Query 019883
Match_columns 334
No_of_seqs 230 out of 583
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 08:32:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019883.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019883hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vbva1 b.34.17.1 (A:3-97) Hyp 100.0 9.1E-32 6.7E-36 217.3 6.4 92 206-302 2-93 (95)
2 d1e52a_ a.2.9.1 (A:) C-termina 97.9 5.4E-06 4E-10 59.7 4.9 39 155-193 16-54 (56)
3 d1h3za_ b.34.9.2 (A:) Hypothet 71.0 3.4 0.00025 30.9 5.6 66 204-282 2-70 (108)
4 d2qqra1 b.34.9.1 (A:897-955) J 69.2 2.2 0.00016 30.0 3.6 46 208-279 3-51 (59)
5 d1ez3a_ a.47.2.1 (A:) Syntaxin 44.5 43 0.0031 24.8 7.9 67 116-192 7-76 (124)
6 d2nlua1 b.34.9.2 (A:1-100) Hep 44.2 25 0.0019 25.7 6.3 60 203-282 5-67 (100)
7 d1mhna_ b.34.9.1 (A:) Survival 42.5 31 0.0023 22.8 6.0 51 207-282 3-57 (59)
8 d2fzta1 a.46.3.1 (A:1-78) Hypo 41.3 14 0.001 26.8 4.0 30 158-187 3-32 (78)
9 d1qvra2 c.37.1.20 (A:149-535) 38.0 49 0.0036 29.7 8.4 43 152-194 316-359 (387)
10 d1v29b_ b.34.4.4 (B:) Cobalt-c 37.8 18 0.0013 31.0 5.0 55 203-263 137-204 (229)
11 d2qdyb1 b.34.4.4 (B:1-211) Iro 34.2 24 0.0017 29.7 5.1 54 205-263 120-187 (211)
12 d2piha1 a.281.1.1 (A:2-124) Un 31.7 51 0.0037 24.5 6.3 14 117-130 8-21 (123)
13 d2d9ta1 b.34.9.1 (A:8-67) Tudo 31.6 47 0.0034 21.8 5.4 51 207-282 2-56 (60)
14 d1khca_ b.34.9.2 (A:) DNA meth 30.8 55 0.004 25.3 6.5 59 205-282 6-67 (137)
15 d1ed7a_ b.72.2.1 (A:) Chitin-b 29.9 4.1 0.0003 26.9 -0.5 28 204-231 4-36 (45)
16 d2rh2a1 b.34.4.1 (A:21-78) R67 27.4 18 0.0013 24.3 2.5 23 207-229 3-26 (58)
17 d1ugpb_ b.34.4.4 (B:) Cobalt-c 26.7 21 0.0015 30.5 3.4 54 203-262 134-200 (226)
18 d1fpoa2 a.23.1.1 (A:77-171) HS 25.5 1E+02 0.0076 21.8 6.9 36 153-188 44-79 (95)
19 d2gy9p1 d.27.1.1 (P:1-78) Ribo 23.9 14 0.001 26.8 1.4 13 250-262 11-23 (78)
20 d2uubp1 d.27.1.1 (P:1-83) Ribo 23.4 14 0.001 27.0 1.4 13 250-262 11-23 (83)
No 1
>d1vbva1 b.34.17.1 (A:3-97) Hypothetical protein YccV {Escherichia coli [TaxId: 562]}
Probab=99.97 E-value=9.1e-32 Score=217.29 Aligned_cols=92 Identities=25% Similarity=0.385 Sum_probs=66.4
Q ss_pred cccccccEEEEecCCeeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecCCCCCceeeeecccCccccCCCC
Q 019883 206 FAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASDQPD 285 (334)
Q Consensus 206 VkFrVGQVVrHrrygYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~d~~~~~~~YVAEENLe~~~~p~ 285 (334)
-||+|||||+||+|||+|||+||||.|+++++|+..++.+. .+++||||||||++++. .+.++||||+||++...+
T Consensus 2 aKF~IGqivrHr~~~yrGVI~~wDp~~~~~~eW~~~~~~~~--~~r~QPfYhvLv~~~~~-~~~~tYVaEeNL~~d~~~- 77 (95)
T d1vbva1 2 SKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVND--ELRAAPWYHVVMEDDNG-LPVHTYLAEAQLSSELQD- 77 (95)
T ss_dssp CSSCTTCEEEETTTCCEEEEEEEECC--------------------CCCEEEEEEECSSC-CEEEEEEEGGGEEECCCS-
T ss_pred CccccCcEEEEeecCcCEEEEeeEEEecCCHHHHHhccccC--CCCCCCcEEEEEEcCCC-cEEEEEecchhcccCCCC-
Confidence 48999999999999999999999999999999999998775 35799999999998643 457899999999998754
Q ss_pred CCccCchhhhhhccccC
Q 019883 286 MARFDHPYISFLFYGTD 302 (334)
Q Consensus 286 ~~pI~HP~ig~yF~rFD 302 (334)
.+|.||.|+.+|+.+.
