Query 019882
Match_columns 334
No_of_seqs 344 out of 1849
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 08:31:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o4f_A Spermidine synthase; am 100.0 1.1E-65 3.8E-70 489.1 20.7 251 48-321 6-292 (294)
2 3adn_A Spermidine synthase; am 100.0 3.1E-53 1.1E-57 403.4 17.2 246 69-321 11-292 (294)
3 2b2c_A Spermidine synthase; be 100.0 1.3E-51 4.6E-56 395.7 22.7 265 48-318 1-313 (314)
4 1iy9_A Spermidine synthase; ro 100.0 8.5E-51 2.9E-55 382.3 23.6 239 53-319 2-275 (275)
5 1xj5_A Spermidine synthase 1; 100.0 3.3E-50 1.1E-54 389.1 26.6 265 41-321 33-332 (334)
6 2o07_A Spermidine synthase; st 100.0 1.9E-50 6.4E-55 385.7 23.8 255 46-320 13-302 (304)
7 2i7c_A Spermidine synthase; tr 100.0 4.3E-50 1.5E-54 378.7 25.4 244 53-319 3-281 (283)
8 1inl_A Spermidine synthase; be 100.0 5.4E-49 1.8E-53 373.7 23.9 256 39-320 3-295 (296)
9 2pt6_A Spermidine synthase; tr 100.0 4E-48 1.4E-52 372.1 24.5 252 45-320 33-320 (321)
10 1uir_A Polyamine aminopropyltr 100.0 6.5E-47 2.2E-51 362.1 24.7 250 52-324 3-292 (314)
11 3bwc_A Spermidine synthase; SA 100.0 5.3E-47 1.8E-51 361.0 23.3 254 46-319 10-302 (304)
12 1mjf_A Spermidine synthase; sp 100.0 1.1E-46 3.7E-51 354.9 21.2 238 52-320 1-280 (281)
13 2cmg_A Spermidine synthase; tr 100.0 1.9E-45 6.5E-50 344.4 16.8 225 54-321 1-259 (262)
14 3c6k_A Spermine synthase; sper 100.0 8.6E-45 2.9E-49 355.4 16.3 194 75-273 137-381 (381)
15 2qfm_A Spermine synthase; sper 100.0 1.7E-39 5.7E-44 316.7 19.3 193 74-271 119-362 (364)
16 3gjy_A Spermidine synthase; AP 100.0 2E-27 6.9E-32 228.3 17.9 203 95-307 29-282 (317)
17 2qy6_A UPF0209 protein YFCK; s 98.1 4.3E-06 1.5E-10 77.5 6.6 94 161-270 150-247 (257)
18 3c3y_A Pfomt, O-methyltransfer 98.1 1.1E-05 3.7E-10 73.0 8.8 125 115-270 95-236 (237)
19 3dr5_A Putative O-methyltransf 98.0 4E-05 1.4E-09 68.8 10.4 81 115-220 81-161 (221)
20 1sui_A Caffeoyl-COA O-methyltr 97.9 2E-05 6.9E-10 71.9 8.2 125 115-270 104-246 (247)
21 3vyw_A MNMC2; tRNA wobble urid 97.9 3.4E-05 1.2E-09 73.5 9.8 97 159-271 162-261 (308)
22 3tfw_A Putative O-methyltransf 97.8 7E-05 2.4E-09 67.9 9.3 110 147-270 104-225 (248)
23 3duw_A OMT, O-methyltransferas 97.7 6E-05 2E-09 66.4 7.3 110 147-270 99-222 (223)
24 3r3h_A O-methyltransferase, SA 97.5 0.00014 4.8E-09 66.0 7.2 106 147-270 101-220 (242)
25 3c3p_A Methyltransferase; NP_9 97.5 7.2E-05 2.5E-09 65.5 4.9 108 146-270 96-209 (210)
26 3ntv_A MW1564 protein; rossman 97.5 0.00018 6E-09 64.4 7.3 64 146-220 110-174 (232)
27 3cbg_A O-methyltransferase; cy 97.3 0.00037 1.3E-08 62.4 7.1 109 146-269 112-231 (232)
28 2avd_A Catechol-O-methyltransf 97.3 0.00054 1.9E-08 60.3 7.6 65 146-220 109-177 (229)
29 3dxy_A TRNA (guanine-N(7)-)-me 97.1 0.00099 3.4E-08 59.4 7.9 77 161-241 84-165 (218)
30 2hnk_A SAM-dependent O-methylt 97.1 0.00046 1.6E-08 61.7 5.4 109 147-270 101-231 (239)
31 3tr6_A O-methyltransferase; ce 97.1 0.0006 2E-08 59.9 5.9 64 147-220 105-172 (225)
32 3orh_A Guanidinoacetate N-meth 97.1 0.00034 1.2E-08 63.0 4.4 62 159-220 106-168 (236)
33 1yzh_A TRNA (guanine-N(7)-)-me 97.0 0.0016 5.5E-08 57.0 7.5 77 161-241 91-171 (214)
34 2igt_A SAM dependent methyltra 96.9 0.0021 7.3E-08 61.2 8.5 80 158-237 200-288 (332)
35 2frn_A Hypothetical protein PH 96.9 0.0016 5.6E-08 60.0 7.3 94 161-266 175-271 (278)
36 3cvo_A Methyltransferase-like 96.8 0.0026 9E-08 56.8 7.3 79 115-220 51-152 (202)
37 2fca_A TRNA (guanine-N(7)-)-me 96.8 0.0046 1.6E-07 54.5 8.7 64 161-224 88-155 (213)
38 1zx0_A Guanidinoacetate N-meth 96.7 0.0065 2.2E-07 53.9 9.3 61 161-221 108-169 (236)
39 3p9n_A Possible methyltransfer 96.6 0.0045 1.5E-07 52.9 7.3 61 161-224 93-155 (189)
40 2wk1_A NOVP; transferase, O-me 96.6 0.0013 4.5E-08 61.7 4.1 67 146-220 176-242 (282)
41 2b78_A Hypothetical protein SM 96.5 0.0032 1.1E-07 61.1 6.0 83 158-244 260-350 (385)
42 3u81_A Catechol O-methyltransf 96.4 0.0023 8E-08 56.3 4.5 67 147-221 99-169 (221)
43 3ckk_A TRNA (guanine-N(7)-)-me 96.4 0.0041 1.4E-07 56.1 5.8 66 160-225 101-171 (235)
44 2bm8_A Cephalosporin hydroxyla 96.3 0.0047 1.6E-07 55.6 5.7 56 160-222 129-187 (236)
45 3pvc_A TRNA 5-methylaminomethy 96.3 0.0057 2E-07 63.4 7.0 65 158-223 143-212 (689)
46 3ps9_A TRNA 5-methylaminomethy 96.3 0.0046 1.6E-07 63.8 6.2 62 161-223 156-220 (676)
47 1xdz_A Methyltransferase GIDB; 96.2 0.024 8.1E-07 50.5 10.0 98 161-270 120-219 (240)
48 1dus_A MJ0882; hypothetical pr 96.1 0.012 4.1E-07 49.3 7.1 80 158-248 99-178 (194)
49 3lpm_A Putative methyltransfer 96.1 0.021 7.1E-07 51.5 9.1 77 160-241 98-190 (259)
50 3mb5_A SAM-dependent methyltra 96.1 0.0054 1.9E-07 54.8 4.8 72 160-248 144-218 (255)
51 2b25_A Hypothetical protein; s 96.0 0.0042 1.4E-07 58.4 4.0 68 161-241 167-234 (336)
52 2vdv_E TRNA (guanine-N(7)-)-me 96.0 0.012 4E-07 52.8 6.6 64 161-224 107-175 (246)
53 1boo_A Protein (N-4 cytosine-s 95.9 0.0085 2.9E-07 56.7 5.8 67 158-224 10-86 (323)
54 3c0k_A UPF0064 protein YCCW; P 95.9 0.017 5.7E-07 55.9 7.8 81 162-242 272-360 (396)
55 4dmg_A Putative uncharacterize 95.9 0.013 4.5E-07 57.2 7.0 72 164-236 264-340 (393)
56 2yvl_A TRMI protein, hypotheti 95.8 0.015 5.1E-07 51.4 6.7 54 160-224 139-192 (248)
57 4dzr_A Protein-(glutamine-N5) 95.8 0.0071 2.4E-07 51.7 4.4 101 162-270 80-205 (215)
58 3e05_A Precorrin-6Y C5,15-meth 95.8 0.016 5.5E-07 49.9 6.6 69 161-242 90-158 (204)
59 1wxx_A TT1595, hypothetical pr 95.7 0.014 4.8E-07 56.2 6.6 81 162-242 258-346 (382)
60 2pwy_A TRNA (adenine-N(1)-)-me 95.7 0.014 4.8E-07 51.8 6.0 70 160-244 147-217 (258)
61 2gpy_A O-methyltransferase; st 95.7 0.004 1.4E-07 55.1 2.2 65 147-221 94-159 (233)
62 2ift_A Putative methylase HI07 95.7 0.0089 3E-07 52.1 4.3 58 161-223 104-164 (201)
63 1g8a_A Fibrillarin-like PRE-rR 95.6 0.03 1E-06 49.0 7.7 54 161-221 122-177 (227)
64 1eg2_A Modification methylase 95.6 0.016 5.4E-07 55.0 6.1 66 159-224 35-108 (319)
65 1l3i_A Precorrin-6Y methyltran 95.6 0.035 1.2E-06 46.3 7.7 71 161-244 82-153 (192)
66 3hm2_A Precorrin-6Y C5,15-meth 95.6 0.025 8.5E-07 47.0 6.7 53 161-223 76-128 (178)
67 3a27_A TYW2, uncharacterized p 95.5 0.04 1.4E-06 50.5 8.6 94 161-265 169-264 (272)
68 1g60_A Adenine-specific methyl 95.5 0.023 7.8E-07 51.8 6.7 61 162-222 4-74 (260)
69 2zig_A TTHA0409, putative modi 95.5 0.023 7.7E-07 52.9 6.7 65 159-223 18-98 (297)
70 3njr_A Precorrin-6Y methylase; 95.5 0.036 1.2E-06 48.4 7.6 66 162-242 105-170 (204)
71 2oo3_A Protein involved in cat 95.5 0.024 8.1E-07 53.2 6.7 74 160-243 136-217 (283)
72 3v97_A Ribosomal RNA large sub 95.4 0.022 7.5E-07 59.7 7.2 67 157-224 586-659 (703)
73 3eey_A Putative rRNA methylase 95.4 0.031 1.1E-06 47.6 7.0 61 160-221 73-138 (197)
74 2yx1_A Hypothetical protein MJ 95.4 0.025 8.5E-07 53.6 6.8 52 161-225 243-294 (336)
75 3k6r_A Putative transferase PH 95.4 0.033 1.1E-06 51.9 7.4 95 160-266 174-271 (278)
76 3dou_A Ribosomal RNA large sub 95.4 0.017 5.7E-07 50.3 5.1 101 161-269 62-180 (191)
77 1ej0_A FTSJ; methyltransferase 95.4 0.014 4.7E-07 47.8 4.3 80 161-244 62-154 (180)
78 3fpf_A Mtnas, putative unchara 95.3 0.017 5.8E-07 54.6 5.2 110 146-276 161-270 (298)
79 2fhp_A Methylase, putative; al 95.3 0.012 4.1E-07 49.4 3.7 60 160-224 93-156 (187)
80 2as0_A Hypothetical protein PH 95.2 0.019 6.3E-07 55.5 5.4 74 162-235 268-348 (396)
81 2esr_A Methyltransferase; stru 95.2 0.0091 3.1E-07 50.1 2.9 58 161-224 81-140 (177)
82 3evz_A Methyltransferase; NYSG 95.2 0.018 6.1E-07 50.4 4.8 77 162-242 105-196 (230)
83 2ozv_A Hypothetical protein AT 95.2 0.057 1.9E-06 49.0 8.3 79 161-244 90-187 (260)
84 2fpo_A Methylase YHHF; structu 95.1 0.026 8.8E-07 49.1 5.6 57 161-223 103-161 (202)
85 4hg2_A Methyltransferase type 95.1 0.025 8.6E-07 51.7 5.7 58 159-223 79-136 (257)
86 3axs_A Probable N(2),N(2)-dime 95.1 0.022 7.5E-07 55.7 5.4 53 161-222 104-158 (392)
87 1o54_A SAM-dependent O-methylt 95.0 0.014 4.6E-07 53.2 3.6 65 161-241 164-228 (277)
88 3dli_A Methyltransferase; PSI- 94.9 0.034 1.2E-06 49.0 5.9 57 163-224 83-142 (240)
89 3g89_A Ribosomal RNA small sub 94.8 0.086 2.9E-06 47.7 8.4 97 162-270 131-229 (249)
90 2qm3_A Predicted methyltransfe 94.7 0.012 4.3E-07 56.4 2.4 62 146-216 210-271 (373)
91 1i9g_A Hypothetical protein RV 94.6 0.024 8.3E-07 51.2 4.2 67 160-241 152-218 (280)
92 3mti_A RRNA methylase; SAM-dep 94.5 0.1 3.6E-06 43.8 7.7 60 161-221 70-134 (185)
93 1yb2_A Hypothetical protein TA 94.5 0.02 6.7E-07 52.2 3.2 69 160-244 161-230 (275)
94 1ws6_A Methyltransferase; stru 94.5 0.022 7.7E-07 46.9 3.3 56 162-223 89-148 (171)
95 3tos_A CALS11; methyltransfera 94.4 0.047 1.6E-06 50.5 5.5 89 160-260 157-250 (257)
96 3ajd_A Putative methyltransfer 94.3 0.092 3.1E-06 47.9 7.4 65 161-225 134-214 (274)
97 3hem_A Cyclopropane-fatty-acyl 94.3 0.05 1.7E-06 49.9 5.5 58 160-222 121-183 (302)
98 2dul_A N(2),N(2)-dimethylguano 94.2 0.058 2E-06 52.3 6.0 50 163-221 114-163 (378)
99 3sm3_A SAM-dependent methyltra 94.2 0.12 4E-06 44.7 7.4 55 160-221 82-140 (235)
100 2p41_A Type II methyltransfera 94.1 0.059 2E-06 50.6 5.7 79 160-244 130-211 (305)
101 3jwg_A HEN1, methyltransferase 94.0 0.081 2.8E-06 45.8 6.0 54 161-221 84-140 (219)
102 1nt2_A Fibrillarin-like PRE-rR 93.9 0.12 4.1E-06 45.4 7.1 54 161-221 105-160 (210)
103 1jsx_A Glucose-inhibited divis 93.8 0.048 1.6E-06 46.7 4.1 52 161-223 115-166 (207)
104 2plw_A Ribosomal RNA methyltra 93.8 0.039 1.3E-06 47.0 3.5 62 179-244 104-172 (201)
105 2ipx_A RRNA 2'-O-methyltransfe 93.8 0.029 9.8E-07 49.5 2.6 54 161-221 126-181 (233)
106 3m4x_A NOL1/NOP2/SUN family pr 93.6 0.093 3.2E-06 52.2 6.4 63 161-224 156-236 (456)
107 3e8s_A Putative SAM dependent 93.6 0.2 6.9E-06 42.8 7.8 58 161-223 94-153 (227)
108 2nyu_A Putative ribosomal RNA 93.6 0.039 1.3E-06 46.8 3.1 79 161-244 70-163 (196)
109 1ixk_A Methyltransferase; open 93.6 0.11 3.8E-06 48.6 6.5 62 161-224 169-248 (315)
110 3e23_A Uncharacterized protein 93.5 0.097 3.3E-06 44.9 5.5 99 162-269 86-201 (211)
111 3jwh_A HEN1; methyltransferase 93.4 0.15 5E-06 44.1 6.6 54 161-221 84-140 (217)
112 3ofk_A Nodulation protein S; N 93.4 0.078 2.7E-06 45.7 4.8 77 160-244 96-181 (216)
113 4htf_A S-adenosylmethionine-de 93.3 0.05 1.7E-06 49.3 3.6 58 161-223 117-174 (285)
114 3i9f_A Putative type 11 methyl 93.3 0.29 1E-05 40.3 8.1 53 160-221 59-111 (170)
115 3lbf_A Protein-L-isoaspartate 93.3 0.055 1.9E-06 46.5 3.7 52 161-224 125-176 (210)
116 3sso_A Methyltransferase; macr 93.2 0.02 6.8E-07 56.5 0.7 57 159-220 262-322 (419)
117 2ex4_A Adrenal gland protein A 93.2 0.063 2.1E-06 47.4 4.0 105 146-261 117-232 (241)
118 3ou2_A SAM-dependent methyltra 93.1 0.047 1.6E-06 46.8 2.9 54 161-222 90-146 (218)
119 3dh0_A SAM dependent methyltra 92.9 0.2 6.9E-06 43.0 6.7 97 161-270 88-193 (219)
120 3m6w_A RRNA methylase; rRNA me 92.9 0.14 4.8E-06 51.1 6.4 61 163-224 153-231 (464)
121 4fzv_A Putative methyltransfer 92.9 0.27 9.2E-06 47.4 8.2 82 160-242 203-306 (359)
122 4dcm_A Ribosomal RNA large sub 92.8 0.1 3.4E-06 50.4 5.1 59 161-222 275-334 (375)
123 3dmg_A Probable ribosomal RNA 92.6 0.092 3.1E-06 50.8 4.5 77 162-248 281-358 (381)
124 3ocj_A Putative exported prote 92.5 0.14 4.8E-06 47.0 5.5 55 160-222 169-227 (305)
125 2xyq_A Putative 2'-O-methyl tr 92.5 0.069 2.4E-06 50.0 3.3 76 161-244 105-190 (290)
126 2ld4_A Anamorsin; methyltransf 92.5 0.13 4.4E-06 43.0 4.7 77 162-243 43-128 (176)
127 3f4k_A Putative methyltransfer 92.4 0.095 3.2E-06 46.3 3.9 56 160-222 95-150 (257)
128 3cgg_A SAM-dependent methyltra 92.4 0.11 3.8E-06 43.3 4.1 58 161-222 89-147 (195)
129 1r18_A Protein-L-isoaspartate( 92.3 0.09 3.1E-06 46.0 3.7 52 160-223 144-195 (227)
130 2yxl_A PH0851 protein, 450AA l 92.2 0.12 4E-06 51.0 4.8 64 161-224 310-391 (450)
131 3kkz_A Uncharacterized protein 92.1 0.08 2.7E-06 47.4 3.1 56 160-222 95-150 (267)
132 3thr_A Glycine N-methyltransfe 91.9 0.18 6.2E-06 45.5 5.3 58 161-224 109-177 (293)
133 2yxd_A Probable cobalt-precorr 91.9 0.65 2.2E-05 38.1 8.3 65 161-242 83-147 (183)
134 3dlc_A Putative S-adenosyl-L-m 91.8 0.15 5.3E-06 43.3 4.5 56 160-221 92-147 (219)
135 2ih2_A Modification methylase 91.7 0.3 1E-05 46.6 6.9 77 161-242 81-184 (421)
136 2frx_A Hypothetical protein YE 91.7 0.21 7.2E-06 49.8 6.0 63 161-224 168-248 (479)
137 1dl5_A Protein-L-isoaspartate 91.7 0.11 3.8E-06 48.3 3.8 52 161-224 126-177 (317)
138 2pbf_A Protein-L-isoaspartate 91.7 0.081 2.8E-06 46.1 2.6 51 160-222 139-193 (227)
139 1fbn_A MJ fibrillarin homologu 91.6 0.088 3E-06 46.4 2.8 53 161-220 122-176 (230)
140 2oxt_A Nucleoside-2'-O-methylt 91.5 0.18 6E-06 46.3 4.7 75 162-244 123-205 (265)
141 1sqg_A SUN protein, FMU protei 91.4 0.2 6.8E-06 48.9 5.3 63 162-224 296-376 (429)
142 2p7i_A Hypothetical protein; p 91.3 0.13 4.3E-06 44.7 3.4 54 162-223 87-142 (250)
143 3h2b_A SAM-dependent methyltra 91.2 0.18 6.2E-06 42.9 4.3 58 161-222 84-141 (203)
144 2pxx_A Uncharacterized protein 91.2 0.059 2E-06 45.9 1.2 62 160-223 88-160 (215)
145 3g5l_A Putative S-adenosylmeth 91.1 0.16 5.4E-06 44.9 3.9 61 160-226 89-149 (253)
146 3id6_C Fibrillarin-like rRNA/T 90.9 0.14 4.9E-06 46.2 3.5 78 161-244 125-209 (232)
147 3q7e_A Protein arginine N-meth 90.7 0.14 4.8E-06 48.5 3.4 60 160-222 114-173 (349)
148 2f8l_A Hypothetical protein LM 90.5 0.34 1.2E-05 45.5 5.8 78 162-242 185-276 (344)
149 4fsd_A Arsenic methyltransfera 90.5 0.17 6E-06 48.4 3.8 60 158-221 139-202 (383)
150 2fyt_A Protein arginine N-meth 90.5 0.15 5.3E-06 48.1 3.4 57 160-219 112-168 (340)
151 2wa2_A Non-structural protein 90.4 0.26 8.9E-06 45.5 4.9 79 162-248 131-216 (276)
152 3hnr_A Probable methyltransfer 90.4 0.19 6.7E-06 43.1 3.7 53 161-221 89-144 (220)
153 3tma_A Methyltransferase; thum 90.3 0.26 8.8E-06 46.5 4.8 61 162-224 255-319 (354)
154 2b3t_A Protein methyltransfera 90.2 0.3 1E-05 44.2 5.1 94 161-268 159-274 (276)
155 1nkv_A Hypothetical protein YJ 90.2 0.11 3.8E-06 45.8 2.1 55 160-221 85-139 (256)
156 3mgg_A Methyltransferase; NYSG 90.2 0.12 4.2E-06 46.2 2.4 56 161-222 87-142 (276)
157 3bus_A REBM, methyltransferase 90.2 0.24 8.1E-06 44.2 4.3 56 160-222 110-166 (273)
158 2zfu_A Nucleomethylin, cerebra 90.1 0.53 1.8E-05 40.3 6.4 93 162-271 98-192 (215)
159 2nxc_A L11 mtase, ribosomal pr 90.1 0.72 2.5E-05 41.4 7.5 84 163-268 169-253 (254)
160 3g2m_A PCZA361.24; SAM-depende 90.1 0.089 3.1E-06 48.1 1.4 57 161-225 133-193 (299)
161 1o9g_A RRNA methyltransferase; 90.0 0.12 4.1E-06 46.0 2.1 54 165-220 149-212 (250)
162 2xvm_A Tellurite resistance pr 90.0 0.13 4.4E-06 43.3 2.2 55 161-220 80-134 (199)
163 3m33_A Uncharacterized protein 90.0 0.06 2.1E-06 47.2 0.1 50 160-219 90-139 (226)
164 2gb4_A Thiopurine S-methyltran 90.0 0.29 9.8E-06 44.4 4.7 56 160-219 132-188 (252)
165 3r0q_C Probable protein argini 89.9 0.15 5.2E-06 48.9 2.9 59 160-222 111-169 (376)
166 3dtn_A Putative methyltransfer 89.8 0.3 1E-05 42.4 4.5 53 161-221 92-147 (234)
167 2yxe_A Protein-L-isoaspartate 89.8 0.2 6.9E-06 43.0 3.4 51 161-223 128-178 (215)
168 3ujc_A Phosphoethanolamine N-m 89.8 0.15 5E-06 45.0 2.5 57 161-222 102-159 (266)
169 2gs9_A Hypothetical protein TT 89.7 0.19 6.5E-06 43.0 3.1 56 161-222 77-132 (211)
170 3bkw_A MLL3908 protein, S-aden 89.7 0.22 7.7E-06 43.3 3.6 59 161-225 89-147 (243)
171 1kpg_A CFA synthase;, cyclopro 89.7 0.27 9.3E-06 44.3 4.3 55 160-222 113-168 (287)
172 3l8d_A Methyltransferase; stru 89.6 0.26 8.9E-06 42.9 3.9 58 159-222 96-153 (242)
173 1i1n_A Protein-L-isoaspartate 89.6 0.21 7.3E-06 43.3 3.4 51 160-222 132-182 (226)
174 2o57_A Putative sarcosine dime 89.5 0.21 7.3E-06 45.2 3.4 56 160-222 131-187 (297)
175 1vl5_A Unknown conserved prote 89.3 0.19 6.6E-06 44.6 3.0 55 161-221 85-139 (260)
176 2pjd_A Ribosomal RNA small sub 89.3 0.18 6.2E-06 47.5 2.9 58 161-222 245-303 (343)
177 2p35_A Trans-aconitate 2-methy 89.3 0.14 4.9E-06 45.1 2.1 55 161-222 78-132 (259)
178 1ve3_A Hypothetical protein PH 89.2 0.13 4.6E-06 44.2 1.7 58 161-222 85-142 (227)
179 4gek_A TRNA (CMO5U34)-methyltr 88.8 0.46 1.6E-05 43.2 5.2 55 160-220 122-176 (261)
180 2yqz_A Hypothetical protein TT 88.7 0.2 7E-06 44.1 2.7 56 160-221 85-140 (263)
181 2fk8_A Methoxy mycolic acid sy 88.5 0.43 1.5E-05 43.8 4.8 55 160-222 139-194 (318)
182 3vc1_A Geranyl diphosphate 2-C 88.5 0.21 7E-06 46.1 2.6 56 160-222 166-221 (312)
183 2kw5_A SLR1183 protein; struct 88.5 0.27 9.2E-06 41.7 3.2 55 161-221 76-130 (202)
184 3gu3_A Methyltransferase; alph 88.4 0.19 6.4E-06 45.7 2.2 56 161-223 72-127 (284)
185 3lcc_A Putative methyl chlorid 88.4 0.22 7.4E-06 43.5 2.6 56 161-221 115-170 (235)
186 1ri5_A MRNA capping enzyme; me 88.1 0.1 3.5E-06 46.9 0.3 63 161-224 114-176 (298)
187 3d2l_A SAM-dependent methyltra 88.1 0.14 4.6E-06 44.7 1.0 58 161-225 79-140 (243)
188 3gdh_A Trimethylguanosine synt 88.1 0.048 1.6E-06 48.0 -2.0 52 161-220 127-179 (241)
189 3ccf_A Cyclopropane-fatty-acyl 88.1 0.32 1.1E-05 43.8 3.6 55 161-222 100-154 (279)
190 3pfg_A N-methyltransferase; N, 87.9 0.1 3.5E-06 46.5 0.1 54 161-221 93-150 (263)
191 1g6q_1 HnRNP arginine N-methyl 87.9 0.29 9.9E-06 45.9 3.2 58 160-220 86-143 (328)
192 4df3_A Fibrillarin-like rRNA/T 87.8 0.38 1.3E-05 43.5 3.8 80 159-244 124-210 (233)
193 1vbf_A 231AA long hypothetical 87.7 0.33 1.1E-05 42.2 3.3 49 162-222 117-165 (231)
194 3m70_A Tellurite resistance pr 87.7 0.23 7.9E-06 44.8 2.3 54 162-220 168-221 (286)
195 3g5t_A Trans-aconitate 3-methy 87.7 0.26 9E-06 44.9 2.8 56 160-220 88-147 (299)
196 2y1w_A Histone-arginine methyl 87.6 0.25 8.5E-06 46.7 2.6 58 160-222 98-155 (348)
197 3g07_A 7SK snRNA methylphospha 87.5 0.32 1.1E-05 44.6 3.2 62 161-222 154-220 (292)
198 1xtp_A LMAJ004091AAA; SGPP, st 87.3 0.31 1.1E-05 42.7 2.9 55 161-222 140-197 (254)
199 1xxl_A YCGJ protein; structura 87.2 0.3 1E-05 43.0 2.7 55 161-221 69-123 (239)
200 3bt7_A TRNA (uracil-5-)-methyl 86.8 0.72 2.5E-05 43.9 5.4 56 161-226 261-330 (369)
201 1jg1_A PIMT;, protein-L-isoasp 86.5 0.43 1.5E-05 41.9 3.4 52 161-224 140-191 (235)
202 3cc8_A Putative methyltransfer 86.4 0.24 8.3E-06 42.4 1.7 56 164-223 76-131 (230)
203 3bxo_A N,N-dimethyltransferase 86.1 0.17 5.8E-06 44.0 0.5 54 161-221 83-140 (239)
204 3q87_B N6 adenine specific DNA 85.8 0.94 3.2E-05 37.8 5.0 77 160-244 60-142 (170)
205 1wy7_A Hypothetical protein PH 85.4 2.7 9.3E-05 35.5 7.9 51 162-221 98-148 (207)
206 1nv8_A HEMK protein; class I a 85.4 0.85 2.9E-05 41.9 4.9 59 161-223 173-250 (284)
207 2p8j_A S-adenosylmethionine-de 85.4 0.41 1.4E-05 40.6 2.6 55 161-222 71-128 (209)
208 3grz_A L11 mtase, ribosomal pr 85.3 0.18 6.1E-06 43.1 0.2 48 163-221 111-158 (205)
209 1y8c_A S-adenosylmethionine-de 84.7 0.2 7E-06 43.4 0.3 60 162-225 85-145 (246)
210 3ggd_A SAM-dependent methyltra 84.6 0.49 1.7E-05 41.4 2.8 59 160-220 100-161 (245)
211 2vdw_A Vaccinia virus capping 84.3 0.84 2.9E-05 42.4 4.4 60 163-224 105-171 (302)
212 2aot_A HMT, histamine N-methyl 84.0 1.3 4.3E-05 40.2 5.4 56 162-222 112-172 (292)
213 3bgv_A MRNA CAP guanine-N7 met 83.6 0.24 8.2E-06 45.6 0.3 60 161-222 90-155 (313)
214 1p91_A Ribosomal RNA large sub 83.6 0.28 9.5E-06 43.8 0.7 50 161-223 130-179 (269)
215 1vlm_A SAM-dependent methyltra 83.3 0.53 1.8E-05 40.7 2.4 55 162-222 85-139 (219)
216 3lst_A CALO1 methyltransferase 81.8 1.5 5.1E-05 41.0 5.1 54 160-220 231-284 (348)
217 1wzn_A SAM-dependent methyltra 81.7 0.56 1.9E-05 41.2 1.9 58 161-222 88-145 (252)
218 3evf_A RNA-directed RNA polyme 81.7 1.8 6.2E-05 40.3 5.4 86 179-272 138-229 (277)
219 3i53_A O-methyltransferase; CO 81.5 0.84 2.9E-05 42.3 3.2 52 160-221 218-273 (332)
220 4hc4_A Protein arginine N-meth 81.0 0.89 3E-05 44.0 3.2 57 160-220 131-187 (376)
221 2ip2_A Probable phenazine-spec 80.9 0.97 3.3E-05 41.7 3.4 56 160-221 216-271 (334)
222 1pjz_A Thiopurine S-methyltran 80.8 0.58 2E-05 40.4 1.7 54 160-217 81-135 (203)
223 2qe6_A Uncharacterized protein 79.9 5 0.00017 36.4 7.8 61 160-222 127-196 (274)
224 1ne2_A Hypothetical protein TA 79.7 3.9 0.00013 34.4 6.6 51 162-221 96-146 (200)
225 3kr9_A SAM-dependent methyltra 79.0 0.98 3.3E-05 40.6 2.6 55 161-223 66-120 (225)
226 2km1_A Protein DRE2; yeast, an 78.9 1.5 5.2E-05 36.6 3.6 58 161-220 38-96 (136)
227 3gwz_A MMCR; methyltransferase 77.9 2.9 9.9E-05 39.5 5.7 51 160-220 251-305 (369)
228 2jjq_A Uncharacterized RNA met 77.6 2.1 7.1E-05 41.9 4.7 49 163-222 339-387 (425)
229 2avn_A Ubiquinone/menaquinone 77.5 0.75 2.6E-05 40.9 1.4 57 165-226 100-156 (260)
230 2i62_A Nicotinamide N-methyltr 76.8 0.27 9.4E-06 43.3 -1.7 59 163-221 136-197 (265)
231 3bkx_A SAM-dependent methyltra 76.0 1.9 6.6E-05 38.1 3.7 56 161-222 101-159 (275)
232 2okc_A Type I restriction enzy 75.9 2.8 9.6E-05 40.8 5.1 58 162-222 237-307 (445)
233 4e2x_A TCAB9; kijanose, tetron 75.9 3.9 0.00013 38.9 6.1 39 179-222 169-208 (416)
234 3lec_A NADB-rossmann superfami 75.8 1.4 4.7E-05 39.8 2.6 55 160-222 71-125 (230)
235 3r24_A NSP16, 2'-O-methyl tran 75.8 1.8 6.1E-05 41.1 3.4 110 146-269 130-256 (344)
236 2px2_A Genome polyprotein [con 75.1 4.1 0.00014 37.7 5.6 74 168-248 129-206 (269)
237 3dp7_A SAM-dependent methyltra 75.0 0.51 1.8E-05 44.6 -0.5 57 161-220 229-285 (363)
238 3b3j_A Histone-arginine methyl 73.7 0.5 1.7E-05 47.1 -1.0 57 161-222 207-263 (480)
239 3mcz_A O-methyltransferase; ad 73.1 2.2 7.4E-05 39.6 3.3 53 161-220 229-285 (352)
240 1tw3_A COMT, carminomycin 4-O- 73.0 2.6 9E-05 39.2 4.0 54 161-220 233-286 (360)
241 2ar0_A M.ecoki, type I restric 72.8 4.1 0.00014 41.1 5.5 81 162-243 243-334 (541)
242 2g72_A Phenylethanolamine N-me 72.8 0.41 1.4E-05 43.3 -1.7 58 163-221 152-214 (289)
243 3trk_A Nonstructural polyprote 72.2 5.7 0.0002 37.0 5.8 60 180-249 210-283 (324)
244 3gcz_A Polyprotein; flavivirus 72.1 2.3 7.9E-05 39.7 3.2 87 178-272 153-246 (282)
245 3hp7_A Hemolysin, putative; st 71.6 3.2 0.00011 38.7 4.1 56 159-221 127-184 (291)
246 2oyr_A UPF0341 protein YHIQ; a 71.2 3.5 0.00012 37.6 4.2 32 161-193 145-176 (258)
247 3gnl_A Uncharacterized protein 71.1 2.1 7E-05 39.0 2.6 55 160-222 71-125 (244)
248 2r3s_A Uncharacterized protein 70.2 1.2 4E-05 41.0 0.8 54 161-220 215-269 (335)
249 2h00_A Methyltransferase 10 do 69.3 0.79 2.7E-05 40.5 -0.6 30 160-189 115-148 (254)
250 3mq2_A 16S rRNA methyltransfer 69.3 2.3 7.9E-05 36.4 2.4 59 161-222 81-140 (218)
251 3eld_A Methyltransferase; flav 69.2 6.8 0.00023 36.8 5.7 88 179-272 145-236 (300)
252 3ege_A Putative methyltransfer 68.8 3 0.0001 36.9 3.2 54 160-220 75-128 (261)
253 4gqb_A Protein arginine N-meth 68.7 1.4 4.8E-05 45.6 1.1 55 160-219 410-464 (637)
254 3bzb_A Uncharacterized protein 67.7 7.4 0.00025 35.1 5.6 55 161-220 139-203 (281)
255 1u2z_A Histone-lysine N-methyl 67.5 2.6 8.8E-05 41.6 2.6 55 161-221 301-358 (433)
256 1fp1_D Isoliquiritigenin 2'-O- 67.3 3.4 0.00012 38.9 3.4 55 160-221 251-305 (372)
257 1qzz_A RDMB, aclacinomycin-10- 67.3 2.6 8.8E-05 39.4 2.5 51 161-220 232-285 (374)
258 3p2e_A 16S rRNA methylase; met 66.5 0.95 3.3E-05 40.0 -0.7 59 161-220 78-137 (225)
259 3uwp_A Histone-lysine N-methyl 65.4 3.8 0.00013 40.5 3.4 56 160-220 231-286 (438)
260 3ua3_A Protein arginine N-meth 64.7 5.6 0.00019 41.8 4.6 59 160-220 471-532 (745)
261 2b9e_A NOL1/NOP2/SUN domain fa 64.4 6.4 0.00022 36.6 4.6 63 161-224 153-236 (309)
262 1af7_A Chemotaxis receptor met 63.3 5.1 0.00018 36.7 3.7 56 161-220 194-250 (274)
263 3tm4_A TRNA (guanine N2-)-meth 61.6 11 0.00037 35.7 5.7 90 161-269 268-365 (373)
264 3p9c_A Caffeic acid O-methyltr 61.5 3.2 0.00011 39.2 2.0 54 160-220 243-296 (364)
265 2hwk_A Helicase NSP2; rossman 61.1 12 0.00041 35.2 5.6 81 180-269 205-296 (320)
266 1x19_A CRTF-related protein; m 60.8 6.9 0.00024 36.4 4.1 55 160-220 239-293 (359)
267 2r6z_A UPF0341 protein in RSP 60.7 3.8 0.00013 37.1 2.2 30 161-190 139-170 (258)
268 3iv6_A Putative Zn-dependent a 60.3 8.5 0.00029 35.0 4.5 40 180-225 109-151 (261)
269 3htx_A HEN1; HEN1, small RNA m 60.2 6.8 0.00023 42.2 4.3 52 161-220 778-832 (950)
270 4gua_A Non-structural polyprot 59.8 16 0.00053 37.5 6.6 66 179-257 219-298 (670)
271 1uwv_A 23S rRNA (uracil-5-)-me 59.7 13 0.00043 36.1 5.9 54 161-222 334-389 (433)
272 3khk_A Type I restriction-modi 58.2 5.4 0.00019 40.2 3.1 82 162-244 311-419 (544)
273 4a6d_A Hydroxyindole O-methylt 57.1 7 0.00024 36.7 3.5 55 160-220 227-281 (353)
274 3opn_A Putative hemolysin; str 56.3 29 0.001 30.4 7.3 34 181-221 103-136 (232)
275 3reo_A (ISO)eugenol O-methyltr 56.2 13 0.00045 34.9 5.2 54 160-220 245-298 (368)
276 3eod_A Protein HNR; response r 55.8 44 0.0015 24.9 7.5 50 166-220 36-85 (130)
277 3ll7_A Putative methyltransfer 50.3 2.6 8.7E-05 41.3 -0.8 33 161-193 143-175 (410)
278 4e7p_A Response regulator; DNA 48.8 54 0.0018 25.4 7.1 49 166-220 51-99 (150)
279 3or8_A Transcription elongatio 46.5 25 0.00086 30.9 5.1 43 78-127 41-88 (197)
280 3ldg_A Putative uncharacterize 46.5 15 0.00052 35.2 4.0 60 161-223 283-344 (384)
281 3lkd_A Type I restriction-modi 45.9 37 0.0013 34.1 6.9 84 160-244 275-381 (542)
282 3lua_A Response regulator rece 45.4 42 0.0014 25.5 5.9 53 162-220 31-87 (140)
283 1qkk_A DCTD, C4-dicarboxylate 45.2 96 0.0033 23.9 8.2 50 166-220 32-81 (155)
284 2qr3_A Two-component system re 44.5 55 0.0019 24.6 6.4 49 169-220 38-86 (140)
285 3kht_A Response regulator; PSI 44.4 50 0.0017 25.2 6.3 41 165-210 35-75 (144)
286 1fp2_A Isoflavone O-methyltran 43.7 23 0.00078 32.7 4.7 53 161-220 231-286 (352)
287 3kto_A Response regulator rece 43.1 49 0.0017 25.1 5.9 52 166-220 35-86 (136)
288 2rjn_A Response regulator rece 42.1 87 0.003 24.1 7.4 42 166-212 36-77 (154)
289 3jte_A Response regulator rece 42.0 70 0.0024 24.2 6.7 46 169-220 38-83 (143)
290 3hv2_A Response regulator/HD d 40.9 44 0.0015 26.0 5.5 49 166-219 43-91 (153)
291 3rqi_A Response regulator prot 40.2 57 0.0019 26.5 6.2 50 165-219 35-84 (184)
292 3kcn_A Adenylate cyclase homol 40.1 90 0.0031 24.0 7.2 47 166-220 32-81 (151)
293 3ilh_A Two component response 39.7 53 0.0018 24.8 5.7 27 180-211 59-85 (146)
294 3grc_A Sensor protein, kinase; 39.1 36 0.0012 25.9 4.6 40 166-210 35-74 (140)
295 1zg3_A Isoflavanone 4'-O-methy 38.8 27 0.00094 32.3 4.4 53 161-220 236-291 (358)
296 1dbw_A Transcriptional regulat 38.3 1.1E+02 0.0037 22.6 7.2 41 166-211 32-72 (126)
297 3i42_A Response regulator rece 38.2 32 0.0011 25.7 4.0 40 167-211 33-72 (127)
298 3gt7_A Sensor protein; structu 37.6 97 0.0033 24.0 7.1 41 166-211 36-76 (154)
299 3cz5_A Two-component response 37.1 85 0.0029 24.2 6.6 50 166-220 36-85 (153)
300 2qxy_A Response regulator; reg 36.9 65 0.0022 24.4 5.8 49 166-220 33-81 (142)
301 3k0b_A Predicted N6-adenine-sp 36.9 13 0.00043 35.8 1.7 59 161-224 290-352 (393)
302 3hdg_A Uncharacterized protein 36.1 50 0.0017 24.9 4.9 48 166-219 36-83 (137)
303 3cu5_A Two component transcrip 35.6 87 0.003 23.9 6.4 48 166-219 34-81 (141)
304 3heb_A Response regulator rece 33.7 1.1E+02 0.0038 23.4 6.8 26 180-210 58-83 (152)
305 1dz3_A Stage 0 sporulation pro 32.9 56 0.0019 24.4 4.7 46 166-216 33-78 (130)
306 3ldu_A Putative methylase; str 32.2 17 0.00059 34.7 1.8 60 161-225 284-347 (385)
307 3cg4_A Response regulator rece 31.5 60 0.0021 24.5 4.7 40 166-210 36-75 (142)
308 3snk_A Response regulator CHEY 31.3 50 0.0017 25.0 4.2 50 166-220 44-93 (135)
309 3f6p_A Transcriptional regulat 30.7 90 0.0031 23.0 5.5 49 166-220 31-79 (120)
310 3nhm_A Response regulator; pro 30.3 63 0.0022 24.1 4.6 41 166-211 32-72 (133)
311 2b4a_A BH3024; flavodoxin-like 30.2 69 0.0023 24.2 4.8 41 166-211 44-85 (138)
312 1yio_A Response regulatory pro 30.0 1.2E+02 0.004 24.8 6.6 42 166-212 33-74 (208)
313 3cnb_A DNA-binding response re 30.0 86 0.0029 23.5 5.4 35 169-211 45-79 (143)
314 3b2n_A Uncharacterized protein 29.7 77 0.0026 23.8 5.0 48 166-219 34-81 (133)
315 3v97_A Ribosomal RNA large sub 29.6 32 0.0011 35.7 3.4 63 161-225 283-350 (703)
316 2rdm_A Response regulator rece 29.3 86 0.0029 23.2 5.2 50 167-220 35-85 (132)
317 3hzh_A Chemotaxis response reg 28.8 78 0.0027 24.7 5.1 50 166-220 66-117 (157)
318 3a10_A Response regulator; pho 28.7 76 0.0026 22.9 4.7 42 166-212 30-71 (116)
319 3gl9_A Response regulator; bet 28.6 41 0.0014 25.2 3.2 41 166-211 31-71 (122)
320 4auk_A Ribosomal RNA large sub 28.6 52 0.0018 31.7 4.5 31 159-191 250-280 (375)
321 3hdv_A Response regulator; PSI 28.5 1.1E+02 0.0039 22.7 5.8 35 170-211 43-77 (136)
322 2zay_A Response regulator rece 28.5 75 0.0026 24.2 4.8 40 166-210 37-76 (147)
323 3rht_A (gatase1)-like protein; 27.8 38 0.0013 30.8 3.3 38 181-223 50-87 (259)
324 2pl1_A Transcriptional regulat 27.8 79 0.0027 23.0 4.7 50 166-220 29-78 (121)
325 3eul_A Possible nitrate/nitrit 27.7 71 0.0024 24.6 4.6 48 166-219 46-93 (152)
326 1k68_A Phytochrome response re 27.4 1.7E+02 0.0057 21.5 6.6 28 180-212 54-81 (140)
327 1xhf_A DYE resistance, aerobic 27.3 84 0.0029 23.0 4.7 41 166-211 32-72 (123)
328 2qsj_A DNA-binding response re 27.1 1.4E+02 0.0046 22.9 6.2 48 166-219 34-82 (154)
329 3t6k_A Response regulator rece 27.0 58 0.002 24.8 3.8 41 166-211 33-73 (136)
330 3cfy_A Putative LUXO repressor 26.3 88 0.003 23.7 4.8 48 166-219 33-80 (137)
331 2r25_B Osmosensing histidine p 26.3 78 0.0027 23.9 4.5 36 180-220 51-87 (133)
332 3lte_A Response regulator; str 26.0 54 0.0019 24.4 3.5 42 166-212 35-76 (132)
333 1zgz_A Torcad operon transcrip 26.0 79 0.0027 23.1 4.4 40 166-210 31-70 (122)
334 1jbe_A Chemotaxis protein CHEY 25.8 1.9E+02 0.0064 21.1 6.6 40 166-210 34-73 (128)
335 1zq9_A Probable dimethyladenos 25.6 27 0.00093 31.5 1.8 26 161-190 77-102 (285)
336 2jk1_A HUPR, hydrogenase trans 25.6 84 0.0029 23.7 4.6 48 166-219 29-76 (139)
337 3eqz_A Response regulator; str 25.2 1.2E+02 0.0042 22.3 5.4 48 165-219 31-78 (135)
338 3crn_A Response regulator rece 25.2 1.2E+02 0.0041 22.6 5.4 41 166-211 32-72 (132)
339 1srr_A SPO0F, sporulation resp 25.0 1.1E+02 0.0039 22.3 5.1 48 166-219 32-79 (124)
340 2a14_A Indolethylamine N-methy 24.5 24 0.00083 31.1 1.3 56 165-221 138-196 (263)
341 3cg0_A Response regulator rece 23.9 73 0.0025 23.9 3.9 49 167-220 40-88 (140)
342 3iek_A Ribonuclease TTHA0252; 23.0 79 0.0027 30.3 4.7 60 180-243 178-239 (431)
343 1mvo_A PHOP response regulator 22.5 76 0.0026 23.7 3.7 49 166-219 32-80 (136)
344 3n53_A Response regulator rece 22.2 65 0.0022 24.4 3.3 42 166-212 31-72 (140)
345 3kyj_B CHEY6 protein, putative 22.2 89 0.003 23.8 4.1 49 166-220 44-93 (145)
346 3f6c_A Positive transcription 21.8 1.2E+02 0.0042 22.4 4.8 42 169-219 37-78 (134)
347 3giw_A Protein of unknown func 21.7 1E+02 0.0036 28.2 5.0 57 161-222 131-200 (277)
348 1k66_A Phytochrome response re 21.6 1.5E+02 0.0053 22.1 5.4 27 180-211 61-87 (149)
349 2gkg_A Response regulator homo 21.4 58 0.002 23.8 2.7 50 166-220 34-86 (127)
350 2qv0_A Protein MRKE; structura 21.4 86 0.0029 23.7 3.8 45 166-216 40-84 (143)
351 3lcv_B Sisomicin-gentamicin re 20.9 2.4E+02 0.0081 26.0 7.2 38 207-244 221-264 (281)
352 1tmy_A CHEY protein, TMY; chem 20.9 1.3E+02 0.0044 21.8 4.6 42 166-212 32-73 (120)
353 3h5i_A Response regulator/sens 20.4 1.3E+02 0.0046 22.6 4.8 42 166-211 34-76 (140)
354 2lpm_A Two-component response 20.1 70 0.0024 25.3 3.0 34 169-210 44-77 (123)
No 1
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=100.00 E-value=1.1e-65 Score=489.09 Aligned_cols=251 Identities=30% Similarity=0.576 Sum_probs=219.0
Q ss_pred cccccccceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhH
Q 019882 48 HSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECA 127 (334)
Q Consensus 48 ~~~~~~~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~ 127 (334)
|-+.++.||+|. .++.+++++|+++|++++|+||+|+|++++.||++|+|||.+|+|++|||+
T Consensus 6 ~m~~~~~w~e~~-----------------~~~~~~~~~v~~vl~~~~S~yQ~i~v~~s~~~G~~L~LDg~~q~te~De~~ 68 (294)
T 3o4f_A 6 HMAEKKQWHETL-----------------HDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFI 68 (294)
T ss_dssp ----CEEEECCS-----------------SSSEEEEEEESEEEEEEC---CCEEEEEETTTEEEEEETTEEEEETTTHHH
T ss_pred ccccccceeeec-----------------cCCcceEEEEeeEEEeccCCCceEEEEEcCCcceEEEECCchhhccccHHH
Confidence 445566798775 256799999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccCCChhh-----------------------------------hHHhhCccccc-CCCCCCeEEEEchHH
Q 019882 128 YQEMIAHLPLCSIPSPKT-----------------------------------VSKKYFPELAV-GFEDPRVRLHIGDAV 171 (334)
Q Consensus 128 YhEmlvh~pl~~hp~Pkr-----------------------------------vak~~fp~l~~-~~~dpRv~viv~Dg~ 171 (334)
|||||+|+||++||+|++ +||+|||.++. +++|||++|+++||+
T Consensus 69 YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~ 148 (294)
T 3o4f_A 69 YHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGV 148 (294)
T ss_dssp HHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTT
T ss_pred HHHHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHH
Confidence 999999999999999999 68999999875 489999999999999
Q ss_pred HHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEE
Q 019882 172 EFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAW 251 (334)
Q Consensus 172 ~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~ 251 (334)
+||++. .++|||||+|++||.+++..|||+|||+.|+++|+|||++|+|++||+.+.+.++.++++++++|+ .|.+|.
T Consensus 149 ~~l~~~-~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~-~v~~~~ 226 (294)
T 3o4f_A 149 NFVNQT-SQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFS-DVGFYQ 226 (294)
T ss_dssp TTTSCS-SCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCS-EEEEEE
T ss_pred HHHhhc-cccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCC-ceeeee
Confidence 999887 478999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred EEeeecCCCcEEEEEeecCCCCCCCCCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHHHHhhcC
Q 019882 252 ASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVL 321 (334)
Q Consensus 252 ~~vPsyp~g~w~f~laSk~~~~~~~~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l~~~ 321 (334)
+.|||||+|.|+|++|||+.++..+. .... ..+......+|||||+++|+|||+||+|+|++|+.+
T Consensus 227 ~~vPty~~g~w~f~~as~~~~~~~~~---~~~~-~~~~~~~~~~~~yyn~~~h~aaF~lP~~~~~~l~~e 292 (294)
T 3o4f_A 227 AAIPTYYGGIMTFAWATDNDALRHLS---TEII-QARFLASGLKCRYYNPAIHTAAFALPQYLQDALASQ 292 (294)
T ss_dssp ECCTTSSSSCEEEEEEESCTTGGGCC---HHHH-HHHHHSSCCCCSSCCHHHHHHHTCCCHHHHHHTTSS
T ss_pred eeeccCCCcceeheeEECCCccccCC---hHHH-hHHHHhhCCCceEECHHHHHHHccCcHHHHHHHhcC
Confidence 99999999999999999986544322 1111 112233456899999999999999999999999753
No 2
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=100.00 E-value=3.1e-53 Score=403.45 Aligned_cols=246 Identities=30% Similarity=0.585 Sum_probs=198.7
Q ss_pred ccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHHhhhhccccCCChhh---
Q 019882 69 TMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT--- 145 (334)
Q Consensus 69 ~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkr--- 145 (334)
.+|++ ++|||.+++++++++|++++|+||+|.|++++.+|++|+|||.+|++++|||.|||||+|+|++.||+|++
T Consensus 11 ~~~~~-~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~L~ldg~~~~~~~de~~Y~e~l~~~~l~~~~~~~~VLd 89 (294)
T 3adn_A 11 KQWHE-TLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLI 89 (294)
T ss_dssp -CEEC-CSCSSEEEEECCSCEEEEC----CCCEEECCTTTCCEEEETTEEEEETTTHHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred hcccc-ccCCCceEEEEcccEEEEeECCCceEEEEEcCCcceEEEECCeEeeccCchhHHHHHHHHHHHhcCCCCCEEEE
Confidence 34443 68999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------hHHhhCccccc-CCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCC
Q 019882 146 --------------------------------VSKKYFPELAV-GFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDP 192 (334)
Q Consensus 146 --------------------------------vak~~fp~l~~-~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp 192 (334)
+|+++++.++. ++++||++++++||++|++.. +++||+||+|+++|
T Consensus 90 iG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fDvIi~D~~~p 168 (294)
T 3adn_A 90 IGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT-SQTFDVIISDCTDP 168 (294)
T ss_dssp ESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CC-CCCEEEEEECC---
T ss_pred EeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhc-CCCccEEEECCCCc
Confidence 57888887753 478999999999999999875 47899999999999
Q ss_pred CCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEEEEeecCCC
Q 019882 193 VGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGP 272 (334)
Q Consensus 193 ~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f~laSk~~~ 272 (334)
.+++..||+.+||+.++++|+|||++++|+++++.+.+.++.++++++++|+ .+.++.+.||+||+|.|+|++|||..+
T Consensus 169 ~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~s~~~~~~~~~~~~~~l~~~F~-~v~~~~~~vp~~p~g~~~f~~as~~~~ 247 (294)
T 3adn_A 169 IGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFS-DVGFYQAAIPTYYGGIMTFAWATDNDA 247 (294)
T ss_dssp -------CCHHHHHHHHHTEEEEEEEEEEEEECSSCCHHHHHHHHHHHHHCS-EEEEEEEECTTSSSSEEEEEEEESCTT
T ss_pred cCcchhccHHHHHHHHHHhcCCCCEEEEecCCcccchHHHHHHHHHHHHHCC-CeEEEEEEecccCCCceEEEEEeCCcc
Confidence 9999999999999999999999999999999999888899999999999999 788999999999999999999999865
Q ss_pred CCCCCCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHHHHhhcC
Q 019882 273 HVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVL 321 (334)
Q Consensus 273 ~~~~~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l~~~ 321 (334)
|.++. .+.++ ++......++||||+++|+|||+||+|++++|...
