Query 019884
Match_columns 334
No_of_seqs 80 out of 82
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 05:18:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02671 PAH: Paired amphipath 96.9 0.0025 5.4E-08 45.4 5.5 46 283-329 1-46 (47)
2 PF06637 PV-1: PV-1 protein (P 96.7 0.019 4.2E-07 58.2 12.0 61 55-115 315-375 (442)
3 PF08614 ATG16: Autophagy prot 96.1 0.083 1.8E-06 47.8 11.1 61 51-115 131-192 (194)
4 PRK10884 SH3 domain-containing 96.0 0.085 1.8E-06 49.1 11.1 68 41-115 91-158 (206)
5 PF12718 Tropomyosin_1: Tropom 95.9 0.18 3.9E-06 44.3 12.2 82 35-116 6-93 (143)
6 PRK11637 AmiB activator; Provi 95.9 0.12 2.6E-06 51.8 12.4 109 11-128 17-135 (428)
7 COG2433 Uncharacterized conser 95.5 0.2 4.4E-06 53.5 12.7 85 39-123 425-515 (652)
8 PF12329 TMF_DNA_bd: TATA elem 95.2 0.25 5.3E-06 39.2 9.5 24 54-77 2-25 (74)
9 PF11559 ADIP: Afadin- and alp 95.1 0.39 8.6E-06 41.5 11.3 63 50-116 59-121 (151)
10 PRK11637 AmiB activator; Provi 95.0 0.44 9.6E-06 47.8 13.0 67 44-114 69-135 (428)
11 PF11559 ADIP: Afadin- and alp 94.7 0.4 8.8E-06 41.4 10.4 73 44-116 67-146 (151)
12 PF08614 ATG16: Autophagy prot 94.5 0.4 8.8E-06 43.4 10.2 85 41-125 93-180 (194)
13 PF10186 Atg14: UV radiation r 94.3 0.99 2.2E-05 41.7 12.7 87 42-128 62-155 (302)
14 PRK09039 hypothetical protein; 94.2 0.75 1.6E-05 45.6 12.3 88 40-127 113-204 (343)
15 PF10473 CENP-F_leu_zip: Leuci 93.7 1.8 3.8E-05 38.5 12.3 85 40-128 21-112 (140)
16 KOG0977 Nuclear envelope prote 93.6 1.2 2.5E-05 47.4 12.7 83 31-113 95-193 (546)
17 COG1579 Zn-ribbon protein, pos 93.5 1.2 2.6E-05 42.7 11.7 28 33-60 49-76 (239)
18 PRK03918 chromosome segregatio 93.4 2.4 5.3E-05 45.5 15.1 33 20-52 153-185 (880)
19 PF14197 Cep57_CLD_2: Centroso 93.3 1.2 2.5E-05 35.1 9.5 58 47-104 2-62 (69)
20 PRK10884 SH3 domain-containing 92.9 0.91 2E-05 42.4 9.8 64 40-110 97-160 (206)
21 PF04156 IncA: IncA protein; 92.7 3.2 7E-05 36.8 12.6 83 40-122 85-170 (191)
22 COG1579 Zn-ribbon protein, pos 92.5 3.2 7E-05 39.9 13.1 82 32-115 22-115 (239)
23 KOG0288 WD40 repeat protein Ti 92.4 1.4 3E-05 45.6 11.0 61 66-130 43-103 (459)
24 PRK02224 chromosome segregatio 92.3 3.6 7.8E-05 44.5 14.7 23 102-124 278-300 (880)
25 TIGR03185 DNA_S_dndD DNA sulfu 92.2 2.6 5.6E-05 44.7 13.3 44 38-81 393-438 (650)
26 PF04111 APG6: Autophagy prote 92.2 2.2 4.8E-05 41.9 11.9 77 40-116 47-133 (314)
27 COG5602 SIN3 Histone deacetyla 92.2 1.1 2.3E-05 50.2 10.5 84 248-332 244-335 (1163)
28 KOG0994 Extracellular matrix g 91.9 4.2 9.1E-05 47.0 14.7 111 14-124 1497-1637(1758)
29 KOG3990 Uncharacterized conser 91.8 0.56 1.2E-05 45.8 7.1 34 45-78 227-260 (305)
30 PHA02562 46 endonuclease subun 91.7 2.8 6.1E-05 42.6 12.4 98 18-115 141-246 (562)
31 PF09789 DUF2353: Uncharacteri 91.7 1.6 3.5E-05 43.5 10.4 72 40-115 90-180 (319)
32 PHA02562 46 endonuclease subun 91.5 2.1 4.6E-05 43.5 11.4 10 287-296 516-525 (562)
33 PF09755 DUF2046: Uncharacteri 91.4 4.5 9.7E-05 40.4 13.0 86 39-128 109-203 (310)
34 KOG1103 Predicted coiled-coil 91.3 5.8 0.00013 40.8 13.9 75 42-120 219-300 (561)
35 PF03148 Tektin: Tektin family 91.3 7.5 0.00016 39.1 14.7 99 28-126 236-354 (384)
36 KOG0994 Extracellular matrix g 91.2 1.1 2.3E-05 51.5 9.4 77 40-116 1198-1294(1758)
37 PF11180 DUF2968: Protein of u 91.2 3.6 7.8E-05 38.5 11.5 75 43-117 105-182 (192)
38 PF05700 BCAS2: Breast carcino 91.1 9.6 0.00021 35.5 14.3 89 29-117 122-210 (221)
39 KOG3433 Protein involved in me 90.8 1.8 4E-05 40.5 9.1 77 40-127 78-154 (203)
40 PF13870 DUF4201: Domain of un 90.5 10 0.00022 33.7 13.4 64 52-115 51-117 (177)
41 PF10205 KLRAQ: Predicted coil 90.5 4 8.6E-05 34.8 10.1 68 47-114 2-72 (102)
42 TIGR02169 SMC_prok_A chromosom 90.4 4.1 9E-05 44.4 12.9 13 304-316 1137-1149(1164)
43 PF08647 BRE1: BRE1 E3 ubiquit 90.3 8.4 0.00018 31.6 11.8 79 45-127 5-90 (96)
44 COG4942 Membrane-bound metallo 90.3 2.9 6.4E-05 43.2 10.9 38 43-80 38-75 (420)
45 PF10224 DUF2205: Predicted co 90.2 1.4 3.1E-05 35.9 7.0 40 71-110 23-65 (80)
46 PF13851 GAS: Growth-arrest sp 90.0 15 0.00033 33.9 14.6 78 39-116 44-127 (201)
47 KOG4010 Coiled-coil protein TP 89.9 0.55 1.2E-05 44.0 4.9 35 40-74 48-82 (208)
48 PF08317 Spc7: Spc7 kinetochor 89.8 6.2 0.00013 38.6 12.4 13 45-57 186-198 (325)
49 PF12325 TMF_TATA_bd: TATA ele 89.7 6.6 0.00014 34.0 11.2 71 54-128 20-93 (120)
50 PF12718 Tropomyosin_1: Tropom 89.5 7 0.00015 34.4 11.4 71 40-110 39-122 (143)
51 PF10146 zf-C4H2: Zinc finger- 89.5 4.8 0.0001 38.3 11.0 41 92-132 70-111 (230)
52 PF03962 Mnd1: Mnd1 family; I 89.2 6 0.00013 36.3 11.2 63 47-114 66-128 (188)
53 KOG0995 Centromere-associated 89.2 4.7 0.0001 43.2 11.7 46 86-131 305-367 (581)
54 TIGR02169 SMC_prok_A chromosom 89.1 5.6 0.00012 43.4 12.7 11 312-322 1130-1140(1164)
55 PF15619 Lebercilin: Ciliary p 89.0 3.4 7.3E-05 38.2 9.5 61 46-106 121-188 (194)
56 PF08172 CASP_C: CASP C termin 89.0 3.7 7.9E-05 39.4 10.0 34 46-79 2-35 (248)
57 PF14197 Cep57_CLD_2: Centroso 88.7 3.3 7.2E-05 32.6 7.9 55 63-121 4-62 (69)
58 PF09726 Macoilin: Transmembra 88.6 2.1 4.6E-05 46.5 9.0 55 47-101 422-479 (697)
59 PF04156 IncA: IncA protein; 88.6 10 0.00023 33.5 12.0 69 48-116 79-150 (191)
60 TIGR03752 conj_TIGR03752 integ 88.3 4.3 9.2E-05 42.6 10.6 41 41-81 64-104 (472)
61 PF05266 DUF724: Protein of un 88.1 8.1 0.00018 35.7 11.3 70 43-116 103-179 (190)
62 PF09726 Macoilin: Transmembra 88.1 4.9 0.00011 43.8 11.3 41 36-76 538-578 (697)
63 PF10186 Atg14: UV radiation r 88.0 20 0.00043 33.1 13.9 42 40-81 67-108 (302)
64 KOG2685 Cystoskeletal protein 88.0 19 0.00041 37.5 14.7 99 26-124 261-379 (421)
65 KOG0161 Myosin class II heavy 87.7 5.9 0.00013 47.8 12.4 92 38-129 1317-1419(1930)
66 PF11068 YlqD: YlqD protein; 87.6 5.3 0.00011 35.1 9.3 64 62-129 18-86 (131)
67 KOG4398 Predicted coiled-coil 87.5 3.4 7.4E-05 41.2 8.8 84 40-127 2-89 (359)
68 smart00787 Spc7 Spc7 kinetocho 87.4 9.2 0.0002 37.8 11.8 51 51-101 205-258 (312)
69 PF08317 Spc7: Spc7 kinetochor 87.4 13 0.00028 36.4 12.9 89 41-129 154-263 (325)
70 PRK09039 hypothetical protein; 87.3 11 0.00023 37.5 12.4 12 115-126 174-185 (343)
71 PF00261 Tropomyosin: Tropomyo 87.2 10 0.00022 35.4 11.6 54 28-81 99-158 (237)
72 TIGR03017 EpsF chain length de 87.1 6.3 0.00014 39.1 10.7 91 40-130 258-369 (444)
73 smart00787 Spc7 Spc7 kinetocho 87.1 12 0.00025 37.1 12.4 78 41-129 177-258 (312)
74 COG4942 Membrane-bound metallo 86.9 6.9 0.00015 40.5 11.0 67 50-120 38-104 (420)
75 COG4026 Uncharacterized protei 86.7 13 0.00029 36.2 12.1 86 29-114 104-202 (290)
76 KOG0804 Cytoplasmic Zn-finger 86.7 12 0.00026 39.4 12.6 97 27-127 327-441 (493)
77 PF07106 TBPIP: Tat binding pr 86.6 7.6 0.00016 34.2 9.9 37 41-77 91-129 (169)
78 TIGR03185 DNA_S_dndD DNA sulfu 86.6 9.1 0.0002 40.7 12.1 13 266-279 614-626 (650)
79 PF10805 DUF2730: Protein of u 86.4 3.3 7.1E-05 34.7 7.1 39 42-80 48-88 (106)
80 PF13870 DUF4201: Domain of un 86.4 16 0.00035 32.4 11.9 53 25-81 42-94 (177)
81 KOG4204 Histone deacetylase co 86.4 2 4.3E-05 40.8 6.4 64 266-330 18-83 (231)
82 PF06810 Phage_GP20: Phage min 86.3 4.9 0.00011 35.9 8.5 34 40-73 17-50 (155)
83 PF02050 FliJ: Flagellar FliJ 86.3 14 0.00031 28.9 11.2 80 41-124 17-101 (123)
84 PF11932 DUF3450: Protein of u 86.2 17 0.00037 34.0 12.5 51 30-80 27-79 (251)
85 PF13851 GAS: Growth-arrest sp 86.2 17 0.00038 33.6 12.3 81 43-123 62-148 (201)
86 PF00038 Filament: Intermediat 86.1 29 0.00063 32.9 14.1 72 50-121 216-294 (312)
87 PF00769 ERM: Ezrin/radixin/mo 86.1 9.4 0.0002 36.3 10.8 78 41-118 10-97 (246)
88 PF12325 TMF_TATA_bd: TATA ele 86.0 5.9 0.00013 34.3 8.6 19 42-60 22-40 (120)
89 PRK02224 chromosome segregatio 86.0 13 0.00028 40.3 13.1 8 272-279 468-475 (880)
90 TIGR03007 pepcterm_ChnLen poly 85.9 7.9 0.00017 39.2 10.8 42 40-81 251-292 (498)
91 PF06005 DUF904: Protein of un 85.8 13 0.00028 29.6 9.8 23 86-108 43-65 (72)
92 PF04201 TPD52: Tumour protein 85.6 11 0.00024 34.5 10.5 33 41-73 34-66 (162)
93 KOG0161 Myosin class II heavy 85.6 9.9 0.00021 46.0 12.7 105 28-132 1696-1823(1930)
94 PF12329 TMF_DNA_bd: TATA elem 85.5 3.7 8.1E-05 32.5 6.6 46 69-118 3-48 (74)
95 TIGR01843 type_I_hlyD type I s 85.5 28 0.00061 33.6 14.0 41 40-80 141-181 (423)
96 PF05911 DUF869: Plant protein 85.3 6.4 0.00014 43.5 10.5 60 35-95 10-72 (769)
97 PF10174 Cast: RIM-binding pro 85.3 9.4 0.0002 42.3 11.7 73 44-116 393-492 (775)
98 PF15070 GOLGA2L5: Putative go 85.3 23 0.00049 38.3 14.3 19 42-60 49-67 (617)
99 PF07888 CALCOCO1: Calcium bin 85.2 20 0.00043 38.4 13.6 39 40-78 161-199 (546)
100 PF04899 MbeD_MobD: MbeD/MobD 85.2 7.4 0.00016 31.0 8.1 35 82-116 35-69 (70)
101 PF13863 DUF4200: Domain of un 84.7 21 0.00046 29.5 13.3 60 67-126 42-104 (126)
102 PRK10698 phage shock protein P 84.5 17 0.00037 34.1 11.6 29 88-116 98-126 (222)
103 PF07888 CALCOCO1: Calcium bin 84.4 14 0.0003 39.6 12.0 36 46-81 160-195 (546)
104 PF12777 MT: Microtubule-bindi 84.2 4.9 0.00011 39.5 8.3 84 14-102 167-276 (344)
105 KOG2129 Uncharacterized conser 84.0 18 0.0004 38.0 12.3 85 37-124 202-317 (552)
106 KOG4005 Transcription factor X 83.9 11 0.00024 36.8 10.2 80 42-127 58-146 (292)
107 COG1196 Smc Chromosome segrega 83.8 14 0.0003 42.2 12.5 31 283-313 969-999 (1163)
108 COG1322 Predicted nuclease of 83.7 27 0.00059 36.4 13.7 41 89-129 98-155 (448)
109 TIGR00606 rad50 rad50. This fa 83.6 11 0.00024 43.3 11.9 71 45-115 1007-1087(1311)
110 TIGR02231 conserved hypothetic 83.4 11 0.00025 38.8 10.9 78 40-117 68-166 (525)
111 PF05377 FlaC_arch: Flagella a 83.4 5 0.00011 30.8 6.2 38 66-114 2-39 (55)
112 KOG1962 B-cell receptor-associ 83.2 5.9 0.00013 37.7 8.0 61 51-115 135-198 (216)
113 KOG0250 DNA repair protein RAD 83.2 12 0.00027 42.7 11.6 37 92-128 390-426 (1074)
114 KOG0963 Transcription factor/C 83.2 12 0.00026 40.6 11.0 99 29-128 227-342 (629)
115 PF15035 Rootletin: Ciliary ro 83.0 9 0.0002 35.2 8.9 21 95-115 94-114 (182)
116 PF11594 Med28: Mediator compl 82.9 8.8 0.00019 33.0 8.2 52 30-81 14-73 (106)
117 TIGR01005 eps_transp_fam exopo 82.8 9.5 0.00021 40.9 10.3 31 102-132 375-405 (754)
118 PF03962 Mnd1: Mnd1 family; I 82.7 8.6 0.00019 35.3 8.7 31 40-70 66-96 (188)
119 PF10473 CENP-F_leu_zip: Leuci 82.6 21 0.00045 31.9 10.7 71 41-114 64-137 (140)
120 PF00038 Filament: Intermediat 82.4 22 0.00049 33.7 11.7 21 40-60 15-35 (312)
121 TIGR02559 HrpB7 type III secre 82.3 13 0.00028 34.0 9.4 61 39-99 82-148 (158)
122 TIGR03017 EpsF chain length de 82.3 21 0.00046 35.4 11.9 21 52-72 256-276 (444)
123 PF10168 Nup88: Nuclear pore c 82.3 12 0.00026 41.0 10.9 65 38-106 560-624 (717)
124 PF05911 DUF869: Plant protein 82.2 15 0.00033 40.7 11.7 70 31-102 89-161 (769)
125 PF05667 DUF812: Protein of un 82.2 14 0.0003 39.8 11.1 11 111-121 395-405 (594)
126 PF09755 DUF2046: Uncharacteri 82.1 23 0.00049 35.5 11.9 40 82-124 254-293 (310)
127 PF10168 Nup88: Nuclear pore c 82.1 11 0.00024 41.2 10.6 60 53-116 546-606 (717)
128 COG1196 Smc Chromosome segrega 81.9 28 0.0006 39.8 13.9 35 90-124 447-481 (1163)
129 PF06120 Phage_HK97_TLTM: Tail 81.8 26 0.00055 34.9 12.1 76 47-122 71-164 (301)
130 TIGR00606 rad50 rad50. This fa 81.8 24 0.00053 40.7 13.6 52 30-81 874-926 (1311)
131 PF09798 LCD1: DNA damage chec 80.9 7.2 0.00016 42.4 8.6 55 55-109 2-60 (654)
132 TIGR03007 pepcterm_ChnLen poly 80.9 17 0.00036 36.9 10.8 88 43-130 275-382 (498)
133 PF09486 HrpB7: Bacterial type 80.9 7.9 0.00017 35.1 7.6 52 40-91 83-140 (158)
134 KOG0995 Centromere-associated 80.8 27 0.00059 37.6 12.5 91 40-131 284-385 (581)
135 KOG4674 Uncharacterized conser 80.6 15 0.00033 44.2 11.6 44 45-88 1309-1352(1822)
136 PF11544 Spc42p: Spindle pole 80.4 17 0.00036 29.7 8.5 52 48-103 3-54 (76)
137 PF10158 LOH1CR12: Tumour supp 80.3 15 0.00033 32.2 9.0 85 17-106 19-114 (131)
138 PF06818 Fez1: Fez1; InterPro 80.2 14 0.00031 34.8 9.3 68 49-116 30-100 (202)
139 TIGR02680 conserved hypothetic 80.0 16 0.00035 42.5 11.5 40 42-81 741-780 (1353)
140 PF14662 CCDC155: Coiled-coil 80.0 23 0.0005 33.3 10.5 62 47-108 64-128 (193)
141 PF04012 PspA_IM30: PspA/IM30 79.9 47 0.001 30.2 15.1 102 25-129 23-131 (221)
142 PF00170 bZIP_1: bZIP transcri 79.9 11 0.00023 28.4 6.9 20 61-80 23-42 (64)
143 TIGR01005 eps_transp_fam exopo 79.7 17 0.00038 38.9 11.0 33 48-80 300-332 (754)
144 PF09789 DUF2353: Uncharacteri 79.7 10 0.00022 37.9 8.6 74 42-115 78-152 (319)
145 TIGR01843 type_I_hlyD type I s 79.7 61 0.0013 31.3 15.1 41 41-81 135-175 (423)
146 TIGR00634 recN DNA repair prot 79.6 12 0.00026 39.1 9.6 48 83-130 340-392 (563)
147 PF05781 MRVI1: MRVI1 protein; 79.6 29 0.00063 37.2 12.2 99 26-125 196-325 (538)
148 PF11932 DUF3450: Protein of u 79.4 56 0.0012 30.7 13.7 50 28-78 21-70 (251)
149 PF08826 DMPK_coil: DMPK coile 79.1 28 0.00061 27.1 9.1 56 46-109 4-59 (61)
150 PF10779 XhlA: Haemolysin XhlA 79.1 10 0.00022 29.5 6.8 46 68-117 3-48 (71)
151 PF04012 PspA_IM30: PspA/IM30 79.0 39 0.00083 30.8 11.6 48 15-63 24-71 (221)
152 PF06005 DUF904: Protein of un 79.0 31 0.00067 27.5 9.7 7 68-74 8-14 (72)
153 PF11740 KfrA_N: Plasmid repli 78.8 16 0.00035 29.9 8.3 63 11-80 56-118 (120)
154 KOG0977 Nuclear envelope prote 78.7 37 0.0008 36.5 12.8 87 44-130 149-255 (546)
155 KOG0980 Actin-binding protein 78.7 43 0.00093 38.0 13.6 43 84-126 454-507 (980)
156 KOG4552 Vitamin-D-receptor int 78.6 15 0.00031 35.6 8.9 37 45-81 69-105 (272)
157 TIGR00634 recN DNA repair prot 78.3 7.5 0.00016 40.6 7.6 57 25-81 142-199 (563)
158 COG2433 Uncharacterized conser 78.2 34 0.00075 37.3 12.4 86 40-126 419-508 (652)
159 KOG0250 DNA repair protein RAD 78.1 19 0.00041 41.3 10.9 28 304-332 915-942 (1074)
160 PF05278 PEARLI-4: Arabidopsis 78.0 37 0.00081 33.4 11.7 64 50-113 193-259 (269)
161 KOG0244 Kinesin-like protein [ 78.0 12 0.00025 42.2 9.2 93 39-132 512-608 (913)
162 PF05529 Bap31: B-cell recepto 77.9 8.6 0.00019 34.5 7.0 68 40-111 122-190 (192)
163 PF02601 Exonuc_VII_L: Exonucl 77.9 57 0.0012 31.3 12.9 100 27-127 149-257 (319)
164 PF06156 DUF972: Protein of un 77.9 18 0.00038 30.8 8.4 26 85-110 32-57 (107)
165 KOG0249 LAR-interacting protei 77.8 18 0.00039 40.3 10.3 43 82-124 209-251 (916)
166 TIGR03495 phage_LysB phage lys 77.7 19 0.00042 31.9 8.8 33 49-81 18-50 (135)
167 PF14817 HAUS5: HAUS augmin-li 77.7 36 0.00077 37.1 12.5 76 44-119 80-165 (632)
168 PF10211 Ax_dynein_light: Axon 77.5 20 0.00043 32.9 9.3 25 94-118 161-185 (189)
169 PF04111 APG6: Autophagy prote 77.4 50 0.0011 32.6 12.6 40 42-81 42-81 (314)
170 PF14362 DUF4407: Domain of un 77.3 55 0.0012 31.3 12.6 33 49-81 134-166 (301)
171 COG5185 HEC1 Protein involved 77.1 28 0.00061 37.2 11.2 60 52-111 332-397 (622)
172 KOG0933 Structural maintenance 76.9 18 0.00039 41.5 10.2 79 45-123 845-926 (1174)
173 PRK10361 DNA recombination pro 76.7 42 0.00091 35.4 12.4 75 52-126 69-160 (475)
174 KOG0962 DNA repair protein RAD 76.6 25 0.00054 41.2 11.5 80 39-124 1011-1096(1294)
175 PF15290 Syntaphilin: Golgi-lo 76.6 37 0.0008 33.9 11.2 90 26-120 62-166 (305)
176 PF09744 Jnk-SapK_ap_N: JNK_SA 76.5 59 0.0013 29.4 12.1 72 45-116 52-123 (158)
177 TIGR01000 bacteriocin_acc bact 76.5 18 0.00038 36.7 9.4 26 44-69 237-262 (457)
178 PF05384 DegS: Sensor protein 76.4 59 0.0013 29.5 11.7 78 41-119 46-128 (159)
179 KOG0288 WD40 repeat protein Ti 76.3 26 0.00057 36.6 10.6 40 42-81 33-72 (459)
180 PF15619 Lebercilin: Ciliary p 76.1 38 0.00082 31.4 10.7 42 40-81 58-99 (194)
181 PRK02119 hypothetical protein; 76.1 17 0.00037 28.8 7.4 30 100-129 27-56 (73)
182 PRK12704 phosphodiesterase; Pr 76.0 74 0.0016 33.7 14.1 16 116-131 153-168 (520)
183 COG3334 Uncharacterized conser 75.8 38 0.00082 31.9 10.6 86 20-111 44-134 (192)
184 KOG4643 Uncharacterized coiled 75.7 20 0.00042 41.2 10.1 60 38-101 172-231 (1195)
185 PRK04863 mukB cell division pr 75.6 64 0.0014 38.5 14.7 23 39-61 317-339 (1486)
186 PRK10361 DNA recombination pro 75.6 1.1E+02 0.0023 32.5 14.9 30 283-312 379-408 (475)
187 TIGR03319 YmdA_YtgF conserved 75.4 78 0.0017 33.4 14.0 16 116-131 147-162 (514)
188 PRK10803 tol-pal system protei 75.4 22 0.00048 34.0 9.3 63 49-115 39-101 (263)
189 KOG4673 Transcription factor T 75.3 24 0.00053 39.2 10.5 37 44-80 496-532 (961)
190 PF05278 PEARLI-4: Arabidopsis 75.1 22 0.00049 34.9 9.3 86 19-109 168-262 (269)
191 PF05622 HOOK: HOOK protein; 75.1 0.94 2E-05 48.6 0.0 31 42-76 307-337 (713)
192 PF05377 FlaC_arch: Flagella a 74.5 11 0.00024 28.9 5.6 38 44-81 1-38 (55)
193 PRK13729 conjugal transfer pil 74.4 13 0.00028 39.2 8.0 18 59-76 71-88 (475)
194 TIGR01010 BexC_CtrB_KpsE polys 74.4 22 0.00047 34.8 9.2 84 40-130 211-305 (362)
195 PF04102 SlyX: SlyX; InterPro 74.3 21 0.00045 27.7 7.3 31 100-130 22-52 (69)
196 PRK04778 septation ring format 74.3 39 0.00086 35.6 11.6 70 62-131 280-376 (569)
197 PF04102 SlyX: SlyX; InterPro 73.8 23 0.00049 27.5 7.4 28 88-115 17-44 (69)
198 PRK00888 ftsB cell division pr 73.5 16 0.00035 30.6 7.0 39 86-124 38-76 (105)
199 PF14932 HAUS-augmin3: HAUS au 73.5 56 0.0012 31.1 11.5 38 43-80 68-105 (256)
200 PF04977 DivIC: Septum formati 73.5 17 0.00037 27.4 6.6 35 86-120 28-62 (80)
201 PF10174 Cast: RIM-binding pro 73.4 51 0.0011 36.7 12.6 41 41-81 334-374 (775)
202 PF04977 DivIC: Septum formati 73.2 16 0.00035 27.5 6.4 26 47-72 21-46 (80)
203 PF15035 Rootletin: Ciliary ro 73.2 37 0.0008 31.2 9.8 40 76-116 62-108 (182)
204 PF10146 zf-C4H2: Zinc finger- 73.2 89 0.0019 29.9 13.1 64 53-117 4-67 (230)
205 PF10211 Ax_dynein_light: Axon 73.1 76 0.0017 29.1 12.0 14 86-99 145-158 (189)
206 PF09730 BicD: Microtubule-ass 73.0 47 0.001 36.8 12.1 80 40-119 31-127 (717)
207 PF08647 BRE1: BRE1 E3 ubiquit 72.9 51 0.0011 27.0 9.8 44 47-91 28-71 (96)
208 PRK02793 phi X174 lysis protei 72.8 23 0.0005 27.9 7.3 28 102-129 28-55 (72)
209 PRK12705 hypothetical protein; 72.8 49 0.0011 35.1 11.8 72 60-131 73-156 (508)
210 KOG4687 Uncharacterized coiled 72.8 16 0.00034 36.7 7.8 79 50-129 30-116 (389)
211 PF13747 DUF4164: Domain of un 72.6 42 0.0009 27.5 9.0 25 82-106 53-77 (89)
212 PRK10803 tol-pal system protei 72.6 17 0.00037 34.8 7.8 61 40-100 37-100 (263)
213 COG5493 Uncharacterized conser 72.3 78 0.0017 30.4 11.8 59 13-80 2-62 (231)
214 PF08700 Vps51: Vps51/Vps67; 72.2 43 0.00094 25.9 9.8 51 61-115 34-84 (87)
215 PRK04863 mukB cell division pr 72.2 50 0.0011 39.3 12.8 48 266-315 490-547 (1486)
216 PF06698 DUF1192: Protein of u 72.2 7 0.00015 30.3 4.1 27 41-67 26-52 (59)
217 KOG0996 Structural maintenance 72.1 17 0.00036 42.2 8.6 50 82-131 907-970 (1293)
218 PRK01156 chromosome segregatio 71.9 49 0.0011 36.2 12.0 23 90-112 696-718 (895)
219 COG2919 Septum formation initi 71.9 61 0.0013 27.5 10.9 40 86-125 61-100 (117)
220 COG4026 Uncharacterized protei 71.9 33 0.00071 33.6 9.4 75 41-119 140-214 (290)
