L--KDEYQRVVEALAEAYKRFATGTYAIWY--PIKDRR 201 (279)
T ss_pred CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCC--cc----c--ccHHHHHHHHHHHHHHhhcCceEEEEE--eecchH
Confidence 5889999999999998875 3456889999974 11 1 123555554444 689999985 556667
Q ss_pred HHHHHHHHHHHh
Q 019882 231 LIEDMISICRET 242 (334)
Q Consensus 231 ~~~~i~~tl~~v 242 (334)
.++.+++.+++.
T Consensus 202 ~~~~f~~~L~~~ 213 (279)
T COG2961 202 QIRRFLRALEAL 213 (279)
T ss_pred HHHHHHHHHhhc
Confidence 788888888875
No 163
>PLN02672 methionine S-methyltransferase
Probab=63.32 E-value=39 Score=38.58 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=40.8
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCC-CC----C------------------CCcCCCC-----------HHHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PV----G------------------PAQELVE-----------KPFFD 206 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~----g------------------pa~~L~t-----------~eFy~ 206 (334)
.|++++.+|..+.++.. ..+||+||.-.+= |. . |-..|+. +...+
T Consensus 184 ~rV~f~~sDl~~~~~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~ 262 (1082)
T PLN02672 184 DRVEFYESDLLGYCRDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVE 262 (1082)
T ss_pred ccEEEEECchhhhcccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHH
Confidence 48999999999888543 2369999986541 10 0 1123333 44445
Q ss_pred HHHHhcCCCcEEEEecc
Q 019882 207 TIAKALRPGGVLCNMAE 223 (334)
Q Consensus 207 ~v~~~L~~gGilv~q~~ 223 (334)
.+.+.|+|||.++.-.+
T Consensus 263 ~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 263 EGISVIKPMGIMIFNMG 279 (1082)
T ss_pred HHHHhccCCCEEEEEEC
Confidence 56679999999997554
No 164
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.62 E-value=3 Score=39.45 Aligned_cols=55 Identities=29% Similarity=0.509 Sum_probs=39.6
Q ss_pred EEEEchHHHHHhhCCCCceeEEEE-CCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 164 RLHIGDAVEFLRQVPRGKYDAIIV-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 164 ~viv~Dg~~fL~~~~~~~yDvIIv-D~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
.+.++|+..|++...+++||+|.. |..-=.|.. ..+|-.+...|+|||.++..++
T Consensus 171 ~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~L-----e~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 171 TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGAL-----EGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred HHHHHHHHHHhhhccCCcccchhhhhHHHhhcch-----hhHHHHHHHhcCCCceEEEEec
Confidence 467889999998666789999873 332112322 2478899999999999987544
No 165
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=59.70 E-value=8.9 Score=36.45 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=34.4
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
++++...|....- . +++||+|+.-..-..-... --..+++.+++.|+|||+++.
T Consensus 168 ~v~~~~~D~~~~~--~-~~~fD~I~~~~vl~~l~~~--~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 168 NIRTGLYDINSAS--I-QEEYDFILSTVVLMFLNRE--RIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ceEEEEechhccc--c-cCCccEEEEcchhhhCCHH--HHHHHHHHHHHhcCCCcEEEE
Confidence 6788888865532 1 3579999875431100000 124689999999999998543
No 166
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=59.62 E-value=5.3 Score=36.76 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=35.8
Q ss_pred CCCCeEEEEchHHHHHhhCCCCceeEEEECCC--CCCCCCcCCCCHHHHHHHHHhcCCCcE
Q 019882 159 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS--DPVGPAQELVEKPFFDTIAKALRPGGV 217 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~--dp~gpa~~L~t~eFy~~v~~~L~~gGi 217 (334)
...+|+++.+|..++-... ...||+|+ |.. -...+. --..+++.+.+.|+|||+
T Consensus 95 ~~~~v~~~~~D~~~l~~~~-~~~fd~v~-D~~~~~~l~~~---~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 95 QAGEITIYCGDFFALTAAD-LADVDAVY-DRAALIALPEE---MRERYVQQLAALLPAGCR 150 (218)
T ss_pred ccCceEEEECcccCCCccc-CCCeeEEE-ehHhHhhCCHH---HHHHHHHHHHHHcCCCCe
Confidence 4679999999998874332 24789776 321 111111 125689999999999975
No 167
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=59.53 E-value=24 Score=30.74 Aligned_cols=64 Identities=22% Similarity=0.388 Sum_probs=32.9
Q ss_pred CceeEEEECCCCCC-CC-------CcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeE
Q 019882 180 GKYDAIIVDSSDPV-GP-------AQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHY 249 (334)
Q Consensus 180 ~~yDvIIvD~~dp~-gp-------a~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~ 249 (334)
+.+|+|+.|..-.. +. ...|. ..-+..+.+.|++||.+|...-. .... ..++..++..|. .|..
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~-~~~l~~a~~~L~~gG~~v~K~~~---~~~~-~~~~~~l~~~F~-~v~~ 161 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLI-LSQLLLALELLKPGGTFVIKVFK---GPEI-EELIYLLKRCFS-KVKI 161 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHH-HHHHHHHHHHHCTTEEEEEEESS---STTS-HHHHHHHHHHHH-HEEE
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHH-HHHHHHHHhhhcCCCEEEEEecc---CccH-HHHHHHHHhCCe-EEEE
Confidence 58999999984322 21 01111 12233555779999988863311 1122 356667777887 5543
No 168
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=59.52 E-value=14 Score=32.95 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=31.3
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCC-CCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSS-DPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~-dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
++....|...+ .. +++||+|+.-.. .-..+ -...++++.+++.|+|||+++
T Consensus 79 v~~~~~d~~~~--~~-~~~fD~I~~~~~~~~~~~---~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 79 LRTDAYDINAA--AL-NEDYDFIFSTVVFMFLQA---GRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ceeEeccchhc--cc-cCCCCEEEEecccccCCH---HHHHHHHHHHHHHhCCCcEEE
Confidence 66777775432 12 247999986432 10000 012478999999999999844
No 169
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=59.25 E-value=56 Score=32.33 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=35.6
Q ss_pred CeEEEEchHHHHHhhCC--------------CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 162 RVRLHIGDAVEFLRQVP--------------RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~--------------~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++++.+|+.+++++.. ..+||+||+|.+. .| ...+..+.+.+ +++++.+-+
T Consensus 255 ~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~G-----~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 255 NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR-AG-----LDDETLKLVQA---YERILYISC 320 (362)
T ss_pred cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCC-CC-----CcHHHHHHHHc---cCCEEEEEe
Confidence 79999999999986421 1259999999974 23 23445555543 678777654
No 170
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=58.77 E-value=27 Score=35.40 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=37.4
Q ss_pred CCeEEEEchHHHHHhhC--CCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQV--PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~--~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+++++.+|+.+++.+. .+++||+||+|.+.. + + .+..+.+.+ |++++++.+-+
T Consensus 345 ~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~-g----~--~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 345 DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRA-G----A--AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred CceEEEEeChHHhhhhhhhhcCCCCEEEECcCCc-C----h--HHHHHHHHh-cCCCeEEEEEe
Confidence 36999999999887531 235799999998532 1 1 245555555 78999877655
No 171
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=58.53 E-value=11 Score=37.83 Aligned_cols=73 Identities=21% Similarity=0.398 Sum_probs=50.5
Q ss_pred hHHhhCcccccCCCCCCeEEEEchHHHHHhh------------CCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcC
Q 019882 146 VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ------------VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALR 213 (334)
Q Consensus 146 vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~------------~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~ 213 (334)
||.+.-|.+..+|.+-.+.+..+|.-.|-+. . .+.||+||+|--|..-.+ -...-+..++++.+
T Consensus 156 VclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr~plvVaTtHQLlrF-k~aFD~liIDEVDAFP~~---~d~~L~~Av~~ark 231 (441)
T COG4098 156 VCLELYPRLKQAFSNCDIDLLYGDSDSYFRAPLVVATTHQLLRF-KQAFDLLIIDEVDAFPFS---DDQSLQYAVKKARK 231 (441)
T ss_pred chHHHHHHHHHhhccCCeeeEecCCchhccccEEEEehHHHHHH-HhhccEEEEecccccccc---CCHHHHHHHHHhhc
Confidence 7777777777677666777777777666542 1 257999999988743221 12345678899999
Q ss_pred CCcEEEEec
Q 019882 214 PGGVLCNMA 222 (334)
Q Consensus 214 ~gGilv~q~ 222 (334)
++|..+.-+
T Consensus 232 ~~g~~IylT 240 (441)
T COG4098 232 KEGATIYLT 240 (441)
T ss_pred ccCceEEEe
Confidence 999887544
No 172
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=58.13 E-value=8.4 Score=40.42 Aligned_cols=60 Identities=23% Similarity=0.347 Sum_probs=48.1
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
+.||+|+-.|-|.|-. +.++-|+|+..+-...| ..=.+.|....+.+-|+|+||.+=+..