T Consensus 248 ~~~~~--~~~~~--~~~~~~~~~~~yy~~~~h~~~f~lp~~~~~~~~~~ 292 (294)
T 3adn_A 248 LRHLS--TEIIQ--ARFLASGLKCRYYNPAIHTAAFALPQYLQDALASQ 292 (294)
T ss_dssp CSCCH--HHHCC--CCCC----CCSSCCHHHHHHTTCCCHHHHHHCCCC
T ss_pred cccCC--HHHHH--HHHhccCCCCeEECHHHHHHHhcCcHHHHHHhhcc
Confidence 54321 11111 12222334799999999999999999999999653
No 3
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=100.00 E-value=1.3e-51 Score=395.65 Aligned_cols=265 Identities=46% Similarity=0.861 Sum_probs=207.0
Q ss_pred cccccccceeecc---------cCCCCccccccc----CCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEE
Q 019882 48 HSTVVSGWFSESQ---------STSDKTGKTMYF----NNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVL 114 (334)
Q Consensus 48 ~~~~~~~wf~e~~---------~~~~~~~~~~~~----~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~L 114 (334)
|+++|++||+|.. ...+|++|.+|+ .+++|||.+++++++++|++++|+||+|.|++++.+|++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~l 80 (314)
T 2b2c_A 1 MNKLHKGWFTEFSPDDLEKMNGASDEEPTKVLKSDGQEMGGAWPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVL 80 (314)
T ss_dssp --CBCSSEEEEECSCCC-----------------------CCCTTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEE
T ss_pred CCcccccceEeeccccccccccccccccccccccccccccccCCCceEEeecccEEEEEECCCCCEEEEEcCCCCEEEEE
Confidence 4678899999983 123688999999 567899999999999999999999999999999999999999
Q ss_pred CCeEEeeccchhHHHHHhhhhccccCCChhh-----------------------------------hHHhhCcccccCCC
Q 019882 115 DGIVQLTEKDECAYQEMIAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFE 159 (334)
Q Consensus 115 DG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkr-----------------------------------vak~~fp~l~~~~~ 159 (334)
||.+|++++||+.|||||+|++++.|++|++ +|+++++.++.+++
T Consensus 81 dg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~ 160 (314)
T 2b2c_A 81 DGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFS 160 (314)
T ss_dssp TTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGG
T ss_pred CCEeecCCcchhHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccC
Confidence 9999999999999999999999999999988 46777776544456
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHH
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISIC 239 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl 239 (334)
++|++++++|++++++.. +++||+||+|+++|.+++..||+.+||+.++++|+|||+++++.+++|.+...++.+.+++
T Consensus 161 ~~rv~~~~~D~~~~l~~~-~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l 239 (314)
T 2b2c_A 161 HPKLDLFCGDGFEFLKNH-KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFN 239 (314)
T ss_dssp CTTEEEECSCHHHHHHHC-TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHH
T ss_pred CCCEEEEEChHHHHHHhc-CCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHH
Confidence 899999999999999875 4689999999999998888999999999999999999999999999998888899999999
Q ss_pred HHhcCCceeEEEEEeeecCCCcEEEEEeecCCCCCCCCCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHHHHh
Q 019882 240 RETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREV 318 (334)
Q Consensus 240 ~~vF~~~v~~~~~~vPsyp~g~w~f~laSk~~~~~~~~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l 318 (334)
+++|+ .+.++.+.||+||+|.|||++|||+. ..++.+|++.+.. ++.. ..++||||+++|+|||+||+|++++|
T Consensus 240 ~~vF~-~v~~~~~~iP~~~~g~~g~~~ask~~-~~~~~~~~~~~~~-~~~~--~~~~~yy~~~~h~~~f~lp~~~~~~l 313 (314)
T 2b2c_A 240 RKIFP-AVTYAQSIVSTYPSGSMGYLICAKNA-NRDVTTPARTLTA-EQIK--ALNLRFYNSEVHKAAFVLPQFVKNAL 313 (314)
T ss_dssp HHHCS-EEEEEEEECTTSGGGEEEEEEEESST-TCCTTSCSSCCCH-HHHH--HTTCSSCCHHHHHHTTCCCHHHHHTC
T ss_pred HHHCC-cceEEEEEecCcCCCceEEEEEeCCC-cccccCchhhhhH-Hhhc--ccCCeEECHHHHHHHccCcHHHHHhh
Confidence 99999 78999999999999999999999972 2233445433321 1111 12789999999999999999999987
No 4
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=100.00 E-value=8.5e-51 Score=382.35 Aligned_cols=239 Identities=35% Similarity=0.650 Sum_probs=214.3
Q ss_pred ccceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHHh
Q 019882 53 SGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMI 132 (334)
Q Consensus 53 ~~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEml 132 (334)
++||+|.++ ||.+++++++++|++++|+||+|.|++++.+|++|++||.+|++++||+.|||||
T Consensus 2 ~~w~~e~~~----------------~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~~q~~~~de~~y~e~l 65 (275)
T 1iy9_A 2 ELWYTEKQT----------------KNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMV 65 (275)
T ss_dssp CEEEEEEEE----------------TTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHH
T ss_pred CccEEEecC----------------CCcEEEEeeeeEEEEEECCCceEEEEEcCCCCEEEEECCEEeecccchhHHHHHH
Confidence 369999754 7899999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCChhh-----------------------------------hHHhhCcccccCCCCCCeEEEEchHHHHHhhC
Q 019882 133 AHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV 177 (334)
Q Consensus 133 vh~pl~~hp~Pkr-----------------------------------vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~ 177 (334)
+|+|++.||+|++ +|+++++.++.++++||++++++||++||+..
T Consensus 66 ~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~ 145 (275)
T 1iy9_A 66 AHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS 145 (275)
T ss_dssp HHHHHHHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC
T ss_pred HHHHHhhCCCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC
Confidence 9999999999988 57888887755678899999999999999875
Q ss_pred CCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeec
Q 019882 178 PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTY 257 (334)
Q Consensus 178 ~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsy 257 (334)
+++||+||+|+++|.+++.+|++.+||+.++++|+|||+++++.++++.+.+.++.+.++++++|+ .+.++.+.||+|
T Consensus 146 -~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~-~v~~~~~~vp~~ 223 (275)
T 1iy9_A 146 -ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFP-ITKLYTANIPTY 223 (275)
T ss_dssp -CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCS-EEEEEEECCTTS
T ss_pred -CCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCC-CeEEEEEecCcc
Confidence 478999999999999999999999999999999999999999999999888889999999999999 788889999999
Q ss_pred CCCcEEEEEeecCCCCCCCCCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHHHHhh
Q 019882 258 PSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVS 319 (334)
Q Consensus 258 p~g~w~f~laSk~~~~~~~~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l~ 319 (334)
|+|.|+|++|||+.+|.++. . . .....++||||+++|+|||+||+|++++|+
T Consensus 224 ~~g~w~~~~ask~~~~~~~~---~------~-~~~~~~~~~~~~~~~~~~f~lp~~~~~~~~ 275 (275)
T 1iy9_A 224 PSGLWTFTIGSKKYDPLAVE---D------S-RFFDIETKYYTKDIHKAAFVLPKFVSDLIK 275 (275)
T ss_dssp GGGCEEEEEEESSCCTTCCC---G------G-GCCCCCCSSCCHHHHHHTTCCCHHHHTTC-
T ss_pred cCcceEEEEeeCCCCccccc---h------h-hccccCCeEeCHHHHHHHcCCCHHHHHhhC
Confidence 99999999999986655422 0 1 112357899999999999999999998763
No 5
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=100.00 E-value=3.3e-50 Score=389.11 Aligned_cols=265 Identities=65% Similarity=1.239 Sum_probs=225.0
Q ss_pred CcccccccccccccceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEe
Q 019882 41 PELDAKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQL 120 (334)
Q Consensus 41 ~~~~~~~~~~~~~~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~ 120 (334)
+.....+|+.++++||+|. .++|||.+++++|+++|++++|+||+|.|+++..+|++|++||.+|+
T Consensus 33 ~~~~~~~~~~~~~~w~~e~--------------~~~~~~~~~~~~v~~vl~~~~s~~q~I~v~~~~~~g~~l~ldg~~~~ 98 (334)
T 1xj5_A 33 QKKEPACFSTVIPGWFSEM--------------SPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQL 98 (334)
T ss_dssp --------CCCCSSEEEEC--------------CTTSTTEEEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEE
T ss_pred CCCCCCCCcccccceEEEe--------------ccCCCCceEEEEeeeEEEEeecCCeEEEEEEcCCCCeEEEECCEeec
Confidence 4455679999999999997 46789999999999999999999999999999999999999999999
Q ss_pred eccchhHHHHHhhhhccccCCChhh-----------------------------------hHHhhCcccccCCCCCCeEE
Q 019882 121 TEKDECAYQEMIAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPRVRL 165 (334)
Q Consensus 121 te~DEf~YhEmlvh~pl~~hp~Pkr-----------------------------------vak~~fp~l~~~~~dpRv~v 165 (334)
+++||+.|||||+|++++.|++|++ +|+++++.++.+++++|+++
T Consensus 99 ~~~de~~y~e~L~~l~l~~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~ 178 (334)
T 1xj5_A 99 TERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNL 178 (334)
T ss_dssp ETTTHHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEE
T ss_pred CcCcchHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEE
Confidence 9999999999999999999999888 46677766544567899999
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCC
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKG 245 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~ 245 (334)
+.+|+.++++..++++||+||+|+++|.+++..|++.+||+.++++|+|||++++|++++|.+...++.++++++++|+.
T Consensus 179 ~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~ 258 (334)
T 1xj5_A 179 VIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKG 258 (334)
T ss_dssp EESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSS
T ss_pred EECCHHHHHHhccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCcc
Confidence 99999999986544689999999999998877899999999999999999999999999999888888999999999996
Q ss_pred ceeEEEEEeeecCCCcEEEEEeecCCCCCCCCCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHHHHhhcC
Q 019882 246 SVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVL 321 (334)
Q Consensus 246 ~v~~~~~~vPsyp~g~w~f~laSk~~~~~~~~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l~~~ 321 (334)
.+.++++.+|+|++|.|||++||++.++.++.+|++.++. ++.. ...+|||||+++|+|||+||+|+++.|+++
T Consensus 259 ~~~~~~~~vP~y~~g~~gf~~as~~~~~~~~~~~~~~~~~-~~~~-~~~~~~yy~~~~h~~~f~lp~~~~~~l~~~ 332 (334)
T 1xj5_A 259 SVNYAWTSVPTYPSGVIGFMLCSTEGPDVDFKHPLNPIDE-SSSK-SNGPLKFYNAEIHSAAFCLPSFAKKVIESK 332 (334)
T ss_dssp CEEEEEEECTTSGGGEEEEEEEECSSSCCCSSSCSSCCCS-GGGT-TTCCCSSCCHHHHHHTTCCCHHHHHHHC--
T ss_pred ccceEEEeCCcccCCceEEEEcccCCccccccCchhhhhh-hhhc-ccCCceEECHHHHHHHhcCcHHHHHHHhcc
Confidence 6788889999999999999999997555555666554321 1111 345799999999999999999999999743
No 6
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=100.00 E-value=1.9e-50 Score=385.65 Aligned_cols=255 Identities=45% Similarity=0.944 Sum_probs=210.5
Q ss_pred cccccccccceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccch
Q 019882 46 KCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDE 125 (334)
Q Consensus 46 ~~~~~~~~~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DE 125 (334)
..+..++++||+|. +++|||.+++++|+++||+++|+||+|.|++++.+|++|+|||.+|++++||
T Consensus 13 ~~~~~~~~~w~~e~--------------~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~L~ldg~~~~~~~de 78 (304)
T 2o07_A 13 SGPAAIREGWFRET--------------CSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDE 78 (304)
T ss_dssp -----CBTTEEEEC--------------CTTSTTEEEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTH
T ss_pred CCCcccccceEEEe--------------ccCCCCceEEEEeccEEEEEECCCcEEEEEEcCCCceEEEECCEEEeecccc
Confidence 45667789999997 4689999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhccccCCChhh-----------------------------------hHHhhCcccccCCCCCCeEEEEchH
Q 019882 126 CAYQEMIAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPRVRLHIGDA 170 (334)
Q Consensus 126 f~YhEmlvh~pl~~hp~Pkr-----------------------------------vak~~fp~l~~~~~dpRv~viv~Dg 170 (334)
+.|||||+|++++.|++|++ +|+++++.++.+++++|++++++||
T Consensus 79 ~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da 158 (304)
T 2o07_A 79 FSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDG 158 (304)
T ss_dssp HHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred hHHHHHHHHHHHhhCCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcH
Confidence 99999999999999999988 4677777654456689999999999
Q ss_pred HHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEE
Q 019882 171 VEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYA 250 (334)
Q Consensus 171 ~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~ 250 (334)
+++|... +++||+||+|+++|.+++..|++.+||+.++++|+|||+++++.+++|.+....+.+.++++++|+ .+.++
T Consensus 159 ~~~l~~~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~-~v~~~ 236 (304)
T 2o07_A 159 FEFMKQN-QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFP-VVAYA 236 (304)
T ss_dssp HHHHHTC-SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCS-EEEEE
T ss_pred HHHHhhC-CCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCC-CceeE
Confidence 9999875 478999999999999888889999999999999999999999999999888888999999999999 78999
Q ss_pred EEEeeecCCCcEEEEEeecCCCCCCCCCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHHHHhhc
Q 019882 251 WASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSV 320 (334)
Q Consensus 251 ~~~vPsyp~g~w~f~laSk~~~~~~~~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l~~ 320 (334)
++.||+||+|.|||++|||. +..++..|++++... + ....++||||+++|+|+|+||+|+++.|++
T Consensus 237 ~~~vP~~~~g~~g~~~as~~-~~~~~~~~~~~~~~~-~--~~~~~~~~y~~~~h~~~f~lp~~~~~~~~~ 302 (304)
T 2o07_A 237 YCTIPTYPSGQIGFMLCSKN-PSTNFQEPVQPLTQQ-Q--VAQMQLKYYNSDVHRAAFVLPEFARKALND 302 (304)
T ss_dssp EEECTTSGGGEEEEEEEESS-TTCCSSSCSSCCCHH-H--HHHTTCSSCCHHHHHHTTCCCHHHHHHHHC
T ss_pred EEEeccccCcceEEEEEeCC-cccccccchhhhhHh-h--hcccCCeEECHHHHHHHhcCcHHHHHHhhc
Confidence 89999999999999999987 223444554433211 1 111478999999999999999999999974
No 7
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=100.00 E-value=4.3e-50 Score=378.75 Aligned_cols=244 Identities=51% Similarity=0.905 Sum_probs=216.4
Q ss_pred ccceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHHh
Q 019882 53 SGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMI 132 (334)
Q Consensus 53 ~~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEml 132 (334)
++||+|. +++|||.+++++++++|++++|+||+|.|++++.+|++|+|||.+|++++||+.|||||
T Consensus 3 ~~w~~e~--------------~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~Y~e~l 68 (283)
T 2i7c_A 3 KKWFSEF--------------SIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMM 68 (283)
T ss_dssp CCEEEEC--------------CTTSTTCCEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHH
T ss_pred ceeEEEc--------------ccCCCCceEEEecccEEEEEECCCccEEEEEcCCCCEEEEECCEeeecccchhhHHHHH
Confidence 5799997 45789999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCChhh-----------------------------------hHHhhCcccccCCCCCCeEEEEchHHHHHhhC
Q 019882 133 AHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV 177 (334)
Q Consensus 133 vh~pl~~hp~Pkr-----------------------------------vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~ 177 (334)
+|++++.|++|++ +|+++++.++.+++++|++++++|++++++..
T Consensus 69 ~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~ 148 (283)
T 2i7c_A 69 THVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV 148 (283)
T ss_dssp HHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC
T ss_pred HHHHHhcCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC
Confidence 9999999999988 46777776654567899999999999999876
Q ss_pred CCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeec
Q 019882 178 PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTY 257 (334)
Q Consensus 178 ~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsy 257 (334)
+++||+||+|+++|.+++..|++.+||+.++++|+|||++++|++++|.+.+.++.+.++++++|+ .+.++.+.||+|
T Consensus 149 -~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~-~v~~~~~~vP~y 226 (283)
T 2i7c_A 149 -TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTY 226 (283)
T ss_dssp -CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCS-EEEEEEEECTTS
T ss_pred -CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCC-ceEEEEEEcCCc
Confidence 468999999999999998899999999999999999999999999999888889999999999999 788999999999
Q ss_pred CCCcEEEEEeecCCCCCCCCCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHHHHhh
Q 019882 258 PSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVS 319 (334)
Q Consensus 258 p~g~w~f~laSk~~~~~~~~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l~ 319 (334)
|+|.|||++|||+ +.++.+|++.+.. ++ ...+||||+++|+|||+||+|+++.|+
T Consensus 227 ~~g~~g~~~~s~~--~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~f~~p~~~~~~~~ 281 (283)
T 2i7c_A 227 PCGCIGILCCSKT--DTGLTKPNKKLES-KE----FADLKYYNYENHSAAFKLPAFLLKEIE 281 (283)
T ss_dssp GGGEEEEEEEESS--TTCSSSCSSCCCS-GG----GTTCSSCCHHHHHHTTCCCHHHHHHHT
T ss_pred CCCcEEEEEEeCC--CccccCchhhhhh-hh----hhcCceECHHHHHHHhcCcHHHHHHhh
Confidence 9999999999987 3334445443221 11 124699999999999999999999986
No 8
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=100.00 E-value=5.4e-49 Score=373.67 Aligned_cols=256 Identities=31% Similarity=0.584 Sum_probs=216.2
Q ss_pred cCCcccccccccccccceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeE
Q 019882 39 SAPELDAKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIV 118 (334)
Q Consensus 39 ~~~~~~~~~~~~~~~~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~i 118 (334)
+.|+.+..+|. +.++||+|.+ . ||+.+++++++++|++++|+||+|.|++++.+|+.|++||.+
T Consensus 3 ~~~~~~~~~~~-~~~~w~~e~~--------------~-~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~ 66 (296)
T 1inl_A 3 TLKELERELQP-RQHLWYFEYY--------------T-GNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGIT 66 (296)
T ss_dssp CHHHHCCCCCC-CSSEEEEEEC--------------T-TSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEE
T ss_pred cchhhHhhcCC-CCCceEEEec--------------C-CCCceEEeecccEEEEEECCCccEEEEEcCCCcEEEEECCEE
Confidence 45677788888 8888999972 3 799999999999999999999999999999999999999999
Q ss_pred EeeccchhHHHHHhhhhccccCCChhh-----------------------------------hHHhhCcccccCCCCCCe
Q 019882 119 QLTEKDECAYQEMIAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPRV 163 (334)
Q Consensus 119 Q~te~DEf~YhEmlvh~pl~~hp~Pkr-----------------------------------vak~~fp~l~~~~~dpRv 163 (334)
|++++|++.|||||+|++++.|++|++ +|+++++.++.+++++|+
T Consensus 67 ~~~~~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v 146 (296)
T 1inl_A 67 MTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRA 146 (296)
T ss_dssp EEETTTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE
T ss_pred eecccchhHHHHHHhHHHHhcCCCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCce
Confidence 999999999999999999999999887 466777665444668999
Q ss_pred EEEEchHHHHHhhCCCCceeEEEECCCCC-CCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHh
Q 019882 164 RLHIGDAVEFLRQVPRGKYDAIIVDSSDP-VGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET 242 (334)
Q Consensus 164 ~viv~Dg~~fL~~~~~~~yDvIIvD~~dp-~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~v 242 (334)
+++.+|+++++... +++||+||+|+++| .+++..|++.+||+.++++|+|||+++.++++++.+.+.++.+.++++++
T Consensus 147 ~~~~~D~~~~l~~~-~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 225 (296)
T 1inl_A 147 EIVIANGAEYVRKF-KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV 225 (296)
T ss_dssp EEEESCHHHHGGGC-SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH
T ss_pred EEEECcHHHHHhhC-CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH
Confidence 99999999999875 46899999999999 88888999999999999999999999999999988888899999999999
Q ss_pred cCCceeEEEEEeeecCCCcEEEEEeecCCCCC-CCCCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHHHHhhc
Q 019882 243 FKGSVHYAWASVPTYPSGIIGFLICSTEGPHV-DFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSV 320 (334)
Q Consensus 243 F~~~v~~~~~~vPsyp~g~w~f~laSk~~~~~-~~~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l~~ 320 (334)
|+ .+.++.+.||+||+|.|+|++|||+.+|. ++. . ++......++||||+++|+|+|+||+|++++|+.
T Consensus 226 F~-~v~~~~~~vp~~p~g~~~f~~as~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~ 295 (296)
T 1inl_A 226 FP-ITRVYLGFMTTYPSGMWSYTFASKGIDPIKDFD------P--EKVRKFNKELKYYNEEVHVASFALPNFVKKELGL 295 (296)
T ss_dssp CS-EEEEEEEECTTSTTSEEEEEEEESSCCTTTTCC------H--HHHHTCSSCCSSCCHHHHHHTTCCCHHHHHHTTC
T ss_pred CC-ceEEEEeecCccCCCceEEEEecCCCChhhhhh------h--hhHhhccCCceecCHHHHHHHcCCcHHHHHHHhh
Confidence 99 78888899999999999999999985554 221 0 1112223478999999999999999999999864
No 9
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=100.00 E-value=4e-48 Score=372.13 Aligned_cols=252 Identities=49% Similarity=0.853 Sum_probs=216.2
Q ss_pred ccccccccccceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccc
Q 019882 45 AKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKD 124 (334)
Q Consensus 45 ~~~~~~~~~~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~D 124 (334)
...|.+.|++||+|. .++|||.+++++++++|++++|+||+|.|++++.+|+.|++||.+|+++.|
T Consensus 33 ~~~~~~~~~~w~~e~--------------~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~d 98 (321)
T 2pt6_A 33 HLSQFCFSKKWFSEF--------------SIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKD 98 (321)
T ss_dssp --------CCEEEEC--------------CTTSTTCCEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTT
T ss_pred ccccccccceEEEEe--------------ccCCCCceEEEecccEEEEEECCCceEEEEEcCCCcEEEEECCEeeeCccc
Confidence 445555788999997 457999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhccccCCChhh-----------------------------------hHHhhCcccccCCCCCCeEEEEch
Q 019882 125 ECAYQEMIAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPRVRLHIGD 169 (334)
Q Consensus 125 Ef~YhEmlvh~pl~~hp~Pkr-----------------------------------vak~~fp~l~~~~~dpRv~viv~D 169 (334)
|+.|||||+|++++.|++|++ +|+++++.++.+++++|++++.+|
T Consensus 99 e~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D 178 (321)
T 2pt6_A 99 EFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIED 178 (321)
T ss_dssp HHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESC
T ss_pred chHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEcc
Confidence 999999999999999999888 466777665334568999999999
Q ss_pred HHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeE
Q 019882 170 AVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHY 249 (334)
Q Consensus 170 g~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~ 249 (334)
++++++.. +++||+||+|+++|.+++..|++.+||+.++++|+|||+++.+.++++.+.+.++.+.++++++|+ .+.+
T Consensus 179 ~~~~l~~~-~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~-~v~~ 256 (321)
T 2pt6_A 179 ASKFLENV-TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFK-KVEY 256 (321)
T ss_dssp HHHHHHHC-CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCS-EEEE
T ss_pred HHHHHhhc-CCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCC-CeEE
Confidence 99999875 468999999999999888899999999999999999999999999998888889999999999999 7889
Q ss_pred EEEEeeecCCCcEEEEEeecCCCCCCCCCCCCchhhccccccCC-CCCceeCHHHHHHHhcCcHHHHHHhhc
Q 019882 250 AWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHK-RELRFYNSEIHSAAFALPAFLKREVSV 320 (334)
Q Consensus 250 ~~~~vPsyp~g~w~f~laSk~~~~~~~~~p~~~~~~~~~~~~~~-~~lryYn~~ih~aaF~LP~~~~~~l~~ 320 (334)
+.+.||+||+|.|+|++|||+.+|.++.. + +..... .++||||+++|+|+|+||+|++++|+.
T Consensus 257 ~~~~vp~~~~g~w~f~~as~~~~p~~~~~--~------~~~~~~~~~~~~y~~~~h~~~f~lp~~~~~~~~~ 320 (321)
T 2pt6_A 257 ANISIPTYPCGCIGILCCSKTDTGLTKPN--K------KLESKEFADLKYYNYENHSAAFKLPAFLLKEIEN 320 (321)
T ss_dssp EEEECTTSGGGEEEEEEEESSTTCSSSCS--S------CCCSGGGTTCSSCCHHHHHHTTCCCHHHHHHTSC
T ss_pred EEEEeccccCceEEEEEeeCCCCccchhH--H------HHHhccCCCCeEECHHHHHHHhCCcHHHHHHHhh
Confidence 99999999999999999999876664321 1 111111 378999999999999999999999863
No 10
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=100.00 E-value=6.5e-47 Score=362.10 Aligned_cols=250 Identities=31% Similarity=0.491 Sum_probs=215.1
Q ss_pred cccceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHH
Q 019882 52 VSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEM 131 (334)
Q Consensus 52 ~~~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEm 131 (334)
|++||+|.++ |+.+++++++++|++++|+||+|.|+++..+|++|+|||.+|++++||+.||||
T Consensus 3 ~~~w~~e~~~----------------~~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~Y~e~ 66 (314)
T 1uir_A 3 YGMYFFEHVT----------------PYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHET 66 (314)
T ss_dssp SSCEEEEESS----------------SSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHH
T ss_pred CCceEEEEcC----------------CCcEEEEecceEEEEEECCCCCEEEEEcCCCcEEEEECCEEeeeecchhHHHHH
Confidence 4679999743 789999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCCChhh-----------------------------------hHHhhCcccccC-CCCCCeEEEEchHHHHHh
Q 019882 132 IAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVG-FEDPRVRLHIGDAVEFLR 175 (334)
Q Consensus 132 lvh~pl~~hp~Pkr-----------------------------------vak~~fp~l~~~-~~dpRv~viv~Dg~~fL~ 175 (334)
|+|++++.|++|++ +|+++++.++.+ ++++|++++++|++++++
T Consensus 67 l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~ 146 (314)
T 1uir_A 67 LVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE 146 (314)
T ss_dssp HHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHH
Confidence 99999999999988 467777765444 668999999999999998
Q ss_pred hCCCCceeEEEECCCCCC---CCCcCCCCHHHHHHHHHhcCCCcEEEEeccchh-hhhhHHHHHHHHHHHhcCCceeEEE
Q 019882 176 QVPRGKYDAIIVDSSDPV---GPAQELVEKPFFDTIAKALRPGGVLCNMAESMW-LHTHLIEDMISICRETFKGSVHYAW 251 (334)
Q Consensus 176 ~~~~~~yDvIIvD~~dp~---gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~-~~~~~~~~i~~tl~~vF~~~v~~~~ 251 (334)
.. +++||+||+|+++|. +++..|++.+||+.++++|+|||++++|.++++ .+.+.++.+.++++++|+ .+.++.
T Consensus 147 ~~-~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~-~v~~~~ 224 (314)
T 1uir_A 147 RT-EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFR-YVRSYK 224 (314)
T ss_dssp HC-CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCS-EEEEEE
T ss_pred hc-CCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCC-ceEEEE
Confidence 75 468999999999998 778899999999999999999999999998888 677889999999999999 788888
Q ss_pred EEeeecCCCcEEEEEeecCCCCCCCCCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHHHHhhcCCCC
Q 019882 252 ASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVLGDS 324 (334)
Q Consensus 252 ~~vPsyp~g~w~f~laSk~~~~~~~~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l~~~~~~ 324 (334)
+.+|+| +|.|+|++|||+.+|.++. | ..++ ++......++||||+++|+|+|+||+|+++.|+.....
T Consensus 225 ~~vP~~-~g~~~~~~as~~~~p~~~~-~-~~~~--~~~~~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~~~~~ 292 (314)
T 1uir_A 225 NHIPGF-FLNFGFLLASDAFDPAAFS-E-GVIE--ARIRERNLALRHLTAPYLEAMFVLPKDLLEALEKETMV 292 (314)
T ss_dssp EEEGGG-TEEEEEEEEESSSCTTCCC-T-THHH--HHHHHTTCCCSSCCHHHHHHTTCCCHHHHHHHHHCCCC
T ss_pred EecCCC-CCeEEEEEEECCCCcccCC-H-HHHH--HHhhccccCccccCHHHHHHHcCCCHHHHHHhhCCCCc
Confidence 999999 7899999999987666442 2 1121 11122233789999999999999999999999876553
No 11
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=100.00 E-value=5.3e-47 Score=360.99 Aligned_cols=254 Identities=41% Similarity=0.854 Sum_probs=210.1
Q ss_pred cccccccccceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeC---CceeEEEECCeEEeec
Q 019882 46 KCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESL---AYGKVLVLDGIVQLTE 122 (334)
Q Consensus 46 ~~~~~~~~~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~---~~G~~L~LDG~iQ~te 122 (334)
++...+.++||+|. ..+||+.+++++++++|++++|+||+|.|+++. .+|++|++||.+|+++
T Consensus 10 ~~~~~~~~~w~~e~--------------~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~p~g~~g~~l~ldg~~~~~~ 75 (304)
T 3bwc_A 10 PGSELISGGWFREE--------------NDQWPGQAMSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCIQVTD 75 (304)
T ss_dssp --CCCCTTSEEEEC--------------CSSSCSEEEEEEEEEEEEEEECSSSEEEEEEECTTSSCCEEEEETTEEEEET
T ss_pred CCCccccCceEEEe--------------ccCCCCceEEEecccEEEEeECCCCCEEEEEecCCCccceEEEECCeeeeec
Confidence 34456677899997 467999999999999999999999999999999 8999999999999999
Q ss_pred cchhHHHHHhhhhccccCCChhh-----------------------------------hHHhhCcccccCCCCCCeEEEE
Q 019882 123 KDECAYQEMIAHLPLCSIPSPKT-----------------------------------VSKKYFPELAVGFEDPRVRLHI 167 (334)
Q Consensus 123 ~DEf~YhEmlvh~pl~~hp~Pkr-----------------------------------vak~~fp~l~~~~~dpRv~viv 167 (334)
+|++.|||||+|++++.|++|++ +|+++++.++..+.++|++++.
T Consensus 76 ~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~ 155 (304)
T 3bwc_A 76 YDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV 155 (304)
T ss_dssp TTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE
T ss_pred ccchHHHHHHhhhhhhcCCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE
Confidence 99999999999999999999888 4667777655456789999999
Q ss_pred chHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHh-cCCc
Q 019882 168 GDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET-FKGS 246 (334)
Q Consensus 168 ~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~v-F~~~ 246 (334)
+|+.+++....+++||+||+|+++|.++...||+.+||+.++++|+|||+++++.++++.+....+.+.++++++ |+ .
T Consensus 156 ~D~~~~~~~~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~-~ 234 (304)
T 3bwc_A 156 GDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFA-S 234 (304)
T ss_dssp SCHHHHHHSSCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCS-E
T ss_pred CcHHHHHHhccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCC-c
Confidence 999999976334689999999999999989999999999999999999999999999988777889999999999 99 7
Q ss_pred eeEEEEEeeecCCCcEEEEEeecCCCCCCCCCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHHHHhh
Q 019882 247 VHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVS 319 (334)
Q Consensus 247 v~~~~~~vPsyp~g~w~f~laSk~~~~~~~~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l~ 319 (334)
+.++.+.+|+||+|.|+|++|||+..+ +...|.+.+.. ++. ..++||||+++|+|||+||+|++++|+
T Consensus 235 v~~~~~~vP~yp~g~w~f~~as~~~~~-~~~~~~~~~~~-~~~---~~~~~~y~~~~~~~~f~~p~~~~~~~~ 302 (304)
T 3bwc_A 235 VQYALMHVPTYPCGSIGTLVCSKKAGV-DVTKPLRPVED-MPF---AKDLKYYDSEMHKASFALPRFARHINN 302 (304)
T ss_dssp EEEEECCCTTSTTSCCEEEEEESSSSC-CTTSCSSCGGG-SGG---GGGCSSCCHHHHHHHTCCCGGGGGGTC
T ss_pred EEEEEeecccccCcceEEEEEeCCccc-cccChhhhhhh-hhh---ccCCeEECHHHHHHHcCCCHHHHHHhc
Confidence 888888999999999999999997332 22344432211 111 127999999999999999999999886
No 12
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=100.00 E-value=1.1e-46 Score=354.89 Aligned_cols=238 Identities=29% Similarity=0.530 Sum_probs=201.9
Q ss_pred cccceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHH
Q 019882 52 VSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEM 131 (334)
Q Consensus 52 ~~~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEm 131 (334)
|++||+|.++ ||.+++++++++|++++|+||+|.|++++.+|++|++||.+|++++|++.||||
T Consensus 1 ~~~w~~e~~~----------------~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~~q~~~~d~~~y~e~ 64 (281)
T 1mjf_A 1 MERAFIEWYP----------------RGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEP 64 (281)
T ss_dssp ---CEEEEEG----------------GGEEEEECEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTTHHHHHH
T ss_pred CCccEEEecC----------------CCceEEEeeccEEEEeeCCCccEEEEECCCccEEEEECCEeeeccccchHHHHH
Confidence 4689999854 789999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCCChhh----------------------------------hHHhhCcccccCC-------CCCCeEEEEchH
Q 019882 132 IAHLPLCSIPSPKT----------------------------------VSKKYFPELAVGF-------EDPRVRLHIGDA 170 (334)
Q Consensus 132 lvh~pl~~hp~Pkr----------------------------------vak~~fp~l~~~~-------~dpRv~viv~Dg 170 (334)
|+|++++.|++|++ +|++++ .++.++ +++|++++.+||
T Consensus 65 l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~ 143 (281)
T 1mjf_A 65 LVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDG 143 (281)
T ss_dssp HHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCH
T ss_pred HHHHHHhhCCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECch
Confidence 99999999998888 456666 443345 689999999999
Q ss_pred HHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEE
Q 019882 171 VEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYA 250 (334)
Q Consensus 171 ~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~ 250 (334)
++++.. +++||+||+|+++|.+++..|++.+||+.++++|+|||+++++.++++.+.+.++.+.++++++|+ .+.++
T Consensus 144 ~~~l~~--~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~-~v~~~ 220 (281)
T 1mjf_A 144 FEFIKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFD-RVYYY 220 (281)
T ss_dssp HHHHHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCS-EEEEE
T ss_pred HHHhcc--cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCC-ceEEE
Confidence 999987 368999999999999888899999999999999999999999999998888889999999999999 78888
Q ss_pred EEEeeecCCCcEEEEEeecC-CCCCCCCCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHHHHhhc
Q 019882 251 WASVPTYPSGIIGFLICSTE-GPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSV 320 (334)
Q Consensus 251 ~~~vPsyp~g~w~f~laSk~-~~~~~~~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l~~ 320 (334)
.+.+|+| +|.|+|++|||+ .+|.++ +. ++.. ..++||||+++|+|||+||+|++++|+.
T Consensus 221 ~~~vP~~-~g~~~~~~as~~~~~~~~~-------~~-~~~~--~~~~~~~~~~~~~~~f~~p~~~~~~~~~ 280 (281)
T 1mjf_A 221 SFPVIGY-ASPWAFLVGVKGDIDFTKI-------DR-ERAK--KLQLEYYDPLMHETLFQMPKYIRETLQR 280 (281)
T ss_dssp EECCTTS-SSSEEEEEEEESSCCTTCC-------CH-HHHH--TSCCSSCCGGGGGGGGCCCHHHHHHHC-
T ss_pred EEecCCC-CceEEEEEeeCCCCCcccc-------ch-hhhh--ccCCcEECHHHHHHHhcCcHHHHHHHhh
Confidence 8899999 789999999997 443321 10 1111 1478999999999999999999999863
No 13
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=100.00 E-value=1.9e-45 Score=344.42 Aligned_cols=225 Identities=20% Similarity=0.255 Sum_probs=194.6
Q ss_pred cceeecccCCCCcccccccCCCCCCCceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHHhh
Q 019882 54 GWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIA 133 (334)
Q Consensus 54 ~wf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEmlv 133 (334)
+||+|.+ |||.+++++++++|++++|+||+|.|++++.+|++|+|||. |++++|++.|||||+
T Consensus 1 ~w~~e~~----------------~~~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~-q~~~~d~~~y~e~l~ 63 (262)
T 2cmg_A 1 MWITQEI----------------TPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQ-LLFKNFLHIESELLA 63 (262)
T ss_dssp CEEEEEE----------------ETTEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTE-EEEGGGTHHHHHHHH
T ss_pred CcEEEEc----------------CCCceEEEEEeeEEEeeECCCceEEEEECCCccEEEEEcCc-ccccchHHHHHHHHH
Confidence 4999974 38899999999999999999999999999999999999999 999999999999999
Q ss_pred hhccccCCChhh---------------------------------hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCC
Q 019882 134 HLPLCSIPSPKT---------------------------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRG 180 (334)
Q Consensus 134 h~pl~~hp~Pkr---------------------------------vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~ 180 (334)
|++++.|++|++ +|+++|+.+..++++||++++++||++|+ +
T Consensus 64 ~~~~~~~~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-----~ 138 (262)
T 2cmg_A 64 HMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-----K 138 (262)
T ss_dssp HHHHTTSSCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-----C
T ss_pred HHhhhcCCCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-----h
Confidence 999999999988 35566665433456899999999999987 4
Q ss_pred ceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeecCCC
Q 019882 181 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSG 260 (334)
Q Consensus 181 ~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g 260 (334)
+||+||+|++||.+ ||+.++++|+|||++++|.++++.+...++.+.++++++|+ .+.++...+|+ +|
T Consensus 139 ~fD~Ii~d~~dp~~---------~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~-~~~~~~~~vP~--~g 206 (262)
T 2cmg_A 139 KYDLIFCLQEPDIH---------RIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFS-VAMPFVAPLRI--LS 206 (262)
T ss_dssp CEEEEEESSCCCHH---------HHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCS-EEEEECCTTCT--TC
T ss_pred hCCEEEECCCChHH---------HHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCC-ceEEEEEccCC--Cc
Confidence 69999999988743 99999999999999999999998877789999999999999 78888788999 68
Q ss_pred cEEEEEeecCCCCC-CCCCCCCchhhccccccCCCCCceeCHHHHHHHhcCcHHHHHHhhcC
Q 019882 261 IIGFLICSTEGPHV-DFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVL 321 (334)
Q Consensus 261 ~w~f~laSk~~~~~-~~~~p~~~~~~~~~~~~~~~~lryYn~~ih~aaF~LP~~~~~~l~~~ 321 (334)
.|+|++|||+.+|. ++. .+ +.... .++||||+++|+|+|+||+|++++|++.
T Consensus 207 ~~~~~~as~~~~p~~~~~-----~~---~~~~~-~~~~~y~~~~h~~~f~lp~~~~~~l~~~ 259 (262)
T 2cmg_A 207 NKGYIYASFKTHPLKDLM-----TP---KIEAL-TSVRYYNEDIHRAAFALPKNLQEVFKDN 259 (262)
T ss_dssp CEEEEEEESSCCTTTTCC-----HH---HHTTC-CSCSSCCHHHHHHTTCCCHHHHHHGGGT
T ss_pred ccEEEEeeCCCCchhhcC-----Hh---Hhhcc-CCCcEECHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999987665 431 01 11111 4789999999999999999999999743
No 14
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=100.00 E-value=8.6e-45 Score=355.39 Aligned_cols=194 Identities=20% Similarity=0.318 Sum_probs=165.3
Q ss_pred CCCC---CceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHHhhhhccccCCChhh------
Q 019882 75 PMWP---GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT------ 145 (334)
Q Consensus 75 ~~~~---~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkr------ 145 (334)
.+|| |..++|+|+++||+++|+||+|+|++++.|||+|+|||.+|++|+| +.|||||+|+||+.|| ||+
T Consensus 137 ~~~p~sdg~~~~y~v~~vl~~~~S~yQ~I~V~es~~~Gr~L~LDG~~Q~te~D-~~Y~e~l~h~~l~~~~-pkrVLIIGg 214 (381)
T 3c6k_A 137 RYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAIMGSGKEDYT-GKDVLILGG 214 (381)
T ss_dssp CBCCCTTCCCBBCCEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTC-HHHHHHHTTTTCCCCT-TCEEEEEEC
T ss_pred ceeECCCCcEEEEEeEEEEEeCCCCCceEEEEEcCCcceEEEECCceeeeCCh-HHHHHHHHHHHhhcCC-CCeEEEECC
Confidence 4555 9999999999999999999999999999999999999999999999 5799999999998875 777
Q ss_pred ----------------------------hHHhhCcccccC-CCC---CCeEEEEchHHHHHhhC--CCCceeEEEECCCC
Q 019882 146 ----------------------------VSKKYFPELAVG-FED---PRVRLHIGDAVEFLRQV--PRGKYDAIIVDSSD 191 (334)
Q Consensus 146 ----------------------------vak~~fp~l~~~-~~d---pRv~viv~Dg~~fL~~~--~~~~yDvIIvD~~d 191 (334)
+||+|||.++.+ +++ ||++++++||++||++. ..++|||||+|++|
T Consensus 215 GdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D 294 (381)
T 3c6k_A 215 GDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 294 (381)
T ss_dssp TTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred CcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCC
Confidence 689999988753 554 56999999999999853 23589999999877
Q ss_pred C------CCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeE--EEEEeeecCCCcEE
Q 019882 192 P------VGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHY--AWASVPTYPSGIIG 263 (334)
Q Consensus 192 p------~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~--~~~~vPsyp~g~w~ 263 (334)
+ .+++..|||++||+.|+++|+|||++++|+++++.. +.++.+.++++++|+ .|.+ +.+.||||| |.|+
T Consensus 295 ~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~-~~~~~i~~tl~~vF~-~v~~~~~~~~VPSy~-~~W~ 371 (381)
T 3c6k_A 295 VPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLT-EALSLYEEQLGRLYC-PVEFSKEIVCVPSYL-ELWV 371 (381)
T ss_dssp SCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCH-HHHHHHHHHHTTSSS-CEEEEEEEECCGGGS-SCEE
T ss_pred CcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcch-hHHHHHHHHHHHhCC-cceEeeEEEEecCCC-Ccee
Confidence 3 345678999999999999999999999999999874 567899999999999 6655 357899999 5799
Q ss_pred EEEeecCCCC
Q 019882 264 FLICSTEGPH 273 (334)
Q Consensus 264 f~laSk~~~~ 273 (334)
|++|||+.+|
T Consensus 372 F~~aSK~~~P 381 (381)
T 3c6k_A 372 FYTVWKKAKP 381 (381)
T ss_dssp EEEEEECCC-
T ss_pred eeEEECCCCC
Confidence 9999998764
No 15
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=100.00 E-value=1.7e-39 Score=316.73 Aligned_cols=193 Identities=22% Similarity=0.368 Sum_probs=165.6
Q ss_pred CCCCC---CceEEEeeccEEEEeeCCCceEEEEEeCCceeEEEECCeEEeeccchhHHHHHhhhhccccCCChhh-----
Q 019882 74 NPMWP---GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKT----- 145 (334)
Q Consensus 74 ~~~~~---~~~~~~~v~~vL~~~~S~yQ~I~V~et~~~G~~L~LDG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkr----- 145 (334)
+++|| |..++++|+++||+++|+||+|.|+++..||++|+|||.+|++++| |.|||||+|+++ .||+|++
T Consensus 119 ~~~~~~~~~~~~~~~v~~vl~~~~S~yQ~I~V~es~~~G~~L~LDG~~q~te~D-~~YhE~l~~~~~-~~p~pkrVL~IG 196 (364)
T 2qfm_A 119 DRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAIMGSGK-EDYTGKDVLILG 196 (364)
T ss_dssp CCBCCCTTCCCBBCCEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTC-HHHHHHHTTTTC-CCCTTCEEEEEE
T ss_pred CceeEccCCcEEEEEeeeEEEeccCCCeeEEEEEeCCcceEEEECCEEeeecCc-hHHHHHHhhhhh-hCCCCCEEEEEE
Confidence 46788 6899999999999999999999999999999999999999999999 999999999998 7999998
Q ss_pred -----------------------------hHHhhCccccc-CCCCC---CeEEEEchHHHHHhhC--CCCceeEEEECCC
Q 019882 146 -----------------------------VSKKYFPELAV-GFEDP---RVRLHIGDAVEFLRQV--PRGKYDAIIVDSS 190 (334)
Q Consensus 146 -----------------------------vak~~fp~l~~-~~~dp---Rv~viv~Dg~~fL~~~--~~~~yDvIIvD~~ 190 (334)
+||+|||.++. .++|| |++++++||++||++. .+++||+||+|++
T Consensus 197 gG~G~~arellk~~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~ 276 (364)
T 2qfm_A 197 GGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLT 276 (364)
T ss_dssp CTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECC
T ss_pred CChhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCC
Confidence 68899998764 47776 8999999999999862 2468999999999
Q ss_pred C-CCCC-CcCCCCHHHHHHH----HHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeE--EEEEeeecCCCcE
Q 019882 191 D-PVGP-AQELVEKPFFDTI----AKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHY--AWASVPTYPSGII 262 (334)
Q Consensus 191 d-p~gp-a~~L~t~eFy~~v----~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~--~~~~vPsyp~g~w 262 (334)
+ |.++ +.+||+.+||+.+ +++|+|||++++|+++++. ++....+-+.+++.|+ .|.+ |.+.||+|++ .|
T Consensus 277 d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs~s~~~-~e~~~~~~~~l~~~F~-~v~~~~~~~~vPsy~~-~w 353 (364)
T 2qfm_A 277 AVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNL-TEALSLYEEQLGRLYC-PVEFSKEIVCVPSYLE-LW 353 (364)
T ss_dssp SSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTC-HHHHHHHHHHHTTSSS-CEEEEEEEECCGGGSS-CE
T ss_pred CcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEcCCcch-HHHHHHHHHHHHHhCC-ceEEeeEeeecCCchh-he
Confidence 9 8764 4469999999999 9999999999999999876 4444444445999999 7888 8899999996 99
Q ss_pred EEEEeecCC
Q 019882 263 GFLICSTEG 271 (334)
Q Consensus 263 ~f~laSk~~ 271 (334)
+|..|+|+.
T Consensus 354 ~f~~~~k~~ 362 (364)
T 2qfm_A 354 VFYTVWKKA 362 (364)
T ss_dssp EEEEEEECC
T ss_pred EeEEeeccc
Confidence 999999974
No 16
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=2e-27 Score=228.28 Aligned_cols=203 Identities=16% Similarity=0.134 Sum_probs=156.3
Q ss_pred CCCceEEEEEeCC--ceeEEEECCeEEeec------cchhHHHHHhhhhccc---cCCChh--h----------------
Q 019882 95 SEYQEVLVFESLA--YGKVLVLDGIVQLTE------KDECAYQEMIAHLPLC---SIPSPK--T---------------- 145 (334)
Q Consensus 95 S~yQ~I~V~et~~--~G~~L~LDG~iQ~te------~DEf~YhEmlvh~pl~---~hp~Pk--r---------------- 145 (334)
..|..++|..++. +|++|+|||.+|+++ ++||.|||||+|++++ .||+|+ +
T Consensus 29 ~~~~~~~~~~d~~~~~g~~L~lDG~~Qs~~~l~dP~~le~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la 108 (317)
T 3gjy_A 29 GEYSVIELEADSYTTDGWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFA 108 (317)
T ss_dssp CSSSEEEEEECSSSTTEEEEEETTEEEEEEETTCTTCCCSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHH
T ss_pred ceeeeEEEEecCCCCceEEEEECCEeEEEEECCCCcchhhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHH
Confidence 4455588888874 899999999999996 5899999999999998 799998 5
Q ss_pred -------------------hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHH
Q 019882 146 -------------------VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFD 206 (334)
Q Consensus 146 -------------------vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~ 206 (334)
+||++|+. ..++|++++++||++|++..++++||+||+|++++.+++.+|++.+||+
T Consensus 109 ~~~p~~~v~~VEidp~vi~~Ar~~~~~----~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~ 184 (317)
T 3gjy_A 109 DVYPQSRNTVVELDAELARLSREWFDI----PRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFE 184 (317)
T ss_dssp HHSTTCEEEEEESCHHHHHHHHHHSCC----CCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHH
T ss_pred HHCCCcEEEEEECCHHHHHHHHHhccc----cCCCceEEEECcHHHHHhhccCCCCCEEEECCCCccccchhhhHHHHHH
Confidence 35555542 2479999999999999987645789999999999998889999999999
Q ss_pred HHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEE--EEeecCCCCCCCCCCCCchh
Q 019882 207 TIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGF--LICSTEGPHVDFVNPINPIE 284 (334)
Q Consensus 207 ~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f--~laSk~~~~~~~~~p~~~~~ 284 (334)
.++++|+|||++++|..+.. ....++.++++|+++|+ .+..+...+|++. ..||+ ++||+...|..-. ...+
T Consensus 185 ~~~r~LkpgGvlv~~~~~~~-~~~~~~~~~~tL~~vF~-~v~~~~~~~~~~g-~~~gN~Vl~As~~plp~~~~---~~~~ 258 (317)
T 3gjy_A 185 HCHRGLAPGGLYVANCGDHS-DLRGAKSELAGMMEVFE-HVAVIADPPMLKG-RRYGNIILMGSDTEFFSSNS---TEAS 258 (317)
T ss_dssp HHHHHEEEEEEEEEEEEECT-TCHHHHHHHHHHHHHCS-EEEEEECHHHHTT-SSCEEEEEEEESSCCCCTTS---HHHH
T ss_pred HHHHhcCCCcEEEEEecCCc-chHHHHHHHHHHHHHCC-ceEEEEecCCCCC-CcCceEEEEEECCCCCcccc---cchH
Confidence 99999999999999987643 34568899999999999 6665544456553 35554 8899874322000 0112
Q ss_pred hcc-ccccCCCCCceeCHHHHHHH
Q 019882 285 KLE-GADKHKRELRFYNSEIHSAA 307 (334)
Q Consensus 285 ~~~-~~~~~~~~lryYn~~ih~aa 307 (334)
.+. +......+.+|++++.+++.
T Consensus 259 ~l~r~~~~~~~p~~~~~~~~l~~~ 282 (317)
T 3gjy_A 259 AITRELLGGGVPAQYKDESWVRKF 282 (317)
T ss_dssp HHHHHHTSSSSCCEEECHHHHHHH
T ss_pred HHHHHHcCCCCCeEEECHHHHHHH
Confidence 222 33345678999999987653
No 17
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.08 E-value=4.3e-06 Score=77.54 Aligned_cols=94 Identities=22% Similarity=0.319 Sum_probs=67.9
Q ss_pred CCeEEEEchHHHHHhhCCC---CceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPR---GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMIS 237 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~---~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~ 237 (334)
.+++++.+|+++.|.+..+ ..||+|++|.+.|..-+ .|++.+||+.+++.|+|||++++.+... .+.+
T Consensus 150 ~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p-~lw~~~~l~~l~~~L~pGG~l~tysaa~--------~vrr 220 (257)
T 2qy6_A 150 VTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNP-DMWTQNLFNAMARLARPGGTLATFTSAG--------FVRR 220 (257)
T ss_dssp EEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCG-GGCCHHHHHHHHHHEEEEEEEEESCCBH--------HHHH
T ss_pred eEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccCh-hhcCHHHHHHHHHHcCCCcEEEEEeCCH--------HHHH
Confidence 3677999999999987632 27999999998776433 7999999999999999999999866432 2334
Q ss_pred HHHHh-cCCceeEEEEEeeecCCCcEEEEEeecC
Q 019882 238 ICRET-FKGSVHYAWASVPTYPSGIIGFLICSTE 270 (334)
Q Consensus 238 tl~~v-F~~~v~~~~~~vPsyp~g~w~f~laSk~ 270 (334)
.|.++ |. + ..+|.++ +-...+.|.+.
T Consensus 221 ~L~~aGF~-v-----~~~~g~~-~kr~m~~a~~~ 247 (257)
T 2qy6_A 221 GLQEAGFT-M-----QKRKGFG-RKREMLCGVME 247 (257)
T ss_dssp HHHHHTEE-E-----EEECCST-TCCCEEEEEEC
T ss_pred HHHHCCCE-E-----EeCCCCC-CCCceEEEEec
Confidence 55554 54 2 3567764 34455566554
No 18
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.06 E-value=1.1e-05 Score=72.96 Aligned_cols=125 Identities=18% Similarity=0.313 Sum_probs=79.9
Q ss_pred CCeEEeeccchhHHHHHhhhhccccCCChhhhHHhhCcccccCCCCCCeEEEEchHHHHHhhC-----CCCceeEEEECC
Q 019882 115 DGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-----PRGKYDAIIVDS 189 (334)
Q Consensus 115 DG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkrvak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~-----~~~~yDvIIvD~ 189 (334)
++.+...+.++.... +|++++... ++ ++|++++.+|+.+++... ..++||+|++|.
T Consensus 95 ~~~v~~iD~~~~~~~----------------~a~~~~~~~--g~-~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~ 155 (237)
T 3c3y_A 95 DGKITAIDFDREAYE----------------IGLPFIRKA--GV-EHKINFIESDAMLALDNLLQGQESEGSYDFGFVDA 155 (237)
T ss_dssp TCEEEEEESCHHHHH----------------HHHHHHHHT--TC-GGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECS
T ss_pred CCEEEEEECCHHHHH----------------HHHHHHHHc--CC-CCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECC
Confidence 567777777663322 467766542 33 469999999999988653 135799999997
Q ss_pred CCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec----cchhhh----hh----HHHHHHHHHHHhcCCceeEEEEEeeec
Q 019882 190 SDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA----ESMWLH----TH----LIEDMISICRETFKGSVHYAWASVPTY 257 (334)
Q Consensus 190 ~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~----~sp~~~----~~----~~~~i~~tl~~vF~~~v~~~~~~vPsy 257 (334)
..+. ..+|++.+.+.|+|||+++... +.+... .. ..+.+.+..+.++. +.++..+.+|.+
T Consensus 156 ~~~~-------~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~-~~~~~~~~lp~~ 227 (237)
T 3c3y_A 156 DKPN-------YIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAA-DPRIEIVHLPLG 227 (237)
T ss_dssp CGGG-------HHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHH-CTTEEEEEECST
T ss_pred chHH-------HHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhc-CCCeEEEEEEeC
Confidence 5322 3679999999999999999742 222211 11 22333333334444 456667788875
Q ss_pred CCCcEEEEEeecC
Q 019882 258 PSGIIGFLICSTE 270 (334)
Q Consensus 258 p~g~w~f~laSk~ 270 (334)
. |++++.|.