221 COG3524 KpsE Capsule polysacch 71.8 49 0.0011 33.7 10.9 88 25-122 213-323 (372)
222 PF15070 GOLGA2L5: Putative go 71.5 25 0.00054 38.1 9.5 57 55-115 6-62 (617)
223 KOG4674 Uncharacterized conser 71.4 45 0.00097 40.5 12.1 42 82-123 738-779 (1822)
224 COG3883 Uncharacterized protei 71.4 34 0.00073 33.6 9.6 57 59-115 33-92 (265)
225 KOG1962 B-cell receptor-associ 71.3 34 0.00074 32.7 9.4 56 46-105 154-209 (216)
226 PF07200 Mod_r: Modifier of ru 71.2 66 0.0014 27.6 11.7 44 38-81 43-86 (150)
227 KOG2991 Splicing regulator [RN 71.1 24 0.00052 35.1 8.5 71 36-106 229-309 (330)
228 PF08898 DUF1843: Domain of un 71.0 14 0.0003 28.3 5.4 36 82-117 17-52 (53)
229 PF07106 TBPIP: Tat binding pr 70.9 16 0.00035 32.2 6.8 63 46-110 75-137 (169)
230 COG1842 PspA Phage shock prote 70.8 99 0.0021 29.4 14.2 35 92-126 102-143 (225)
231 KOG4643 Uncharacterized coiled 70.7 43 0.00093 38.6 11.2 77 45-121 504-593 (1195)
232 TIGR01000 bacteriocin_acc bact 70.3 96 0.0021 31.5 13.0 39 40-78 162-200 (457)
233 KOG0406 Glutathione S-transfer 70.1 19 0.00041 34.6 7.4 57 19-81 87-146 (231)
234 KOG1853 LIS1-interacting prote 70.1 41 0.00089 33.5 9.8 65 44-108 92-169 (333)
235 cd00176 SPEC Spectrin repeats, 70.0 41 0.0009 28.2 8.8 40 40-79 76-115 (213)
236 PRK01156 chromosome segregatio 69.9 72 0.0015 35.0 12.7 7 308-314 874-880 (895)
237 PRK00106 hypothetical protein; 69.9 1.2E+02 0.0027 32.4 14.1 16 116-131 168-183 (535)
238 PRK04406 hypothetical protein; 69.6 34 0.00073 27.3 7.7 52 66-128 6-57 (75)
239 PF14282 FlxA: FlxA-like prote 69.5 26 0.00056 29.3 7.4 59 63-122 18-77 (106)
240 PF05529 Bap31: B-cell recepto 69.5 44 0.00095 30.0 9.3 69 41-122 116-184 (192)
241 PRK00286 xseA exodeoxyribonucl 69.4 1E+02 0.0022 31.2 12.8 54 28-81 267-322 (438)
242 TIGR02680 conserved hypothetic 69.2 64 0.0014 37.8 12.7 40 42-81 275-314 (1353)
243 PF12777 MT: Microtubule-bindi 69.2 44 0.00095 33.0 10.0 25 86-110 253-277 (344)
244 KOG3650 Predicted coiled-coil 69.1 23 0.00051 30.6 7.0 29 82-110 77-105 (120)
245 PRK02793 phi X174 lysis protei 69.1 25 0.00053 27.8 6.7 20 91-110 31-50 (72)
246 PRK13169 DNA replication intia 68.7 38 0.00082 29.1 8.3 23 86-108 33-55 (110)
247 PF05008 V-SNARE: Vesicle tran 68.3 48 0.001 25.4 8.2 53 60-116 21-74 (79)
248 TIGR02132 phaR_Bmeg polyhydrox 67.9 59 0.0013 30.6 9.9 58 40-97 76-146 (189)
249 PF04849 HAP1_N: HAP1 N-termin 67.7 1.1E+02 0.0023 30.8 12.3 84 32-115 156-253 (306)
250 PF04100 Vps53_N: Vps53-like, 67.7 56 0.0012 33.1 10.6 26 102-127 84-109 (383)
251 PF13374 TPR_10: Tetratricopep 67.5 2.7 5.9E-05 27.1 0.9 39 282-320 4-42 (42)
252 PRK10869 recombination and rep 67.3 27 0.00059 36.8 8.6 54 24-77 137-198 (553)
253 PRK00409 recombination and DNA 67.2 1E+02 0.0022 34.2 13.2 51 30-81 504-554 (782)
254 PF10226 DUF2216: Uncharacteri 67.1 98 0.0021 29.3 11.2 52 52-103 22-76 (195)
255 TIGR03752 conj_TIGR03752 integ 67.1 59 0.0013 34.4 10.9 32 47-78 63-94 (472)
256 PF14193 DUF4315: Domain of un 66.4 53 0.0011 26.9 8.3 61 44-124 2-62 (83)
257 PRK00295 hypothetical protein; 66.4 47 0.001 25.9 7.8 29 101-129 24-52 (68)
258 PRK00578 prfB peptide chain re 66.4 1.1E+02 0.0024 31.3 12.4 90 32-123 12-117 (367)
259 COG0419 SbcC ATPase involved i 66.4 50 0.0011 36.6 10.8 77 50-129 481-560 (908)
260 PF06657 Cep57_MT_bd: Centroso 66.3 33 0.00072 27.5 7.1 64 39-109 13-77 (79)
261 TIGR00020 prfB peptide chain r 66.1 70 0.0015 32.6 10.9 86 31-116 11-112 (364)
262 KOG4673 Transcription factor T 65.9 50 0.0011 36.9 10.3 20 57-76 446-465 (961)
263 PLN03188 kinesin-12 family pro 65.9 73 0.0016 37.6 12.0 54 68-125 1201-1255(1320)
264 KOG1853 LIS1-interacting prote 65.8 63 0.0014 32.2 10.1 45 86-130 95-139 (333)
265 PF06476 DUF1090: Protein of u 65.8 37 0.00079 29.2 7.7 51 28-81 31-87 (115)
266 PF02841 GBP_C: Guanylate-bind 65.7 74 0.0016 30.7 10.6 71 48-121 188-258 (297)
267 KOG0241 Kinesin-like protein [ 65.6 33 0.00071 39.7 9.1 51 31-81 346-403 (1714)
268 PF02388 FemAB: FemAB family; 65.4 39 0.00084 34.1 9.0 54 65-119 243-296 (406)
269 smart00338 BRLZ basic region l 65.4 25 0.00055 26.4 6.0 25 92-116 36-60 (65)
270 smart00502 BBC B-Box C-termina 65.4 67 0.0015 25.5 13.1 26 101-126 77-102 (127)
271 COG1570 XseA Exonuclease VII, 65.3 1.3E+02 0.0027 31.7 12.7 72 10-81 236-323 (440)
272 PF13514 AAA_27: AAA domain 64.9 58 0.0013 37.0 11.1 90 32-122 114-214 (1111)
273 COG5374 Uncharacterized conser 64.9 15 0.00032 34.5 5.4 36 45-80 138-173 (192)
274 PF13094 CENP-Q: CENP-Q, a CEN 64.7 86 0.0019 27.4 10.0 75 45-130 22-96 (160)
275 PF12240 Angiomotin_C: Angiomo 64.6 11 0.00023 35.8 4.6 31 42-72 135-165 (205)
276 PRK04406 hypothetical protein; 64.5 50 0.0011 26.4 7.7 42 64-109 11-52 (75)
277 PRK04778 septation ring format 64.5 61 0.0013 34.2 10.5 26 86-111 387-412 (569)
278 PF06637 PV-1: PV-1 protein (P 64.4 68 0.0015 33.5 10.4 52 30-81 265-316 (442)
279 COG1777 Predicted transcriptio 64.4 45 0.00098 32.0 8.6 70 52-123 120-192 (217)
280 smart00338 BRLZ basic region l 64.2 53 0.0012 24.6 7.5 38 61-102 23-60 (65)
281 PF11488 Lge1: Transcriptional 64.1 59 0.0013 25.9 8.1 30 52-81 25-54 (80)
282 PF07926 TPR_MLP1_2: TPR/MLP1/ 64.0 93 0.002 26.6 10.2 31 43-73 17-47 (132)
283 PF04582 Reo_sigmaC: Reovirus 64.0 16 0.00034 36.9 5.8 27 90-116 127-153 (326)
284 KOG0978 E3 ubiquitin ligase in 64.0 1.5E+02 0.0032 33.1 13.4 112 14-125 378-518 (698)
285 KOG3119 Basic region leucine z 64.0 30 0.00065 33.4 7.6 93 35-127 164-260 (269)
286 PF13747 DUF4164: Domain of un 63.7 81 0.0018 25.8 10.2 32 91-122 41-72 (89)
287 PRK12704 phosphodiesterase; Pr 63.7 2E+02 0.0043 30.6 14.0 9 271-279 285-293 (520)
288 PRK10807 paraquat-inducible pr 63.6 1.4E+02 0.003 31.8 13.0 94 20-115 406-516 (547)
289 PF06156 DUF972: Protein of un 63.6 44 0.00096 28.4 7.7 47 71-117 8-57 (107)
290 PF02994 Transposase_22: L1 tr 63.4 16 0.00035 36.7 5.9 69 41-109 103-171 (370)
291 PF06103 DUF948: Bacterial pro 63.3 73 0.0016 25.2 12.4 80 36-115 5-87 (90)
292 KOG0980 Actin-binding protein 63.3 76 0.0016 36.2 11.2 21 270-299 691-711 (980)
293 TIGR00237 xseA exodeoxyribonuc 63.1 1.6E+02 0.0034 30.3 12.9 53 29-81 263-317 (432)
294 PF09787 Golgin_A5: Golgin sub 63.0 43 0.00092 35.0 9.0 23 40-62 113-135 (511)
295 PRK13729 conjugal transfer pil 62.9 28 0.00062 36.7 7.6 16 65-80 70-85 (475)
296 PRK04325 hypothetical protein; 62.7 50 0.0011 26.2 7.4 39 66-108 11-49 (74)
297 COG3879 Uncharacterized protei 62.7 40 0.00086 32.9 8.1 18 92-109 67-84 (247)
298 PF13864 Enkurin: Calmodulin-b 62.2 18 0.00039 29.6 5.0 56 60-117 40-95 (98)
299 PRK11448 hsdR type I restricti 62.2 58 0.0013 37.6 10.5 64 48-115 147-210 (1123)
300 PRK00888 ftsB cell division pr 62.2 35 0.00077 28.6 6.8 30 86-115 31-60 (105)
301 PF05769 DUF837: Protein of un 62.1 1.3E+02 0.0028 27.7 11.9 38 89-126 70-108 (181)
302 PF05010 TACC: Transforming ac 61.8 94 0.002 29.4 10.2 62 49-110 22-90 (207)
303 PRK00736 hypothetical protein; 61.6 59 0.0013 25.4 7.5 15 66-80 7-21 (68)
304 TIGR03319 YmdA_YtgF conserved 61.5 2.2E+02 0.0048 30.1 14.0 7 272-278 280-286 (514)
305 TIGR02894 DNA_bind_RsfA transc 61.4 33 0.0007 31.5 6.9 30 86-115 101-130 (161)
306 PF06246 Isy1: Isy1-like splic 61.3 35 0.00075 33.2 7.5 59 51-109 38-98 (255)
307 PRK13169 DNA replication intia 61.0 49 0.0011 28.4 7.5 48 69-116 6-56 (110)
308 PRK00591 prfA peptide chain re 60.9 1E+02 0.0023 31.3 11.1 89 42-130 5-110 (359)
309 TIGR02231 conserved hypothetic 60.9 1.1E+02 0.0024 31.7 11.5 37 82-118 138-174 (525)
310 PF05667 DUF812: Protein of un 60.9 95 0.0021 33.6 11.3 87 41-127 340-429 (594)
311 TIGR00618 sbcc exonuclease Sbc 60.7 1.9E+02 0.0041 32.8 14.0 32 21-52 172-203 (1042)
312 PF02183 HALZ: Homeobox associ 60.6 39 0.00084 24.7 5.9 26 86-111 16-41 (45)
313 PF03961 DUF342: Protein of un 60.6 82 0.0018 32.1 10.4 28 101-128 380-407 (451)
314 KOG0249 LAR-interacting protei 60.5 32 0.0007 38.4 7.8 59 43-101 91-151 (916)
315 KOG0976 Rho/Rac1-interacting s 60.3 59 0.0013 37.0 9.7 73 46-118 326-408 (1265)
316 COG3883 Uncharacterized protei 60.3 95 0.0021 30.6 10.3 59 48-106 36-97 (265)
317 KOG0996 Structural maintenance 60.2 64 0.0014 37.8 10.2 39 21-59 772-815 (1293)
318 TIGR01069 mutS2 MutS2 family p 60.2 1.7E+02 0.0037 32.4 13.3 50 30-80 499-548 (771)
319 PF11285 DUF3086: Protein of u 60.1 22 0.00047 35.1 5.9 58 65-129 5-63 (283)
320 PF05622 HOOK: HOOK protein; 60.0 2.9 6.4E-05 44.9 0.0 89 42-131 238-342 (713)
321 PF11802 CENP-K: Centromere-as 59.9 1.9E+02 0.004 28.7 12.6 28 105-132 156-183 (268)
322 PF10234 Cluap1: Clusterin-ass 59.9 1.1E+02 0.0023 30.2 10.5 67 48-114 142-208 (267)
323 PF09787 Golgin_A5: Golgin sub 59.6 24 0.00051 36.8 6.5 72 37-112 356-429 (511)
324 PF06548 Kinesin-related: Kine 59.3 1.5E+02 0.0033 31.5 12.0 10 47-56 389-398 (488)
325 KOG2417 Predicted G-protein co 59.1 30 0.00065 35.8 6.9 30 99-128 245-274 (462)
326 PF01576 Myosin_tail_1: Myosin 59.0 3.1 6.8E-05 46.0 0.0 91 39-129 260-361 (859)
327 PF04899 MbeD_MobD: MbeD/MobD 58.8 92 0.002 24.8 9.2 44 37-80 15-58 (70)
328 PF11570 E2R135: Coiled-coil r 58.5 46 0.001 29.8 7.1 53 45-97 3-55 (136)
329 COG4372 Uncharacterized protei 58.3 99 0.0021 32.5 10.4 70 45-118 212-281 (499)
330 PRK00846 hypothetical protein; 58.0 58 0.0013 26.5 7.1 30 101-130 32-61 (77)
331 KOG0999 Microtubule-associated 57.9 68 0.0015 35.1 9.5 79 41-119 105-200 (772)
332 TIGR01554 major_cap_HK97 phage 57.9 57 0.0012 32.1 8.5 8 115-122 86-93 (378)
333 PF10205 KLRAQ: Predicted coil 57.8 53 0.0011 28.1 7.1 49 52-104 28-76 (102)
334 PF14661 HAUS6_N: HAUS augmin- 57.8 1.7E+02 0.0037 27.6 11.5 57 25-81 139-195 (247)
335 KOG0963 Transcription factor/C 57.7 84 0.0018 34.4 10.2 77 51-127 279-360 (629)
336 PF10226 DUF2216: Uncharacteri 57.6 33 0.00072 32.4 6.4 51 81-132 22-73 (195)
337 KOG4074 Leucine zipper nuclear 57.6 98 0.0021 31.6 10.0 67 42-108 136-203 (383)
338 PF13166 AAA_13: AAA domain 57.5 2.5E+02 0.0055 29.7 13.7 29 303-334 657-685 (712)
339 TIGR00019 prfA peptide chain r 57.4 1.6E+02 0.0035 30.1 11.7 31 99-129 78-109 (360)
340 PF12761 End3: Actin cytoskele 57.2 1.8E+02 0.0038 27.6 11.1 27 49-75 95-121 (195)
341 PF03961 DUF342: Protein of un 57.1 48 0.001 33.8 8.1 34 88-121 374-407 (451)
342 KOG0614 cGMP-dependent protein 56.9 37 0.00079 37.0 7.3 46 36-81 17-62 (732)
343 PF07798 DUF1640: Protein of u 56.8 1.5E+02 0.0032 26.6 12.4 11 50-60 58-68 (177)
344 PF14193 DUF4315: Domain of un 56.7 51 0.0011 27.1 6.6 9 69-77 27-35 (83)
345 PF10481 CENP-F_N: Cenp-F N-te 56.6 60 0.0013 32.4 8.3 64 43-113 18-91 (307)
346 KOG0612 Rho-associated, coiled 56.5 1E+02 0.0023 36.3 11.1 46 86-131 620-665 (1317)
347 PF07111 HCR: Alpha helical co 56.5 1.7E+02 0.0036 32.7 12.2 47 27-81 541-588 (739)
348 PF04859 DUF641: Plant protein 56.4 37 0.0008 30.0 6.2 31 47-77 77-107 (131)
349 KOG3859 Septins (P-loop GTPase 56.4 63 0.0014 32.9 8.5 31 87-117 375-405 (406)
350 PF11855 DUF3375: Protein of u 56.4 80 0.0017 32.8 9.6 93 38-131 117-217 (478)
351 PF07798 DUF1640: Protein of u 56.3 1.5E+02 0.0033 26.6 12.7 17 65-81 52-68 (177)
352 PF11500 Cut12: Spindle pole b 56.0 18 0.00038 32.9 4.2 33 49-81 104-136 (152)
353 PRK09841 cryptic autophosphory 56.0 1.7E+02 0.0037 31.8 12.4 29 45-73 269-297 (726)
354 KOG2629 Peroxisomal membrane a 55.8 91 0.002 31.3 9.4 64 47-117 119-182 (300)
355 PF02050 FliJ: Flagellar FliJ 55.8 96 0.0021 24.1 10.3 69 48-116 3-72 (123)
356 PF04871 Uso1_p115_C: Uso1 / p 55.7 1.4E+02 0.0031 26.1 10.7 70 42-115 33-103 (136)
357 PF13935 Ead_Ea22: Ead/Ea22-li 55.7 1.2E+02 0.0025 26.5 9.1 71 42-116 66-139 (139)
358 PF09432 THP2: Tho complex sub 55.6 1.4E+02 0.0029 26.8 9.5 71 48-122 50-130 (132)
359 PF13815 Dzip-like_N: Iguana/D 55.6 40 0.00087 28.4 6.1 28 84-111 89-116 (118)
360 PF09728 Taxilin: Myosin-like 55.3 1.1E+02 0.0025 30.1 10.1 69 40-109 26-98 (309)
361 PF04949 Transcrip_act: Transc 55.3 1.7E+02 0.0037 26.9 11.1 84 30-113 43-143 (159)
362 PF06730 FAM92: FAM92 protein; 55.3 48 0.001 31.8 7.2 73 57-129 4-94 (219)
363 PRK04325 hypothetical protein; 55.3 82 0.0018 25.0 7.5 54 66-130 4-57 (74)
364 PF13874 Nup54: Nucleoporin co 55.2 78 0.0017 27.5 8.0 33 40-72 34-66 (141)
365 PF05761 5_nucleotid: 5' nucle 55.2 38 0.00083 35.2 7.1 36 45-81 324-359 (448)
366 PF07794 DUF1633: Protein of u 55.0 1.1E+02 0.0024 33.2 10.4 89 38-126 592-704 (790)
367 KOG0933 Structural maintenance 55.0 1.3E+02 0.0027 35.1 11.3 57 25-81 712-779 (1174)
368 TIGR00293 prefoldin, archaeal 54.6 1.3E+02 0.0027 25.1 11.1 39 89-127 86-124 (126)
369 PF05859 Mis12: Mis12 protein; 54.5 10 0.00022 33.1 2.4 55 11-70 86-142 (144)
370 cd07638 BAR_ACAP2 The Bin/Amph 54.3 1.3E+02 0.0029 28.1 9.9 81 44-128 3-86 (200)
371 KOG0971 Microtubule-associated 54.3 76 0.0016 36.5 9.4 39 86-127 476-514 (1243)
372 KOG0517 Beta-spectrin [Cytoske 54.1 1.7E+02 0.0037 36.4 12.4 103 32-138 939-1058(2473)
373 PF03938 OmpH: Outer membrane 54.1 1.1E+02 0.0023 26.2 8.6 46 30-75 22-68 (158)
374 PRK06975 bifunctional uroporph 53.9 1.9E+02 0.0041 31.4 12.2 50 82-131 385-439 (656)
375 PF05308 Mito_fiss_reg: Mitoch 53.8 12 0.00026 36.1 3.1 24 37-60 116-139 (253)
376 TIGR03545 conserved hypothetic 53.5 1.1E+02 0.0024 32.7 10.3 65 63-127 190-268 (555)
377 PF14362 DUF4407: Domain of un 53.5 2.1E+02 0.0045 27.4 13.5 31 41-71 133-163 (301)
378 PF09302 XLF: XLF (XRCC4-like 53.2 18 0.00039 31.8 3.8 43 31-74 128-170 (171)
379 KOG0979 Structural maintenance 53.2 1.2E+02 0.0027 35.0 10.9 75 42-120 628-702 (1072)
380 KOG0972 Huntingtin interacting 53.1 57 0.0012 33.1 7.6 59 41-99 264-325 (384)
381 PF04582 Reo_sigmaC: Reovirus 53.0 12 0.00026 37.6 3.0 87 42-128 55-151 (326)
382 PF00170 bZIP_1: bZIP transcri 53.0 95 0.0021 23.2 8.8 31 86-116 30-60 (64)
383 PRK09737 EcoKI restriction-mod 52.9 30 0.00064 33.9 5.6 41 88-128 372-416 (461)
384 PF06818 Fez1: Fez1; InterPro 52.9 1.4E+02 0.003 28.4 9.8 74 51-124 11-105 (202)
385 PF10046 BLOC1_2: Biogenesis o 52.8 1.3E+02 0.0028 24.7 9.9 37 40-76 32-68 (99)
386 PF05557 MAD: Mitotic checkpoi 52.6 53 0.0012 35.5 7.9 10 284-293 704-713 (722)
387 KOG1899 LAR transmembrane tyro 52.6 3.8E+02 0.0083 30.1 17.1 84 40-123 228-318 (861)
388 COG1340 Uncharacterized archae 52.5 1.4E+02 0.0029 30.0 10.0 65 47-115 31-95 (294)
389 PF10234 Cluap1: Clusterin-ass 52.5 82 0.0018 31.0 8.4 26 82-107 169-194 (267)
390 PF14073 Cep57_CLD: Centrosome 52.4 2E+02 0.0044 26.9 11.5 26 28-53 78-103 (178)
391 PF11221 Med21: Subunit 21 of 52.2 1.6E+02 0.0035 25.7 9.8 79 26-113 63-142 (144)
392 KOG0612 Rho-associated, coiled 52.2 1.6E+02 0.0035 34.8 11.7 40 266-311 617-656 (1317)
393 KOG2896 UV radiation resistanc 52.1 2.9E+02 0.0064 28.6 12.8 28 43-70 80-107 (377)
394 PF12128 DUF3584: Protein of u 52.1 4.4E+02 0.0095 30.7 15.4 47 82-128 490-536 (1201)
395 PF09311 Rab5-bind: Rabaptin-l 52.1 12 0.00026 33.9 2.6 71 35-109 7-77 (181)
396 PF05266 DUF724: Protein of un 52.1 2E+02 0.0043 26.7 11.3 25 90-114 125-149 (190)
397 PF14257 DUF4349: Domain of un 51.9 54 0.0012 30.7 7.0 56 41-105 137-192 (262)
398 PF03148 Tektin: Tektin family 51.8 2.6E+02 0.0057 28.2 12.2 84 29-117 202-286 (384)
399 COG3074 Uncharacterized protei 51.7 1.3E+02 0.0028 24.6 8.0 18 89-106 53-70 (79)
400 KOG3863 bZIP transcription fac 51.6 40 0.00087 36.6 6.7 54 73-133 513-566 (604)
401 PRK00846 hypothetical protein; 51.6 91 0.002 25.4 7.2 6 114-119 56-61 (77)
402 KOG0978 E3 ubiquitin ligase in 51.5 1.6E+02 0.0034 32.8 11.1 80 40-122 535-617 (698)
403 PRK15178 Vi polysaccharide exp 51.2 2.8E+02 0.0061 29.1 12.5 45 37-81 280-331 (434)
404 PHA03185 UL14 tegument protein 51.2 95 0.0021 29.7 8.3 59 28-89 53-111 (214)
405 PRK00295 hypothetical protein; 51.2 76 0.0016 24.8 6.6 41 66-110 7-47 (68)
406 PF07926 TPR_MLP1_2: TPR/MLP1/ 51.2 1.6E+02 0.0034 25.2 12.1 33 43-75 3-35 (132)
407 KOG2391 Vacuolar sorting prote 51.2 1.5E+02 0.0033 30.4 10.3 71 44-121 208-278 (365)
408 PRK00736 hypothetical protein; 51.1 64 0.0014 25.2 6.2 10 69-78 3-12 (68)
409 cd07601 BAR_APPL The Bin/Amphi 50.9 1.4E+02 0.003 28.3 9.5 80 43-129 2-91 (215)
410 PF07111 HCR: Alpha helical co 50.9 1.2E+02 0.0025 33.9 10.0 84 30-113 156-259 (739)
411 KOG0018 Structural maintenance 50.8 97 0.0021 36.0 9.7 77 53-130 265-351 (1141)
412 KOG2218 ER to golgi transport 50.8 38 0.00082 37.6 6.4 92 40-132 29-134 (737)
413 COG3937 Uncharacterized conser 50.7 59 0.0013 28.2 6.4 55 63-117 49-104 (108)
414 PRK08476 F0F1 ATP synthase sub 50.3 1.3E+02 0.0029 26.0 8.7 13 93-105 122-134 (141)
415 KOG4593 Mitotic checkpoint pro 50.2 1.9E+02 0.0042 32.2 11.5 75 45-124 188-262 (716)
416 TIGR00012 L29 ribosomal protei 50.2 35 0.00076 25.4 4.4 47 66-120 7-54 (55)
417 PRK08032 fliD flagellar cappin 50.1 1.6E+02 0.0034 30.5 10.5 51 54-104 410-460 (462)
418 PF13805 Pil1: Eisosome compon 50.0 2.2E+02 0.0048 28.1 11.0 84 41-124 101-197 (271)
419 PF14915 CCDC144C: CCDC144C pr 50.0 2.5E+02 0.0055 28.3 11.4 78 39-116 217-298 (305)
420 PF06705 SF-assemblin: SF-asse 49.8 2.2E+02 0.0049 26.6 11.2 74 40-117 89-164 (247)
421 PF15272 BBP1_C: Spindle pole 49.7 1.1E+02 0.0024 28.9 8.5 19 60-78 103-121 (196)
422 KOG0837 Transcriptional activa 49.7 94 0.002 30.9 8.3 42 83-127 228-269 (279)
423 cd00632 Prefoldin_beta Prefold 49.7 50 0.0011 27.1 5.6 16 62-77 61-76 (105)
424 KOG1510 RNA polymerase II holo 49.7 1.5E+02 0.0032 26.8 8.9 59 11-74 39-101 (139)
425 PF07246 Phlebovirus_NSM: Phle 49.5 1.2E+02 0.0026 29.9 9.0 26 56-81 160-185 (264)
426 CHL00154 rpl29 ribosomal prote 49.5 52 0.0011 25.8 5.4 49 65-121 13-62 (67)
427 PRK13922 rod shape-determining 49.4 2.3E+02 0.0051 26.7 12.4 39 83-121 70-108 (276)
428 TIGR02449 conserved hypothetic 49.4 64 0.0014 25.5 5.9 26 86-111 11-36 (65)
429 PF05600 DUF773: Protein of un 49.4 1.1E+02 0.0023 32.4 9.3 59 52-114 434-492 (507)
430 PRK02119 hypothetical protein; 49.1 1.2E+02 0.0027 24.0 7.5 25 86-110 27-51 (73)
431 PF06320 GCN5L1: GCN5-like pro 48.8 1.8E+02 0.0038 25.1 10.9 46 77-122 35-80 (121)
432 PF10458 Val_tRNA-synt_C: Valy 48.7 95 0.0021 23.7 6.7 27 48-74 2-28 (66)
433 PF04363 DUF496: Protein of un 48.7 1.3E+02 0.0029 25.5 7.9 56 53-108 15-93 (95)
434 TIGR02977 phageshock_pspA phag 48.5 2.3E+02 0.0049 26.3 14.3 29 88-116 98-126 (219)
435 PRK11519 tyrosine kinase; Prov 48.4 2.4E+02 0.0052 30.7 12.0 28 104-131 371-398 (719)
436 PF15254 CCDC14: Coiled-coil d 48.4 1.1E+02 0.0025 34.4 9.5 74 37-112 383-478 (861)
437 PF05701 WEMBL: Weak chloropla 48.4 2.3E+02 0.0049 29.9 11.5 41 41-81 279-319 (522)
438 PF12998 ING: Inhibitor of gro 48.1 1.4E+02 0.003 23.7 10.5 71 45-115 10-98 (105)
439 TIGR01069 mutS2 MutS2 family p 47.9 1.8E+02 0.0039 32.3 11.1 8 12-19 492-499 (771)