T Consensus 420 ~~~Vtii~~DMR~w~a--p~eq~DI~VSELLGSFG--DNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 420 DNRVTIISSDMRKWNA--PREQADIIVSELLGSFG--DNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred cCeeEEEeccccccCC--chhhccchHHHhhcccc--CccCCHHHHHHHHhhcCCCceEccchh
Confidence 6799999999999973 23689999988764444 344678999999999999999986554
No 173
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=58.05 E-value=3 Score=39.17 Aligned_cols=29 Identities=38% Similarity=0.728 Sum_probs=20.7
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCC
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSS 190 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~ 190 (334)
.|++++.+|+.+||+ .++++||||-.|.-
T Consensus 132 ~ri~l~~~d~~~~L~-~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 132 RRIQLIHGDALEYLR-QPDNSFDVVYFDPM 160 (234)
T ss_dssp HHEEEEES-CCCHCC-CHSS--SEEEE--S
T ss_pred hCCEEEcCCHHHHHh-hcCCCCCEEEECCC
Confidence 499999999999998 44579999999864
No 174
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=57.69 E-value=7.5 Score=37.85 Aligned_cols=71 Identities=23% Similarity=0.328 Sum_probs=45.7
Q ss_pred EEEEchHHHHHhhCCCCceeEEEECCCCCCCC-CcCCCCHHHHHHHHHhcCCCcEEE--EeccchhhhhhHHHHHHHHHH
Q 019882 164 RLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP-AQELVEKPFFDTIAKALRPGGVLC--NMAESMWLHTHLIEDMISICR 240 (334)
Q Consensus 164 ~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp-a~~L~t~eFy~~v~~~L~~gGilv--~q~~sp~~~~~~~~~i~~tl~ 240 (334)
.++..|..+=++ ++||+||+..+=..|- ...-..+++++..+++|++||-+- .|..- .....|+
T Consensus 211 ~v~~s~~~~~v~----~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l---------~y~~~L~ 277 (300)
T COG2813 211 EVWASNLYEPVE----GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHL---------PYEKKLK 277 (300)
T ss_pred EEEEeccccccc----ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC---------ChHHHHH
Confidence 567777544332 3799999987543343 222234599999999999999864 44211 2235678
Q ss_pred HhcCCcee
Q 019882 241 ETFKGSVH 248 (334)
Q Consensus 241 ~vF~~~v~ 248 (334)
++|. .+.
T Consensus 278 ~~Fg-~v~ 284 (300)
T COG2813 278 ELFG-NVE 284 (300)
T ss_pred HhcC-CEE
Confidence 8898 543
No 175
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=57.08 E-value=31 Score=33.38 Aligned_cols=40 Identities=20% Similarity=0.443 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCCcEEE-EeccchhhhhhHHHHHHHHHHHh-cC
Q 019882 202 KPFFDTIAKALRPGGVLC-NMAESMWLHTHLIEDMISICRET-FK 244 (334)
Q Consensus 202 ~eFy~~v~~~L~~gGilv-~q~~sp~~~~~~~~~i~~tl~~v-F~ 244 (334)
.+|+..+.|+|++||++- +-..|-+.+- +...+.+... |.
T Consensus 244 ~df~kEa~RiLk~gG~l~IAEv~SRf~dv---~~f~r~l~~lGF~ 285 (325)
T KOG3045|consen 244 ADFIKEANRILKPGGLLYIAEVKSRFSDV---KGFVRALTKLGFD 285 (325)
T ss_pred HHHHHHHHHHhccCceEEEEehhhhcccH---HHHHHHHHHcCCe
Confidence 479999999999999975 4444555443 3344444432 54
No 176
>PHA03412 putative methyltransferase; Provisional
Probab=55.59 E-value=19 Score=33.95 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=35.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCC----C---cCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGP----A---QELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gp----a---~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
++++++.+|...+. . +.+||+||...+= +... + ..++...|.+.+.+.|++|++ +.
T Consensus 97 ~~~~~~~~D~~~~~--~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 97 PEATWINADALTTE--F-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred cCCEEEEcchhccc--c-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 46889999987643 2 3589999998642 1111 1 125566688888875555554 54
No 177
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=54.82 E-value=43 Score=31.89 Aligned_cols=94 Identities=23% Similarity=0.387 Sum_probs=54.3
Q ss_pred HHHhhCCCCceeEEEECCC-CCCCCCcCCCCHHHH---------HHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHH
Q 019882 172 EFLRQVPRGKYDAIIVDSS-DPVGPAQELVEKPFF---------DTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 241 (334)
Q Consensus 172 ~fL~~~~~~~yDvIIvD~~-dp~gpa~~L~t~eFy---------~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~ 241 (334)
..|+...+++-|+||.|.. |-.|.- .| .||. ......|+|||-+|.- .+..+...-++..++.
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlH-d~--DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK----ifRg~~tslLysql~~ 178 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLH-DL--DEYVQAQLLLAALNIATCVLKPGGSFVAK----IFRGRDTSLLYSQLRK 178 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccc-cH--HHHHHHHHHHHHHHHHhheecCCCeeehh----hhccCchHHHHHHHHH
Confidence 3444444568999999964 333321 00 1232 2345689999999962 2333345566778888
Q ss_pred hcCCceeEEEEEeeec--CCCcEEEEEeecCCCCCCC
Q 019882 242 TFKGSVHYAWASVPTY--PSGIIGFLICSTEGPHVDF 276 (334)
Q Consensus 242 vF~~~v~~~~~~vPsy--p~g~w~f~laSk~~~~~~~ 276 (334)
.|. .|- +.-|.- ++..-.|++|..-.+|..+
T Consensus 179 ff~-kv~---~~KPrsSR~sSiEaFvvC~~~~pp~g~ 211 (294)
T KOG1099|consen 179 FFK-KVT---CAKPRSSRNSSIEAFVVCLGYCPPEGF 211 (294)
T ss_pred Hhh-cee---eecCCccccccceeeeeecccCCccCC
Confidence 898 442 233432 2234589999875455443
No 178
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=54.36 E-value=15 Score=29.36 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=25.6
Q ss_pred CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 179 RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 179 ~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
+..||++|+|+++. |+.+-+..+...++-||+++.-..
T Consensus 9 G~e~~~~i~d~~~g-------~~pnal~a~~gtv~gGGllill~p 46 (92)
T PF08351_consen 9 GQEFDLLIFDAFEG-------FDPNALAALAGTVRGGGLLILLLP 46 (92)
T ss_dssp T--BSSEEEE-SS----------HHHHHHHHTTB-TT-EEEEEES
T ss_pred CCccCEEEEEccCC-------CCHHHHHHHhcceecCeEEEEEcC
Confidence 35699999999864 456788999999999999997553
No 179
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=53.38 E-value=39 Score=32.33 Aligned_cols=83 Identities=23% Similarity=0.324 Sum_probs=51.6
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCC-CCC----Cc-------------CCCCHHHHHHHHHhc----CCCcE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDP-VGP----AQ-------------ELVEKPFFDTIAKAL----RPGGV 217 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp-~gp----a~-------------~L~t~eFy~~v~~~L----~~gGi 217 (334)
-..+.++..|+..+........||.|++|++-- .|. +. .-.+++-++.+.+.| +|||.
T Consensus 135 ~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~ 214 (283)
T PF01189_consen 135 VFNVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGR 214 (283)
T ss_dssp -SSEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEE
T ss_pred CceEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCe
Confidence 357888889999986554334699999998752 221 10 112456677888999 99999
Q ss_pred EEEeccchhhhhhHHHHHHHHHHHhcC
Q 019882 218 LCNMAESMWLHTHLIEDMISICRETFK 244 (334)
Q Consensus 218 lv~q~~sp~~~~~~~~~i~~tl~~vF~ 244 (334)
+|--+-|.. ++.-..+++.+-+.++
T Consensus 215 lvYsTCS~~--~eENE~vV~~fl~~~~ 239 (283)
T PF01189_consen 215 LVYSTCSLS--PEENEEVVEKFLKRHP 239 (283)
T ss_dssp EEEEESHHH--GGGTHHHHHHHHHHST
T ss_pred EEEEeccHH--HHHHHHHHHHHHHhCC
Confidence 996443432 2223344444444455
No 180
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=53.38 E-value=22 Score=33.92 Aligned_cols=56 Identities=18% Similarity=0.097 Sum_probs=34.3
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++|++++.+|.++. .. ..+|+|++-..-..... -.....++.++++|+|||.+++.
T Consensus 198 ~~rv~~~~~d~~~~--~~--~~~D~v~~~~~lh~~~~--~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 198 ADRMRGIAVDIYKE--SY--PEADAVLFCRILYSANE--QLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred cceEEEEecCccCC--CC--CCCCEEEeEhhhhcCCh--HHHHHHHHHHHHhcCCCCEEEEE
Confidence 35788888887642 12 23688775331100000 01135799999999999999864
No 181
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=52.88 E-value=20 Score=34.37 Aligned_cols=57 Identities=23% Similarity=0.183 Sum_probs=33.7
Q ss_pred CeEEEEchHHHHHhhCC---CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 162 RVRLHIGDAVEFLRQVP---RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~---~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
++..+.+|..+.+.-.. .....+++.+++-..-+.. -...|++.+++.|+|||.++.