T Consensus 228 d----G~~~~~~~ 236 (237)
T 3c3y_A 228 D----GITFCRRL 236 (237)
T ss_dssp T----CEEEEEEC
T ss_pred C----ceEEEEEc
Confidence 3 46777653
No 19
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=97.96 E-value=4e-05 Score=68.79 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=60.1
Q ss_pred CCeEEeeccchhHHHHHhhhhccccCCChhhhHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCC
Q 019882 115 DGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVG 194 (334)
Q Consensus 115 DG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkrvak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~g 194 (334)
+|.+...+.++.... .+++++... ++.++|++++.+|+.+++....+++||+|++|...+.
T Consensus 81 ~~~v~~vD~~~~~~~----------------~a~~~~~~~--g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~~~- 141 (221)
T 3dr5_A 81 NTTLTCIDPESEHQR----------------QAKALFREA--GYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPMD- 141 (221)
T ss_dssp TSEEEEECSCHHHHH----------------HHHHHHHHT--TCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCCTTT-
T ss_pred CCEEEEEECCHHHHH----------------HHHHHHHHc--CCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCcHHH-
Confidence 566666666663322 467766543 3434799999999999998764468999999975332
Q ss_pred CCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 195 PAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 195 pa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
..+|++.+.+.|+|||+++.
T Consensus 142 ------~~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 142 ------LKALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp ------HHHHHHHHHHHEEEEEEEEE
T ss_pred ------HHHHHHHHHHHcCCCcEEEE
Confidence 24699999999999999997
No 20
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=97.94 E-value=2e-05 Score=71.85 Aligned_cols=125 Identities=18% Similarity=0.286 Sum_probs=77.7
Q ss_pred CCeEEeeccchhHHHHHhhhhccccCCChhhhHHhhCcccccCCCCCCeEEEEchHHHHHhhCC-----CCceeEEEECC
Q 019882 115 DGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP-----RGKYDAIIVDS 189 (334)
Q Consensus 115 DG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkrvak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~-----~~~yDvIIvD~ 189 (334)
++.+-..+.++.... ++++++... ++ +++++++.+|+.+++.... .++||+|++|+
T Consensus 104 ~~~v~~iD~s~~~~~----------------~a~~~~~~~--g~-~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~ 164 (247)
T 1sui_A 104 DGKILAMDINKENYE----------------LGLPVIKKA--GV-DHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDA 164 (247)
T ss_dssp TCEEEEEESCCHHHH----------------HHHHHHHHT--TC-GGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECS
T ss_pred CCEEEEEECCHHHHH----------------HHHHHHHHc--CC-CCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcC
Confidence 566666666653322 467766543 23 4799999999999876431 35799999997
Q ss_pred CCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec----cchhhh----h-----hHHHHHHHHHHHhcCCceeEEEEEeee
Q 019882 190 SDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA----ESMWLH----T-----HLIEDMISICRETFKGSVHYAWASVPT 256 (334)
Q Consensus 190 ~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~----~sp~~~----~-----~~~~~i~~tl~~vF~~~v~~~~~~vPs 256 (334)
..+ ....|++.+.+.|+|||+++... +..... . ...+.+.+....++. ..++..+.+|.
T Consensus 165 ~~~-------~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~i~~~~~~l~~-~~~~~~~~lp~ 236 (247)
T 1sui_A 165 DKD-------NYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAV-DPRIEICMLPV 236 (247)
T ss_dssp CST-------THHHHHHHHHHHBCTTCCEEEECTTGGGGGGCCTTSCCCHHHHHHHHHHHHHHHHHHT-CTTBCCEEECS
T ss_pred chH-------HHHHHHHHHHHhCCCCeEEEEecCCcCCcccCCCccchhhhhhHHHHHHHHHHHHHhh-CCCeEEEEEec
Confidence 532 23679999999999999998632 322211 1 112233333334444 34555567887
Q ss_pred cCCCcEEEEEeecC
Q 019882 257 YPSGIIGFLICSTE 270 (334)
Q Consensus 257 yp~g~w~f~laSk~ 270 (334)
+. ||+++.|.
T Consensus 237 ~d----G~~l~~k~ 246 (247)
T 1sui_A 237 GD----GITICRRI 246 (247)
T ss_dssp TT----CEEEECBC
T ss_pred CC----ccEEEEEc
Confidence 53 47777653
No 21
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=97.93 E-value=3.4e-05 Score=73.47 Aligned_cols=97 Identities=23% Similarity=0.234 Sum_probs=71.3
Q ss_pred CCCC--eEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHH
Q 019882 159 EDPR--VRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMI 236 (334)
Q Consensus 159 ~dpR--v~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~ 236 (334)
++.+ ++++++|+++.|.+..+.++|+|+.|.+.|..- +.|.|.++|+.++++|+|||++++.+.. ..+.
T Consensus 162 ~~~~v~L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kN-PeLWs~e~f~~l~~~~~pgg~laTYtaa--------g~VR 232 (308)
T 3vyw_A 162 EGERLSLKVLLGDARKRIKEVENFKADAVFHDAFSPYKN-PELWTLDFLSLIKERIDEKGYWVSYSSS--------LSVR 232 (308)
T ss_dssp ECSSEEEEEEESCHHHHGGGCCSCCEEEEEECCSCTTTS-GGGGSHHHHHHHHTTEEEEEEEEESCCC--------HHHH
T ss_pred cCCcEEEEEEechHHHHHhhhcccceeEEEeCCCCcccC-cccCCHHHHHHHHHHhCCCcEEEEEeCc--------HHHH
Confidence 3454 567899999999987545799999999987643 4699999999999999999999986643 2334
Q ss_pred HHHHHh-cCCceeEEEEEeeecCCCcEEEEEeecCC
Q 019882 237 SICRET-FKGSVHYAWASVPTYPSGIIGFLICSTEG 271 (334)
Q Consensus 237 ~tl~~v-F~~~v~~~~~~vPsyp~g~w~f~laSk~~ 271 (334)
+.|.++ |. | ..+|-|+ +-.-.++|++..
T Consensus 233 R~L~~aGF~--V----~k~~G~g-~KReml~A~~~~ 261 (308)
T 3vyw_A 233 KSLLTLGFK--V----GSSREIG-RKRKGTVASLKA 261 (308)
T ss_dssp HHHHHTTCE--E----EEEECC----CEEEEEESSS
T ss_pred HHHHHCCCE--E----EecCCCC-CCCceeEEecCC
Confidence 556655 54 2 4578774 445678898753
No 22
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=97.80 E-value=7e-05 Score=67.93 Aligned_cols=110 Identities=18% Similarity=0.286 Sum_probs=67.5
Q ss_pred HHhhCcccccCCCCCCeEEEEchHHHHHhhCC-CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec---
Q 019882 147 SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP-RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA--- 222 (334)
Q Consensus 147 ak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~-~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~--- 222 (334)
+++.+... ++ +++++++.+|+.+++.... .++||+|++|...+. ...|++.+.+.|+|||+++...
T Consensus 104 a~~~~~~~--g~-~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~~~-------~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 104 ARENLQLA--GV-DQRVTLREGPALQSLESLGECPAFDLIFIDADKPN-------NPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp HHHHHHHT--TC-TTTEEEEESCHHHHHHTCCSCCCCSEEEECSCGGG-------HHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred HHHHHHHc--CC-CCcEEEEEcCHHHHHHhcCCCCCeEEEEECCchHH-------HHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 55555432 23 3699999999999988653 238999999985322 2469999999999999998632
Q ss_pred -cchhh---h---hhHHHHHHHHHHHhcCCceeEEEEEeeecC-CCcEEEEEeecC
Q 019882 223 -ESMWL---H---THLIEDMISICRETFKGSVHYAWASVPTYP-SGIIGFLICSTE 270 (334)
Q Consensus 223 -~sp~~---~---~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp-~g~w~f~laSk~ 270 (334)
+.... . ...++.+.+.+.+ ..++....+|... .+.=||++|.++
T Consensus 174 ~g~v~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~l~~~g~~~~DG~~i~~~~ 225 (248)
T 3tfw_A 174 DGEVVNPQSADERVQGVRQFIEMMGA----EPRLTATALQTVGTKGWDGFTLAWVN 225 (248)
T ss_dssp GGGGGCTTCCCHHHHHHHHHHHHHHH----CTTEEEEEEEECSTTCSEEEEEEEEC
T ss_pred CCcccCccccchHHHHHHHHHHHHhh----CCCEEEEEeecCCCCCCCeeEEEEEe
Confidence 11110 1 1223444444443 2233334454432 123489998876
No 23
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=97.72 E-value=6e-05 Score=66.39 Aligned_cols=110 Identities=18% Similarity=0.300 Sum_probs=66.7
Q ss_pred HHhhCcccccCCCCCCeEEEEchHHHHHhhCC---CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec-
Q 019882 147 SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP---RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA- 222 (334)
Q Consensus 147 ak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~---~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~- 222 (334)
+++.+... ++ +++++++.+|+.+++.... .++||+|++|...+ ...++++.+.+.|+|||+++...
T Consensus 99 a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 99 ARSNIERA--NL-NDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ-------NNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp HHHHHHHT--TC-TTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG-------GHHHHHHHHHHTCCTTCEEEEESC
T ss_pred HHHHHHHc--CC-CCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH-------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 55555432 22 4689999999998876531 14699999998632 22579999999999999998632
Q ss_pred ---cchh---hhh---hHHHHHHHHHHHhcCCceeEEEEEeee-cCCCcEEEEEeecC
Q 019882 223 ---ESMW---LHT---HLIEDMISICRETFKGSVHYAWASVPT-YPSGIIGFLICSTE 270 (334)
Q Consensus 223 ---~sp~---~~~---~~~~~i~~tl~~vF~~~v~~~~~~vPs-yp~g~w~f~laSk~ 270 (334)
+... ... ..++.+.+.+.+ -+ .+....+|. ...|.=||++|.++
T Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~~~~~~p~~~~~~~dG~~~~~~~ 222 (223)
T 3duw_A 169 VREGEVIDNTSNDPRVQGIRRFYELIAA-EP---RVSATALQTVGSKGYDGFIMAVVK 222 (223)
T ss_dssp SGGGGGGCTTCCCHHHHHHHHHHHHHHH-CT---TEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CcCCcccCccccchHHHHHHHHHHHHhh-CC---CeEEEEEeccCCCCCCeeEEEEEe
Confidence 1100 001 223444444443 22 344456676 22233478887653
No 24
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=97.54 E-value=0.00014 Score=66.01 Aligned_cols=106 Identities=14% Similarity=0.294 Sum_probs=65.7
Q ss_pred HHhhCcccccCCCCCCeEEEEchHHHHHhhCC----CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe-
Q 019882 147 SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP----RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM- 221 (334)
Q Consensus 147 ak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~----~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q- 221 (334)
+++.+... ++ +++++++.+|+.+++.... .++||+|++|...+ -..+|++.+.+.|+|||+++..
T Consensus 101 a~~~~~~~--g~-~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 101 AHPYWREA--KQ-EHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKT-------NYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp SHHHHHHT--TC-TTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHc--CC-CCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCChH-------HhHHHHHHHHHhcCCCeEEEEEC
Confidence 45554332 22 4699999999999887530 25799999997522 1246999999999999999972
Q ss_pred ---ccchh---h---hhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEEEEeecC
Q 019882 222 ---AESMW---L---HTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTE 270 (334)
Q Consensus 222 ---~~sp~---~---~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f~laSk~ 270 (334)
.+... . ....++.+.+.+.+ .-++..+.+|. | .|++++.|.
T Consensus 171 ~~~~g~v~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~lp~---~-dG~~~~~k~ 220 (242)
T 3r3h_A 171 IFWDGKVIDPNDTSGQTREIKKLNQVIKN----DSRVFVSLLAI---A-DGMFLVQPI 220 (242)
T ss_dssp SSSSSCSSCTTCCCHHHHHHHHHHHHHHT----CCSEEEEEESS---S-SCEEEEEEC
T ss_pred CccCCcccCccccChHHHHHHHHHHHHhh----CCCEEEEEEEc---c-CceEEEEEc
Confidence 22111 0 11224444444443 22344455665 2 367888775
No 25
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=97.53 E-value=7.2e-05 Score=65.47 Aligned_cols=108 Identities=15% Similarity=0.211 Sum_probs=65.8
Q ss_pred hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec---
Q 019882 146 VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA--- 222 (334)
Q Consensus 146 vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~--- 222 (334)
.+++.+... ++ +++++++.+|+.+++... ++ ||+|++|... -....+++.+.+.|+|||+++...
T Consensus 96 ~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~-~~-fD~v~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 96 HARRMLHDN--GL-IDRVELQVGDPLGIAAGQ-RD-IDILFMDCDV-------FNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp HHHHHHHHH--SG-GGGEEEEESCHHHHHTTC-CS-EEEEEEETTT-------SCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred HHHHHHHHC--CC-CceEEEEEecHHHHhccC-CC-CCEEEEcCCh-------hhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 355555432 22 468999999999998765 36 9999999642 234689999999999999999732
Q ss_pred -cchh--hhhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEEEEeecC
Q 019882 223 -ESMW--LHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTE 270 (334)
Q Consensus 223 -~sp~--~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f~laSk~ 270 (334)
+.+. ......+.+.+.+..++. ..++....+|.+ +||.++.|.
T Consensus 164 ~g~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~p~~----~G~~~~~~~ 209 (210)
T 3c3p_A 164 RGSVAESHEDPETAALREFNHHLSR-RRDFFTTIVPVG----NGVLLGYRL 209 (210)
T ss_dssp CC------------CCCHHHHHHTT-CTTEEEEEECST----TCEEEEEEC
T ss_pred cCcccCcccchHHHHHHHHHHHHhh-CCCeEEEEEecC----CceEEEEeC
Confidence 1111 011111222223333444 445555667764 467888764
No 26
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=97.51 E-value=0.00018 Score=64.43 Aligned_cols=64 Identities=25% Similarity=0.456 Sum_probs=48.9
Q ss_pred hHHhhCcccccCCCCCCeEEEEchHHHHHh-hCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 146 VSKKYFPELAVGFEDPRVRLHIGDAVEFLR-QVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 146 vak~~fp~l~~~~~dpRv~viv~Dg~~fL~-~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.|++.+... ++ +++++++.+|+.+++. .. +++||+|++|...+. ..+|++.+.+.|+|||+++.
T Consensus 110 ~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~-~~~fD~V~~~~~~~~-------~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 110 YAKQNLATY--HF-ENQVRIIEGNALEQFENVN-DKVYDMIFIDAAKAQ-------SKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp HHHHHHHHT--TC-TTTEEEEESCGGGCHHHHT-TSCEEEEEEETTSSS-------HHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHc--CC-CCcEEEEECCHHHHHHhhc-cCCccEEEEcCcHHH-------HHHHHHHHHHhcCCCeEEEE
Confidence 355655432 22 3699999999999887 55 468999999975332 35699999999999999997
No 27
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=97.33 E-value=0.00037 Score=62.36 Aligned_cols=109 Identities=17% Similarity=0.330 Sum_probs=66.0
Q ss_pred hHHhhCcccccCCCCCCeEEEEchHHHHHhhCC--C--CceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 146 VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP--R--GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 146 vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~--~--~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.|++.+... ++ +++++++.+|+.+++...+ + ++||+|++|...+. ..++++.+.+.|+|||+++..
T Consensus 112 ~a~~~~~~~--g~-~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~~~-------~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 112 IAKKYWQKA--GV-AEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRN-------YPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp HHHHHHHHH--TC-GGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCGGG-------HHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHc--CC-CCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCHHH-------HHHHHHHHHHHcCCCeEEEEe
Confidence 356655432 23 3689999999998876532 1 57999999975221 257999999999999999973
Q ss_pred c----cchhh---hhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEEEEeec
Q 019882 222 A----ESMWL---HTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICST 269 (334)
Q Consensus 222 ~----~sp~~---~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f~laSk 269 (334)
. +.+.. .....+.+.+....+.. ..++..+.+|... ||.++.|
T Consensus 182 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~lp~~d----G~~~~~~ 231 (232)
T 3cbg_A 182 NVLWHGKVTEVDPQEAQTQVLQQFNRDLAQ-DERVRISVIPLGD----GMTLALK 231 (232)
T ss_dssp CTTGGGGGGCSSCCSHHHHHHHHHHHHHTT-CTTEEEEEECSBT----CEEEEEE
T ss_pred CCCcCCccCCcccCChHHHHHHHHHHHHhh-CCCeEEEEEEcCC----eEEEEEe
Confidence 2 11110 11222333333333333 3455556778753 3666654
No 28
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=97.28 E-value=0.00054 Score=60.28 Aligned_cols=65 Identities=22% Similarity=0.495 Sum_probs=47.8
Q ss_pred hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCC----CceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 146 VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPR----GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 146 vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~----~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.+++.+... ++ +++++++.+|+.+++..... ++||+|++|.... -..++++.+.+.|+|||+++.
T Consensus 109 ~a~~~~~~~--g~-~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~ 177 (229)
T 2avd_A 109 LGRPLWRQA--EA-EHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKE-------NCSAYYERCLQLLRPGGILAV 177 (229)
T ss_dssp HHHHHHHHT--TC-TTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCST-------THHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHC--CC-CCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCCHH-------HHHHHHHHHHHHcCCCeEEEE
Confidence 355555432 22 46999999999988765311 5799999987522 125799999999999999987
No 29
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=97.15 E-value=0.00099 Score=59.43 Aligned_cols=77 Identities=23% Similarity=0.375 Sum_probs=58.0
Q ss_pred CCeEEEEchHHHHHhh-CCCCceeEEEECCCCCCCC----CcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQ-VPRGKYDAIIVDSSDPVGP----AQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 235 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~-~~~~~yDvIIvD~~dp~gp----a~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i 235 (334)
++++++.+|+.+++.. .++++||+|++..++|... ...+...+|++.+++.|+|||+++..+.... +...+
T Consensus 84 ~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~----~~~~~ 159 (218)
T 3dxy_A 84 SNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEP----YAEHM 159 (218)
T ss_dssp SSEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHH----HHHHH
T ss_pred CcEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHH----HHHHH
Confidence 4699999999998764 3457899999998888643 2457788999999999999999998665432 23444
Q ss_pred HHHHHH
Q 019882 236 ISICRE 241 (334)
Q Consensus 236 ~~tl~~ 241 (334)
...+.+
T Consensus 160 ~~~~~~ 165 (218)
T 3dxy_A 160 LEVMSS 165 (218)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 444443
No 30
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=97.12 E-value=0.00046 Score=61.68 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=64.4
Q ss_pred HHhhCcccccCCCCCCeEEEEchHHHHHhhCC--------------C-CceeEEEECCCCCCCCCcCCCCHHHHHHHHHh
Q 019882 147 SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP--------------R-GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA 211 (334)
Q Consensus 147 ak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~--------------~-~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~ 211 (334)
|++.+... ++ +++++++.+|+.+++.... + ++||+|++|...+. ..++++.+.+.
T Consensus 101 a~~~~~~~--g~-~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~-------~~~~l~~~~~~ 170 (239)
T 2hnk_A 101 ARKYWKEN--GL-ENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN-------YPNYYPLILKL 170 (239)
T ss_dssp HHHHHHHT--TC-GGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG-------HHHHHHHHHHH
T ss_pred HHHHHHHc--CC-CCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH-------HHHHHHHHHHH
Confidence 55555332 22 3589999999998876321 1 57999999964221 13799999999
Q ss_pred cCCCcEEEEec----cchh---hhhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEEEEeecC
Q 019882 212 LRPGGVLCNMA----ESMW---LHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTE 270 (334)
Q Consensus 212 L~~gGilv~q~----~sp~---~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f~laSk~ 270 (334)
|+|||+++... +... ......+.+.+....+.. ...+....+|..+ |+.++.|.
T Consensus 171 L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~----g~~~~~~~ 231 (239)
T 2hnk_A 171 LKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYN-DSLVDVSLVPIAD----GVSLVRKR 231 (239)
T ss_dssp EEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHH-CTTEEEEEECSTT----CEEEEEEC
T ss_pred cCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhh-CCCeEEEEEEcCC----ceEeeeeh
Confidence 99999999743 2111 111122222222222222 3345557788865 36677665
No 31
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.11 E-value=0.0006 Score=59.85 Aligned_cols=64 Identities=23% Similarity=0.507 Sum_probs=47.3
Q ss_pred HHhhCcccccCCCCCCeEEEEchHHHHHhhCCC----CceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 147 SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPR----GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 147 ak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~----~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+++.+... ++ +++++++.+|+.+++..... ++||+|++|...+ ...++++.+.+.|+|||+++.
T Consensus 105 a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~ 172 (225)
T 3tr6_A 105 AKEYWEKA--GL-SDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKA-------NTDLYYEESLKLLREGGLIAV 172 (225)
T ss_dssp HHHHHHHT--TC-TTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHC--CC-CCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCHH-------HHHHHHHHHHHhcCCCcEEEE
Confidence 55555332 22 36899999999998765321 5799999988521 125699999999999999986
No 32
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=97.11 E-value=0.00034 Score=62.96 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=48.8
Q ss_pred CCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCC-CCHHHHHHHHHhcCCCcEEEE
Q 019882 159 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQEL-VEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L-~t~eFy~~v~~~L~~gGilv~ 220 (334)
..++++++.+|+...+...+++.||+|+.|.........++ ....|++.++|.|||||+++.
T Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 106 QTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp CSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred CCCceEEEeehHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEE
Confidence 35689999999999988777788999999987544333333 235688999999999999985
No 33
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=96.97 E-value=0.0016 Score=56.96 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=55.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC----CcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP----AQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMI 236 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp----a~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~ 236 (334)
++++++.+|+..+....++++||+|+++.++|... ...+...+|++.+.+.|+|||+++..+.+.. ....+.
T Consensus 91 ~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~~~ 166 (214)
T 1yzh_A 91 PNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG----LFEYSL 166 (214)
T ss_dssp SSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH----HHHHHH
T ss_pred CCEEEEeCCHHHHHhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH----HHHHHH
Confidence 58999999998743223346799999998877532 2346778999999999999999998664432 234444
Q ss_pred HHHHH
Q 019882 237 SICRE 241 (334)
Q Consensus 237 ~tl~~ 241 (334)
+.+.+
T Consensus 167 ~~~~~ 171 (214)
T 1yzh_A 167 VSFSQ 171 (214)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44544
No 34
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=96.93 E-value=0.0021 Score=61.21 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=49.9
Q ss_pred CCCCCeEEEEchHHHHHhhCC--CCceeEEEECCCC-CCCCCcCCC-----CHHHHHHHHHhcCCCcEEEEe-ccchhhh
Q 019882 158 FEDPRVRLHIGDAVEFLRQVP--RGKYDAIIVDSSD-PVGPAQELV-----EKPFFDTIAKALRPGGVLCNM-AESMWLH 228 (334)
Q Consensus 158 ~~dpRv~viv~Dg~~fL~~~~--~~~yDvIIvD~~d-p~gpa~~L~-----t~eFy~~v~~~L~~gGilv~q-~~sp~~~ 228 (334)
+++.+++++.+|+.+++.... +++||+||+|.+- ..++...++ -.++++.+.+.|+|||+++.. ..+....
T Consensus 200 l~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~ 279 (332)
T 2igt_A 200 LEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRAS 279 (332)
T ss_dssp CTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSC
T ss_pred CCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCC
Confidence 444479999999999986421 3579999999752 111111111 257888999999999996543 3333333
Q ss_pred hhHHHHHHH
Q 019882 229 THLIEDMIS 237 (334)
Q Consensus 229 ~~~~~~i~~ 237 (334)
...+..+++
T Consensus 280 ~~~~~~~l~ 288 (332)
T 2igt_A 280 FYSMHELMR 288 (332)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444433
No 35
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=96.92 E-value=0.0016 Score=60.02 Aligned_cols=94 Identities=14% Similarity=0.138 Sum_probs=61.9
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccch--hhhhhHHHHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM--WLHTHLIEDMISI 238 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp--~~~~~~~~~i~~t 238 (334)
.+++++.+|+.+++. +++||+||+|.+. ...+|++.+.+.|+|||+++....++ ......+..+.+.
T Consensus 175 ~~v~~~~~D~~~~~~---~~~fD~Vi~~~p~--------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~ 243 (278)
T 2frn_A 175 DRMSAYNMDNRDFPG---ENIADRILMGYVV--------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRI 243 (278)
T ss_dssp TTEEEECSCTTTCCC---CSCEEEEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHH
T ss_pred ceEEEEECCHHHhcc---cCCccEEEECCch--------hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHH
Confidence 579999999998876 3589999998642 12579999999999999999765443 2223455666666
Q ss_pred HHHhcCCceeE-EEEEeeecCCCcEEEEE
Q 019882 239 CRETFKGSVHY-AWASVPTYPSGIIGFLI 266 (334)
Q Consensus 239 l~~vF~~~v~~-~~~~vPsyp~g~w~f~l 266 (334)
+++..- .+.. ....+..|..+.|-+++
T Consensus 244 ~~~~G~-~~~~~~~~~v~~~~p~~~h~~~ 271 (278)
T 2frn_A 244 TKEYGY-DVEKLNELKIKRYAPGVWHVVL 271 (278)
T ss_dssp HHHTTC-EEEEEEEEEEEEETTTEEEEEE
T ss_pred HHHcCC-eeEEeeeEEEEecCCCceEEEE
Confidence 665432 2222 12235556556665443
No 36
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=96.79 E-value=0.0026 Score=56.84 Aligned_cols=79 Identities=15% Similarity=0.010 Sum_probs=56.8
Q ss_pred CCeEEeeccchhHHHHHhhhhccccCCChhhhHHhhCcccccCC-CCCCeEEEEchHHH------------------HHh
Q 019882 115 DGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVSKKYFPELAVGF-EDPRVRLHIGDAVE------------------FLR 175 (334)
Q Consensus 115 DG~iQ~te~DEf~YhEmlvh~pl~~hp~Pkrvak~~fp~l~~~~-~dpRv~viv~Dg~~------------------fL~ 175 (334)
||.+.+.|.|+..+. .++++|... ++ ...|++++.+|+.+ |..
T Consensus 51 ~g~VvtvE~d~~~~~----------------~ar~~l~~~--g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~ 112 (202)
T 3cvo_A 51 GKHVTSVESDRAWAR----------------MMKAWLAAN--PPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPL 112 (202)
T ss_dssp TCEEEEEESCHHHHH----------------HHHHHHHHS--CCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHH
T ss_pred CCEEEEEeCCHHHHH----------------HHHHHHHHc--CCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhh
Confidence 899999999985554 367777543 23 14699999999653 332
Q ss_pred h---C-CCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 176 Q---V-PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 176 ~---~-~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+ . ..+.||+|++|+... .+++..+.+.|+|||+++.
T Consensus 113 ~i~~~~~~~~fDlIfIDg~k~---------~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 113 AVWRTEGFRHPDVVLVDGRFR---------VGCALATAFSITRPVTLLF 152 (202)
T ss_dssp GGGGCTTCCCCSEEEECSSSH---------HHHHHHHHHHCSSCEEEEE
T ss_pred hhhccccCCCCCEEEEeCCCc---------hhHHHHHHHhcCCCeEEEE
Confidence 1 2 125799999998422 3677778899999999986
No 37
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=96.76 E-value=0.0046 Score=54.47 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=50.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC----CcCCCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP----AQELVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp----a~~L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
++++++.+|+..+....+++.||.|++..++|... ...+...+|++.+++.|+|||.++..+.+
T Consensus 88 ~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~ 155 (213)
T 2fca_A 88 QNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155 (213)
T ss_dssp SSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred CCEEEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence 57999999998754323346799999988887643 23477899999999999999999986644
No 38
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=96.70 E-value=0.0065 Score=53.86 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=44.1
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCC-HHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE-KPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t-~eFy~~v~~~L~~gGilv~q 221 (334)
++++++.+|+.+.+...++++||+|+.|......+..+.-. ..+++.+++.|+|||+++..
T Consensus 108 ~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 108 HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred CCeEEEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 68999999999986655557899999985543111111111 25689999999999999853
No 39
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.61 E-value=0.0045 Score=52.94 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=45.6
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHH--hcCCCcEEEEeccc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK--ALRPGGVLCNMAES 224 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~--~L~~gGilv~q~~s 224 (334)
++++++.+|+.+++...++++||+|++|.+- .... -...++++.+.+ .|+|||+++.+...
T Consensus 93 ~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~--~~~~-~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 93 SGATLRRGAVAAVVAAGTTSPVDLVLADPPY--NVDS-ADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp SCEEEEESCHHHHHHHCCSSCCSEEEECCCT--TSCH-HHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CceEEEEccHHHHHhhccCCCccEEEECCCC--Ccch-hhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 6899999999999876545689999998641 1100 013568888888 99999999986643
No 40
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=96.60 E-value=0.0013 Score=61.70 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=53.3
Q ss_pred hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 146 VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 146 vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.++++|... ++.+++++++.||+.+.|.+.+.++||+|++|+- .+ -.+.++|+.+..+|+|||+++.
T Consensus 176 ~ar~n~~~~--gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD--~y----~~~~~~Le~~~p~L~pGGiIv~ 242 (282)
T 2wk1_A 176 EVRRNFRNY--DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD--LY----ESTWDTLTNLYPKVSVGGYVIV 242 (282)
T ss_dssp HHHHHHHHT--TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC--SH----HHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHc--CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC--cc----ccHHHHHHHHHhhcCCCEEEEE
Confidence 466776543 3546899999999999998875578999999983 11 1256899999999999999997
No 41
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=96.46 E-value=0.0032 Score=61.08 Aligned_cols=83 Identities=13% Similarity=0.237 Sum_probs=52.1
Q ss_pred CCCCCeEEEEchHHHHHhhC--CCCceeEEEECCCCC-CCCCcCCCC-----HHHHHHHHHhcCCCcEEEEeccchhhhh
Q 019882 158 FEDPRVRLHIGDAVEFLRQV--PRGKYDAIIVDSSDP-VGPAQELVE-----KPFFDTIAKALRPGGVLCNMAESMWLHT 229 (334)
Q Consensus 158 ~~dpRv~viv~Dg~~fL~~~--~~~~yDvIIvD~~dp-~gpa~~L~t-----~eFy~~v~~~L~~gGilv~q~~sp~~~~ 229 (334)
+++.+++++.+|+.+++... .+++||+||+|.+.- .+. ..+.. .++++.+.+.|+|||+++..+.+.....
T Consensus 260 ~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~-~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~ 338 (385)
T 2b78_A 260 LDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNK-KEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTV 338 (385)
T ss_dssp CCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCH
T ss_pred CCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCCh-hhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCH
Confidence 33338999999999988642 135799999997541 110 11111 2356677899999999998766555443
Q ss_pred hHHHHHHHHHHHhcC
Q 019882 230 HLIEDMISICRETFK 244 (334)
Q Consensus 230 ~~~~~i~~tl~~vF~ 244 (334)
+.+. +.+++.+.
T Consensus 339 ~~~~---~~i~~~~~ 350 (385)
T 2b78_A 339 SQFK---KQIEKGFG 350 (385)
T ss_dssp HHHH---HHHHHHHT
T ss_pred HHHH---HHHHHHHH
Confidence 3333 34444443
No 42
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=96.44 E-value=0.0023 Score=56.30 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=46.4
Q ss_pred HHhhCcccccCCCCCCeEEEEchHHHHHhhCCC----CceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 147 SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPR----GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 147 ak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~----~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
+++.+... ++ +++++++.+|+.+++..... ++||+|++|....... -..++++.+ +.|+|||+++..
T Consensus 99 a~~~~~~~--~~-~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~----~~~~~~~~~-~~LkpgG~lv~~ 169 (221)
T 3u81_A 99 TQQMLNFA--GL-QDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYL----PDTLLLEKC-GLLRKGTVLLAD 169 (221)
T ss_dssp HHHHHHHH--TC-GGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHH----HHHHHHHHT-TCCCTTCEEEES
T ss_pred HHHHHHHc--CC-CCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccch----HHHHHHHhc-cccCCCeEEEEe
Confidence 55554432 22 46899999999999877532 5899999997432211 112566666 999999999973
No 43
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=96.37 E-value=0.0041 Score=56.05 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=48.3
Q ss_pred CCCeEEEEchHHHHHhh-CCCCceeEEEECCCCCCCC----CcCCCCHHHHHHHHHhcCCCcEEEEeccch
Q 019882 160 DPRVRLHIGDAVEFLRQ-VPRGKYDAIIVDSSDPVGP----AQELVEKPFFDTIAKALRPGGVLCNMAESM 225 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~-~~~~~yDvIIvD~~dp~gp----a~~L~t~eFy~~v~~~L~~gGilv~q~~sp 225 (334)
.++++++.+|+.+++.. .++++||.|++..+||.-. -..+....|++.+++.|+|||+++..+...
T Consensus 101 ~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~ 171 (235)
T 3ckk_A 101 FQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL 171 (235)
T ss_dssp CTTEEEEECCTTTCHHHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred CCeEEEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH
Confidence 36899999999876642 2346899999988887632 235667899999999999999999876543
No 44
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=96.28 E-value=0.0047 Score=55.56 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=42.7
Q ss_pred CCCeEEEEchHHHH--HhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHH-hcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEF--LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK-ALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~f--L~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~-~L~~gGilv~q~ 222 (334)
.++++++.+|+.++ +....+..||+|++|+... --.++++.+.+ .|+|||+++...
T Consensus 129 ~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~~~-------~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 129 MENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHA-------NTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp CTTEEEEECCSSCSGGGGGGSSSCSSEEEEESSCS-------SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred CCceEEEECcchhHHHHHhhccCCCCEEEECCchH-------hHHHHHHHHHHhhCCCCCEEEEEe
Confidence 37899999999875 4433223699999998621 23578999997 999999999853
No 45
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=96.27 E-value=0.0057 Score=63.41 Aligned_cols=65 Identities=23% Similarity=0.489 Sum_probs=52.8
Q ss_pred CCCC--CeEEEEchHHHHHhhCC---CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 158 FEDP--RVRLHIGDAVEFLRQVP---RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 158 ~~dp--Rv~viv~Dg~~fL~~~~---~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
|++. +++++++|+++.|++.. +.++|+|++|.+.|..- ..|.+.+||..+.+.+++||.+++.+.
T Consensus 143 ~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~n-p~~w~~~~~~~l~~~~~~g~~~~t~~~ 212 (689)
T 3pvc_A 143 LADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKN-PDMWNEQLFNAMARMTRPGGTFSTFTA 212 (689)
T ss_dssp ETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--C-CTTCSHHHHHHHHHHEEEEEEEEESCC
T ss_pred ecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCC-hhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence 4554 67789999999998753 35799999999988643 359999999999999999999998653
No 46
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=96.26 E-value=0.0046 Score=63.83 Aligned_cols=62 Identities=27% Similarity=0.486 Sum_probs=52.4
Q ss_pred CCeEEEEchHHHHHhhCC---CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 161 PRVRLHIGDAVEFLRQVP---RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~---~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
-+++++++|+++.|.+.. ..++|+|+.|.+.|.-- ..|.|.++|+.+.+.+++||.+++.+.
T Consensus 156 ~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~n-p~~w~~~~~~~l~~~~~~g~~~~t~~~ 220 (676)
T 3ps9_A 156 VTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKN-PDMWTQNLFNAMARLARPGGTLATFTS 220 (676)
T ss_dssp EEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGC-GGGSCHHHHHHHHHHEEEEEEEEESCC
T ss_pred EEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCC-hhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence 467789999999998763 35799999999987532 469999999999999999999998653
No 47
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=96.24 E-value=0.024 Score=50.47 Aligned_cols=98 Identities=7% Similarity=0.013 Sum_probs=61.7
Q ss_pred CCeEEEEchHHHHHhh-CCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQ-VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISIC 239 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~-~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl 239 (334)
++++++.+|+.++... ..+++||+|+.+.... -..+++.+.+.|+|||+++...+... .+.+..+.+.+
T Consensus 120 ~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~g~~~--~~~~~~~~~~l 189 (240)
T 1xdz_A 120 ENTTFCHDRAETFGQRKDVRESYDIVTARAVAR--------LSVLSELCLPLVKKNGLFVALKAASA--EEELNAGKKAI 189 (240)
T ss_dssp SSEEEEESCHHHHTTCTTTTTCEEEEEEECCSC--------HHHHHHHHGGGEEEEEEEEEEECC-C--HHHHHHHHHHH
T ss_pred CCEEEEeccHHHhcccccccCCccEEEEeccCC--------HHHHHHHHHHhcCCCCEEEEEeCCCc--hHHHHHHHHHH
Confidence 3699999999887532 1135899999977321 25799999999999999997644322 22344555555
Q ss_pred HHh-cCCceeEEEEEeeecCCCcEEEEEeecC
Q 019882 240 RET-FKGSVHYAWASVPTYPSGIIGFLICSTE 270 (334)
Q Consensus 240 ~~v-F~~~v~~~~~~vPsyp~g~w~f~laSk~ 270 (334)
++. |. .+......+|.- .+.+.+++..|.
T Consensus 190 ~~~g~~-~~~~~~~~~~~~-~~~~~l~~~~k~ 219 (240)
T 1xdz_A 190 TTLGGE-LENIHSFKLPIE-ESDRNIMVIRKI 219 (240)
T ss_dssp HHTTEE-EEEEEEEECTTT-CCEEEEEEEEEC
T ss_pred HHcCCe-EeEEEEEecCCC-CCceEEEEEEec
Confidence 553 43 223222233432 356777777765
No 48
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=96.12 E-value=0.012 Score=49.33 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=54.1
Q ss_pred CCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHH
Q 019882 158 FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMIS 237 (334)
Q Consensus 158 ~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~ 237 (334)
++++|++++.+|..+.+. +++||+|+++..-..+ .-....+++.+.+.|+|||+++....+.. ....+.+
T Consensus 99 ~~~~~~~~~~~d~~~~~~---~~~~D~v~~~~~~~~~---~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----~~~~~~~ 168 (194)
T 1dus_A 99 LDNYDIRVVHSDLYENVK---DRKYNKIITNPPIRAG---KEVLHRIIEEGKELLKDNGEIWVVIQTKQ----GAKSLAK 168 (194)
T ss_dssp CTTSCEEEEECSTTTTCT---TSCEEEEEECCCSTTC---HHHHHHHHHHHHHHEEEEEEEEEEEESTH----HHHHHHH
T ss_pred CCccceEEEECchhcccc---cCCceEEEECCCcccc---hhHHHHHHHHHHHHcCCCCEEEEEECCCC----ChHHHHH
Confidence 334479999999887654 3579999997531110 01125799999999999999998654432 2344666
Q ss_pred HHHHhcCCcee
Q 019882 238 ICRETFKGSVH 248 (334)
Q Consensus 238 tl~~vF~~~v~ 248 (334)
.+++.|. .+.
T Consensus 169 ~l~~~~~-~~~ 178 (194)
T 1dus_A 169 YMKDVFG-NVE 178 (194)
T ss_dssp HHHHHHS-CCE
T ss_pred HHHHHhc-ceE
Confidence 6777787 444
No 49
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=96.12 E-value=0.021 Score=51.53 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=49.9
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCC-CC---CC--C---cC-------CCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PV---GP--A---QE-------LVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~---gp--a---~~-------L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
+.|++++.+|+.++....+.++||+||.|.+= +. +. + .. .--.+|++.+.+.|+|||.++.-..
T Consensus 98 ~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 177 (259)
T 3lpm_A 98 EDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR 177 (259)
T ss_dssp TTTEEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence 35899999999998765445689999997531 00 00 0 00 1124799999999999999997321
Q ss_pred chhhhhhHHHHHHHHHHH
Q 019882 224 SMWLHTHLIEDMISICRE 241 (334)
Q Consensus 224 sp~~~~~~~~~i~~tl~~ 241 (334)
+ .....+...+++
T Consensus 178 -~----~~~~~~~~~l~~ 190 (259)
T 3lpm_A 178 -P----ERLLDIIDIMRK 190 (259)
T ss_dssp -T----TTHHHHHHHHHH
T ss_pred -H----HHHHHHHHHHHH
Confidence 1 223445555665
No 50
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=96.05 E-value=0.0054 Score=54.77 Aligned_cols=72 Identities=26% Similarity=0.423 Sum_probs=51.7
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHH
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISIC 239 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl 239 (334)
+.|++++.+|+.+.+. +++||+|++|.++| .++++.+.+.|+|||.++....+. .....+.+.+
T Consensus 144 ~~~v~~~~~d~~~~~~---~~~~D~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~l 207 (255)
T 3mb5_A 144 DDRVTIKLKDIYEGIE---EENVDHVILDLPQP---------ERVVEHAAKALKPGGFFVAYTPCS----NQVMRLHEKL 207 (255)
T ss_dssp TTTEEEECSCGGGCCC---CCSEEEEEECSSCG---------GGGHHHHHHHEEEEEEEEEEESSH----HHHHHHHHHH
T ss_pred CCceEEEECchhhccC---CCCcCEEEECCCCH---------HHHHHHHHHHcCCCCEEEEEECCH----HHHHHHHHHH
Confidence 3579999999986642 45799999987655 358999999999999999754322 2244555666
Q ss_pred HHh---cCCcee
Q 019882 240 RET---FKGSVH 248 (334)
Q Consensus 240 ~~v---F~~~v~ 248 (334)
++. |. .+.
T Consensus 208 ~~~g~~f~-~~~ 218 (255)
T 3mb5_A 208 REFKDYFM-KPR 218 (255)
T ss_dssp HHTGGGBS-CCE
T ss_pred HHcCCCcc-ccE
Confidence 654 76 443
No 51
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=96.00 E-value=0.0042 Score=58.44 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=46.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 240 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~ 240 (334)
++++++.+|+.+.+...+++.||+||+|..+|.. +++.+.+.|+|||.+++...+. ..+...++.++
T Consensus 167 ~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~---------~l~~~~~~LkpgG~lv~~~~~~----~~~~~~~~~l~ 233 (336)
T 2b25_A 167 DNVDFIHKDISGATEDIKSLTFDAVALDMLNPHV---------TLPVFYPHLKHGGVCAVYVVNI----TQVIELLDGIR 233 (336)
T ss_dssp CCEEEEESCTTCCC-------EEEEEECSSSTTT---------THHHHGGGEEEEEEEEEEESSH----HHHHHHHHHHH
T ss_pred CceEEEECChHHcccccCCCCeeEEEECCCCHHH---------HHHHHHHhcCCCcEEEEEeCCH----HHHHHHHHHHH
Confidence 6899999999876533334579999999866532 7899999999999999755332 23445556665
Q ss_pred H
Q 019882 241 E 241 (334)
Q Consensus 241 ~ 241 (334)
+
T Consensus 234 ~ 234 (336)
T 2b25_A 234 T 234 (336)
T ss_dssp H
T ss_pred h
Confidence 5
No 52
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=95.97 E-value=0.012 Score=52.80 Aligned_cols=64 Identities=19% Similarity=0.411 Sum_probs=49.8
Q ss_pred CCeEEEEchHHHHHhhC-CCCceeEEEECCCCCCCC----CcCCCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 161 PRVRLHIGDAVEFLRQV-PRGKYDAIIVDSSDPVGP----AQELVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~-~~~~yDvIIvD~~dp~gp----a~~L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
++++++.+|+.+++... ....+|.|++..++|... ...+...+|++.+.+.|+|||+++..+..
T Consensus 107 ~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 107 QNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp TTEEEEECCTTSCGGGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CcEEEEeccHHHHHHHhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 57999999999877642 346899999888777532 23556689999999999999999986543
No 53
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=95.93 E-value=0.0085 Score=56.72 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=49.3
Q ss_pred CCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCc---C-------CCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 158 FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQ---E-------LVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 158 ~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~---~-------L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
+...+.+++.+|+++.|+..+++++|+|++|.+=..+... . -+..+.++.+++.|+|||.++...+.
T Consensus 10 ~~~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d 86 (323)
T 1boo_A 10 YTTSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 86 (323)
T ss_dssp EECSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred eecCCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence 4567899999999999987766789999999752111100 0 02356778889999999999986654
No 54
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=95.90 E-value=0.017 Score=55.91 Aligned_cols=81 Identities=21% Similarity=0.306 Sum_probs=52.0
Q ss_pred CeEEEEchHHHHHhhCC--CCceeEEEECCCCCCCCCcCC-----CCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHH
Q 019882 162 RVRLHIGDAVEFLRQVP--RGKYDAIIVDSSDPVGPAQEL-----VEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIED 234 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~--~~~yDvIIvD~~dp~gpa~~L-----~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~ 234 (334)
+++++.+|+.+++.... +++||+||+|.+.-......+ --.+++..+.+.|+|||+++..+.+.....+.+..
T Consensus 272 ~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 351 (396)
T 3c0k_A 272 KAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQK 351 (396)
T ss_dssp GEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHH
T ss_pred ceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHH
Confidence 89999999999986421 357999999975311111111 12578888999999999999766554443333333
Q ss_pred HH-HHHHHh
Q 019882 235 MI-SICRET 242 (334)
Q Consensus 235 i~-~tl~~v 242 (334)
++ +.+.+.
T Consensus 352 ~i~~~~~~~ 360 (396)
T 3c0k_A 352 IIADAAIDA 360 (396)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 33 344443
No 55
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=95.88 E-value=0.013 Score=57.18 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=46.9
Q ss_pred EEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCC-----CCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHH
Q 019882 164 RLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQEL-----VEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMI 236 (334)
Q Consensus 164 ~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L-----~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~ 236 (334)
+++.+|+++++.... +.||+||+|.+.=......+ .-.++++.+.+.|+|||+++..+.++....+.+..++
T Consensus 264 ~~~~~D~~~~l~~~~-~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v 340 (393)
T 4dmg_A 264 DIRHGEALPTLRGLE-GPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVA 340 (393)
T ss_dssp EEEESCHHHHHHTCC-CCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred cEEEccHHHHHHHhc-CCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHH
Confidence 577999999998764 34999999964200000111 1147888899999999999965555554443333333
No 56
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=95.84 E-value=0.015 Score=51.36 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=41.8
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
+++++++.+|..+.+. +++.||+||.|..+| .++++.+.+.|+|||.++....+
T Consensus 139 ~~~~~~~~~d~~~~~~--~~~~~D~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 139 GKNVKFFNVDFKDAEV--PEGIFHAAFVDVREP---------WHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp CTTEEEECSCTTTSCC--CTTCBSEEEECSSCG---------GGGHHHHHHHBCTTCEEEEEESS
T ss_pred CCcEEEEEcChhhccc--CCCcccEEEECCcCH---------HHHHHHHHHHcCCCCEEEEEeCC
Confidence 4789999999877541 235799999987644 35889999999999999986543
No 57
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=95.82 E-value=0.0071 Score=51.74 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=56.0
Q ss_pred CeEEEEchHHHHHhh--CCCCceeEEEECCCC-CCCC----Cc---------CCC--------CHHHHHHHHHhcCCCcE
Q 019882 162 RVRLHIGDAVEFLRQ--VPRGKYDAIIVDSSD-PVGP----AQ---------ELV--------EKPFFDTIAKALRPGGV 217 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~--~~~~~yDvIIvD~~d-p~gp----a~---------~L~--------t~eFy~~v~~~L~~gGi 217 (334)
+++++.+|+.+.+.. ...++||+|+.|.+= +... .. .+. -..|++.+++.|+|||+
T Consensus 80 ~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 159 (215)
T 4dzr_A 80 VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRA 159 (215)
T ss_dssp ---CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSE
T ss_pred ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCe
Confidence 789999999998765 112579999997531 1000 00 000 06788999999999999
Q ss_pred -EEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEEEEeecC
Q 019882 218 -LCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTE 270 (334)
Q Consensus 218 -lv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f~laSk~ 270 (334)
++.... ......+..+++.+..-|. .+. ..+.+. |...++++.+.
T Consensus 160 l~~~~~~--~~~~~~~~~~l~~~~~gf~-~~~----~~~~~~-~~~r~~~~~~~ 205 (215)
T 4dzr_A 160 GVFLEVG--HNQADEVARLFAPWRERGF-RVR----KVKDLR-GIDRVIAVTRE 205 (215)
T ss_dssp EEEEECT--TSCHHHHHHHTGGGGGGTE-ECC----EEECTT-SCEEEEEEEEC
T ss_pred EEEEEEC--CccHHHHHHHHHHhhcCCc-eEE----EEEecC-CCEEEEEEEEc
Confidence 665432 2222333333332234465 333 234554 55677887765
No 58
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=95.82 E-value=0.016 Score=49.93 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=50.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 240 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~ 240 (334)
++++++.+|+.+.+... ..||+|+++...+ ...++++.+.+.|+|||.++...... .....+.+.++
T Consensus 90 ~~v~~~~~d~~~~~~~~--~~~D~i~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~l~ 156 (204)
T 3e05_A 90 RNVTLVEAFAPEGLDDL--PDPDRVFIGGSGG-------MLEEIIDAVDRRLKSEGVIVLNAVTL----DTLTKAVEFLE 156 (204)
T ss_dssp TTEEEEECCTTTTCTTS--CCCSEEEESCCTT-------CHHHHHHHHHHHCCTTCEEEEEECBH----HHHHHHHHHHH
T ss_pred CcEEEEeCChhhhhhcC--CCCCEEEECCCCc-------CHHHHHHHHHHhcCCCeEEEEEeccc----ccHHHHHHHHH
Confidence 68999999998777543 4699999997543 33579999999999999999854322 12344555555
Q ss_pred Hh
Q 019882 241 ET 242 (334)
Q Consensus 241 ~v 242 (334)
+.
T Consensus 157 ~~ 158 (204)
T 3e05_A 157 DH 158 (204)
T ss_dssp HT
T ss_pred HC
Confidence 54
No 59
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=95.75 E-value=0.014 Score=56.21 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=51.5
Q ss_pred CeEEEEchHHHHHhhC--CCCceeEEEECCCCCCCCCcCC-----CCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHH
Q 019882 162 RVRLHIGDAVEFLRQV--PRGKYDAIIVDSSDPVGPAQEL-----VEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIED 234 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~--~~~~yDvIIvD~~dp~gpa~~L-----~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~ 234 (334)
+++++.+|+.+++... .+++||+||+|.+.-......+ --.+++..+.+.|+|||+++..+.+.....+.+..
T Consensus 258 ~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 337 (382)
T 1wxx_A 258 NVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYA 337 (382)
T ss_dssp TEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHH
T ss_pred CceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHH
Confidence 3999999999998642 1358999999875311001111 11468889999999999999866555444333333
Q ss_pred HH-HHHHHh
Q 019882 235 MI-SICRET 242 (334)
Q Consensus 235 i~-~tl~~v 242 (334)
++ +.+.+.
T Consensus 338 ~i~~~~~~~ 346 (382)
T 1wxx_A 338 MVAEAAQDA 346 (382)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 33 344433
No 60
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=95.71 E-value=0.014 Score=51.80 Aligned_cols=70 Identities=21% Similarity=0.434 Sum_probs=49.5
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHH
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISIC 239 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl 239 (334)
.++++++.+|+.+. ..++++||+|++|..++ .++++.+.+.|+|||.++....+. .....+.+.+
T Consensus 147 ~~~v~~~~~d~~~~--~~~~~~~D~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~l 211 (258)
T 2pwy_A 147 VENVRFHLGKLEEA--ELEEAAYDGVALDLMEP---------WKVLEKAALALKPDRFLVAYLPNI----TQVLELVRAA 211 (258)
T ss_dssp CCCEEEEESCGGGC--CCCTTCEEEEEEESSCG---------GGGHHHHHHHEEEEEEEEEEESCH----HHHHHHHHHH
T ss_pred CCCEEEEECchhhc--CCCCCCcCEEEECCcCH---------HHHHHHHHHhCCCCCEEEEEeCCH----HHHHHHHHHH
Confidence 47899999998775 12235799999987654 258999999999999999755332 2344555556
Q ss_pred HHh-cC
Q 019882 240 RET-FK 244 (334)
Q Consensus 240 ~~v-F~ 244 (334)
++. |.
T Consensus 212 ~~~gf~ 217 (258)
T 2pwy_A 212 EAHPFR 217 (258)
T ss_dssp TTTTEE
T ss_pred HHCCCc
Confidence 543 54
No 61
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=95.68 E-value=0.004 Score=55.06 Aligned_cols=65 Identities=26% Similarity=0.551 Sum_probs=47.5
Q ss_pred HHhhCcccccCCCCCCeEEEEchHHHHHhhCC-CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 147 SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP-RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 147 ak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~-~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
|++.+... ++ +++++++.+|+.+++.... +++||+||+|...+ ...++++.+.+.|+|||+++..
T Consensus 94 a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 94 AHKHVKAL--GL-ESRIELLFGDALQLGEKLELYPLFDVLFIDAAKG-------QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp HHHHHHHT--TC-TTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGGS-------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHc--CC-CCcEEEEECCHHHHHHhcccCCCccEEEECCCHH-------HHHHHHHHHHHHcCCCeEEEEE
Confidence 55554332 22 3689999999988765431 25799999987532 2357999999999999999873
No 62
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=95.65 E-value=0.0089 Score=52.06 Aligned_cols=58 Identities=14% Similarity=0.285 Sum_probs=42.5
Q ss_pred CCeEEEEchHHHHHhhCCCCc-eeEEEECCCCCCCCCcCCCCHHHHHHH--HHhcCCCcEEEEecc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGK-YDAIIVDSSDPVGPAQELVEKPFFDTI--AKALRPGGVLCNMAE 223 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~-yDvIIvD~~dp~gpa~~L~t~eFy~~v--~~~L~~gGilv~q~~ 223 (334)
++++++.+|+.+++....+++ ||+|++|.+ ... -...++++.+ .+.|+|||+++....