T Consensus 78 -~~i~HP~i~el~e~~~ 93 (95)
T d1vbva1 78 -EHPEQPSMDELAQTIR 93 (95)
T ss_dssp -CCTTCHHHHHHHHHHT
T ss_pred -CCCCCCCHHHHHHHhh
Confidence 7899999999999764
No 2
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=97.91 E-value=5.4e-06 Score=59.66 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHHHHH
Q 019883 155 ALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193 (334)
Q Consensus 155 a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~~~a 193 (334)
...|.+|+.+|++|.++.+||+||.+||+|+.|++.+.+
T Consensus 16 ~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l~~ 54 (56)
T d1e52a_ 16 QQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHh
Confidence 456888999999999999999999999999999988764
No 3
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=71.00 E-value=3.4 Score=30.93 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=44.8
Q ss_pred cccccccccEEEEecCCe---eEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecCCCCCceeeeecccCccc
Q 019883 204 ARFAFRLGQKVNHKIFGY---RAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLA 280 (334)
Q Consensus 204 ~~VkFrVGQVVrHrrygY---rGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~d~~~~~~~YVAEENLe~ 280 (334)
..+.|.+|++|-=|..|| .|+|+..+.. +.. ............|+|..=+. ...+.|+..+|.+
T Consensus 2 ~~~~f~~GdlVWaK~~gyPwWPa~I~~~~~~---~~~------~~~~~~~~~~~~~~V~FFg~----~~~aWv~~~~l~p 68 (108)
T d1h3za_ 2 ERVNYKPGMRVLTKMSGFPWWPSMVVTESKM---TSV------ARKSKPKRAGTFYPVIFFPN----KEYLWTGSDSLTP 68 (108)
T ss_dssp CCCCCCTTCEEEEEETTEEEEEEEECCGGGC---CHH------HHHTCCCSSSCEEEEEETTT----TCCEEEEGGGEEE
T ss_pred CCCcCCCCCEEEEEcCCCCCCCEEEeChhhC---CHH------HHhccccCCCCeEEEEEeCC----CCEEEEcHHHCcC
Confidence 357899999999999887 6999865431 110 11112233456899997642 2578999999988
Q ss_pred cC
Q 019883 281 SD 282 (334)
Q Consensus 281 ~~ 282 (334)
.+
T Consensus 69 f~ 70 (108)
T d1h3za_ 69 LT 70 (108)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 4
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.22 E-value=2.2 Score=30.00 Aligned_cols=46 Identities=26% Similarity=0.410 Sum_probs=30.6
Q ss_pred cccccEEE--EecCC-eeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecCCCCCceeeeecccCcc
Q 019883 208 FRLGQKVN--HKIFG-YRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLL 279 (334)
Q Consensus 208 FrVGQVVr--Hrryg-YrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~d~~~~~~~YVAEENLe 279 (334)
-.+||.|. ||.-. |.|.|+|. ..|.||.|-+|+++ ...-+..|+|.