440 PF12072 DUF3552: Domain of un 47.9 2.2E+02 0.0048 26.0 14.5 21 61-81 75-95 (201)
441 PF13166 AAA_13: AAA domain 47.7 3E+02 0.0064 29.2 12.3 11 286-296 616-626 (712)
442 KOG0243 Kinesin-like protein [ 47.4 2.8E+02 0.006 32.3 12.5 79 21-107 430-515 (1041)
443 KOG0964 Structural maintenance 47.4 1.6E+02 0.0035 34.2 10.6 70 42-115 410-479 (1200)
444 PF15272 BBP1_C: Spindle pole 47.3 1.8E+02 0.0039 27.5 9.5 48 62-109 80-127 (196)
445 PF04340 DUF484: Protein of un 47.3 1.1E+02 0.0024 28.2 8.1 43 90-132 65-110 (225)
446 KOG4196 bZIP transcription fac 47.2 1.7E+02 0.0038 26.3 8.9 69 53-122 35-107 (135)
447 PHA00489 scaffolding protein 47.1 76 0.0016 27.0 6.3 49 60-112 23-71 (101)
448 PF12808 Mto2_bdg: Micro-tubul 47.1 16 0.00035 27.7 2.1 28 33-60 19-46 (52)
449 PRK10869 recombination and rep 47.1 99 0.0022 32.7 8.7 50 82-131 334-388 (553)
450 PF14992 TMCO5: TMCO5 family 47.1 1.2E+02 0.0026 30.1 8.7 79 45-123 65-171 (280)
451 PF12004 DUF3498: Domain of un 47.0 6.4 0.00014 41.5 0.0 58 43-100 369-433 (495)
452 PRK00106 hypothetical protein; 47.0 4E+02 0.0087 28.7 14.0 36 92-127 125-160 (535)
453 PF02403 Seryl_tRNA_N: Seryl-t 46.9 1.6E+02 0.0034 23.9 8.4 27 91-117 69-95 (108)
454 KOG1029 Endocytic adaptor prot 46.5 2.5E+02 0.0054 32.2 11.7 80 45-124 488-591 (1118)
455 PTZ00419 valyl-tRNA synthetase 46.3 52 0.0011 37.1 6.8 27 48-74 927-953 (995)
456 PF11418 Scaffolding_pro: Phi2 46.2 1.5E+02 0.0033 25.1 7.9 49 60-112 22-70 (97)
457 PF02996 Prefoldin: Prefoldin 46.1 46 0.00099 27.2 4.9 64 12-77 55-118 (120)
458 PHA03332 membrane glycoprotein 45.9 2.9E+02 0.0063 32.6 12.3 55 43-97 905-963 (1328)
459 PF04859 DUF641: Plant protein 45.8 56 0.0012 28.9 5.7 29 47-75 91-119 (131)
460 TIGR02977 phageshock_pspA phag 45.7 2.5E+02 0.0054 26.0 11.1 39 86-124 89-127 (219)
461 COG3206 GumC Uncharacterized p 45.5 2.1E+02 0.0045 29.1 10.4 29 104-132 374-402 (458)
462 KOG0239 Kinesin (KAR3 subfamil 45.4 3.2E+02 0.0069 30.1 12.4 65 66-130 243-313 (670)
463 KOG0964 Structural maintenance 45.3 1.9E+02 0.0042 33.7 10.8 101 27-127 213-331 (1200)
464 PF05335 DUF745: Protein of un 45.2 1.3E+02 0.0029 28.0 8.3 49 42-94 122-170 (188)
465 PF10392 COG5: Golgi transport 45.2 1.4E+02 0.0031 25.5 8.0 42 39-80 75-116 (132)
466 PF09728 Taxilin: Myosin-like 44.7 3.2E+02 0.007 27.0 12.8 31 285-315 203-240 (309)
467 PF04201 TPD52: Tumour protein 44.7 77 0.0017 29.2 6.5 35 46-80 25-59 (162)
468 cd08915 V_Alix_like Protein-in 44.6 2.5E+02 0.0055 27.4 10.5 106 15-128 170-302 (342)
469 PF07989 Microtub_assoc: Micro 44.3 1.6E+02 0.0036 23.5 9.2 52 65-116 15-70 (75)
470 PF07544 Med9: RNA polymerase 44.2 41 0.00088 27.0 4.2 14 48-61 26-39 (83)
471 PF07956 DUF1690: Protein of U 44.1 1.7E+02 0.0037 26.0 8.5 42 11-52 7-51 (142)
472 COG5602 SIN3 Histone deacetyla 44.0 2E+02 0.0044 33.2 10.6 63 268-331 129-193 (1163)
473 PF12128 DUF3584: Protein of u 44.0 5.2E+02 0.011 30.1 14.3 39 43-81 621-659 (1201)
474 PRK05423 hypothetical protein; 43.8 1.4E+02 0.003 25.7 7.4 56 53-108 22-100 (104)
475 PF14282 FlxA: FlxA-like prote 43.8 1.2E+02 0.0026 25.3 7.1 42 40-81 23-68 (106)
476 PF10267 Tmemb_cc2: Predicted 43.8 3.9E+02 0.0085 27.7 12.3 89 39-129 222-329 (395)
477 PRK15422 septal ring assembly 43.3 1.9E+02 0.0041 23.9 9.7 22 87-108 51-72 (79)
478 COG4477 EzrA Negative regulato 43.2 2.4E+02 0.0053 30.6 10.7 83 43-125 347-436 (570)
479 KOG2129 Uncharacterized conser 43.1 1.5E+02 0.0033 31.5 9.1 49 88-139 189-237 (552)
480 PF00523 Fusion_gly: Fusion gl 43.0 2.5E+02 0.0055 29.8 10.9 74 33-116 105-178 (490)
481 PRK09841 cryptic autophosphory 42.9 1.8E+02 0.004 31.6 10.1 31 102-132 369-399 (726)
482 PF13863 DUF4200: Domain of un 42.9 1.9E+02 0.0041 23.8 13.1 87 39-125 28-117 (126)
483 cd07639 BAR_ACAP1 The Bin/Amph 42.8 1.6E+02 0.0036 27.6 8.5 81 44-128 3-86 (200)
484 PF14662 CCDC155: Coiled-coil 42.5 3E+02 0.0066 26.1 12.6 23 93-115 78-100 (193)
485 PRK03947 prefoldin subunit alp 42.4 76 0.0017 27.0 5.9 41 41-81 99-139 (140)
486 PF08781 DP: Transcription fac 42.2 1.1E+02 0.0025 27.4 7.1 33 45-77 3-35 (142)
487 KOG3091 Nuclear pore complex, 42.1 3.8E+02 0.0082 28.9 11.8 25 89-113 466-493 (508)
488 TIGR03545 conserved hypothetic 42.1 4.2E+02 0.0092 28.5 12.5 78 39-116 178-268 (555)
489 TIGR02894 DNA_bind_RsfA transc 42.1 2.7E+02 0.0059 25.7 9.6 28 88-115 110-137 (161)
490 PF09730 BicD: Microtubule-ass 42.0 3.3E+02 0.0072 30.4 11.9 35 277-314 595-631 (717)
491 KOG2629 Peroxisomal membrane a 42.0 1.5E+02 0.0033 29.8 8.5 26 39-64 132-157 (300)
492 PRK15422 septal ring assembly 42.0 2E+02 0.0043 23.8 7.8 30 86-115 29-58 (79)
493 PF05103 DivIVA: DivIVA protei 41.9 23 0.0005 29.3 2.6 43 84-126 27-69 (131)
494 PTZ00421 coronin; Provisional 41.8 37 0.00081 35.3 4.6 37 40-76 457-493 (493)
495 cd07637 BAR_ACAP3 The Bin/Amph 41.8 2.8E+02 0.0061 25.8 9.9 84 44-128 3-86 (200)
496 KOG0946 ER-Golgi vesicle-tethe 41.8 65 0.0014 36.5 6.6 82 35-116 840-938 (970)
497 KOG0999 Microtubule-associated 41.7 1.9E+02 0.0042 31.8 9.7 75 46-120 145-225 (772)
498 PF06705 SF-assemblin: SF-asse 41.7 3E+02 0.0065 25.8 12.2 80 41-122 10-94 (247)
499 PF03999 MAP65_ASE1: Microtubu 41.6 8.7 0.00019 40.8 0.0 78 45-126 209-287 (619)
500 KOG4005 Transcription factor X 41.4 2.6E+02 0.0057 27.7 9.9 71 41-116 75-145 (292)
No 1
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=96.93 E-value=0.0025 Score=45.41 Aligned_cols=46 Identities=17% Similarity=0.363 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChhHHHHHHHhh
Q 019884 283 YEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKDLYTIFEGLI 329 (334)
Q Consensus 283 YEQFsaFLANIKELNAhkQTREETL~KA~eIFG~~NkdLY~~FegLL 329 (334)
.|.|.+||..++.++.++.+++|...++.++|+. |+||...|...|
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~-hpdLl~~F~~Fl 46 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRG-HPDLLEEFNRFL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT--HHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-CHHHHHHHHhhC
Confidence 3789999999999999999999999999999996 899999998764
No 2
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=96.74 E-value=0.019 Score=58.25 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 55 LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
||.-...|+..-.|-|.|..++...+..--..|++|++.|.||+|+|+...-...|.++-|
T Consensus 315 l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql 375 (442)
T PF06637_consen 315 LQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQL 375 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443444444444444444444443332234588999999999999999988888887763
No 3
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.08 E-value=0.083 Score=47.81 Aligned_cols=61 Identities=18% Similarity=0.341 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHH
Q 019884 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT-VRKLQRDVSKL 115 (334)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~T-vKKL~RDvaKL 115 (334)
++..|...|.||+..+..|++-+..|.-++ ..+++...+|.+||+.|..- +++-++|..+|
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~----~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~m 192 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQL----NMLEEKLRKLEEENRELVERWMQRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444444444444444444333 36666666777777666543 34444554443
No 4
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.00 E-value=0.085 Score=49.11 Aligned_cols=68 Identities=26% Similarity=0.374 Sum_probs=40.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
...|+-+||.|+..|+++|++-+.. +..+...++. ++..+.+..++|.+||+.|...+.++...+..|
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~---~~~~~~~l~~----~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT---WNQRTAEMQQ----KVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999876533 2233333332 223444444556666666666665555555443
No 5
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.92 E-value=0.18 Score=44.30 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~------~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
|+=.-++-.|+..+|+.+..|-+...+++..|..|+.|+..||..|- ..+....++..+....+.+|-.-|.-|
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~L 85 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLL 85 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHH
Confidence 34445677899999999999999999999999999999999999986 222333333444444444444444444
Q ss_pred hhhHHHHH
Q 019884 109 QRDVSKLE 116 (334)
Q Consensus 109 ~RDvaKLE 116 (334)
--+|...+
T Consensus 86 Eeele~ae 93 (143)
T PF12718_consen 86 EEELEEAE 93 (143)
T ss_pred HHHHHHHH
Confidence 44444333
No 6
>PRK11637 AmiB activator; Provisional
Probab=95.90 E-value=0.12 Score=51.79 Aligned_cols=109 Identities=19% Similarity=0.287 Sum_probs=59.0
Q ss_pred CCCChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 019884 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------- 81 (334)
Q Consensus 11 ~f~Lp~eilavLPsDPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~--------- 81 (334)
-|.+-.-|+.+| |-++ .+.++++.-...++.++..+++++.+....|.+++.++..++.+|.
T Consensus 17 ~~~~~~~~~~~l-------l~~~--~~~~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~ 87 (428)
T PRK11637 17 RFAIRPILYASV-------LSAG--VLLCAFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQA 87 (428)
T ss_pred hhhhhhHHHHHH-------HHHH--HHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655 2221 2233333333455666666666666555555555555444444443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019884 82 -DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (334)
Q Consensus 82 -~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (334)
.+|....++...+.+|-+.|...++++..++.+++.--+.+|..+..
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666666666666665555555555554
No 7
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.2 Score=53.55 Aligned_cols=85 Identities=28% Similarity=0.404 Sum_probs=73.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
+++-.+|.+||.|++.|+..+-|.++.|..|+.+++.+...+. -.+.+-..+.+.|.++-..=...|.-|.|.+
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999999999988776 3455566778889888888889999999999
Q ss_pred HHHHHHHHHHH
Q 019884 113 SKLEVFRKTLV 123 (334)
Q Consensus 113 aKLE~FKk~Lm 123 (334)
++|+..++-..
T Consensus 505 ~~l~k~~~lE~ 515 (652)
T COG2433 505 AELRKMRKLEL 515 (652)
T ss_pred HHHHHHHhhhh
Confidence 99998887443
No 8
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=95.23 E-value=0.25 Score=39.16 Aligned_cols=24 Identities=42% Similarity=0.553 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 54 ALRSQLAEKDSRIAELQSQIESIY 77 (334)
Q Consensus 54 ~LR~~laEKd~~i~~Lq~r~~~le 77 (334)
.|-..|+|||..|+.|.+....|-
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLS 25 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLS 25 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHH
Confidence 467789999999999995555443
No 9
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.10 E-value=0.39 Score=41.50 Aligned_cols=63 Identities=21% Similarity=0.400 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 50 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
.++.+|+..+..-...+..|+++++.++..+. .+..+...|.++...+..++|.+..||.||.
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~----~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELA----SAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443 4444444444455555555555555555443
No 10
>PRK11637 AmiB activator; Provisional
Probab=95.02 E-value=0.44 Score=47.75 Aligned_cols=67 Identities=9% Similarity=0.181 Sum_probs=29.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (334)
.+..++.++..|..+|.+-...|.+++.++..++..+ ....++..++.++-+.+-..++++.|.+.+
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei----~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQI----DELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444333333 344444444444444444444444444444
No 11
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.72 E-value=0.4 Score=41.44 Aligned_cols=73 Identities=22% Similarity=0.410 Sum_probs=55.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLS----KENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~----kE~~sLa~TvKKL~RDvaKLE 116 (334)
=...|+..+.+|+.+++++++.+..++.+...++..+. ..++...+|..+|. .=+.....-+||-.+++.||.
T Consensus 67 d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 67 DIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667788899999999999999999999999888 77777777766654 344555666777777777774
No 12
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.46 E-value=0.4 Score=43.39 Aligned_cols=85 Identities=26% Similarity=0.438 Sum_probs=45.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
++.||..+..++..|+.++.++...|.+|+..+..|+..+. ..|..-...++.|..|-.+|-.+..-|..-+.||+.
T Consensus 93 l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 93 LAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999999998888888887776 444444445566677777777777777777777776
Q ss_pred HHHHHHhh
Q 019884 118 FRKTLVQS 125 (334)
Q Consensus 118 FKk~LmqS 125 (334)
=-+.|++-
T Consensus 173 En~~Lv~R 180 (194)
T PF08614_consen 173 ENRELVER 180 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 13
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.34 E-value=0.99 Score=41.69 Aligned_cols=87 Identities=23% Similarity=0.370 Sum_probs=49.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK---- 114 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK---- 114 (334)
...+..++..+..||..+.+....|.+.++++..+..+|. ..|....+...++.+....+.+.++++.+.+.+
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 141 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQ 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666666666666665 333333334444445555555555555555544
Q ss_pred HHHHHHHHHhhccc
Q 019884 115 LEVFRKTLVQSLKD 128 (334)
Q Consensus 115 LE~FKk~LmqSLqe 128 (334)
|..=++.|++.|..
T Consensus 142 l~~~r~~l~~~l~~ 155 (302)
T PF10186_consen 142 LARRRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556667666543
No 14
>PRK09039 hypothetical protein; Validated
Probab=94.23 E-value=0.75 Score=45.60 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=65.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ-RDVSKL 115 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~-RDvaKL 115 (334)
....|+..|+.+...++...+|....|.-|+.+++.|..+|. +-|..++++.......-+.|..-+.++- +.+..|
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l 192 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQEL 192 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888888888888888888888876 5555666666555555666666555554 347889
Q ss_pred HHHHHHHHhhcc
Q 019884 116 EVFRKTLVQSLK 127 (334)
Q Consensus 116 E~FKk~LmqSLq 127 (334)
+.||..+..-|.
T Consensus 193 ~~~~~~~~~~l~ 204 (343)
T PRK09039 193 NRYRSEFFGRLR 204 (343)
T ss_pred HHhHHHHHHHHH
Confidence 999999977775
No 15
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.69 E-value=1.8 Score=38.55 Aligned_cols=85 Identities=25% Similarity=0.375 Sum_probs=62.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 40 AISTRVSDLESEHSALRSQLAE-------KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laE-------Kd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
-+.-+|-+||+|.......+.. +.+.|..|+.+++.+. ..|.....|...|.+||..|.....+.+.-|
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt----~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELT----SELNQLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888766655432 2334445555555555 4555899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 019884 113 SKLEVFRKTLVQSLKD 128 (334)
Q Consensus 113 aKLE~FKk~LmqSLqe 128 (334)
.-||...-.+-.-|++
T Consensus 97 ~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 97 SELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 9999988766655554
No 16
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.55 E-value=1.2 Score=47.40 Aligned_cols=83 Identities=18% Similarity=0.360 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 019884 31 DVARKITSIAISTR------VSDLESEHSALRSQLAEKDSRIA-------ELQSQIESIYSSLS---DKLGQAQADKERL 94 (334)
Q Consensus 31 dlArkIts~A~atR------Vs~LE~E~~~LR~~laEKd~~i~-------~Lq~r~~~le~~L~---~rL~~a~~e~~kL 94 (334)
-=||+|..-+-+.| +.+|+.|+..||.++.++..... +...+++++|+++. .|.+..++|...|
T Consensus 95 ~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 95 ATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34677777665544 57888888888888888855443 44556667777776 8889999999999
Q ss_pred HHHHHHHHHHHHHHhhhHH
Q 019884 95 SKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 95 ~kE~~sLa~TvKKL~RDva 113 (334)
.+||..|-..+..+..+++
T Consensus 175 k~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 175 KAENSRLREELARARKQLD 193 (546)
T ss_pred HHHhhhhHHHHHHHHHHHH
Confidence 9999999888877765443
No 17
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.48 E-value=1.2 Score=42.72 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 019884 33 ARKITSIAISTRVSDLESEHSALRSQLA 60 (334)
Q Consensus 33 ArkIts~A~atRVs~LE~E~~~LR~~la 60 (334)
+..|.=-.|..-|+++|.|+..+|+++.
T Consensus 49 ~~~~e~e~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 49 ALEIELEDLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666666666666654
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=93.38 E-value=2.4 Score=45.52 Aligned_cols=33 Identities=24% Similarity=0.172 Sum_probs=16.3
Q ss_pred hcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHH
Q 019884 20 QVLPSDPFEQLDVARKITSIAISTRVSDLESEH 52 (334)
Q Consensus 20 avLPsDPyEQLdlArkIts~A~atRVs~LE~E~ 52 (334)
.++-.|-|+++.-.-+-..-.+..++..|+..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (880)
T PRK03918 153 QILGLDDYENAYKNLGEVIKEIKRRIERLEKFI 185 (880)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666654444444444555554444433
No 19
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.35 E-value=1.2 Score=35.13 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAE--LQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNT 104 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~--Lq~r~~~le~~L~-~rL~~a~~e~~kL~kE~~sLa~T 104 (334)
+||+++..||..|.-=.+++.. ..-+.-..|+.-. .+|..|-+++.+|..|++.|..-
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888887433333322 2222222233222 56777788888888887777655
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.92 E-value=0.91 Score=42.36 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=40.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
++-..+..|+.+...++++.. ...++|++++..++.... ...++|.+|.+|...+.+.+..|..