T Consensus 104 ~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~--~~~---~~~~~~l~~~~~~~~LkpgG~l~i~~~ 164 (201)
T 2ift_A 104 EQAEVINQSSLDFLKQPQNQPHFDVVFLDPP--FHF---NLAEQAISLLCENNWLKPNALIYVETE 164 (201)
T ss_dssp TTEEEECSCHHHHTTSCCSSCCEEEEEECCC--SSS---CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cceEEEECCHHHHHHhhccCCCCCEEEECCC--CCC---ccHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 689999999999886533468 999999865 111 1124677777 557999999987553
No 63
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=95.61 E-value=0.03 Score=48.97 Aligned_cols=54 Identities=26% Similarity=0.278 Sum_probs=40.2
Q ss_pred CCeEEEEchHHHHH--hhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFL--RQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL--~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++++++.+|+.... ... .++||+|+.|...+. ....+++.+.+.|+|||.++..
T Consensus 122 ~~v~~~~~d~~~~~~~~~~-~~~~D~v~~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 122 RNIVPILGDATKPEEYRAL-VPKVDVIFEDVAQPT------QAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp TTEEEEECCTTCGGGGTTT-CCCEEEEEECCCSTT------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEEccCCCcchhhcc-cCCceEEEECCCCHh------HHHHHHHHHHHhcCCCCEEEEE
Confidence 78999999987632 222 357999999876322 1235699999999999998863
No 64
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=95.59 E-value=0.016 Score=55.02 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=48.2
Q ss_pred CCCCeEEE-EchHHHHHhhCCCCceeEEEECCCCCCCC-----CcC--CCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 159 EDPRVRLH-IGDAVEFLRQVPRGKYDAIIVDSSDPVGP-----AQE--LVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 159 ~dpRv~vi-v~Dg~~fL~~~~~~~yDvIIvD~~dp~gp-----a~~--L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
.+...+|+ .+|++++|+..+++++|+|++|.+=..+. ... -+..+.+..+++.|+|||++++..+.
T Consensus 35 ~~~~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~ 108 (319)
T 1eg2_A 35 IGTTRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL 108 (319)
T ss_dssp -CCEEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred CcccceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCc
Confidence 35668888 99999999987667899999998532220 000 03356777889999999999987653
No 65
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=95.57 E-value=0.035 Score=46.32 Aligned_cols=71 Identities=27% Similarity=0.342 Sum_probs=51.3
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 240 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~ 240 (334)
++++++.+|..+.+... ++||+||++.... . ..++++.+.+.|+|||.++....++ .....+.+.++
T Consensus 82 ~~~~~~~~d~~~~~~~~--~~~D~v~~~~~~~-----~--~~~~l~~~~~~l~~gG~l~~~~~~~----~~~~~~~~~l~ 148 (192)
T 1l3i_A 82 DNVTLMEGDAPEALCKI--PDIDIAVVGGSGG-----E--LQEILRIIKDKLKPGGRIIVTAILL----ETKFEAMECLR 148 (192)
T ss_dssp TTEEEEESCHHHHHTTS--CCEEEEEESCCTT-----C--HHHHHHHHHHTEEEEEEEEEEECBH----HHHHHHHHHHH
T ss_pred cceEEEecCHHHhcccC--CCCCEEEECCchH-----H--HHHHHHHHHHhcCCCcEEEEEecCc----chHHHHHHHHH
Confidence 68999999999877653 4799999986421 1 2789999999999999998754332 23445556666
Q ss_pred Hh-cC
Q 019882 241 ET-FK 244 (334)
Q Consensus 241 ~v-F~ 244 (334)
+. |.
T Consensus 149 ~~g~~ 153 (192)
T 1l3i_A 149 DLGFD 153 (192)
T ss_dssp HTTCC
T ss_pred HCCCc
Confidence 54 64
No 66
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=95.56 E-value=0.025 Score=47.02 Aligned_cols=53 Identities=23% Similarity=0.194 Sum_probs=41.0
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
.++ ++.+|+.+.+... .++||+|++...-.. .++++.+.+.|+|||.++....
T Consensus 76 ~~~-~~~~d~~~~~~~~-~~~~D~i~~~~~~~~--------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 76 DRI-AVQQGAPRAFDDV-PDNPDVIFIGGGLTA--------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp TSE-EEECCTTGGGGGC-CSCCSEEEECC-TTC--------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCE-EEecchHhhhhcc-CCCCCEEEECCcccH--------HHHHHHHHHhcCCCCEEEEEee
Confidence 488 8889988777654 268999998764322 5799999999999999997553
No 67
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=95.54 E-value=0.04 Score=50.46 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=58.9
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhh-hhhHHHHHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWL-HTHLIEDMISIC 239 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~-~~~~~~~i~~tl 239 (334)
++++++.+|+.++ .. .++||+||+|.+. -..++++.+.+.|+|||+++..+..... ..+.....++.+
T Consensus 169 ~~~~~~~~d~~~~-~~--~~~~D~Vi~d~p~--------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~ 237 (272)
T 3a27_A 169 NNVIPILADNRDV-EL--KDVADRVIMGYVH--------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFY 237 (272)
T ss_dssp SSEEEEESCGGGC-CC--TTCEEEEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHH
T ss_pred CCEEEEECChHHc-Cc--cCCceEEEECCcc--------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHH
Confidence 4689999999987 43 3689999999753 2246899999999999999864432211 113455666666
Q ss_pred HHhcCCceeEE-EEEeeecCCCcEEEE
Q 019882 240 RETFKGSVHYA-WASVPTYPSGIIGFL 265 (334)
Q Consensus 240 ~~vF~~~v~~~-~~~vPsyp~g~w~f~ 265 (334)
.+.+...+... ...+..|..+.|-+.
T Consensus 238 ~~~~~~~~~~~~~~~v~~~~p~~~~~~ 264 (272)
T 3a27_A 238 AEKNGYKLIDYEVRKIKKYAPGVWHVV 264 (272)
T ss_dssp HHHTTEEEEEEEEEEEEEEETTEEEEE
T ss_pred HHHhCCeeEEeEEEEEEEECCCCCEEE
Confidence 66543222221 234555633444433
No 68
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=95.51 E-value=0.023 Score=51.82 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=45.4
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC--CcCC--------CCHHHHHHHHHhcCCCcEEEEec
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP--AQEL--------VEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp--a~~L--------~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+.+|+.+|++++|+..+++++|+|++|.+=..+. -... +..+.++.+++.|+|||++++..
T Consensus 4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SSSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4578999999999987767899999998532220 0111 34567778899999999998864
No 69
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=95.48 E-value=0.023 Score=52.89 Aligned_cols=65 Identities=23% Similarity=0.354 Sum_probs=44.1
Q ss_pred CCCCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCC----CcCC--------C---CHHHHHHHHHhcCCCcEEEEec
Q 019882 159 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGP----AQEL--------V---EKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gp----a~~L--------~---t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.-.+++++.+|++++|+..++++||+||.|.+= .... ...+ + -.+.++.+++.|+|||.++...
T Consensus 18 ~~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 18 SFGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp ---CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 345789999999999987766789999999752 1100 0000 1 1245678899999999998765
Q ss_pred c
Q 019882 223 E 223 (334)
Q Consensus 223 ~ 223 (334)
+
T Consensus 98 ~ 98 (297)
T 2zig_A 98 G 98 (297)
T ss_dssp C
T ss_pred C
Confidence 4
No 70
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=95.46 E-value=0.036 Score=48.36 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=48.1
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHH
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 241 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~ 241 (334)
+++++.+|+.+.+... ..||+|+++... ..++++.+.+.|+|||.++.....+ +....+.+.+++
T Consensus 105 ~v~~~~~d~~~~~~~~--~~~D~v~~~~~~---------~~~~l~~~~~~LkpgG~lv~~~~~~----~~~~~~~~~l~~ 169 (204)
T 3njr_A 105 RMRAVQGTAPAALADL--PLPEAVFIGGGG---------SQALYDRLWEWLAPGTRIVANAVTL----ESETLLTQLHAR 169 (204)
T ss_dssp TEEEEESCTTGGGTTS--CCCSEEEECSCC---------CHHHHHHHHHHSCTTCEEEEEECSH----HHHHHHHHHHHH
T ss_pred CEEEEeCchhhhcccC--CCCCEEEECCcc---------cHHHHHHHHHhcCCCcEEEEEecCc----ccHHHHHHHHHh
Confidence 8999999999877654 469999987621 2349999999999999999865332 233444555555
Q ss_pred h
Q 019882 242 T 242 (334)
Q Consensus 242 v 242 (334)
.
T Consensus 170 ~ 170 (204)
T 3njr_A 170 H 170 (204)
T ss_dssp H
T ss_pred C
Confidence 4
No 71
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=95.45 E-value=0.024 Score=53.23 Aligned_cols=74 Identities=22% Similarity=0.265 Sum_probs=52.2
Q ss_pred CCCeEEEEchHHHHHhhC--CCCceeEEEECCCCCCCCCcCCCCHHHHHHHHH------hcCCCcEEEEeccchhhhhhH
Q 019882 160 DPRVRLHIGDAVEFLRQV--PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK------ALRPGGVLCNMAESMWLHTHL 231 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~--~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~------~L~~gGilv~q~~sp~~~~~~ 231 (334)
++|++|+..||.++|+.. +..+||+|++|.+ ... ++.|+.+.+ .+.++|+++.|- |......
T Consensus 136 ~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP--Ye~------k~~~~~vl~~L~~~~~r~~~Gi~v~WY--Pi~~~~~ 205 (283)
T 2oo3_A 136 NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS--YER------KEEYKEIPYAIKNAYSKFSTGLYCVWY--PVVNKAW 205 (283)
T ss_dssp TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC--CCS------TTHHHHHHHHHHHHHHHCTTSEEEEEE--EESSHHH
T ss_pred CCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC--CCC------CcHHHHHHHHHHHhCccCCCeEEEEEE--eccchHH
Confidence 579999999999999853 2347999999984 110 123443332 456899999985 5555666
Q ss_pred HHHHHHHHHHhc
Q 019882 232 IEDMISICRETF 243 (334)
Q Consensus 232 ~~~i~~tl~~vF 243 (334)
++.+.+.+++.-
T Consensus 206 ~~~~~~~l~~~~ 217 (283)
T 2oo3_A 206 TEQFLRKMREIS 217 (283)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 788888887653
No 72
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=95.45 E-value=0.022 Score=59.67 Aligned_cols=67 Identities=19% Similarity=0.421 Sum_probs=47.2
Q ss_pred CCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCC-CcCCCC-----HHHHHHHHHhcCCCcEEEEeccc
Q 019882 157 GFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGP-AQELVE-----KPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 157 ~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gp-a~~L~t-----~eFy~~v~~~L~~gGilv~q~~s 224 (334)
++++++++++.+|++++++.. .++||+||+|.+. ..+. ....+. .++++.+.+.|+|||+++..+.+
T Consensus 586 gl~~~~v~~i~~D~~~~l~~~-~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 586 GLTGRAHRLIQADCLAWLREA-NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp TCCSTTEEEEESCHHHHHHHC-CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCCccceEEEecCHHHHHHhc-CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 344579999999999999876 4789999999853 1111 111222 35677888999999999965543
No 73
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=95.45 E-value=0.031 Score=47.62 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=43.6
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCCCcCC----CCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGPAQEL----VEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gpa~~L----~t~eFy~~v~~~L~~gGilv~q 221 (334)
+++++++.+|+..+.... +++||+|+.|..- |.+....+ ...++++.+.+.|+|||.++..
T Consensus 73 ~~~v~~~~~d~~~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~ 138 (197)
T 3eey_A 73 IDRVTLIKDGHQNMDKYI-DCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV 138 (197)
T ss_dssp GGGEEEECSCGGGGGGTC-CSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCeEEEECCHHHHhhhc-cCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEE
Confidence 368999999998776444 4689999998632 22111111 1246999999999999999864
No 74
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=95.40 E-value=0.025 Score=53.62 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=41.5
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccch
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM 225 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp 225 (334)
++++++.+|+.+++ ++||+||+|.+. +..+|++.+.+.|+|||+++...-++
T Consensus 243 ~~v~~~~~D~~~~~-----~~fD~Vi~dpP~--------~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 243 HKIIPILSDVREVD-----VKGNRVIMNLPK--------FAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp TTEEEEESCGGGCC-----CCEEEEEECCTT--------TGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred CcEEEEECChHHhc-----CCCcEEEECCcH--------hHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 58999999999887 479999998631 12379999999999999988754343
No 75
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=95.37 E-value=0.033 Score=51.94 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=57.6
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccc--hhhhhhHHHHHHH
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES--MWLHTHLIEDMIS 237 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~s--p~~~~~~~~~i~~ 237 (334)
+.+++++.+|+++++.+ ..||.||+|.+. .+.+|+..+.+.|++||++....-. ..........+.+
T Consensus 174 ~~~v~~~~~D~~~~~~~---~~~D~Vi~~~p~--------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~ 242 (278)
T 3k6r_A 174 EDRMSAYNMDNRDFPGE---NIADRILMGYVV--------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKR 242 (278)
T ss_dssp TTTEEEECSCTTTCCCC---SCEEEEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHH
T ss_pred CCcEEEEeCcHHHhccc---cCCCEEEECCCC--------cHHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHH
Confidence 46899999999998743 579999998641 2457999999999999998653211 1111122233333
Q ss_pred HHHHhcCCceeE-EEEEeeecCCCcEEEEE
Q 019882 238 ICRETFKGSVHY-AWASVPTYPSGIIGFLI 266 (334)
Q Consensus 238 tl~~vF~~~v~~-~~~~vPsyp~g~w~f~l 266 (334)
..++... .+.. ..-.|-+|..+.|-+++
T Consensus 243 ~~~~~g~-~v~~~~~~~Vk~yaP~~~hvv~ 271 (278)
T 3k6r_A 243 ITKEYGY-DVEKLNELKIKRYAPGVWHVVL 271 (278)
T ss_dssp HHHHTTC-EEEEEEEEEEEEETTTEEEEEE
T ss_pred HHHHcCC-cEEEEEEEEEEeECcCccEEEE
Confidence 3333322 3322 22346677556665443
No 76
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=95.36 E-value=0.017 Score=50.28 Aligned_cols=101 Identities=23% Similarity=0.276 Sum_probs=56.8
Q ss_pred CCeEEEEchHHHH---------HhhCCCCceeEEEECCCCCC-CCC--cCC----CCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 161 PRVRLHIGDAVEF---------LRQVPRGKYDAIIVDSSDPV-GPA--QEL----VEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 161 pRv~viv~Dg~~f---------L~~~~~~~yDvIIvD~~dp~-gpa--~~L----~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
++++++.+|..+. +.....++||+|+.|..... +.. ... .-...++.+.+.|+|||.+++..-.
T Consensus 62 ~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 62 AGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp TTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 5899999997531 21100137999999985322 110 000 0134567788999999999974311
Q ss_pred hhhhhhHHHHHHHHHHHhcCCceeEEEEEeeec--CCCcEEEEEeec
Q 019882 225 MWLHTHLIEDMISICRETFKGSVHYAWASVPTY--PSGIIGFLICST 269 (334)
Q Consensus 225 p~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsy--p~g~w~f~laSk 269 (334)
......+.+.+++.|. .|.. .-|.- +...-.|++|..
T Consensus 142 ----~~~~~~~~~~l~~~F~-~v~~---~kP~asR~~s~E~y~v~~~ 180 (191)
T 3dou_A 142 ----GDMTNDFIAIWRKNFS-SYKI---SKPPASRGSSSEIYIMFFG 180 (191)
T ss_dssp ----STHHHHHHHHHGGGEE-EEEE---ECC------CCEEEEEEEE
T ss_pred ----CCCHHHHHHHHHHhcC-EEEE---ECCCCccCCCceEEEEEee
Confidence 1224566777888887 5543 22321 112335777764
No 77
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=95.36 E-value=0.014 Score=47.85 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=50.4
Q ss_pred CCeEEEEchHHHH-----Hhh-CCCCceeEEEECCCCCCCCCcCC-------CCHHHHHHHHHhcCCCcEEEEeccchhh
Q 019882 161 PRVRLHIGDAVEF-----LRQ-VPRGKYDAIIVDSSDPVGPAQEL-------VEKPFFDTIAKALRPGGVLCNMAESMWL 227 (334)
Q Consensus 161 pRv~viv~Dg~~f-----L~~-~~~~~yDvIIvD~~dp~gpa~~L-------~t~eFy~~v~~~L~~gGilv~q~~sp~~ 227 (334)
++++++.+|..+. +.. .++++||+|+.|..-........ ....+++.+.+.|+|||.++......
T Consensus 62 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~-- 139 (180)
T 1ej0_A 62 VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG-- 139 (180)
T ss_dssp TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS--
T ss_pred CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC--
Confidence 6899999998765 111 22358999999865322111000 01589999999999999998743221
Q ss_pred hhhHHHHHHHHHHHhcC
Q 019882 228 HTHLIEDMISICRETFK 244 (334)
Q Consensus 228 ~~~~~~~i~~tl~~vF~ 244 (334)
.....+.+.+++.|.
T Consensus 140 --~~~~~~~~~~~~~~~ 154 (180)
T 1ej0_A 140 --EGFDEYLREIRSLFT 154 (180)
T ss_dssp --TTHHHHHHHHHHHEE
T ss_pred --CcHHHHHHHHHHhhh
Confidence 123455566666676
No 78
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=95.28 E-value=0.017 Score=54.56 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=63.1
Q ss_pred hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccch
Q 019882 146 VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM 225 (334)
Q Consensus 146 vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp 225 (334)
.|++.+... ++ .+++++.+|+.++ . ++.||+|++++.-+ -..++++.+.+.|+|||++++.....
T Consensus 161 ~Ar~~~~~~--gl--~~v~~v~gDa~~l-~---d~~FDvV~~~a~~~-------d~~~~l~el~r~LkPGG~Lvv~~~~~ 225 (298)
T 3fpf_A 161 LSRKVIEGL--GV--DGVNVITGDETVI-D---GLEFDVLMVAALAE-------PKRRVFRNIHRYVDTETRIIYRTYTG 225 (298)
T ss_dssp HHHHHHHHH--TC--CSEEEEESCGGGG-G---GCCCSEEEECTTCS-------CHHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred HHHHHHHhc--CC--CCeEEEECchhhC-C---CCCcCEEEECCCcc-------CHHHHHHHHHHHcCCCcEEEEEcCcc
Confidence 466666543 34 6999999999885 2 35799999987521 12479999999999999999754322
Q ss_pred hhhhhHHHHHHHHHHHhcCCceeEEEEEeeecCCCcEEEEEeecCCCCCCC
Q 019882 226 WLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDF 276 (334)
Q Consensus 226 ~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsyp~g~w~f~laSk~~~~~~~ 276 (334)
... -++..+.....+.|.. .....|+=. -....++|.|..+|-.+
T Consensus 226 ~r~-~l~~~v~~~~~~gf~~----~~~~~p~~~-v~N~vv~a~k~~~~~~~ 270 (298)
T 3fpf_A 226 MRA-ILYAPVSDDDITGFRR----AGVVLPSGK-VNNTSVLVFKCPDKGEL 270 (298)
T ss_dssp GGG-GSSCCCCTGGGTTEEE----EEEECCCTT-CCCEEEEEEECC-----
T ss_pred hhh-hccccCChhhhhhhhh----eeEECCCCC-cCcEEEEEEccCCchHH
Confidence 110 0000111112335541 223445422 13467888887665543
No 79
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=95.25 E-value=0.012 Score=49.43 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=43.1
Q ss_pred CCCeEEEEchHHHHHhhC--CCCceeEEEECCCCCCCCCcCCCCHHHHHHH--HHhcCCCcEEEEeccc
Q 019882 160 DPRVRLHIGDAVEFLRQV--PRGKYDAIIVDSSDPVGPAQELVEKPFFDTI--AKALRPGGVLCNMAES 224 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~--~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v--~~~L~~gGilv~q~~s 224 (334)
.++++++.+|+.+++... .+++||+|++|.+ .. .-...++++.+ .+.|+|||+++....+
T Consensus 93 ~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~--~~---~~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 93 PEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP--YA---KQEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC--GG---GCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CcceEEEECcHHHHHHHHHhcCCCCCEEEECCC--CC---chhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 368999999999987532 1357999999864 11 11235677777 7889999999976543
No 80
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=95.24 E-value=0.019 Score=55.50 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=48.7
Q ss_pred CeEEEEchHHHHHhhC--CCCceeEEEECCCCCCCCCcCC-----CCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHH
Q 019882 162 RVRLHIGDAVEFLRQV--PRGKYDAIIVDSSDPVGPAQEL-----VEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIED 234 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~--~~~~yDvIIvD~~dp~gpa~~L-----~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~ 234 (334)
+++++.+|+.+++... .+++||+||+|.+.-......+ -..+++..+.+.|+|||+++..+.+.....+.+..
T Consensus 268 ~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 347 (396)
T 2as0_A 268 RMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKD 347 (396)
T ss_dssp GEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHH
T ss_pred cceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHH
Confidence 8999999999987642 1357999999975311101111 12468889999999999988765555444333333
Q ss_pred H
Q 019882 235 M 235 (334)
Q Consensus 235 i 235 (334)
+
T Consensus 348 ~ 348 (396)
T 2as0_A 348 M 348 (396)
T ss_dssp H
T ss_pred H
Confidence 3
No 81
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=95.23 E-value=0.0091 Score=50.12 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=43.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHH--HhcCCCcEEEEeccc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIA--KALRPGGVLCNMAES 224 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~--~~L~~gGilv~q~~s 224 (334)
++++++.+|+.+++... +++||+|++|.+ ... -...++++.+. +.|+|||+++.....
T Consensus 81 ~~~~~~~~d~~~~~~~~-~~~fD~i~~~~~--~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 81 NRFTLLKMEAERAIDCL-TGRFDLVFLDPP--YAK---ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp GGEEEECSCHHHHHHHB-CSCEEEEEECCS--SHH---HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CceEEEECcHHHhHHhh-cCCCCEEEECCC--CCc---chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 58999999999988765 357999999853 110 11256777887 899999999986543
No 82
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=95.22 E-value=0.018 Score=50.43 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=47.5
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCC-------cCC--------CCHHHHHHHHHhcCCCcEEEEeccchh
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPA-------QEL--------VEKPFFDTIAKALRPGGVLCNMAESMW 226 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa-------~~L--------~t~eFy~~v~~~L~~gGilv~q~~sp~ 226 (334)
+++++.+|+..+. ..++++||+|+.+.+=-.... ..+ ...+|++.+.+.|+|||.++....+..
T Consensus 105 ~v~~~~~d~~~~~-~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 183 (230)
T 3evz_A 105 NVRLVKSNGGIIK-GVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE 183 (230)
T ss_dssp CCEEEECSSCSST-TTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH
T ss_pred CcEEEeCCchhhh-hcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH
Confidence 8999999975332 222468999998843100000 001 127899999999999999987543222
Q ss_pred hhhhHHHHHHHHHHHh
Q 019882 227 LHTHLIEDMISICRET 242 (334)
Q Consensus 227 ~~~~~~~~i~~tl~~v 242 (334)
.....+.+.+++.
T Consensus 184 ---~~~~~~~~~l~~~ 196 (230)
T 3evz_A 184 ---KLLNVIKERGIKL 196 (230)
T ss_dssp ---HHHHHHHHHHHHT
T ss_pred ---hHHHHHHHHHHHc
Confidence 2345555666654
No 83
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=95.21 E-value=0.057 Score=48.97 Aligned_cols=79 Identities=18% Similarity=0.367 Sum_probs=50.3
Q ss_pred CCeEEEEchHHHHHhh-----CCCCceeEEEECCCC-CCC----------CC---cCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQ-----VPRGKYDAIIVDSSD-PVG----------PA---QELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~-----~~~~~yDvIIvD~~d-p~g----------pa---~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.|++++.+|..+++.. .++++||+||.+.+= +.. .+ ....-.+|++.+.+.|+|||.++..
T Consensus 90 ~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 90 ARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp GGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 4899999999887541 224689999998421 110 00 0122468999999999999999874
Q ss_pred ccchhhhhhHHHHHHHHHHHhcC
Q 019882 222 AESMWLHTHLIEDMISICRETFK 244 (334)
Q Consensus 222 ~~sp~~~~~~~~~i~~tl~~vF~ 244 (334)
... .....+.+.+++.|.
T Consensus 170 ~~~-----~~~~~~~~~l~~~~~ 187 (260)
T 2ozv_A 170 SRP-----QSVAEIIAACGSRFG 187 (260)
T ss_dssp ECG-----GGHHHHHHHHTTTEE
T ss_pred EcH-----HHHHHHHHHHHhcCC
Confidence 322 123455666665555
No 84
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=95.14 E-value=0.026 Score=49.10 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=42.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHH--hcCCCcEEEEecc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK--ALRPGGVLCNMAE 223 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~--~L~~gGilv~q~~ 223 (334)
++++++.+|+.+++... .++||+|++|.+ ... -...++++.+.+ .|+|||+++....
T Consensus 103 ~~v~~~~~D~~~~~~~~-~~~fD~V~~~~p--~~~---~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 103 GNARVVNSNAMSFLAQK-GTPHNIVFVDPP--FRR---GLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp CSEEEECSCHHHHHSSC-CCCEEEEEECCS--SST---TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CcEEEEECCHHHHHhhc-CCCCCEEEECCC--CCC---CcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 68999999999998654 468999999864 111 122467777766 4999999987553
No 85
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=95.13 E-value=0.025 Score=51.74 Aligned_cols=58 Identities=21% Similarity=0.365 Sum_probs=42.0
Q ss_pred CCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 159 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
..++++++.+|+-+. ..++++||+|++-..=.. +-...|++.+++.|+|||+++....
T Consensus 79 ~~~~v~~~~~~~e~~--~~~~~sfD~v~~~~~~h~-----~~~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 79 RHPRVTYAVAPAEDT--GLPPASVDVAIAAQAMHW-----FDLDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp CCTTEEEEECCTTCC--CCCSSCEEEEEECSCCTT-----CCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcCCceeehhhhhhh--cccCCcccEEEEeeehhH-----hhHHHHHHHHHHHcCCCCEEEEEEC
Confidence 468999999997543 123578999998432111 2235799999999999999987553
No 86
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=95.07 E-value=0.022 Score=55.72 Aligned_cols=53 Identities=28% Similarity=0.437 Sum_probs=43.1
Q ss_pred CC-eEEEEchHHHHHh-hCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PR-VRLHIGDAVEFLR-QVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pR-v~viv~Dg~~fL~-~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+ ++++.+|++++++ .. .++||+|++|.+ +. ..+|.+.+.+.|++||++.+-+
T Consensus 104 ~~~v~v~~~Da~~~l~~~~-~~~fD~V~lDP~---g~-----~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 104 EDRYEIHGMEANFFLRKEW-GFGFDYVDLDPF---GT-----PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp GGGEEEECSCHHHHHHSCC-SSCEEEEEECCS---SC-----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceEEEEeCCHHHHHHHhh-CCCCcEEEECCC---cC-----HHHHHHHHHHHhCCCCEEEEEe
Confidence 35 9999999999998 65 367999999973 11 2579999999999999987633
No 87
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=95.02 E-value=0.014 Score=53.22 Aligned_cols=65 Identities=23% Similarity=0.421 Sum_probs=47.5
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 240 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~ 240 (334)
++++++.+|..+.+. +++||+||+|.++| .++++.+.+.|+|||+++....+. .....+.+.++
T Consensus 164 ~~v~~~~~d~~~~~~---~~~~D~V~~~~~~~---------~~~l~~~~~~L~pgG~l~~~~~~~----~~~~~~~~~l~ 227 (277)
T 1o54_A 164 ERVTIKVRDISEGFD---EKDVDALFLDVPDP---------WNYIDKCWEALKGGGRFATVCPTT----NQVQETLKKLQ 227 (277)
T ss_dssp GGEEEECCCGGGCCS---CCSEEEEEECCSCG---------GGTHHHHHHHEEEEEEEEEEESSH----HHHHHHHHHHH
T ss_pred CCEEEEECCHHHccc---CCccCEEEECCcCH---------HHHHHHHHHHcCCCCEEEEEeCCH----HHHHHHHHHHH
Confidence 589999999887632 35799999987654 358899999999999999855332 12344555555
Q ss_pred H
Q 019882 241 E 241 (334)
Q Consensus 241 ~ 241 (334)
+
T Consensus 228 ~ 228 (277)
T 1o54_A 228 E 228 (277)
T ss_dssp H
T ss_pred H
Confidence 5
No 88
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=94.94 E-value=0.034 Score=49.05 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=43.6
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCC---CHHHHHHHHHhcCCCcEEEEeccc
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELV---EKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~---t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
++++.+|+.+++...++++||+|+.-.. ..++- -..+++.+++.|+|||+++.+..+
T Consensus 83 ~~~~~~d~~~~~~~~~~~~fD~i~~~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 142 (240)
T 3dli_A 83 FNVVKSDAIEYLKSLPDKYLDGVMISHF-----VEHLDPERLFELLSLCYSKMKYSSYIVIESPN 142 (240)
T ss_dssp SEEECSCHHHHHHTSCTTCBSEEEEESC-----GGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred cceeeccHHHHhhhcCCCCeeEEEECCc-----hhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 8999999999986655678999998432 11221 157999999999999999976543
No 89
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=94.83 E-value=0.086 Score=47.68 Aligned_cols=97 Identities=12% Similarity=0.070 Sum_probs=60.0
Q ss_pred CeEEEEchHHHHHhh-CCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHH
Q 019882 162 RVRLHIGDAVEFLRQ-VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 240 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~-~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~ 240 (334)
+++++.+|+.++... ...++||+|+..+..+ -..+++.+.+.|+|||.++...+... .+.+..+.+.++
T Consensus 131 ~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~~~--------~~~ll~~~~~~LkpgG~l~~~~g~~~--~~e~~~~~~~l~ 200 (249)
T 3g89_A 131 GARALWGRAEVLAREAGHREAYARAVARAVAP--------LCVLSELLLPFLEVGGAAVAMKGPRV--EEELAPLPPALE 200 (249)
T ss_dssp SEEEEECCHHHHTTSTTTTTCEEEEEEESSCC--------HHHHHHHHGGGEEEEEEEEEEECSCC--HHHHTTHHHHHH
T ss_pred ceEEEECcHHHhhcccccCCCceEEEECCcCC--------HHHHHHHHHHHcCCCeEEEEEeCCCc--HHHHHHHHHHHH
Confidence 599999999887642 1136899999976422 15799999999999999987654322 122334444444
Q ss_pred Hh-cCCceeEEEEEeeecCCCcEEEEEeecC
Q 019882 241 ET-FKGSVHYAWASVPTYPSGIIGFLICSTE 270 (334)
Q Consensus 241 ~v-F~~~v~~~~~~vPsyp~g~w~f~laSk~ 270 (334)
.. |. ........+|... +....++..|.
T Consensus 201 ~~G~~-~~~~~~~~~p~~~-~~R~l~~~~k~ 229 (249)
T 3g89_A 201 RLGGR-LGEVLALQLPLSG-EARHLVVLEKT 229 (249)
T ss_dssp HHTEE-EEEEEEEECTTTC-CEEEEEEEEEC
T ss_pred HcCCe-EEEEEEeeCCCCC-CcEEEEEEEeC
Confidence 43 44 3344334455432 34455555554
No 90
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=94.66 E-value=0.012 Score=56.38 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=44.6
Q ss_pred hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCc
Q 019882 146 VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGG 216 (334)
Q Consensus 146 vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gG 216 (334)
+|++.++.. +++ +++++.+|+.+++....+++||+||+|.+ .+.. . -.+|++.+.+.|+|||
T Consensus 210 ~a~~~~~~~--g~~--~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p--~~~~-~--~~~~l~~~~~~LkpgG 271 (373)
T 2qm3_A 210 FIEKAANEI--GYE--DIEIFTFDLRKPLPDYALHKFDTFITDPP--ETLE-A--IRAFVGRGIATLKGPR 271 (373)
T ss_dssp HHHHHHHHH--TCC--CEEEECCCTTSCCCTTTSSCBSEEEECCC--SSHH-H--HHHHHHHHHHTBCSTT
T ss_pred HHHHHHHHc--CCC--CEEEEEChhhhhchhhccCCccEEEECCC--CchH-H--HHHHHHHHHHHcccCC
Confidence 466666543 232 89999999988664311357999999973 3322 2 2789999999999999
No 91
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=94.63 E-value=0.024 Score=51.16 Aligned_cols=67 Identities=22% Similarity=0.401 Sum_probs=48.6
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHH
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISIC 239 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl 239 (334)
.++++++.+|+.+.. .+++.||+||+|..+|. ++++.+.+.|+|||.++....+. ..+..+...+
T Consensus 152 ~~~v~~~~~d~~~~~--~~~~~~D~v~~~~~~~~---------~~l~~~~~~L~pgG~l~~~~~~~----~~~~~~~~~l 216 (280)
T 1i9g_A 152 PDNWRLVVSDLADSE--LPDGSVDRAVLDMLAPW---------EVLDAVSRLLVAGGVLMVYVATV----TQLSRIVEAL 216 (280)
T ss_dssp CTTEEEECSCGGGCC--CCTTCEEEEEEESSCGG---------GGHHHHHHHEEEEEEEEEEESSH----HHHHHHHHHH
T ss_pred CCcEEEEECchHhcC--CCCCceeEEEECCcCHH---------HHHHHHHHhCCCCCEEEEEeCCH----HHHHHHHHHH
Confidence 368999999987652 12457999999876553 58999999999999999855332 2344555666
Q ss_pred HH
Q 019882 240 RE 241 (334)
Q Consensus 240 ~~ 241 (334)
++
T Consensus 217 ~~ 218 (280)
T 1i9g_A 217 RA 218 (280)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 92
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=94.54 E-value=0.1 Score=43.77 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=37.3
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECC-CCCCCCCcCC----CCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDS-SDPVGPAQEL----VEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~-~dp~gpa~~L----~t~eFy~~v~~~L~~gGilv~q 221 (334)
++++++.+|..... ...+++||+|+.+. +-|.+..... -...+++.+.+.|+|||.++..
T Consensus 70 ~~v~~~~~~~~~l~-~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 134 (185)
T 3mti_A 70 ENTELILDGHENLD-HYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM 134 (185)
T ss_dssp CCEEEEESCGGGGG-GTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcEEEEeCcHHHHH-hhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence 68999997765532 22246899999884 2222111111 1236789999999999999864
No 93
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=94.50 E-value=0.02 Score=52.22 Aligned_cols=69 Identities=25% Similarity=0.360 Sum_probs=48.5
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHH
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISIC 239 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl 239 (334)
.++++++.+|+.+++. +++||+||+|.+++ .++++.+.+.|+|||+++....+. .....+.+.+
T Consensus 161 ~~~v~~~~~d~~~~~~---~~~fD~Vi~~~~~~---------~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~~~~l 224 (275)
T 1yb2_A 161 IGNVRTSRSDIADFIS---DQMYDAVIADIPDP---------WNHVQKIASMMKPGSVATFYLPNF----DQSEKTVLSL 224 (275)
T ss_dssp CTTEEEECSCTTTCCC---SCCEEEEEECCSCG---------GGSHHHHHHTEEEEEEEEEEESSH----HHHHHHHHHS
T ss_pred CCcEEEEECchhccCc---CCCccEEEEcCcCH---------HHHHHHHHHHcCCCCEEEEEeCCH----HHHHHHHHHH
Confidence 3689999999887432 35799999987654 258999999999999999755332 1234444555
Q ss_pred HHh-cC
Q 019882 240 RET-FK 244 (334)
Q Consensus 240 ~~v-F~ 244 (334)
.+. |.
T Consensus 225 ~~~Gf~ 230 (275)
T 1yb2_A 225 SASGMH 230 (275)
T ss_dssp GGGTEE
T ss_pred HHCCCe
Confidence 443 54
No 94
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=94.49 E-value=0.022 Score=46.88 Aligned_cols=56 Identities=11% Similarity=0.173 Sum_probs=41.8
Q ss_pred CeEEEEchHHHHHhhCC--CCceeEEEECCCCCCCCCcCCCCHHHHHHHH--HhcCCCcEEEEecc
Q 019882 162 RVRLHIGDAVEFLRQVP--RGKYDAIIVDSSDPVGPAQELVEKPFFDTIA--KALRPGGVLCNMAE 223 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~--~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~--~~L~~gGilv~q~~ 223 (334)
+++++.+|+.+++.... .++||+|++|.+-. -...++++.+. +.|+|||+++....
T Consensus 89 ~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~------~~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 89 GARVVALPVEVFLPEAKAQGERFTVAFMAPPYA------MDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT------SCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred ceEEEeccHHHHHHhhhccCCceEEEEECCCCc------hhHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 89999999998765431 24799999986421 12346788888 99999999997553
No 95
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=94.40 E-value=0.047 Score=50.47 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=58.4
Q ss_pred CCCeEEEEchHHHHHhh----CCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec-cchhhhhhHHHH
Q 019882 160 DPRVRLHIGDAVEFLRQ----VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA-ESMWLHTHLIED 234 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~----~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~-~sp~~~~~~~~~ 234 (334)
+++++++.||+.+-|.+ .+..++|+|.+|+- .+ --+.+.|+.+..+|+|||+++.-- .++. ...
T Consensus 157 ~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D--~Y----~~t~~~le~~~p~l~~GGvIv~DD~~~~~-----w~G 225 (257)
T 3tos_A 157 TQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD--LY----EPTKAVLEAIRPYLTKGSIVAFDELDNPK-----WPG 225 (257)
T ss_dssp CCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC--CH----HHHHHHHHHHGGGEEEEEEEEESSTTCTT-----CTH
T ss_pred CCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc--cc----chHHHHHHHHHHHhCCCcEEEEcCCCCCC-----ChH
Confidence 58999999999887754 44457999999993 11 125678999999999999999732 1111 123
Q ss_pred HHHHHHHhcCCceeEEEEEeeecCCC
Q 019882 235 MISICRETFKGSVHYAWASVPTYPSG 260 (334)
Q Consensus 235 i~~tl~~vF~~~v~~~~~~vPsyp~g 260 (334)
+.+.+.+.+... ..-....|++|..
T Consensus 226 ~~~A~~ef~~~~-~~~i~~~p~~~~~ 250 (257)
T 3tos_A 226 ENIAMRKVLGLD-HAPLRLLPGRPAP 250 (257)
T ss_dssp HHHHHHHHTCTT-SSCCEECTTCSCC
T ss_pred HHHHHHHHHhhC-CCeEEEccCCCCC
Confidence 445555555421 2222456777653
No 96
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=94.34 E-value=0.092 Score=47.95 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=44.5
Q ss_pred CCeEEEEchHHHHHhhC--CCCceeEEEECCCCC-CCCCc-------------CCCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 161 PRVRLHIGDAVEFLRQV--PRGKYDAIIVDSSDP-VGPAQ-------------ELVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~--~~~~yDvIIvD~~dp-~gpa~-------------~L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
++++++.+|+.++.... ..++||+|++|.+-. .+... .-...++++.+.+.|+|||.++..+.+
T Consensus 134 ~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 134 LNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp CSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CcEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 48999999999876531 135799999996531 12110 012378999999999999999875544
Q ss_pred h
Q 019882 225 M 225 (334)
Q Consensus 225 p 225 (334)
.
T Consensus 214 ~ 214 (274)
T 3ajd_A 214 M 214 (274)
T ss_dssp C
T ss_pred C
Confidence 3
No 97
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=94.27 E-value=0.05 Score=49.88 Aligned_cols=58 Identities=21% Similarity=0.171 Sum_probs=40.8
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCC-----CCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS-----DPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~-----dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
..+++++.+|..++ +++||+|+.... ||......-.-..+++.+++.|+|||+++.+.
T Consensus 121 ~~~v~~~~~d~~~~-----~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 121 PRRKEVRIQGWEEF-----DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp SSCEEEEECCGGGC-----CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred CCceEEEECCHHHc-----CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 35899999998775 368999997532 22100011122589999999999999999755
No 98
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=94.22 E-value=0.058 Score=52.28 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=41.5
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++++.+|+.+++... .++||+|++|.+ +. ..+|++.+.+.|++||+++.-
T Consensus 114 i~v~~~Da~~~~~~~-~~~fD~I~lDP~---~~-----~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 114 IVINHDDANRLMAER-HRYFHFIDLDPF---GS-----PMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp EEEEESCHHHHHHHS-TTCEEEEEECCS---SC-----CHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEcCcHHHHHHhc-cCCCCEEEeCCC---CC-----HHHHHHHHHHhcCCCCEEEEE
Confidence 999999999999876 357999999864 21 268999999999999998753
No 99
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=94.16 E-value=0.12 Score=44.69 Aligned_cols=55 Identities=11% Similarity=0.297 Sum_probs=39.7
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCH----HHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEK----PFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~----eFy~~v~~~L~~gGilv~q 221 (334)
..+++++.+|+...- .++++||+|++... ..++-.. .+++.+++.|+|||.++..
T Consensus 82 ~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~-----l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (235)
T 3sm3_A 82 GGKAEFKVENASSLS--FHDSSFDFAVMQAF-----LTSVPDPKERSRIIKEVFRVLKPGAYLYLV 140 (235)
T ss_dssp SCEEEEEECCTTSCC--SCTTCEEEEEEESC-----GGGCCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcceEEEEecccccC--CCCCceeEEEEcch-----hhcCCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 358999999986532 22468999998632 1223222 6999999999999999864
No 100
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=94.11 E-value=0.059 Score=50.59 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=50.5
Q ss_pred CCCeEEEEc-hHHHHHhhCCCCceeEEEECCCCCCCCC--cCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHH
Q 019882 160 DPRVRLHIG-DAVEFLRQVPRGKYDAIIVDSSDPVGPA--QELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMI 236 (334)
Q Consensus 160 dpRv~viv~-Dg~~fL~~~~~~~yDvIIvD~~dp~gpa--~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~ 236 (334)
.++++++.+ |.... +.++||+|+.|..-..+.. .+.-+...++.+.+.|+|||.+++..-.+.. .....++
T Consensus 130 ~~~v~~~~~~D~~~l----~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~--~~~~~~l 203 (305)
T 2p41_A 130 WNLVRLQSGVDVFFI----PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYM--SSVIEKM 203 (305)
T ss_dssp GGGEEEECSCCTTTS----CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCS--HHHHHHH
T ss_pred CCCeEEEeccccccC----CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCC--chHHHHH
Confidence 367899988 87643 2358999999975321110 0000114678888999999999985533321 2335666
Q ss_pred HHHHHhcC
Q 019882 237 SICRETFK 244 (334)
Q Consensus 237 ~tl~~vF~ 244 (334)
..++..|.
T Consensus 204 ~~l~~~f~ 211 (305)
T 2p41_A 204 EALQRKHG 211 (305)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHcC
Confidence 77778888
No 101
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=94.01 E-value=0.081 Score=45.76 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=37.6
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCC---HHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE---KPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t---~eFy~~v~~~L~~gGilv~q 221 (334)
++++++.+|.. .+... .++||+|+.... ..++-. ..+++.+++.|+|||+++..
T Consensus 84 ~~v~~~~~d~~-~~~~~-~~~fD~V~~~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 84 KRISLFQSSLV-YRDKR-FSGYDAATVIEV-----IEHLDENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp TTEEEEECCSS-SCCGG-GTTCSEEEEESC-----GGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred cceEEEeCccc-ccccc-cCCCCEEEEHHH-----HHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 48999999973 22222 358999996432 223322 47999999999999988853
No 102
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=93.94 E-value=0.12 Score=45.37 Aligned_cols=54 Identities=17% Similarity=0.051 Sum_probs=38.0
Q ss_pred CCeEEEEchHHHHHh--hCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLR--QVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~--~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
+++..+.+|+..... .. .++||+|++|..++. -...+++.+++.|+|||.++..
T Consensus 105 ~~v~~~~~d~~~~~~~~~~-~~~fD~V~~~~~~~~------~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 105 NNIIPLLFDASKPWKYSGI-VEKVDLIYQDIAQKN------QIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp SSEEEECSCTTCGGGTTTT-CCCEEEEEECCCSTT------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeEEEEcCCCCchhhccc-ccceeEEEEeccChh------HHHHHHHHHHHHhCCCCEEEEE
Confidence 468888888865311 12 257999999964431 1234689999999999999864
No 103
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=93.77 E-value=0.048 Score=46.70 Aligned_cols=52 Identities=10% Similarity=0.085 Sum_probs=40.0
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
++++++.+|+.++. +.++||+|+.....+ -..+++.+++.|+|||+++...+
T Consensus 115 ~~v~~~~~d~~~~~---~~~~~D~i~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 115 ENIEPVQSRVEEFP---SEPPFDGVISRAFAS--------LNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp SSEEEEECCTTTSC---CCSCEEEEECSCSSS--------HHHHHHHHTTSEEEEEEEEEEES
T ss_pred CCeEEEecchhhCC---ccCCcCEEEEeccCC--------HHHHHHHHHHhcCCCcEEEEEeC
Confidence 34999999987754 235799999865321 25799999999999999998654
No 104
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=93.76 E-value=0.039 Score=47.02 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=37.5
Q ss_pred CCceeEEEECCCCCCC-CC-cCCC-----CHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcC
Q 019882 179 RGKYDAIIVDSSDPVG-PA-QELV-----EKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 244 (334)
Q Consensus 179 ~~~yDvIIvD~~dp~g-pa-~~L~-----t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~ 244 (334)
+++||+|+.|..-... .. .... ....++.+.+.|+|||.++..... ......+...++..|.
T Consensus 104 ~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~l~~~l~~~f~ 172 (201)
T 2plw_A 104 DKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL----GSQTNNLKTYLKGMFQ 172 (201)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC----STTHHHHHHHHHTTEE
T ss_pred CCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC----CCCHHHHHHHHHHHHh
Confidence 3579999998753221 10 0000 123677899999999999974321 1223456666777776
No 105
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=93.76 E-value=0.029 Score=49.52 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=40.3
Q ss_pred CCeEEEEchHHHHH--hhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFL--RQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL--~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++++++.+|+.+.. ... +++||+|++|...|.. ...+++.+.+.|+|||+++..
T Consensus 126 ~~v~~~~~d~~~~~~~~~~-~~~~D~V~~~~~~~~~------~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 126 TNIIPVIEDARHPHKYRML-IAMVDVIFADVAQPDQ------TRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp TTEEEECSCTTCGGGGGGG-CCCEEEEEECCCCTTH------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeEEEEcccCChhhhccc-CCcEEEEEEcCCCccH------HHHHHHHHHHHcCCCeEEEEE
Confidence 78999999987742 222 4689999998763221 144688899999999999873
No 106
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=93.64 E-value=0.093 Score=52.23 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=44.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCCCcC-----------------CCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGPAQE-----------------LVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gpa~~-----------------L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.++.++.+|+..+.... +++||+|++|++- ..|.-.+ -..+++++.+.+.|+|||+++..+
T Consensus 156 ~nv~v~~~Da~~l~~~~-~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 234 (456)
T 3m4x_A 156 SNAIVTNHAPAELVPHF-SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234 (456)
T ss_dssp SSEEEECCCHHHHHHHH-TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CceEEEeCCHHHhhhhc-cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 36999999999987544 3689999999862 1221000 022378899999999999998644
Q ss_pred cc
Q 019882 223 ES 224 (334)
Q Consensus 223 ~s 224 (334)
.+
T Consensus 235 Cs 236 (456)
T 3m4x_A 235 CT 236 (456)
T ss_dssp SC
T ss_pred ee
Confidence 33
No 107
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=93.61 E-value=0.2 Score=42.82 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=41.3
Q ss_pred CCeEEEEchHHHHHhh--CCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 161 PRVRLHIGDAVEFLRQ--VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~--~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
++++++..|....... ..+.+||+|+....-. .---..+++.+++.|+|||+++....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-----~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 94 GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-----HQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-----SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccccchhhHHhhcccccccCCCccEEEECchhh-----hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 5778889998887332 2234699999864321 11235799999999999999997553
No 108
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=93.59 E-value=0.039 Score=46.79 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=47.2
Q ss_pred CCeEEE-EchHHHH-----Hh-hCCCCceeEEEECCCCCCCCCcCCCC--------HHHHHHHHHhcCCCcEEEEeccch
Q 019882 161 PRVRLH-IGDAVEF-----LR-QVPRGKYDAIIVDSSDPVGPAQELVE--------KPFFDTIAKALRPGGVLCNMAESM 225 (334)
Q Consensus 161 pRv~vi-v~Dg~~f-----L~-~~~~~~yDvIIvD~~dp~gpa~~L~t--------~eFy~~v~~~L~~gGilv~q~~sp 225 (334)
++++++ .+|.... +. ..++++||+|+.|..-... ...... ..+++.+.+.|+|||.++......
T Consensus 70 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 70 EGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNAT-GFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp TTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCC-SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred CCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCC-CCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 567888 7775432 11 1223479999998642111 001111 368889999999999999743221
Q ss_pred hhhhhHHHHHHHHHHHhcC
Q 019882 226 WLHTHLIEDMISICRETFK 244 (334)
Q Consensus 226 ~~~~~~~~~i~~tl~~vF~ 244 (334)
.....+...++..|.
T Consensus 149 ----~~~~~~~~~l~~~f~ 163 (196)
T 2nyu_A 149 ----SQSRRLQRRLTEEFQ 163 (196)
T ss_dssp ----GGGHHHHHHHHHHEE
T ss_pred ----ccHHHHHHHHHHHhc
Confidence 123455666677776
No 109
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=93.56 E-value=0.11 Score=48.61 Aligned_cols=62 Identities=19% Similarity=0.312 Sum_probs=43.1
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCC----CcC--CC-----------CHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGP----AQE--LV-----------EKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gp----a~~--L~-----------t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+..+.. . .++||+|++|++- ..|. +.. .. ..++++.+.+.|+|||.++..+
T Consensus 169 ~~v~~~~~D~~~~~~-~-~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st 246 (315)
T 1ixk_A 169 LNVILFHSSSLHIGE-L-NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST 246 (315)
T ss_dssp CSEEEESSCGGGGGG-G-CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeEEEEECChhhccc-c-cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 479999999988754 2 3579999999752 1221 100 11 1589999999999999998754
Q ss_pred cc
Q 019882 223 ES 224 (334)
Q Consensus 223 ~s 224 (334)
.+
T Consensus 247 cs 248 (315)
T 1ixk_A 247 CS 248 (315)
T ss_dssp SC
T ss_pred CC
Confidence 33
No 110
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=93.46 E-value=0.097 Score=44.95 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=57.0
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCC---CHHHHHHHHHhcCCCcEEEEeccchh----------hh
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELV---EKPFFDTIAKALRPGGVLCNMAESMW----------LH 228 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~---t~eFy~~v~~~L~~gGilv~q~~sp~----------~~ 228 (334)
+++++.+|....- .+++||+|+.... ..++- -..+++.+++.|+|||+++....... ..
T Consensus 86 ~~~~~~~d~~~~~---~~~~fD~v~~~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 157 (211)
T 3e23_A 86 GRPVRTMLFHQLD---AIDAYDAVWAHAC-----LLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYN 157 (211)
T ss_dssp TSCCEECCGGGCC---CCSCEEEEEECSC-----GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEEC
T ss_pred CCceEEeeeccCC---CCCcEEEEEecCc-----hhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhcc
Confidence 4566777765533 2568999998542 11221 24689999999999999986432111 00
Q ss_pred hhHHHHHHHHHHHh--cCCceeEEEEEeeecCCC--cEEEEEeec
Q 019882 229 THLIEDMISICRET--FKGSVHYAWASVPTYPSG--IIGFLICST 269 (334)
Q Consensus 229 ~~~~~~i~~tl~~v--F~~~v~~~~~~vPsyp~g--~w~f~laSk 269 (334)
.-....+.+.+.+. |. .+.........|... .|-+++..+
T Consensus 158 ~~~~~~~~~~l~~aG~f~-~~~~~~~~~~~~~~~~~~wl~~~~~~ 201 (211)
T 3e23_A 158 YPSEEWLRARYAEAGTWA-SVAVESSEGKGFDQELAQFLHVSVRK 201 (211)
T ss_dssp CCCHHHHHHHHHHHCCCS-EEEEEEEEEECTTSCEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHhCCCcE-EEEEEeccCCCCCCCCceEEEEEEec
Confidence 01234555555554 77 666554444555432 355555444
No 111
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=93.44 E-value=0.15 Score=44.11 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=37.6
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCC---HHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE---KPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t---~eFy~~v~~~L~~gGilv~q 221 (334)
++++++.+|.. .+... .++||+|+.... ..++-. ..+++.+++.|+|||+++..
T Consensus 84 ~~v~~~~~d~~-~~~~~-~~~fD~v~~~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~li~~ 140 (217)
T 3jwh_A 84 ERLQLIQGALT-YQDKR-FHGYDAATVIEV-----IEHLDLSRLGAFERVLFEFAQPKIVIVTT 140 (217)
T ss_dssp TTEEEEECCTT-SCCGG-GCSCSEEEEESC-----GGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred cceEEEeCCcc-ccccc-CCCcCEEeeHHH-----HHcCCHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 48999999963 22222 358999996432 122211 47899999999999988863
No 112
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=93.41 E-value=0.078 Score=45.66 Aligned_cols=77 Identities=25% Similarity=0.352 Sum_probs=51.3
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCC----HHHHHHHHHhcCCCcEEEEeccc-----hhhhhh
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE----KPFFDTIAKALRPGGVLCNMAES-----MWLHTH 230 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t----~eFy~~v~~~L~~gGilv~q~~s-----p~~~~~ 230 (334)
.++++++.+|+.++. .+++||+|+.... ..++-. ..+++.+++.|+|||+++..... .|....
T Consensus 96 ~~~~~~~~~d~~~~~---~~~~fD~v~~~~~-----l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~ 167 (216)
T 3ofk_A 96 WSHISWAATDILQFS---TAELFDLIVVAEV-----LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVA 167 (216)
T ss_dssp CSSEEEEECCTTTCC---CSCCEEEEEEESC-----GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCSC
T ss_pred CCCeEEEEcchhhCC---CCCCccEEEEccH-----HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhhh
Confidence 358999999987765 2468999998532 223333 36799999999999999974321 122223
Q ss_pred HHHHHHHHHHHhcC
Q 019882 231 LIEDMISICRETFK 244 (334)
Q Consensus 231 ~~~~i~~tl~~vF~ 244 (334)
....+.+.+.+.|.