T Consensus 3 i~~Gq~VI~KhkNgryY~c~V~~~----------------------~~qtfyeV~FdDgS----~sdnl~PEdIv 51 (59)
T d2qqra1 3 ITAGQKVISKHKNGRFYQCEVVRL----------------------TTETFYEVNFDDGS----FSDNLYPEDIV 51 (59)
T ss_dssp CCTTCEEEEECTTSSEEEEEEEEE----------------------EEEEEEEEEETTSC----EEEEECGGGBC
T ss_pred cccccEEEEEccCCcEEEEEEEEe----------------------eeEEEEEEEecCCC----cccCcCchhcc
Confidence 46899994 65544 57888774 25899999998753 23344555553
No 5
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=44.52 E-value=43 Score=24.76 Aligned_cols=67 Identities=13% Similarity=0.283 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHHHHHH
Q 019883 116 EEYDIAQQLRNKLTEVEEEI---SRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (334)
Q Consensus 116 ~~y~~a~~l~~~l~~i~~e~---~~~~~~K~~~~~~~~a~d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE~~~~ 192 (334)
++|...+.|+..|..|...| ..+| .|.-.+...+. .++.+|...+. +--..|-.++..|+.|++..+
T Consensus 7 ~Ff~eV~~Ir~~I~~i~~~v~~i~~~~-~~~l~~~~~~~--------~~~~~l~~~~~-~i~~~a~~ik~~Lk~l~~~~~ 76 (124)
T d1ez3a_ 7 EFFEQVEEIRGFIDKIAENVEEVKRKH-SAILASPNPDE--------KTKEELEELMS-DIKKTANKVRSKLKSIEQSIE 76 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCSSCCH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCcch--------hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999997664 3333 22211111111 23334444431 223467888999998876554
No 6
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.18 E-value=25 Score=25.72 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=41.3
Q ss_pred ccccccccccEEEEecCCe---eEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecCCCCCceeeeecccCcc
Q 019883 203 NARFAFRLGQKVNHKIFGY---RAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLL 279 (334)
Q Consensus 203 ~~~VkFrVGQVVrHrrygY---rGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~d~~~~~~~YVAEENLe 279 (334)
+..-.|.+|++|-=|..|| .|+|+.-... ........|+|..-+. ...++|...+|.
T Consensus 5 ~~~~~f~~GdlVWaK~~gypwWPa~V~~~~~~----------------~~~~~~~~~~V~Ffg~----~~~~wv~~~~l~ 64 (100)
T d2nlua1 5 NRQKEYKCGDLVFAKMKGYPHWPARIDEMPEA----------------AVKSTANKYQVFFFGT----HETAFLGPKDLF 64 (100)
T ss_dssp CCCCCCSTTCEEEEEETTEEEEEEEEECCTTS----------------SCSCCCSCEEEEETTT----TEEEEECGGGEE
T ss_pred cCCCcCCcCCEEEEecCCCCCCCEEEecchhh----------------cccCCCCEEEEEEcCC----CCEEEEcHHHcc
Confidence 3456899999998888886 6999752211 1122334588887642 467899999998
Q ss_pred ccC
Q 019883 280 ASD 282 (334)
Q Consensus 280 ~~~ 282 (334)
+..
T Consensus 65 ~f~ 67 (100)
T d2nlua1 65 PYE 67 (100)
T ss_dssp CHH
T ss_pred Chh
Confidence 764
No 7
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.53 E-value=31 Score=22.83 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=33.7
Q ss_pred ccccccEEEEecC--C--eeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecCCCCCceeeeecccCccccC
Q 019883 207 AFRLGQKVNHKIF--G--YRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASD 282 (334)
Q Consensus 207 kFrVGQVVrHrry--g--YrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~d~~~~~~~YVAEENLe~~~ 282 (334)
+++||+.+.=+.. | |||+|...++ +...+.|+.-+. +...-|+-.+|.++.