T Consensus 97 ~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~----~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVIN----GLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888887654 555666776666665554 4455555555555555555554443
No 21
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.71 E-value=3.2 Score=36.78 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=41.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
....++..|+.|...+...+.+...++..+++....+...+. .++....+...++.+|-..|-+-++.+.+.+.+++
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 164 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELR 164 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555444444443333 55555555555555555555544444444444444
Q ss_pred HHHHHH
Q 019884 117 VFRKTL 122 (334)
Q Consensus 117 ~FKk~L 122 (334)
...+.+
T Consensus 165 ~~~~~~ 170 (191)
T PF04156_consen 165 SQLERL 170 (191)
T ss_pred HHHHHH
Confidence 444433
No 22
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.53 E-value=3.2 Score=39.89 Aligned_cols=82 Identities=17% Similarity=0.355 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---------HHHHHHHHHH
Q 019884 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQA---------DKERLSKENE 99 (334)
Q Consensus 32 lArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~---------e~~kL~kE~~ 99 (334)
|+.+|++ +--=+.++++|..+++..+.+++-.+.+|+.+|..++..++ .|+..+.. +...|..|-+
T Consensus 22 l~~~~~~--~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~ 99 (239)
T COG1579 22 LEPRIKE--IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQ 99 (239)
T ss_pred HHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4455552 22336678889999999999999999999999999998888 44444332 2244555555
Q ss_pred HHHHHHHHHhhhHHHH
Q 019884 100 ALTNTVRKLQRDVSKL 115 (334)
Q Consensus 100 sLa~TvKKL~RDvaKL 115 (334)
.+-.....|+.+++.|
T Consensus 100 ~ak~r~~~le~el~~l 115 (239)
T COG1579 100 IAKERINSLEDELAEL 115 (239)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555544443
No 23
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=92.37 E-value=1.4 Score=45.57 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019884 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (334)
...+..++...|.+|+ ...+|+.+|.+|+-.+..|+|.|.+|+-.+|+.+=.+.+-+.+-.
T Consensus 43 ~~ai~a~~~~~E~~l~----~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~ 103 (459)
T KOG0288|consen 43 SRAIKAKLQEKELELN----RLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELR 103 (459)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443 444566666666666677777777777777777666665555433
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=92.33 E-value=3.6 Score=44.47 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=9.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Q 019884 102 TNTVRKLQRDVSKLEVFRKTLVQ 124 (334)
Q Consensus 102 a~TvKKL~RDvaKLE~FKk~Lmq 124 (334)
...++.++..+.+|+.....|.+
T Consensus 278 ~~~i~~~~~~~~~le~e~~~l~~ 300 (880)
T PRK02224 278 AEEVRDLRERLEELEEERDDLLA 300 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444433334443
No 25
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.23 E-value=2.6 Score=44.66 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=34.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 019884 38 SIAISTRVSDLESEHSALRSQLAE--KDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~laE--Kd~~i~~Lq~r~~~le~~L~ 81 (334)
-.++..++..||.|+..|.++|.. .+..+..|++++..++..+.
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~ 438 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELF 438 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 467778889999999999999974 34677888888877777665
No 26
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.19 E-value=2.2 Score=41.89 Aligned_cols=77 Identities=19% Similarity=0.334 Sum_probs=45.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~----------~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
++-..+..||.|...|.+.|.+=+..-++|.+.+..++.++. .....-.-+...+.+|+++|-+.+.-+.
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~ 126 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYAS 126 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777666666666666666665554 1111112223455567777777777766
Q ss_pred hhHHHHH
Q 019884 110 RDVSKLE 116 (334)
Q Consensus 110 RDvaKLE 116 (334)
..+.||+
T Consensus 127 ~~L~~L~ 133 (314)
T PF04111_consen 127 NQLDRLR 133 (314)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 6666663
No 27
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=92.15 E-value=1.1 Score=50.22 Aligned_cols=84 Identities=19% Similarity=0.336 Sum_probs=61.0
Q ss_pred CCCCcc-CCCCCCCCCCCCC--ccc---hHHHHHHHHhcCC--HHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCCh
Q 019884 248 HSSHSS-ISSSESGSQTGKT--RVD---GKEFFRQVRNRLS--YEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENK 319 (334)
Q Consensus 248 ~ss~~s-~Spp~~~s~~gr~--rVD---GKEFFRQARsRLS--YEQFsaFLANIKELNAhkQTREETL~KA~eIFG~~Nk 319 (334)
||.++. .|+|+.-+...++ +|| .--|.-.+|.|+. .|+|-.||.-.+-.---...-.|....+.++|. +++
T Consensus 244 ps~~Q~e~s~~~~~~sd~~~~~~~d~nqAI~~vnkVK~r~~~~pe~y~~fl~~Lrtyq~~qr~i~ev~~~Vt~lfa-~~P 322 (1163)
T COG5602 244 PSDSQPEPSAPSHMPSDARGKHQVDFNQAIIFVNKVKVRFQNNPEMYYDFLDSLRTYQMKQRSIQEVYARVTKLFA-EAP 322 (1163)
T ss_pred ccccCCCCCCcccCCcccccccceehhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHh-hCh
Confidence 344444 4444444433443 443 1457777899987 599999999998876666677889999999997 589
Q ss_pred hHHHHHHHhhccc
Q 019884 320 DLYTIFEGLITRN 332 (334)
Q Consensus 320 dLY~~FegLL~R~ 332 (334)
|||++|..+|--|
T Consensus 323 dLleeFk~FLPd~ 335 (1163)
T COG5602 323 DLLEEFKEFLPDS 335 (1163)
T ss_pred HHHHHHHHhCccc
Confidence 9999999998544
No 28
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.88 E-value=4.2 Score=47.04 Aligned_cols=111 Identities=20% Similarity=0.256 Sum_probs=73.7
Q ss_pred ChHHHHh-cCCCChhhhHHHHHHHHHHH---------------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 14 LPEEVLQ-VLPSDPFEQLDVARKITSIA---------------ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (334)
Q Consensus 14 Lp~eila-vLPsDPyEQLdlArkIts~A---------------~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 77 (334)
|-+|||. +||.+|.+=.+|+-+|-... =..|+..|++|+.+-|....+-.....+.++-++..|
T Consensus 1497 vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad 1576 (1758)
T KOG0994|consen 1497 VAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEAD 1576 (1758)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4456665 69999998888887775432 2478999999999999887766666677777777777
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHh
Q 019884 78 SSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL----EVFRKTLVQ 124 (334)
Q Consensus 78 ~~L~----------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL----E~FKk~Lmq 124 (334)
.++. .-+..+.+...|..+|-..--.++...+..|++| |.+|...||
T Consensus 1577 ~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1577 VAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6665 3445556666666666555444444444444444 445555554
No 29
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=0.56 Score=45.81 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 78 (334)
+..|+.||++|+..|++||.+|-+-..+|+.|-.
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 4689999999999999999999999999998765
No 30
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.72 E-value=2.8 Score=42.61 Aligned_cols=98 Identities=11% Similarity=0.239 Sum_probs=61.9
Q ss_pred HHhcCCCChhhhHHHHHHHHHH--------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 18 VLQVLPSDPFEQLDVARKITSI--------AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQA 89 (334)
Q Consensus 18 ilavLPsDPyEQLdlArkIts~--------A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~ 89 (334)
+...++..|.+-..+-.+|... ....++..++.++..|+.++.+....+..++..+..++..+...+....+
T Consensus 141 f~~f~~~~~~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~ 220 (562)
T PHA02562 141 YVPFMQLSAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQN 220 (562)
T ss_pred hhhHhcCChHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444555566655555555533 34666677788888888888888888888877777777765544455555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 90 DKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
+..+|.++...|...+.+|..++..|
T Consensus 221 e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 221 KYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555444
No 31
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.70 E-value=1.6 Score=43.46 Aligned_cols=72 Identities=21% Similarity=0.415 Sum_probs=54.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH----------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAE----------------KDSRI---AELQSQIESIYSSLSDKLGQAQADKERLSKENEA 100 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laE----------------Kd~~i---~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~s 100 (334)
.+..|+..++.++.-||.+++. |...| +.+++++.+||..|+ ..+||++.|..|||.
T Consensus 90 ~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~q----s~lDEkeEl~~ERD~ 165 (319)
T PF09789_consen 90 ELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQ----SLLDEKEELVTERDA 165 (319)
T ss_pred HHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4555555566666666665543 44444 445678888888888 999999999999999
Q ss_pred HHHHHHHHhhhHHHH
Q 019884 101 LTNTVRKLQRDVSKL 115 (334)
Q Consensus 101 La~TvKKL~RDvaKL 115 (334)
...-|-+||..+..+
T Consensus 166 yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 166 YKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988664
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.55 E-value=2.1 Score=43.45 Aligned_cols=10 Identities=20% Similarity=0.321 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 019884 287 AIFLANVKEL 296 (334)
Q Consensus 287 saFLANIKEL 296 (334)
..|+.-|+++
T Consensus 516 ~~~~~~l~~~ 525 (562)
T PHA02562 516 KALLSILDSL 525 (562)
T ss_pred HHHHHHHHhC
Confidence 3444444444
No 33
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.37 E-value=4.5 Score=40.39 Aligned_cols=86 Identities=31% Similarity=0.457 Sum_probs=53.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHh
Q 019884 39 IAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT--------VRKLQ 109 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~la-EKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~T--------vKKL~ 109 (334)
+.+..|+.+|-.|-..|=..|. |...++.-|+.++..|+.... .-..+..+|.+|+--|-|| |.+|.
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~----~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~ 184 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKS----AKQEELERLRREKVDLENTLEQEQEALVNRLW 184 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554 445555666666666654332 1222334566666666555 67899
Q ss_pred hhHHHHHHHHHHHHhhccc
Q 019884 110 RDVSKLEVFRKTLVQSLKD 128 (334)
Q Consensus 110 RDvaKLE~FKk~LmqSLqe 128 (334)
..++||++=||.|=..|..
T Consensus 185 Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 9999999999998887754
No 34
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=91.30 E-value=5.8 Score=40.84 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=49.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--
Q 019884 42 STRVSDLESEHSALRSQLAEKD----SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL-- 115 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd----~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL-- 115 (334)
.+||+++|.|+..=|..-..-+ .+|.++...++.|- ++|..-+..+.-|..|+.+|-.+||.|.-|...|
T Consensus 219 ksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LR----Ael~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 219 KSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLR----AELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred ccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 4788899988877666433222 23333332222222 5555666677778899999999999999988776
Q ss_pred -HHHHH
Q 019884 116 -EVFRK 120 (334)
Q Consensus 116 -E~FKk 120 (334)
|.+|+
T Consensus 295 NeqLk~ 300 (561)
T KOG1103|consen 295 NEQLKG 300 (561)
T ss_pred cccccC
Confidence 55665
No 35
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=91.26 E-value=7.5 Score=39.05 Aligned_cols=99 Identities=19% Similarity=0.301 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHH------------
Q 019884 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DK--LGQAQAD------------ 90 (334)
Q Consensus 28 EQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~r--L~~a~~e------------ 90 (334)
..|.-...-|..|+..||...+.--..|--++.+-...|++++.-+..|+.++. .- +.+..=+
T Consensus 236 ~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcr 315 (384)
T PF03148_consen 236 NDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCR 315 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHH
Confidence 344455667889999999887777777777777777777777777777777777 22 2222211
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019884 91 ---KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (334)
Q Consensus 91 ---~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 126 (334)
+..|.+|-..|..++.+|+.-+...+.--+.|....
T Consensus 316 D~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~ 354 (384)
T PF03148_consen 316 DPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTR 354 (384)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999998888887653
No 36
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.19 E-value=1.1 Score=51.51 Aligned_cols=77 Identities=25% Similarity=0.364 Sum_probs=52.6
Q ss_pred HHHHhhhhhHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQL-----------------AEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~l-----------------aEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~ 99 (334)
||.+++..+|..+..+|..| ++-.+.|.++++++.++|..|. .-|..+.-|.+-|++|.+
T Consensus 1198 ay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~ 1277 (1758)
T KOG0994|consen 1198 AYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFN 1277 (1758)
T ss_pred hhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHH
Confidence 78888888888777777666 2222333344444444444444 334455567788999999
Q ss_pred HHHHHHHHHhhhHHHHH
Q 019884 100 ALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 100 sLa~TvKKL~RDvaKLE 116 (334)
.|-.|+|.|.-.+.||.
T Consensus 1278 ~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1278 GLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999888864
No 37
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=91.17 E-value=3.6 Score=38.53 Aligned_cols=75 Identities=27% Similarity=0.403 Sum_probs=56.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
.|--+||++-.-+...+++-+.....||.-+.-...+=+ ++-..+.+|-..|..|+..+-..+.+|+|.|.-|+.
T Consensus 105 irR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 105 IRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777777766666666666666655443333222 788889999999999999999999999999998874
No 38
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=91.12 E-value=9.6 Score=35.47 Aligned_cols=89 Identities=17% Similarity=0.211 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 29 QLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 29 QLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
=|+|.-+-..+||......||+....|...|++..+.|.++..+=-..+.+...+|......-..|...|-.+-..+.+|
T Consensus 122 NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~L 201 (221)
T PF05700_consen 122 NLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEEL 201 (221)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888899999999999999999999999999999998765444443344667777777777777777777777777
Q ss_pred hhhHHHHHH
Q 019884 109 QRDVSKLEV 117 (334)
Q Consensus 109 ~RDvaKLE~ 117 (334)
..+|..|+.
T Consensus 202 e~ei~~l~~ 210 (221)
T PF05700_consen 202 EQEIEQLKR 210 (221)
T ss_pred HHHHHHHHH
Confidence 766666643
No 39
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.76 E-value=1.8 Score=40.52 Aligned_cols=77 Identities=13% Similarity=0.203 Sum_probs=58.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FK 119 (334)
+.+++...||+++.+++++.+...+-|+-.. .-.. ..+++++.|.++.++|....+-|.-+|+|++-=+
T Consensus 78 ~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K-------~~~e----~tEer~~el~kklnslkk~~e~lr~el~k~~e~d 146 (203)
T KOG3433|consen 78 DRKSVLQELESQLATGSQKKATLGESIENRK-------AGRE----ETEERTDELTKKLNSLKKILESLRWELAKIQETD 146 (203)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH-------hhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6788999999999999999888777555433 2221 5667778999999999999999999999987544
Q ss_pred HHHHhhcc
Q 019884 120 KTLVQSLK 127 (334)
Q Consensus 120 k~LmqSLq 127 (334)
-++..-+.
T Consensus 147 pqv~~k~~ 154 (203)
T KOG3433|consen 147 PQVFEKKV 154 (203)
T ss_pred HHHHHHHH
Confidence 44443333
No 40
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.51 E-value=10 Score=33.70 Aligned_cols=64 Identities=20% Similarity=0.372 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
...|..++.||...+..|+.++..-=..|. .+|.....+...+..+-...-..+.++..++.++
T Consensus 51 n~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~ 117 (177)
T PF13870_consen 51 NQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333 3444444444444444444444444444444333
No 41
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=90.46 E-value=4 Score=34.82 Aligned_cols=68 Identities=25% Similarity=0.323 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (334)
+|=.|-.+||++..---..+-+=|.+...|...|. ..|+..++|+.-|.=-|+.|..-|--|+-++..
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888777444444455667777777776 455566666666666666666666666666553
No 42
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=90.43 E-value=4.1 Score=44.42 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=7.8
Q ss_pred HHHHHhhhhhcCC
Q 019884 304 EETLRKTDEVFGP 316 (334)
Q Consensus 304 EETL~KA~eIFG~ 316 (334)
..++..|+.++|-
T Consensus 1137 ~~~~~~~d~~~~~ 1149 (1164)
T TIGR02169 1137 SPMIEYADRAIGV 1149 (1164)
T ss_pred HHHHHhcceeEeE
Confidence 3466666766663
No 43
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=90.34 E-value=8.4 Score=31.62 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=57.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK-------LEV 117 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK-------LE~ 117 (334)
+-++|.+...++..+..|-..+..|++++..|+.... .+.++.-.+-+-+++|.+-+|+|+.-+.| |.-
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~----kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKA----KADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4578899999999999999999999999999998887 66666666666666666666666655554 544
Q ss_pred HHHHHHhhcc
Q 019884 118 FRKTLVQSLK 127 (334)
Q Consensus 118 FKk~LmqSLq 127 (334)
.=+.+++.|.
T Consensus 81 ~E~~~~~~l~ 90 (96)
T PF08647_consen 81 TEKEFVRKLK 90 (96)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 44
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.25 E-value=2.9 Score=43.16 Aligned_cols=38 Identities=21% Similarity=0.445 Sum_probs=19.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
-|......|+..+..++.+....-..|++.+.++|..+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i 75 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEI 75 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555444444443
No 45
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=90.20 E-value=1.4 Score=35.87 Aligned_cols=40 Identities=28% Similarity=0.454 Sum_probs=32.8
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 71 SQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 71 ~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
.++-.|...|. +|.....+|+.||..||.-|..-|..|..
T Consensus 23 ~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 23 QEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555 89999999999999999999999998865
No 46
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.03 E-value=15 Score=33.90 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=54.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
......|..+..|..+|+.-|..-...+.+|+.++...+..-. +|+....++...|.-|...|-.-+.+|.++-
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777777777777777777777777776665433 6777777777777777777777777776665
Q ss_pred HHHH
Q 019884 113 SKLE 116 (334)
Q Consensus 113 aKLE 116 (334)
.-|.
T Consensus 124 deL~ 127 (201)
T PF13851_consen 124 DELY 127 (201)
T ss_pred HHHH
Confidence 5543
No 47
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=89.86 E-value=0.55 Score=44.03 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=32.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~ 74 (334)
-+.+-+.++|.||..||+-|+-|++|.+||..|+-
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLG 82 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLG 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999998864
No 48
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.82 E-value=6.2 Score=38.62 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=5.1
Q ss_pred hhhhHHHHHHHHH
Q 019884 45 VSDLESEHSALRS 57 (334)
Q Consensus 45 Vs~LE~E~~~LR~ 57 (334)
-..|+.|+..||+
T Consensus 186 ~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 186 KAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444333333
No 49
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.75 E-value=6.6 Score=34.00 Aligned_cols=71 Identities=25% Similarity=0.408 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019884 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL---TNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (334)
Q Consensus 54 ~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sL---a~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (334)
+|-..|.-++-.+..|+.+++.|+.+=. .+.+|..+|.++++.+ ...+.+|..++.-|+.==-++++=|.+
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~----~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERD----ELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444455555566666665555443 5555666666666433 344555556665555544445544444
No 50
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=89.52 E-value=7 Score=34.39 Aligned_cols=71 Identities=23% Similarity=0.368 Sum_probs=40.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAE----------LQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR 106 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~----------Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvK 106 (334)
++-.|++.||.++..+..+|.+-...+.+ |+.||..||..|- .+|..+.+........-+-+-..|+
T Consensus 39 sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 39 SLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVK 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46778888888888888777654444433 5555555555554 4444444444444444444444444
Q ss_pred HHhh
Q 019884 107 KLQR 110 (334)
Q Consensus 107 KL~R 110 (334)
.|.-
T Consensus 119 ~le~ 122 (143)
T PF12718_consen 119 ALEQ 122 (143)
T ss_pred HHHh
Confidence 4433
No 51
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.50 E-value=4.8 Score=38.32 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cccccCC
Q 019884 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS-LKDDEDA 132 (334)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqS-LqeD~~~ 132 (334)
.++..|++..-..+.+|..++.+|..+=-.+..+ |.-+...
T Consensus 70 kqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp 111 (230)
T PF10146_consen 70 KQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLP 111 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3445666667777777777887777777777777 6666543
No 52
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=89.23 E-value=6 Score=36.26 Aligned_cols=63 Identities=22% Similarity=0.427 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (334)
.++..+.+|..++.+....|.+|+++++.+...- ...++-..|.++...|...+++|...+++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r-----~~~~eR~~~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR-----EESEEREELLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666665553221 12233344444444454444544444443
No 53
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.20 E-value=4.7 Score=43.15 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HHhhhHHHHHHHHHHHHhhcccccC
Q 019884 86 QAQADKERLSKENEALTNTVR-----------------KLQRDVSKLEVFRKTLVQSLKDDED 131 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvK-----------------KL~RDvaKLE~FKk~LmqSLqeD~~ 131 (334)
.-++|+++|+++++.|-+.|. +|.|+|.|++.=+-.|++.+-+-+.
T Consensus 305 ~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 305 EKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445566677777777766653 4666666666666666776666555
No 54
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=89.13 E-value=5.6 Score=43.43 Aligned_cols=11 Identities=0% Similarity=-0.136 Sum_probs=5.2
Q ss_pred hhcCCCChhHH
Q 019884 312 EVFGPENKDLY 322 (334)
Q Consensus 312 eIFG~~NkdLY 322 (334)
=||=..+..++
T Consensus 1130 ~i~~t~~~~~~ 1140 (1164)
T TIGR02169 1130 FIVVSLRSPMI 1140 (1164)
T ss_pred EEEEECcHHHH
Confidence 34555554444
No 55
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.03 E-value=3.4 Score=38.24 Aligned_cols=61 Identities=30% Similarity=0.431 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVR 106 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-------~rL~~a~~e~~kL~kE~~sLa~TvK 106 (334)
..|..++..+..+|.+++..|..|+.++.-....++ .|...+..+...|..|...|-+.+|
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777788888888888888887777666665 4444444444555555444444444
No 56
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=89.00 E-value=3.7 Score=39.41 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~ 79 (334)
..|+.++..|.+++.|-..+|+.|+.-+..++..
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999998854
No 57
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.69 E-value=3.3 Score=32.58 Aligned_cols=55 Identities=24% Similarity=0.415 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHH
Q 019884 63 DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL----EVFRKT 121 (334)
Q Consensus 63 d~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL----E~FKk~ 121 (334)
+..|..||.++..+++.+. ....++..|..||+..+..+-....+..|| |++|+.
T Consensus 4 ea~~~~Lr~rLd~~~rk~~----~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNS----VHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999987666 888999999999999998888877777665 555555
No 58
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.61 E-value=2.1 Score=46.53 Aligned_cols=55 Identities=33% Similarity=0.460 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYS---SLSDKLGQAQADKERLSKENEAL 101 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~---~L~~rL~~a~~e~~kL~kE~~sL 101 (334)
+||+|+.+||..|.-......||+.+++.|+. .+..=|.+...||+.|+.....|
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999776655 33344455566666555543333
No 59
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.57 E-value=10 Score=33.54 Aligned_cols=69 Identities=22% Similarity=0.437 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
++.|+..+.+++.+-.+.+.++++++..++..+. .-.....++......+-+++...++.+..++..|.
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443 11112223334444444555555555555555554
No 60
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=88.31 E-value=4.3 Score=42.59 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=26.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
|..+|..|+.|+..|..+=..=..+...|++|-..++..++
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44566666666666665544444556677777777777776
No 61
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=88.12 E-value=8.1 Score=35.69 Aligned_cols=70 Identities=24% Similarity=0.340 Sum_probs=43.2
Q ss_pred HhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEK-------DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEK-------d~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
.+=.++-.+..+|-.++.++ +.+|.+|+.++..|+.+.+ .....++...+|...|..-+.+|+.++...
T Consensus 103 ~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~----~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 103 DDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAA----KLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566666666666 7777777777777776655 333344444466666766677777766665
Q ss_pred H
Q 019884 116 E 116 (334)
Q Consensus 116 E 116 (334)
|
T Consensus 179 e 179 (190)
T PF05266_consen 179 E 179 (190)
T ss_pred H
Confidence 5
No 62
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.05 E-value=4.9 Score=43.80 Aligned_cols=41 Identities=32% Similarity=0.463 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (334)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 76 (334)
-..-+...|+..||.|+.+||..|..|++.+..|++.+.+|
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557889999999999999999999999999999887433
No 63
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.04 E-value=20 Score=33.14 Aligned_cols=42 Identities=29% Similarity=0.452 Sum_probs=26.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
....|+..|..++..+|..+.++.+.+.++++.+......|.
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666655555443
No 64
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=88.03 E-value=19 Score=37.46 Aligned_cols=99 Identities=24% Similarity=0.318 Sum_probs=80.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH---------
Q 019884 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----DKLGQAQADK--------- 91 (334)
Q Consensus 26 PyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-----~rL~~a~~e~--------- 91 (334)
.-.||--=+-.+..|+..|+...+.=-.+|--+|+.+.++|++.+..|..++.+|. -|+.+..-|+
T Consensus 261 tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvEL 340 (421)
T KOG2685|consen 261 TANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVEL 340 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHH
Confidence 34455555666788999999999999999999999999999999999999999998 4555554443
Q ss_pred ------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019884 92 ------ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (334)
Q Consensus 92 ------~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (334)
-.|..|--.|-.||..|.-.|++=|.=++.|..