T Consensus 168 ~~~~~~~~~~~~~~ 181 (216)
T 3ofk_A 168 GAETVITILTEALT 181 (216)
T ss_dssp CHHHHHHHHHHHSE
T ss_pred hHHHHHHHHHhhcc
Confidence 34455566666666
No 113
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=93.34 E-value=0.05 Score=49.25 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=42.8
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
++++++.+|+.+..... +++||+|++...-..-+ -...+++.+++.|+|||+++....
T Consensus 117 ~~v~~~~~d~~~~~~~~-~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 117 DNMQFIHCAAQDVASHL-ETPVDLILFHAVLEWVA----DPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp GGEEEEESCGGGTGGGC-SSCEEEEEEESCGGGCS----CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cceEEEEcCHHHhhhhc-CCCceEEEECchhhccc----CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 79999999998876333 46899999864311111 115799999999999999997553
No 114
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=93.33 E-value=0.29 Score=40.27 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=38.1
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.++++++.+| +. .++++||+|+....-..-+ -...+++.+++.|+|||.++..
T Consensus 59 ~~~v~~~~~d----~~-~~~~~~D~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~~~ 111 (170)
T 3i9f_A 59 FDSVITLSDP----KE-IPDNSVDFILFANSFHDMD----DKQHVISEVKRILKDDGRVIII 111 (170)
T ss_dssp CTTSEEESSG----GG-SCTTCEEEEEEESCSTTCS----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcEEEeCC----CC-CCCCceEEEEEccchhccc----CHHHHHHHHHHhcCCCCEEEEE
Confidence 3689999999 33 3356899999754321111 1257999999999999999863
No 115
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=93.30 E-value=0.055 Score=46.51 Aligned_cols=52 Identities=29% Similarity=0.415 Sum_probs=39.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
++++++.+|+.+.+.. +++||+|+++..-+.-+ +.+.+.|+|||.++.....
T Consensus 125 ~~v~~~~~d~~~~~~~--~~~~D~i~~~~~~~~~~----------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 125 HNVSTRHGDGWQGWQA--RAPFDAIIVTAAPPEIP----------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CSEEEEESCGGGCCGG--GCCEEEEEESSBCSSCC----------THHHHTEEEEEEEEEEECS
T ss_pred CceEEEECCcccCCcc--CCCccEEEEccchhhhh----------HHHHHhcccCcEEEEEEcC
Confidence 4799999999886654 35799999986543222 2688999999999985543
No 116
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=93.23 E-value=0.02 Score=56.53 Aligned_cols=57 Identities=30% Similarity=0.521 Sum_probs=41.0
Q ss_pred CCCCeEEEEchHHH--HHhhC--CCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 159 EDPRVRLHIGDAVE--FLRQV--PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 159 ~dpRv~viv~Dg~~--fL~~~--~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
..++++++.+|+.+ |+... .+++||+||.|..-- .. -...+|+.+++.|+|||+++.
T Consensus 262 ~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgsH~--~~---d~~~aL~el~rvLKPGGvlVi 322 (419)
T 3sso_A 262 DELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGSHI--NA---HVRTSFAALFPHVRPGGLYVI 322 (419)
T ss_dssp CBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSCCC--HH---HHHHHHHHHGGGEEEEEEEEE
T ss_pred cCCCcEEEEecccccchhhhhhcccCCccEEEECCccc--ch---hHHHHHHHHHHhcCCCeEEEE
Confidence 45899999999854 54211 025799999986421 10 125689999999999999987
No 117
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=93.23 E-value=0.063 Score=47.37 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=59.5
Q ss_pred hHHhhCcccccCCCCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccch
Q 019882 146 VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM 225 (334)
Q Consensus 146 vak~~fp~l~~~~~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp 225 (334)
.+++.++.. ...+++++.+|+..+.. ++++||+||++..-..-+... -..+++.+++.|+|||+++......
T Consensus 117 ~a~~~~~~~----~~~~~~~~~~d~~~~~~--~~~~fD~v~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~ 188 (241)
T 2ex4_A 117 QAKTYLGEE----GKRVRNYFCCGLQDFTP--EPDSYDVIWIQWVIGHLTDQH--LAEFLRRCKGSLRPNGIIVIKDNMA 188 (241)
T ss_dssp HHHHHTGGG----GGGEEEEEECCGGGCCC--CSSCEEEEEEESCGGGSCHHH--HHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred HHHHHhhhc----CCceEEEEEcChhhcCC--CCCCEEEEEEcchhhhCCHHH--HHHHHHHHHHhcCCCeEEEEEEccC
Confidence 355555432 13578999999765432 235799999875311111000 1379999999999999998732111
Q ss_pred h----------hhhhHHHHHHHHHHHh-cCCceeEEEEEeeecCCCc
Q 019882 226 W----------LHTHLIEDMISICRET-FKGSVHYAWASVPTYPSGI 261 (334)
Q Consensus 226 ~----------~~~~~~~~i~~tl~~v-F~~~v~~~~~~vPsyp~g~ 261 (334)
. ........+.+.+.+. |. .+.. ...+.||.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~-~~~~--~~~~~~~~~~ 232 (241)
T 2ex4_A 189 QEGVILDDVDSSVCRDLDVVRRIICSAGLS-LLAE--ERQENLPDEI 232 (241)
T ss_dssp SSSEEEETTTTEEEEBHHHHHHHHHHTTCC-EEEE--EECCSCCTTS
T ss_pred CCcceecccCCcccCCHHHHHHHHHHcCCe-EEEe--eecCCCcchh
Confidence 0 0001244555666655 76 4433 3445666543
No 118
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=93.13 E-value=0.047 Score=46.77 Aligned_cols=54 Identities=20% Similarity=0.481 Sum_probs=41.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCC---HHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE---KPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t---~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+..+ .++++||+|+.... ..++-. ..+++.+++.|+|||+++...
T Consensus 90 ~~~~~~~~d~~~~---~~~~~~D~v~~~~~-----l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 146 (218)
T 3ou2_A 90 DNVEFRQQDLFDW---TPDRQWDAVFFAHW-----LAHVPDDRFEAFWESVRSAVAPGGVVEFVD 146 (218)
T ss_dssp TTEEEEECCTTSC---CCSSCEEEEEEESC-----GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeEEEecccccC---CCCCceeEEEEech-----hhcCCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6899999998776 23468999998542 122222 579999999999999998754
No 119
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=92.92 E-value=0.2 Score=42.99 Aligned_cols=97 Identities=8% Similarity=-0.057 Sum_probs=57.1
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccc--------hhhhhhHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES--------MWLHTHLI 232 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~s--------p~~~~~~~ 232 (334)
++++++.+|+...- .++++||+|+....-..-+ -...+++.+++.|+|||.++...-. +....-..
T Consensus 88 ~~~~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 161 (219)
T 3dh0_A 88 KNVEVLKSEENKIP--LPDNTVDFIFMAFTFHELS----EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSE 161 (219)
T ss_dssp TTEEEEECBTTBCS--SCSSCEEEEEEESCGGGCS----SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCH
T ss_pred CcEEEEecccccCC--CCCCCeeEEEeehhhhhcC----CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCH
Confidence 48999999986542 2346899999864311111 1267999999999999999864211 11111123
Q ss_pred HHHHHHHHHh-cCCceeEEEEEeeecCCCcEEEEEeecC
Q 019882 233 EDMISICRET-FKGSVHYAWASVPTYPSGIIGFLICSTE 270 (334)
Q Consensus 233 ~~i~~tl~~v-F~~~v~~~~~~vPsyp~g~w~f~laSk~ 270 (334)
..+.+.+++. |. .+.. -.++ +.+-++++.|.
T Consensus 162 ~~~~~~l~~~Gf~-~~~~-----~~~~-~~~~~~~~~k~ 193 (219)
T 3dh0_A 162 WEVGLILEDAGIR-VGRV-----VEVG-KYCFGVYAMIV 193 (219)
T ss_dssp HHHHHHHHHTTCE-EEEE-----EEET-TTEEEEEEECC
T ss_pred HHHHHHHHHCCCE-EEEE-----EeeC-CceEEEEEEec
Confidence 4555556655 66 4433 1222 34556667664
No 120
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=92.91 E-value=0.14 Score=51.07 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=44.0
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCCC-CCCC----CcCC-------------CCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGP----AQEL-------------VEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gp----a~~L-------------~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
++++.+|+.++.... .++||+|++|++- ..|. +... ..+++++.+.+.|+|||+++..+.+
T Consensus 153 v~~~~~Da~~l~~~~-~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 153 LAVTQAPPRALAEAF-GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CEEECSCHHHHHHHH-CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred EEEEECCHHHhhhhc-cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 999999999987533 3689999999864 1221 1111 1278899999999999999964433
No 121
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=92.90 E-value=0.27 Score=47.41 Aligned_cols=82 Identities=16% Similarity=0.221 Sum_probs=53.4
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCC---C---C-CcC-------------CCCHHHHHHHHHhcCCCcEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV---G---P-AQE-------------LVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~---g---p-a~~-------------L~t~eFy~~v~~~L~~gGilv 219 (334)
..++++...||+.+-... .+.||.|++|++--. + . +.. -...+..+...+.|+|||++|
T Consensus 203 ~~~v~v~~~D~~~~~~~~-~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LV 281 (359)
T 4fzv_A 203 GNQVRVTSWDGRKWGELE-GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVV 281 (359)
T ss_dssp SSSEEEECCCGGGHHHHS-TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCceEEEeCchhhcchhc-cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 358999999999987655 468999999987421 1 0 110 123456677788999999999
Q ss_pred Eeccchh--hhhhHHHHHHHHHHHh
Q 019882 220 NMAESMW--LHTHLIEDMISICRET 242 (334)
Q Consensus 220 ~q~~sp~--~~~~~~~~i~~tl~~v 242 (334)
--+.|.. =+...+..+++.....
T Consensus 282 YsTCSl~~~ENE~vV~~~L~~~~~~ 306 (359)
T 4fzv_A 282 YSTCSLSHLQNEYVVQGAIELLANQ 306 (359)
T ss_dssp EEESCCCTTTTHHHHHHHHHHHHHH
T ss_pred EEeCCCchhhCHHHHHHHHHhCCCC
Confidence 5444433 2334555566555443
No 122
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=92.84 E-value=0.1 Score=50.39 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=40.6
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC-CcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP-AQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp-a~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+++++.+|+.+.+. +++||+||+|.+=..+. ...-...+|++.+++.|+|||+++.-.
T Consensus 275 ~~v~~~~~D~~~~~~---~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 275 DRCEFMINNALSGVE---PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp GGEEEEECSTTTTCC---TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEechhhccCC---CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 468889999887542 45899999986421111 111223479999999999999998743
No 123
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=92.62 E-value=0.092 Score=50.84 Aligned_cols=77 Identities=25% Similarity=0.382 Sum_probs=50.4
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCc-CCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHH
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQ-ELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 240 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~-~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~ 240 (334)
.++++.+|+.+.+.. +++||+||++.+=..+... .-...+|++.+++.|+|||+++..+..... ....+.
T Consensus 281 ~v~~~~~D~~~~~~~--~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~-------~~~~l~ 351 (381)
T 3dmg_A 281 KAQALHSDVDEALTE--EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLK-------YEPLLE 351 (381)
T ss_dssp CCEEEECSTTTTSCT--TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSC-------HHHHHH
T ss_pred CeEEEEcchhhcccc--CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCC-------hHHHHH
Confidence 489999999887653 3689999997643222110 112357999999999999999975533221 224455
Q ss_pred HhcCCcee
Q 019882 241 ETFKGSVH 248 (334)
Q Consensus 241 ~vF~~~v~ 248 (334)
+.|. .+.
T Consensus 352 ~~f~-~v~ 358 (381)
T 3dmg_A 352 EKFG-AFQ 358 (381)
T ss_dssp HHHS-CCE
T ss_pred Hhhc-cEE
Confidence 6677 443
No 124
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=92.54 E-value=0.14 Score=47.02 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=39.4
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCH----HHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEK----PFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~----eFy~~v~~~L~~gGilv~q~ 222 (334)
+.|++++.+|+.+.- .+ ++||+|+.... ..++-+. .+++.+++.|+|||+++...
T Consensus 169 ~~~v~~~~~d~~~~~--~~-~~fD~v~~~~~-----~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 169 AGQITLHRQDAWKLD--TR-EGYDLLTSNGL-----NIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp GGGEEEEECCGGGCC--CC-SCEEEEECCSS-----GGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCceEEEECchhcCC--cc-CCeEEEEECCh-----hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 357999999988742 22 68999997442 1122222 48999999999999999643
No 125
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=92.47 E-value=0.069 Score=50.03 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=46.9
Q ss_pred CCeEE-EEchHHHHHhhCCCCceeEEEECCCCCCC-C--CcC----CCCHHHHHHHHHhcCCCcEEEEec-cchhhhhhH
Q 019882 161 PRVRL-HIGDAVEFLRQVPRGKYDAIIVDSSDPVG-P--AQE----LVEKPFFDTIAKALRPGGVLCNMA-ESMWLHTHL 231 (334)
Q Consensus 161 pRv~v-iv~Dg~~fL~~~~~~~yDvIIvD~~dp~g-p--a~~----L~t~eFy~~v~~~L~~gGilv~q~-~sp~~~~~~ 231 (334)
+++++ +.+|..+.- . .++||+|+.|...+.. . ... -+-.+.++.+++.|+|||.++.-. ....
T Consensus 105 ~~v~~~i~gD~~~~~--~-~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~----- 176 (290)
T 2xyq_A 105 SDADSTLIGDCATVH--T-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW----- 176 (290)
T ss_dssp CSSSEEEESCGGGCC--C-SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC-----
T ss_pred CCCEEEEECccccCC--c-cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC-----
Confidence 46888 999986532 1 2579999999754321 0 011 112478889999999999999732 1111
Q ss_pred HHHHHHHHHHh-cC
Q 019882 232 IEDMISICRET-FK 244 (334)
Q Consensus 232 ~~~i~~tl~~v-F~ 244 (334)
...+.+.+++. |.
T Consensus 177 ~~~l~~~l~~~GF~ 190 (290)
T 2xyq_A 177 NADLYKLMGHFSWW 190 (290)
T ss_dssp CHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHcCCc
Confidence 23455556655 65
No 126
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=92.45 E-value=0.13 Score=43.01 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=48.1
Q ss_pred CeEEEEchHHHHHhh-CCCCceeEEEEC-CCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccc------hhhhhhHHH
Q 019882 162 RVRLHIGDAVEFLRQ-VPRGKYDAIIVD-SSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES------MWLHTHLIE 233 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~-~~~~~yDvIIvD-~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~s------p~~~~~~~~ 233 (334)
+++++.+|+...-.. .++++||+|+.- +..-. + . -...+++.+++.|+|||.++..... +... ....
T Consensus 43 ~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~-~-~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~-~~~~ 117 (176)
T 2ld4_A 43 EGRVSVENIKQLLQSAHKESSFDIILSGLVPGST-T-L--HSAEILAEIARILRPGGCLFLKEPVETAVDNNSKV-KTAS 117 (176)
T ss_dssp TSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCC-C-C--CCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSS-CCHH
T ss_pred CcEEEEechhcCccccCCCCCEeEEEECChhhhc-c-c--CHHHHHHHHHHHCCCCEEEEEEccccccccccccc-CCHH
Confidence 489999998765321 134689999973 22211 0 1 1278999999999999999974211 0111 1235
Q ss_pred HHHHHHHHh-c
Q 019882 234 DMISICRET-F 243 (334)
Q Consensus 234 ~i~~tl~~v-F 243 (334)
.+.+.+++. |
T Consensus 118 ~~~~~l~~aGf 128 (176)
T 2ld4_A 118 KLCSALTLSGL 128 (176)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 566667665 6
No 127
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=92.38 E-value=0.095 Score=46.31 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=40.9
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+|++++.+|+... . .++++||+|+....- .++--.++++.+++.|+|||+++...
T Consensus 95 ~~~~~~~~~d~~~~-~-~~~~~fD~v~~~~~l-----~~~~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 95 ADRVKGITGSMDNL-P-FQNEELDLIWSEGAI-----YNIGFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp TTTEEEEECCTTSC-S-SCTTCEEEEEEESCS-----CCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCceEEEECChhhC-C-CCCCCEEEEEecChH-----hhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence 45899999998543 2 224689999987432 11224679999999999999998754
No 128
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=92.37 E-value=0.11 Score=43.28 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=38.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCC-CCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSS-DPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~-dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|....- .++++||+|++... -...+.. -...+++.+.+.|+|||+++...
T Consensus 89 ~~~~~~~~d~~~~~--~~~~~~D~i~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~G~l~~~~ 147 (195)
T 3cgg_A 89 PEARWVVGDLSVDQ--ISETDFDLIVSAGNVMGFLAED--GREPALANIHRALGADGRAVIGF 147 (195)
T ss_dssp TTSEEEECCTTTSC--CCCCCEEEEEECCCCGGGSCHH--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcEEEcccccCC--CCCCceeEEEECCcHHhhcChH--HHHHHHHHHHHHhCCCCEEEEEe
Confidence 35888999977631 22468999998621 1000000 01579999999999999998754
No 129
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=92.31 E-value=0.09 Score=46.04 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=39.0
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
.++++++.+|+...+.. .+.||+|+++..-+. +.+.+.+.|+|||+++...+
T Consensus 144 ~~~v~~~~~d~~~~~~~--~~~fD~I~~~~~~~~----------~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 144 SGQLLIVEGDGRKGYPP--NAPYNAIHVGAAAPD----------TPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp HTSEEEEESCGGGCCGG--GCSEEEEEECSCBSS----------CCHHHHHTEEEEEEEEEEES
T ss_pred CCceEEEECCcccCCCc--CCCccEEEECCchHH----------HHHHHHHHhcCCCEEEEEEe
Confidence 36899999999874433 257999999875332 22788999999999997554
No 130
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=92.24 E-value=0.12 Score=50.96 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=43.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCCCcCC-----------------CCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGPAQEL-----------------VEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gpa~~L-----------------~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+..+....++++||+|++|++- ..|...+- ...++++.+.+.|+|||.++..+
T Consensus 310 ~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t 389 (450)
T 2yxl_A 310 KIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT 389 (450)
T ss_dssp CSEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CcEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 4799999998776432323579999999753 11211000 11678999999999999999644
Q ss_pred cc
Q 019882 223 ES 224 (334)
Q Consensus 223 ~s 224 (334)
.+
T Consensus 390 cs 391 (450)
T 2yxl_A 390 CS 391 (450)
T ss_dssp SC
T ss_pred CC
Confidence 33
No 131
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=92.11 E-value=0.08 Score=47.43 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=41.5
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.++++++.+|+.+.- .++++||+|+....- .++-...+++.+++.|+|||+++...
T Consensus 95 ~~~v~~~~~d~~~~~--~~~~~fD~i~~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 95 QNRVTGIVGSMDDLP--FRNEELDLIWSEGAI-----YNIGFERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp TTTEEEEECCTTSCC--CCTTCEEEEEESSCG-----GGTCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CcCcEEEEcChhhCC--CCCCCEEEEEEcCCc-----eecCHHHHHHHHHHHcCCCCEEEEEE
Confidence 478999999986532 124689999986431 12223679999999999999998754
No 132
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=91.89 E-value=0.18 Score=45.55 Aligned_cols=58 Identities=22% Similarity=0.313 Sum_probs=42.1
Q ss_pred CCeEEEEchHHHHHhhC-CCCceeEEEEC--CCCCCCCCcCCC--------CHHHHHHHHHhcCCCcEEEEeccc
Q 019882 161 PRVRLHIGDAVEFLRQV-PRGKYDAIIVD--SSDPVGPAQELV--------EKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~-~~~~yDvIIvD--~~dp~gpa~~L~--------t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
+++.++.+|....-... .+++||+|++- +. .++. -..+++.+++.|+|||+++....+
T Consensus 109 ~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l------~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 109 DKWVIEEANWLTLDKDVPAGDGFDAVICLGNSF------AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp HTCEEEECCGGGHHHHSCCTTCEEEEEECTTCG------GGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ceeeEeecChhhCccccccCCCeEEEEEcChHH------hhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 58899999988765221 34689999984 22 1222 267999999999999999976543
No 133
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=91.87 E-value=0.65 Score=38.09 Aligned_cols=65 Identities=8% Similarity=0.111 Sum_probs=46.9
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 240 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~ 240 (334)
++++++.+|..+.+.. ++||+|+++.. -...++++.+++. |||.++....++ .....+.+.++
T Consensus 83 ~~~~~~~~d~~~~~~~---~~~D~i~~~~~--------~~~~~~l~~~~~~--~gG~l~~~~~~~----~~~~~~~~~l~ 145 (183)
T 2yxd_A 83 KNCQIIKGRAEDVLDK---LEFNKAFIGGT--------KNIEKIIEILDKK--KINHIVANTIVL----ENAAKIINEFE 145 (183)
T ss_dssp CSEEEEESCHHHHGGG---CCCSEEEECSC--------SCHHHHHHHHHHT--TCCEEEEEESCH----HHHHHHHHHHH
T ss_pred CcEEEEECCccccccC---CCCcEEEECCc--------ccHHHHHHHHhhC--CCCEEEEEeccc----ccHHHHHHHHH
Confidence 5899999999986653 47999999876 1235788898888 999998754332 23445666666
Q ss_pred Hh
Q 019882 241 ET 242 (334)
Q Consensus 241 ~v 242 (334)
+.
T Consensus 146 ~~ 147 (183)
T 2yxd_A 146 SR 147 (183)
T ss_dssp HT
T ss_pred Hc
Confidence 65
No 134
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=91.79 E-value=0.15 Score=43.29 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=40.3
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
+++++++.+|+.+.- .++++||+|+....-..-+ -...+++.+++.|+|||.++..
T Consensus 92 ~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 92 NDRIQIVQGDVHNIP--IEDNYADLIVSRGSVFFWE----DVATAFREIYRILKSGGKTYIG 147 (219)
T ss_dssp TTTEEEEECBTTBCS--SCTTCEEEEEEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCceEEEEcCHHHCC--CCcccccEEEECchHhhcc----CHHHHHHHHHHhCCCCCEEEEE
Confidence 469999999986532 2346899999865311111 1257999999999999999874
No 135
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=91.73 E-value=0.3 Score=46.65 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=50.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcC-------C--------------------CCHHHHHHHHHhcC
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQE-------L--------------------VEKPFFDTIAKALR 213 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~-------L--------------------~t~eFy~~v~~~L~ 213 (334)
++++++.+|...+.. .++||+||.+.+ .+.... + .-..|++.+.+.|+
T Consensus 81 ~~~~~~~~D~~~~~~---~~~fD~Ii~NPP--y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk 155 (421)
T 2ih2_A 81 PWAEGILADFLLWEP---GEAFDLILGNPP--YGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLK 155 (421)
T ss_dssp TTEEEEESCGGGCCC---SSCEEEEEECCC--CCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEE
T ss_pred CCCcEEeCChhhcCc---cCCCCEEEECcC--ccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhC
Confidence 589999999887532 357999999753 221110 0 11378999999999
Q ss_pred CCcEEEEeccchhhhhhHHHHHHHHHHHh
Q 019882 214 PGGVLCNMAESMWLHTHLIEDMISICRET 242 (334)
Q Consensus 214 ~gGilv~q~~sp~~~~~~~~~i~~tl~~v 242 (334)
|||.++.-..+.++.......+.+.+.+.
T Consensus 156 ~~G~~~~i~p~~~l~~~~~~~lr~~l~~~ 184 (421)
T 2ih2_A 156 PGGVLVFVVPATWLVLEDFALLREFLARE 184 (421)
T ss_dssp EEEEEEEEEEGGGGTCGGGHHHHHHHHHH
T ss_pred CCCEEEEEEChHHhcCccHHHHHHHHHhc
Confidence 99999876655554333344454555443
No 136
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=91.71 E-value=0.21 Score=49.84 Aligned_cols=63 Identities=29% Similarity=0.354 Sum_probs=44.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCC----CcC--CC-----------CHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGP----AQE--LV-----------EKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gp----a~~--L~-----------t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+..+.... .+.||+|++|++- ..|. +.. .. ..++++.+.+.|+|||+++.-+
T Consensus 168 ~nv~~~~~D~~~~~~~~-~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT 246 (479)
T 2frx_A 168 SNVALTHFDGRVFGAAV-PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST 246 (479)
T ss_dssp CSEEEECCCSTTHHHHS-TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcEEEEeCCHHHhhhhc-cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 47999999998876533 3579999999763 2221 111 11 2578888999999999999644
Q ss_pred cc
Q 019882 223 ES 224 (334)
Q Consensus 223 ~s 224 (334)
.+
T Consensus 247 cs 248 (479)
T 2frx_A 247 CT 248 (479)
T ss_dssp SC
T ss_pred cc
Confidence 33
No 137
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=91.69 E-value=0.11 Score=48.31 Aligned_cols=52 Identities=23% Similarity=0.224 Sum_probs=39.0
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
++++++.+|+.+.+.. +++||+|+++..-. ++. +.+.+.|+|||+++.+...
T Consensus 126 ~~v~~~~~d~~~~~~~--~~~fD~Iv~~~~~~-----~~~-----~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 126 ENVIFVCGDGYYGVPE--FSPYDVIFVTVGVD-----EVP-----ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CSEEEEESCGGGCCGG--GCCEEEEEECSBBS-----CCC-----HHHHHHEEEEEEEEEEBCB
T ss_pred CCeEEEECChhhcccc--CCCeEEEEEcCCHH-----HHH-----HHHHHhcCCCcEEEEEECC
Confidence 4599999999876543 25799999986432 111 6788999999999987643
No 138
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=91.66 E-value=0.081 Score=46.09 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=38.7
Q ss_pred CCCeEEEEchHHHHH----hhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFL----RQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL----~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.++++++.+|+.+.. .. .++||+|+++..-+ + +.+.+.+.|+|||+++...
T Consensus 139 ~~~v~~~~~d~~~~~~~~~~~--~~~fD~I~~~~~~~-----~-----~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 139 IDNFKIIHKNIYQVNEEEKKE--LGLFDAIHVGASAS-----E-----LPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp STTEEEEECCGGGCCHHHHHH--HCCEEEEEECSBBS-----S-----CCHHHHHHEEEEEEEEEEE
T ss_pred cCCEEEEECChHhcccccCcc--CCCcCEEEECCchH-----H-----HHHHHHHhcCCCcEEEEEE
Confidence 468999999998743 22 25799999987543 1 3478899999999998754
No 139
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=91.64 E-value=0.088 Score=46.37 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=39.6
Q ss_pred CCeEEEEchHHHHHh--hCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLR--QVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~--~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
++++++.+|+..... ... ++||+|+.|..+|. -...+++.+.+.|+|||+++.
T Consensus 122 ~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i 176 (230)
T 1fbn_A 122 ENIIPILGDANKPQEYANIV-EKVDVIYEDVAQPN------QAEILIKNAKWFLKKGGYGMI 176 (230)
T ss_dssp TTEEEEECCTTCGGGGTTTS-CCEEEEEECCCSTT------HHHHHHHHHHHHEEEEEEEEE
T ss_pred CCeEEEECCCCCcccccccC-ccEEEEEEecCChh------HHHHHHHHHHHhCCCCcEEEE
Confidence 789999999876211 122 57999998875442 125689999999999999986
No 140
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=91.45 E-value=0.18 Score=46.32 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=48.5
Q ss_pred CeEEE--EchHHHHHhhCCCCceeEEEECCCCCCCCCcCCC----CHHHHHHHHHhcCCCc--EEEEeccchhhhhhHHH
Q 019882 162 RVRLH--IGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELV----EKPFFDTIAKALRPGG--VLCNMAESMWLHTHLIE 233 (334)
Q Consensus 162 Rv~vi--v~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~----t~eFy~~v~~~L~~gG--ilv~q~~sp~~~~~~~~ 233 (334)
++.++ .+|+..+ ++++||+|+.|.. ...+ .... +...++.+.+.|+||| .++...-.+.. ..+.
T Consensus 123 ~v~~~~~~~D~~~l----~~~~fD~V~sd~~-~~~~-~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~--~~~~ 194 (265)
T 2oxt_A 123 NIVKFKSRVDIHTL----PVERTDVIMCDVG-ESSP-KWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYS--VEVM 194 (265)
T ss_dssp GGEEEECSCCTTTS----CCCCCSEEEECCC-CCCS-CHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTS--HHHH
T ss_pred CeEEEecccCHhHC----CCCCCcEEEEeCc-ccCC-ccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCC--hhHH
Confidence 67888 8887762 2468999999976 2211 1111 1137888999999999 88874433322 1233
Q ss_pred HHHHHHHHhcC
Q 019882 234 DMISICRETFK 244 (334)
Q Consensus 234 ~i~~tl~~vF~ 244 (334)
..+..+++.|.
T Consensus 195 ~~l~~l~~~f~ 205 (265)
T 2oxt_A 195 ERLSVMQRKWG 205 (265)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcC
Confidence 56677788887
No 141
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=91.41 E-value=0.2 Score=48.86 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=42.8
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCCCcCC-----------------CCHHHHHHHHHhcCCCcEEEEecc
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGPAQEL-----------------VEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gpa~~L-----------------~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
+++++.+|+..+....++++||+|++|.+- ..|...+. ...++++.+.+.|+|||.++..+.
T Consensus 296 ~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 296 KATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp CCEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred CeEEEeCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 478999999876532223579999999863 22211111 125889999999999999997543
Q ss_pred c
Q 019882 224 S 224 (334)
Q Consensus 224 s 224 (334)
+
T Consensus 376 s 376 (429)
T 1sqg_A 376 S 376 (429)
T ss_dssp C
T ss_pred C
Confidence 3
No 142
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=91.26 E-value=0.13 Score=44.70 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=39.9
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCC-CCHHHHHHHH-HhcCCCcEEEEecc
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQEL-VEKPFFDTIA-KALRPGGVLCNMAE 223 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L-~t~eFy~~v~-~~L~~gGilv~q~~ 223 (334)
+++++.+|+.+.. .+++||+|++-..= .++ -...+++.++ +.|+|||.++....
T Consensus 87 ~v~~~~~d~~~~~---~~~~fD~v~~~~~l-----~~~~~~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 87 GITYIHSRFEDAQ---LPRRYDNIVLTHVL-----EHIDDPVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp CEEEEESCGGGCC---CSSCEEEEEEESCG-----GGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CeEEEEccHHHcC---cCCcccEEEEhhHH-----HhhcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 8999999987762 34689999975321 111 1157999999 99999999987553
No 143
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=91.24 E-value=0.18 Score=42.86 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=40.6
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+.++ .- ++++||+|+....-..-+ .---..+++.+++.|+|||.++...
T Consensus 84 ~~~~~~~~d~~~~-~~-~~~~fD~v~~~~~l~~~~--~~~~~~~l~~~~~~L~pgG~l~i~~ 141 (203)
T 3h2b_A 84 PSVTFHHGTITDL-SD-SPKRWAGLLAWYSLIHMG--PGELPDALVALRMAVEDGGGLLMSF 141 (203)
T ss_dssp TTSEEECCCGGGG-GG-SCCCEEEEEEESSSTTCC--TTTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCeEEeCccccc-cc-CCCCeEEEEehhhHhcCC--HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5899999998774 22 246899999854211111 0023679999999999999998643
No 144
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=91.19 E-value=0.059 Score=45.91 Aligned_cols=62 Identities=19% Similarity=0.429 Sum_probs=41.2
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCC---------CCCCCCc--CCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS---------DPVGPAQ--ELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~---------dp~gpa~--~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
.++++++.+|+.+. ..++++||+||.... ++..... .--...+++.+++.|+|||+++...-
T Consensus 88 ~~~i~~~~~d~~~~--~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 88 VPQLRWETMDVRKL--DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp CTTCEEEECCTTSC--CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCcEEEEcchhcC--CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 47899999998764 223468999996432 0111000 00126799999999999999997553
No 145
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=91.08 E-value=0.16 Score=44.91 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=43.4
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchh
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMW 226 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~ 226 (334)
.++++++.+|+... . .++++||+|+....=..-+ --..+++.+++.|+|||+++....++.
T Consensus 89 ~~~~~~~~~d~~~~-~-~~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~ 149 (253)
T 3g5l_A 89 SPVVCYEQKAIEDI-A-IEPDAYNVVLSSLALHYIA----SFDDICKKVYINLKSSGSFIFSVEHPV 149 (253)
T ss_dssp CTTEEEEECCGGGC-C-CCTTCEEEEEEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred cCCeEEEEcchhhC-C-CCCCCeEEEEEchhhhhhh----hHHHHHHHHHHHcCCCcEEEEEeCCCc
Confidence 57999999998653 2 2246899999854211000 126799999999999999998655543
No 146
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=90.90 E-value=0.14 Score=46.22 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=47.1
Q ss_pred CCeEEEEchHHHHHh-hCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchh----h-hhhHHHH
Q 019882 161 PRVRLHIGDAVEFLR-QVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMW----L-HTHLIED 234 (334)
Q Consensus 161 pRv~viv~Dg~~fL~-~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~----~-~~~~~~~ 234 (334)
+++.++.+|+..--. ....++||+|++|.+.|.- ..-+.+.+++.|+|||.++....+.. . ..+.++.
T Consensus 125 ~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~~~~------~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~ 198 (232)
T 3id6_C 125 PNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQ------TDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKT 198 (232)
T ss_dssp TTEEEEECCTTCGGGTTTTCCCEEEEEECCCCTTH------HHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTH
T ss_pred CCeEEEEcccccchhhhccccceEEEEecCCChhH------HHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHH
Confidence 589999999875321 1113579999999865321 12245566779999999986431111 1 1123456
Q ss_pred HHHHHHHh-cC
Q 019882 235 MISICRET-FK 244 (334)
Q Consensus 235 i~~tl~~v-F~ 244 (334)
..+.|++. |.
T Consensus 199 ~~~~L~~~gf~ 209 (232)
T 3id6_C 199 EVEKLENSNFE 209 (232)
T ss_dssp HHHHHHHTTEE
T ss_pred HHHHHHHCCCE
Confidence 66777653 55
No 147
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=90.73 E-value=0.14 Score=48.53 Aligned_cols=60 Identities=23% Similarity=0.207 Sum_probs=41.6
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++++++.+|..+. ..++++||+|+.+....... ..-.-..+++.+.+.|+|||+++...
T Consensus 114 ~~~v~~~~~d~~~~--~~~~~~fD~Iis~~~~~~l~-~~~~~~~~l~~~~r~LkpgG~li~~~ 173 (349)
T 3q7e_A 114 DHVVTIIKGKVEEV--ELPVEKVDIIISEWMGYCLF-YESMLNTVLHARDKWLAPDGLIFPDR 173 (349)
T ss_dssp TTTEEEEESCTTTC--CCSSSCEEEEEECCCBBTBT-BTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred CCcEEEEECcHHHc--cCCCCceEEEEEcccccccc-CchhHHHHHHHHHHhCCCCCEEcccc
Confidence 46899999998776 22346899999976321111 11123568899999999999997433
No 148
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=90.47 E-value=0.34 Score=45.51 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=49.1
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC------------CcCC--CCHHHHHHHHHhcCCCcEEEEeccchhh
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP------------AQEL--VEKPFFDTIAKALRPGGVLCNMAESMWL 227 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp------------a~~L--~t~eFy~~v~~~L~~gGilv~q~~sp~~ 227 (334)
+++++.+|+.... ..++||+||.+.+=...+ ...+ +...|++.+.+.|+|||+++.-..+.++
T Consensus 185 ~~~i~~~D~l~~~---~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~ 261 (344)
T 2f8l_A 185 KMTLLHQDGLANL---LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMF 261 (344)
T ss_dssp CCEEEESCTTSCC---CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGG
T ss_pred CceEEECCCCCcc---ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhc
Confidence 6889999976532 236799999987510000 0011 1236999999999999998876544455
Q ss_pred hhhHHHHHHHHHHHh
Q 019882 228 HTHLIEDMISICRET 242 (334)
Q Consensus 228 ~~~~~~~i~~tl~~v 242 (334)
.......+.+.+.+.
T Consensus 262 ~~~~~~~ir~~l~~~ 276 (344)
T 2f8l_A 262 GTSDFAKVDKFIKKN 276 (344)
T ss_dssp GSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhC
Confidence 444445555555543
No 149
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=90.46 E-value=0.17 Score=48.35 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=42.7
Q ss_pred CCCCCeEEEEchHHHHHh----hCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 158 FEDPRVRLHIGDAVEFLR----QVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 158 ~~dpRv~viv~Dg~~fL~----~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
+..++++++.+|+.+... ..++++||+|+....-..-+ --..+++.+++.|+|||+++..
T Consensus 139 ~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~----d~~~~l~~~~r~LkpgG~l~i~ 202 (383)
T 4fsd_A 139 PSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLST----NKLALFKEIHRVLRDGGELYFS 202 (383)
T ss_dssp TTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcCC----CHHHHHHHHHHHcCCCCEEEEE
Confidence 445899999999876521 12346899999875321111 1257999999999999999864
No 150
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=90.46 E-value=0.15 Score=48.14 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=39.2
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
.++++++.+|+.++ ..++++||+||.+... ......-.-..+++.+++.|+|||+++
T Consensus 112 ~~~i~~~~~d~~~~--~~~~~~~D~Ivs~~~~-~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 112 EDTITLIKGKIEEV--HLPVEKVDVIISEWMG-YFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTTEEEEESCTTTS--CCSCSCEEEEEECCCB-TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CCcEEEEEeeHHHh--cCCCCcEEEEEEcCch-hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 36999999998764 2233689999987531 111011112468889999999999998
No 151
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=90.41 E-value=0.26 Score=45.48 Aligned_cols=79 Identities=10% Similarity=0.086 Sum_probs=49.7
Q ss_pred CeEEE--EchHHHHHhhCCCCceeEEEECCCCCCCCCc---CCCCHHHHHHHHHhcCCCc--EEEEeccchhhhhhHHHH
Q 019882 162 RVRLH--IGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQ---ELVEKPFFDTIAKALRPGG--VLCNMAESMWLHTHLIED 234 (334)
Q Consensus 162 Rv~vi--v~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~---~L~t~eFy~~v~~~L~~gG--ilv~q~~sp~~~~~~~~~ 234 (334)
+++++ .+|...+ ++++||+|+.|.. ...+.. ..-+...++.+.+.|+||| .++...-.|.. ..+..
T Consensus 131 ~v~~~~~~~D~~~l----~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~--~~~~~ 203 (276)
T 2wa2_A 131 NLITFKSKVDVTKM----EPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYS--CDVLE 203 (276)
T ss_dssp GGEEEECSCCGGGC----CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCS--HHHHH
T ss_pred CeEEEeccCcHhhC----CCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCc--hhHHH
Confidence 68888 8897762 2468999999976 221110 0001136788999999999 88874433332 12335
Q ss_pred HHHHHHHhcCCcee
Q 019882 235 MISICRETFKGSVH 248 (334)
Q Consensus 235 i~~tl~~vF~~~v~ 248 (334)
.++.+++.|. .+.
T Consensus 204 ~l~~l~~~f~-~v~ 216 (276)
T 2wa2_A 204 ALMKMQARFG-GGL 216 (276)
T ss_dssp HHHHHHHHHC-CEE
T ss_pred HHHHHHHHcC-CEE
Confidence 5677788887 443
No 152
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=90.38 E-value=0.19 Score=43.13 Aligned_cols=53 Identities=21% Similarity=0.321 Sum_probs=38.6
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCC---HHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE---KPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t---~eFy~~v~~~L~~gGilv~q 221 (334)
++++++.+|+.++- .+ ++||+|+....- .++-. ..+++.+++.|+|||.++..
T Consensus 89 ~~~~~~~~d~~~~~--~~-~~fD~v~~~~~l-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 144 (220)
T 3hnr_A 89 KEFSITEGDFLSFE--VP-TSIDTIVSTYAF-----HHLTDDEKNVAIAKYSQLLNKGGKIVFA 144 (220)
T ss_dssp TTCCEESCCSSSCC--CC-SCCSEEEEESCG-----GGSCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CceEEEeCChhhcC--CC-CCeEEEEECcch-----hcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 58899999987642 22 689999986421 12222 33899999999999999875
No 153
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=90.29 E-value=0.26 Score=46.51 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=42.7
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCC--cCC--CCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPA--QEL--VEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa--~~L--~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
+++++.+|+.++.... ..||+||+|.+=..... ..+ .-.++++.+++.|+|||.++..+.+
T Consensus 255 ~i~~~~~D~~~~~~~~--~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 255 WIRFLRADARHLPRFF--PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp TCEEEECCGGGGGGTC--CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred ceEEEeCChhhCcccc--CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 8999999998875433 46999999975221111 111 1167889999999999999986544
No 154
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=90.23 E-value=0.3 Score=44.15 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=56.5
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCC-CC------------CCCcCC--------CCHHHHHHHHHhcCCCcEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PV------------GPAQEL--------VEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~------------gpa~~L--------~t~eFy~~v~~~L~~gGilv 219 (334)
++++++.+|..+.+. .++||+|+.+.+- +. .|...| .-..+++.+.+.|+|||+++
T Consensus 159 ~~v~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~ 235 (276)
T 2b3t_A 159 KNIHILQSDWFSALA---GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLL 235 (276)
T ss_dssp CSEEEECCSTTGGGT---TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred CceEEEEcchhhhcc---cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 479999999887653 3579999998532 11 111122 23678889999999999999
Q ss_pred EeccchhhhhhHHHHHHHHHHHh-cCCceeEEEEEeeecCCCcEEEEEee
Q 019882 220 NMAESMWLHTHLIEDMISICRET-FKGSVHYAWASVPTYPSGIIGFLICS 268 (334)
Q Consensus 220 ~q~~sp~~~~~~~~~i~~tl~~v-F~~~v~~~~~~vPsyp~g~w~f~laS 268 (334)
...+ +.... .+.+.+++. |. .+.. .+.+ .|.-.|++|.
T Consensus 236 ~~~~--~~~~~---~~~~~l~~~Gf~-~v~~----~~d~-~g~~r~~~~~ 274 (276)
T 2b3t_A 236 LEHG--WQQGE---AVRQAFILAGYH-DVET----CRDY-GDNERVTLGR 274 (276)
T ss_dssp EECC--SSCHH---HHHHHHHHTTCT-TCCE----EECT-TSSEEEEEEE
T ss_pred EEEC--chHHH---HHHHHHHHCCCc-EEEE----EecC-CCCCcEEEEE
Confidence 7542 22222 233334443 76 4432 2333 3566677664
No 155
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=90.22 E-value=0.11 Score=45.79 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=39.2
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
+++++++.+|+.+... +++||+|+.-..-. ... --..+++.+++.|+|||.++..
T Consensus 85 ~~~v~~~~~d~~~~~~---~~~fD~V~~~~~~~-~~~---~~~~~l~~~~r~LkpgG~l~~~ 139 (256)
T 1nkv_A 85 SERVHFIHNDAAGYVA---NEKCDVAACVGATW-IAG---GFAGAEELLAQSLKPGGIMLIG 139 (256)
T ss_dssp TTTEEEEESCCTTCCC---SSCEEEEEEESCGG-GTS---SSHHHHHHHTTSEEEEEEEEEE
T ss_pred CcceEEEECChHhCCc---CCCCCEEEECCChH-hcC---CHHHHHHHHHHHcCCCeEEEEe
Confidence 3689999999876432 36799999722110 000 1368999999999999999863
No 156
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=90.20 E-value=0.12 Score=46.22 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=40.5
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+.+.. .++++||+|+....-..-+. ...+++.+++.|+|||+++...
T Consensus 87 ~~~~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 87 KNVKFLQANIFSLP--FEDSSFDHIFVCFVLEHLQS----PEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp CSEEEEECCGGGCC--SCTTCEEEEEEESCGGGCSC----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcEEEEcccccCC--CCCCCeeEEEEechhhhcCC----HHHHHHHHHHHcCCCcEEEEEE
Confidence 57999999988643 22468999998653211111 1479999999999999998743
No 157
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=90.19 E-value=0.24 Score=44.16 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=39.7
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECC-CCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDS-SDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~-~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.++++++.+|+.+. . .++++||+|+.-. ...... ...+++.+++.|+|||.++...
T Consensus 110 ~~~~~~~~~d~~~~-~-~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 110 ANRVTFSYADAMDL-P-FEDASFDAVWALESLHHMPD-----RGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp TTTEEEEECCTTSC-C-SCTTCEEEEEEESCTTTSSC-----HHHHHHHHHTTEEEEEEEEEEE
T ss_pred CcceEEEECccccC-C-CCCCCccEEEEechhhhCCC-----HHHHHHHHHHHcCCCeEEEEEE
Confidence 35899999998652 2 2346899999643 221111 1689999999999999998643
No 158
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=90.12 E-value=0.53 Score=40.30 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=55.9
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccc-hhhhhhHHHHHHHHHH
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES-MWLHTHLIEDMISICR 240 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~s-p~~~~~~~~~i~~tl~ 240 (334)
+++++.+|+.+ +. .++++||+|+....-.. --...+++.+++.|+|||.++...-. .+. ....+.+.+.
T Consensus 98 ~~~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~-----~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~---~~~~~~~~l~ 167 (215)
T 2zfu_A 98 DPRVTVCDMAQ-VP-LEDESVDVAVFCLSLMG-----TNIRDFLEEANRVLKPGGLLKVAEVSSRFE---DVRTFLRAVT 167 (215)
T ss_dssp STTEEESCTTS-CS-CCTTCEEEEEEESCCCS-----SCHHHHHHHHHHHEEEEEEEEEEECGGGCS---CHHHHHHHHH
T ss_pred CceEEEecccc-CC-CCCCCEeEEEEehhccc-----cCHHHHHHHHHHhCCCCeEEEEEEcCCCCC---CHHHHHHHHH
Confidence 67788888765 22 23467999997543111 12368999999999999999864322 121 2334445555
Q ss_pred Hh-cCCceeEEEEEeeecCCCcEEEEEeecCC
Q 019882 241 ET-FKGSVHYAWASVPTYPSGIIGFLICSTEG 271 (334)
Q Consensus 241 ~v-F~~~v~~~~~~vPsyp~g~w~f~laSk~~ 271 (334)
+. |. .+. +. +..+.|.++++.|..
T Consensus 168 ~~Gf~-~~~-----~~-~~~~~~~~~~~~k~~ 192 (215)
T 2zfu_A 168 KLGFK-IVS-----KD-LTNSHFFLFDFQKTG 192 (215)
T ss_dssp HTTEE-EEE-----EE-CCSTTCEEEEEEECS
T ss_pred HCCCE-EEE-----Ee-cCCCeEEEEEEEecC
Confidence 54 55 322 22 223567777887764
No 159
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=90.10 E-value=0.72 Score=41.37 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=54.2
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHh
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET 242 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~v 242 (334)
++++.+|..+.+. +++||+|+.+.... . -.++++.+.+.|+|||.++...-.. .....+.+.+++.
T Consensus 169 v~~~~~d~~~~~~---~~~fD~Vv~n~~~~-----~--~~~~l~~~~~~LkpgG~lils~~~~----~~~~~v~~~l~~~ 234 (254)
T 2nxc_A 169 PRFLEGSLEAALP---FGPFDLLVANLYAE-----L--HAALAPRYREALVPGGRALLTGILK----DRAPLVREAMAGA 234 (254)
T ss_dssp CEEEESCHHHHGG---GCCEEEEEEECCHH-----H--HHHHHHHHHHHEEEEEEEEEEEEEG----GGHHHHHHHHHHT
T ss_pred EEEEECChhhcCc---CCCCCEEEECCcHH-----H--HHHHHHHHHHHcCCCCEEEEEeecc----CCHHHHHHHHHHC
Confidence 8999999988753 24799999865311 1 2578999999999999999743111 1234555666655
Q ss_pred -cCCceeEEEEEeeecCCCcEEEEEee
Q 019882 243 -FKGSVHYAWASVPTYPSGIIGFLICS 268 (334)
Q Consensus 243 -F~~~v~~~~~~vPsyp~g~w~f~laS 268 (334)
|. .+.. -. .+.|..+++.
T Consensus 235 Gf~-~~~~-----~~--~~~W~~l~~~ 253 (254)
T 2nxc_A 235 GFR-PLEE-----AA--EGEWVLLAYG 253 (254)
T ss_dssp TCE-EEEE-----EE--ETTEEEEEEE
T ss_pred CCE-EEEE-----ec--cCCeEEEEEE
Confidence 65 3222 12 2567666654
No 160
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=90.07 E-value=0.089 Score=48.09 Aligned_cols=57 Identities=18% Similarity=0.412 Sum_probs=41.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCC----HHHHHHHHHhcCCCcEEEEeccch
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE----KPFFDTIAKALRPGGVLCNMAESM 225 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t----~eFy~~v~~~L~~gGilv~q~~sp 225 (334)
.+++++.+|+.++- . +++||+||+... ..+..+ ..+++.+++.|+|||+++....++
T Consensus 133 ~~v~~~~~d~~~~~--~-~~~fD~v~~~~~-----~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 133 DRCTLVQGDMSAFA--L-DKRFGTVVISSG-----SINELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp TTEEEEECBTTBCC--C-SCCEEEEEECHH-----HHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred cceEEEeCchhcCC--c-CCCcCEEEECCc-----ccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 68999999987742 2 468999886321 112233 679999999999999999865443
No 161
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=90.03 E-value=0.12 Score=46.04 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=36.5
Q ss_pred EEEchHHHHHhh---CCCCceeEEEECCCCCCCCCcC-------CCCHHHHHHHHHhcCCCcEEEE
Q 019882 165 LHIGDAVEFLRQ---VPRGKYDAIIVDSSDPVGPAQE-------LVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 165 viv~Dg~~fL~~---~~~~~yDvIIvD~~dp~gpa~~-------L~t~eFy~~v~~~L~~gGilv~ 220 (334)
++.+|..+.+.. ..+++||+||.+.+ ...... -.-..|++.+.+.|+|||+++.
T Consensus 149 ~~~~D~~~~~~~~~~~~~~~fD~Iv~npp--~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 212 (250)
T 1o9g_A 149 IRTADVFDPRALSAVLAGSAPDVVLTDLP--YGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAV 212 (250)
T ss_dssp EEECCTTCGGGHHHHHTTCCCSEEEEECC--GGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred eeecccccccccccccCCCCceEEEeCCC--eeccccccccccccHHHHHHHHHHHhcCCCcEEEE
Confidence 888998776531 01347999999842 211111 1124789999999999999997
No 162
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=90.02 E-value=0.13 Score=43.28 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=38.3
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
++++++.+|....-. +++||+|+....-..-+.. -...+++.+++.|+|||.++.
T Consensus 80 ~~~~~~~~d~~~~~~---~~~~D~v~~~~~l~~~~~~--~~~~~l~~~~~~L~~gG~l~~ 134 (199)
T 2xvm_A 80 DNLHTRVVDLNNLTF---DRQYDFILSTVVLMFLEAK--TIPGLIANMQRCTKPGGYNLI 134 (199)
T ss_dssp TTEEEEECCGGGCCC---CCCEEEEEEESCGGGSCGG--GHHHHHHHHHHTEEEEEEEEE
T ss_pred CCcEEEEcchhhCCC---CCCceEEEEcchhhhCCHH--HHHHHHHHHHHhcCCCeEEEE
Confidence 479999999876422 3689999976431111100 226799999999999999764
No 163
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=90.01 E-value=0.06 Score=47.23 Aligned_cols=50 Identities=10% Similarity=0.107 Sum_probs=37.1
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
.++++++.+|+.+.+.-..+++||+|+.. .++ ..+++.+++.|+|||+++
T Consensus 90 ~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-~~~---------~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 90 APHADVYEWNGKGELPAGLGAPFGLIVSR-RGP---------TSVILRLPELAAPDAHFL 139 (226)
T ss_dssp CTTSEEEECCSCSSCCTTCCCCEEEEEEE-SCC---------SGGGGGHHHHEEEEEEEE
T ss_pred CCCceEEEcchhhccCCcCCCCEEEEEeC-CCH---------HHHHHHHHHHcCCCcEEE
Confidence 35899999998654432214689999986 222 247889999999999999
No 164
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=89.99 E-value=0.29 Score=44.36 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=38.3
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECC-CCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDS-SDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~-~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
.++++++.+|+.+.-... .++||+|+.=. .....+. --..+++.+++.|+|||+++
T Consensus 132 ~~~i~~~~~D~~~l~~~~-~~~FD~V~~~~~l~~l~~~---~~~~~l~~~~~~LkpGG~l~ 188 (252)
T 2gb4_A 132 SGSISLYCCSIFDLPRAN-IGKFDRIWDRGALVAINPG---DHDRYADIILSLLRKEFQYL 188 (252)
T ss_dssp TSSEEEEESCTTTGGGGC-CCCEEEEEESSSTTTSCGG---GHHHHHHHHHHTEEEEEEEE
T ss_pred CCceEEEECccccCCccc-CCCEEEEEEhhhhhhCCHH---HHHHHHHHHHHHcCCCeEEE
Confidence 478999999988754322 26899998532 1111111 12468999999999999985
No 165
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=89.92 E-value=0.15 Score=48.86 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=41.3
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++++++.+|+.++. .+ ++||+||.+...-... ..-.-..+++.+.+.|+|||+++...
T Consensus 111 ~~~v~~~~~d~~~~~--~~-~~~D~Iv~~~~~~~l~-~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 111 DHIVEVIEGSVEDIS--LP-EKVDVIISEWMGYFLL-RESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp TTTEEEEESCGGGCC--CS-SCEEEEEECCCBTTBT-TTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred CCeEEEEECchhhcC--cC-CcceEEEEcChhhccc-chHHHHHHHHHHHhhCCCCeEEEEec
Confidence 468999999987653 22 6899999976322111 11123568999999999999998643
No 166
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=89.85 E-value=0.3 Score=42.45 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=38.9
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCC---HHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE---KPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t---~eFy~~v~~~L~~gGilv~q 221 (334)
++++++.+|+.+... .++||+|++... ..++-. .++++.+++.|+|||+++..