T Consensus 3 ~wkvG~~C~A~~s~Dg~wYRA~I~~v~~---------------------~~~~~~V~fvDY----Gn~e~V~~~~l~~~~ 57 (59)
T d1mhna_ 3 QWKVGDKCSAIWSEDGCIYPATIASIDF---------------------KRETCVVVYTGY----GNREEQNLSDLLSPI 57 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEET---------------------TTTEEEEEETTT----TEEEEEEGGGCBCTT
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcC---------------------CCCEEEEEEEeC----CCEEEEEHHHCcCCC
Confidence 5789999876542 2 7999987653 123477776553 356678888876653
No 8
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]}
Probab=41.28 E-value=14 Score=26.79 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhchhchhHHHHHHHHHHHH
Q 019883 158 IIRLRADLQKAIDSENYALAADLRDQICKL 187 (334)
Q Consensus 158 L~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~L 187 (334)
|..+..+...||+.|+||.--.|-|+-++|
T Consensus 3 I~EiErkIDeaIE~EDyE~L~~LL~kReel 32 (78)
T d2fzta1 3 IDEIERKIDEAIEKEDYETLLSLLNKRKEL 32 (78)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456677888999999999777777666655
No 9
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=38.01 E-value=49 Score=29.72 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHhhchhchhHHHHHH-HHHHHHHHHHHHH
Q 019883 152 QDKALSIIRLRADLQKAIDSENYALAADLR-DQICKLEAESLAA 194 (334)
Q Consensus 152 ~d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LR-D~Ik~LE~~~~aa 194 (334)
.+...+|..++.++..|....+|++|+.|+ ..|..||.+....
T Consensus 316 ~~Lk~~Le~lr~~le~A~r~gd~e~AaeL~y~~ip~le~el~~l 359 (387)
T d1qvra2 316 REAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEAL 359 (387)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHhhchHHHHHHHHHHH
Confidence 355666888899999999999999999998 4667787777643
No 10
>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=37.82 E-value=18 Score=30.98 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=32.2
Q ss_pred ccccccccccEEEEe--------c-----CCeeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecC
Q 019883 203 NARFAFRLGQKVNHK--------I-----FGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVH 263 (334)
Q Consensus 203 ~~~VkFrVGQVVrHr--------r-----ygYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~ 263 (334)
....+|+|||.|+-+ | -|-.|+|+----.+--|+. .. .. .....||.|.|-+...
T Consensus 137 ~~~p~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~i~~~~g~~~~pd~---~a--~~-~~~~p~~lY~V~F~~~ 204 (229)
T d1v29b_ 137 SSFPRFEVGERIKTRNIHPTGHTRFPRYVRDKYGVIEEVYGAHVFPDD---AA--HR-KGENPQYLYRVRFDAE 204 (229)
T ss_dssp CCCCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEEEEECCHHH---HT--TT-SCCCCEEEEEEEEEHH
T ss_pred CCCCcCCCCCEEEEeeCCCCCccccchhhcCCeeEEEEEecCCCCccc---cc--cC-CCCCceeeEEEEEech
Confidence 445799999999943 2 2347999854333332221 01 11 1223489999999753
No 11
>d2qdyb1 b.34.4.4 (B:1-211) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=34.16 E-value=24 Score=29.75 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=30.4
Q ss_pred ccccccccEEEE--------ec-----CCeeEEEE-cccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecC
Q 019883 205 RFAFRLGQKVNH--------KI-----FGYRAVIC-GMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVH 263 (334)
Q Consensus 205 ~VkFrVGQVVrH--------rr-----ygYrGVIv-GWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~ 263 (334)
..+|+|||.|+- .| -|-.|+|+ .-...+--|+. . .........||.|.|.++..