T Consensus 341 CrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~ 379 (421)
T KOG2685|consen 341 CRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVN 379 (421)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888877766666654
No 65
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=87.72 E-value=5.9 Score=47.77 Aligned_cols=92 Identities=24% Similarity=0.336 Sum_probs=79.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------DKLGQAQADKERLSKENEALTNTVR 106 (334)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-----------~rL~~a~~e~~kL~kE~~sLa~TvK 106 (334)
..+++..+.+|+.|+..||.++.|=....++|+.+++.+-..++ .++....+.+.+|++.-..+...+.
T Consensus 1317 k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e 1396 (1930)
T KOG0161|consen 1317 KSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIE 1396 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45788899999999999999999999999999999999888877 3356677777888888888899999
Q ss_pred HHhhhHHHHHHHHHHHHhhcccc
Q 019884 107 KLQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 107 KL~RDvaKLE~FKk~LmqSLqeD 129 (334)
-++.-.++||.-|..|+|-|.+=
T Consensus 1397 ~~~~~~~~Lek~k~~l~~el~d~ 1419 (1930)
T KOG0161|consen 1397 AANAKNASLEKAKNRLQQELEDL 1419 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999998877553
No 66
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=87.60 E-value=5.3 Score=35.09 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019884 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENE-----ALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 62 Kd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~-----sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (334)
|+....+|++++..+|.+|+ +..-+..++.+|.. .+.+--...+...++++..|+.|.+-|+.=
T Consensus 18 K~~l~~~l~~~i~~~d~el~----QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv 86 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQ----QLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQV 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999998 77777778877775 666666788888999999999988777654
No 67
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=87.48 E-value=3.4 Score=41.15 Aligned_cols=84 Identities=20% Similarity=0.259 Sum_probs=66.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV----SKL 115 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv----aKL 115 (334)
..++|+.+||.-|.+= -.|+...++.|.+..+.++. |.+|+..-.+.++||+.-|.-|-.-|+|+.-|| .||
T Consensus 2 ~~k~~~~~~~~~i~k~---nee~~~~~~~~~k~~e~~qk-l~sr~~~~~ekke~i~r~n~k~~d~v~~~~~~~~~~~erl 77 (359)
T KOG4398|consen 2 SCKMRIEQLKQTICKG---NEEMEKNSEGLLKTKEKNQK-LYSRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERL 77 (359)
T ss_pred chhHHHHHHHHHHhcC---cHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH
Confidence 4567777777666543 45677778888877766654 447999999999999999999999999998775 799
Q ss_pred HHHHHHHHhhcc
Q 019884 116 EVFRKTLVQSLK 127 (334)
Q Consensus 116 E~FKk~LmqSLq 127 (334)
+.++++-++-|-
T Consensus 78 ~~lr~shi~el~ 89 (359)
T KOG4398|consen 78 ANLRRSHILELT 89 (359)
T ss_pred HHHHHHHHHHHH
Confidence 999999887663
No 68
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.36 E-value=9.2 Score=37.81 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 019884 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEAL 101 (334)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sL 101 (334)
|..+||.+|++-+..|...+.++++++.+|+ +++....+++..+..+-+.+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554 33344444444444433333
No 69
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.36 E-value=13 Score=36.37 Aligned_cols=89 Identities=18% Similarity=0.320 Sum_probs=52.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH-------HHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------------DKLGQAQ-------ADKERLSKENE 99 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~--------------~rL~~a~-------~e~~kL~kE~~ 99 (334)
+-.++..|+.+...|...+..=+....+|.++.+.|+..+. ..|..+. .+.+.+.++-+
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777776666667777777776666654 2222222 22233333444
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019884 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 100 sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (334)
.|-..+..|.-++.+++.=|..+..-|++=
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666777777776666653
No 70
>PRK09039 hypothetical protein; Validated
Probab=87.30 E-value=11 Score=37.54 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=5.1
Q ss_pred HHHHHHHHHhhc
Q 019884 115 LEVFRKTLVQSL 126 (334)
Q Consensus 115 LE~FKk~LmqSL 126 (334)
++.+++.|-.-|
T Consensus 174 i~~L~~~L~~a~ 185 (343)
T PRK09039 174 IADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 71
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=87.24 E-value=10 Score=35.43 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHH------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 28 EQLDVARKITSIA------ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 28 EQLdlArkIts~A------~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
.||.-|..|..-| +..|+.-+|.++.+.-.++..-...|.+|++.+..+...|.
T Consensus 99 ~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 99 QQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 3555555555544 35566666666666666666556666666666555555443
No 72
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.10 E-value=6.3 Score=39.08 Aligned_cols=91 Identities=21% Similarity=0.305 Sum_probs=56.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHH-------------
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQA-DKERLSKENEALT------------- 102 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~-e~~kL~kE~~sLa------------- 102 (334)
.+.+++..||.+...|+....++.-.+..|+.+++.++..|. .++....+ +...+....+.|.
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 337 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLEL 337 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999998888888888888888888888876 22222111 1111222222222
Q ss_pred ----HHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019884 103 ----NTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (334)
Q Consensus 103 ----~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (334)
.....|.||+.--+..=..|++.+++-.
T Consensus 338 ~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 338 NRQRDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345566666666666666666665543
No 73
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.10 E-value=12 Score=37.12 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=35.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDS----RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~----~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
+..|...|+.|+..||+.-.|-+. ....|++++..++..+ +...++-..+..++..|.-+|..++
T Consensus 177 l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei-----------~~~~~~l~e~~~~l~~l~~~I~~~~ 245 (312)
T smart00787 177 LRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEI-----------MIKVKKLEELEEELQELESKIEDLT 245 (312)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555544322 4444444444444443 3333444444444444444444444
Q ss_pred HHHHHHHhhcccc
Q 019884 117 VFRKTLVQSLKDD 129 (334)
Q Consensus 117 ~FKk~LmqSLqeD 129 (334)
.=|-.+...|++-
T Consensus 246 ~~k~e~~~~I~~a 258 (312)
T smart00787 246 NKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 74
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.91 E-value=6.9 Score=40.52 Aligned_cols=67 Identities=15% Similarity=0.265 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019884 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (334)
Q Consensus 50 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (334)
......+++++++...|.+-+++...|+.+|. ..+.+..++..+....+++++++.++++-++.-+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk----~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~ 104 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLK----SLETEIASLEAQLIETADDLKKLRKQIADLNARLN 104 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 34556666677777777777777777766665 66666666666666666666666666665544333
No 75
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.73 E-value=13 Score=36.17 Aligned_cols=86 Identities=22% Similarity=0.368 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHH-------hhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 019884 29 QLDVARKITSIAIST-------RVS---DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLS 95 (334)
Q Consensus 29 QLdlArkIts~A~at-------RVs---~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~ 95 (334)
-++|.||=.-+|+.. ||- .|-.....+|.+|.|-...-.+|.+++..||..+. .||+...-|+.+|.
T Consensus 104 D~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~Le 183 (290)
T COG4026 104 DVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLE 183 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888753 221 22233444556665555556666667777776665 55555555555555
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q 019884 96 KENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 96 kE~~sLa~TvKKL~RDvaK 114 (334)
++.+-|-.-|-+|..-.+.
T Consensus 184 E~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 184 EMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHhchhHHHHHHHHHHH
Confidence 5555544444444444333
No 76
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.72 E-value=12 Score=39.35 Aligned_cols=97 Identities=12% Similarity=0.182 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHH
Q 019884 27 FEQLDVARKITSIAISTRVSDLES-EHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQ 88 (334)
Q Consensus 27 yEQLdlArkIts~A~atRVs~LE~-E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-----------------~rL~~a~ 88 (334)
..||+=-|+--. .+++++|- ++..+|+.+.++-....+|+.....++.+-+ ..|..-.
T Consensus 327 ~sqleSqr~y~e----~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 327 TSQLESQRKYYE----QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred hhhhhHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777776554 67777776 7777777776665555554433333332222 2233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019884 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (334)
|++.+|.++.+....++||++.-..+.-.=|---++-||
T Consensus 403 E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq 441 (493)
T KOG0804|consen 403 EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ 441 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666667777766655444333333333333
No 77
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.62 E-value=7.6 Score=34.25 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=14.9
Q ss_pred HHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIY 77 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~la--EKd~~i~~Lq~r~~~le 77 (334)
+...++.|++|...|+..+. |-...|.+|++.+..++
T Consensus 91 l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 91 LKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE 129 (169)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444332 33333444444444333
No 78
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.59 E-value=9.1 Score=40.66 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=6.4
Q ss_pred CccchHHHHHHHHh
Q 019884 266 TRVDGKEFFRQVRN 279 (334)
Q Consensus 266 ~rVDGKEFFRQARs 279 (334)
+-|+|+ ++...+.
T Consensus 614 ~e~~~~-~~~~l~~ 626 (650)
T TIGR03185 614 EEVDEK-HYNLLKP 626 (650)
T ss_pred HhhCHH-HHHHHHH
Confidence 456663 4444443
No 79
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=86.44 E-value=3.3 Score=34.68 Aligned_cols=39 Identities=23% Similarity=0.444 Sum_probs=15.9
Q ss_pred HHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSAL--RSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 42 atRVs~LE~E~~~L--R~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
..||+.||.++..| ++.+++=.-.|.+++.++..++..+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444444444 4444443334444444444443333
No 80
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.37 E-value=16 Score=32.42 Aligned_cols=53 Identities=17% Similarity=0.325 Sum_probs=44.0
Q ss_pred ChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 25 DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
.=|||| +|-..++..++..=..|+.+||.....--+.+...++++..+...+.
T Consensus 42 iDFeqL----kien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~ 94 (177)
T PF13870_consen 42 IDFEQL----KIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELE 94 (177)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358898 67788899999888899999998888888888888888887777666
No 81
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=86.35 E-value=2 Score=40.83 Aligned_cols=64 Identities=19% Similarity=0.365 Sum_probs=58.3
Q ss_pred CccchHHHHHHHHhcCC--HHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChhHHHHHHHhhc
Q 019884 266 TRVDGKEFFRQVRNRLS--YEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKDLYTIFEGLIT 330 (334)
Q Consensus 266 ~rVDGKEFFRQARsRLS--YEQFsaFLANIKELNAhkQTREETL~KA~eIFG~~NkdLY~~FegLL~ 330 (334)
+--|..-|.+.++.++. .|-|..||.-.|++=||+-.+.+...+..|+|-. +.||...|...|=
T Consensus 18 t~~DAlsYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~-h~~Ll~gfN~fLP 83 (231)
T KOG4204|consen 18 TLDDALAYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKG-HPDLLLGFNTFLP 83 (231)
T ss_pred ChHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHcc-CHHHHHHHHhhCc
Confidence 77899999999999886 5679999999999999999999999999999975 8899999987764
No 82
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=86.32 E-value=4.9 Score=35.88 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=30.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~ 73 (334)
+...+|..++.|...|+.+|.+++..|.+|+...
T Consensus 17 ~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~ 50 (155)
T PF06810_consen 17 APKAKVDKVKEERDNLKTQLKEADKQIKDLKKSA 50 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4788999999999999999999999999999843
No 83
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=86.29 E-value=14 Score=28.86 Aligned_cols=80 Identities=23% Similarity=0.374 Sum_probs=49.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd-----~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
+..++..|+.+...+...+.... ..+...+.-+..|+..+ .....+...+.++-..+-..+....+++.+|
T Consensus 17 ~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i----~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~ 92 (123)
T PF02050_consen 17 AEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAI----QQQQQELERLEQEVEQAREELQEARRERKKL 92 (123)
T ss_dssp HHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665555555 44444444444444433 4677777788888888888888888888888
Q ss_pred HHHHHHHHh
Q 019884 116 EVFRKTLVQ 124 (334)
Q Consensus 116 E~FKk~Lmq 124 (334)
|.++-.-..
T Consensus 93 e~L~e~~~~ 101 (123)
T PF02050_consen 93 EKLKERRRE 101 (123)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887755443
No 84
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.21 E-value=17 Score=34.02 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 30 LDVARKITSIAI--STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 30 LdlArkIts~A~--atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
+++..++...+- -.|+.++..|...|.+.+..-.+.+..|+.....++..+
T Consensus 27 ~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v 79 (251)
T PF11932_consen 27 QQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQV 79 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444332 234555555555555555444444455544444444433
No 85
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=86.17 E-value=17 Score=33.55 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=54.4
Q ss_pred HhhhhhHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 43 TRVSDLESEHSALRSQLA--EKDSR-IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~la--EKd~~-i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
-=+.+++.|+..|+.+|. +||.. ...++.++..++..|. ---....+...+|.+||+.|-......-.||..==
T Consensus 62 epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~ 141 (201)
T PF13851_consen 62 EPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKT 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888887 45543 2334555555555554 22225667778888888888888888888887766
Q ss_pred HHHHHHH
Q 019884 117 VFRKTLV 123 (334)
Q Consensus 117 ~FKk~Lm 123 (334)
.||-.|+
T Consensus 142 ~~kn~lL 148 (201)
T PF13851_consen 142 GLKNLLL 148 (201)
T ss_pred HHHHHHH
Confidence 6666654
No 86
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.10 E-value=29 Score=32.92 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019884 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (334)
Q Consensus 50 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (334)
.|+..+|.++..-...+..|+.+...|+..+. ..+.........|..|...|-..+....++...|-..|-.
T Consensus 216 ~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~ 294 (312)
T PF00038_consen 216 EELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLA 294 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455554444444444444444444443 2222223333444555555555555555555555544443
No 87
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.09 E-value=9.4 Score=36.32 Aligned_cols=78 Identities=22% Similarity=0.383 Sum_probs=51.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKER-------LSKENEALTNTVRKLQR 110 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~k-------L~kE~~sLa~TvKKL~R 110 (334)
|--|+-.+|.|..+.+..|.+..+-|..|.++.-.++.+-. .+-..+.+++.. ..+|+..|..-+..+..
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999999999999999888887777665443 444445555544 45577777777777777
Q ss_pred hHHHHHHH
Q 019884 111 DVSKLEVF 118 (334)
Q Consensus 111 DvaKLE~F 118 (334)
.+++|+.=
T Consensus 90 ~i~~l~ee 97 (246)
T PF00769_consen 90 EIARLEEE 97 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777653
No 88
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.05 E-value=5.9 Score=34.30 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=9.9
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLA 60 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~la 60 (334)
.+.+..+|.|+..|+.+++
T Consensus 22 ~s~lr~~E~E~~~l~~el~ 40 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELA 40 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544
No 89
>PRK02224 chromosome segregation protein; Provisional
Probab=85.99 E-value=13 Score=40.26 Aligned_cols=8 Identities=25% Similarity=0.302 Sum_probs=3.6
Q ss_pred HHHHHHHh
Q 019884 272 EFFRQVRN 279 (334)
Q Consensus 272 EFFRQARs 279 (334)
+|+...+.
T Consensus 468 ~~~~~~~~ 475 (880)
T PRK02224 468 ETIEEDRE 475 (880)
T ss_pred hhHHHHHH
Confidence 45544433
No 90
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.90 E-value=7.9 Score=39.18 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=30.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
.+..++..||.+...|+....++.-.+.+|+.+++.++..+.
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKE 292 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 455677788888888888777777777777777777776653
No 91
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.81 E-value=13 Score=29.55 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
...++|.+|..|+.....-++.|
T Consensus 43 ~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 43 ELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555554444444433
No 92
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=85.60 E-value=11 Score=34.52 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=29.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~ 73 (334)
+..-+.++|.||..|||-|+-|.++.++|+.|+
T Consensus 34 Lr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 34 LRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455678899999999999999999999999985
No 93
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=85.58 E-value=9.9 Score=45.98 Aligned_cols=105 Identities=21% Similarity=0.383 Sum_probs=81.6
Q ss_pred hhHHHHHHHHH-----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 019884 28 EQLDVARKITS-----IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (334)
Q Consensus 28 EQLdlArkIts-----~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~ 99 (334)
|.++++-.|.. -+..+.=.+||.++..|...|+|......-..+|+-.+...+. .-|....+.+.+|-..|.
T Consensus 1696 e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~ 1775 (1930)
T KOG0161|consen 1696 ELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKK 1775 (1930)
T ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44455555544 4566777889999999999999999999999999998888776 778888888999999999
Q ss_pred HHHHHHHHHh---------------hhHHHHHHHHHHHHhhcccccCC
Q 019884 100 ALTNTVRKLQ---------------RDVSKLEVFRKTLVQSLKDDEDA 132 (334)
Q Consensus 100 sLa~TvKKL~---------------RDvaKLE~FKk~LmqSLqeD~~~ 132 (334)
+|..+||-|. ++++|||+=-+.|=.+|..+...
T Consensus 1776 ~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E~~~ 1823 (1930)
T KOG0161|consen 1776 SLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQRR 1823 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 9999998876 45556666666666666655543
No 94
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.54 E-value=3.7 Score=32.50 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019884 69 LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (334)
Q Consensus 69 Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F 118 (334)
|+..+..=|.. +.+..+|.++|.+-.-.+.+|||||.-.+.-+|.=
T Consensus 3 l~~~l~EKDe~----Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~ 48 (74)
T PF12329_consen 3 LEKKLAEKDEQ----IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQ 48 (74)
T ss_pred HHHHHHhHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444444433 44888899999999999999999998888777743
No 95
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=85.47 E-value=28 Score=33.62 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=22.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
.+..++..|+.++..++.++..-...+..+++++..++..+
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666555555555555555555554444433
No 96
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=85.34 E-value=6.4 Score=43.52 Aligned_cols=60 Identities=22% Similarity=0.338 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 019884 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLS 95 (334)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~ 95 (334)
|++--||+.. -+-|+|+..|+++|.+--..-..+++||+.||.+|- -.|+.+.+|+++..
T Consensus 10 kvaeeav~gw-ekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i 72 (769)
T PF05911_consen 10 KVAEEAVSGW-EKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKI 72 (769)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 5566666654 466899999999999888888899999999999998 67777777775443
No 97
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=85.31 E-value=9.4 Score=42.27 Aligned_cols=73 Identities=26% Similarity=0.433 Sum_probs=43.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH--HHHHHH------------HHHHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIE-------------SIYSSLS--DKLGQA------------QADKERLSK 96 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~-------------~le~~L~--~rL~~a------------~~e~~kL~k 96 (334)
+|+.|-..+..|...|.+||+.+.++.+|+. .||.++. .|+... .++...+.+
T Consensus 393 ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~ 472 (775)
T PF10174_consen 393 KINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQK 472 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666666666666666665 3444444 333222 345566677
Q ss_pred HHHHHHHHHHHHhhhHHHHH
Q 019884 97 ENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 97 E~~sLa~TvKKL~RDvaKLE 116 (334)
|+..|-.+|..|+.+|+-.+
T Consensus 473 e~~~lk~~~~~LQ~eLsEk~ 492 (775)
T PF10174_consen 473 ELKELKAKLESLQKELSEKE 492 (775)
T ss_pred HHHHHHHHHHHHhhhhHHHH
Confidence 77777777777777766544
No 98
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.31 E-value=23 Score=38.34 Aligned_cols=19 Identities=42% Similarity=0.599 Sum_probs=11.7
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLA 60 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~la 60 (334)
..||..||..+..|+.+++
T Consensus 49 ~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 49 ISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4566666666666666555
No 99
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.20 E-value=20 Score=38.40 Aligned_cols=39 Identities=18% Similarity=0.377 Sum_probs=20.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 78 (334)
.+...+..|+.++.+|...|.........|+.++..+..
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~ 199 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTE 199 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555566655555555555555544444433
No 100
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=85.19 E-value=7.4 Score=30.97 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
..+..+.++++.|..-.+.|...|..|+..|.+|.
T Consensus 35 ~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 35 HMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45558889999999999999999999999999884
No 101
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=84.74 E-value=21 Score=29.53 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019884 67 AELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (334)
Q Consensus 67 ~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 126 (334)
..|++.+...+.-|. ++...|.....+=.+.+......+++|..++..|...+..+..-|
T Consensus 42 ~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 42 QELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555 666666666666666666666666666666666666655554444
No 102
>PRK10698 phage shock protein PspA; Provisional
Probab=84.51 E-value=17 Score=34.10 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 88 QADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
.+....|..+.+....+|.+|..++.+|+
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~ 126 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELE 126 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666665554
No 103
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.38 E-value=14 Score=39.60 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
..||.|+..|+.++.+-...+...+++...|.....
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK 195 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 104
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=84.22 E-value=4.9 Score=39.53 Aligned_cols=84 Identities=27% Similarity=0.389 Sum_probs=54.4
Q ss_pred ChHHHHhc---CCCChhhhHHHHHHHHHHH-----------------------HHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 019884 14 LPEEVLQV---LPSDPFEQLDVARKITSIA-----------------------ISTRVSDLESEHSALRSQLAEKDSRIA 67 (334)
Q Consensus 14 Lp~eilav---LPsDPyEQLdlArkIts~A-----------------------~atRVs~LE~E~~~LR~~laEKd~~i~ 67 (334)
+|+.++.. +=.||.-+-+.++++ |.| .-.++..+|.+....+.+|.++...+.
T Consensus 167 i~~~~~~~l~~~~~~p~F~~e~v~~~-S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~ 245 (344)
T PF12777_consen 167 IPEATIKKLKKYLKNPDFNPEKVRKA-SKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELA 245 (344)
T ss_dssp --HHHHHHHHCTTTSTTSSHHHHHHH--TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhcCCCCCHHHHHHH-hhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554422 235777777777776 444 224667777788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (334)
Q Consensus 68 ~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa 102 (334)
+|++++..|+..+. .+..++.+|..+-+...
T Consensus 246 ~l~~~l~~l~~~~~----~~~~e~~~l~~~~~~~~ 276 (344)
T PF12777_consen 246 ELEEKLAALQKEYE----EAQKEKQELEEEIEETE 276 (344)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 88888888887776 66666666666544433
No 105
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=83.97 E-value=18 Score=37.98 Aligned_cols=85 Identities=28% Similarity=0.398 Sum_probs=57.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHH-------HHHHH
Q 019884 37 TSIAISTRVSDLESEHSALRSQLAE------------------------KDSRIAELQSQIESIYSSL-------SDKLG 85 (334)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~laE------------------------Kd~~i~~Lq~r~~~le~~L-------~~rL~ 85 (334)
..+-+-.||.+||.|-+-|-.||.+ --.+|.-||..|+.|-..| +.+|.
T Consensus 202 lvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~ 281 (552)
T KOG2129|consen 202 LVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLM 281 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778999999999998887732 1134445555555444444 45666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (334)
+-.+|....-+||..| -+||.+.|.|=|++-|+|-.
T Consensus 282 qy~~Ee~~~reen~rl---QrkL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 282 QYRAEEVDHREENERL---QRKLINELERREALCRMLSE 317 (552)
T ss_pred HHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHhhh
Confidence 6666665555665555 47999999999999998854
No 106
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=83.89 E-value=11 Score=36.85 Aligned_cols=80 Identities=23% Similarity=0.306 Sum_probs=56.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAE-----LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ----RDV 112 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~-----Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~----RDv 112 (334)
..|+.-|--|-.-+|.||-- ++.+. -.+|.+++|.++. ...|||.+|..||++|-..-+.|. .=+
T Consensus 58 r~RL~HLS~EEK~~RrKLKN--RVAAQtaRDrKKaRm~eme~~i~----dL~een~~L~~en~~Lr~~n~~L~~~n~el~ 131 (292)
T KOG4005|consen 58 RRRLDHLSWEEKVQRRKLKN--RVAAQTARDRKKARMEEMEYEIK----DLTEENEILQNENDSLRAINESLLAKNHELD 131 (292)
T ss_pred HHhhcccCHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45667777777777777743 22221 2456777776654 888999999999999988777664 345
Q ss_pred HHHHHHHHHHHhhcc
Q 019884 113 SKLEVFRKTLVQSLK 127 (334)
Q Consensus 113 aKLE~FKk~LmqSLq 127 (334)
..||-++..||.+=+
T Consensus 132 ~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 132 SELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHhhHH
Confidence 678888888887643
No 107
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=83.83 E-value=14 Score=42.16 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhhhhh
Q 019884 283 YEQFAIFLANVKELNAHKQTKEETLRKTDEV 313 (334)
Q Consensus 283 YEQFsaFLANIKELNAhkQTREETL~KA~eI 313 (334)
.|+|.....-..+|+.++++-++.+.+..+.
T Consensus 969 iee~e~~~~r~~~l~~~~~dl~~a~~~l~~~ 999 (1163)
T COG1196 969 IEEYEEVEERYEELKSQREDLEEAKEKLLEV 999 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333333
No 108
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=83.70 E-value=27 Score=36.42 Aligned_cols=41 Identities=32% Similarity=0.448 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHhhhHHH---------HHHHHHHHHhhcccc
Q 019884 89 ADKERLSKENEALTN--------TVRKLQRDVSK---------LEVFRKTLVQSLKDD 129 (334)
Q Consensus 89 ~e~~kL~kE~~sLa~--------TvKKL~RDvaK---------LE~FKk~LmqSLqeD 129 (334)
+-..+|+.|...+++ ..+.|+++..| +|.|+++|-+++.+.
T Consensus 98 ~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~l~~~~~~s 155 (448)
T COG1322 98 ESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQRIHES 155 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444 34456666655 788888887766554
No 109
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.64 E-value=11 Score=43.30 Aligned_cols=71 Identities=4% Similarity=0.231 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019884 45 VSDLESEHSALRSQLAEK--DSRIAELQSQIESIYSSLS--------DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEK--d~~i~~Lq~r~~~le~~L~--------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (334)
+..++.+-..|+..|.-+ .+.+.+++.++..|+.++. .-+....++.+.|..++..|..++|+|.-+|+.