T Consensus 92 ~~~~~~~~d~~~~~~---~~~fD~v~~~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 147 (234)
T 3dtn_A 92 LKVKYIEADYSKYDF---EEKYDMVVSALS-----IHHLEDEDKKELYKRSYSILKESGIFINA 147 (234)
T ss_dssp TTEEEEESCTTTCCC---CSCEEEEEEESC-----GGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEEeCchhccCC---CCCceEEEEeCc-----cccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 499999999876532 258999998642 122222 24899999999999999863
No 167
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=89.83 E-value=0.2 Score=43.02 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=37.0
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
++++++.+|+...+.. ++.||+||++..-+.- .+.+.+.|+|||.++....
T Consensus 128 ~~v~~~~~d~~~~~~~--~~~fD~v~~~~~~~~~----------~~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 128 DNVIVIVGDGTLGYEP--LAPYDRIYTTAAGPKI----------PEPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp TTEEEEESCGGGCCGG--GCCEEEEEESSBBSSC----------CHHHHHTEEEEEEEEEEES
T ss_pred CCeEEEECCcccCCCC--CCCeeEEEECCchHHH----------HHHHHHHcCCCcEEEEEEC
Confidence 4699999998654432 3579999998643221 1588999999999997553
No 168
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=89.82 E-value=0.15 Score=45.02 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=40.5
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+.+. ..++++||+|+....- ...+. --..+++.+++.|+|||.++...
T Consensus 102 ~~~~~~~~d~~~~--~~~~~~fD~v~~~~~l~~~~~~---~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 102 NKIIFEANDILTK--EFPENNFDLIYSRDAILALSLE---NKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp TTEEEEECCTTTC--CCCTTCEEEEEEESCGGGSCHH---HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeEEEECccccC--CCCCCcEEEEeHHHHHHhcChH---HHHHHHHHHHHHcCCCCEEEEEE
Confidence 7999999998764 2235689999985321 11100 12578999999999999998743
No 169
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=89.72 E-value=0.19 Score=42.99 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=39.1
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+.+. . .++++||+|+....-..-+ -...+++.+++.|+|||.++...
T Consensus 77 ~~~~~~~~d~~~~-~-~~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 77 PEATWVRAWGEAL-P-FPGESFDVVLLFTTLEFVE----DVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp TTSEEECCCTTSC-C-SCSSCEEEEEEESCTTTCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcEEEEcccccC-C-CCCCcEEEEEEcChhhhcC----CHHHHHHHHHHHcCCCCEEEEEe
Confidence 5788888887653 2 2346899999864321111 12579999999999999998754
No 170
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=89.71 E-value=0.22 Score=43.26 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=41.6
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccch
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM 225 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp 225 (334)
++++++.+|..... .++++||+|+....-..- . --..+++.+++.|+|||.++....++
T Consensus 89 ~~~~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~-~---~~~~~l~~~~~~L~pgG~l~~~~~~~ 147 (243)
T 3bkw_A 89 TGITYERADLDKLH--LPQDSFDLAYSSLALHYV-E---DVARLFRTVHQALSPGGHFVFSTEHP 147 (243)
T ss_dssp SSEEEEECCGGGCC--CCTTCEEEEEEESCGGGC-S---CHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCceEEEcChhhcc--CCCCCceEEEEecccccc-c---hHHHHHHHHHHhcCcCcEEEEEeCCc
Confidence 58999999987642 224689999975421101 1 12579999999999999999765443
No 171
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=89.70 E-value=0.27 Score=44.27 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=39.3
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCC-CCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS-DPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~-dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++++++.+|..+ .+ ++||+|+.-.. ...++ ---..+++.+++.|+|||.++.+.
T Consensus 113 ~~~~~~~~~d~~~----~~-~~fD~v~~~~~l~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 113 LRSKRVLLAGWEQ----FD-EPVDRIVSIGAFEHFGH---ERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp CSCEEEEESCGGG----CC-CCCSEEEEESCGGGTCT---TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCeEEEECChhh----CC-CCeeEEEEeCchhhcCh---HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4689999999754 33 67999996531 11111 012679999999999999999754
No 172
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=89.60 E-value=0.26 Score=42.91 Aligned_cols=58 Identities=19% Similarity=0.282 Sum_probs=41.0
Q ss_pred CCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 159 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
..++++++.+|+.+.- .++++||+|+.-..-..-+ -...+++.+++.|+|||+++...
T Consensus 96 ~~~~~~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 96 EGPDLSFIKGDLSSLP--FENEQFEAIMAINSLEWTE----EPLRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp CBTTEEEEECBTTBCS--SCTTCEEEEEEESCTTSSS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCceEEEcchhcCC--CCCCCccEEEEcChHhhcc----CHHHHHHHHHHHhCCCeEEEEEE
Confidence 3579999999987542 2346899999753211111 11479999999999999998744
No 173
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=89.57 E-value=0.21 Score=43.30 Aligned_cols=51 Identities=31% Similarity=0.449 Sum_probs=37.6
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.++++++.+|+...... ++.||+|+++..-+ + +.+.+.+.|+|||+++...
T Consensus 132 ~~~v~~~~~d~~~~~~~--~~~fD~i~~~~~~~-----~-----~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 132 SGRVQLVVGDGRMGYAE--EAPYDAIHVGAAAP-----V-----VPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp TSSEEEEESCGGGCCGG--GCCEEEEEECSBBS-----S-----CCHHHHHTEEEEEEEEEEE
T ss_pred CCcEEEEECCcccCccc--CCCcCEEEECCchH-----H-----HHHHHHHhcCCCcEEEEEE
Confidence 35899999998754322 35799999987432 2 3368899999999999754
No 174
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=89.48 E-value=0.21 Score=45.22 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=40.2
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCC-CCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS-DPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~-dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++++++.+|+.+. . .++++||+|+.-.. ..... -..+++.+++.|+|||.++...
T Consensus 131 ~~~~~~~~~d~~~~-~-~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 131 ADNITVKYGSFLEI-P-CEDNSYDFIWSQDAFLHSPD-----KLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp TTTEEEEECCTTSC-S-SCTTCEEEEEEESCGGGCSC-----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcceEEEEcCcccC-C-CCCCCEeEEEecchhhhcCC-----HHHHHHHHHHHcCCCeEEEEEE
Confidence 46899999997653 1 22468999997532 11111 2689999999999999998653
No 175
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=89.34 E-value=0.19 Score=44.57 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=38.5
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++++++.+|+... . .++++||+|+.-..-..-+ --..+++.+++.|+|||.++..
T Consensus 85 ~~v~~~~~d~~~l-~-~~~~~fD~V~~~~~l~~~~----d~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 85 QQVEYVQGDAEQM-P-FTDERFHIVTCRIAAHHFP----NPASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp CSEEEEECCC-CC-C-SCTTCEEEEEEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEEecHHhC-C-CCCCCEEEEEEhhhhHhcC----CHHHHHHHHHHHcCCCCEEEEE
Confidence 5899999997652 2 2346899999864311111 1147999999999999999864
No 176
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=89.30 E-value=0.18 Score=47.50 Aligned_cols=58 Identities=17% Similarity=0.237 Sum_probs=39.9
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCC-cCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPA-QELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa-~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
..++++.+|...+. +++||+|+.+.+=..+.. ..-....+++.+++.|+|||.++...
T Consensus 245 ~~~~~~~~d~~~~~----~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 245 VEGEVFASNVFSEV----KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (343)
T ss_dssp CCCEEEECSTTTTC----CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCEEEEccccccc----cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 34778999987653 357999999764221110 00012679999999999999998754
No 177
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=89.27 E-value=0.14 Score=45.06 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=40.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+..+. ++++||+|+....-..-+ --..+++.+++.|+|||.++...
T Consensus 78 ~~~~~~~~d~~~~~---~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 78 PNTNFGKADLATWK---PAQKADLLYANAVFQWVP----DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp TTSEEEECCTTTCC---CSSCEEEEEEESCGGGST----THHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCcEEEECChhhcC---ccCCcCEEEEeCchhhCC----CHHHHHHHHHHhcCCCeEEEEEe
Confidence 68999999987644 246899999854311111 12579999999999999999765
No 178
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=89.20 E-value=0.13 Score=44.23 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=39.9
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|..+. . .++++||+|+....-...... -..++++.+++.|+|||.++...
T Consensus 85 ~~~~~~~~d~~~~-~-~~~~~~D~v~~~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~ 142 (227)
T 1ve3_A 85 SNVEFIVGDARKL-S-FEDKTFDYVIFIDSIVHFEPL--ELNQVFKEVRRVLKPSGKFIMYF 142 (227)
T ss_dssp CCCEEEECCTTSC-C-SCTTCEEEEEEESCGGGCCHH--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEECchhcC-C-CCCCcEEEEEEcCchHhCCHH--HHHHHHHHHHHHcCCCcEEEEEe
Confidence 7899999997663 1 224689999986430011100 12579999999999999998754
No 179
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=88.83 E-value=0.46 Score=43.18 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=37.4
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
..+++++.+|..++ +.+.||+|++-..-..-+.. --..+++.+++.|+|||+++.
T Consensus 122 ~~~v~~~~~D~~~~----~~~~~d~v~~~~~l~~~~~~--~~~~~l~~i~~~LkpGG~lii 176 (261)
T 4gek_A 122 PTPVDVIEGDIRDI----AIENASMVVLNFTLQFLEPS--ERQALLDKIYQGLNPGGALVL 176 (261)
T ss_dssp SSCEEEEESCTTTC----CCCSEEEEEEESCGGGSCHH--HHHHHHHHHHHHEEEEEEEEE
T ss_pred CceEEEeecccccc----cccccccceeeeeeeecCch--hHhHHHHHHHHHcCCCcEEEE
Confidence 45899999997553 33579999874431111100 013589999999999999986
No 180
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=88.73 E-value=0.2 Score=44.07 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=40.0
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.++++++.+|+...- .++++||+|++...-..-+ -...+++.+++.|+|||.++..
T Consensus 85 ~~~~~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 85 DRKVQVVQADARAIP--LPDESVHGVIVVHLWHLVP----DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CTTEEEEESCTTSCC--SCTTCEEEEEEESCGGGCT----THHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceEEEEcccccCC--CCCCCeeEEEECCchhhcC----CHHHHHHHHHHHCCCCcEEEEE
Confidence 478999999986532 2346899999854311111 1267999999999999999864
No 181
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=88.48 E-value=0.43 Score=43.77 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=39.2
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCC-CCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS-DPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~-dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++++++.+|..++ + ++||+|+.... .-.+. -.-.++++.+.+.|+|||.++.+.
T Consensus 139 ~~~v~~~~~d~~~~----~-~~fD~v~~~~~l~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 139 NRSRQVLLQGWEDF----A-EPVDRIVSIEAFEHFGH---ENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp SSCEEEEESCGGGC----C-CCCSEEEEESCGGGTCG---GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCceEEEECChHHC----C-CCcCEEEEeChHHhcCH---HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 46899999997543 3 57999997532 11110 022679999999999999999754
No 182
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=88.46 E-value=0.21 Score=46.06 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=40.4
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++++++.+|+.+.- .++++||+|+.-.. ..++--..+++.+++.|+|||.++...
T Consensus 166 ~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~-----l~~~~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 166 DDHVRSRVCNMLDTP--FDKGAVTASWNNES-----TMYVDLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp TTTEEEEECCTTSCC--CCTTCEEEEEEESC-----GGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEEECChhcCC--CCCCCEeEEEECCc-----hhhCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 368999999986531 22468999997422 111115789999999999999998644
No 183
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=88.46 E-value=0.27 Score=41.70 Aligned_cols=55 Identities=15% Similarity=0.366 Sum_probs=38.0
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.+++++.+|....- .++++||+|+.-.. .. +. --...+++.+++.|+|||.++..
T Consensus 76 ~~~~~~~~d~~~~~--~~~~~fD~v~~~~~-~~-~~--~~~~~~l~~~~~~L~pgG~l~~~ 130 (202)
T 2kw5_A 76 VKITTVQSNLADFD--IVADAWEGIVSIFC-HL-PS--SLRQQLYPKVYQGLKPGGVFILE 130 (202)
T ss_dssp CCEEEECCBTTTBS--CCTTTCSEEEEECC-CC-CH--HHHHHHHHHHHTTCCSSEEEEEE
T ss_pred CceEEEEcChhhcC--CCcCCccEEEEEhh-cC-CH--HHHHHHHHHHHHhcCCCcEEEEE
Confidence 38899999976642 22468999998321 11 00 01257899999999999999864
No 184
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=88.41 E-value=0.19 Score=45.67 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=41.0
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
++++++.+|+.++-. +++||+|++...-..-+ -...+++.+++.|+|||.++....
T Consensus 72 ~~v~~~~~d~~~~~~---~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 127 (284)
T 3gu3_A 72 YDSEFLEGDATEIEL---NDKYDIAICHAFLLHMT----TPETMLQKMIHSVKKGGKIICFEP 127 (284)
T ss_dssp SEEEEEESCTTTCCC---SSCEEEEEEESCGGGCS----SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CceEEEEcchhhcCc---CCCeeEEEECChhhcCC----CHHHHHHHHHHHcCCCCEEEEEec
Confidence 489999999887432 35899999876421111 115899999999999999996543
No 185
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=88.38 E-value=0.22 Score=43.54 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=39.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.+++++.+|+.++. .+++||+|+.-..-..-+. ---..+++.+++.|+|||.++..
T Consensus 115 ~~v~~~~~d~~~~~---~~~~fD~v~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~~~ 170 (235)
T 3lcc_A 115 EYFSFVKEDVFTWR---PTELFDLIFDYVFFCAIEP--EMRPAWAKSMYELLKPDGELITL 170 (235)
T ss_dssp GGEEEECCCTTTCC---CSSCEEEEEEESSTTTSCG--GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred cceEEEECchhcCC---CCCCeeEEEEChhhhcCCH--HHHHHHHHHHHHHCCCCcEEEEE
Confidence 58999999988743 2358999997432111110 02257999999999999999863
No 186
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=88.15 E-value=0.1 Score=46.94 Aligned_cols=63 Identities=21% Similarity=0.111 Sum_probs=41.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
.+++++.+|+.+.--. .+++||+|++...-.......--...+++.+++.|+|||.++....+
T Consensus 114 ~~v~~~~~d~~~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 114 FKVFFRAQDSYGRHMD-LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp SEEEEEESCTTTSCCC-CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccEEEEECCccccccC-CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 5899999998764211 24689999987531100000001257999999999999999975533
No 187
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=88.11 E-value=0.14 Score=44.69 Aligned_cols=58 Identities=28% Similarity=0.264 Sum_probs=40.5
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCC----CHHHHHHHHHhcCCCcEEEEeccch
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELV----EKPFFDTIAKALRPGGVLCNMAESM 225 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~----t~eFy~~v~~~L~~gGilv~q~~sp 225 (334)
++++++.+|..++- . .++||+|++... ...++. ...+++.+++.|+|||+++....++
T Consensus 79 ~~~~~~~~d~~~~~--~-~~~fD~v~~~~~----~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 140 (243)
T 3d2l_A 79 RHVDFWVQDMRELE--L-PEPVDAITILCD----SLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSP 140 (243)
T ss_dssp CCCEEEECCGGGCC--C-SSCEEEEEECTT----GGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CceEEEEcChhhcC--C-CCCcCEEEEeCC----chhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence 68999999987642 2 257999998531 011221 2468899999999999999855443
No 188
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=88.08 E-value=0.048 Score=48.03 Aligned_cols=52 Identities=15% Similarity=0.065 Sum_probs=36.8
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCC-CCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV-GPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~-gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
++++++.+|+.++.. +++||+|++|.+-.. ..... .+..+++.|+|||+++.
T Consensus 127 ~~~~~~~~d~~~~~~---~~~~D~v~~~~~~~~~~~~~~-----~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 127 DKIEFICGDFLLLAS---FLKADVVFLSPPWGGPDYATA-----ETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp GGEEEEESCHHHHGG---GCCCSEEEECCCCSSGGGGGS-----SSBCTTTSCSSCHHHHH
T ss_pred cCeEEEECChHHhcc---cCCCCEEEECCCcCCcchhhh-----HHHHHHhhcCCcceeHH
Confidence 589999999999873 357999999864211 11111 33467889999999765
No 189
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=88.07 E-value=0.32 Score=43.75 Aligned_cols=55 Identities=24% Similarity=0.353 Sum_probs=39.0
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+..+ . . +++||+|+....-..-+ -...+++.+++.|+|||.++...
T Consensus 100 ~~~~~~~~d~~~~-~-~-~~~fD~v~~~~~l~~~~----d~~~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 100 PHLHFDVADARNF-R-V-DKPLDAVFSNAMLHWVK----EPEAAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp TTSCEEECCTTTC-C-C-SSCEEEEEEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEECChhhC-C-c-CCCcCEEEEcchhhhCc----CHHHHHHHHHHhcCCCcEEEEEe
Confidence 5788999998763 2 2 36899999854211101 12479999999999999998754
No 190
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=87.92 E-value=0.1 Score=46.54 Aligned_cols=54 Identities=24% Similarity=0.342 Sum_probs=38.9
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCC----CHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELV----EKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~----t~eFy~~v~~~L~~gGilv~q 221 (334)
++++++.+|+.++-. +++||+|++... ...++. -..+++.+++.|+|||+++..
T Consensus 93 ~~~~~~~~d~~~~~~---~~~fD~v~~~~~----~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 93 PDAVLHHGDMRDFSL---GRRFSAVTCMFS----SIGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp TTSEEEECCTTTCCC---SCCEEEEEECTT----GGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCEEEECChHHCCc---cCCcCEEEEcCc----hhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 378999999876432 368999998541 111221 246899999999999999984
No 191
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=87.85 E-value=0.29 Score=45.89 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=39.9
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.++++++.+|+.++- .+.++||+||.+...-... ..-.-..++..+.+.|+|||+++.
T Consensus 86 ~~~i~~~~~d~~~~~--~~~~~~D~Ivs~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 86 SDKITLLRGKLEDVH--LPFPKVDIIISEWMGYFLL-YESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTTEEEEESCTTTSC--CSSSCEEEEEECCCBTTBS-TTCCHHHHHHHHHHHEEEEEEEES
T ss_pred CCCEEEEECchhhcc--CCCCcccEEEEeCchhhcc-cHHHHHHHHHHHHhhcCCCeEEEE
Confidence 468999999987642 2236899999975421111 111224688899999999999984
No 192
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=87.79 E-value=0.38 Score=43.55 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=54.1
Q ss_pred CCCCeEEEEchHHHHHhh-CCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe--ccchh---hhhhHH
Q 019882 159 EDPRVRLHIGDAVEFLRQ-VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM--AESMW---LHTHLI 232 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~-~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q--~~sp~---~~~~~~ 232 (334)
+.+++..+.+|+...-.. ...+.+|+|+.|...|.. ...++..+++.|||||.++.- ..+.- .....+
T Consensus 124 ~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~~------~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~ 197 (233)
T 4df3_A 124 DRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQ------AAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVY 197 (233)
T ss_dssp TCTTEEEEESCTTCGGGGTTTCCCEEEEEECCCCTTH------HHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHH
T ss_pred hhcCeeEEEEeccCccccccccceEEEEEEeccCChh------HHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHH
Confidence 347899999998753321 124689999999876542 246899999999999998852 22221 123456
Q ss_pred HHHHHHHHHh-cC
Q 019882 233 EDMISICRET-FK 244 (334)
Q Consensus 233 ~~i~~tl~~v-F~ 244 (334)
+...+.|++. |.
T Consensus 198 ~~ev~~L~~~GF~ 210 (233)
T 4df3_A 198 KREIKTLMDGGLE 210 (233)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCE
Confidence 6677777765 76
No 193
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=87.71 E-value=0.33 Score=42.15 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=36.2
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++++.+|+.+.+.. +++||+|+++..-+ ++ .+.+.+.|+|||+++...
T Consensus 117 ~v~~~~~d~~~~~~~--~~~fD~v~~~~~~~-----~~-----~~~~~~~L~pgG~l~~~~ 165 (231)
T 1vbf_A 117 NIKLILGDGTLGYEE--EKPYDRVVVWATAP-----TL-----LCKPYEQLKEGGIMILPI 165 (231)
T ss_dssp SEEEEESCGGGCCGG--GCCEEEEEESSBBS-----SC-----CHHHHHTEEEEEEEEEEE
T ss_pred CeEEEECCccccccc--CCCccEEEECCcHH-----HH-----HHHHHHHcCCCcEEEEEE
Confidence 899999998774332 35799999986422 21 146889999999998754
No 194
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=87.70 E-value=0.23 Score=44.82 Aligned_cols=54 Identities=11% Similarity=-0.006 Sum_probs=38.2
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+++++.+|+..... +++||+|+....-..-+ .-....+++.+++.|+|||+++.
T Consensus 168 ~~~~~~~d~~~~~~---~~~fD~i~~~~~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i 221 (286)
T 3m70_A 168 NISTALYDINAANI---QENYDFIVSTVVFMFLN--RERVPSIIKNMKEHTNVGGYNLI 221 (286)
T ss_dssp CEEEEECCGGGCCC---CSCEEEEEECSSGGGSC--GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred ceEEEEeccccccc---cCCccEEEEccchhhCC--HHHHHHHHHHHHHhcCCCcEEEE
Confidence 89999999876433 46899999865311100 01124799999999999999765
No 195
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=87.68 E-value=0.26 Score=44.88 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=40.9
Q ss_pred CCCeEEEEchHHHHHhhC----CCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQV----PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~----~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.++++++.+|+.+.-... ..++||+|+....- .++--..+++.+++.|+|||.++.
T Consensus 88 ~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l-----~~~~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 88 YKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECA-----HWFDFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp CTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCG-----GGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred CCceEEEEcCHHhCCccccccccCCCeeEEeHhhHH-----HHhCHHHHHHHHHHhcCCCcEEEE
Confidence 579999999987643221 01589999986431 122346799999999999999986
No 196
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=87.56 E-value=0.25 Score=46.74 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=39.7
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.++++++.+|..++ .. .++||+||.+...-..... -..+++..+++.|+|||+++.+.
T Consensus 98 ~~~v~~~~~d~~~~--~~-~~~~D~Ivs~~~~~~~~~~--~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 98 TDRIVVIPGKVEEV--SL-PEQVDIIISEPMGYMLFNE--RMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp TTTEEEEESCTTTC--CC-SSCEEEEEECCCBTTBTTT--SHHHHHHHGGGGEEEEEEEESCE
T ss_pred CCcEEEEEcchhhC--CC-CCceeEEEEeCchhcCChH--HHHHHHHHHHhhcCCCeEEEEec
Confidence 36899999997764 22 2579999997542111100 12467888899999999998544
No 197
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=87.54 E-value=0.32 Score=44.57 Aligned_cols=62 Identities=26% Similarity=0.278 Sum_probs=39.9
Q ss_pred CCeEEEEchHHH---HHhhCCCCceeEEEECCCCCCCC-C-cCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVE---FLRQVPRGKYDAIIVDSSDPVGP-A-QELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~---fL~~~~~~~yDvIIvD~~dp~gp-a-~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+++++.+|... .+.....++||+|++-..-..-. . ..---..+++.+++.|+|||+++...
T Consensus 154 ~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 154 NNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp TTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 489999999762 22222356899999855310000 0 00012568999999999999999853
No 198
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=87.35 E-value=0.31 Score=42.72 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=39.6
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCC---CHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELV---EKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~---t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|.... . .++++||+|+.-.. ..++- -..+++.+++.|+|||+++...
T Consensus 140 ~~~~~~~~d~~~~-~-~~~~~fD~v~~~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 197 (254)
T 1xtp_A 140 PVGKFILASMETA-T-LPPNTYDLIVIQWT-----AIYLTDADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp SEEEEEESCGGGC-C-CCSSCEEEEEEESC-----GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceEEEEccHHHC-C-CCCCCeEEEEEcch-----hhhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 7899999998763 2 23468999997432 11221 2578999999999999998643
No 199
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=87.18 E-value=0.3 Score=42.98 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=39.0
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++++++.+|+... . .++++||+|+....-..-+ --..+++.+++.|+|||.++..
T Consensus 69 ~~v~~~~~d~~~~-~-~~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~ 123 (239)
T 1xxl_A 69 ENVRFQQGTAESL-P-FPDDSFDIITCRYAAHHFS----DVRKAVREVARVLKQDGRFLLV 123 (239)
T ss_dssp CSEEEEECBTTBC-C-SCTTCEEEEEEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeEEEecccccC-C-CCCCcEEEEEECCchhhcc----CHHHHHHHHHHHcCCCcEEEEE
Confidence 5799999997552 2 2346899999874311111 1257999999999999999864
No 200
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=86.79 E-value=0.72 Score=43.91 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=38.5
Q ss_pred CCeEEEEchHHHHHhhCCC--------------CceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchh
Q 019882 161 PRVRLHIGDAVEFLRQVPR--------------GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMW 226 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~--------------~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~ 226 (334)
++++++.+|+.+++....+ .+||+||+|.+.. + ....+.+.|+++|.++.-+.+|.
T Consensus 261 ~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~-g---------~~~~~~~~l~~~g~ivyvsc~p~ 330 (369)
T 3bt7_A 261 DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS-G---------LDSETEKMVQAYPRILYISCNPE 330 (369)
T ss_dssp CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT-C---------CCHHHHHHHTTSSEEEEEESCHH
T ss_pred CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcc-c---------cHHHHHHHHhCCCEEEEEECCHH
Confidence 4899999999998864321 2799999997532 1 12345566778888886555554
No 201
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=86.53 E-value=0.43 Score=41.87 Aligned_cols=52 Identities=27% Similarity=0.431 Sum_probs=35.8
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
++++++.+|+..-+.. ...||+||++..-+. + .+.+.+.|+|||+++....+
T Consensus 140 ~~v~~~~~d~~~~~~~--~~~fD~Ii~~~~~~~-----~-----~~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 140 KNVHVILGDGSKGFPP--KAPYDVIIVTAGAPK-----I-----PEPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CSEEEEESCGGGCCGG--GCCEEEEEECSBBSS-----C-----CHHHHHTEEEEEEEEEEECS
T ss_pred CCcEEEECCcccCCCC--CCCccEEEECCcHHH-----H-----HHHHHHhcCCCcEEEEEEec
Confidence 4599999998332322 235999999864321 1 14788999999999986543
No 202
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=86.43 E-value=0.24 Score=42.37 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=36.9
Q ss_pred EEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 164 RLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 164 ~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
+++.+|+..+....++++||+|+....-..-+ -..++++.+++.|+|||.++....
T Consensus 76 ~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 76 HVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF----DPWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp EEEESCTTTCCCCSCTTCEEEEEEESCGGGSS----CHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred cEEEcchhhcCCCCCCCccCEEEECChhhhcC----CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 67778876542222346899999753211001 115799999999999999997553
No 203
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=86.13 E-value=0.17 Score=43.96 Aligned_cols=54 Identities=30% Similarity=0.441 Sum_probs=38.0
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCC----HHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE----KPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t----~eFy~~v~~~L~~gGilv~q 221 (334)
++++++.+|..++- . +++||+|++-.. ...++.+ ..+++.+++.|+|||.++..
T Consensus 83 ~~~~~~~~d~~~~~--~-~~~~D~v~~~~~----~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 83 PDATLHQGDMRDFR--L-GRKFSAVVSMFS----SVGYLKTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp TTCEEEECCTTTCC--C-SSCEEEEEECTT----GGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCEEEECCHHHcc--c-CCCCcEEEEcCc----hHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 57899999987642 2 357999995221 1112222 57899999999999999974
No 204
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=85.75 E-value=0.94 Score=37.82 Aligned_cols=77 Identities=12% Similarity=0.155 Sum_probs=46.8
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCC-CCCCC----cCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHH
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGPA----QELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIED 234 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d-p~gpa----~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~ 234 (334)
.++++++.+|+.+.+. +++||+|+.+.+= +.... ..--..++++.+.+.| |||.++....+. . ....
T Consensus 60 ~~~~~~~~~d~~~~~~---~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-~---~~~~ 131 (170)
T 3q87_B 60 HRGGNLVRADLLCSIN---QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-N---RPKE 131 (170)
T ss_dssp CSSSCEEECSTTTTBC---GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-G---CHHH
T ss_pred ccCCeEEECChhhhcc---cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC-C---CHHH
Confidence 4689999999887543 2589999996431 10000 0011256889999999 999998744222 1 2334
Q ss_pred HHHHHHHh-cC
Q 019882 235 MISICRET-FK 244 (334)
Q Consensus 235 i~~tl~~v-F~ 244 (334)
+.+.+++. |.
T Consensus 132 l~~~l~~~gf~ 142 (170)
T 3q87_B 132 VLARLEERGYG 142 (170)
T ss_dssp HHHHHHHTTCE
T ss_pred HHHHHHHCCCc
Confidence 44555553 55
No 205
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=85.41 E-value=2.7 Score=35.50 Aligned_cols=51 Identities=22% Similarity=0.434 Sum_probs=37.7
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
+++++.+|+.++ + .+||+||+|.+ .+....--...|++.+.+.| ||+++.+
T Consensus 98 ~~~~~~~d~~~~----~-~~~D~v~~~~p--~~~~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 98 KFKVFIGDVSEF----N-SRVDIVIMNPP--FGSQRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp SEEEEESCGGGC----C-CCCSEEEECCC--CSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred CEEEEECchHHc----C-CCCCEEEEcCC--CccccCCchHHHHHHHHHhc--CcEEEEE
Confidence 799999998773 2 47999999874 22222234578999999998 7887765
No 206
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=85.37 E-value=0.85 Score=41.87 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=40.8
Q ss_pred CCeEEEEchHHHHHhhCCCCce---eEEEECCCC-CCCC---CcCCC-----------CHHHHHHHH-HhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKY---DAIIVDSSD-PVGP---AQELV-----------EKPFFDTIA-KALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~y---DvIIvD~~d-p~gp---a~~L~-----------t~eFy~~v~-~~L~~gGilv~q 221 (334)
.|++++.+|..+.+. ++| |+|+.+.+= +... +.-++ ..+||+.+. +.|+|||+++..
T Consensus 173 ~~v~~~~~D~~~~~~----~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 173 DRFFVRKGEFLEPFK----EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp TSEEEEESSTTGGGG----GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred CceEEEECcchhhcc----cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 479999999988664 368 999998431 1000 00011 127999999 999999999975
Q ss_pred cc
Q 019882 222 AE 223 (334)
Q Consensus 222 ~~ 223 (334)
.+
T Consensus 249 ~~ 250 (284)
T 1nv8_A 249 IG 250 (284)
T ss_dssp CC
T ss_pred EC
Confidence 43
No 207
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=85.36 E-value=0.41 Score=40.57 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=38.7
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCC---CCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQEL---VEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L---~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+.+. . .++++||+|+.... ..++ -...+++.+++.|+|||+++...
T Consensus 71 ~~~~~~~~d~~~~-~-~~~~~fD~v~~~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 71 FKLNISKGDIRKL-P-FKDESMSFVYSYGT-----IFHMRKNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp CCCCEEECCTTSC-C-SCTTCEEEEEECSC-----GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceEEEECchhhC-C-CCCCceeEEEEcCh-----HHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5788999998653 1 22468999997532 1111 13578999999999999998643
No 208
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=85.31 E-value=0.18 Score=43.11 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=37.5
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++++.+|...++ +++||+|+.+..-. . ...+++.+++.|+|||.++..
T Consensus 111 v~~~~~d~~~~~----~~~fD~i~~~~~~~-----~--~~~~l~~~~~~L~~gG~l~~~ 158 (205)
T 3grz_A 111 IALQKTSLLADV----DGKFDLIVANILAE-----I--LLDLIPQLDSHLNEDGQVIFS 158 (205)
T ss_dssp CEEEESSTTTTC----CSCEEEEEEESCHH-----H--HHHHGGGSGGGEEEEEEEEEE
T ss_pred eEEEeccccccC----CCCceEEEECCcHH-----H--HHHHHHHHHHhcCCCCEEEEE
Confidence 999999987653 36799999975321 1 267889999999999999874
No 209
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=84.66 E-value=0.2 Score=43.43 Aligned_cols=60 Identities=23% Similarity=0.251 Sum_probs=40.2
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECC-CCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccch
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDS-SDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM 225 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~-~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp 225 (334)
+++++.+|..++. .+ ++||+||+.. .=..-+ ..---..+++.+++.|+|||+++....++
T Consensus 85 ~~~~~~~d~~~~~--~~-~~fD~v~~~~~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 85 KPRLACQDISNLN--IN-RKFDLITCCLDSTNYII-DSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp CCEEECCCGGGCC--CS-CCEEEEEECTTGGGGCC-SHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CeEEEecccccCC--cc-CCceEEEEcCccccccC-CHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 8999999987642 22 5799999853 111000 00012578999999999999999855443
No 210
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=84.61 E-value=0.49 Score=41.43 Aligned_cols=59 Identities=8% Similarity=0.007 Sum_probs=39.2
Q ss_pred CCCeEEEEchHHHHHhhC---CCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQV---PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~---~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.++++++.+|..+.-... .+..||+|+....-..-+.. --..+++.+++.|+|||.++.
T Consensus 100 ~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i 161 (245)
T 3ggd_A 100 AANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVE--KRELLGQSLRILLGKQGAMYL 161 (245)
T ss_dssp CTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGG--GHHHHHHHHHHHHTTTCEEEE
T ss_pred ccCceEEECcccccccccccccccCccEEEEcchhhcCCHH--HHHHHHHHHHHHcCCCCEEEE
Confidence 458999999987643221 01249999987643222111 125799999999999998664
No 211
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=84.34 E-value=0.84 Score=42.35 Aligned_cols=60 Identities=10% Similarity=0.075 Sum_probs=36.5
Q ss_pred eEEEEchH----H-HHHh-hCCCCceeEEEECCCCCCC-CCcCCCCHHHHHHHHHhcCCCcEEEEeccc
Q 019882 163 VRLHIGDA----V-EFLR-QVPRGKYDAIIVDSSDPVG-PAQELVEKPFFDTIAKALRPGGVLCNMAES 224 (334)
Q Consensus 163 v~viv~Dg----~-~fL~-~~~~~~yDvIIvD~~dp~g-pa~~L~t~eFy~~v~~~L~~gGilv~q~~s 224 (334)
++.+++|. . .-|. ..++++||+|++-..=... ...+. ..+++.++++|+|||+++....+
T Consensus 105 ~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~--~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 105 FDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHY--ATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp EEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTH--HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHH--HHHHHHHHHHcCCCCEEEEEeCC
Confidence 56666665 2 2232 2234689999864310000 01122 68999999999999999975533
No 212
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=84.04 E-value=1.3 Score=40.22 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=36.4
Q ss_pred CeEEEEchHHHHHhh----CCCCceeEEEECCCCCCCCCcCCC-CHHHHHHHHHhcCCCcEEEEec
Q 019882 162 RVRLHIGDAVEFLRQ----VPRGKYDAIIVDSSDPVGPAQELV-EKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~----~~~~~yDvIIvD~~dp~gpa~~L~-t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++.+..+|+-.+... .++++||+|+.=..=. ++- -..+++.+++.|+|||.++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~-----~~~d~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 112 KFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLY-----YVKDIPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp EEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGG-----GCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eEEEEecchhhhhhhhccccCCCceeEEEEeeeee-----ecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 445556677665531 2246899999743211 111 1459999999999999998753
No 213
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=83.62 E-value=0.24 Score=45.56 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=39.7
Q ss_pred CCeEEEEchHHHHH-----hhCCCCceeEEEECCCCCCCCCcCC-CCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFL-----RQVPRGKYDAIIVDSSDPVGPAQEL-VEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL-----~~~~~~~yDvIIvD~~dp~gpa~~L-~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+++++.+|+.... .. ++++||+|++-..-.... ..+ --..+++.+++.|+|||+++...
T Consensus 90 ~~~~~~~~D~~~~~~~~~~~~-~~~~fD~V~~~~~l~~~~-~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (313)
T 3bgv_A 90 FSAEFITADSSKELLIDKFRD-PQMCFDICSCQFVCHYSF-ESYEQADMMLRNACERLSPGGYFIGTT 155 (313)
T ss_dssp CEEEEEECCTTTSCSTTTCSS-TTCCEEEEEEETCGGGGG-GSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ceEEEEEecccccchhhhccc-CCCCEEEEEEecchhhcc-CCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 57999999987652 11 134899999854211100 000 11479999999999999999754
No 214
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=83.55 E-value=0.28 Score=43.76 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=35.8
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
++++++.+|+... . .++++||+|+.-.. ..+++.+.+.|+|||.++....
T Consensus 130 ~~~~~~~~d~~~~-~-~~~~~fD~v~~~~~-----------~~~l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 130 PQVTFCVASSHRL-P-FSDTSMDAIIRIYA-----------PCKAEELARVVKPGGWVITATP 179 (269)
T ss_dssp TTSEEEECCTTSC-S-BCTTCEEEEEEESC-----------CCCHHHHHHHEEEEEEEEEEEE
T ss_pred CCcEEEEcchhhC-C-CCCCceeEEEEeCC-----------hhhHHHHHHhcCCCcEEEEEEc
Confidence 5678888887542 2 22468999996322 1268999999999999987543
No 215
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=83.31 E-value=0.53 Score=40.69 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=37.6
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++++.+|+... . .++++||+|+....-..-+ -...+++.+++.|+|||.++...
T Consensus 85 ~~~~~~~d~~~~-~-~~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~ 139 (219)
T 1vlm_A 85 GVFVLKGTAENL-P-LKDESFDFALMVTTICFVD----DPERALKEAYRILKKGGYLIVGI 139 (219)
T ss_dssp TCEEEECBTTBC-C-SCTTCEEEEEEESCGGGSS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEEcccccC-C-CCCCCeeEEEEcchHhhcc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 678888887543 2 2246899999864211001 12579999999999999998643
No 216
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=81.75 E-value=1.5 Score=40.98 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=36.4
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.+|++++.+|.. ...+ .||+|++-..=..-+. ---..+++.++++|+|||.++.
T Consensus 231 ~~~v~~~~~d~~---~~~p--~~D~v~~~~vlh~~~d--~~~~~~L~~~~~~LkpgG~l~i 284 (348)
T 3lst_A 231 AGRWKVVEGDFL---REVP--HADVHVLKRILHNWGD--EDSVRILTNCRRVMPAHGRVLV 284 (348)
T ss_dssp TTSEEEEECCTT---TCCC--CCSEEEEESCGGGSCH--HHHHHHHHHHHHTCCTTCEEEE
T ss_pred CCCeEEEecCCC---CCCC--CCcEEEEehhccCCCH--HHHHHHHHHHHHhcCCCCEEEE
Confidence 468999999976 3333 7999997432100000 0013699999999999999986
No 217
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=81.74 E-value=0.56 Score=41.15 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=39.1
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+++++.+|..+.- . .++||+|++.......... ---..+++.+++.|+|||+++...
T Consensus 88 ~~v~~~~~d~~~~~--~-~~~fD~v~~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 88 LKIEFLQGDVLEIA--F-KNEFDAVTMFFSTIMYFDE-EDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp CCCEEEESCGGGCC--C-CSCEEEEEECSSGGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceEEEECChhhcc--c-CCCccEEEEcCCchhcCCH-HHHHHHHHHHHHHcCCCeEEEEec
Confidence 47999999987742 2 3579999975321111000 012568999999999999999754
No 218
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=81.65 E-value=1.8 Score=40.26 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCceeEEEECCCCCCCCC--cCCCCHHHHHHHHHhcCCC-cEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEee
Q 019882 179 RGKYDAIIVDSSDPVGPA--QELVEKPFFDTIAKALRPG-GVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVP 255 (334)
Q Consensus 179 ~~~yDvIIvD~~dp~gpa--~~L~t~eFy~~v~~~L~~g-Gilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vP 255 (334)
++.||+|+.|..-..|.. .+.-+.+-++.+.+.|+|| |.+|+-.-.|+ ...+..+++.++..|. .|.. .-|
T Consensus 138 ~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~py--g~~~~~l~~~lk~~F~-~V~~---~KP 211 (277)
T 3evf_A 138 PVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPY--MPDVLEKLELLQRRFG-GTVI---RNP 211 (277)
T ss_dssp CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTT--SHHHHHHHHHHHHHHC-CEEE---CCT
T ss_pred CCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCC--CccHHHHHHHHHHhcC-CEEE---EeC
Confidence 468999999975333321 1111112256778999999 99998443333 2346788899999999 5543 456
Q ss_pred ecCC---CcEEEEEeecCCC
Q 019882 256 TYPS---GIIGFLICSTEGP 272 (334)
Q Consensus 256 syp~---g~w~f~laSk~~~ 272 (334)
. | ..-.|++|-...+
T Consensus 212 -a-SR~~S~E~Y~V~~~r~n 229 (277)
T 3evf_A 212 -L-SRNSTHEMYYVSGARSN 229 (277)
T ss_dssp -T-SCTTCCCEEEESSCCCC
T ss_pred -C-CCCCCCceEEEEecCCC
Confidence 2 2 1236788766543
No 219
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=81.48 E-value=0.84 Score=42.27 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=36.8
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCC----HHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE----KPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t----~eFy~~v~~~L~~gGilv~q 221 (334)
.+|++++.+|.. ...+ ..||+|++-.. -+-+. ..+++.++++|+|||.++..
T Consensus 218 ~~~v~~~~~d~~---~~~p-~~~D~v~~~~v------lh~~~~~~~~~~l~~~~~~L~pgG~l~i~ 273 (332)
T 3i53_A 218 SGRAQVVVGSFF---DPLP-AGAGGYVLSAV------LHDWDDLSAVAILRRCAEAAGSGGVVLVI 273 (332)
T ss_dssp TTTEEEEECCTT---SCCC-CSCSEEEEESC------GGGSCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CcCeEEecCCCC---CCCC-CCCcEEEEehh------hccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 378999999976 2333 37999997321 11111 46999999999999999863
No 220
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=81.04 E-value=0.89 Score=43.99 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=40.8
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+.+++++.+|..+. .. .+++|+||.+..+-....+. .-..+.....+.|+|||+++-
T Consensus 131 ~~~i~~i~~~~~~~--~l-pe~~DvivsE~~~~~l~~e~-~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 131 EDRVHVLPGPVETV--EL-PEQVDAIVSEWMGYGLLHES-MLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TTTEEEEESCTTTC--CC-SSCEEEEECCCCBTTBTTTC-SHHHHHHHHHHHEEEEEEEES
T ss_pred CceEEEEeeeeeee--cC-CccccEEEeecccccccccc-hhhhHHHHHHhhCCCCceECC
Confidence 47999999997664 23 36899999977643222222 235677788899999999973
No 221
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=80.89 E-value=0.97 Score=41.74 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=37.8
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++|++++.+|..+ ..+ +.||+|++-..=...+.. -...+++.++++|+|||.++..
T Consensus 216 ~~~v~~~~~d~~~---~~~-~~~D~v~~~~vl~~~~~~--~~~~~l~~~~~~L~pgG~l~i~ 271 (334)
T 2ip2_A 216 GERVSLVGGDMLQ---EVP-SNGDIYLLSRIIGDLDEA--ASLRLLGNCREAMAGDGRVVVI 271 (334)
T ss_dssp TTSEEEEESCTTT---CCC-SSCSEEEEESCGGGCCHH--HHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCcEEEecCCCCC---CCC-CCCCEEEEchhccCCCHH--HHHHHHHHHHHhcCCCCEEEEE
Confidence 3689999999765 233 579999974321100100 0137899999999999998763
No 222
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=80.80 E-value=0.58 Score=40.36 Aligned_cols=54 Identities=9% Similarity=0.168 Sum_probs=34.7
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECC-CCCCCCCcCCCCHHHHHHHHHhcCCCcE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDS-SDPVGPAQELVEKPFFDTIAKALRPGGV 217 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~-~dp~gpa~~L~t~eFy~~v~~~L~~gGi 217 (334)
.++++++.+|+.+.-... .++||+|+.-. .....+. -...+++.+++.|+|||.
T Consensus 81 ~~~v~~~~~d~~~l~~~~-~~~fD~v~~~~~l~~l~~~---~~~~~l~~~~r~LkpgG~ 135 (203)
T 1pjz_A 81 APGIEIWCGDFFALTARD-IGHCAAFYDRAAMIALPAD---MRERYVQHLEALMPQACS 135 (203)
T ss_dssp CSSSEEEEECCSSSTHHH-HHSEEEEEEESCGGGSCHH---HHHHHHHHHHHHSCSEEE
T ss_pred CCccEEEECccccCCccc-CCCEEEEEECcchhhCCHH---HHHHHHHHHHHHcCCCcE
Confidence 468999999987643211 14799998522 1110000 013589999999999997
No 223
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=79.95 E-value=5 Score=36.37 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=40.0
Q ss_pred CCCeEEEEchHHHH--H-------hhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEF--L-------RQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~f--L-------~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
.++++++.+|..+. + ......+||+|++-..=..-+ .. --...++.++++|+|||.++...
T Consensus 127 ~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~-d~-~~~~~l~~~~~~L~pGG~l~i~~ 196 (274)
T 2qe6_A 127 DPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLS-PD-VVDRVVGAYRDALAPGSYLFMTS 196 (274)
T ss_dssp CTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSC-TT-THHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCC-cH-HHHHHHHHHHHhCCCCcEEEEEE
Confidence 47899999998642 2 122224799998754211111 11 12579999999999999998643
No 224
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=79.71 E-value=3.9 Score=34.39 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=34.2
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
+++++.+|+.++ + ++||+||+|.+ ......-...+|++.+.+.| |++++..
T Consensus 96 ~~~~~~~d~~~~----~-~~~D~v~~~~p--~~~~~~~~~~~~l~~~~~~~--g~~~~~~ 146 (200)
T 1ne2_A 96 GVNFMVADVSEI----S-GKYDTWIMNPP--FGSVVKHSDRAFIDKAFETS--MWIYSIG 146 (200)
T ss_dssp TSEEEECCGGGC----C-CCEEEEEECCC--C-------CHHHHHHHHHHE--EEEEEEE
T ss_pred CCEEEECcHHHC----C-CCeeEEEECCC--chhccCchhHHHHHHHHHhc--CcEEEEE
Confidence 799999998773 2 57999999864 22111123468999999999 6666653
No 225
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=79.02 E-value=0.98 Score=40.60 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=41.1
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
.+++++.+|+++-+... ++||+|++- |....+ -.++++.+.+.|+++|.++.|.-
T Consensus 66 ~~i~~~~~d~l~~l~~~--~~~D~Ivia-----G~Gg~~-i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 66 EKIQVRLANGLAAFEET--DQVSVITIA-----GMGGRL-IARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp TTEEEEECSGGGGCCGG--GCCCEEEEE-----EECHHH-HHHHHHHTGGGCTTCCEEEEEES
T ss_pred ceEEEEECchhhhcccC--cCCCEEEEc-----CCChHH-HHHHHHHHHHHhCCCCEEEEECC
Confidence 59999999998876532 369998872 222222 46799999999999999999653
No 226
>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}
Probab=78.93 E-value=1.5 Score=36.58 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=39.9
Q ss_pred CCeEEEEchHHH-HHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVE-FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~-fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
..+..+.=|=.. -+-+.+...||+|++=.. +.+ ...++++..+..+.+.|+|||.+..
T Consensus 38 ~~~d~qmlDRLa~G~VsLp~stYD~V~~lt~-~~~-~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 38 KFVDQFLINKLNDGSITLENAKYETVHYLTP-EAQ-TDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp EEEEEEEHHHHHHTCCCCCSSSCCSEEEECC-CSS-CSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred chhhHHHHHHHhcCcccCCcccccEEEEecC-Ccc-chhhcCHHHHHHHHHHhCCCCEEEe
Confidence 346666555332 112234578999987442 233 3478999999999999999999986
No 227
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=77.94 E-value=2.9 Score=39.46 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=36.5
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCC----HHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE----KPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t----~eFy~~v~~~L~~gGilv~ 220 (334)
.+|++++.+|.. ...+ ..||+|++-..= +-+. ..+++.++++|+|||.++.
T Consensus 251 ~~~v~~~~~d~~---~~~p-~~~D~v~~~~vl------h~~~d~~~~~~L~~~~~~L~pgG~l~i 305 (369)
T 3gwz_A 251 ADRCEILPGDFF---ETIP-DGADVYLIKHVL------HDWDDDDVVRILRRIATAMKPDSRLLV 305 (369)
T ss_dssp TTTEEEEECCTT---TCCC-SSCSEEEEESCG------GGSCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCceEEeccCCC---CCCC-CCceEEEhhhhh------ccCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 468999999976 2333 379999874321 1122 2589999999999999886
No 228
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=77.61 E-value=2.1 Score=41.88 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=37.0
Q ss_pred eEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 163 VRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 163 v~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++.+|+.+++.. +||+||+|.+.. -...++.+.+. .|+|+|++.+.+
T Consensus 339 v~~~~~d~~~~~~~----~fD~Vv~dPPr~------g~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 339 AEFEVASDREVSVK----GFDTVIVDPPRA------GLHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp EEEEECCTTTCCCT----TCSEEEECCCTT------CSCHHHHHHHH-HHCCSEEEEEES
T ss_pred EEEEECChHHcCcc----CCCEEEEcCCcc------chHHHHHHHHH-hcCCCcEEEEEC
Confidence 99999999887532 799999986521 13356777776 599999998855
No 229
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=77.52 E-value=0.75 Score=40.89 Aligned_cols=57 Identities=18% Similarity=0.352 Sum_probs=37.5
Q ss_pred EEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchh
Q 019882 165 LHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMW 226 (334)
Q Consensus 165 viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~ 226 (334)
++.+|+... . .++++||+|++...--.... . ...+++.+++.|+|||+++....+++
T Consensus 100 ~~~~d~~~~-~-~~~~~fD~v~~~~~~~~~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 156 (260)
T 2avn_A 100 VVEAKAEDL-P-FPSGAFEAVLALGDVLSYVE-N--KDKAFSEIRRVLVPDGLLIATVDNFY 156 (260)
T ss_dssp EEECCTTSC-C-SCTTCEEEEEECSSHHHHCS-C--HHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred EEECcHHHC-C-CCCCCEEEEEEcchhhhccc-c--HHHHHHHHHHHcCCCeEEEEEeCChH
Confidence 777786542 1 22468999998531000001 1 46799999999999999998665544
No 230
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=76.84 E-value=0.27 Score=43.28 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=36.4
Q ss_pred e-EEEEchHHHHHh--hCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 163 V-RLHIGDAVEFLR--QVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 163 v-~viv~Dg~~fL~--~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
+ +++..|..+... ....++||+||.-..=...+...---..+++.+++.|+|||+++..
T Consensus 136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 197 (265)
T 2i62_A 136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMV 197 (265)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Confidence 7 889999776432 1112689999974321000000001246889999999999999863
No 231
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=75.98 E-value=1.9 Score=38.15 Aligned_cols=56 Identities=7% Similarity=0.052 Sum_probs=34.4
Q ss_pred CCeEEEEchHHHHHhh---CCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQ---VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~---~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+| .+... .++++||+|++...=..-+. ...+.+.+++.++|||.++...
T Consensus 101 ~~v~~~~~d--~~~~~~~~~~~~~fD~v~~~~~l~~~~~----~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 101 DRLTVHFNT--NLSDDLGPIADQHFDRVVLAHSLWYFAS----ANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp GGEEEECSC--CTTTCCGGGTTCCCSEEEEESCGGGSSC----HHHHHHHHHHHTTTCSEEEEEE
T ss_pred CceEEEECC--hhhhccCCCCCCCEEEEEEccchhhCCC----HHHHHHHHHHHhCCCCEEEEEE
Confidence 689999998 32221 12468999997542111110 1346677777777799998743
No 232
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=75.92 E-value=2.8 Score=40.82 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=38.5
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCC-CCCCcCC-----C-------CHHHHHHHHHhcCCCcEEEEec
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDP-VGPAQEL-----V-------EKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp-~gpa~~L-----~-------t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++++.+|.+.... ..+||+||.+.+=. ......- | ...|++.+.+.|+|||.++.-.
T Consensus 237 ~~~i~~gD~l~~~~---~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 237 RSPIVCEDSLEKEP---STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp CCSEEECCTTTSCC---SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEeeCCCCCCcc---cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 78899999765421 24799999985311 1000000 0 1489999999999999987544
No 233
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=75.91 E-value=3.9 Score=38.93 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=28.8
Q ss_pred CCceeEEEECCCCCCCCCcCC-CCHHHHHHHHHhcCCCcEEEEec
Q 019882 179 RGKYDAIIVDSSDPVGPAQEL-VEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 179 ~~~yDvIIvD~~dp~gpa~~L-~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
+++||+|+.-..= .++ --..|++.+++.|+|||+++...
T Consensus 169 ~~~fD~I~~~~vl-----~h~~d~~~~l~~~~r~LkpgG~l~i~~ 208 (416)
T 4e2x_A 169 EGPANVIYAANTL-----CHIPYVQSVLEGVDALLAPDGVFVFED 208 (416)
T ss_dssp HCCEEEEEEESCG-----GGCTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEEEECChH-----HhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 3689999975431 111 23679999999999999999754
No 234
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=75.80 E-value=1.4 Score=39.82 Aligned_cols=55 Identities=9% Similarity=0.183 Sum_probs=41.1
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
..|++++.+|+.+.+.. +++||+|++- |.... .-.++.....+.|+++|.++.|.