T Consensus 116 ~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~--e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 116 EVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPE--EAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred eEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHH--HHHHHHHHHHHhcCCCCEEEE
Confidence 35557899765442211 1124455566542221111 124699999999999999985
No 182
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=52.47 E-value=25 Score=33.50 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=48.4
Q ss_pred hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCC-CHHHHHHHHHhcCCCc-EEEEecc
Q 019882 146 VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELV-EKPFFDTIAKALRPGG-VLCNMAE 223 (334)
Q Consensus 146 vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~-t~eFy~~v~~~L~~gG-ilv~q~~ 223 (334)
++++++|..- .+-..++...|....+-. +++-|+|++-- +.|-| -.+||+.+++.|+++| ++++|..
T Consensus 70 ~a~k~~~~~y---~~t~~~ms~~~~v~L~g~--e~SVDlI~~Aq------a~HWFdle~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 70 VAKKHPPVTY---CHTPSTMSSDEMVDLLGG--EESVDLITAAQ------AVHWFDLERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred HhhcCCCccc---ccCCccccccccccccCC--Ccceeeehhhh------hHHhhchHHHHHHHHHHcCCCCCEEEEEEc
Confidence 5677766431 122233333444444422 46799988621 22322 2579999999999877 8888875
Q ss_pred c--hhhhhhHHHHHHHHHHHhcC
Q 019882 224 S--MWLHTHLIEDMISICRETFK 244 (334)
Q Consensus 224 s--p~~~~~~~~~i~~tl~~vF~ 244 (334)
+ ....++....+++...+..|
T Consensus 139 ~dd~v~~pE~dsv~~r~~~~~~p 161 (261)
T KOG3010|consen 139 NDDFVDWPEFDSVMLRLYDSTLP 161 (261)
T ss_pred cCCCcCCHHHHHHHHHHhhccCc
Confidence 4 22233433444444444444
No 183
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=51.66 E-value=11 Score=34.65 Aligned_cols=56 Identities=25% Similarity=0.401 Sum_probs=36.8
Q ss_pred CCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcE
Q 019882 159 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 217 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGi 217 (334)
.+.+|+++.+|-+++=... .++||+|. |-+-=...+. =--..+.+.+++.|+|||.
T Consensus 95 ~~~~i~~~~gDfF~l~~~~-~g~fD~iy-Dr~~l~Alpp-~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 95 QAGRITIYCGDFFELPPED-VGKFDLIY-DRTFLCALPP-EMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp TTSSEEEEES-TTTGGGSC-HHSEEEEE-ECSSTTTS-G-GGHHHHHHHHHHCEEEEEE
T ss_pred cCCceEEEEcccccCChhh-cCCceEEE-EecccccCCH-HHHHHHHHHHHHHhCCCCc
Confidence 4679999999988854332 24799765 5432121111 1236799999999999999
No 184
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=50.57 E-value=25 Score=30.92 Aligned_cols=26 Identities=15% Similarity=0.420 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCCcEEEEeccchhh
Q 019882 202 KPFFDTIAKALRPGGVLCNMAESMWL 227 (334)
Q Consensus 202 ~eFy~~v~~~L~~gGilv~q~~sp~~ 227 (334)
.+++..+++.|+|||.++...+....
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~~~~~~~ 61 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIFIDDREI 61 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE-CCEE
T ss_pred HHHHHHHHhhcCCCeeEEEEecchhh
Confidence 56778999999999999987754433
No 185
>PRK04296 thymidine kinase; Provisional
Probab=47.57 E-value=24 Score=31.47 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=30.8
Q ss_pred chHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 168 GDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 168 ~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.+....+++ .++.+|+||+|-- ++++.+....+.+.|++.|+-+.
T Consensus 66 ~~~~~~~~~-~~~~~dvviIDEa-------q~l~~~~v~~l~~~l~~~g~~vi 110 (190)
T PRK04296 66 TDIFELIEE-EGEKIDCVLIDEA-------QFLDKEQVVQLAEVLDDLGIPVI 110 (190)
T ss_pred HHHHHHHHh-hCCCCCEEEEEcc-------ccCCHHHHHHHHHHHHHcCCeEE
Confidence 345555554 3457999999985 56767755667778888886554
No 186
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=46.27 E-value=10 Score=35.21 Aligned_cols=54 Identities=30% Similarity=0.512 Sum_probs=32.5
Q ss_pred CCCeEEEEchHHH-HHhhCCCCceeEEEECCCCCCCCCcCCCCH---HHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVE-FLRQVPRGKYDAIIVDSSDPVGPAQELVEK---PFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~-fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~---eFy~~v~~~L~~gGilv~ 220 (334)
.+++.-++.=|.+ |... ..+||+|-+= ....+|... +|++.|+.+|+|+|++++
T Consensus 102 ~~~v~~~~~~gLQ~f~P~--~~~YDlIW~Q-----W~lghLTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 102 NPRVGEFYCVGLQDFTPE--EGKYDLIWIQ-----WCLGHLTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp GCCEEEEEES-GGG------TT-EEEEEEE-----S-GGGS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCcceEEecCHhhccCC--CCcEeEEEeh-----HhhccCCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 4566655555554 4432 3589999973 123344443 588999999999999986
No 187
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=46.04 E-value=38 Score=32.61 Aligned_cols=58 Identities=16% Similarity=0.339 Sum_probs=35.7
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
..+++++.+|+...-.+. ..||+|++-+.-....- --.+.++.+.+.++||.+++.-.
T Consensus 173 ~~~m~f~~~d~~~~~~dl--~~~DvV~lAalVg~~~e---~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 173 SKRMSFITADVLDVTYDL--KEYDVVFLAALVGMDAE---PKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -SSEEEEES-GGGG-GG------SEEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred cCCeEEEecchhcccccc--ccCCEEEEhhhcccccc---hHHHHHHHHHhhCCCCcEEEEec
Confidence 579999999987654443 46999999886321111 23679999999999999998743
No 188
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=45.02 E-value=10 Score=31.65 Aligned_cols=21 Identities=48% Similarity=0.751 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCCcEEEEec
Q 019882 202 KPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 202 ~eFy~~v~~~L~~gGilv~q~ 222 (334)
+.||+.+.+.|+|||+++...
T Consensus 24 ~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 24 KRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHHHHEEEEEEEEEE-
T ss_pred HHHHHHHHHhhCCCCEEEEeC
Confidence 469999999999999999743
No 189
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=44.66 E-value=40 Score=31.50 Aligned_cols=64 Identities=23% Similarity=0.368 Sum_probs=46.2
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCC-----------cCCC------------CHHHHHHHHHhcCCCc
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPA-----------QELV------------EKPFFDTIAKALRPGG 216 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa-----------~~L~------------t~eFy~~v~~~L~~gG 216 (334)
+-.-+++.+|+.+.++..++..+|+|+.|.+-..... ..+. ..+-+..+.+.|+++|
T Consensus 14 ~~~~~i~~~d~~~~l~~~~~~svDli~tdppy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvl~~~~ 93 (302)
T COG0863 14 DELSKIYKGDCLEILKSLPENSVDLIFTDPPYNNVKAGRKLGFLKRWLDAWDGWDSRGIYLKFILLQWLAEQKRVLKPGG 93 (302)
T ss_pred hhhhheecchHHHHHhhccccceeEEEcCCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHHhhheecCCC
Confidence 4567899999999999887679999999987654321 1122 3344556788999999
Q ss_pred EEEEecc
Q 019882 217 VLCNMAE 223 (334)
Q Consensus 217 ilv~q~~ 223 (334)
.+.+...
T Consensus 94 ~~~v~~~ 100 (302)
T COG0863 94 SLYVIDP 100 (302)
T ss_pred EEEEECC
Confidence 8887543
No 190
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=44.60 E-value=1.7e+02 Score=28.81 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=35.3
Q ss_pred CeEEEEchHHHHHhhC---------C-----CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 162 RVRLHIGDAVEFLRQV---------P-----RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~---------~-----~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++++.+|+.+++... . ...||+||+|.+. .|. ..+..+.+. ++++++.+-+
T Consensus 246 ~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR-~G~-----~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 246 NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPR-AGL-----DPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCC-CCC-----cHHHHHHHH---cCCcEEEEEc
Confidence 6999999999998741 0 1248999999973 332 234555544 4788877755
No 191
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=44.48 E-value=9.9 Score=34.17 Aligned_cols=45 Identities=18% Similarity=0.283 Sum_probs=26.7
Q ss_pred CceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 180 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 180 ~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
.+||+||++-...........+..+++.+++-.+.||-++.-.+.
T Consensus 66 ~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmigG~ 110 (177)
T PF07090_consen 66 NRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLMIGGP 110 (177)
T ss_dssp CT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEEE-ST
T ss_pred hcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEEEeCh
Confidence 479999998754322111223889999999999999888876553
No 192
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=42.89 E-value=21 Score=31.63 Aligned_cols=33 Identities=24% Similarity=0.572 Sum_probs=21.1
Q ss_pred CCCeEEEEchHHHHHhhCCCCc-eeEEEECCCCCCC
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGK-YDAIIVDSSDPVG 194 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~-yDvIIvD~~dp~g 194 (334)
+.|++++.+|.++.+++..... +|+|++|. |+|
T Consensus 47 ~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP--PWG 80 (163)
T PF09445_consen 47 ADNIDFICGDFFELLKRLKSNKIFDVVFLSP--PWG 80 (163)
T ss_dssp GGGEEEEES-HHHHGGGB------SEEEE-----BS
T ss_pred CCcEEEEeCCHHHHHhhccccccccEEEECC--CCC
Confidence 5799999999999998753223 89999987 454
No 193
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=42.85 E-value=21 Score=33.11 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHhcCCCcEEEE
Q 019882 200 VEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 200 ~t~eFy~~v~~~L~~gGilv~ 220 (334)
+-..++..+.++|||||++++
T Consensus 144 ~A~~vna~vf~~LKPGGv~~V 164 (238)
T COG4798 144 TAAKVNAAVFKALKPGGVYLV 164 (238)
T ss_pred hHHHHHHHHHHhcCCCcEEEE
Confidence 446799999999999999986
No 194
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=40.67 E-value=20 Score=32.67 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=32.6
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
++....|--.+- - ++.||+|+....-..- ...+. ...++.++++++|||+++.