T Consensus 120 ~p~F~vGd~Vrv~~~~~~gHtRlP~Y~rgk~G~I~~~~~g~~~~Pd~----~-A~g~~~~~~~~lY~V~F~~~ 187 (211)
T d2qdyb1 120 TTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTTEKWPFPDA----I-GHGRNDAGEEPTYHVKFAAE 187 (211)
T ss_dssp CCCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEECSSCBCCHHH----H-TTTCSCCCCBCEEEEEEEHH
T ss_pred CCcCCCCCEEEEccCCCCCccccchhhcCCeEEEEeeccCCcCCCcc----c-ccCCCCCCccceEEEEEech
Confidence 358999999994 32 23489996 33222222221 0 01111224589999999753
No 12
>d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus subtilis [TaxId: 1423]}
Probab=31.67 E-value=51 Score=24.49 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 019883 117 EYDIAQQLRNKLTE 130 (334)
Q Consensus 117 ~y~~a~~l~~~l~~ 130 (334)
-|+.|++|-..|.+
T Consensus 8 I~d~A~eL~~~I~~ 21 (123)
T d2piha1 8 IVQQARNLAKMISE 21 (123)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc
Confidence 34555555444443
No 13
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.60 E-value=47 Score=21.83 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=34.6
Q ss_pred ccccccEEEEecC--C--eeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecCCCCCceeeeecccCccccC
Q 019883 207 AFRLGQKVNHKIF--G--YRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASD 282 (334)
Q Consensus 207 kFrVGQVVrHrry--g--YrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~d~~~~~~~YVAEENLe~~~ 282 (334)
.|+||+++.-+.. | |||+|.+.++. .--+.|+..+. +....|+-.+|.+++
T Consensus 2 ~wkvG~~c~A~~~~D~~wYRA~I~~i~~~---------------------~~~~~V~fvDY----Gn~e~v~~~~lr~l~ 56 (60)
T d2d9ta1 2 VWKPGDECFALYWEDNKFYRAEVEALHSS---------------------GMTAVVKFTDY----GNYEEVLLSNIKPVQ 56 (60)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSS---------------------SSEEEEEETTT----TEEEEEEGGGEEECC
T ss_pred ccCcCCEEEEEECCCCCEEEEEEEEEcCC---------------------CCEEEEEEECC----CCEEEEcHHHcCcCC
Confidence 3789999986643 2 89999876531 11266776543 356788888888875
No 14
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.78 E-value=55 Score=25.29 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=40.6
Q ss_pred ccccccccEEEEecCCe---eEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeecCCCCCceeeeecccCcccc
Q 019883 205 RFAFRLGQKVNHKIFGY---RAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLAS 281 (334)
Q Consensus 205 ~VkFrVGQVVrHrrygY---rGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~~d~~~~~~~YVAEENLe~~ 281 (334)
...|.||++|-=|.-|| .|.|+.+...... ......|+|-.-+. ...++|..++|.+.
T Consensus 6 g~~f~~GdlVWaK~~g~pwWPg~V~~~~~~~~~---------------~~~~~~~~V~fFGd----~~~~wv~~~~L~pf 66 (137)
T d1khca_ 6 DKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKR---------------QAMPGMRWVQWFGD----GKFSEISADKLVAL 66 (137)
T ss_dssp SSSCCTTCEEEEEETTTEEEEEEEECGGGTTSC---------------CCCTTEEEEEETTT----CCEEEEEGGGCEET
T ss_pred CCcCccCCEEEEecCCCCCCCeEEcChhhhccc---------------cCCCCcEEEEEecC----CCEEEecHHHCccc
Confidence 45699999998777775 7999987543211 11223577776442 35789999999887
Q ss_pred C
Q 019883 282 D 282 (334)
Q Consensus 282 ~ 282 (334)
.
T Consensus 67 ~ 67 (137)
T d1khca_ 67 G 67 (137)
T ss_dssp T
T ss_pred H
Confidence 4
No 15
>d1ed7a_ b.72.2.1 (A:) Chitin-binding domain of chitinase A1 {Bacillus circulans [TaxId: 1397]}
Probab=29.91 E-value=4.1 Score=26.92 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=22.1
Q ss_pred cccccccccEEEEecCCeeEEEE-----ccccc
Q 019883 204 ARFAFRLGQKVNHKIFGYRAVIC-----GMDPV 231 (334)
Q Consensus 204 ~~VkFrVGQVVrHrrygYrGVIv-----GWD~~ 231 (334)
+...|++|++|.|.--.|+|+.- ||.|.