T Consensus 71 ~~~I~~~~gD~l~~~~~--~~~~D~Ivia-----GmGg~-lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 71 TSKIDVRLANGLSAFEE--ADNIDTITIC-----GMGGR-LIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp TTTEEEEECSGGGGCCG--GGCCCEEEEE-----EECHH-HHHHHHHHTGGGGTTCCEEEEEE
T ss_pred CCcEEEEECchhhcccc--ccccCEEEEe-----CCchH-HHHHHHHHHHHHhCcCCEEEEEC
Confidence 35999999999988753 2369999872 22211 23568888999999999999965
No 235
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=75.77 E-value=1.8 Score=41.10 Aligned_cols=110 Identities=24% Similarity=0.301 Sum_probs=61.6
Q ss_pred hHHhhCcc--c--c---cCC-CCCCeEEEEchHHHHHhhCCCCceeEEEECCCCCC-CC--CcCCCC----HHHHHHHHH
Q 019882 146 VSKKYFPE--L--A---VGF-EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV-GP--AQELVE----KPFFDTIAK 210 (334)
Q Consensus 146 vak~~fp~--l--~---~~~-~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~-gp--a~~L~t----~eFy~~v~~ 210 (334)
+.++++|+ + + ..+ .++.+ .+.+|.... .. +.+|||||.|..... |. ..++-+ ..-++-+.+
T Consensus 130 VLr~~~p~g~~VVavDL~~~~sda~~-~IqGD~~~~-~~--~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~ 205 (344)
T 3r24_A 130 VLRQWLPTGTLLVDSDLNDFVSDADS-TLIGDCATV-HT--ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQ 205 (344)
T ss_dssp HHHHHSCTTCEEEEEESSCCBCSSSE-EEESCGGGE-EE--SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHH
T ss_pred HHHHhCCCCcEEEEeeCcccccCCCe-EEEcccccc-cc--CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHH
Confidence 67888886 2 1 112 23343 499996552 22 367999999987643 32 222222 333445788
Q ss_pred hcCCCcEEEEec-cchhhhhhHHHHHHHHHHHhcCCceeEEEEEeeec-CCCcEEEEEeec
Q 019882 211 ALRPGGVLCNMA-ESMWLHTHLIEDMISICRETFKGSVHYAWASVPTY-PSGIIGFLICST 269 (334)
Q Consensus 211 ~L~~gGilv~q~-~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vPsy-p~g~w~f~laSk 269 (334)
.|+|||-+++-. ...+ . ..+..+++.|. .|..+- |+- ....-.|++|..
T Consensus 206 ~LkpGGsFvVKVFQGsg-~-----~~L~~lrk~F~-~VK~fK---~ASRa~SsEvYLVG~g 256 (344)
T 3r24_A 206 KLALGGSIAVKITEHSW-N-----ADLYKLMGHFS-WWTAFV---TNVNASSSEAFLIGAN 256 (344)
T ss_dssp HEEEEEEEEEEECSSSC-C-----HHHHHHHTTEE-EEEEEE---EGGGTTSSCEEEEEEE
T ss_pred hCcCCCEEEEEEecCCC-H-----HHHHHHHhhCC-eEEEEC---CCCCCCCeeEEEEeee
Confidence 999999999732 1112 1 22344567888 665542 221 112346777754
No 236
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=75.13 E-value=4.1 Score=37.72 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=44.7
Q ss_pred c-hHHHHHhhCCCCceeEEEECCCCCCCCC--cCCCCHHHHHHHHHhcCCCc-EEEEeccchhhhhhHHHHHHHHHHHhc
Q 019882 168 G-DAVEFLRQVPRGKYDAIIVDSSDPVGPA--QELVEKPFFDTIAKALRPGG-VLCNMAESMWLHTHLIEDMISICRETF 243 (334)
Q Consensus 168 ~-Dg~~fL~~~~~~~yDvIIvD~~dp~gpa--~~L~t~eFy~~v~~~L~~gG-ilv~q~~sp~~~~~~~~~i~~tl~~vF 243 (334)
+ |-++ ....++|+||.|...-.+.. .+.-+..-++.+.+.|+||| -+++-.=.+. ...+...++.+++.|
T Consensus 129 G~Df~~----~~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~--~~~~~~~l~~lk~~F 202 (269)
T 2px2_A 129 GVDVFY----KPSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPY--MPKVIEKLESLQRRF 202 (269)
T ss_dssp SCCGGG----SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTT--SHHHHHHHHHHHHHH
T ss_pred cCCccC----CCCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCC--chHHHHHHHHHHHHc
Confidence 5 7654 22357999999986432221 11112124566778999999 8876331121 134667788999999
Q ss_pred CCcee
Q 019882 244 KGSVH 248 (334)
Q Consensus 244 ~~~v~ 248 (334)
. .|.
T Consensus 203 ~-~vk 206 (269)
T 2px2_A 203 G-GGL 206 (269)
T ss_dssp C-CEE
T ss_pred C-CEE
Confidence 9 443
No 237
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=75.00 E-value=0.51 Score=44.63 Aligned_cols=57 Identities=11% Similarity=0.097 Sum_probs=36.1
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+|++++.+|..+.-...+ +.||+|++-..=..-+.. -...+++.++++|+|||.++.
T Consensus 229 ~~v~~~~~d~~~~~~~~p-~~~D~v~~~~vlh~~~~~--~~~~~l~~~~~~L~pgG~l~i 285 (363)
T 3dp7_A 229 ERIHGHGANLLDRDVPFP-TGFDAVWMSQFLDCFSEE--EVISILTRVAQSIGKDSKVYI 285 (363)
T ss_dssp GGEEEEECCCCSSSCCCC-CCCSEEEEESCSTTSCHH--HHHHHHHHHHHHCCTTCEEEE
T ss_pred cceEEEEccccccCCCCC-CCcCEEEEechhhhCCHH--HHHHHHHHHHHhcCCCcEEEE
Confidence 689999999654200022 579999973321000000 013689999999999999876
No 238
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=73.66 E-value=0.5 Score=47.09 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=37.8
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|..++ .. .++||+||.+...-..... -..+.+..+++.|+|||+++...
T Consensus 207 ~~v~~~~~d~~~~--~~-~~~fD~Ivs~~~~~~~~~e--~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 207 DRIVVIPGKVEEV--SL-PEQVDIIISEPMGYMLFNE--RMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp TTEEEEESCTTTC--CC-SSCEEEEECCCCHHHHTCH--HHHHHHHHGGGGEEEEEEEESCE
T ss_pred CcEEEEECchhhC--cc-CCCeEEEEEeCchHhcCcH--HHHHHHHHHHHhcCCCCEEEEEe
Confidence 6899999998764 22 2579999986431000000 01456777899999999998544
No 239
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=73.07 E-value=2.2 Score=39.65 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=37.5
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCC----HHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE----KPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t----~eFy~~v~~~L~~gGilv~ 220 (334)
+|++++.+|..+.-... .+.||+|++-.. -+-++ ..+++.++++|+|||.++.
T Consensus 229 ~~v~~~~~d~~~~~~~~-~~~~D~v~~~~v------lh~~~~~~~~~~l~~~~~~L~pgG~l~i 285 (352)
T 3mcz_A 229 GRVEFFEKNLLDARNFE-GGAADVVMLNDC------LHYFDAREAREVIGHAAGLVKPGGALLI 285 (352)
T ss_dssp GGEEEEECCTTCGGGGT-TCCEEEEEEESC------GGGSCHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CceEEEeCCcccCcccC-CCCccEEEEecc------cccCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 58999999976542112 356999998321 11122 5699999999999999876
No 240
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=73.03 E-value=2.6 Score=39.17 Aligned_cols=54 Identities=33% Similarity=0.328 Sum_probs=35.9
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+|++++.+|..+. .+ ..||+|++...=..-+. ---..+++.+++.|+|||.++.
T Consensus 233 ~~v~~~~~d~~~~---~~-~~~D~v~~~~vl~~~~~--~~~~~~l~~~~~~L~pgG~l~i 286 (360)
T 1tw3_A 233 DRVDVVEGDFFEP---LP-RKADAIILSFVLLNWPD--HDAVRILTRCAEALEPGGRILI 286 (360)
T ss_dssp TTEEEEECCTTSC---CS-SCEEEEEEESCGGGSCH--HHHHHHHHHHHHTEEEEEEEEE
T ss_pred CceEEEeCCCCCC---CC-CCccEEEEcccccCCCH--HHHHHHHHHHHHhcCCCcEEEE
Confidence 5899999997652 22 34999997442100000 0013699999999999998775
No 241
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=72.79 E-value=4.1 Score=41.05 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=47.8
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCC----------cCCCCHHHHHHHHHhcCCCcEEEEeccchhh-hhh
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPA----------QELVEKPFFDTIAKALRPGGVLCNMAESMWL-HTH 230 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa----------~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~-~~~ 230 (334)
+++++.+|.+..-... ..+||+||.+.+=..... ..-....|++.+.+.|+|||.++.-..+-++ ...
T Consensus 243 ~~~I~~gDtL~~~~~~-~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~ 321 (541)
T 2ar0_A 243 GGAIRLGNTLGSDGEN-LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGG 321 (541)
T ss_dssp TBSEEESCTTSHHHHT-SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCT
T ss_pred cCCeEeCCCccccccc-ccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCc
Confidence 4889999987654322 357999999864211000 0011237999999999999998865433332 222
Q ss_pred HHHHHHHHHHHhc
Q 019882 231 LIEDMISICRETF 243 (334)
Q Consensus 231 ~~~~i~~tl~~vF 243 (334)
....+.+.|.+.+
T Consensus 322 ~~~~iR~~L~~~~ 334 (541)
T 2ar0_A 322 KGTDIRRDLMDKC 334 (541)
T ss_dssp HHHHHHHHHHHHE
T ss_pred HHHHHHHHHhhcC
Confidence 2344445554443
No 242
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=72.76 E-value=0.41 Score=43.32 Aligned_cols=58 Identities=22% Similarity=0.152 Sum_probs=35.3
Q ss_pred eEEEEchHHHHHh----hCCCCceeEEEECCCCCCCCCcCC-CCHHHHHHHHHhcCCCcEEEEe
Q 019882 163 VRLHIGDAVEFLR----QVPRGKYDAIIVDSSDPVGPAQEL-VEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 163 v~viv~Dg~~fL~----~~~~~~yDvIIvD~~dp~gpa~~L-~t~eFy~~v~~~L~~gGilv~q 221 (334)
++++..|....+. ..++++||+|+.=..=...+. .+ --..+++.+++.|+|||.++..
T Consensus 152 ~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 152 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSP-DLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCS-SHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcC-CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6677788765332 112356999997432000000 00 1246889999999999999863
No 243
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Probab=72.24 E-value=5.7 Score=37.02 Aligned_cols=60 Identities=23% Similarity=0.447 Sum_probs=43.2
Q ss_pred CceeEEEECCCCCCCCCcCCCCHHHHHHHH--------------HhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCC
Q 019882 180 GKYDAIIVDSSDPVGPAQELVEKPFFDTIA--------------KALRPGGVLCNMAESMWLHTHLIEDMISICRETFKG 245 (334)
Q Consensus 180 ~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~--------------~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~ 245 (334)
.+||+|+++.-.|... .-|+.|- ++|+|||.+++-+.. +..+....++..+..-|.
T Consensus 210 grYDlVfvNv~TpyR~-------HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYG--yADR~SE~vV~alARkF~- 279 (324)
T 3trk_A 210 GRYDLVVINIHTPFRI-------HHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYG--YADRTSERVICVLGRKFR- 279 (324)
T ss_dssp CCEEEEEEECCCCCCS-------SHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECC--CCSHHHHHHHHHHHTTEE-
T ss_pred CceeEEEEecCCcccc-------chHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeec--ccccchHHHHHHHHhhhe-
Confidence 5899999999777542 2666653 679999999986533 234456788888888887
Q ss_pred ceeE
Q 019882 246 SVHY 249 (334)
Q Consensus 246 ~v~~ 249 (334)
.++.
T Consensus 280 ~~rv 283 (324)
T 3trk_A 280 SSRA 283 (324)
T ss_dssp EEEE
T ss_pred eeee
Confidence 4443
No 244
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=72.12 E-value=2.3 Score=39.65 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=54.1
Q ss_pred CCCceeEEEECCCCCCCCC--cCCCCHHHHHHHHHhcCCC--cEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEE
Q 019882 178 PRGKYDAIIVDSSDPVGPA--QELVEKPFFDTIAKALRPG--GVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWAS 253 (334)
Q Consensus 178 ~~~~yDvIIvD~~dp~gpa--~~L~t~eFy~~v~~~L~~g--Gilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~ 253 (334)
..+++|+|+.|..-..|.. .+.-+.+-++.+.+.|+|| |.+|+-.-.|+ ...+..+++.+++.|. .|.. .
T Consensus 153 ~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~py--g~~~~~l~~~lk~~F~-~V~~---~ 226 (282)
T 3gcz_A 153 EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPY--TPLIMEELSRLQLKHG-GGLV---R 226 (282)
T ss_dssp CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCC--SHHHHHHHHHHHHHHC-CEEE---C
T ss_pred CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCC--CccHHHHHHHHHHhcC-CEEE---E
Confidence 3468999999975333331 1222222366778899999 99998442222 2346778899999999 5543 4
Q ss_pred eeecCC---CcEEEEEeecCCC
Q 019882 254 VPTYPS---GIIGFLICSTEGP 272 (334)
Q Consensus 254 vPsyp~---g~w~f~laSk~~~ 272 (334)
-| . | ..-.|++|....+
T Consensus 227 KP-a-SR~~S~E~Y~V~~~r~n 246 (282)
T 3gcz_A 227 VP-L-SRNSTHEMYWVSGTRTD 246 (282)
T ss_dssp CT-T-SCTTCCCEEEETTCCCC
T ss_pred cC-C-CcccCcceeEEEecCCC
Confidence 56 2 2 1236788766543
No 245
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=71.63 E-value=3.2 Score=38.71 Aligned_cols=56 Identities=23% Similarity=0.257 Sum_probs=36.2
Q ss_pred CCCCeEEEEchHHHHHhh--CCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 159 EDPRVRLHIGDAVEFLRQ--VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~--~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.++|+......-+.++.. .+...||+|++|..-. .| ...+..+++.|+|||.++.-
T Consensus 127 ~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~-----sl--~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 127 QDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI-----SL--NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp TCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS-----CG--GGTHHHHHHHSCTTCEEEEE
T ss_pred hCcccceecccCceecchhhCCCCCCCEEEEEeeHh-----hH--HHHHHHHHHHcCcCCEEEEE
Confidence 357776553322333332 2233599999997521 11 56889999999999999863
No 246
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=71.19 E-value=3.5 Score=37.58 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=26.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCC
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV 193 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~ 193 (334)
.|++++.+|+.++|+..+ +.||+|++|..=|.
T Consensus 145 ~~i~~~~~D~~~~L~~~~-~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 145 ERLQLIHASSLTALTDIT-PRPQVVYLDPMFPH 176 (258)
T ss_dssp HHEEEEESCHHHHSTTCS-SCCSEEEECCCCCC
T ss_pred cCEEEEECCHHHHHHhCc-ccCCEEEEcCCCCC
Confidence 589999999999998764 47999999975443
No 247
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=71.13 E-value=2.1 Score=39.01 Aligned_cols=55 Identities=13% Similarity=0.244 Sum_probs=40.9
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
..|++++.+|+.+.+.. +++||+|++- |.... .-.++.+...+.|+++|.++.|.
T Consensus 71 ~~~I~v~~gD~l~~~~~--~~~~D~Ivia-----gmGg~-lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 71 TEQIDVRKGNGLAVIEK--KDAIDTIVIA-----GMGGT-LIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp TTTEEEEECSGGGGCCG--GGCCCEEEEE-----EECHH-HHHHHHHHTGGGGTTCCEEEEEE
T ss_pred CceEEEEecchhhccCc--cccccEEEEe-----CCchH-HHHHHHHHHHHHhCCCCEEEEEc
Confidence 35899999999987753 2359999872 22111 23568889999999999999965
No 248
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=70.17 E-value=1.2 Score=40.96 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=35.7
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECC-CCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDS-SDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~-~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+|++++.+|..+. ..+ +.||+|++-. ....... -...+++.++++|+|||.++.
T Consensus 215 ~~v~~~~~d~~~~--~~~-~~~D~v~~~~~l~~~~~~---~~~~~l~~~~~~L~pgG~l~i 269 (335)
T 2r3s_A 215 SRYHTIAGSAFEV--DYG-NDYDLVLLPNFLHHFDVA---TCEQLLRKIKTALAVEGKVIV 269 (335)
T ss_dssp GGEEEEESCTTTS--CCC-SCEEEEEEESCGGGSCHH---HHHHHHHHHHHHEEEEEEEEE
T ss_pred cceEEEecccccC--CCC-CCCcEEEEcchhccCCHH---HHHHHHHHHHHhCCCCcEEEE
Confidence 5899999997653 222 3599999832 1111000 114789999999999997664
No 249
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=69.34 E-value=0.79 Score=40.51 Aligned_cols=30 Identities=7% Similarity=0.098 Sum_probs=20.9
Q ss_pred CCCeEEEEchHHH-HHhhCC---CCceeEEEECC
Q 019882 160 DPRVRLHIGDAVE-FLRQVP---RGKYDAIIVDS 189 (334)
Q Consensus 160 dpRv~viv~Dg~~-fL~~~~---~~~yDvIIvD~ 189 (334)
+.|++++.+|+.+ ++...+ +++||+|+.+.
T Consensus 115 ~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~np 148 (254)
T 2h00_A 115 SDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNP 148 (254)
T ss_dssp TTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECC
T ss_pred CccEEEEEcchhhhhhhhhhcccCCcccEEEECC
Confidence 3579999999766 232222 25799999985
No 250
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=69.27 E-value=2.3 Score=36.35 Aligned_cols=59 Identities=15% Similarity=0.031 Sum_probs=36.7
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC-CcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP-AQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp-a~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+.+ +.. .++. |.|++..+-.... ..---..++++.+++.|+|||.++...
T Consensus 81 ~~v~~~~~d~~~-l~~-~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 81 PNLLYLWATAER-LPP-LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp TTEEEEECCSTT-CCS-CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred CceEEEecchhh-CCC-CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 589999999877 332 2344 7777544210000 000001579999999999999998743
No 251
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=69.17 E-value=6.8 Score=36.81 Aligned_cols=88 Identities=9% Similarity=0.072 Sum_probs=54.2
Q ss_pred CCceeEEEECCCCCCCCC--cCCCCHHHHHHHHHhcCCC-cEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEEEEEee
Q 019882 179 RGKYDAIIVDSSDPVGPA--QELVEKPFFDTIAKALRPG-GVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVP 255 (334)
Q Consensus 179 ~~~yDvIIvD~~dp~gpa--~~L~t~eFy~~v~~~L~~g-Gilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~~~~vP 255 (334)
++.+|+|+.|.....|.. .+.-+.+-++.+.+.|+|| |.+|+-.=.|+ ...+..++..++..|. .|.. .-|
T Consensus 145 ~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~y--G~~~~~ll~~lk~~F~-~V~~---~KP 218 (300)
T 3eld_A 145 TEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPY--HPDVIEKLERLQLRFG-GGIV---RVP 218 (300)
T ss_dssp CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTT--SHHHHHHHHHHHHHHC-CEEE---CCT
T ss_pred CCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccc--CccHHHHHHHHHHhCC-cEEE---EeC
Confidence 468999999975333321 1111222367778999999 99998543332 2356788899999999 5543 456
Q ss_pred ec-CCCcEEEEEeecCCC
Q 019882 256 TY-PSGIIGFLICSTEGP 272 (334)
Q Consensus 256 sy-p~g~w~f~laSk~~~ 272 (334)
+- ++..=.|++|....+
T Consensus 219 aSR~~S~E~Y~V~~~r~n 236 (300)
T 3eld_A 219 FSRNSTHEMYYISGARNN 236 (300)
T ss_dssp TSCTTCCCEEEESSCCCC
T ss_pred CCCCCChHHeeeccCCCC
Confidence 11 112336788766543
No 252
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=68.76 E-value=3 Score=36.94 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=36.8
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.++++++.+|+.++ . .++++||+|+.-..=..-+ --..+++.+++.|+ ||.++.
T Consensus 75 ~~~~~~~~~d~~~~-~-~~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~Lk-gG~~~~ 128 (261)
T 3ege_A 75 HPQVEWFTGYAENL-A-LPDKSVDGVISILAIHHFS----HLEKSFQEMQRIIR-DGTIVL 128 (261)
T ss_dssp CTTEEEECCCTTSC-C-SCTTCBSEEEEESCGGGCS----SHHHHHHHHHHHBC-SSCEEE
T ss_pred ccCCEEEECchhhC-C-CCCCCEeEEEEcchHhhcc----CHHHHHHHHHHHhC-CcEEEE
Confidence 34899999998652 2 2346899999864311001 12579999999999 995554
No 253
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=68.69 E-value=1.4 Score=45.62 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=42.5
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
+.+|+|+.+|.+++ +.+ ++.||||...-+-.+.-+. ..+.+....+-|+|||+++
T Consensus 410 ~dkVtVI~gd~eev--~LP-EKVDIIVSEwMG~fLl~E~--mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 410 GSQVTVVSSDMREW--VAP-EKADIIVSELLGSFADNEL--SPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp GGGEEEEESCTTTC--CCS-SCEEEEECCCCBTTBGGGC--HHHHHHHHGGGEEEEEEEE
T ss_pred CCeEEEEeCcceec--cCC-cccCEEEEEcCcccccccC--CHHHHHHHHHhcCCCcEEc
Confidence 57999999998876 343 7899999988764443333 2467778889999999998
No 254
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=67.71 E-value=7.4 Score=35.15 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=33.7
Q ss_pred CCeEEE---EchHHHHH-hhCCCCceeEEEE-CCCCCCCCCcCCCCHHHHHHHHHhcC---C--CcEEEE
Q 019882 161 PRVRLH---IGDAVEFL-RQVPRGKYDAIIV-DSSDPVGPAQELVEKPFFDTIAKALR---P--GGVLCN 220 (334)
Q Consensus 161 pRv~vi---v~Dg~~fL-~~~~~~~yDvIIv-D~~dp~gpa~~L~t~eFy~~v~~~L~---~--gGilv~ 220 (334)
++++++ .+|...-+ ....+++||+||. |..-. +. .-..+++.+++.|+ | ||+++.
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~--~~---~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 139 ASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSF--HQ---AHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSC--GG---GHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred CCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccC--hH---HHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 478887 34433222 2101357999997 65321 11 12568999999999 9 997654
No 255
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=67.47 E-value=2.6 Score=41.55 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=36.4
Q ss_pred CCeEEEEchHHH---HHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 161 PRVRLHIGDAVE---FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 161 pRv~viv~Dg~~---fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.+++++.+|+.. .+... .+.||+|++..+- ..+ . -.+.++.+.+.|+|||.++..
T Consensus 301 ~nV~~i~gD~~~~~~~~~~~-~~~FDvIvvn~~l-~~~--d--~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 301 NNVEFSLKKSFVDNNRVAEL-IPQCDVILVNNFL-FDE--D--LNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp CCEEEEESSCSTTCHHHHHH-GGGCSEEEECCTT-CCH--H--HHHHHHHHHTTCCTTCEEEES
T ss_pred CceEEEEcCccccccccccc-cCCCCEEEEeCcc-ccc--c--HHHHHHHHHHhCCCCeEEEEe
Confidence 689999987652 12221 2479999985331 111 0 124678999999999999973
No 256
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=67.27 E-value=3.4 Score=38.88 Aligned_cols=55 Identities=24% Similarity=0.201 Sum_probs=36.3
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.++++++.+|..+ ..+ . ||+|++-..=..-+. .--..+++.++++|+|||.++..
T Consensus 251 ~~~v~~~~~d~~~---~~~-~-~D~v~~~~~lh~~~d--~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 251 LSGIEHVGGDMFA---SVP-Q-GDAMILKAVCHNWSD--EKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp CTTEEEEECCTTT---CCC-C-EEEEEEESSGGGSCH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCEEEeCCccc---CCC-C-CCEEEEecccccCCH--HHHHHHHHHHHHhcCCCCEEEEE
Confidence 3789999999765 233 3 999997432110000 00127999999999999988753
No 257
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=67.27 E-value=2.6 Score=39.39 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=35.9
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCC---HHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE---KPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t---~eFy~~v~~~L~~gGilv~ 220 (334)
+|++++.+|..+. .+ ..||+|++...=. .+-. ..+++.+++.|+|||.++.
T Consensus 232 ~~v~~~~~d~~~~---~~-~~~D~v~~~~vl~-----~~~~~~~~~~l~~~~~~L~pgG~l~i 285 (374)
T 1qzz_A 232 DRVTVAEGDFFKP---LP-VTADVVLLSFVLL-----NWSDEDALTILRGCVRALEPGGRLLV 285 (374)
T ss_dssp TTEEEEECCTTSC---CS-CCEEEEEEESCGG-----GSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CceEEEeCCCCCc---CC-CCCCEEEEecccc-----CCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 5899999997652 22 3499999854211 1111 3699999999999997765
No 258
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=66.47 E-value=0.95 Score=39.97 Aligned_cols=59 Identities=10% Similarity=-0.037 Sum_probs=38.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC-CcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP-AQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp-a~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
++++++.+|+..+-... .+.+|.|.+..+.|... ....-..++++.+++.|+|||.++.
T Consensus 78 ~~v~~~~~d~~~l~~~~-~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 78 SNVVFVIAAAESLPFEL-KNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp SSEEEECCBTTBCCGGG-TTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred CCeEEEEcCHHHhhhhc-cCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 57999999987652212 24577777654322110 0112235799999999999999987
No 259
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=65.44 E-value=3.8 Score=40.49 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=36.3
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.++++++.+|..+.--...-..+|+|++-.+- ..+ . -.+-+..+.+.|+|||.+|+
T Consensus 231 ~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~p--d--l~~aL~Ei~RvLKPGGrIVs 286 (438)
T 3uwp_A 231 HAEYTLERGDFLSEEWRERIANTSVIFVNNFA-FGP--E--VDHQLKERFANMKEGGRIVS 286 (438)
T ss_dssp CCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-CCH--H--HHHHHHHHHTTSCTTCEEEE
T ss_pred CCCeEEEECcccCCccccccCCccEEEEcccc-cCc--h--HHHHHHHHHHcCCCCcEEEE
Confidence 47999999998653211101369999985431 111 0 13456678899999999997
No 260
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=64.74 E-value=5.6 Score=41.79 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=43.5
Q ss_pred CCCeEEEEchHHHHHh---hCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLR---QVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~---~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
+.+|+|+.+|.+++-- ....++.|+||...-.-.+. ..| ..|.+..+.+-|+|||+++=
T Consensus 471 ~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~-nEL-~pe~Ld~v~r~Lkp~Gi~iP 532 (745)
T 3ua3_A 471 KRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGD-NEL-SPECLDGVTGFLKPTTISIP 532 (745)
T ss_dssp TTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBG-GGS-HHHHHHTTGGGSCTTCEEES
T ss_pred CCeEEEEeCchhhcccccccCCCCcccEEEEeccccccc-hhc-cHHHHHHHHHhCCCCcEEEC
Confidence 4689999999998843 11136899999998643332 223 46788888999999999984
No 261
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=64.41 E-value=6.4 Score=36.62 Aligned_cols=63 Identities=16% Similarity=0.033 Sum_probs=36.9
Q ss_pred CCeEEEEchHHHHHhhCC-CCceeEEEECCCC-CCCCC----c----------CC-----CCHHHHHHHHHhcCCCcEEE
Q 019882 161 PRVRLHIGDAVEFLRQVP-RGKYDAIIVDSSD-PVGPA----Q----------EL-----VEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~-~~~yDvIIvD~~d-p~gpa----~----------~L-----~t~eFy~~v~~~L~~gGilv 219 (334)
.+++++.+|+.++..... ..+||+|++|++- ..|.. . .+ ..++..+.+.+.|+ ||.+|
T Consensus 153 ~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lv 231 (309)
T 2b9e_A 153 SCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLV 231 (309)
T ss_dssp CSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEE
T ss_pred CeEEEEeCChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEE
Confidence 479999999987653221 1469999999864 22221 0 00 11245556666676 99888
Q ss_pred Eeccc
Q 019882 220 NMAES 224 (334)
Q Consensus 220 ~q~~s 224 (334)
--+.+
T Consensus 232 YsTCs 236 (309)
T 2b9e_A 232 YSTCS 236 (309)
T ss_dssp EEESC
T ss_pred EECCC
Confidence 54433
No 262
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=63.34 E-value=5.1 Score=36.71 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=35.8
Q ss_pred CCeEEEEchHHHHHhhCC-CCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVP-RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~-~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.+|++...|..+. ..+ .++||+|++=.. -.+.. .--.+..++.++++|+|||+++.
T Consensus 194 ~~V~F~~~dl~~~--~~~~~~~fDlI~crnv-liyf~-~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 194 NYVEFSSVNLLEK--QYNVPGPFDAIFCRNV-MIYFD-KTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp TTEEEEECCTTCS--SCCCCCCEEEEEECSS-GGGSC-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ccCeEEecccCCC--CCCcCCCeeEEEECCc-hHhCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 4788999996651 111 357999998211 00000 00125688999999999999987
No 263
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=61.57 E-value=11 Score=35.75 Aligned_cols=90 Identities=20% Similarity=0.257 Sum_probs=51.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC-------CcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHH
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP-------AQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIE 233 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp-------a~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~ 233 (334)
++++++.+|+.+.-.. .++||+||+|.+ .+. ...|| .+|++.+++.| .+++++. +.++ ..+.
T Consensus 268 ~~i~~~~~D~~~~~~~--~~~fD~Ii~npP--yg~r~~~~~~~~~ly-~~~~~~l~r~l-~g~~~~i-~~~~----~~~~ 336 (373)
T 3tm4_A 268 DKIKFIQGDATQLSQY--VDSVDFAISNLP--YGLKIGKKSMIPDLY-MKFFNELAKVL-EKRGVFI-TTEK----KAIE 336 (373)
T ss_dssp GGCEEEECCGGGGGGT--CSCEEEEEEECC--CC------CCHHHHH-HHHHHHHHHHE-EEEEEEE-ESCH----HHHH
T ss_pred CceEEEECChhhCCcc--cCCcCEEEECCC--CCcccCcchhHHHHH-HHHHHHHHHHc-CCeEEEE-ECCH----HHHH
Confidence 5899999999886432 368999999864 221 11122 67888999999 3333333 2222 2222
Q ss_pred HHHHHHHH-hcCCceeEEEEEeeecCCCcEEEEEeec
Q 019882 234 DMISICRE-TFKGSVHYAWASVPTYPSGIIGFLICST 269 (334)
Q Consensus 234 ~i~~tl~~-vF~~~v~~~~~~vPsyp~g~w~f~laSk 269 (334)
. .+.+ -|. .. -..+.|.++.+.-++-++
T Consensus 337 ~---~~~~~G~~-~~----~~~~~~nG~l~~~~~~~~ 365 (373)
T 3tm4_A 337 E---AIAENGFE-II----HHRVIGHGGLMVHLYVVK 365 (373)
T ss_dssp H---HHHHTTEE-EE----EEEEEEETTEEEEEEEEE
T ss_pred H---HHHHcCCE-EE----EEEEEEcCCEEEEEEecc
Confidence 2 2222 243 11 235667777777666554
No 264
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=61.48 E-value=3.2 Score=39.18 Aligned_cols=54 Identities=22% Similarity=0.157 Sum_probs=34.1
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.+|++++.+|..+ ..++ . |+|++-..=..-+.. --..+++.++++|+|||.++.
T Consensus 243 ~~~v~~~~~D~~~---~~p~-~-D~v~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~l~i 296 (364)
T 3p9c_A 243 FPGVTHVGGDMFK---EVPS-G-DTILMKWILHDWSDQ--HCATLLKNCYDALPAHGKVVL 296 (364)
T ss_dssp CTTEEEEECCTTT---CCCC-C-SEEEEESCGGGSCHH--HHHHHHHHHHHHSCTTCEEEE
T ss_pred cCCeEEEeCCcCC---CCCC-C-CEEEehHHhccCCHH--HHHHHHHHHHHHcCCCCEEEE
Confidence 4788888888765 2232 2 888864321000000 013689999999999998876
No 265
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=61.11 E-value=12 Score=35.18 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=47.9
Q ss_pred CceeEEEECCCCCCCCCcCCCC--HH-------HHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcCCceeEE
Q 019882 180 GKYDAIIVDSSDPVGPAQELVE--KP-------FFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYA 250 (334)
Q Consensus 180 ~~yDvIIvD~~dp~gpa~~L~t--~e-------Fy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~~~v~~~ 250 (334)
++||+|++|.-.+..- +=|+ .+ -.+...++|+|||.+++-+-. ...+....+...|++.|. .|+.
T Consensus 205 ~k~DvV~SDMApn~sG--h~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvyg--gaDr~se~lv~~LaR~F~-~Vr~- 278 (320)
T 2hwk_A 205 PKYDIIFVNVRTPYKY--HHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYG--YADRASESIIGAIARQFK-FSRV- 278 (320)
T ss_dssp CCEEEEEEECCCCCCS--CHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECC--CCSHHHHHHHHHHHTTEE-EEEE-
T ss_pred CcCCEEEEcCCCCCCC--ccccccchHHHHHHHHHHHHHHhcCCCceEEEEEec--CCcccHHHHHHHHHHhcc-eeee-
Confidence 5799999998755432 1111 01 223456899999999974311 112345788889999998 5554
Q ss_pred EEEee--ecCCCcEEEEEeec
Q 019882 251 WASVP--TYPSGIIGFLICST 269 (334)
Q Consensus 251 ~~~vP--syp~g~w~f~laSk 269 (334)
.-| +=. ..-.|++|+.
T Consensus 279 --vKP~ASR~-StEvf~La~g 296 (320)
T 2hwk_A 279 --CKPKSSLE-ETEVLFVFIG 296 (320)
T ss_dssp --ECCTTCCS-TTCEEEEEEE
T ss_pred --eCCCCccc-cceEEEEEEe
Confidence 234 111 1235777764
No 266
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=60.81 E-value=6.9 Score=36.43 Aligned_cols=55 Identities=18% Similarity=0.082 Sum_probs=35.6
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.+|++++.+|..+. .. ..+|+|++-..=...+. -.-..+++.++++|+|||.++.
T Consensus 239 ~~~v~~~~~d~~~~--~~--~~~D~v~~~~vlh~~~d--~~~~~~l~~~~~~L~pgG~l~i 293 (359)
T 1x19_A 239 ADRMRGIAVDIYKE--SY--PEADAVLFCRILYSANE--QLSTIMCKKAFDAMRSGGRLLI 293 (359)
T ss_dssp TTTEEEEECCTTTS--CC--CCCSEEEEESCGGGSCH--HHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCEEEEeCccccC--CC--CCCCEEEEechhccCCH--HHHHHHHHHHHHhcCCCCEEEE
Confidence 35799999997654 22 23599987432100000 0125689999999999999864
No 267
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=60.66 E-value=3.8 Score=37.08 Aligned_cols=30 Identities=33% Similarity=0.607 Sum_probs=24.3
Q ss_pred CCeEEEEchHHHHHhhCCC--CceeEEEECCC
Q 019882 161 PRVRLHIGDAVEFLRQVPR--GKYDAIIVDSS 190 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~--~~yDvIIvD~~ 190 (334)
.|++++.+|+.+++...++ ++||+|++|..
T Consensus 139 ~ri~~~~~d~~~~l~~~~~~~~~fD~V~~dP~ 170 (258)
T 2r6z_A 139 ARINLHFGNAAEQMPALVKTQGKPDIVYLDPM 170 (258)
T ss_dssp TTEEEEESCHHHHHHHHHHHHCCCSEEEECCC
T ss_pred cCeEEEECCHHHHHHhhhccCCCccEEEECCC
Confidence 4799999999999875432 57999999864
No 268
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=60.33 E-value=8.5 Score=35.02 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=28.1
Q ss_pred CceeEEEECCCCCCCCCcCCCC---HHHHHHHHHhcCCCcEEEEeccch
Q 019882 180 GKYDAIIVDSSDPVGPAQELVE---KPFFDTIAKALRPGGVLCNMAESM 225 (334)
Q Consensus 180 ~~yDvIIvD~~dp~gpa~~L~t---~eFy~~v~~~L~~gGilv~q~~sp 225 (334)
++||+|+.+..= .++.. ..+++.+.+.| |||+++.+....
T Consensus 109 ~~fD~Vv~~~~l-----~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 109 GHFDFVLNDRLI-----NRFTTEEARRACLGMLSLV-GSGTVRASVKLG 151 (261)
T ss_dssp TCCSEEEEESCG-----GGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred CCccEEEEhhhh-----HhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence 579999997531 11211 34788999999 999999866433
No 269
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=60.18 E-value=6.8 Score=42.15 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=36.2
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCH---HHHHHHHHhcCCCcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEK---PFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~---eFy~~v~~~L~~gGilv~ 220 (334)
++++++.+|+.+.-. .++.||+|+.-. ...++-.. .|++.+.+.|+|| +++.
T Consensus 778 ~nVefiqGDa~dLp~--~d~sFDlVV~~e-----VLeHL~dp~l~~~L~eI~RvLKPG-~LII 832 (950)
T 3htx_A 778 KSATLYDGSILEFDS--RLHDVDIGTCLE-----VIEHMEEDQACEFGEKVLSLFHPK-LLIV 832 (950)
T ss_dssp SEEEEEESCTTSCCT--TSCSCCEEEEES-----CGGGSCHHHHHHHHHHHHHTTCCS-EEEE
T ss_pred CceEEEECchHhCCc--ccCCeeEEEEeC-----chhhCChHHHHHHHHHHHHHcCCC-EEEE
Confidence 589999999876432 246899999832 22333333 4899999999999 5444
No 270
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=59.81 E-value=16 Score=37.50 Aligned_cols=66 Identities=21% Similarity=0.377 Sum_probs=45.4
Q ss_pred CCceeEEEECCCCCCCCCcCCCCHHHHHHH--------------HHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhcC
Q 019882 179 RGKYDAIIVDSSDPVGPAQELVEKPFFDTI--------------AKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 244 (334)
Q Consensus 179 ~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v--------------~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF~ 244 (334)
+.+||+|++|.-.|... .-|+.| -++|+|||.++.-+.. +..+....++..+..-|.
T Consensus 219 ~~ryDlvfvn~~t~yr~-------HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YG--yADr~sE~vv~alaRkF~ 289 (670)
T 4gua_A 219 QARYDLVFINIGTKYRN-------HHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYG--YADRNSEDVVTALARKFV 289 (670)
T ss_dssp CCCEEEEEECCCCCCCS-------CHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC--CCSHHHHHHHHHHHHTEE
T ss_pred CCcccEEEEecCCCccc-------chHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEee--ccccchHHHHHHHHhhee
Confidence 35899999999776432 256655 3689999999986533 334556788888888887
Q ss_pred CceeEEEEEeeec
Q 019882 245 GSVHYAWASVPTY 257 (334)
Q Consensus 245 ~~v~~~~~~vPsy 257 (334)
.++ +.-|..
T Consensus 290 -~~r---v~~p~~ 298 (670)
T 4gua_A 290 -RVS---AARPDC 298 (670)
T ss_dssp -EEE---EECCTT
T ss_pred -eee---eeCCCc
Confidence 444 344543
No 271
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=59.73 E-value=13 Score=36.06 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=37.5
Q ss_pred CCeEEEEchHHHHHhh--CCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEFLRQ--VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~--~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~ 222 (334)
++++++.+|+.+++.. ..+++||+|++|.+.. .+ .++.+.+. .++|++++.+.+
T Consensus 334 ~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~-----g~--~~~~~~l~-~~~p~~ivyvsc 389 (433)
T 1uwv_A 334 QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARA-----GA--AGVMQQII-KLEPIRIVYVSC 389 (433)
T ss_dssp CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTT-----CC--HHHHHHHH-HHCCSEEEEEES
T ss_pred CceEEEECCHHHHhhhhhhhcCCCCEEEECCCCc-----cH--HHHHHHHH-hcCCCeEEEEEC
Confidence 4899999999887653 1235799999986421 11 25666665 478999887644
No 272
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=58.19 E-value=5.4 Score=40.25 Aligned_cols=82 Identities=10% Similarity=0.018 Sum_probs=47.3
Q ss_pred CeEEEEchHHHHHhhCCCCceeEEEECCCCCC---C----------------------CCcCCCCHHHHHHHHHhcCCCc
Q 019882 162 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV---G----------------------PAQELVEKPFFDTIAKALRPGG 216 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~---g----------------------pa~~L~t~eFy~~v~~~L~~gG 216 (334)
++.++.+|.+..-. ....+||+||...+=.. . ++..-....|++.+.+.|+|||
T Consensus 311 ~i~i~~gDtL~~~~-~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG 389 (544)
T 3khk_A 311 NFGKKNADSFLDDQ-HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTG 389 (544)
T ss_dssp BCCSSSCCTTTSCS-CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEE
T ss_pred ccceeccchhcCcc-cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCc
Confidence 45557788654321 12368999999864211 0 0111111369999999999999
Q ss_pred EEEEeccchhhhh--hHHHHHHHHHHHhcC
Q 019882 217 VLCNMAESMWLHT--HLIEDMISICRETFK 244 (334)
Q Consensus 217 ilv~q~~sp~~~~--~~~~~i~~tl~~vF~ 244 (334)
.++.-..+-++.. ...+.+.+.|.+-+.
T Consensus 390 r~aiVlP~g~L~~~~~~~~~iRk~Lle~~~ 419 (544)
T 3khk_A 390 SMALLLANGSMSSNTNNEGEIRKTLVEQDL 419 (544)
T ss_dssp EEEEEEETHHHHCCGGGHHHHHHHHHHTTC
T ss_pred eEEEEecchhhhcCcchHHHHHHHHHhCCc
Confidence 9876543333222 234556666665554
No 273
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=57.07 E-value=7 Score=36.65 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.+||+++.+|.++ .. ...+|+|++=..=...+.. .....++.++++|+|||.+++
T Consensus 227 ~~rv~~~~gD~~~---~~-~~~~D~~~~~~vlh~~~d~--~~~~iL~~~~~al~pgg~lli 281 (353)
T 4a6d_A 227 EEQIDFQEGDFFK---DP-LPEADLYILARVLHDWADG--KCSHLLERIYHTCKPGGGILV 281 (353)
T ss_dssp CCSEEEEESCTTT---SC-CCCCSEEEEESSGGGSCHH--HHHHHHHHHHHHCCTTCEEEE
T ss_pred cCceeeecCcccc---CC-CCCceEEEeeeecccCCHH--HHHHHHHHHHhhCCCCCEEEE
Confidence 4789999888542 22 3458888862210000000 013578999999999998775
No 274
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=56.29 E-value=29 Score=30.43 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=25.1
Q ss_pred ceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 181 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 181 ~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
.||.+..|..=. .+ ..+++.+++.|+|||.++..
T Consensus 103 ~~d~~~~D~v~~-----~l--~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 103 RPSFTSIDVSFI-----SL--DLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp CCSEEEECCSSS-----CG--GGTHHHHHHHSCTTCEEEEE
T ss_pred CCCEEEEEEEhh-----hH--HHHHHHHHHhccCCCEEEEE
Confidence 377777776311 11 66999999999999998864
No 275
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=56.19 E-value=13 Score=34.93 Aligned_cols=54 Identities=20% Similarity=0.107 Sum_probs=34.1
Q ss_pred CCCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 160 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 160 dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
.+|++++.+|..+ ..++ . |+|++-..=..-+.. --..+++.++++|+|||.++.
T Consensus 245 ~~~v~~~~~d~~~---~~p~-~-D~v~~~~vlh~~~~~--~~~~~l~~~~~~L~pgG~l~i 298 (368)
T 3reo_A 245 FSGVEHLGGDMFD---GVPK-G-DAIFIKWICHDWSDE--HCLKLLKNCYAALPDHGKVIV 298 (368)
T ss_dssp CTTEEEEECCTTT---CCCC-C-SEEEEESCGGGBCHH--HHHHHHHHHHHHSCTTCEEEE
T ss_pred cCCCEEEecCCCC---CCCC-C-CEEEEechhhcCCHH--HHHHHHHHHHHHcCCCCEEEE
Confidence 4788999888764 2332 3 888874321000000 013589999999999998876
No 276
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=55.81 E-value=44 Score=24.95 Aligned_cols=50 Identities=20% Similarity=0.111 Sum_probs=29.1
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++.-..--+++.
T Consensus 36 ~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~-----g~~~~~~l~~~~~~~~ii~~ 85 (130)
T 3eod_A 36 LAADGVDALELLGGFTPDLMICDIAMPRMN-----GLKLLEHIRNRGDQTPVLVI 85 (130)
T ss_dssp EESCHHHHHHHHTTCCCSEEEECCC----------CHHHHHHHHHTTCCCCEEEE
T ss_pred EeCCHHHHHHHHhcCCCCEEEEecCCCCCC-----HHHHHHHHHhcCCCCCEEEE
Confidence 356666666554445799999998755422 35788888875433334443
No 277
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=50.30 E-value=2.6 Score=41.30 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=25.3
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCC
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV 193 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~ 193 (334)
.+++++.+|+.++|....+++||+|++|.+-..
T Consensus 143 ~~i~~i~~Da~~~L~~~~~~~fDvV~lDPPrr~ 175 (410)
T 3ll7_A 143 KDVNILTGDFKEYLPLIKTFHPDYIYVDPARRS 175 (410)
T ss_dssp CEEEEEESCGGGSHHHHHHHCCSEEEECCEEC-
T ss_pred CcEEEEECcHHHhhhhccCCCceEEEECCCCcC
Confidence 589999999999886532247999999986533
No 278
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=48.78 E-value=54 Score=25.38 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=30.1
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++.- ++--++.
T Consensus 51 ~~~~~~~al~~l~~~~~dlii~D~~l~~~~-----g~~~~~~l~~~~-~~~~ii~ 99 (150)
T 4e7p_A 51 QAKNGQEAIQLLEKESVDIAILDVEMPVKT-----GLEVLEWIRSEK-LETKVVV 99 (150)
T ss_dssp EESSHHHHHHHHTTSCCSEEEECSSCSSSC-----HHHHHHHHHHTT-CSCEEEE
T ss_pred EECCHHHHHHHhhccCCCEEEEeCCCCCCc-----HHHHHHHHHHhC-CCCeEEE
Confidence 455666655544345799999998755432 356788887753 4443333
No 279
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=46.51 E-value=25 Score=30.87 Aligned_cols=43 Identities=28% Similarity=0.335 Sum_probs=33.0
Q ss_pred CCceEEEeeccEEEEeeCCCceEEEEEeCC-----ceeEEEECCeEEeeccchhH
Q 019882 78 PGEAHSLKVKEILFKGKSEYQEVLVFESLA-----YGKVLVLDGIVQLTEKDECA 127 (334)
Q Consensus 78 ~~~~~~~~v~~vL~~~~S~yQ~I~V~et~~-----~G~~L~LDG~iQ~te~DEf~ 127 (334)
....++|+|.+ ..||+|.|.|... .|+.|.++|. ...+-||.+
T Consensus 41 dhLtvTwKv~d------~v~qHidI~E~~K~~~~slG~~L~i~~~-~y~DLDElI 88 (197)
T 3or8_A 41 DHLAITWKLDK------DLFQHVDIQELEKENPLALGKVLVVEGQ-RYHDLDQII 88 (197)
T ss_dssp TEEEEEEEEET------TEEEEEEEEEESCSSTTSCCSEEEETTE-EESSHHHHH
T ss_pred CcEEEEEEECC------CcEEEEEEEEcCCccccccCceEEECCe-EECCHHHHH
Confidence 45678887754 4479999998763 4899999998 777888853
No 280
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=46.49 E-value=15 Score=35.17 Aligned_cols=60 Identities=8% Similarity=0.083 Sum_probs=38.6
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCC--CcEEEEecc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRP--GGVLCNMAE 223 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~--gGilv~q~~ 223 (334)
.+++++.+|+.++.. ..+||+||+|.+=.......---.++|+.+.+.|++ ||-+..-+.
T Consensus 283 ~~I~~~~~D~~~l~~---~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 283 DVVKLKQMRLQDFKT---NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp TTEEEEECCGGGCCC---CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred CceEEEECChHHCCc---cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 479999999888642 247999999875211111111124688888888876 777665443
No 281
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=45.91 E-value=37 Score=34.12 Aligned_cols=84 Identities=12% Similarity=0.057 Sum_probs=49.6
Q ss_pred CCCeEEEEchHHHH--HhhCCCCceeEEEECCCCC--CCC-----------------CcCCCCHHHHHHHHHhcC-CCcE
Q 019882 160 DPRVRLHIGDAVEF--LRQVPRGKYDAIIVDSSDP--VGP-----------------AQELVEKPFFDTIAKALR-PGGV 217 (334)
Q Consensus 160 dpRv~viv~Dg~~f--L~~~~~~~yDvIIvD~~dp--~gp-----------------a~~L~t~eFy~~v~~~L~-~gGi 217 (334)
.++++++.+|.+.. -. ....+||+||...+=. ... +..-....|++.+.+.|+ +||.
T Consensus 275 ~~~~~I~~gDtL~~d~p~-~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr 353 (542)
T 3lkd_A 275 IENQFLHNADTLDEDWPT-QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGV 353 (542)
T ss_dssp GGGEEEEESCTTTSCSCC-SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCE
T ss_pred cCccceEecceecccccc-cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCcee
Confidence 35789999997653 11 2246899999875411 000 001112359999999999 9999
Q ss_pred EEEeccchhhh-hhHHHHHHHHHHHhcC
Q 019882 218 LCNMAESMWLH-THLIEDMISICRETFK 244 (334)
Q Consensus 218 lv~q~~sp~~~-~~~~~~i~~tl~~vF~ 244 (334)
++.-..+-++. ......+.+.|-+-+.
T Consensus 354 ~a~VlP~g~Lf~~~~~~~iRk~Lle~~~ 381 (542)
T 3lkd_A 354 MAIVLPHGVLFRGNAEGTIRKALLEEGA 381 (542)
T ss_dssp EEEEEETHHHHCCTHHHHHHHHHHHTTC
T ss_pred EEEEecchHhhCCchhHHHHHHHHhCCc
Confidence 87644433332 2234455555555544
No 282
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=45.38 E-value=42 Score=25.54 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=34.6
Q ss_pred CeEEEEchHHHHHhhCCC-CceeEEEECCCCC-CCCCcCCCCHHHHHHHHH--hcCCCcEEEE
Q 019882 162 RVRLHIGDAVEFLRQVPR-GKYDAIIVDSSDP-VGPAQELVEKPFFDTIAK--ALRPGGVLCN 220 (334)
Q Consensus 162 Rv~viv~Dg~~fL~~~~~-~~yDvIIvD~~dp-~gpa~~L~t~eFy~~v~~--~L~~gGilv~ 220 (334)
++. ...|+.+.++.... ..+|+||+|..-| .. -..++.+.+++ ....--+++.
T Consensus 31 ~v~-~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~-----~g~~~~~~l~~~~~~~~~~ii~l 87 (140)
T 3lua_A 31 DFI-EVENLKKFYSIFKDLDSITLIIMDIAFPVEK-----EGLEVLSAIRNNSRTANTPVIIA 87 (140)
T ss_dssp EEE-EECSHHHHHTTTTTCCCCSEEEECSCSSSHH-----HHHHHHHHHHHSGGGTTCCEEEE
T ss_pred cEE-EECCHHHHHHHHhcCCCCcEEEEeCCCCCCC-----cHHHHHHHHHhCcccCCCCEEEE
Confidence 344 67788888877655 6899999998755 31 12467777777 4443345444
No 283
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=45.16 E-value=96 Score=23.91 Aligned_cols=50 Identities=16% Similarity=0.041 Sum_probs=32.6
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++....--+++.
T Consensus 32 ~~~~~~~a~~~l~~~~~dliild~~l~~~~-----g~~~~~~l~~~~~~~pii~l 81 (155)
T 1qkk_A 32 SFASATEALAGLSADFAGIVISDIRMPGMD-----GLALFRKILALDPDLPMILV 81 (155)
T ss_dssp EESCHHHHHHTCCTTCCSEEEEESCCSSSC-----HHHHHHHHHHHCTTSCEEEE
T ss_pred EECCHHHHHHHHHhCCCCEEEEeCCCCCCC-----HHHHHHHHHhhCCCCCEEEE
Confidence 566777777665456799999998755322 24688888876433344443
No 284
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=44.54 E-value=55 Score=24.62 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=26.9
Q ss_pred hHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 169 DAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 169 Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
++.+.+++ ..+|+||+|..-|.+.....-..++.+.+++....--+++.
T Consensus 38 ~a~~~l~~---~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~l 86 (140)
T 2qr3_A 38 SLSTVLRE---ENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLF 86 (140)
T ss_dssp HHHHHHHH---SCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHc---CCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEE
Confidence 34445544 35999999987551100012235788888876443345543
No 285
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=44.44 E-value=50 Score=25.20 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=26.3
Q ss_pred EEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHH
Q 019882 165 LHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK 210 (334)
Q Consensus 165 viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~ 210 (334)
....|+.+.++......+|+||+|..-|... ..++.+.+++
T Consensus 35 ~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~-----g~~~~~~lr~ 75 (144)
T 3kht_A 35 EFVDNGAKALYQVQQAKYDLIILDIGLPIAN-----GFEVMSAVRK 75 (144)
T ss_dssp EEESSHHHHHHHHTTCCCSEEEECTTCGGGC-----HHHHHHHHHS
T ss_pred EEECCHHHHHHHhhcCCCCEEEEeCCCCCCC-----HHHHHHHHHh
Confidence 3455666665554445799999998755322 2467777776
No 286
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=43.66 E-value=23 Score=32.74 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=34.1
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCC---CcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRP---GGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~---gGilv~ 220 (334)
++++++.+|..+ ..+ .||+|++-..=..-+. .--..+++.++++|+| ||.++.
T Consensus 231 ~~v~~~~~d~~~---~~p--~~D~v~~~~~lh~~~d--~~~~~~l~~~~~~L~p~~~gG~l~i 286 (352)
T 1fp2_A 231 NNLTYVGGDMFT---SIP--NADAVLLKYILHNWTD--KDCLRILKKCKEAVTNDGKRGKVTI 286 (352)
T ss_dssp TTEEEEECCTTT---CCC--CCSEEEEESCGGGSCH--HHHHHHHHHHHHHHSGGGCCCEEEE
T ss_pred CCcEEEeccccC---CCC--CccEEEeehhhccCCH--HHHHHHHHHHHHhCCCCCCCcEEEE
Confidence 568999998754 232 3999987332100000 0012789999999999 998775
No 287
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=43.13 E-value=49 Score=25.13 Aligned_cols=52 Identities=13% Similarity=0.039 Sum_probs=33.3
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...|+.+.++......+|+||+|..-|.+. .-..++.+.+++.-..--+++.