T Consensus 79 i~~~~~Dl~~~~--~-~~~yD~I~st~v~~fL-~~~~~-~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 79 IRTRVADLNDFD--F-PEEYDFIVSTVVFMFL-QRELR-PQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EEEEE-BGCCBS----TTTEEEEEEESSGGGS--GGGH-HHHHHHHHHTEEEEEEEEE
T ss_pred eEEEEecchhcc--c-cCCcCEEEEEEEeccC-CHHHH-HHHHHHHHhhcCCcEEEEE
Confidence 888888844331 2 3579999864321111 11111 4578999999999999775
No 195
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=39.83 E-value=17 Score=34.58 Aligned_cols=56 Identities=29% Similarity=0.389 Sum_probs=39.0
Q ss_pred CCCCeEE--EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 159 EDPRVRL--HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 159 ~dpRv~v--iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+||-+++ .++| -++|. ..++++|+||.-.+-.+.- .| ...+..|+.+|+|+|+++.
T Consensus 115 qdp~i~~~~~v~D-EE~Ld-f~ens~DLiisSlslHW~N--dL--Pg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 115 QDPSIETSYFVGD-EEFLD-FKENSVDLIISSLSLHWTN--DL--PGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred CCCceEEEEEecc-hhccc-ccccchhhhhhhhhhhhhc--cC--chHHHHHHHhcCCCccchh
Confidence 5676654 4555 46665 3467899999877655421 11 1378899999999999985
No 196
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=39.77 E-value=27 Score=33.04 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=41.4
Q ss_pred CCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 157 GFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 157 ~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++.+++++++.|+-.+-|.+.+.+++-++-+|+- .+. -|.+-++.++.+|.+||+++.-
T Consensus 153 gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~D--lYe----sT~~aLe~lyprl~~GGiIi~D 211 (248)
T PF05711_consen 153 GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCD--LYE----STKDALEFLYPRLSPGGIIIFD 211 (248)
T ss_dssp TTSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHH----HHHHHHHHHGGGEEEEEEEEES
T ss_pred CCCcccEEEECCcchhhhccCCCccEEEEEEecc--chH----HHHHHHHHHHhhcCCCeEEEEe
Confidence 3457899999999888888776678988888873 111 1567788899999999999983
No 197
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=39.59 E-value=63 Score=31.74 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=33.7
Q ss_pred chHHHHHhhCCCCceeEEEECCCCCCCCCcCC-CCHHHHHHHHHhcCCCcEEEEe
Q 019882 168 GDAVEFLRQVPRGKYDAIIVDSSDPVGPAQEL-VEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 168 ~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L-~t~eFy~~v~~~L~~gGilv~q 221 (334)
..|++.|.. .+.||+|+.= |..-|+ .-.+..+.+++.|++||.++..
T Consensus 171 plgvE~Lp~--~~~FDtVF~M-----GVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 171 PLGVEDLPN--LGAFDTVFSM-----GVLYHRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred Ccchhhccc--cCCcCEEEEe-----eehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 578888877 3689999973 221111 1246788999999999999964
No 198
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=39.30 E-value=47 Score=33.09 Aligned_cols=52 Identities=27% Similarity=0.387 Sum_probs=36.1
Q ss_pred hHHHHHhhCCCCceeEEEECCCCCCCC-C-----cCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 169 DAVEFLRQVPRGKYDAIIVDSSDPVGP-A-----QELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 169 Dg~~fL~~~~~~~yDvIIvD~~dp~gp-a-----~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
||.. +. .++.++|.|++|.+=.... . ..|| .+|++...+.|++||.+|.++.
T Consensus 254 Da~~-lp-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly-~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 254 DATN-LP-LRDNSVDAIATDPPYGRSTKIKGEGLDELY-EEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cccc-CC-CCCCccceEEecCCCCcccccccccHHHHH-HHHHHHHHHHhhcCcEEEEecC
Confidence 7543 43 3345799999998643322 1 2334 6899999999999999998664
No 199
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=39.27 E-value=48 Score=31.98 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=37.1
Q ss_pred CCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 159 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+++|+..+.+||-+ |. -++..||...+--.=-..+ --..-.+.++|.|||||.+..
T Consensus 157 ~~~~~~w~~~dAE~-Lp-Fdd~s~D~yTiafGIRN~t----h~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 157 ASSRVEWVEGDAED-LP-FDDDSFDAYTIAFGIRNVT----HIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred cCCceEEEeCCccc-CC-CCCCcceeEEEecceecCC----CHHHHHHHHHHhcCCCcEEEE
Confidence 57789999999865 33 4456788765532111111 113367889999999999884
No 200
>PTZ00357 methyltransferase; Provisional
Probab=38.38 E-value=71 Score=35.08 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=40.3
Q ss_pred CCCeEEEEchHHHHHhhC-------C--CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCC----CcE
Q 019882 160 DPRVRLHIGDAVEFLRQV-------P--RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRP----GGV 217 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~-------~--~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~----gGi 217 (334)
+.+|+||..|.|.|-... + -++.|+||..+-...|- .=.+.|-...+.+.|++ +||
T Consensus 762 G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGD--NELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 762 GHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGD--NELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred CCeEEEEeCcccccccccccccccccccccccceehHhhhccccc--ccCCHHHHHHHHHhhhhhcccccc
Confidence 468999999999993211 0 02799999988655543 33567888888888876 776
No 201
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.37 E-value=47 Score=29.73 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCCCcEEEE
Q 019882 203 PFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 203 eFy~~v~~~L~~gGilv~ 220 (334)
++.+.|.+.|+|||++-.
T Consensus 67 ~alkechr~Lrp~G~Lri 84 (185)
T COG4627 67 SALKECHRFLRPGGKLRI 84 (185)
T ss_pred HHHHHHHHHhCcCcEEEE
Confidence 478899999999999853
No 202
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=37.75 E-value=32 Score=33.00 Aligned_cols=52 Identities=23% Similarity=0.284 Sum_probs=32.6
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEE-CCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIV-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIv-D~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
....+++-.| +|- +. +.+||+|.+ ..-|-..-| ....+.++++|+|+|+++.
T Consensus 134 ~kg~~vl~~~--~w~-~~-~~~fDvIscLNvLDRc~~P-----~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 134 KKGFTVLDID--DWQ-QT-DFKFDVISCLNVLDRCDRP-----LTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred hCCCeEEehh--hhh-cc-CCceEEEeehhhhhccCCH-----HHHHHHHHHHhCCCCEEEE
Confidence 3455666444 343 33 468999985 222221111 2478999999999999885
No 203
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=37.63 E-value=1.1e+02 Score=26.95 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=28.6
Q ss_pred eeEEEECCCCCCCC---------CcCCCCHHHH-H-HHHHhcCCCcEEEEeccchhhh
Q 019882 182 YDAIIVDSSDPVGP---------AQELVEKPFF-D-TIAKALRPGGVLCNMAESMWLH 228 (334)
Q Consensus 182 yDvIIvD~~dp~gp---------a~~L~t~eFy-~-~v~~~L~~gGilv~q~~sp~~~ 228 (334)
||||++|.+=+... .....+.+-. + -+.+.+.++|++..|+.+....
T Consensus 1 fdvI~~DPPW~~~~~~~~~~~~~~Y~tm~~~~i~~Lpv~~l~~~~~~lflWvTn~~~~ 58 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKGGAEAHYPTMSLDEIKSLPVPQLAAPGALLFLWVTNSQLP 58 (176)
T ss_pred CCEEEEeCCCCCcCcccccccccCCCccCHHHHHhCCHHHhCCCCcEEEEEeccchhh
Confidence 89999998643322 1112222222 2 2457778888999999876553
No 204
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=37.33 E-value=1.3e+02 Score=32.57 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=52.6
Q ss_pred HhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc-chhhhhhHHHHHHHHHHHhcCCceeEEEE
Q 019882 174 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE-SMWLHTHLIEDMISICRETFKGSVHYAWA 252 (334)
Q Consensus 174 L~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~-sp~~~~~~~~~i~~tl~~vF~~~v~~~~~ 252 (334)
+++..+-++|+||+|.--.+......-+.---+.+...|.++|.++.-+. +.... .-..++..+...|+ .|....