T Consensus 1007 l~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~ 1086 (1311)
T TIGR00606 1007 IDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKH 1086 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334333 4444555555555555444 222333444444554555555555555555554
Q ss_pred H
Q 019884 115 L 115 (334)
Q Consensus 115 L 115 (334)
|
T Consensus 1087 l 1087 (1311)
T TIGR00606 1087 F 1087 (1311)
T ss_pred H
Confidence 3
No 110
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.44 E-value=11 Score=38.76 Aligned_cols=78 Identities=18% Similarity=0.289 Sum_probs=50.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---------------------DKLGQAQADKERLSKEN 98 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---------------------~rL~~a~~e~~kL~kE~ 98 (334)
+...+|..|+.++..|+.++++-+..+..++.++.-|+.--. +-+....++..+|..+.
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577788888888888888777777777777766655321 11222234556666777
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 019884 99 EALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 99 ~sLa~TvKKL~RDvaKLE~ 117 (334)
..|....++|.+.+++|+.
T Consensus 148 ~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 148 REAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777744
No 111
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=83.41 E-value=5 Score=30.81 Aligned_cols=38 Identities=34% Similarity=0.595 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019884 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (334)
|.+|+.++..++..+. .+.+|+..|..+|-++++.|-+
T Consensus 2 i~elEn~~~~~~~~i~-----------tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSIN-----------TVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554433 3344444444444444444433
No 112
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.24 E-value=5.9 Score=37.68 Aligned_cols=61 Identities=26% Similarity=0.405 Sum_probs=33.2
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 51 EHSALRSQLAE---KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 51 E~~~LR~~laE---Kd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
+...|+.++.- ..+.+..+.+....|+.+++ .-..+-+++++.++.|-.++..+++..++|
T Consensus 135 ~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~----~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 135 ENEALKKQLENSSKLEEENDKLKADLEKLETELE----KKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred HHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 45555555442 12333334444444443333 555556666677777777777777776665
No 113
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.20 E-value=12 Score=42.72 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019884 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (334)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (334)
+.+..++....+-.+-|.+.|.|||..-..|-..+++
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNE 426 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777788888888888888855555544443
No 114
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=83.19 E-value=12 Score=40.59 Aligned_cols=99 Identities=23% Similarity=0.284 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHH--------HhhhhhHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 019884 29 QLDVARKITSIAIS--------TRVSDLESEHSALRSQLAEK------D--SRIAELQSQIESIYSSLSDKLGQ-AQADK 91 (334)
Q Consensus 29 QLdlArkIts~A~a--------tRVs~LE~E~~~LR~~laEK------d--~~i~~Lq~r~~~le~~L~~rL~~-a~~e~ 91 (334)
+.+|+-|+.-+-+. +||-.||.|+..||.+++.- + ..|+.+...+.+.|...+ +|.. .....
T Consensus 227 dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~-~L~~di~~~~ 305 (629)
T KOG0963|consen 227 DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIA-QLSNDIERLE 305 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence 45566666554443 68888999999999887631 1 223444444444444433 3322 23334
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019884 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (334)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (334)
.-|++|+...+++|..|.+.+...-.-...|-.-|+.
T Consensus 306 ~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 306 ASLVEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677788888888888887776654444444444433
No 115
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.99 E-value=9 Score=35.18 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHH
Q 019884 95 SKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 95 ~kE~~sLa~TvKKL~RDvaKL 115 (334)
.+.|+.|..-+.||..|+.+|
T Consensus 94 ~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 94 RKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666663
No 116
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=82.92 E-value=8.8 Score=32.98 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 30 LDVARKITSIAISTRV--------SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 30 LdlArkIts~A~atRV--------s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
|||||..=+--+--|. ..|+-|+..||..|+-|+.++..+.+++...+.-|+
T Consensus 14 lD~aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~ 73 (106)
T PF11594_consen 14 LDVARQMEAFFLQKRFELSAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLS 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999888777765 368899999999999999999999999998886554
No 117
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.75 E-value=9.5 Score=40.89 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=22.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcccccCC
Q 019884 102 TNTVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (334)
Q Consensus 102 a~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~ 132 (334)
......|+||+.-.+..=..|++.+++-.-.
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556678888888887778888888776543
No 118
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.73 E-value=8.6 Score=35.25 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=22.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq 70 (334)
+.-.++.+|+.++..++.++++-...|.++.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888888877666666664
No 119
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.63 E-value=21 Score=31.87 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=40.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (334)
+.+....|+.|...||..-.+=+......|+||+.||.... .-|....+++.++ +..+...|-.|+.++.-
T Consensus 64 lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~---~e~~~~~ve~L~~ql~~ 137 (140)
T PF10473_consen 64 LTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQL---KEESKSAVEMLQKQLKE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 34455667777777774433333344445556888887666 4455566664444 34455566666655543
No 120
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=82.37 E-value=22 Score=33.66 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=14.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLA 60 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~la 60 (334)
.|..||-.||.+-..|..++.
T Consensus 15 ~YIekVr~LE~~N~~Le~~i~ 35 (312)
T PF00038_consen 15 SYIEKVRFLEQENKRLESEIE 35 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 366777777777777776665
No 121
>TIGR02559 HrpB7 type III secretion protein HrpB7. This family of genes is found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=82.33 E-value=13 Score=34.01 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=51.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 019884 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENE 99 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~------~rL~~a~~e~~kL~kE~~ 99 (334)
-.+.-+|..+|.++..|++-|..|...|+..+..|..++..+. ++|..+.|-......|-+
T Consensus 82 ~vl~~~~~~aE~~~aaa~~al~~~~~~laa~~r~iaRn~a~id~c~eR~~~l~ra~ea~~edA~dEE 148 (158)
T TIGR02559 82 DVLEAHLGAAEQAEAAARAALQALAAALAAKKREIARLDAQIDVCRERAERLRRAGEAAREEALEEE 148 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 3457789999999999999999999999999999999999988 777777776665555433
No 122
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=82.33 E-value=21 Score=35.42 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019884 52 HSALRSQLAEKDSRIAELQSQ 72 (334)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~r 72 (334)
+..||++|.+-+..+++|..+
T Consensus 256 i~~l~~~l~~le~~l~~l~~~ 276 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQR 276 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443
No 123
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.26 E-value=12 Score=40.96 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=37.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (334)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvK 106 (334)
-.+|..||..|..+...-..+|.+-.+.+..|+++...|. +|+..+.+.+++|.+--+.+.+.+.
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~La----eR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLA----ERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666555555555555555555444443 4555666666666665555544443
No 124
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=82.23 E-value=15 Score=40.66 Aligned_cols=70 Identities=26% Similarity=0.403 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 019884 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALT 102 (334)
Q Consensus 31 dlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa 102 (334)
+|=.||+. +..++..+-+|...|...|.+|++.|.+|.+.-+.+|..+. .||-.+.-||.-|.=|--.|.
T Consensus 89 ~le~~l~e--~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~ 161 (769)
T PF05911_consen 89 ELEAKLAE--LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLS 161 (769)
T ss_pred HHHHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 35577788888899999999999999999999999998776 777777777777666555544
No 125
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.22 E-value=14 Score=39.77 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=4.8
Q ss_pred hHHHHHHHHHH
Q 019884 111 DVSKLEVFRKT 121 (334)
Q Consensus 111 DvaKLE~FKk~ 121 (334)
.|+||+.+-.+
T Consensus 395 ni~kL~~~v~~ 405 (594)
T PF05667_consen 395 NIAKLQALVEA 405 (594)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 126
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=82.09 E-value=23 Score=35.53 Aligned_cols=40 Identities=33% Similarity=0.543 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (334)
+++.+-.++-..+..||..|- +||.+++++-|++=|+|--
T Consensus 254 ~k~~~~~~eek~ireEN~rLq---r~L~~E~erreal~R~lse 293 (310)
T PF09755_consen 254 EKMAQYLQEEKEIREENRRLQ---RKLQREVERREALCRHLSE 293 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 445555566666777777775 5899999999999998854
No 127
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.08 E-value=11 Score=41.19 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=39.2
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 53 SALRSQ-LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 53 ~~LR~~-laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
..||.+ +..-+..-.+|++|+..|..... +-+++..+|.+|++.|..+.++|..-+...+
T Consensus 546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e----~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEIQRRVKLLKQQKE----QQLKELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777 44455667889999998887776 4555555666666666666666665444433
No 128
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=81.86 E-value=28 Score=39.79 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019884 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (334)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (334)
+...|......+...++.+.+++.++..=...+.+
T Consensus 447 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1163)
T COG1196 447 ELEELEEQLEELRDRLKELERELAELQEELQRLEK 481 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666666666666666555444443
No 129
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=81.80 E-value=26 Score=34.90 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------------DKLG----QAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~--------------~rL~----~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
.|-+.+++++..|.+-.+.|.+|+.+|..|..++. ..+. ...+-..+|++=.+.|+..-.+|
T Consensus 71 ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l 150 (301)
T PF06120_consen 71 QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERL 150 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888777788888887777776662 1121 11222334444444577777777
Q ss_pred hhhHHHHHHHHHHH
Q 019884 109 QRDVSKLEVFRKTL 122 (334)
Q Consensus 109 ~RDvaKLE~FKk~L 122 (334)
++.+.|+..--++|
T Consensus 151 ~q~~~k~~~~q~~l 164 (301)
T PF06120_consen 151 EQMQSKASETQATL 164 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776655554
No 130
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.78 E-value=24 Score=40.69 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=36.4
Q ss_pred HHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 30 LDVARKITS-IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 30 LdlArkIts-~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
+.++.+|.. -.|..++..|..++..++..+.+.+..+..|+.++..++..+.
T Consensus 874 lkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1311)
T TIGR00606 874 LQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 344444443 3566677777777788888888888888888888777777774
No 131
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=80.93 E-value=7.2 Score=42.44 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=39.9
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 55 LRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 55 LR~~la----EKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
||.||. ||++++..+.+++..+.......|.....+.++|..||.-|.+-+|.+.
T Consensus 2 LRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s 60 (654)
T PF09798_consen 2 LRDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLS 60 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455543 7888888888888888776666666666677778888887777777664
No 132
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=80.91 E-value=17 Score=36.88 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=53.4
Q ss_pred HhhhhhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHH
Q 019884 43 TRVSDLESEHSALRSQLAEK--------------DSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE---ALT 102 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEK--------------d~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~---sLa 102 (334)
-+|-.|..++..|++++.+- +....+|+.++..++..+. .++....++.+++..+-. .+.
T Consensus 275 P~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 354 (498)
T TIGR03007 275 PDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVE 354 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 35667777777777776542 1223445555555555444 333344444444444433 345
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019884 103 NTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (334)
Q Consensus 103 ~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (334)
.+...|+||+.-.+..=..|++.+++-.
T Consensus 355 ~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 355 AELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999888888888888887644
No 133
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=80.87 E-value=7.9 Score=35.12 Aligned_cols=52 Identities=27% Similarity=0.364 Sum_probs=43.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADK 91 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~------~rL~~a~~e~ 91 (334)
-+.-|+..+|.+...|++.|..|...|+..+..|..++..+. ++|..+.+..
T Consensus 83 ~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~ 140 (158)
T PF09486_consen 83 VLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAA 140 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999999998887 4444444443
No 134
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.80 E-value=27 Score=37.64 Aligned_cols=91 Identities=24% Similarity=0.406 Sum_probs=59.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL---- 115 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL---- 115 (334)
++.++...+|..+..|...+.+|+..|.-||.....|-..+- .=.-.-+|.++...||+.|-.+|-+++-++++|
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie-~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE-LQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888999999999999999999999999998887665 111222333344444444444444444444332
Q ss_pred -------HHHHHHHHhhcccccC
Q 019884 116 -------EVFRKTLVQSLKDDED 131 (334)
Q Consensus 116 -------E~FKk~LmqSLqeD~~ 131 (334)
+.|.+.|-.-+.+-+.
T Consensus 363 w~~~l~~~~~f~~le~~~~~~~~ 385 (581)
T KOG0995|consen 363 WELKLEIEDFFKELEKKFIDLNS 385 (581)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665555544
No 135
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=80.62 E-value=15 Score=44.18 Aligned_cols=44 Identities=30% Similarity=0.480 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQ 88 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~ 88 (334)
..+|.+||++|...|.+|+++|++|..++..+...++.+|....
T Consensus 1309 ~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~ 1352 (1822)
T KOG4674|consen 1309 YEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELN 1352 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999998888855553333333
No 136
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=80.42 E-value=17 Score=29.66 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~ 103 (334)
|=.+-..|+.+|.+|+++|..|..-+.+|..-|+ .-.+-+.+|..+...+..
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLi----KYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLI----KYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 3346688999999999999999988888886665 777777777777766654
No 137
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=80.30 E-value=15 Score=32.18 Aligned_cols=85 Identities=26% Similarity=0.369 Sum_probs=54.6
Q ss_pred HHHhcCCCChhhhHHH---------H--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 17 EVLQVLPSDPFEQLDV---------A--RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG 85 (334)
Q Consensus 17 eilavLPsDPyEQLdl---------A--rkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~ 85 (334)
|++.-|=+.|+-.|-. | -.-..++|..|+...|.++.++-..+.|+....+...+.++.++ .|.
T Consensus 19 ~~leklds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~-----els 93 (131)
T PF10158_consen 19 EVLEKLDSRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVN-----ELS 93 (131)
T ss_pred HHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 5888887777766432 1 11235678888999999999999999888877776666665544 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019884 86 QAQADKERLSKENEALTNTVR 106 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvK 106 (334)
..+.....|.++.-.+..++.
T Consensus 94 ~~L~~~~~lL~~~v~~ie~LN 114 (131)
T PF10158_consen 94 QQLSRCQSLLNQTVPSIETLN 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444443
No 138
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=80.20 E-value=14 Score=34.84 Aligned_cols=68 Identities=28% Similarity=0.402 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 49 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
.+||-.||.+|.|-.........++..|..++. .-|..+..+......|...|-..|-+|..++++|.
T Consensus 30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr 100 (202)
T PF06818_consen 30 DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELR 100 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHH
Confidence 355566666666555555555555555555555 44557777878888888888888888888888774
No 139
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=79.99 E-value=16 Score=42.53 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=36.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
..|+..|+.++..|+.++++.+..+..|+.++..|..++.
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~ 780 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADELA 780 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999988876
No 140
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=79.98 E-value=23 Score=33.31 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
.|+.|+..||.-+..=++....|..+...+|..-+ +++....++|.||.-|.+-|....+-|
T Consensus 64 ~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 34455555555555444555555555555554444 444444444444444444444433333
No 141
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=79.94 E-value=47 Score=30.20 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=54.8
Q ss_pred ChhhhHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 019884 25 DPFEQLDVARKITSIAIS---TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKE 97 (334)
Q Consensus 25 DPyEQLdlArkIts~A~a---tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~----~rL~~a~~e~~kL~kE 97 (334)
||..-|+.+.+=..-+|. .-|...-+....|..++.+-...+.++++++ +.+|. +--+.|+.++..+..+
T Consensus 23 DP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A---~~Al~~g~edLAr~al~~k~~~e~~ 99 (221)
T PF04012_consen 23 DPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA---ELALAAGREDLAREALQRKADLEEQ 99 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 677666665433222221 2222333333444444444444444444443 33344 3335667777777777
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019884 98 NEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 98 ~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (334)
...|..++..+...|.+|+..-+.|-..|.+=
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~ 131 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEEL 131 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766666665555543
No 142
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=79.88 E-value=11 Score=28.40 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019884 61 EKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 61 EKd~~i~~Lq~r~~~le~~L 80 (334)
-|...|.+|+.+|..|+...
T Consensus 23 RKk~~~~~Le~~~~~L~~en 42 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESEN 42 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 35667777777777666444
No 143
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=79.71 E-value=17 Score=38.93 Aligned_cols=33 Identities=12% Similarity=0.310 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
||.+...|+....++.-.+.+|+.++..++.++
T Consensus 300 l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i 332 (754)
T TIGR01005 300 LRATIADLSTTMLANHPRVVAAKSSLADLDAQI 332 (754)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444433
No 144
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=79.70 E-value=10 Score=37.95 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=55.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
.-+..+|..|+..||++|.|=.--|.-|+++++....... .-.+...+|.++|..+-..+-.+.+-|.|||.-+
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~ 152 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSL 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999998776655 1122223667777777777777777777776543
No 145
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=79.69 E-value=61 Score=31.33 Aligned_cols=41 Identities=22% Similarity=0.399 Sum_probs=23.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
+..+...+++++..|+.+++.-...+..++.++..++..+.
T Consensus 135 ~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~ 175 (423)
T TIGR01843 135 FESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLE 175 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666665555556666665555555554
No 146
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=79.62 E-value=12 Score=39.13 Aligned_cols=48 Identities=25% Similarity=0.287 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHhhccccc
Q 019884 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKL-----EVFRKTLVQSLKDDE 130 (334)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL-----E~FKk~LmqSLqeD~ 130 (334)
.|....++.++|.+|.+.+...+.++...+.+. +.|.+.+..-|++=.
T Consensus 340 ~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~ 392 (563)
T TIGR00634 340 QLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKALA 392 (563)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344445566777778888888888888888777 778888877776643
No 147
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=79.57 E-value=29 Score=37.17 Aligned_cols=99 Identities=23% Similarity=0.326 Sum_probs=58.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHH------HHHH
Q 019884 26 PFEQLDVARKITSIAISTRVSD-----------LESEHSALRSQLAEKDSR-I--AELQSQIESIYSSLS------DKLG 85 (334)
Q Consensus 26 PyEQLdlArkIts~A~atRVs~-----------LE~E~~~LR~~laEKd~~-i--~~Lq~r~~~le~~L~------~rL~ 85 (334)
-|-||-||+|+=..-+-.||.. |+.|+..++..|..=..+ . .+-++.|..|+..|. .|+.
T Consensus 196 ~F~~lsL~f~~D~~TLe~R~~~~eR~RdlaEeNl~kEi~~~~~~l~~l~~lc~~d~e~~e~~~kl~~~l~~l~~~~~rvs 275 (538)
T PF05781_consen 196 EFLRLSLGFKCDRFTLEKRLKLEERSRDLAEENLKKEIENCLKLLESLAPLCWEDNESREIIQKLQKSLDVLHQCATRVS 275 (538)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3779999999999999999864 555666666555422221 1 222333333333333 3332
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHhh
Q 019884 86 -------QAQADKERLSKENEALTNTVRKLQR----DVSKLEVFRKTLVQS 125 (334)
Q Consensus 86 -------~a~~e~~kL~kE~~sLa~TvKKL~R----DvaKLE~FKk~LmqS 125 (334)
++.|| .++.+--....+-|-.|.| +-+.|+-|||.|+|.
T Consensus 276 s~AE~lGAv~QE-~R~SkAvevM~qhvenLkr~~~kehaeL~E~k~~l~qn 325 (538)
T PF05781_consen 276 SRAEMLGAVHQE-SRVSKAVEVMIQHVENLKRMYEKEHAELEELKKLLLQN 325 (538)
T ss_pred HHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 22222 2345555566666777766 455699999998763
No 148
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.36 E-value=56 Score=30.65 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 28 EQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 78 (334)
.++|=+..+..-.+..+.. ...++..+-.+-.+-...+..|+++++.|+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~-sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 21 ATLDQAQQVQQQWVQAAQQ-SQKRIDQWDDEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544432 2234444444444444444444444444443
No 149
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=79.13 E-value=28 Score=27.07 Aligned_cols=56 Identities=30% Similarity=0.395 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
+.||+||.. |..+-.+|. ++-...-++..||..+...|..|..|-+.|-.-+..|.
T Consensus 4 saL~~Eira-------kQ~~~eEL~-kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 4 SALEAEIRA-------KQAIQEELT-KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467777653 444445554 45544444558888998888888877777766665543
No 150
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=79.10 E-value=10 Score=29.46 Aligned_cols=46 Identities=15% Similarity=0.414 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 68 ~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
++++|+..+|..+ ....++..+|-+-...+...++.++.++.+|+.
T Consensus 3 ~i~e~l~~ie~~l----~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 3 DIKEKLNRIETKL----DNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555322 233344444444444555557777777777765
No 151
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=78.98 E-value=39 Score=30.78 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=29.6
Q ss_pred hHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 019884 15 PEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKD 63 (334)
Q Consensus 15 p~eilavLPsDPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd 63 (334)
|..+|--.=.|--++|.=+++-+..+++.+ ..||.++..+...+.+..
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~-~~le~~~~~~~~~~~~~~ 71 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMANQ-KRLERKLDEAEEEAEKWE 71 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 566666666666777777777666665543 456666666666555433
No 152
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.95 E-value=31 Score=27.45 Aligned_cols=7 Identities=29% Similarity=0.705 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 019884 68 ELQSQIE 74 (334)
Q Consensus 68 ~Lq~r~~ 74 (334)
.|+.||.
T Consensus 8 ~LE~ki~ 14 (72)
T PF06005_consen 8 QLEEKIQ 14 (72)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 153
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=78.76 E-value=16 Score=29.90 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=47.6
Q ss_pred CCCChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 11 ~f~Lp~eilavLPsDPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
..+||++|...+ .++...+...|..--...|+.+...+.+.+.+-+....++.+++..++.++
T Consensus 56 ~~~lP~~l~~~~-------~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 118 (120)
T PF11740_consen 56 APDLPEALQDAL-------AELMARLWEAAQEEAEEELEAARAELEQERAAAEAELAEAEAQAEELEAEL 118 (120)
T ss_pred ccCCChhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666654422 467788888888888888888888888888888888888888888887665
No 154
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=78.74 E-value=37 Score=36.47 Aligned_cols=87 Identities=18% Similarity=0.371 Sum_probs=49.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH-HHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKEN-EALTNTV 105 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-----------------~rL~~a~~e~~kL~kE~-~sLa~Tv 105 (334)
|.+.||+|+.-++.....=+..+..|......|..+|. .+....+++.+-+...+ ..+-.+.
T Consensus 149 ~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~ 228 (546)
T KOG0977|consen 149 RLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEER 228 (546)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44555555555555555444444555555554444444 22222333333333222 2355677
Q ss_pred HHHhhhH--HHHHHHHHHHHhhccccc
Q 019884 106 RKLQRDV--SKLEVFRKTLVQSLKDDE 130 (334)
Q Consensus 106 KKL~RDv--aKLE~FKk~LmqSLqeD~ 130 (334)
++..||. ..=+-||..|.++|+|=-
T Consensus 229 ~~~~rd~t~~~r~~F~~eL~~Ai~eiR 255 (546)
T KOG0977|consen 229 RKARRDTTADNREYFKNELALAIREIR 255 (546)
T ss_pred HHHhhcccccchHHHHHHHHHHHHHHH
Confidence 8889998 778999999999998753
No 155
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=78.66 E-value=43 Score=38.04 Aligned_cols=43 Identities=30% Similarity=0.480 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHHHHHHHhhc
Q 019884 84 LGQAQADKERLSKENEALTNTVRKLQRDVSK-----------LEVFRKTLVQSL 126 (334)
Q Consensus 84 L~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK-----------LE~FKk~LmqSL 126 (334)
|..+.+.+.++.++|.+|..+|-++.|.... ||.||+.|...+
T Consensus 454 le~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~ 507 (980)
T KOG0980|consen 454 LESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLL 507 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3445555566777777777777776665433 566666655433
No 156
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=78.58 E-value=15 Score=35.57 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=31.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
-.+.|.++..|+..+..+|+.|..||+.+-+.|..|.
T Consensus 69 q~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLt 105 (272)
T KOG4552|consen 69 QQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILT 105 (272)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999999998887
No 157
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=78.28 E-value=7.5 Score=40.61 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=40.8
Q ss_pred ChhhhHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 25 DPFEQLDVARKITSI-AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 25 DPyEQLdlArkIts~-A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
+|.+|+++=-.+... .+...+..+..+...++++|.+......++++++..++.++.
T Consensus 142 ~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ 199 (563)
T TIGR00634 142 RPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLE 199 (563)
T ss_pred CHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 888998777776653 467777777777777777777766666666666666666554
No 158
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.24 E-value=34 Score=37.29 Aligned_cols=86 Identities=22% Similarity=0.375 Sum_probs=61.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS----KL 115 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva----KL 115 (334)
.+-.++..||.-+.+|.....+=++.+.+|+..++.|+..|. +++.-.......-+|-..+-..+-+|.+.|. +.
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~-~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELE-RFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888888888888888888887774 5555555666666677777777777776664 46
Q ss_pred HHHHHHHHhhc
Q 019884 116 EVFRKTLVQSL 126 (334)
Q Consensus 116 E~FKk~LmqSL 126 (334)
|-+|+.|-+-.
T Consensus 498 e~L~~~l~~l~ 508 (652)
T COG2433 498 EELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 159
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=78.09 E-value=19 Score=41.31 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=15.4
Q ss_pred HHHHHhhhhhcCCCChhHHHHHHHhhccc
Q 019884 304 EETLRKTDEVFGPENKDLYTIFEGLITRN 332 (334)
Q Consensus 304 EETL~KA~eIFG~~NkdLY~~FegLL~R~ 332 (334)
.|.|+...++.|.-+. .|.-|..+|+++
T Consensus 915 ~e~L~~l~~~l~~R~~-~~qk~r~~~~~~ 942 (1074)
T KOG0250|consen 915 DELLKALGEALESREQ-KYQKFRKLLTRR 942 (1074)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4455566666655443 456666655554
No 160
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=78.03 E-value=37 Score=33.43 Aligned_cols=64 Identities=16% Similarity=0.321 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019884 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 50 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (334)
.|....+.+|..+..++..+++.+...|..+. .|+..+.++...|..|+..|..+|..+.--|.