T Consensus 4 ~~~~Y~~Gd~Vty~G~~Y~ciq~HTs~~~W~P~ 36 (45)
T d1ed7a_ 4 VNTAYTAGQLVTYNGKTYKCLQPHTSLAGWEPS 36 (45)
T ss_dssp SSEEECTTCCEEETTEEECBCSCEEECTTCSSC
T ss_pred CCceEcCCCEEEECCeEEEEEecccccCCCCCC
Confidence 35789999999998777877753 88874
No 16
>d2rh2a1 b.34.4.1 (A:21-78) R67 dihydrofolate reductase {Escherichia coli, plasmid PLZ1 [TaxId: 562]}
Probab=27.42 E-value=18 Score=24.32 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=18.5
Q ss_pred ccccccEEEEec-CCeeEEEEccc
Q 019883 207 AFRLGQKVNHKI-FGYRAVICGMD 229 (334)
Q Consensus 207 kFrVGQVVrHrr-ygYrGVIvGWD 229 (334)
.|..|+-||.|. -.|.|-|+||=
T Consensus 3 tf~lgdrvrkksgaawqg~ivgwy 26 (58)
T d2rh2a1 3 TFGMGDRVRKKSGAAWQGQIVGWY 26 (58)
T ss_dssp CCCTTCEEEESSSSCCEEEEEEEE
T ss_pred ccccchhhhhccCccccceEeEEE
Confidence 588999999654 23899999994
No 17
>d1ugpb_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=26.67 E-value=21 Score=30.46 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=31.6
Q ss_pred ccccccccccEEEEe--------c-----CCeeEEEEcccccccCChhhHHHhhhhhcCCCCCCCeEEEEeec
Q 019883 203 NARFAFRLGQKVNHK--------I-----FGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDV 262 (334)
Q Consensus 203 ~~~VkFrVGQVVrHr--------r-----ygYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLvd~ 262 (334)
....+|+||+.|+-+ | -|-.|+|+-.-..+--|+. .. +. .....||.|.|-+..
T Consensus 134 ~~~p~F~vGd~Vrv~~~~~~gHtR~P~Y~rg~~G~I~~~~g~~~~Pd~---~A--~g-~~e~p~~lY~V~F~~ 200 (226)
T d1ugpb_ 134 DRPPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHHGAYIYPDT---AG--NG-LGECPEHLYTVRFTA 200 (226)
T ss_dssp SSCCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEEEEECCHHH---HT--TT-SCCCCEEEEEEEEEH
T ss_pred CCCCccCCCCEEEEccCCCCCceeCchhhcCCeeEEEEEecCcCCCcc---cc--cC-CCCCceeeEEEEEec
Confidence 345789999999943 2 2348999854333322221 11 11 112238999999974
No 18
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}
Probab=25.50 E-value=1e+02 Score=21.83 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhhchhchhHHHHHHHHHHHHH
Q 019883 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLE 188 (334)
Q Consensus 153 d~a~qL~~Lk~~Lq~aI~~E~yE~AA~LRD~Ik~LE 188 (334)
+...++..+...+..++...+|+.|+.+--+++=+.
T Consensus 44 ei~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLkF~~ 79 (95)
T d1fpoa2 44 RVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLD 79 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhHHHH
Confidence 344556667778889999999999988766666553
No 19
>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}
Probab=23.88 E-value=14 Score=26.77 Aligned_cols=13 Identities=46% Similarity=0.820 Sum_probs=10.2
Q ss_pred CCCCCeEEEEeec
Q 019883 250 GPSQPFYQVLVDV 262 (334)
Q Consensus 250 g~~QPFY~VLvd~ 262 (334)
.+++|||+|.+-+
T Consensus 11 ~k~~P~YrIVv~d 23 (78)
T d2gy9p1 11 AKKRPFYQVVVAD 23 (78)
T ss_dssp BTTBCCEEEEEEE
T ss_pred CCCCCeEEEEEee
Confidence 4679999998743
No 20
>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}
Probab=23.43 E-value=14 Score=26.98 Aligned_cols=13 Identities=23% Similarity=0.577 Sum_probs=10.2
Q ss_pred CCCCCeEEEEeec
Q 019883 250 GPSQPFYQVLVDV 262 (334)
Q Consensus 250 g~~QPFY~VLvd~ 262 (334)
.+++|||+|.+-+
T Consensus 11 ~k~~P~yrIVv~d 23 (83)
T d2uubp1 11 SKHNPHYRIVVTD 23 (83)
T ss_dssp BTTBCCEEEEEEE
T ss_pred CCCCCeEEEEEEe
Confidence 4679999988743
Done!