T Consensus 408 l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~--~~~~il~~lg~~F~-~V~l~q- 483 (675)
T PF14314_consen 408 LKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLS--PDYNILDLLGRYFK-SVELVQ- 483 (675)
T ss_pred HHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhc--chhhHHHHHHhhcC-ceEEEE-
Confidence 33333568999999986332211111111222344567899999997542 21221 12368888999999 676543
Q ss_pred EeeecCCCc--EEEEEeecCC
Q 019882 253 SVPTYPSGI--IGFLICSTEG 271 (334)
Q Consensus 253 ~vPsyp~g~--w~f~laSk~~ 271 (334)
+.|-|.. -.++++++..
T Consensus 484 --T~~SSs~TSEVYlv~~~~~ 502 (675)
T PF14314_consen 484 --TQFSSSFTSEVYLVFQKLK 502 (675)
T ss_pred --CCCCCCCceEEEEEEeccc
Confidence 3443332 3578888753
No 205
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=36.97 E-value=97 Score=24.93 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCcEEEEeccchhh-hhhHHHHHHHHHHHh
Q 019882 202 KPFFDTIAKALRPGGVLCNMAESMWL-HTHLIEDMISICRET 242 (334)
Q Consensus 202 ~eFy~~v~~~L~~gGilv~q~~sp~~-~~~~~~~i~~tl~~v 242 (334)
.-|++...+.| +|+++.-..+.|+ .....+.+.+.+-+-
T Consensus 33 ~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~ 72 (106)
T PF07669_consen 33 ILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNN 72 (106)
T ss_pred HHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcC
Confidence 35888888888 9999876677787 655555555555443
No 206
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=34.31 E-value=57 Score=33.16 Aligned_cols=57 Identities=28% Similarity=0.439 Sum_probs=40.4
Q ss_pred eeEEEECCCC--CCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHh
Q 019882 182 YDAIIVDSSD--PVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET 242 (334)
Q Consensus 182 yDvIIvD~~d--p~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~v 242 (334)
-||+|++++= +..+...--.+.|.+.+++.|.+||.++..+-. ....++++..|...
T Consensus 181 ~DvLI~EsTYg~~~~~~r~~~e~~f~~~v~~~l~~GG~vlipafa----~graQEll~~L~~~ 239 (427)
T COG1236 181 IDVLIVESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFA----LGRAQELLLILREL 239 (427)
T ss_pred CcEEEEecccCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEeccc----ccHHHHHHHHHHHH
Confidence 5999999973 344555555667999999999999999985422 22356666666653
No 207
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=33.93 E-value=64 Score=30.93 Aligned_cols=46 Identities=28% Similarity=0.477 Sum_probs=31.4
Q ss_pred HHHhhCCCCceeEEEECCCCCCC-C---CcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 172 EFLRQVPRGKYDAIIVDSSDPVG-P---AQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 172 ~fL~~~~~~~yDvIIvD~~dp~g-p---a~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+||... ..+||+|++=+-.-+- . -.. -+.||+.+.+.|.|||++|+
T Consensus 158 dfl~~~-~~~fDiIlcLSiTkWIHLNwgD~G--L~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 158 DFLDMI-QPEFDIILCLSITKWIHLNWGDDG--LRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred hhhhhc-cccccEEEEEEeeeeEecccccHH--HHHHHHHHHHhhCcCcEEEE
Confidence 455433 4679999976543220 0 011 25799999999999999998
No 208
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=33.29 E-value=1.4e+02 Score=29.19 Aligned_cols=70 Identities=26% Similarity=0.341 Sum_probs=41.6
Q ss_pred CCCeEEEEchHH--HHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcE-EEEeccchhhhhhHHHHHH
Q 019882 160 DPRVRLHIGDAV--EFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV-LCNMAESMWLHTHLIEDMI 236 (334)
Q Consensus 160 dpRv~viv~Dg~--~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGi-lv~q~~sp~~~~~~~~~i~ 236 (334)
...|++++.|-- -|+.+ ...+|+|++|.+.|+-...+ +.++|+.+|. +|.- ||.. +.++...
T Consensus 156 ~~~vt~~hrDVc~~GF~~k--s~~aDaVFLDlPaPw~AiPh---------a~~~lk~~g~r~csF--SPCI--EQvqrtc 220 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGSGFLIK--SLKADAVFLDLPAPWEAIPH---------AAKILKDEGGRLCSF--SPCI--EQVQRTC 220 (314)
T ss_pred CcceEEEEeecccCCcccc--ccccceEEEcCCChhhhhhh---------hHHHhhhcCceEEec--cHHH--HHHHHHH
Confidence 457888877743 34443 35799999999999854322 2337888774 4442 3433 2344445
Q ss_pred HHHHHh-cC
Q 019882 237 SICRET-FK 244 (334)
Q Consensus 237 ~tl~~v-F~ 244 (334)
..+++. |-
T Consensus 221 e~l~~~gf~ 229 (314)
T KOG2915|consen 221 EALRSLGFI 229 (314)
T ss_pred HHHHhCCCc
Confidence 555552 54
No 209
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=32.44 E-value=44 Score=29.56 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=36.1
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCC-----cCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPA-----QELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa-----~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
+..+.+...|+.+.- .. ++.+|+||.|.+=..... ..|| .+|++.+++.|++..++++.
T Consensus 87 ~~~i~~~~~D~~~l~-~~-~~~~d~IvtnPPyG~r~~~~~~~~~ly-~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 87 EDYIDFIQWDARELP-LP-DGSVDAIVTNPPYGRRLGSKKDLEKLY-RQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp CGGEEEEE--GGGGG-GT-TSBSCEEEEE--STTSHCHHHHHHHHH-HHHHHHHHCHSTTCEEEEEE
T ss_pred CCceEEEecchhhcc-cc-cCCCCEEEECcchhhhccCHHHHHHHH-HHHHHHHHHHCCCCEEEEEE
Confidence 346899999988765 22 468999999985322111 2333 45778888889995555553
No 210
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=32.42 E-value=1.3e+02 Score=22.86 Aligned_cols=49 Identities=20% Similarity=0.212 Sum_probs=29.9
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...|+.+.+.......+|+||+|..-|... ..++.+.+++.- ++.-++.
T Consensus 28 ~~~~~~~~~~~~~~~~~d~iiid~~~~~~~-----~~~~~~~i~~~~-~~~~ii~ 76 (112)
T PF00072_consen 28 TASSGEEALELLKKHPPDLIIIDLELPDGD-----GLELLEQIRQIN-PSIPIIV 76 (112)
T ss_dssp EESSHHHHHHHHHHSTESEEEEESSSSSSB-----HHHHHHHHHHHT-TTSEEEE
T ss_pred EECCHHHHHHHhcccCceEEEEEeeecccc-----cccccccccccc-ccccEEE
Confidence 345554444333234699999998665532 246888887766 5555444
No 211
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=32.29 E-value=90 Score=29.55 Aligned_cols=53 Identities=26% Similarity=0.378 Sum_probs=32.6
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+||--+...+=.++|.+.....||+||+|++-..+. --..+...+.+|-++|+
T Consensus 145 ~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~--------~d~~i~~~~~~g~viVt 197 (265)
T COG0489 145 IPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGD--------ADATVLQRIPDGVVIVT 197 (265)
T ss_pred CChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchH--------HHHHHHhccCCeEEEEe
Confidence 455555666667888887544499999999743332 12344555666445554
No 212
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=32.27 E-value=34 Score=31.24 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=25.7
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCC
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSS 190 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~ 190 (334)
..++|+.+|.-+-|...++++||.||+--+
T Consensus 55 rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 55 RGVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred cCCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 468899999999999888899999998543
No 213
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=31.14 E-value=31 Score=34.10 Aligned_cols=56 Identities=30% Similarity=0.503 Sum_probs=36.6
Q ss_pred eEEEEchHHHHHhhCC-CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 163 VRLHIGDAVEFLRQVP-RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~-~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
..+-.||=.++..... .+.||+|++=-+= ..+... -||.+.+.+.|+|||+.|+-.
T Consensus 240 fsicaGDF~evy~~s~~~~~~d~VvTcfFI--DTa~Ni--leYi~tI~~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 240 FSICAGDFLEVYGTSSGAGSYDVVVTCFFI--DTAHNI--LEYIDTIYKILKPGGVWINLG 296 (369)
T ss_pred ccccccceeEEecCcCCCCccceEEEEEEe--echHHH--HHHHHHHHHhccCCcEEEecc
Confidence 4456677666655432 2469999864331 111222 389999999999999999743
No 214
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=30.35 E-value=1e+02 Score=28.64 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=43.9
Q ss_pred hCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 150 YFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 150 ~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
|+..+...++=++++++.+.+=+|=.+. .. ||+|..=+..+.. ...+.+...|++||.++..-
T Consensus 106 FL~~~~~eL~L~nv~i~~~RaE~~~~~~-~~-~D~vtsRAva~L~--------~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 106 FLREVKKELGLENVEIVHGRAEEFGQEK-KQ-YDVVTSRAVASLN--------VLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred HHHHHHHHhCCCCeEEehhhHhhccccc-cc-CcEEEeehccchH--------HHHHHHHHhcccCCcchhhh
Confidence 3333333345578999999877775432 12 9999988775543 37789999999999887643
No 215
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=29.51 E-value=51 Score=30.71 Aligned_cols=58 Identities=5% Similarity=0.091 Sum_probs=37.9
Q ss_pred CCCCeEEEEchHHHHHhh-CCCCceeEEEECCCC--CCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 159 EDPRVRLHIGDAVEFLRQ-VPRGKYDAIIVDSSD--PVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~-~~~~~yDvIIvD~~d--p~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...+++++++|.+++=.. ...++||+|. |..- ...|. --..+.+.+.+.|+|||.++.