T Consensus 193 ~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 193 EEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444555555555544 44455555555555566666666655554333
No 161
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.01 E-value=12 Score=42.22 Aligned_cols=93 Identities=22% Similarity=0.281 Sum_probs=74.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019884 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQ----SQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq----~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (334)
.-+--+++.||.|..+||..|..-+...+.|. .++..||.++ +.|+.-+.++.+|.+-+..-..+++||.-.+-.
T Consensus 512 ~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~-s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~ 590 (913)
T KOG0244|consen 512 GTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQI-SLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHI 590 (913)
T ss_pred hhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHH-HHHHHhhHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 44555677788888899998887666444443 3455555555 688888899999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCC
Q 019884 115 LEVFRKTLVQSLKDDEDA 132 (334)
Q Consensus 115 LE~FKk~LmqSLqeD~~~ 132 (334)
+|.-|.+||+-..+|.+.
T Consensus 591 ~k~~kv~l~~~~~~d~ek 608 (913)
T KOG0244|consen 591 AKGQKVQLLRVMKEDAEK 608 (913)
T ss_pred HHHHHHHHHHHHhhhHHH
Confidence 999999999999998874
No 162
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=77.93 E-value=8.6 Score=34.52 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=32.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAE-LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~-Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (334)
.+..++-.+|.+...++.+.......... +.+....++.++ ....+|..+..+|.+.|..+++.|++.
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei----~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEI----EKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555554432222211 112222222222 244444445666666777777777654
No 163
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=77.93 E-value=57 Score=31.32 Aligned_cols=100 Identities=19% Similarity=0.301 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 019884 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLS----DKLGQAQADKERLSKE 97 (334)
Q Consensus 27 yEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd-----~~i~~Lq~r~~~le~~L~----~rL~~a~~e~~kL~kE 97 (334)
.++|+-...-...++..++...+..+..|...+.... +.+...+.++..+...|. .+|....+...+|.+.
T Consensus 149 ~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~l~~~ 228 (319)
T PF02601_consen 149 LQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAIQQKLQRKRQRLQNLSNR 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566667777777888888888888888888887655 457777777777776665 3333333333333211
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019884 98 NEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 98 ~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (334)
- ...+--.++++...++..|++.+.+.+.
T Consensus 229 l-~~~~~~~~l~~~~~~~~~l~~~~~~~l~ 257 (319)
T PF02601_consen 229 L-KRQSPQQKLNQQRQQLQRLQKRLQRKLS 257 (319)
T ss_pred h-hhhhhhhHHHHHHHHhhhhhHHHhhhhH
Confidence 1 1111222333344555555555554443
No 164
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=77.93 E-value=18 Score=30.78 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 85 GQAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 85 ~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
...++||+.|.-||+.|-..+.++..
T Consensus 32 ~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 32 QELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37788888888888888777766654
No 165
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=77.79 E-value=18 Score=40.26 Aligned_cols=43 Identities=26% Similarity=0.300 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (334)
..+.+|+|+++.|..|-+++.+.+-.+++|=.||-+|+-.|-+
T Consensus 209 kermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~ 251 (916)
T KOG0249|consen 209 KERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRG 251 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4566899999999999999999999888888888888766654
No 166
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=77.66 E-value=19 Score=31.94 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 49 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
--+...||..+......+...+..+..+..+|.
T Consensus 18 ~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~ 50 (135)
T TIGR03495 18 SQRLRNARADLERANRVLKAQQAELASKANQLI 50 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345566667776666666666666666666664
No 167
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=77.65 E-value=36 Score=37.07 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=52.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKER-------LSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~k-------L~kE~~sLa~TvKKL~RDva 113 (334)
|=..|+.|+.+||..+.+-|..|..++..++.-|.++. +++..+..++.= -..+...|..-.|+|+.-|.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999999998887 444444444332 33444455555555555555
Q ss_pred HHHHHH
Q 019884 114 KLEVFR 119 (334)
Q Consensus 114 KLE~FK 119 (334)
.|+...
T Consensus 160 ~~q~~~ 165 (632)
T PF14817_consen 160 QLQDIQ 165 (632)
T ss_pred HHHHHH
Confidence 554433
No 168
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=77.52 E-value=20 Score=32.87 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q 019884 94 LSKENEALTNTVRKLQRDVSKLEVF 118 (334)
Q Consensus 94 L~kE~~sLa~TvKKL~RDvaKLE~F 118 (334)
++.++......|..|.+.-..|+.+
T Consensus 161 ~~~~~k~~~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 161 RQEEEKKHQEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666555443
No 169
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=77.45 E-value=50 Score=32.56 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=22.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
..-+..++.|+..|.+.-.+...++.+|+.....++.++.
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELE 81 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666666666665554
No 170
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=77.33 E-value=55 Score=31.28 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 49 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
..++..+..+++..+..+..+++++..+...++
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 166 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQ 166 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555666666666655555554
No 171
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=77.09 E-value=28 Score=37.15 Aligned_cols=60 Identities=23% Similarity=0.422 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019884 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (334)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~r~~~le~~L~------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (334)
+.+|...+.+|++.|..||++...|-.++. .-...-.+|.++|.+|-+-.--..-+|...
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~ 397 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKS 397 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 556777778888888888888888888776 333444455555555555444444444433
No 172
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.86 E-value=18 Score=41.46 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=47.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (334)
.+.|++|++.|+.++..=......+++.+.....-+. ..+.....++.+...|+....-.+|||..+|.|++.=++.
T Consensus 845 ~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~ 924 (1174)
T KOG0933|consen 845 ISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKAN 924 (1174)
T ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHH
Confidence 4444444444444444333333333333333332222 3455556677888899999999999999999999876655
Q ss_pred HH
Q 019884 122 LV 123 (334)
Q Consensus 122 Lm 123 (334)
.-
T Consensus 925 ~~ 926 (1174)
T KOG0933|consen 925 AR 926 (1174)
T ss_pred HH
Confidence 43
No 173
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=76.73 E-value=42 Score=35.42 Aligned_cols=75 Identities=24% Similarity=0.380 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhh---------HHH
Q 019884 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV--------RKLQRD---------VSK 114 (334)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~Tv--------KKL~RD---------vaK 114 (334)
+..+|+.+.+-....++|+.+++....+...++....+-.++|..+-.+|++.+ ...++. =.+
T Consensus 69 l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~ 148 (475)
T PRK10361 69 VRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQ 148 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333333333333333333333333333333555566666677777777777643 111221 135
Q ss_pred HHHHHHHHHhhc
Q 019884 115 LEVFRKTLVQSL 126 (334)
Q Consensus 115 LE~FKk~LmqSL 126 (334)
|+.|++.|-+.-
T Consensus 149 l~~f~~~v~~~~ 160 (475)
T PRK10361 149 LDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHH
Confidence 788888775443
No 174
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=76.65 E-value=25 Score=41.19 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=56.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----
Q 019884 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS----- 113 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva----- 113 (334)
+.+-.+|..+|.|+.+|+-++.+-+ ++.-++++..|+...+ ...-+.+.+..+...+.+.|+++.+.|.
T Consensus 1011 ~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~----~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~k 1084 (1294)
T KOG0962|consen 1011 RNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEERE----KLSSEKNLLLGEMKQYESQIKKLKQELREKDFK 1084 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHH----HhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 5566777777777777777777655 6666666666665555 5666677777778888888888888887
Q ss_pred -HHHHHHHHHHh
Q 019884 114 -KLEVFRKTLVQ 124 (334)
Q Consensus 114 -KLE~FKk~Lmq 124 (334)
+.+.|++++++
T Consensus 1085 d~~~nyr~~~ie 1096 (1294)
T KOG0962|consen 1085 DAEKNYRKALIE 1096 (1294)
T ss_pred cHHHHHHHHHHH
Confidence 46666666554
No 175
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=76.59 E-value=37 Score=33.93 Aligned_cols=90 Identities=24% Similarity=0.367 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 019884 26 PFEQLDVARKITSIAISTRVSDL---ESEHSALRSQLAE-KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE---- 97 (334)
Q Consensus 26 PyEQLdlArkIts~A~atRVs~L---E~E~~~LR~~laE-Kd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE---- 97 (334)
|..|=+|+.|=.-.=++--+.+| |.||..||.||+- ++.-|+|==-| .|++|. |+.|..|..+|..-
T Consensus 62 PLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHR---VEAQLA--LKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 62 PLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHR---VEAQLA--LKEARKEIKQLKQVIETM 136 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 56788888776554444333332 4455555555552 22222222112 234443 66777777777653
Q ss_pred HHHHHHHHHHHhh-------hHHHHHHHHH
Q 019884 98 NEALTNTVRKLQR-------DVSKLEVFRK 120 (334)
Q Consensus 98 ~~sLa~TvKKL~R-------DvaKLE~FKk 120 (334)
|++|+..=|.+++ .--|||+|=.
T Consensus 137 rssL~ekDkGiQKYFvDINiQN~KLEsLLq 166 (305)
T PF15290_consen 137 RSSLAEKDKGIQKYFVDINIQNKKLESLLQ 166 (305)
T ss_pred HhhhchhhhhHHHHHhhhhhhHhHHHHHHH
Confidence 4555555444333 4467998755
No 176
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=76.55 E-value=59 Score=29.43 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
+-.|..+..+|..+...+...-...+.++..+|..+...-+........|..|+..|...+|.+.-.+.+|+
T Consensus 52 ~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rle 123 (158)
T PF09744_consen 52 LELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLE 123 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 333334444444433333333333444555555555433334444455555555555555555555555554
No 177
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.50 E-value=18 Score=36.74 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=13.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAEL 69 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~L 69 (334)
.+..|+.++..|+.++++....+.++
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555555555555555555555544
No 178
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=76.35 E-value=59 Score=29.55 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=58.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRI-----AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i-----~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
+...|-+||......|.+|+|=.+.. .++++=|+.+.. +|-+|....++-.+|.+.||.|-..+++|..=|.|-
T Consensus 46 ~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~-lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierA 124 (159)
T PF05384_consen 46 VIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHE-LQVRLAMLREREKQLRERRDELERRLRNLEETIERA 124 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999998755543 344444444432 335666888888999999999999999999999988
Q ss_pred HHHH
Q 019884 116 EVFR 119 (334)
Q Consensus 116 E~FK 119 (334)
|.+=
T Consensus 125 E~l~ 128 (159)
T PF05384_consen 125 ENLV 128 (159)
T ss_pred HHHH
Confidence 7653
No 179
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=76.28 E-value=26 Score=36.61 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=28.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
..-.-.|++|...+++++++|+.++.+||+...++-..+.
T Consensus 33 ~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 33 SAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334457777788888888888888888877776655554
No 180
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=76.15 E-value=38 Score=31.44 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=34.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
-+.--+.+...|++.||.+|-.....+.+++.++-..|..|.
T Consensus 58 ~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~ 99 (194)
T PF15619_consen 58 ELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELL 99 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788889999999988888888888888888888777
No 181
>PRK02119 hypothetical protein; Provisional
Probab=76.09 E-value=17 Score=28.78 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019884 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 100 sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (334)
.|..+|-+.++++++|+.==+.|.+.|.+-
T Consensus 27 ~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 27 ELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666666666665555666666553
No 182
>PRK12704 phosphodiesterase; Provisional
Probab=76.00 E-value=74 Score=33.65 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=10.0
Q ss_pred HHHHHHHHhhcccccC
Q 019884 116 EVFRKTLVQSLKDDED 131 (334)
Q Consensus 116 E~FKk~LmqSLqeD~~ 131 (334)
|..|+.||..+.++-.
T Consensus 153 ~ea~~~l~~~~~~~~~ 168 (520)
T PRK12704 153 EEAKEILLEKVEEEAR 168 (520)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3457777777766543
No 183
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=75.83 E-value=38 Score=31.87 Aligned_cols=86 Identities=20% Similarity=0.262 Sum_probs=59.6
Q ss_pred hcCCCChh-hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 019884 20 QVLPSDPF-EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS--- 95 (334)
Q Consensus 20 avLPsDPy-EQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~--- 95 (334)
+-+|..+- .|..+.+.-+.++=+.+... ..++.++.+|-+.|+++.+++..||.. -+++...+++.+.+.
T Consensus 44 ~~~~~~~~~~~~e~~k~~~~i~da~~dq~-----~~~q~e~~~~lk~~a~~~E~lk~lE~~-kae~k~~~e~re~~l~~~ 117 (192)
T COG3334 44 AELAEKKAAAQSEIEKFCANIADAAADQL-----YALQKELLEKLKDLAEVNERLKALEKK-KAELKDLEEEREGILRSK 117 (192)
T ss_pred hhcccccchhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45555554 88888888777776666655 777888888888888888888888875 566667777776666
Q ss_pred -HHHHHHHHHHHHHhhh
Q 019884 96 -KENEALTNTVRKLQRD 111 (334)
Q Consensus 96 -kE~~sLa~TvKKL~RD 111 (334)
.|.+-|+.+++++-=|
T Consensus 118 qae~~klv~iY~~Mkp~ 134 (192)
T COG3334 118 QAEDGKLVKIYSKMKPD 134 (192)
T ss_pred HhhhhHHHHHHHcCChh
Confidence 3333355555555443
No 184
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=75.65 E-value=20 Score=41.19 Aligned_cols=60 Identities=20% Similarity=0.387 Sum_probs=40.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (334)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sL 101 (334)
+.+++.-+.-||+-+++||++|.||-...-+|+.-+..++..+. ...++++.+..|..+.
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~----klrqe~~e~l~ea~ra 231 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEIS----KLRQEIEEFLDEAHRA 231 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Confidence 34566667777888888888888888888888877777776664 4444444444444333
No 185
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.65 E-value=64 Score=38.48 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=13.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHH
Q 019884 39 IAISTRVSDLESEHSALRSQLAE 61 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~laE 61 (334)
.-|..++..||.++...+..+..
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyleL 339 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLNL 339 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665555443
No 186
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=75.60 E-value=1.1e+02 Score=32.52 Aligned_cols=30 Identities=10% Similarity=0.439 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhhhh
Q 019884 283 YEQFAIFLANVKELNAHKQTKEETLRKTDE 312 (334)
Q Consensus 283 YEQFsaFLANIKELNAhkQTREETL~KA~e 312 (334)
|+.|..|....-++-.+..+-.....+|-.
T Consensus 379 ydkl~~f~~~~~klG~~L~~a~~~y~~A~~ 408 (475)
T PRK10361 379 YDKMRLFVDDMSAIGQSLDKAQDNYRQAMK 408 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665555555555544443
No 187
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.43 E-value=78 Score=33.43 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=10.1
Q ss_pred HHHHHHHHhhcccccC
Q 019884 116 EVFRKTLVQSLKDDED 131 (334)
Q Consensus 116 E~FKk~LmqSLqeD~~ 131 (334)
|-.|..||..+.++-.
T Consensus 147 ~eak~~l~~~~~~~~~ 162 (514)
T TIGR03319 147 EEAKEILLEEVEEEAR 162 (514)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3457777777766643
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=75.36 E-value=22 Score=33.99 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 49 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
|..+.+|=+.+.-+...+.+|+.++..|..++. ......+.+..|.+.|..--|.|..||+++
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~----~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDID----SLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555666677777777766664 444555566667777777777777777764
No 189
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=75.29 E-value=24 Score=39.15 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=29.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
.|+.|++|..+|++-|+.|.+....+++-|..+.+.+
T Consensus 496 ~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~ 532 (961)
T KOG4673|consen 496 LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAEL 532 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999887776666666555444
No 190
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=75.06 E-value=22 Score=34.92 Aligned_cols=86 Identities=22% Similarity=0.381 Sum_probs=64.2
Q ss_pred HhcCCCChhhhHHHHHHHHHH---H------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 19 LQVLPSDPFEQLDVARKITSI---A------ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQA 89 (334)
Q Consensus 19 lavLPsDPyEQLdlArkIts~---A------~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~ 89 (334)
+.||=+ ..+.+--|+++-.. + .-.+|...+.|...+...|.++...+.++++|+.. +.+||..+..
T Consensus 168 V~WLR~-~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e----~~~rl~~l~~ 242 (269)
T PF05278_consen 168 VDWLRS-KLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITE----MKGRLGELEM 242 (269)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 345544 55555566555332 2 23456666788888888899999999999999863 3478889999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 019884 90 DKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL~ 109 (334)
+-.+|.+.-..+...|+|..
T Consensus 243 ~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 243 ESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999875
No 191
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=75.06 E-value=0.94 Score=48.57 Aligned_cols=31 Identities=23% Similarity=0.523 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 76 (334)
+.||.+||.++.+.|.||.| +.+|+.||..|
T Consensus 307 a~r~~klE~~ve~YKkKLed----~~~lk~qvk~L 337 (713)
T PF05622_consen 307 ADRADKLENEVEKYKKKLED----LEDLKRQVKEL 337 (713)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 55778888888888777665 44444444433
No 192
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=74.49 E-value=11 Score=28.92 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=25.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
||..||.++++|-..+.-=...+.+|.+.++.++...+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888887777766666666667766666665443
No 193
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=74.44 E-value=13 Score=39.15 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019884 59 LAEKDSRIAELQSQIESI 76 (334)
Q Consensus 59 laEKd~~i~~Lq~r~~~l 76 (334)
|+|-.....+|+++++.|
T Consensus 71 LteqQ~kasELEKqLaaL 88 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 194
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=74.39 E-value=22 Score=34.79 Aligned_cols=84 Identities=23% Similarity=0.279 Sum_probs=49.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEK-------DSRIAELQSQIESIYSSLSDKLGQAQADKERLSK----ENEALTNTVRKL 108 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEK-------d~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~k----E~~sLa~TvKKL 108 (334)
+...-++.|+.+...++.+|++- .-.+..|+.++..|+.++. ++..++.. ..+.+......|
T Consensus 211 ~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~-------~e~~~i~~~~~~~l~~~~~~~~~L 283 (362)
T TIGR01010 211 AQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQID-------EQRNQLSGGLGDSLNEQTADYQRL 283 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHH-------HHHHHhhcCCCccHHHHHHHHHHH
Confidence 34444556666666666555543 3456677888888887765 12222211 234445567788
Q ss_pred hhhHHHHHHHHHHHHhhccccc
Q 019884 109 QRDVSKLEVFRKTLVQSLKDDE 130 (334)
Q Consensus 109 ~RDvaKLE~FKk~LmqSLqeD~ 130 (334)
.||++=-+..=..+++.+++-.
T Consensus 284 ~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 284 VLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876666666666666544
No 195
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=74.28 E-value=21 Score=27.73 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019884 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (334)
Q Consensus 100 sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (334)
.|..+|-+.++++++|+.--+.|..-|.+-.
T Consensus 22 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 22 ELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666666666666666644
No 196
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=74.28 E-value=39 Score=35.58 Aligned_cols=70 Identities=23% Similarity=0.439 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhHHH
Q 019884 62 KDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKENEALTNT----------VRKLQRDVSK 114 (334)
Q Consensus 62 Kd~~i~~Lq~r~~~le~~L~-----------------~rL~~a~~e~~kL~kE~~sLa~T----------vKKL~RDvaK 114 (334)
-...+.++++++..|...|. ..|.++.+.+..|..|-+.|... ++++..++.+
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~ 359 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLES 359 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHH
Confidence 34455555566555554443 56788889999999999999988 9999999998
Q ss_pred HHHHHHHHHhhcccccC
Q 019884 115 LEVFRKTLVQSLKDDED 131 (334)
Q Consensus 115 LE~FKk~LmqSLqeD~~ 131 (334)
|+.=-+.+...+.+...
T Consensus 360 Le~~~~~~~~~i~~~~~ 376 (569)
T PRK04778 360 LEKQYDEITERIAEQEI 376 (569)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 88777767666655443
No 197
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=73.84 E-value=23 Score=27.51 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 88 QADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
.+-.+.|.+.--.....+.+|.|.|..|
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L 44 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRLL 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334333333444444444444444
No 198
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=73.52 E-value=16 Score=30.65 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (334)
...+++.+|..+|+.|...|+.|+.|-+=+|.-=|.=+.
T Consensus 38 ~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg 76 (105)
T PRK00888 38 AQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELG 76 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcC
Confidence 566677778888888888888888766666655554443
No 199
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=73.50 E-value=56 Score=31.12 Aligned_cols=38 Identities=24% Similarity=0.167 Sum_probs=25.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
..|..||.|+..|+.....+...+..|+.....+-..+
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~ 105 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQEL 105 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888887777777777777765544444333
No 200
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=73.45 E-value=17 Score=27.39 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (334)
....+.++|.+|++.|...+++|..|-+-+|.+=|
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33444556666677777777777667777766655
No 201
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=73.39 E-value=51 Score=36.73 Aligned_cols=41 Identities=34% Similarity=0.398 Sum_probs=23.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
.-.+-..|-+|+.+||.+|-+|...+...+..+..++..+.
T Consensus 334 ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~ 374 (775)
T PF10174_consen 334 KEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKS 374 (775)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666666555555555555443
No 202
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=73.25 E-value=16 Score=27.52 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAELQSQ 72 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~Lq~r 72 (334)
.+..|+..|..++++-...+.+|+++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~e 46 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEE 46 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333443333333333333333333
No 203
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=73.17 E-value=37 Score=31.25 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHH
Q 019884 76 IYSSLSDKLGQAQADKERLSKENEAL-------TNTVRKLQRDVSKLE 116 (334)
Q Consensus 76 le~~L~~rL~~a~~e~~kL~kE~~sL-------a~TvKKL~RDvaKLE 116 (334)
||.+| .||..-.+.++.|..-|+-| -.+-..|..|+.||-
T Consensus 62 Le~~l-~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt 108 (182)
T PF15035_consen 62 LEEAL-IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLT 108 (182)
T ss_pred HHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 46666666666666666666 455566777777763
No 204
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.16 E-value=89 Score=29.88 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
+.||.++.+=..+..+|...++.+|..= ..|.....|.+.|..|+.+++.-++-.+-|+..||+
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~ 67 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERMAHVEELRQINQDINTLEN 67 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444444444444444444333 244455555555555555555555555555555544
No 205
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=73.07 E-value=76 Score=29.10 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 019884 86 QAQADKERLSKENE 99 (334)
Q Consensus 86 ~a~~e~~kL~kE~~ 99 (334)
......+.+.+..+
T Consensus 145 ~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 145 ELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 206
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=72.97 E-value=47 Score=36.76 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=48.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAE-------LQSQIESIYSSLS----------DKLGQAQADKERLSKENEALT 102 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~-------Lq~r~~~le~~L~----------~rL~~a~~e~~kL~kE~~sLa 102 (334)
.|..||-.||.|+..+|+.+.-....+.. |.+-.+.+|.+.. -|=.+.++|...|-+||=+|.
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ 110 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 36778889999999999888644433333 3333333443322 222334566677777777777
Q ss_pred HHHHHHhhhHHHHHHHH
Q 019884 103 NTVRKLQRDVSKLEVFR 119 (334)
Q Consensus 103 ~TvKKL~RDvaKLE~FK 119 (334)
.+|--|..-=--.|.+|
T Consensus 111 Kqvs~Lk~sQvefE~~K 127 (717)
T PF09730_consen 111 KQVSVLKQSQVEFEGLK 127 (717)
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 77766655544555554
No 207
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=72.88 E-value=51 Score=27.03 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADK 91 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~ 91 (334)
.||..+.+|-...+.-|..+.++......++..+. +|......+
T Consensus 28 ~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k-~L~~~~~Ks 71 (96)
T PF08647_consen 28 ILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMK-KLNTQLSKS 71 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHh
Confidence 34555555555555555555555555555555543 333333333
No 208
>PRK02793 phi X174 lysis protein; Provisional
Probab=72.83 E-value=23 Score=27.94 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=13.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019884 102 TNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 102 a~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (334)
..+|-+.++++++|+.--+.|.+.|.+-
T Consensus 28 n~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 28 NVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444555544444444445443
No 209
>PRK12705 hypothetical protein; Provisional
Probab=72.81 E-value=49 Score=35.11 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHH--------HHHHHHHhhcc
Q 019884 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR----DVSKLE--------VFRKTLVQSLK 127 (334)
Q Consensus 60 aEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~R----DvaKLE--------~FKk~LmqSLq 127 (334)
.++...+...+.|+.+.|..|..|.........+|.+....|...-++|.. ...+|| ..|+.||..+.
T Consensus 73 ~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~lt~~eak~~l~~~~~ 152 (508)
T PRK12705 73 RREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLD 152 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 334444444445555555555444444444444444444444333333222 223343 35888888888
Q ss_pred cccC
Q 019884 128 DDED 131 (334)
Q Consensus 128 eD~~ 131 (334)
++-.
T Consensus 153 ~~~~ 156 (508)
T PRK12705 153 AELE 156 (508)
T ss_pred HHHH
Confidence 7644
No 210
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.79 E-value=16 Score=36.67 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019884 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQ------AQ--ADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (334)
Q Consensus 50 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~------a~--~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (334)
.-++.|+|.|..=...-..|..+++.||..|. +|.. +- +.+.+---||..|+.-+-+-.+.--||-+=+..
T Consensus 30 dairiL~QdLEkfe~Ekd~~a~~aETLeln~e-alere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~ea 108 (389)
T KOG4687|consen 30 DAIRILGQDLEKFENEKDGLAARAETLELNLE-ALERELELLAACGCDAKIEFGTERQDLAADIEETKEENLKLRTDREA 108 (389)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHhHhhhHHHHH
Confidence 33566666666555555566666666666554 1111 10 111223346677777777777777777777777
Q ss_pred HHhhcccc
Q 019884 122 LVQSLKDD 129 (334)
Q Consensus 122 LmqSLqeD 129 (334)
|++.+.|=
T Consensus 109 L~dq~adL 116 (389)
T KOG4687|consen 109 LLDQKADL 116 (389)
T ss_pred HHHHHHHH
Confidence 77766543
No 211
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=72.62 E-value=42 Score=27.53 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 82 DKLGQAQADKERLSKENEALTNTVR 106 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvK 106 (334)
.+|-.++.+.++|..-+..++.-++
T Consensus 53 ~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 53 QELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555554444444333
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=72.61 E-value=17 Score=34.75 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=25.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEA 100 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~s 100 (334)
++-.||.+||.-+..-.+.+.|-...|.+||..|..|-..+. -.|.+..+++..|-.+-|.