T Consensus 35 ~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~---~~g~~~~~~l~~~~~~~~ii~~ 86 (136)
T 3kto_A 35 CFASAESFMRQQISDDAIGMIIEAHLEDKK---DSGIELLETLVKRGFHLPTIVM 86 (136)
T ss_dssp EESSHHHHTTSCCCTTEEEEEEETTGGGBT---THHHHHHHHHHHTTCCCCEEEE
T ss_pred EeCCHHHHHHHHhccCCCEEEEeCcCCCCC---ccHHHHHHHHHhCCCCCCEEEE
Confidence 577888888776556799999998755410 1124677777765432334443
No 288
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=42.13 E-value=87 Score=24.14 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=26.6
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhc
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKAL 212 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L 212 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++..
T Consensus 36 ~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~-----g~~~~~~l~~~~ 77 (154)
T 2rjn_A 36 TFTSPLDALEALKGTSVQLVISDMRMPEMG-----GEVFLEQVAKSY 77 (154)
T ss_dssp EESCHHHHHHHHTTSCCSEEEEESSCSSSC-----HHHHHHHHHHHC
T ss_pred EeCCHHHHHHHHhcCCCCEEEEecCCCCCC-----HHHHHHHHHHhC
Confidence 455655555443335699999998755422 246778877754
No 289
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=42.01 E-value=70 Score=24.24 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=27.6
Q ss_pred hHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 169 DAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 169 Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
++...++.. ...+|+||+|..-|... ..++.+.+++.-..--+++.
T Consensus 38 ~a~~~~~~~-~~~~dlvi~d~~l~~~~-----g~~~~~~l~~~~~~~~ii~l 83 (143)
T 3jte_A 38 EGLRIFTEN-CNSIDVVITDMKMPKLS-----GMDILREIKKITPHMAVIIL 83 (143)
T ss_dssp HHHHHHHHT-TTTCCEEEEESCCSSSC-----HHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCCCCc-----HHHHHHHHHHhCCCCeEEEE
Confidence 344555532 35799999998765422 35688888876433334443
No 290
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=40.93 E-value=44 Score=25.97 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=28.5
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++....--+++
T Consensus 43 ~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~-----g~~~~~~l~~~~~~~~ii~ 91 (153)
T 3hv2_A 43 FARDATQALQLLASREVDLVISAAHLPQMD-----GPTLLARIHQQYPSTTRIL 91 (153)
T ss_dssp EESSHHHHHHHHHHSCCSEEEEESCCSSSC-----HHHHHHHHHHHCTTSEEEE
T ss_pred EECCHHHHHHHHHcCCCCEEEEeCCCCcCc-----HHHHHHHHHhHCCCCeEEE
Confidence 445555544433234699999998755422 2568888877543333443
No 291
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=40.24 E-value=57 Score=26.54 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=31.9
Q ss_pred EEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 165 LHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 165 viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
....||.+.++......+|+||+|..-|... ..++.+.+++.-..--|++
T Consensus 35 ~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~-----g~~~~~~l~~~~~~~~ii~ 84 (184)
T 3rqi_A 35 RQAHNKDEALKLAGAEKFEFITVXLHLGNDS-----GLSLIAPLCDLQPDARILV 84 (184)
T ss_dssp EEECSHHHHHHHHTTSCCSEEEECSEETTEE-----SHHHHHHHHHHCTTCEEEE
T ss_pred EEeCCHHHHHHHHhhCCCCEEEEeccCCCcc-----HHHHHHHHHhcCCCCCEEE
Confidence 4566777766655445799999998755432 2568888877543333443
No 292
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=40.08 E-value=90 Score=24.02 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=27.6
Q ss_pred EEchHH---HHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 166 HIGDAV---EFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~---~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...|+. +.+++. ..||+||+|..-|... ..++.+.+++.- ++-.++.
T Consensus 32 ~~~~~~~a~~~l~~~--~~~dlvi~D~~l~~~~-----g~~~~~~l~~~~-~~~~ii~ 81 (151)
T 3kcn_A 32 TCESGPEALACIKKS--DPFSVIMVDMRMPGME-----GTEVIQKARLIS-PNSVYLM 81 (151)
T ss_dssp EESSHHHHHHHHHHS--CCCSEEEEESCCSSSC-----HHHHHHHHHHHC-SSCEEEE
T ss_pred EeCCHHHHHHHHHcC--CCCCEEEEeCCCCCCc-----HHHHHHHHHhcC-CCcEEEE
Confidence 344554 445443 3489999998765432 256777777654 4443333
No 293
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=39.66 E-value=53 Score=24.84 Aligned_cols=27 Identities=15% Similarity=0.011 Sum_probs=19.7
Q ss_pred CceeEEEECCCCCCCCCcCCCCHHHHHHHHHh
Q 019882 180 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA 211 (334)
Q Consensus 180 ~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~ 211 (334)
..+|+||+|..-|... ..++.+.+++.
T Consensus 59 ~~~dlvi~D~~l~~~~-----g~~~~~~l~~~ 85 (146)
T 3ilh_A 59 RWPSIICIDINMPGIN-----GWELIDLFKQH 85 (146)
T ss_dssp CCCSEEEEESSCSSSC-----HHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCC-----HHHHHHHHHHh
Confidence 5699999998765432 35788888873
No 294
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=39.14 E-value=36 Score=25.86 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=24.7
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHH
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK 210 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~ 210 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++
T Consensus 35 ~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~-----g~~~~~~l~~ 74 (140)
T 3grc_A 35 MVHSAAQALEQVARRPYAAMTVDLNLPDQD-----GVSLIRALRR 74 (140)
T ss_dssp EECSHHHHHHHHHHSCCSEEEECSCCSSSC-----HHHHHHHHHT
T ss_pred EECCHHHHHHHHHhCCCCEEEEeCCCCCCC-----HHHHHHHHHh
Confidence 345555544433234699999998765432 2567777776
No 295
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=38.81 E-value=27 Score=32.26 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=34.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCC---CcEEEE
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRP---GGVLCN 220 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~---gGilv~ 220 (334)
++++++.+|..+ ..+ .||+|++-..=...+. ---..+++.++++|+| ||.++.
T Consensus 236 ~~v~~~~~d~~~---~~~--~~D~v~~~~vlh~~~d--~~~~~~l~~~~~~L~p~~~gG~l~i 291 (358)
T 1zg3_A 236 ENLNFVGGDMFK---SIP--SADAVLLKWVLHDWND--EQSLKILKNSKEAISHKGKDGKVII 291 (358)
T ss_dssp SSEEEEECCTTT---CCC--CCSEEEEESCGGGSCH--HHHHHHHHHHHHHTGGGGGGCEEEE
T ss_pred CCcEEEeCccCC---CCC--CceEEEEcccccCCCH--HHHHHHHHHHHHhCCCCCCCcEEEE
Confidence 569999998765 232 4999997432110000 0012789999999999 997765
No 296
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=38.27 E-value=1.1e+02 Score=22.58 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=26.4
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHh
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA 211 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~ 211 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++.
T Consensus 32 ~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~-----g~~~~~~l~~~ 72 (126)
T 1dbw_A 32 MHQSAEAFLAFAPDVRNGVLVTDLRMPDMS-----GVELLRNLGDL 72 (126)
T ss_dssp EESCHHHHHHHGGGCCSEEEEEECCSTTSC-----HHHHHHHHHHT
T ss_pred EeCCHHHHHHHHhcCCCCEEEEECCCCCCC-----HHHHHHHHHhc
Confidence 456666666544335699999998755432 24677777764
No 297
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=38.18 E-value=32 Score=25.66 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=24.6
Q ss_pred EchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHh
Q 019882 167 IGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA 211 (334)
Q Consensus 167 v~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~ 211 (334)
..|+.+.++......+|+||+|..-|... ..++.+.+++.
T Consensus 33 ~~~~~~a~~~l~~~~~dlii~D~~l~~~~-----g~~~~~~l~~~ 72 (127)
T 3i42_A 33 VMSGTDALHAMSTRGYDAVFIDLNLPDTS-----GLALVKQLRAL 72 (127)
T ss_dssp ESSHHHHHHHHHHSCCSEEEEESBCSSSB-----HHHHHHHHHHS
T ss_pred ECCHHHHHHHHHhcCCCEEEEeCCCCCCC-----HHHHHHHHHhh
Confidence 44554444332224699999998755422 35688888776
No 298
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=37.62 E-value=97 Score=24.05 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=26.9
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHh
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA 211 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~ 211 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++.
T Consensus 36 ~~~~~~~al~~l~~~~~dlii~D~~l~~~~-----g~~~~~~lr~~ 76 (154)
T 3gt7_A 36 HVRNGREAVRFLSLTRPDLIISDVLMPEMD-----GYALCRWLKGQ 76 (154)
T ss_dssp EESSHHHHHHHHTTCCCSEEEEESCCSSSC-----HHHHHHHHHHS
T ss_pred EeCCHHHHHHHHHhCCCCEEEEeCCCCCCC-----HHHHHHHHHhC
Confidence 455666666554445799999998765432 24677777764
No 299
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=37.13 E-value=85 Score=24.18 Aligned_cols=50 Identities=18% Similarity=0.042 Sum_probs=30.4
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++....--+++.
T Consensus 36 ~~~~~~~a~~~l~~~~~dlii~D~~l~~~~-----g~~~~~~l~~~~~~~~ii~l 85 (153)
T 3cz5_A 36 EAADAGEAYRLYRETTPDIVVMDLTLPGPG-----GIEATRHIRQWDGAARILIF 85 (153)
T ss_dssp EESSHHHHHHHHHTTCCSEEEECSCCSSSC-----HHHHHHHHHHHCTTCCEEEE
T ss_pred EeCCHHHHHHHHhcCCCCEEEEecCCCCCC-----HHHHHHHHHHhCCCCeEEEE
Confidence 456665555433234699999998755322 25788888876433344444
No 300
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=36.91 E-value=65 Score=24.39 Aligned_cols=49 Identities=16% Similarity=0.088 Sum_probs=28.6
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...++.+.++......+|+||+|. -|... ..++.+.+++....--+++.
T Consensus 33 ~~~~~~~a~~~l~~~~~dlvi~d~-~~~~~-----g~~~~~~l~~~~~~~pii~l 81 (142)
T 2qxy_A 33 WAKNEQEAFTFLRREKIDLVFVDV-FEGEE-----SLNLIRRIREEFPDTKVAVL 81 (142)
T ss_dssp EESSHHHHHHHHTTSCCSEEEEEC-TTTHH-----HHHHHHHHHHHCTTCEEEEE
T ss_pred EECCHHHHHHHHhccCCCEEEEeC-CCCCc-----HHHHHHHHHHHCCCCCEEEE
Confidence 455555555443345799999998 55321 24677777765433334443
No 301
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=36.86 E-value=13 Score=35.84 Aligned_cols=59 Identities=7% Similarity=0.205 Sum_probs=37.4
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC--CcCCCCHHHHHHHHHhcCC--CcEEEEeccc
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP--AQELVEKPFFDTIAKALRP--GGVLCNMAES 224 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp--a~~L~t~eFy~~v~~~L~~--gGilv~q~~s 224 (334)
.+++++.+|+.++.. .++||+||+|.+ .+. ...---.++|+.+.+.|++ ||-+..-+.+
T Consensus 290 ~~I~~~~~D~~~~~~---~~~fD~Iv~NPP--Yg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 352 (393)
T 3k0b_A 290 DLITFRQLQVADFQT---EDEYGVVVANPP--YGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSY 352 (393)
T ss_dssp TCSEEEECCGGGCCC---CCCSCEEEECCC--CCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECC
T ss_pred CceEEEECChHhCCC---CCCCCEEEECCC--CccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 479999999887542 257999999874 322 1000123577777777766 7776654433
No 302
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=36.14 E-value=50 Score=24.90 Aligned_cols=48 Identities=23% Similarity=0.090 Sum_probs=27.6
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++.- ++--++
T Consensus 36 ~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~-----g~~~~~~l~~~~-~~~~ii 83 (137)
T 3hdg_A 36 SAGDGEEGERLFGLHAPDVIITDIRMPKLG-----GLEMLDRIKAGG-AKPYVI 83 (137)
T ss_dssp EESSHHHHHHHHHHHCCSEEEECSSCSSSC-----HHHHHHHHHHTT-CCCEEE
T ss_pred EECCHHHHHHHHhccCCCEEEEeCCCCCCC-----HHHHHHHHHhcC-CCCcEE
Confidence 344554444332224699999998755422 356778877654 443333
No 303
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=35.60 E-value=87 Score=23.92 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=30.2
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++. .++-.++
T Consensus 34 ~~~~~~~al~~~~~~~~dlvllD~~lp~~~-----g~~l~~~l~~~-~~~~~ii 81 (141)
T 3cu5_A 34 QADDGINAIQIALKHPPNVLLTDVRMPRMD-----GIELVDNILKL-YPDCSVI 81 (141)
T ss_dssp EESSHHHHHHHHTTSCCSEEEEESCCSSSC-----HHHHHHHHHHH-CTTCEEE
T ss_pred ecccHHHHHHHHhcCCCCEEEEeCCCCCCC-----HHHHHHHHHhh-CCCCcEE
Confidence 577777766554345799999998755422 24677777764 3443333
No 304
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=33.69 E-value=1.1e+02 Score=23.43 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=19.0
Q ss_pred CceeEEEECCCCCCCCCcCCCCHHHHHHHHH
Q 019882 180 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAK 210 (334)
Q Consensus 180 ~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~ 210 (334)
..+|+||+|..-|... ..++.+.+++
T Consensus 58 ~~~dliilD~~l~~~~-----g~~~~~~lr~ 83 (152)
T 3heb_A 58 GRAQLVLLDLNLPDMT-----GIDILKLVKE 83 (152)
T ss_dssp TCBEEEEECSBCSSSB-----HHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCc-----HHHHHHHHHh
Confidence 5799999998765432 3567888876
No 305
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=32.86 E-value=56 Score=24.44 Aligned_cols=46 Identities=11% Similarity=0.124 Sum_probs=28.0
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCc
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGG 216 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gG 216 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++...+.-
T Consensus 33 ~~~~~~~a~~~~~~~~~dlvllD~~l~~~~-----g~~~~~~l~~~~~~~~ 78 (130)
T 1dz3_A 33 TAYNGQDCLQMLEEKRPDILLLDIIMPHLD-----GLAVLERIRAGFEHQP 78 (130)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEESCCSSSC-----HHHHHHHHHHHCSSCC
T ss_pred EeCCHHHHHHHHhcCCCCEEEEecCCCCCC-----HHHHHHHHHhcCCCCC
Confidence 355665555433223699999998755422 2467888877544544
No 306
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=32.21 E-value=17 Score=34.66 Aligned_cols=60 Identities=17% Similarity=0.306 Sum_probs=38.1
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC--CcCCCCHHHHHHHHHhcCC--CcEEEEeccch
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP--AQELVEKPFFDTIAKALRP--GGVLCNMAESM 225 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp--a~~L~t~eFy~~v~~~L~~--gGilv~q~~sp 225 (334)
.+++++.+|+.++.. .++||+||+|.+ .+. ...---.++|+.+.+.|++ ||.+..-+.++
T Consensus 284 ~~i~~~~~D~~~l~~---~~~~D~Iv~NPP--yg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 347 (385)
T 3ldu_A 284 EYIEFNVGDATQFKS---EDEFGFIITNPP--YGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYE 347 (385)
T ss_dssp GGEEEEECCGGGCCC---SCBSCEEEECCC--CCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCT
T ss_pred CceEEEECChhhcCc---CCCCcEEEECCC--CcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCH
Confidence 479999999887542 357999999875 321 1000114578877777776 66665544443
No 307
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=31.48 E-value=60 Score=24.52 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=23.8
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHH
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK 210 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~ 210 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++
T Consensus 36 ~~~~~~~a~~~l~~~~~dlii~d~~l~~~~-----g~~~~~~l~~ 75 (142)
T 3cg4_A 36 SADSGGQCIDLLKKGFSGVVLLDIMMPGMD-----GWDTIRAILD 75 (142)
T ss_dssp EESSHHHHHHHHHTCCCEEEEEESCCSSSC-----HHHHHHHHHH
T ss_pred EeCCHHHHHHHHHhcCCCEEEEeCCCCCCC-----HHHHHHHHHh
Confidence 344444444332234699999998755422 2467777776
No 308
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=31.27 E-value=50 Score=24.96 Aligned_cols=50 Identities=8% Similarity=-0.119 Sum_probs=30.4
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...|+.+.++......+|+||+|..-|.... .++.+.+++.-..--+++.
T Consensus 44 ~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g-----~~~~~~l~~~~~~~~ii~~ 93 (135)
T 3snk_A 44 VSETDDFLKGPPADTRPGIVILDLGGGDLLG-----KPGIVEARALWATVPLIAV 93 (135)
T ss_dssp EECGGGGGGCCCTTCCCSEEEEEEETTGGGG-----STTHHHHHGGGTTCCEEEE
T ss_pred EeccHHHHHHHHhccCCCEEEEeCCCCCchH-----HHHHHHHHhhCCCCcEEEE
Confidence 5567777666554567999999986554322 2466676665433334443
No 309
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=30.69 E-value=90 Score=23.01 Aligned_cols=49 Identities=16% Similarity=0.057 Sum_probs=29.1
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++. .+--+++.
T Consensus 31 ~~~~~~~al~~~~~~~~dlii~D~~~p~~~-----g~~~~~~lr~~-~~~~ii~~ 79 (120)
T 3f6p_A 31 CAHDGNEAVEMVEELQPDLILLDIMLPNKD-----GVEVCREVRKK-YDMPIIML 79 (120)
T ss_dssp EESSHHHHHHHHHTTCCSEEEEETTSTTTH-----HHHHHHHHHTT-CCSCEEEE
T ss_pred EeCCHHHHHHHHhhCCCCEEEEeCCCCCCC-----HHHHHHHHHhc-CCCCEEEE
Confidence 356666665543335799999999766432 24567777653 23334443
No 310
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=30.33 E-value=63 Score=24.09 Aligned_cols=41 Identities=15% Similarity=0.026 Sum_probs=24.7
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHh
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA 211 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~ 211 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++.
T Consensus 32 ~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~-----g~~~~~~l~~~ 72 (133)
T 3nhm_A 32 TAADGASGLQQALAHPPDVLISDVNMDGMD-----GYALCGHFRSE 72 (133)
T ss_dssp EESSHHHHHHHHHHSCCSEEEECSSCSSSC-----HHHHHHHHHHS
T ss_pred EECCHHHHHHHHhcCCCCEEEEeCCCCCCC-----HHHHHHHHHhC
Confidence 344555444333224699999998755422 24677777765
No 311
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=30.16 E-value=69 Score=24.18 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=25.8
Q ss_pred EEchHHHHHhhCCC-CceeEEEECCCCCCCCCcCCCCHHHHHHHHHh
Q 019882 166 HIGDAVEFLRQVPR-GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA 211 (334)
Q Consensus 166 iv~Dg~~fL~~~~~-~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~ 211 (334)
...++.+.++.... ..+|+||+|..-|... ..++.+.+++.
T Consensus 44 ~~~~~~~al~~l~~~~~~dlvilD~~l~~~~-----g~~~~~~l~~~ 85 (138)
T 2b4a_A 44 VHPSGSAFFQHRSQLSTCDLLIVSDQLVDLS-----IFSLLDIVKEQ 85 (138)
T ss_dssp EESSHHHHHHTGGGGGSCSEEEEETTCTTSC-----HHHHHHHHTTS
T ss_pred EeCCHHHHHHHHHhCCCCCEEEEeCCCCCCC-----HHHHHHHHHhh
Confidence 45666666654433 4699999998765322 24567777663
No 312
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=30.01 E-value=1.2e+02 Score=24.77 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=29.2
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhc
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKAL 212 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L 212 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++.-
T Consensus 33 ~~~~~~~al~~~~~~~~dlvl~D~~lp~~~-----g~~~~~~l~~~~ 74 (208)
T 1yio_A 33 TFDCASTFLEHRRPEQHGCLVLDMRMPGMS-----GIELQEQLTAIS 74 (208)
T ss_dssp EESSHHHHHHHCCTTSCEEEEEESCCSSSC-----HHHHHHHHHHTT
T ss_pred EcCCHHHHHHhhhccCCCEEEEeCCCCCCC-----HHHHHHHHHhcC
Confidence 567788877765556799999998766432 246777777653
No 313
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=29.99 E-value=86 Score=23.50 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=22.1
Q ss_pred hHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHh
Q 019882 169 DAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA 211 (334)
Q Consensus 169 Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~ 211 (334)
++.+.+++ ..+|+||+|..-|... ..++.+.+++.
T Consensus 45 ~a~~~l~~---~~~dlii~d~~l~~~~-----g~~~~~~l~~~ 79 (143)
T 3cnb_A 45 DAGDLLHT---VKPDVVMLDLMMVGMD-----GFSICHRIKST 79 (143)
T ss_dssp HHHHHHHH---TCCSEEEEETTCTTSC-----HHHHHHHHHTS
T ss_pred HHHHHHHh---cCCCEEEEecccCCCc-----HHHHHHHHHhC
Confidence 34444544 3599999998755422 24677777763
No 314
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=29.69 E-value=77 Score=23.83 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=27.7
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++. .++--++
T Consensus 34 ~~~~~~~al~~~~~~~~dlvilD~~lp~~~-----g~~~~~~l~~~-~~~~~ii 81 (133)
T 3b2n_A 34 DTDNGLDAMKLIEEYNPNVVILDIEMPGMT-----GLEVLAEIRKK-HLNIKVI 81 (133)
T ss_dssp EESCHHHHHHHHHHHCCSEEEECSSCSSSC-----HHHHHHHHHHT-TCSCEEE
T ss_pred EcCCHHHHHHHHhhcCCCEEEEecCCCCCC-----HHHHHHHHHHH-CCCCcEE
Confidence 345555544432223599999998755422 24677888774 3444333
No 315
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=29.57 E-value=32 Score=35.65 Aligned_cols=63 Identities=14% Similarity=0.300 Sum_probs=37.9
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCCCCCCC--CcCCCCHHHHHHHHHhc---CCCcEEEEeccch
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP--AQELVEKPFFDTIAKAL---RPGGVLCNMAESM 225 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gp--a~~L~t~eFy~~v~~~L---~~gGilv~q~~sp 225 (334)
.++++..+|+.++......++||+||.+.+ .|. ...---.++|+.+.+.| .+||-+.+-+.++
T Consensus 283 ~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPP--YG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~~~ 350 (703)
T 3v97_A 283 ELITFEVKDVAQLTNPLPKGPYGTVLSNPP--YGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSASP 350 (703)
T ss_dssp GGEEEEECCGGGCCCSCTTCCCCEEEECCC--CCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCH
T ss_pred CceEEEECChhhCccccccCCCCEEEeCCC--ccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeCCH
Confidence 469999999988532221237999999874 331 11101145677665554 4798887655443
No 316
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=29.30 E-value=86 Score=23.19 Aligned_cols=50 Identities=6% Similarity=-0.043 Sum_probs=28.4
Q ss_pred EchHHHHHhhCCCC-ceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 167 IGDAVEFLRQVPRG-KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 167 v~Dg~~fL~~~~~~-~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
..++.+.++..... .+|+||+|..-|.+ .-..++.+.+++.-..--+++.
T Consensus 35 ~~~~~~a~~~l~~~~~~dlvi~d~~l~~~----~~g~~~~~~l~~~~~~~~ii~~ 85 (132)
T 2rdm_A 35 VSSGAKAIEMLKSGAAIDGVVTDIRFCQP----PDGWQVARVAREIDPNMPIVYI 85 (132)
T ss_dssp ESSHHHHHHHHHTTCCCCEEEEESCCSSS----SCHHHHHHHHHHHCTTCCEEEE
T ss_pred ECCHHHHHHHHHcCCCCCEEEEeeeCCCC----CCHHHHHHHHHhcCCCCCEEEE
Confidence 55555544433223 69999999875531 1124677887776433344443
No 317
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=28.78 E-value=78 Score=24.71 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=30.0
Q ss_pred EEchHHHHHhhCCCC--ceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 166 HIGDAVEFLRQVPRG--KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~--~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...|+.+.++..... .+|+||+|..-|... ..++.+.+++.-..--+++.
T Consensus 66 ~~~~~~~al~~l~~~~~~~dliilD~~l~~~~-----g~~~~~~lr~~~~~~~ii~l 117 (157)
T 3hzh_A 66 TAADGEEAVIKYKNHYPNIDIVTLXITMPKMD-----GITCLSNIMEFDKNARVIMI 117 (157)
T ss_dssp EESSHHHHHHHHHHHGGGCCEEEECSSCSSSC-----HHHHHHHHHHHCTTCCEEEE
T ss_pred EECCHHHHHHHHHhcCCCCCEEEEeccCCCcc-----HHHHHHHHHhhCCCCcEEEE
Confidence 566665555443223 699999998755422 35678888765533344443
No 318
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=28.74 E-value=76 Score=22.93 Aligned_cols=42 Identities=24% Similarity=0.247 Sum_probs=24.7
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhc
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKAL 212 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L 212 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++.-
T Consensus 30 ~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~-----g~~~~~~l~~~~ 71 (116)
T 3a10_A 30 TAENGEEALKKFFSGNYDLVILDIEMPGIS-----GLEVAGEIRKKK 71 (116)
T ss_dssp EESSHHHHHHHHHHSCCSEEEECSCCSSSC-----HHHHHHHHHHHC
T ss_pred EeCCHHHHHHHHhcCCCCEEEEECCCCCCC-----HHHHHHHHHccC
Confidence 455555544432224699999998755422 245677776653
No 319
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=28.59 E-value=41 Score=25.18 Aligned_cols=41 Identities=12% Similarity=0.091 Sum_probs=26.6
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHh
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA 211 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~ 211 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++.
T Consensus 31 ~~~~~~~al~~l~~~~~dlvllD~~~p~~~-----g~~~~~~l~~~ 71 (122)
T 3gl9_A 31 EAENGQIALEKLSEFTPDLIVLXIMMPVMD-----GFTVLKKLQEK 71 (122)
T ss_dssp EESSHHHHHHHHTTBCCSEEEECSCCSSSC-----HHHHHHHHHTS
T ss_pred EeCCHHHHHHHHHhcCCCEEEEeccCCCCc-----HHHHHHHHHhc
Confidence 566776666554445799999998766432 24566666543
No 320
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=28.57 E-value=52 Score=31.69 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=25.5
Q ss_pred CCCCeEEEEchHHHHHhhCCCCceeEEEECCCC
Q 019882 159 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD 191 (334)
Q Consensus 159 ~dpRv~viv~Dg~~fL~~~~~~~yDvIIvD~~d 191 (334)
++|+|+.+.+|++.+... ...+|+|+.|...
T Consensus 250 ~~~~V~~~~~d~~~~~~~--~~~~D~vvsDm~~ 280 (375)
T 4auk_A 250 DTGQVTWLREDGFKFRPT--RSNISWMVCDMVE 280 (375)
T ss_dssp TTTCEEEECSCTTTCCCC--SSCEEEEEECCSS
T ss_pred cCCCeEEEeCccccccCC--CCCcCEEEEcCCC
Confidence 479999999999987643 3579999999864
No 321
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=28.50 E-value=1.1e+02 Score=22.75 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=21.9
Q ss_pred HHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHh
Q 019882 170 AVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA 211 (334)
Q Consensus 170 g~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~ 211 (334)
+...+.+. ..+|+||+|..-|... ..++.+.+++.
T Consensus 43 a~~~~~~~--~~~dlvi~D~~l~~~~-----g~~~~~~l~~~ 77 (136)
T 3hdv_A 43 ARLYLHYQ--KRIGLMITDLRMQPES-----GLDLIRTIRAS 77 (136)
T ss_dssp HHHHHHHC--TTEEEEEECSCCSSSC-----HHHHHHHHHTS
T ss_pred HHHHHHhC--CCCcEEEEeccCCCCC-----HHHHHHHHHhc
Confidence 33444442 3499999998765432 24677777765
No 322
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=28.49 E-value=75 Score=24.20 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=23.7
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHH
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK 210 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~ 210 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++
T Consensus 37 ~~~~~~~a~~~l~~~~~dlii~d~~l~~~~-----g~~~~~~l~~ 76 (147)
T 2zay_A 37 QCGNAIEAVPVAVKTHPHLIITEANMPKIS-----GMDLFNSLKK 76 (147)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEESCCSSSC-----HHHHHHHHHT
T ss_pred EeCCHHHHHHHHHcCCCCEEEEcCCCCCCC-----HHHHHHHHHc
Confidence 344554444332223699999998655322 2467777776
No 323
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=27.84 E-value=38 Score=30.77 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=29.6
Q ss_pred ceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEEecc
Q 019882 181 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 223 (334)
Q Consensus 181 ~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~ 223 (334)
.||+||++-... .-.+.+..+.+++-.+.||-++...+
T Consensus 50 ~yDvIIl~d~~~-----~~l~~~~~~~L~~yV~~GGgLi~~gG 87 (259)
T 3rht_A 50 KQDLVILSDYPA-----ERMTAQAIDQLVTMVKAGCGLVMLGG 87 (259)
T ss_dssp TCSEEEEESCCG-----GGBCHHHHHHHHHHHHTTCEEEEECS
T ss_pred cCCEEEEcCCcc-----ccCCHHHHHHHHHHHHhCCeEEEecC
Confidence 699999974321 23578899999999999999887764
No 324
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=27.81 E-value=79 Score=22.96 Aligned_cols=50 Identities=18% Similarity=-0.029 Sum_probs=27.9
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++.-..--+++.
T Consensus 29 ~~~~~~~a~~~~~~~~~dlil~D~~l~~~~-----g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 29 DAEDAKEADYYLNEHIPDIAIVDLGLPDED-----GLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp EESSHHHHHHHHHHSCCSEEEECSCCSSSC-----HHHHHHHHHHTTCCSCEEEE
T ss_pred EeCCHHHHHHHHhccCCCEEEEecCCCCCC-----HHHHHHHHHhcCCCCCEEEE
Confidence 445554444322223699999998765432 24677777765433344443
No 325
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=27.71 E-value=71 Score=24.63 Aligned_cols=48 Identities=10% Similarity=0.002 Sum_probs=28.0
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++. .++--++
T Consensus 46 ~~~~~~~a~~~l~~~~~dlii~d~~l~~~~-----g~~~~~~l~~~-~~~~~ii 93 (152)
T 3eul_A 46 EADDGAAALELIKAHLPDVALLDYRMPGMD-----GAQVAAAVRSY-ELPTRVL 93 (152)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEETTCSSSC-----HHHHHHHHHHT-TCSCEEE
T ss_pred EeCCHHHHHHHHHhcCCCEEEEeCCCCCCC-----HHHHHHHHHhc-CCCCeEE
Confidence 355555544432224699999998755422 35677887765 3443333
No 326
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=27.45 E-value=1.7e+02 Score=21.54 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=19.6
Q ss_pred CceeEEEECCCCCCCCCcCCCCHHHHHHHHHhc
Q 019882 180 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKAL 212 (334)
Q Consensus 180 ~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L 212 (334)
..+|+||+|..-|... ..++.+.+++.-
T Consensus 54 ~~~dlvi~d~~~~~~~-----g~~~~~~l~~~~ 81 (140)
T 1k68_A 54 SRPDLILLXLNLPKKD-----GREVLAEIKSDP 81 (140)
T ss_dssp CCCSEEEECSSCSSSC-----HHHHHHHHHHST
T ss_pred CCCcEEEEecCCCccc-----HHHHHHHHHcCc
Confidence 4799999998755322 246778887753
No 327
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=27.26 E-value=84 Score=22.98 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=24.6
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHh
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA 211 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~ 211 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++.
T Consensus 32 ~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~-----g~~~~~~l~~~ 72 (123)
T 1xhf_A 32 EATDGAEMHQILSEYDINLVIMDINLPGKN-----GLLLARELREQ 72 (123)
T ss_dssp EESSHHHHHHHHHHSCCSEEEECSSCSSSC-----HHHHHHHHHHH
T ss_pred EeCCHHHHHHHHhcCCCCEEEEcCCCCCCC-----HHHHHHHHHhC
Confidence 345555444332224699999998765432 24677777765
No 328
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=27.05 E-value=1.4e+02 Score=22.90 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=25.2
Q ss_pred EEchHHHHHhhCCC-CceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 166 HIGDAVEFLRQVPR-GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 166 iv~Dg~~fL~~~~~-~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
...++.+.++.... ..+|+||+|..-|.. -..++.+.+++. .++--++
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~-----~g~~~~~~l~~~-~~~~~ii 82 (154)
T 2qsj_A 34 GAETVSDALAFLEADNTVDLILLDVNLPDA-----EAIDGLVRLKRF-DPSNAVA 82 (154)
T ss_dssp EESSHHHHHHHHHTTCCCSEEEECC-----------CHHHHHHHHHH-CTTSEEE
T ss_pred EecCHHHHHHHHhccCCCCEEEEeCCCCCC-----chHHHHHHHHHh-CCCCeEE
Confidence 34444444433222 469999999865432 235788888876 3443333
No 329
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=26.96 E-value=58 Score=24.82 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=26.1
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHh
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA 211 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~ 211 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++.
T Consensus 33 ~~~~~~~al~~~~~~~~dlvl~D~~lp~~~-----g~~~~~~lr~~ 73 (136)
T 3t6k_A 33 RAASGEEALQQIYKNLPDALICDVLLPGID-----GYTLCKRVRQH 73 (136)
T ss_dssp EESSHHHHHHHHHHSCCSEEEEESCCSSSC-----HHHHHHHHHHS
T ss_pred EeCCHHHHHHHHHhCCCCEEEEeCCCCCCC-----HHHHHHHHHcC
Confidence 455666655443234699999998765432 24677777764
No 330
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=26.27 E-value=88 Score=23.74 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=27.4
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++. .+.-.++
T Consensus 33 ~~~~~~~a~~~l~~~~~dlvllD~~l~~~~-----g~~l~~~l~~~-~~~~~ii 80 (137)
T 3cfy_A 33 HVETGRDAIQFIERSKPQLIILDLKLPDMS-----GEDVLDWINQN-DIPTSVI 80 (137)
T ss_dssp EESSHHHHHHHHHHHCCSEEEECSBCSSSB-----HHHHHHHHHHT-TCCCEEE
T ss_pred EeCCHHHHHHHHHhcCCCEEEEecCCCCCC-----HHHHHHHHHhc-CCCCCEE
Confidence 455555544432223699999998755432 24677777765 3443333
No 331
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=26.26 E-value=78 Score=23.93 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=22.6
Q ss_pred CceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCC-cEEEE
Q 019882 180 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPG-GVLCN 220 (334)
Q Consensus 180 ~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~g-Gilv~ 220 (334)
..||+||+|..-|... ..++.+.+++...+. -+++.
T Consensus 51 ~~~dlvllD~~mp~~~-----G~~~~~~lr~~~~~~~~ii~l 87 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVD-----GLLSTKMIRRDLGYTSPIVAL 87 (133)
T ss_dssp CCCSEEEECSCCSSSC-----HHHHHHHHHHHSCCCSCEEEE
T ss_pred CCCCEEEEeCCCCCCC-----hHHHHHHHHhhcCCCCCEEEE
Confidence 4699999998766432 246777777654443 34443
No 332
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=26.00 E-value=54 Score=24.44 Aligned_cols=42 Identities=7% Similarity=-0.048 Sum_probs=25.4
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhc
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKAL 212 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L 212 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++.-
T Consensus 35 ~~~~~~~a~~~l~~~~~dlii~d~~l~~~~-----g~~~~~~l~~~~ 76 (132)
T 3lte_A 35 IAHNGFDAGIKLSTFEPAIMTLDLSMPKLD-----GLDVIRSLRQNK 76 (132)
T ss_dssp EESSHHHHHHHHHHTCCSEEEEESCBTTBC-----HHHHHHHHHTTT
T ss_pred EeCCHHHHHHHHHhcCCCEEEEecCCCCCC-----HHHHHHHHHhcC
Confidence 445555544433234699999998765422 246777777653
No 333
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=25.96 E-value=79 Score=23.09 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=23.8
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHH
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK 210 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~ 210 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~-----g~~~~~~l~~ 70 (122)
T 1zgz_A 31 VTASGAGLREIMQNQSVDLILLDINLPDEN-----GLMLTRALRE 70 (122)
T ss_dssp EESSHHHHHHHHHHSCCSEEEEESCCSSSC-----HHHHHHHHHT
T ss_pred EecCHHHHHHHHhcCCCCEEEEeCCCCCCC-----hHHHHHHHHh
Confidence 345555444322224699999998765432 2467777776
No 334
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=25.82 E-value=1.9e+02 Score=21.10 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=24.7
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHH
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK 210 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~ 210 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++
T Consensus 34 ~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~-----g~~l~~~l~~ 73 (128)
T 1jbe_A 34 EAEDGVDALNKLQAGGYGFVISDWNMPNMD-----GLELLKTIRA 73 (128)
T ss_dssp EESSHHHHHHHHTTCCCCEEEEESCCSSSC-----HHHHHHHHHC
T ss_pred eeCCHHHHHHHHHhcCCCEEEEeCCCCCCC-----HHHHHHHHHh
Confidence 345565555443335699999998765432 2456677665
No 335
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=25.59 E-value=27 Score=31.55 Aligned_cols=26 Identities=12% Similarity=0.417 Sum_probs=20.1
Q ss_pred CCeEEEEchHHHHHhhCCCCceeEEEECCC
Q 019882 161 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSS 190 (334)
Q Consensus 161 pRv~viv~Dg~~fL~~~~~~~yDvIIvD~~ 190 (334)
++++++.+|+.++ .. ..||+|+.+.+
T Consensus 77 ~~v~~~~~D~~~~--~~--~~fD~vv~nlp 102 (285)
T 1zq9_A 77 SKLQVLVGDVLKT--DL--PFFDTCVANLP 102 (285)
T ss_dssp GGEEEEESCTTTS--CC--CCCSEEEEECC
T ss_pred CceEEEEcceecc--cc--hhhcEEEEecC
Confidence 6899999998764 22 37999999764
No 336
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=25.57 E-value=84 Score=23.75 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=27.4
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++.. ++..++
T Consensus 29 ~~~~~~~a~~~~~~~~~dlvl~D~~lp~~~-----g~~~~~~l~~~~-~~~~ii 76 (139)
T 2jk1_A 29 TAQGAEAAIAILEEEWVQVIICDQRMPGRT-----GVDFLTEVRERW-PETVRI 76 (139)
T ss_dssp EESSHHHHHHHHHHSCEEEEEEESCCSSSC-----HHHHHHHHHHHC-TTSEEE
T ss_pred EcCCHHHHHHHHhcCCCCEEEEeCCCCCCc-----HHHHHHHHHHhC-CCCcEE
Confidence 455555444322123599999998765322 246777777653 444333
No 337
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=25.17 E-value=1.2e+02 Score=22.31 Aligned_cols=48 Identities=19% Similarity=0.090 Sum_probs=29.8
Q ss_pred EEEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 165 LHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 165 viv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
....++.+.+...... +|+||+|..-|... ..++.+.+++.- ++--++
T Consensus 31 ~~~~~~~~~~~~~~~~-~dlvi~D~~l~~~~-----g~~~~~~l~~~~-~~~~ii 78 (135)
T 3eqz_A 31 EAFQHPRAFLTLSLNK-QDIIILDLMMPDMD-----GIEVIRHLAEHK-SPASLI 78 (135)
T ss_dssp EEESCHHHHTTSCCCT-TEEEEEECCTTTTH-----HHHHHHHHHHTT-CCCEEE
T ss_pred eeecCHHHHHHhhccC-CCEEEEeCCCCCCC-----HHHHHHHHHhCC-CCCCEE
Confidence 3456677777655444 99999998765422 246777777643 443333
No 338
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=25.16 E-value=1.2e+02 Score=22.63 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=24.9
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHh
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA 211 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~ 211 (334)
...|+.+.++......+|+||+|..-|... ..++.+.+++.
T Consensus 32 ~~~~~~~al~~~~~~~~dlvl~D~~l~~~~-----g~~~~~~l~~~ 72 (132)
T 3crn_A 32 IAATAGEGLAKIENEFFNLALFXIKLPDME-----GTELLEKAHKL 72 (132)
T ss_dssp EESSHHHHHHHHHHSCCSEEEECSBCSSSB-----HHHHHHHHHHH
T ss_pred EeCCHHHHHHHHhcCCCCEEEEecCCCCCc-----hHHHHHHHHhh
Confidence 455655554432224699999998655322 24677777664
No 339
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=24.98 E-value=1.1e+02 Score=22.30 Aligned_cols=48 Identities=10% Similarity=0.112 Sum_probs=27.4
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++. .++--++
T Consensus 32 ~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~-----g~~~~~~l~~~-~~~~~ii 79 (124)
T 1srr_A 32 QAANGLQALDIVTKERPDLVLLDMKIPGMD-----GIEILKRMKVI-DENIRVI 79 (124)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEESCCTTCC-----HHHHHHHHHHH-CTTCEEE
T ss_pred EeCCHHHHHHHHhccCCCEEEEecCCCCCC-----HHHHHHHHHHh-CCCCCEE
Confidence 455554444332223699999998755432 24677777765 3444333
No 340
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=24.54 E-value=24 Score=31.09 Aligned_cols=56 Identities=14% Similarity=0.033 Sum_probs=32.3
Q ss_pred EEEchHHHHH--hhCCCCceeEEEECCCC-CCCCCcCCCCHHHHHHHHHhcCCCcEEEEe
Q 019882 165 LHIGDAVEFL--RQVPRGKYDAIIVDSSD-PVGPAQELVEKPFFDTIAKALRPGGVLCNM 221 (334)
Q Consensus 165 viv~Dg~~fL--~~~~~~~yDvIIvD~~d-p~gpa~~L~t~eFy~~v~~~L~~gGilv~q 221 (334)
++.+|..+.. ......+||+|+.=..- ...+... --...++.+++.|+|||.++..
T Consensus 138 ~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~-~~~~~l~~i~r~LKPGG~li~~ 196 (263)
T 2a14_A 138 VLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLD-AYRAALCNLASLLKPGGHLVTT 196 (263)
T ss_dssp EEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHH-HHHHHHHHHHTTEEEEEEEEEE
T ss_pred EEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHH-HHHHHHHHHHHHcCCCcEEEEE
Confidence 7788865521 11113579999974320 0000000 0035778888999999999864
No 341
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=23.92 E-value=73 Score=23.89 Aligned_cols=49 Identities=16% Similarity=0.019 Sum_probs=27.7
Q ss_pred EchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 167 IGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 167 v~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
..++.+.++......+|+||+|..-|.+ .-..++.+.+++. ..--+++.
T Consensus 40 ~~~~~~a~~~~~~~~~dlii~d~~~~~~----~~g~~~~~~l~~~-~~~~ii~l 88 (140)
T 3cg0_A 40 FDNGEEAVRCAPDLRPDIALVDIMLCGA----LDGVETAARLAAG-CNLPIIFI 88 (140)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEESSCCSS----SCHHHHHHHHHHH-SCCCEEEE
T ss_pred ECCHHHHHHHHHhCCCCEEEEecCCCCC----CCHHHHHHHHHhC-CCCCEEEE
Confidence 5555444433222359999999875521 1124788888877 33344443
No 342
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=22.97 E-value=79 Score=30.32 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=40.0
Q ss_pred CceeEEEECCCC--CCCCCcCCCCHHHHHHHHHhcCCCcEEEEeccchhhhhhHHHHHHHHHHHhc
Q 019882 180 GKYDAIIVDSSD--PVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETF 243 (334)
Q Consensus 180 ~~yDvIIvD~~d--p~gpa~~L~t~eFy~~v~~~L~~gGilv~q~~sp~~~~~~~~~i~~tl~~vF 243 (334)
...|++|+|++- +..++..-...+|.+.+.+.++.||.++.-+-+ ....++++..+.+..
T Consensus 178 ~~~D~LI~EsTy~~~~h~~~~~~~~~l~~~i~~~~~~gg~vlIp~fa----~gR~qell~~l~~~~ 239 (431)
T 3iek_A 178 PLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFA----VERAQEILYVLYTHG 239 (431)
T ss_dssp CCCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCT----TTHHHHHHHHHHHHG
T ss_pred CCccEEEEEcccCCcCCCChHHHHHHHHHHHHHHHHcCCeEEEEecc----chHHHHHHHHHHHHH
Confidence 458999999984 333343445577888999999999988874433 223455556666554
No 343
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=22.53 E-value=76 Score=23.71 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=27.5
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
...++.+.+.......+|+||+|..-|... ..++.+.+++.-..--+++
T Consensus 32 ~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~-----g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 32 TASDGEEALKKAETEKPDLIVLDVMLPKLD-----GIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEESSCSSSC-----HHHHHHHHHHTTCCCCEEE
T ss_pred EecCHHHHHHHHhhcCCCEEEEecCCCCCC-----HHHHHHHHHcCCCCCCEEE
Confidence 455555544332223599999998765432 2467777776533223444
No 344
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=22.17 E-value=65 Score=24.38 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=22.0
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhc
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKAL 212 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L 212 (334)
...|+.+.++......+|+||+|..-|.... .++.+.+++.-
T Consensus 31 ~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g-----~~~~~~l~~~~ 72 (140)
T 3n53_A 31 ESKNEKEALEQIDHHHPDLVILDMDIIGENS-----PNLCLKLKRSK 72 (140)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEETTC-----------CHHHHHHTST
T ss_pred EeCCHHHHHHHHhcCCCCEEEEeCCCCCCcH-----HHHHHHHHcCc
Confidence 3445554444332246999999987554322 24666666543
No 345
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=22.16 E-value=89 Score=23.82 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=28.6
Q ss_pred EEchHHHHHhhCCCC-ceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEEE
Q 019882 166 HIGDAVEFLRQVPRG-KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~-~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv~ 220 (334)
...|+.+.++..... .+|+||+|..-|... ..++.+.+++.- +-.+++.
T Consensus 44 ~~~~~~~al~~l~~~~~~dlvilD~~l~~~~-----g~~~~~~lr~~~-~~~iiil 93 (145)
T 3kyj_B 44 QAANGQEALDKLAAQPNVDLILLDIEMPVMD-----GMEFLRHAKLKT-RAKICML 93 (145)
T ss_dssp EESSHHHHHHHHHHCTTCCEEEECTTSCCCT-----TCHHHHHHHHHC-CCEEC-C
T ss_pred EECCHHHHHHHHhcCCCCCEEEEeCCCCCCC-----HHHHHHHHHhcC-CCCeEEE
Confidence 466666555433223 699999998765432 236777777653 3444443
No 346
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=21.78 E-value=1.2e+02 Score=22.41 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=26.4
Q ss_pred hHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCcEEE
Q 019882 169 DAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 219 (334)
Q Consensus 169 Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gGilv 219 (334)
++.+.+++ ..+|+||+|..-|... ..++.+.+++. .++--++
T Consensus 37 ~a~~~~~~---~~~dlii~d~~l~~~~-----g~~~~~~l~~~-~~~~~ii 78 (134)
T 3f6c_A 37 SAVQRVET---LKPDIVIIDVDIPGVN-----GIQVLETLRKR-QYSGIII 78 (134)
T ss_dssp THHHHHHH---HCCSEEEEETTCSSSC-----HHHHHHHHHHT-TCCSEEE
T ss_pred HHHHHHHh---cCCCEEEEecCCCCCC-----hHHHHHHHHhc-CCCCeEE
Confidence 45566654 3599999998765432 25678888765 3444333
No 347
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=21.70 E-value=1e+02 Score=28.17 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=34.0
Q ss_pred CCeEEEEchHHHH---HhhC-CCCcee-----EEEECCCCCCCCCcCCCC----HHHHHHHHHhcCCCcEEEEec
Q 019882 161 PRVRLHIGDAVEF---LRQV-PRGKYD-----AIIVDSSDPVGPAQELVE----KPFFDTIAKALRPGGVLCNMA 222 (334)
Q Consensus 161 pRv~viv~Dg~~f---L~~~-~~~~yD-----vIIvD~~dp~gpa~~L~t----~eFy~~v~~~L~~gGilv~q~ 222 (334)
.+++++.+|.++. +... ..+.|| +|++-+. ...|-. ...++.+.+.|+|||+++...
T Consensus 131 ~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~av-----LH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 131 GRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAI-----VHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp SEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESC-----GGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred CcEEEEEecccChhhhhcccccccccCcCCcchHHhhhh-----HhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 4799999998764 2110 013455 3443221 111111 368899999999999998643
No 348
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.59 E-value=1.5e+02 Score=22.08 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=18.1
Q ss_pred CceeEEEECCCCCCCCCcCCCCHHHHHHHHHh
Q 019882 180 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA 211 (334)
Q Consensus 180 ~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~ 211 (334)
..+|+||+|..-|... ..++.+.+++.
T Consensus 61 ~~~dlvi~D~~l~~~~-----g~~~~~~l~~~ 87 (149)
T 1k66_A 61 PRPAVILLDLNLPGTD-----GREVLQEIKQD 87 (149)
T ss_dssp CCCSEEEECSCCSSSC-----HHHHHHHHTTS
T ss_pred CCCcEEEEECCCCCCC-----HHHHHHHHHhC
Confidence 4699999998755422 24566666654
No 349
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=21.39 E-value=58 Score=23.78 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=28.7
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCC-CCCCcCCCCHHHHHHHHHh--cCCCcEEEE
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDP-VGPAQELVEKPFFDTIAKA--LRPGGVLCN 220 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp-~gpa~~L~t~eFy~~v~~~--L~~gGilv~ 220 (334)
...++.+.++......+|+||+|..-| .. -..++.+.+++. ...--+++.
T Consensus 34 ~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~-----~g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 34 ETTDGKGSVEQIRRDRPDLVVLAVDLSAGQ-----NGYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp EECCHHHHHHHHHHHCCSEEEEESBCGGGC-----BHHHHHHHHHHSTTTTTSCEEEE
T ss_pred EecCHHHHHHHHHhcCCCEEEEeCCCCCCC-----CHHHHHHHHhcCccccCCCEEEE
Confidence 444554444332223599999998654 22 224678888876 333345555
No 350
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=21.36 E-value=86 Score=23.70 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=25.3
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhcCCCc
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGG 216 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L~~gG 216 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++. .+.-
T Consensus 40 ~~~~~~~al~~l~~~~~dlvi~d~~l~~~~-----g~~~~~~l~~~-~~~~ 84 (143)
T 2qv0_A 40 SFDDGLDVLKFLQHNKVDAIFLDINIPSLD-----GVLLAQNISQF-AHKP 84 (143)
T ss_dssp EESCHHHHHHHHHHCCCSEEEECSSCSSSC-----HHHHHHHHTTS-TTCC
T ss_pred EeCCHHHHHHHHHhCCCCEEEEecCCCCCC-----HHHHHHHHHcc-CCCc
Confidence 345554444322123599999998755322 24677777653 4444
No 351
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=20.95 E-value=2.4e+02 Score=26.04 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=22.0
Q ss_pred HHHHhcCCCcEEEEec------cchhhhhhHHHHHHHHHHHhcC
Q 019882 207 TIAKALRPGGVLCNMA------ESMWLHTHLIEDMISICRETFK 244 (334)
Q Consensus 207 ~v~~~L~~gGilv~q~------~sp~~~~~~~~~i~~tl~~vF~ 244 (334)
.+.++|+++|++|+.- -++.+.......+-+.+.+-.-
T Consensus 221 ~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~ 264 (281)
T 3lcv_B 221 EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSC 264 (281)
T ss_dssp HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCC
Confidence 6888999999999732 2444444444444444554444
No 352
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=20.91 E-value=1.3e+02 Score=21.79 Aligned_cols=42 Identities=17% Similarity=0.054 Sum_probs=25.1
Q ss_pred EEchHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHHhc
Q 019882 166 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKAL 212 (334)
Q Consensus 166 iv~Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~L 212 (334)
...++.+.++......+|+||+|..-|... ..++.+.+++.-
T Consensus 32 ~~~~~~~a~~~~~~~~~dlil~D~~l~~~~-----g~~~~~~l~~~~ 73 (120)
T 1tmy_A 32 EATNGREAVEKYKELKPDIVTMDITMPEMN-----GIDAIKEIMKID 73 (120)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEECSCGGGC-----HHHHHHHHHHHC
T ss_pred EECCHHHHHHHHHhcCCCEEEEeCCCCCCc-----HHHHHHHHHhhC
Confidence 455555544432223699999998755321 246777777653
No 353
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=20.44 E-value=1.3e+02 Score=22.61 Aligned_cols=42 Identities=14% Similarity=-0.085 Sum_probs=25.5
Q ss_pred EEchHHHHHhhCCC-CceeEEEECCCCCCCCCcCCCCHHHHHHHHHh
Q 019882 166 HIGDAVEFLRQVPR-GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA 211 (334)
Q Consensus 166 iv~Dg~~fL~~~~~-~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~~ 211 (334)
...|+.+.++.... ..+|+||+|..-|.+. -..++.+.+++.
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~----~g~~~~~~l~~~ 76 (140)
T 3h5i_A 34 IALTGEAAVEKVSGGWYPDLILMDIELGEGM----DGVQTALAIQQI 76 (140)
T ss_dssp EESSHHHHHHHHHTTCCCSEEEEESSCSSSC----CHHHHHHHHHHH
T ss_pred EecChHHHHHHHhcCCCCCEEEEeccCCCCC----CHHHHHHHHHhC
Confidence 45555555443322 4799999998765321 235677777764
No 354
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=20.07 E-value=70 Score=25.29 Aligned_cols=34 Identities=29% Similarity=0.562 Sum_probs=20.6
Q ss_pred hHHHHHhhCCCCceeEEEECCCCCCCCCcCCCCHHHHHHHHH
Q 019882 169 DAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK 210 (334)
Q Consensus 169 Dg~~fL~~~~~~~yDvIIvD~~dp~gpa~~L~t~eFy~~v~~ 210 (334)
+|.+.+++ ..||+||+|..=|.... .++.+.+++
T Consensus 44 eAl~~~~~---~~~DlvllDi~mP~~~G-----~el~~~lr~ 77 (123)
T 2lpm_A 44 EALDIARK---GQFDIAIIDVNLDGEPS-----YPVADILAE 77 (123)
T ss_dssp HHHHHHHH---CCSSEEEECSSSSSCCS-----HHHHHHHHH
T ss_pred HHHHHHHh---CCCCEEEEecCCCCCCH-----HHHHHHHHc
Confidence 34445543 46999999997664322 345555554
Done!