T Consensus 101 ~~~~i~~~~gD~f~l~~~~~~~~~fD~Vy-Dra~~~Alpp~---~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 101 KGDDIEIYVADIFNLPKIANNLPVFDIWY-DRGAYIALPND---LRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred ccCceEEEEccCcCCCccccccCCcCeee-eehhHhcCCHH---HHHHHHHHHHHHhCCCcEEEE
Confidence 346899999999885211 1124799854 4332 22121 235789999999999998874
No 216
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=28.93 E-value=1e+02 Score=29.41 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHhcCCCcEEEEecc
Q 019882 200 VEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 200 ~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
+.+.|...+.+.|+|||+++...+
T Consensus 216 ~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 216 VYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred HHHHHHHhhHHHcCCCcEEEEEEC
Confidence 345677788899999999998654
No 217
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=27.76 E-value=1.1e+02 Score=26.97 Aligned_cols=33 Identities=30% Similarity=0.709 Sum_probs=23.2
Q ss_pred CceeEEEECCCCCCCCCcCCCCHHHH----HHHHHhcCCCcEEEE
Q 019882 180 GKYDAIIVDSSDPVGPAQELVEKPFF----DTIAKALRPGGVLCN 220 (334)
Q Consensus 180 ~~yDvIIvD~~dp~gpa~~L~t~eFy----~~v~~~L~~gGilv~ 220 (334)
.+||+||+|.+ ..+.|.. +.++-.+++++-++.
T Consensus 85 ~~~d~vv~DPP--------Fl~~ec~~k~a~ti~~L~k~~~kii~ 121 (162)
T PF10237_consen 85 GKFDVVVIDPP--------FLSEECLTKTAETIRLLLKPGGKIIL 121 (162)
T ss_pred CCceEEEECCC--------CCCHHHHHHHHHHHHHHhCccceEEE
Confidence 57999999984 2566666 556666677666664
No 218
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=27.36 E-value=71 Score=30.95 Aligned_cols=71 Identities=25% Similarity=0.350 Sum_probs=41.3
Q ss_pred CceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeecCC
Q 019882 180 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPS 259 (334)
Q Consensus 180 ~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~ 259 (334)
.+||+|+....... | .+....+.+.|+|||.++. |-.+.. ....+.+.+++-|. . ...-. .
T Consensus 224 ~~~dlvvANI~~~v-----L--~~l~~~~~~~l~~~G~lIl---SGIl~~-~~~~v~~a~~~g~~-~-----~~~~~--~ 284 (295)
T PF06325_consen 224 GKFDLVVANILADV-----L--LELAPDIASLLKPGGYLIL---SGILEE-QEDEVIEAYKQGFE-L-----VEERE--E 284 (295)
T ss_dssp S-EEEEEEES-HHH-----H--HHHHHHCHHHEEEEEEEEE---EEEEGG-GHHHHHHHHHTTEE-E-----EEEEE--E
T ss_pred ccCCEEEECCCHHH-----H--HHHHHHHHHhhCCCCEEEE---ccccHH-HHHHHHHHHHCCCE-E-----EEEEE--E
Confidence 68999998765321 1 2466778899999999998 333332 23455555554343 1 12222 2
Q ss_pred CcEEEEEeec
Q 019882 260 GIIGFLICST 269 (334)
Q Consensus 260 g~w~f~laSk 269 (334)
|.|.-+++.|
T Consensus 285 ~~W~~l~~~K 294 (295)
T PF06325_consen 285 GEWVALVFKK 294 (295)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 6687666655
No 219
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=26.49 E-value=1.2e+02 Score=28.09 Aligned_cols=19 Identities=42% Similarity=0.856 Sum_probs=13.6
Q ss_pred HHHhhCCCCceeEEEECCCC
Q 019882 172 EFLRQVPRGKYDAIIVDSSD 191 (334)
Q Consensus 172 ~fL~~~~~~~yDvIIvD~~d 191 (334)
..|++.. +.||+||+|++.
T Consensus 204 ~~l~~l~-~~yD~ViiD~pp 222 (274)
T TIGR03029 204 DLLNKVM-GDYDVVIVDTPS 222 (274)
T ss_pred HHHHHHH-hcCCEEEEeCCC
Confidence 4455543 579999999963
No 220
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=26.16 E-value=2.2e+02 Score=26.65 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=36.2
Q ss_pred EchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 167 IGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 167 v~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+.|+..++... -|+|++|.+=|.+-. -+|...++..=-+..|+++-+
T Consensus 35 ~~ea~~~i~~~~---pDLILLDiYmPd~~G-----i~lL~~ir~~~~~~DVI~iTA 82 (224)
T COG4565 35 LEEAKMIIEEFK---PDLILLDIYMPDGNG-----IELLPELRSQHYPVDVIVITA 82 (224)
T ss_pred HHHHHHHHHhhC---CCEEEEeeccCCCcc-----HHHHHHHHhcCCCCCEEEEec
Confidence 357888888753 499999998877643 468888888888888888744
No 221
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=26.09 E-value=1.3e+02 Score=29.63 Aligned_cols=67 Identities=21% Similarity=0.176 Sum_probs=39.7
Q ss_pred CCeEEEEchH---HHHHhhCCCCceeEEEECCCCCCCC--CcCCCC---HH-HHHH--HHHhcCCCcEEEEeccchhhh
Q 019882 161 PRVRLHIGDA---VEFLRQVPRGKYDAIIVDSSDPVGP--AQELVE---KP-FFDT--IAKALRPGGVLCNMAESMWLH 228 (334)
Q Consensus 161 pRv~viv~Dg---~~fL~~~~~~~yDvIIvD~~dp~gp--a~~L~t---~e-Fy~~--v~~~L~~gGilv~q~~sp~~~ 228 (334)
||-+++++|. -.++... +..+|+||+|.+=+.-. ...-|+ .. .... +...+.|.|++++|+.+--.+
T Consensus 162 pkSsF~~gDv~~~~qll~~H-~llpdlIIiDPPW~NKSVkRs~~Ysmlsnl~ql~~IPI~kl~~p~~lvA~WcTNrqkh 239 (366)
T KOG2356|consen 162 PKSSFHVGDVKDIEQLLRAH-DLLPDLIIIDPPWFNKSVKRSRTYSMLSNLLQLLDIPIIKLHDPLCLVAFWCTNRQKH 239 (366)
T ss_pred CccceecccHHHHHHHhHHH-hhcCCeEEeCCCCCCcccccccceecccchhhhhcCCchhhcCCCceEEEEEcCcHHH
Confidence 6778888765 3455433 45679999998754321 111111 11 1111 245678999999999875433
No 222
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=25.40 E-value=94 Score=28.99 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=19.0
Q ss_pred CceeEEEECCCCCCCCCc-CCCCHHHHHHHHHhcCC
Q 019882 180 GKYDAIIVDSSDPVGPAQ-ELVEKPFFDTIAKALRP 214 (334)
Q Consensus 180 ~~yDvIIvD~~dp~gpa~-~L~t~eFy~~v~~~L~~ 214 (334)
..||+||+|++ |.+..- -|--.+.+..+...|.+
T Consensus 123 ~~yD~VVvDtp-Ptg~tlrlL~lp~~l~~~~~~l~d 157 (254)
T cd00550 123 AEYDVVVFDTA-PTGHTLRLLSLPTVLSWAREILSD 157 (254)
T ss_pred CCCCEEEECCC-CcHHHHHHHHhHHHHHHHHHHhcC
Confidence 36999999997 333221 22223444444556655
No 223
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=25.37 E-value=1.3e+02 Score=30.37 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=41.7
Q ss_pred CceeEEEECCCC-CCCC---CcCC---------------CCHHHHHHHHHhcCCCcEEEEec--cchhhhhhHHHHHHHH
Q 019882 180 GKYDAIIVDSSD-PVGP---AQEL---------------VEKPFFDTIAKALRPGGVLCNMA--ESMWLHTHLIEDMISI 238 (334)
Q Consensus 180 ~~yDvIIvD~~d-p~gp---a~~L---------------~t~eFy~~v~~~L~~gGilv~q~--~sp~~~~~~~~~i~~t 238 (334)
..||=|++|.+- .+|. ...+ ....-.....+.|++||.+|--+ -||.-+...+.++++.
T Consensus 235 ~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~ 314 (375)
T KOG2198|consen 235 LKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQK 314 (375)
T ss_pred hhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHH
Confidence 579999999763 1221 1122 22344556678999999999543 4666566667777777
Q ss_pred HHHhcC
Q 019882 239 CRETFK 244 (334)
Q Consensus 239 l~~vF~ 244 (334)
+...|+
T Consensus 315 ~~~~~~ 320 (375)
T KOG2198|consen 315 VGGAVE 320 (375)
T ss_pred hcCccc
Confidence 766666
No 224
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=25.19 E-value=2.9e+02 Score=25.68 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=37.3
Q ss_pred CCCCceeEEEECCCC-CCCC--CcCCCCHHHHHHH-------HHhcCCCcEEEE--eccchhhhhhHHHHHHHHHHHhcC
Q 019882 177 VPRGKYDAIIVDSSD-PVGP--AQELVEKPFFDTI-------AKALRPGGVLCN--MAESMWLHTHLIEDMISICRETFK 244 (334)
Q Consensus 177 ~~~~~yDvIIvD~~d-p~gp--a~~L~t~eFy~~v-------~~~L~~gGilv~--q~~sp~~~~~~~~~i~~tl~~vF~ 244 (334)
.++..-||||.|... +.|. -.+.- -.++| -..|.|+|.++. |.++. -..+.+.|.++|.
T Consensus 132 lp~r~VdvVlSDMapnaTGvr~~Dh~~---~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e------~~~l~r~l~~~f~ 202 (232)
T KOG4589|consen 132 LPNRPVDVVLSDMAPNATGVRIRDHYR---SIELCDSALLFALTLLIPNGSFVCKLWDGSE------EALLQRRLQAVFT 202 (232)
T ss_pred CCCCcccEEEeccCCCCcCcchhhHHH---HHHHHHHHHHHhhhhcCCCcEEEEEEecCCc------hHHHHHHHHHHhh
Confidence 356789999999653 4443 12211 22233 345679999996 44432 2345567778888
Q ss_pred CceeE
Q 019882 245 GSVHY 249 (334)
Q Consensus 245 ~~v~~ 249 (334)
.|+.
T Consensus 203 -~Vk~ 206 (232)
T KOG4589|consen 203 -NVKK 206 (232)
T ss_pred -hcEe
Confidence 5543
No 225
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=24.28 E-value=98 Score=28.89 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=12.7
Q ss_pred CceeEEEECCCCCCCC
Q 019882 180 GKYDAIIVDSSDPVGP 195 (334)
Q Consensus 180 ~~yDvIIvD~~dp~gp 195 (334)
-.||||++|++.+..+
T Consensus 137 ~~WDvImVDgP~Gy~~ 152 (225)
T TIGR01627 137 TKWDVIVVDGPRGDDL 152 (225)
T ss_pred ccCcEEEEeCCCCCCC
Confidence 4699999999876544
No 226
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=23.99 E-value=2.8e+02 Score=25.09 Aligned_cols=53 Identities=13% Similarity=0.067 Sum_probs=34.2
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...|+-++++......+|++|+|..|+..|. .-..++.+.+++.-.+=-|++.
T Consensus 22 ~~~~~~~~l~~~~~~~pd~vl~dl~d~~mp~--~~Gl~~~~~l~~~~p~~~iIvl 74 (207)
T PRK11475 22 TFSSQSSFQDAMSRISFSAVIFSLSAMRSER--REGLSCLTELAIKFPRMRRLVI 74 (207)
T ss_pred EeCCHHHHHHHhccCCCCEEEeeccccCCCC--CCHHHHHHHHHHHCCCCCEEEE
Confidence 4668888887765457899998888765442 1234677777765443355554
No 227
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=23.78 E-value=1.1e+02 Score=30.36 Aligned_cols=55 Identities=27% Similarity=0.500 Sum_probs=41.4
Q ss_pred CCeEEEEchHHHHHhhCCCCcee-EEEECCCC--CCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYD-AIIVDSSD--PVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yD-vIIvD~~d--p~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.||.||.+|-.++|+..+.+.-| +|++|+.| |.+.. .+-+..+.+-+.+|..++.
T Consensus 307 ~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~ql-----n~lws~isrta~~gA~Vif 364 (414)
T COG5379 307 RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQL-----NSLWSEISRTAEAGARVIF 364 (414)
T ss_pred hheeeecccHHHHhccCCCCCcceEEEecchhhcccchH-----HHHHHHHhhccCCCcEEEE
Confidence 58999999999999865445566 46678877 44443 3467888899999988875
No 228
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=23.21 E-value=1.3e+02 Score=32.71 Aligned_cols=59 Identities=14% Similarity=0.322 Sum_probs=34.8
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC--CcCCCCHHHHHHHHHhcC---CCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP--AQELVEKPFFDTIAKALR---PGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp--a~~L~t~eFy~~v~~~L~---~gGilv~q 221 (334)
.+++++.+|..+.-.....++||+||.+.+ .|. ...--..++|+.+-+.|+ +|+-++.-
T Consensus 283 ~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP--Yg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ll 346 (702)
T PRK11783 283 ELITFEVKDVADLKNPLPKGPTGLVISNPP--YGERLGEEPALIALYSQLGRRLKQQFGGWNAALF 346 (702)
T ss_pred cceEEEeCChhhcccccccCCCCEEEECCC--CcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 478999999988643322247999999964 332 111122356665555554 66655543
No 229
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=23.04 E-value=70 Score=32.91 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=33.2
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+...|.++.+. +.|||||+|...-...-..|. +=...+++.++|+=++.+
T Consensus 170 Iak~al~~ak~---~~~DvvIvDTAGRl~ide~Lm--~El~~Ik~~~~P~E~llV 219 (451)
T COG0541 170 IAKAALEKAKE---EGYDVVIVDTAGRLHIDEELM--DELKEIKEVINPDETLLV 219 (451)
T ss_pred HHHHHHHHHHH---cCCCEEEEeCCCcccccHHHH--HHHHHHHhhcCCCeEEEE
Confidence 34455666554 469999999976544433333 234678899999988664
No 230
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=22.46 E-value=1.1e+02 Score=30.22 Aligned_cols=37 Identities=27% Similarity=0.513 Sum_probs=31.5
Q ss_pred CceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 180 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 180 ~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
..+|+||.-+-=|-.|++.|.|.+--+ .+|||-++|-
T Consensus 243 ~~~DivITTAlIPGrpAP~Lvt~~mv~----sMkpGSViVD 279 (356)
T COG3288 243 KEVDIVITTALIPGRPAPKLVTAEMVA----SMKPGSVIVD 279 (356)
T ss_pred cCCCEEEEecccCCCCCchhhHHHHHH----hcCCCcEEEE
Confidence 579999999988989999999987555 5899999884
No 231
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=22.20 E-value=1.2e+02 Score=28.42 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=50.1
Q ss_pred CCCeEEEEchHHHHHhhCC-CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE--eccchh---hhhhHHH
Q 019882 160 DPRVRLHIGDAVEFLRQVP-RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN--MAESMW---LHTHLIE 233 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~-~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~--q~~sp~---~~~~~~~ 233 (334)
.+++=-+++||+.--+=.. -+..|+|+.|...|.-. +=+...+..-|++||.++. .+.|.. .....++
T Consensus 121 R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa------~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~ 194 (229)
T PF01269_consen 121 RPNIIPILEDARHPEKYRMLVEMVDVIFQDVAQPDQA------RIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFA 194 (229)
T ss_dssp STTEEEEES-TTSGGGGTTTS--EEEEEEE-SSTTHH------HHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHH
T ss_pred CCceeeeeccCCChHHhhcccccccEEEecCCChHHH------HHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHH
Confidence 5778888999984332110 24799999999877531 2366677788999998774 333332 2335788
Q ss_pred HHHHHHHHh-cC
Q 019882 234 DMISICRET-FK 244 (334)
Q Consensus 234 ~i~~tl~~v-F~ 244 (334)
+..++|++. |.
T Consensus 195 ~e~~~L~~~~~~ 206 (229)
T PF01269_consen 195 EEVKKLKEEGFK 206 (229)
T ss_dssp HHHHHHHCTTCE
T ss_pred HHHHHHHHcCCC
Confidence 888999874 66
No 232
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=22.12 E-value=3.9e+02 Score=23.71 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=30.9
Q ss_pred EEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 165 LHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 165 viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
....++.+.++......+|+||+|..-|... ..++.+.+++...+.-+++.
T Consensus 34 ~~a~~~~~al~~~~~~~pdlvllD~~mp~~~-----gle~~~~l~~~~~~~~iivl 84 (225)
T PRK10046 34 LLAGNLAQARMMIERFKPGLILLDNYLPDGR-----GINLLHELVQAHYPGDVVFT 84 (225)
T ss_pred EEECCHHHHHHHHHhcCCCEEEEeCCCCCCc-----HHHHHHHHHhcCCCCCEEEE
Confidence 3456666666554345699999998766432 24566666664444445554
No 233
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=21.93 E-value=1.8e+02 Score=25.29 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=31.6
Q ss_pred CcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEEEEeecC
Q 019882 215 GGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTE 270 (334)
Q Consensus 215 gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f~laSk~ 270 (334)
+++++..+..|+...+.++.+++.++. . ....+|.+.+|.+ ++.++.
T Consensus 92 ~~vlv~~~D~P~l~~~~i~~l~~~~~~--~-----~~vi~p~~~GG~p--~l~~~~ 138 (195)
T TIGR03552 92 GAVLILMADLPLLTPRELKRLLAAATE--G-----DVVIAPDRGGGTN--ALFLRP 138 (195)
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhccc--C-----CEEEEecCCCCee--EEEECC
Confidence 378999999999988777777665532 1 1246899876653 344443
No 234
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=21.82 E-value=2.6e+02 Score=27.30 Aligned_cols=54 Identities=26% Similarity=0.404 Sum_probs=34.6
Q ss_pred CceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHH-HhcC
Q 019882 180 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR-ETFK 244 (334)
Q Consensus 180 ~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~-~vF~ 244 (334)
++||+|+...-. ..| ..+...+++.|+|||.++. |-.+..+ ...+.+.+. +-|.
T Consensus 228 ~~~DvIVANILA-----~vl--~~La~~~~~~lkpgg~lIl---SGIl~~q-~~~V~~a~~~~gf~ 282 (300)
T COG2264 228 GPFDVIVANILA-----EVL--VELAPDIKRLLKPGGRLIL---SGILEDQ-AESVAEAYEQAGFE 282 (300)
T ss_pred CcccEEEehhhH-----HHH--HHHHHHHHHHcCCCceEEE---EeehHhH-HHHHHHHHHhCCCe
Confidence 579999987531 111 2688899999999999998 3333222 345555553 3455
No 235
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=21.60 E-value=1.6e+02 Score=26.68 Aligned_cols=53 Identities=25% Similarity=0.286 Sum_probs=33.3
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCC-CCCCCCcCCCCHHHHHHHHHhcCCC--cEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS-DPVGPAQELVEKPFFDTIAKALRPG--GVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~-dp~gpa~~L~t~eFy~~v~~~L~~g--Gilv~ 220 (334)
.+|++++-+|-+ ...+ . +|+|++=-- .-+... -....++.++++|+|| |.+++
T Consensus 142 ~~rv~~~~gd~f---~~~P-~-~D~~~l~~vLh~~~d~---~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 142 ADRVEFVPGDFF---DPLP-V-ADVYLLRHVLHDWSDE---DCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp TTTEEEEES-TT---TCCS-S-ESEEEEESSGGGS-HH---HHHHHHHHHHHHSEECTTEEEEE
T ss_pred ccccccccccHH---hhhc-c-ccceeeehhhhhcchH---HHHHHHHHHHHHhCCCCCCeEEE
Confidence 678999988855 5554 4 999887221 011110 1134688999999988 88875
No 236
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=21.12 E-value=1.1e+02 Score=28.95 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=40.8
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCC--CCcC-----CCC----------HHHHHHHHHhcCCCcEEEEecc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVG--PAQE-----LVE----------KPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~g--pa~~-----L~t----------~eFy~~v~~~L~~gGilv~q~~ 223 (334)
...++..+|.+.--.....++||+||...+=... .... -|. .-|.+.+.+.|++||.++.-..
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 3456888886543322213589999998642111 0000 011 2488999999999998765443
Q ss_pred chhh-hhhHHHHHHHHHHH
Q 019882 224 SMWL-HTHLIEDMISICRE 241 (334)
Q Consensus 224 sp~~-~~~~~~~i~~tl~~ 241 (334)
+-++ .....+.+.+.|-+
T Consensus 185 ~~~L~~~~~~~~iR~~ll~ 203 (311)
T PF02384_consen 185 NGFLFSSSSEKKIRKYLLE 203 (311)
T ss_dssp HHHHHGSTHHHHHHHHHHH
T ss_pred chhhhccchHHHHHHHHHh
Confidence 3232 22223444444444
No 237
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=21.07 E-value=5.1e+02 Score=23.34 Aligned_cols=48 Identities=21% Similarity=0.122 Sum_probs=32.2
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCC
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPG 215 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~g 215 (334)
.+--...||.+.+........||||+|..-|... ..+..+.++ ...|.
T Consensus 27 ~vv~~a~~~~~~l~~~~~~~pdvvl~Dl~mP~~~-----G~e~~~~l~-~~~p~ 74 (211)
T COG2197 27 EVVGEASNGEEALDLARELKPDVVLLDLSMPGMD-----GLEALKQLR-ARGPD 74 (211)
T ss_pred EEEEEeCCHHHHHHHhhhcCCCEEEEcCCCCCCC-----hHHHHHHHH-HHCCC
Confidence 3444567788888865456899999998877532 245667777 34444
No 238
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=21.04 E-value=68 Score=26.78 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=29.8
Q ss_pred EEEECCCCCCCCC--cC--CCCHHHHHHHHHhcCCCcEEEEec
Q 019882 184 AIIVDSSDPVGPA--QE--LVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 184 vIIvD~~dp~gpa--~~--L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++|-..+++.+ -+ ....-+++.....|+++|+-+...
T Consensus 29 ~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kV 71 (120)
T cd03065 29 LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLV 71 (120)
T ss_pred eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEE
Confidence 6777877777654 44 677788999999999999877644
No 239
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=20.86 E-value=69 Score=32.02 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=35.8
Q ss_pred CCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCC
Q 019882 158 FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPG 215 (334)
Q Consensus 158 ~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~g 215 (334)
.++|+|+.+.+|++.|... .+.+|+|++|.... | ..-++++.+-|..|
T Consensus 249 ~~~~~V~h~~~d~fr~~p~--~~~vDwvVcDmve~--P------~rva~lm~~Wl~~g 296 (357)
T PRK11760 249 MDTGQVEHLRADGFKFRPP--RKNVDWLVCDMVEK--P------ARVAELMAQWLVNG 296 (357)
T ss_pred hCCCCEEEEeccCcccCCC--CCCCCEEEEecccC--H------HHHHHHHHHHHhcC
Confidence 4789999999999999754 35799999999752 1 13456777777654
No 240
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=20.65 E-value=1.3e+02 Score=27.10 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=26.0
Q ss_pred ceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCC---CcEEEEeccchhhhhhHHHHHHHHHHH
Q 019882 181 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRP---GGVLCNMAESMWLHTHLIEDMISICRE 241 (334)
Q Consensus 181 ~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~---gGilv~q~~sp~~~~~~~~~i~~tl~~ 241 (334)
.||+||+|++. .+. +.+++ +...|.+ ++++++-..... .....+..++.+++
T Consensus 113 ~yD~IIiD~pp-~~~-----~~~~l--~~~~l~~~~~~~vllV~~p~~~-s~~~~~~~l~~l~~ 167 (217)
T cd02035 113 LYDVIVFDTAP-TGH-----TLRLL--VRELLTDPERTSFRLVTLPEKL-PLYETERAITELAL 167 (217)
T ss_pred CCCEEEECCCC-chH-----HHHHH--HHHHccCCCceEEEEEeCCCcc-HHHHHHHHHHHHHH
Confidence 39999999963 211 11111 3445554 577665322221 22334555566554
No 241
>KOG2484 consensus GTPase [General function prediction only]
Probab=20.26 E-value=2.2e+02 Score=29.11 Aligned_cols=60 Identities=18% Similarity=0.331 Sum_probs=38.9
Q ss_pred ceeEEE--ECCCCCCCCCcCCCCHHHHHHHHHhcCCCc----EEEEeccchhhhhhHHHHHHHHHHHhcCCceeE
Q 019882 181 KYDAII--VDSSDPVGPAQELVEKPFFDTIAKALRPGG----VLCNMAESMWLHTHLIEDMISICRETFKGSVHY 249 (334)
Q Consensus 181 ~yDvII--vD~~dp~gpa~~L~t~eFy~~v~~~L~~gG----ilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~ 249 (334)
.-|||| +|+-||.|.-.. +.=...|..+| |||.+-.. +...+.+..++.-|+..|| .|.+
T Consensus 146 ~sDVVleVlDARDPlgtR~~-------~vE~~V~~~~gnKkLILVLNK~D-LVPrEv~e~Wl~YLr~~~p-tv~f 211 (435)
T KOG2484|consen 146 ASDVVLEVLDARDPLGTRCP-------EVEEAVLQAHGNKKLILVLNKID-LVPREVVEKWLVYLRREGP-TVAF 211 (435)
T ss_pred hhheEEEeeeccCCCCCCCh-------hHHHHHHhccCCceEEEEeehhc-cCCHHHHHHHHHHHHhhCC-ccee
Confidence 469998 899999886211 22233555667 66654321 2234667889999999999 5544
No 242
>PHA02754 hypothetical protein; Provisional
Probab=20.14 E-value=87 Score=23.27 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCCcEEEE
Q 019882 202 KPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 202 ~eFy~~v~~~L~~gGilv~ 220 (334)
.+|.+.++.+|.+-|+++-
T Consensus 17 ke~MRelkD~LSe~GiYi~ 35 (67)
T PHA02754 17 KEAMRELKDILSEAGIYID 35 (67)
T ss_pred HHHHHHHHHHHhhCceEEE
Confidence 4688899999999999984
No 243
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=20.13 E-value=2.6e+02 Score=23.62 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=26.8
Q ss_pred HHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 171 VEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 171 ~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.+.+++.. +.||+||+|.+.....+ +...-....+.+.|...-++|+.
T Consensus 90 ~~~~~~l~-~~~D~viid~~g~~~~~--~~~~~~~~dl~~~~~~~vilV~~ 137 (166)
T TIGR00347 90 SKHLRTLE-QKYDFVLVEGAGGLCVP--ITEEYTTADLIKLLQLPVILVVR 137 (166)
T ss_pred HHHHHHHH-hcCCEEEEEcCCccccC--CCCCCcHHHHHHHhCCCEEEEEC
Confidence 44444443 56999999998643322 11111234456667666666663
Done!