T Consensus 37 ~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555443333333333333333333333333332 2222444444444444444
No 213
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=72.25 E-value=78 Score=30.44 Aligned_cols=59 Identities=31% Similarity=0.352 Sum_probs=32.8
Q ss_pred CChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 13 DLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSAL--RSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 13 ~Lp~eilavLPsDPyEQLdlArkIts~A~atRVs~LE~E~~~L--R~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
.|-+||-.||=.+|.+=.| ++..|-.-|+.-..+| ++++++| +.+.+|..++++.+..|
T Consensus 2 sL~Eeikrvl~enpeilvd--------vL~~Rpeilye~l~kL~pwq~latk-~dve~l~~e~E~~~k~l 62 (231)
T COG5493 2 SLAEEIKRVLLENPEILVD--------VLTQRPEILYEVLAKLTPWQQLATK-QDVEELRKETEQRQKEL 62 (231)
T ss_pred CHHHHHHHHHHhCcHHHHH--------HHHhChHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4667777888777744444 3445555555555554 4555555 44555555555554444
No 214
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=72.19 E-value=43 Score=25.88 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 61 EKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
+++..-.+||.-|-.=-..|. .|-++..+|..+-..|.+.+..|+..+.+|
T Consensus 34 ~i~~~~~eLr~~V~~nY~~fI----~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 34 EIEEKDEELRKLVYENYRDFI----EASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444556655555554454 888899999999899999999998888776
No 215
>PRK04863 mukB cell division protein MukB; Provisional
Probab=72.18 E-value=50 Score=39.30 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=23.9
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHH-------HHHHhh---ccccHHHHHHhhhhhcC
Q 019884 266 TRVDGKEFFRQVRNRLSYEQFAIFLAN-------VKELNA---HKQTKEETLRKTDEVFG 315 (334)
Q Consensus 266 ~rVDGKEFFRQARsRLSYEQFsaFLAN-------IKELNA---hkQTREETL~KA~eIFG 315 (334)
+|.+-.+-||.+..++ ++.....++ .++|-- +.|.-+..|+.+..-+|
T Consensus 490 ~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~ 547 (1486)
T PRK04863 490 SRSEAWDVARELLRRL--REQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLG 547 (1486)
T ss_pred CHHHHHHHHHHHHHHh--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5555666666655543 333333333 233333 44555666666665444
No 216
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=72.15 E-value=7 Score=30.28 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=22.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIA 67 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~ 67 (334)
+..|+.-||+||.++++.++.|..+-.
T Consensus 26 L~~RIa~L~aEI~R~~~~~~~K~a~r~ 52 (59)
T PF06698_consen 26 LEERIALLEAEIARLEAAIAKKSASRA 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999998876543
No 217
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.11 E-value=17 Score=42.23 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------------HHHHHHHHHhhcccccC
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSK--------------LEVFRKTLVQSLKDDED 131 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK--------------LE~FKk~LmqSLqeD~~ 131 (334)
+++..+.+...+|..+.+.+...+++-.|+++| +|.=.+.|+.-++.++.
T Consensus 907 ~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~ 970 (1293)
T KOG0996|consen 907 DKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEE 970 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 777777788888888888887777766666555 33334467777766654
No 218
>PRK01156 chromosome segregation protein; Provisional
Probab=71.94 E-value=49 Score=36.23 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Q 019884 90 DKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
+.+.|..+...|..+|.+|...+
T Consensus 696 ~~~~l~~~i~~l~~~~~~l~eel 718 (895)
T PRK01156 696 NRARLESTIEILRTRINELSDRI 718 (895)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Confidence 33334444444444444444433
No 219
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=71.94 E-value=61 Score=27.51 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqS 125 (334)
....++++|..++..|...|++|+-+.+.+|..-|.-...
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~~ 100 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELGM 100 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCC
Confidence 6677888999999999999999998878888777766653
No 220
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.86 E-value=33 Score=33.59 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=46.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FK 119 (334)
++.+...+-.|-..|+..|.|++....++|+|+..|+..+. +..++-.+|-.|-.-|-.-...|--.|.-+|.|.
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s----~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS----RLEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhHHHHHHHHHHHhcccccchHHHH
Confidence 34455666667777777777777777777777777777775 4444444444455555544455555544455443
No 221
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=71.79 E-value=49 Score=33.66 Aligned_cols=88 Identities=33% Similarity=0.439 Sum_probs=60.5
Q ss_pred ChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH---H---------HHH
Q 019884 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDS-------RIAELQSQIESIYSSLS---D---------KLG 85 (334)
Q Consensus 25 DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~-------~i~~Lq~r~~~le~~L~---~---------rL~ 85 (334)
||-+|-+|+ .+=|++||.|...+-.+|+-=.. .|-.|+.|+++|+.+|. . .|.
T Consensus 213 dp~~qaevq--------~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~ 284 (372)
T COG3524 213 DPKAQAEVQ--------MSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLS 284 (372)
T ss_pred ChhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchh
Confidence 788888887 45688999999999988885443 36789999999998887 1 333
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 86 QAQADKERLSKEN----EALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 86 ~a~~e~~kL~kE~----~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
.-..|-+.|.-|| ..|++.++-|. -||.|+-++++
T Consensus 285 ~qaAefq~l~lE~~fAekay~AAl~SlE--sArieAdrqq~ 323 (372)
T COG3524 285 NQAAEFQRLYLENTFAEKAYAAALTSLE--SARIEADRQQL 323 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhh
Confidence 3334444555554 24555556553 36777777765
No 222
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=71.47 E-value=25 Score=38.06 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 55 LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
|++.-+|||.....|+.-...+. .|+....++...|.+|++....-|..|.|.|++|
T Consensus 6 l~qlq~Erd~ya~~lk~e~a~~q----qr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 6 LKQLQAERDQYAQQLKEESAQWQ----QRMQQMSEEVRTLKEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566665555554443333 4444666666666666666666666666666665
No 223
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=71.44 E-value=45 Score=40.50 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lm 123 (334)
.++..+.-+..+|.+|+..|..|-++|..|+.+|..-+.-|+
T Consensus 738 ~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~ 779 (1822)
T KOG4674|consen 738 EKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQ 779 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888889999999999999999999999999998888775
No 224
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.37 E-value=34 Score=33.61 Aligned_cols=57 Identities=25% Similarity=0.514 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 59 LAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 59 laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
+..+|..|.++++.+..++..|. ..+.........+.+|++.+-.-+|+|+.+++.|
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444 3333444444455555555555555555555554
No 225
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=71.27 E-value=34 Score=32.66 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV 105 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~Tv 105 (334)
..+.+|..+|+.++.+|+.....+++++..|..+.. ...+|-..|.+|+..|.+.|
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e----~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE----GLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcccHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555544443 44444444555544444443
No 226
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=71.16 E-value=66 Score=27.59 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=33.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
...+|.+.-.+|.++..+|.++.++-..+..|+.++..++..+.
T Consensus 43 n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~ 86 (150)
T PF07200_consen 43 NEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQD 86 (150)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788899999999999999999999999888887665
No 227
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=71.14 E-value=24 Score=35.06 Aligned_cols=71 Identities=27% Similarity=0.371 Sum_probs=53.1
Q ss_pred HHHHHHHHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 36 ITSIAISTRVSDLESEHS-------ALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTV 105 (334)
Q Consensus 36 Its~A~atRVs~LE~E~~-------~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~Tv 105 (334)
|--+|--.|+..||.|.+ .||..-.|=+.++.+|-+-|+-....+. .+|+...++...|.+++..+...|
T Consensus 229 lG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav 308 (330)
T KOG2991|consen 229 LGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAV 308 (330)
T ss_pred HHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666788899998864 6777777778888888888877776654 778888888888888877776665
Q ss_pred H
Q 019884 106 R 106 (334)
Q Consensus 106 K 106 (334)
+
T Consensus 309 ~ 309 (330)
T KOG2991|consen 309 G 309 (330)
T ss_pred c
Confidence 4
No 228
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=70.96 E-value=14 Score=28.30 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
++++.....-++-..+...|...+.+|+-+++|||.
T Consensus 17 a~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 17 AQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 677777777788888999999999999999999984
No 229
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.92 E-value=16 Score=32.21 Aligned_cols=63 Identities=27% Similarity=0.423 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
..|..|+..|+.++.+-...+..|+..+..|...+- ...+.+...+|.+|+..|..-+..|..
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t--~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPT--NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666666665553 123344445555555555555555543
No 230
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=70.82 E-value=99 Score=29.43 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHhhc
Q 019884 92 ERLSKENEALTNTVRKLQRDVSK-------LEVFRKTLVQSL 126 (334)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaK-------LE~FKk~LmqSL 126 (334)
.-+..+...+..+|.+|.+.|.+ |++-|..|+.-.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 102 KALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555444 445555555443
No 231
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=70.66 E-value=43 Score=38.62 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=46.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-------------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (334)
.++|++....|..++.+++.+...+-.|...|+..+. ..|....+-.+.|-++++.|-..-++|..=
T Consensus 504 lsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~ 583 (1195)
T KOG4643|consen 504 LSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKY 583 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4667777777777777777777666666666665444 333333334444555555555455555555
Q ss_pred HHHHHHHHHH
Q 019884 112 VSKLEVFRKT 121 (334)
Q Consensus 112 vaKLE~FKk~ 121 (334)
+.+|++++++
T Consensus 584 idaL~alrrh 593 (1195)
T KOG4643|consen 584 IDALNALRRH 593 (1195)
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 232
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=70.28 E-value=96 Score=31.51 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=26.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 78 (334)
.+.+|...+++++..+.+++...+..+..++..+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 162 KSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666677777777777777777777776666664444
No 233
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.14 E-value=19 Score=34.60 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=34.1
Q ss_pred HhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 019884 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQL---AEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 19 lavLPsDPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~l---aEKd~~i~~Lq~r~~~le~~L~ 81 (334)
-..||+|||+.- -.-=++-+|...-..+...--.+ .+++..+.++.+.+.-||.+|.
T Consensus 87 ~~iLP~DPy~Ra------~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~ 146 (231)
T KOG0406|consen 87 PPILPSDPYERA------QARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELG 146 (231)
T ss_pred CCCCCCCHHHHH------HHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 358999999852 22224444444334333333332 4666777778888888887775
No 234
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=70.09 E-value=41 Score=33.46 Aligned_cols=65 Identities=25% Similarity=0.294 Sum_probs=36.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSK---ENEALTNTVRKL 108 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~----------~rL~~a~~e~~kL~k---E~~sLa~TvKKL 108 (334)
-++.||.+.+.+++.-..-..-|.+|+.+-..||.+-. .||-+|.+.|+=|.. |+.+|..-|.+|
T Consensus 92 q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRL 169 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRL 169 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555555555544443333444555544444444322 788888888877754 456666666555
No 235
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=70.04 E-value=41 Score=28.24 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=28.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~ 79 (334)
.|..+|..|+..-..|.+.+.++...+...-+....++..
T Consensus 76 ~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~ 115 (213)
T cd00176 76 EIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDA 115 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888888888887777765555555443
No 236
>PRK01156 chromosome segregation protein; Provisional
Probab=69.93 E-value=72 Score=35.01 Aligned_cols=7 Identities=14% Similarity=0.320 Sum_probs=2.7
Q ss_pred Hhhhhhc
Q 019884 308 RKTDEVF 314 (334)
Q Consensus 308 ~KA~eIF 314 (334)
.-|+.||
T Consensus 874 ~~~d~ii 880 (895)
T PRK01156 874 SVADVAY 880 (895)
T ss_pred HhcCeEE
Confidence 3344433
No 237
>PRK00106 hypothetical protein; Provisional
Probab=69.89 E-value=1.2e+02 Score=32.39 Aligned_cols=16 Identities=6% Similarity=0.117 Sum_probs=10.5
Q ss_pred HHHHHHHHhhcccccC
Q 019884 116 EVFRKTLVQSLKDDED 131 (334)
Q Consensus 116 E~FKk~LmqSLqeD~~ 131 (334)
|-.|..||+.+.++-.
T Consensus 168 ~eak~~l~~~~~~~~~ 183 (535)
T PRK00106 168 AEAREIILAETENKLT 183 (535)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3467777777776643
No 238
>PRK04406 hypothetical protein; Provisional
Probab=69.65 E-value=34 Score=27.35 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019884 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (334)
+..|++|+..||..+. .-.+-.. .|..+|-+.++++++|+.==+.|.+.|.+
T Consensus 6 ~~~le~Ri~~LE~~lA----fQE~tIe-------~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 6 IEQLEERINDLECQLA----FQEQTIE-------ELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777775443 3222222 23334444444455544444444444443
No 239
>PF14282 FlxA: FlxA-like protein
Probab=69.51 E-value=26 Score=29.31 Aligned_cols=59 Identities=27% Similarity=0.425 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 63 DSRIAELQSQIESIYSSLSDKLGQAQA-DKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 63 d~~i~~Lq~r~~~le~~L~~rL~~a~~-e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
|..|+.|++++..|+..|. .|....+ ....-.+-...|-..+.-|...|+.|..=+..-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~-~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQ-ELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666665555554 2222000 111223344455555666666666554444333
No 240
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=69.47 E-value=44 Score=30.01 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=40.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (334)
+--||..|-.+...+++++.+.........+..... ..++..++.+|-..|-..+++...|+. ++||
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~----------~~~~~~~~~~ei~~lk~el~~~~~~~~---~Lkk 182 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKL----------LKEENKKLSEEIEKLKKELEKKEKEIE---ALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----------hhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 457888887777777776665554444433322211 335556666666666666666655554 5566
Q ss_pred HH
Q 019884 121 TL 122 (334)
Q Consensus 121 ~L 122 (334)
+.
T Consensus 183 Q~ 184 (192)
T PF05529_consen 183 QS 184 (192)
T ss_pred HH
Confidence 54
No 241
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=69.38 E-value=1e+02 Score=31.19 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 019884 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 28 EQLdlArkIts~A~atRVs~LE~E~~~LR~~la--EKd~~i~~Lq~r~~~le~~L~ 81 (334)
++||-...=...++..++..-+..+..|+..|. --...+..++.++..+...|.
T Consensus 267 q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~ 322 (438)
T PRK00286 267 QRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQ 322 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 356655555667777788777777777777663 223445555555555554444
No 242
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=69.25 E-value=64 Score=37.82 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=23.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
..++..+..++..+++.+......+..+++++..++.++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~ 314 (1353)
T TIGR02680 275 QTQYDQLSRDLGRARDELETAREEERELDARTEALEREAD 314 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666666655444
No 243
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=69.21 E-value=44 Score=32.96 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 86 QAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
....+.....+|+..|...++...+
T Consensus 253 ~l~~~~~~~~~e~~~l~~~~~~~~~ 277 (344)
T PF12777_consen 253 ALQKEYEEAQKEKQELEEEIEETER 277 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444445555444444443
No 244
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=69.11 E-value=23 Score=30.57 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
.|.-...+||-||..||..|-+-+..|+-
T Consensus 77 qRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 77 QRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 45558889999999999999998887764
No 245
>PRK02793 phi X174 lysis protein; Provisional
Probab=69.09 E-value=25 Score=27.79 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 019884 91 KERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~R 110 (334)
..+.+++-+.|...++.|..
T Consensus 31 v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 31 VTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555544
No 246
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=68.73 E-value=38 Score=29.09 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
...+||..|.-||+.|-.-+.++
T Consensus 33 el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 33 ELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77788888888888776655544
No 247
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=68.35 E-value=48 Score=25.41 Aligned_cols=53 Identities=19% Similarity=0.355 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHH
Q 019884 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS-KENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 60 aEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~-kE~~sLa~TvKKL~RDvaKLE 116 (334)
.+|...|.+++..+.+++..|. +-.-|...+- .+|..+...|+....++.+|+
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~----qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLK----QMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777788888888777776665 4444444443 788888888888888888764
No 248
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=67.94 E-value=59 Score=30.60 Aligned_cols=58 Identities=14% Similarity=0.283 Sum_probs=37.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIA-------ELQSQIESIYSSLS------DKLGQAQADKERLSKE 97 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~-------~Lq~r~~~le~~L~------~rL~~a~~e~~kL~kE 97 (334)
.++.+|-.||-.+..|-.++.|+-+... .|..+|..++..|. +|+..+++.+.|-+.|
T Consensus 76 rvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~ 146 (189)
T TIGR02132 76 NVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDE 146 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhH
Confidence 3788888999999888888888766665 34445555555444 5666666655444433
No 249
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=67.68 E-value=1.1e+02 Score=30.84 Aligned_cols=84 Identities=18% Similarity=0.291 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Q 019884 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------------DKLGQAQADKERLSKE 97 (334)
Q Consensus 32 lArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~--------------~rL~~a~~e~~kL~kE 97 (334)
+-..|..-++-.|+..||.|-..||.....=+.....++++-..|=..+. .=|..-.+++...++|
T Consensus 156 ~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEE 235 (306)
T PF04849_consen 156 SQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEE 235 (306)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677889999999999999998776544333333333222211111 2223445555555566
Q ss_pred HHHHHHHHHHHhhhHHHH
Q 019884 98 NEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 98 ~~sLa~TvKKL~RDvaKL 115 (334)
-.+|..+|-+|++-+..+
T Consensus 236 It~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 236 ITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666665555555444
No 250
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=67.66 E-value=56 Score=33.08 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=19.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019884 102 TNTVRKLQRDVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 102 a~TvKKL~RDvaKLE~FKk~LmqSLq 127 (334)
-.+|+.+-+|+.+|..=||+|-+|+.
T Consensus 84 E~~V~~it~dIk~LD~AKrNLT~SIT 109 (383)
T PF04100_consen 84 EQMVQEITRDIKQLDNAKRNLTQSIT 109 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888888876653
No 251
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=67.49 E-value=2.7 Score=27.09 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChh
Q 019884 282 SYEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKD 320 (334)
Q Consensus 282 SYEQFsaFLANIKELNAhkQTREETL~KA~eIFG~~Nkd 320 (334)
++...+.++....++..=.+--++.|.-.+++||++|+|
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 355666777777777777777888999999999999986
No 252
>PRK10869 recombination and repair protein; Provisional
Probab=67.29 E-value=27 Score=36.83 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=31.2
Q ss_pred CChhhhHHHHHHHHH-HHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 24 SDPFEQLDVARKITS-IAISTRVSD-------LESEHSALRSQLAEKDSRIAELQSQIESIY 77 (334)
Q Consensus 24 sDPyEQLdlArkIts-~A~atRVs~-------LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 77 (334)
-||..||++=-.+.. -.+...+.. +..+...|+.+-.++.+.+.-|+-++.+++
T Consensus 137 l~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 137 LKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN 198 (553)
T ss_pred cCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 489999987766654 334444444 444444454444555555555555555554
No 253
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=67.22 E-value=1e+02 Score=34.22 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 30 LdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
++-|+++..-.- .++..|=.++...|.++.++.+.++.+++++..+...|.
T Consensus 504 i~~A~~~~~~~~-~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~ 554 (782)
T PRK00409 504 IEEAKKLIGEDK-EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELE 554 (782)
T ss_pred HHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666654322 245554445555555555555555555544444444444
No 254
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=67.13 E-value=98 Score=29.33 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 019884 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTN 103 (334)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~ 103 (334)
+.+||..=+||-.++-+--.=+....+.|| .-++...+.|.||++||..|-.
T Consensus 22 ~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 22 VRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444444444444444 4455778889999999988864
No 255
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.09 E-value=59 Score=34.39 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 78 (334)
.|=+++..||.++++=......|+++-+.|..
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666655556666655555543
No 256
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=66.44 E-value=53 Score=26.95 Aligned_cols=61 Identities=20% Similarity=0.380 Sum_probs=42.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lm 123 (334)
++.++.+|+.+.|.+ |+++|.|+-.||.+.. .-||......|+.+.=+.+.|-.|-+...
T Consensus 2 KleKi~~eieK~k~K-------iae~Q~rlK~Le~qk~-------------E~EN~EIv~~VR~~~mtp~eL~~~L~~~~ 61 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEK-------IAELQARLKELEAQKT-------------EAENLEIVQMVRSMKMTPEELAAFLRAMK 61 (83)
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456677777777655 5566666666665443 34666778888988888888988887764
Q ss_pred h
Q 019884 124 Q 124 (334)
Q Consensus 124 q 124 (334)
.
T Consensus 62 ~ 62 (83)
T PF14193_consen 62 S 62 (83)
T ss_pred h
Confidence 4
No 257
>PRK00295 hypothetical protein; Provisional
Probab=66.44 E-value=47 Score=25.90 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=13.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019884 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (334)
|..+|-+.++++++|+.=-+.|.+.|.+-
T Consensus 24 Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 24 LNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444455444444444444443
No 258
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=66.44 E-value=1.1e+02 Score=31.27 Aligned_cols=90 Identities=19% Similarity=0.329 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHH-----
Q 019884 32 VARKITSIAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKE---RLSK----- 96 (334)
Q Consensus 32 lArkIts~A~atRVs~LE~E~~~LR~~laEK-----d~~i~~Lq~r~~~le~~L~--~rL~~a~~e~~---kL~k----- 96 (334)
|+++|....=.-.+..++.+...|.++|.+- ...+.+|-.+++.|...+. .++....++.. +|.+
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~e~D~ 91 (367)
T PRK00578 12 LDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAEEEDDE 91 (367)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 6677776666667777788888888777542 2334555556666665555 44554444433 2321
Q ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019884 97 -ENEALTNTVRKLQRDVSKLEVFRKTLV 123 (334)
Q Consensus 97 -E~~sLa~TvKKL~RDvaKLE~FKk~Lm 123 (334)
-++.+...++.|...+.+|| ++ .|+
T Consensus 92 el~~~a~~e~~~l~~~l~~le-~~-~ll 117 (367)
T PRK00578 92 ETLAEAEAELKALEKKLAALE-LE-RLL 117 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HH-Hhc
Confidence 12345577888888888888 44 444
No 259
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=66.36 E-value=50 Score=36.60 Aligned_cols=77 Identities=26% Similarity=0.335 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-Hhhc
Q 019884 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL-VQSL 126 (334)
Q Consensus 50 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~--~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L-mqSL 126 (334)
.++..|+.++. ++.++++|...+..++..++ .+.. ...........+.+...++++...+++++..+..| .+.|
T Consensus 481 ~el~~l~~~i~-~~~~~~~l~~e~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~l~~~~e~~~~~~~~~~~~~l 557 (908)
T COG0419 481 LELEELEEELS-REKEEAELREEIEELEKELRELEEEL--IELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQL 557 (908)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35566666666 25566666666666666665 2222 22233444445566666666666666666666665 4444
Q ss_pred ccc
Q 019884 127 KDD 129 (334)
Q Consensus 127 qeD 129 (334)
+++
T Consensus 558 ~~e 560 (908)
T COG0419 558 KEE 560 (908)
T ss_pred HHH
Confidence 433
No 260
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=66.30 E-value=33 Score=27.55 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=41.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG-QAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~-~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
-|++.-+-.||.|.+-|+-..+ +|++++..++.++..|.+ ....+...|.+.-+.=+.+|.+|.
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~-------~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQ-------ELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888999999999987665 466666666666652222 333445566666666666666654
No 261
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=66.11 E-value=70 Score=32.63 Aligned_cols=86 Identities=16% Similarity=0.295 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---H---
Q 019884 31 DVARKITSIAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK---E--- 97 (334)
Q Consensus 31 dlArkIts~A~atRVs~LE~E~~~LR~~laEK-----d~~i~~Lq~r~~~le~~L~--~rL~~a~~e~~kL~k---E--- 97 (334)
+++.+|-.++-...+..++.+...|.+.+.+- ...+..+-++++.|...+. .++....++...|.+ +
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~e~D 90 (364)
T TIGR00020 11 DLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVEEDD 90 (364)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 46777777776667777777777777777542 2334444445555555444 444444444433322 1
Q ss_pred ---HHHHHHHHHHHhhhHHHHH
Q 019884 98 ---NEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 98 ---~~sLa~TvKKL~RDvaKLE 116 (334)
+.-+...++.|.+++.+||
T Consensus 91 ~e~~~~a~~e~~~l~~~l~~le 112 (364)
T TIGR00020 91 EETFNELDAELKALEKKLAELE 112 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345577889999999999
No 262
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=65.94 E-value=50 Score=36.90 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019884 57 SQLAEKDSRIAELQSQIESI 76 (334)
Q Consensus 57 ~~laEKd~~i~~Lq~r~~~l 76 (334)
..|+|||+.|..|++.-+.|
T Consensus 446 DeLaEkdE~I~~lm~EGEkL 465 (961)
T KOG4673|consen 446 DELAEKDEIINQLMAEGEKL 465 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666544433
No 263
>PLN03188 kinesin-12 family protein; Provisional
Probab=65.86 E-value=73 Score=37.58 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhh
Q 019884 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV-SKLEVFRKTLVQS 125 (334)
Q Consensus 68 ~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv-aKLE~FKk~LmqS 125 (334)
||==|+-++|.++. .|.++-+....|+..|-..+.||.|.- --+.++|..|-.|
T Consensus 1201 ellvrl~eaeea~~----~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~aes 1255 (1320)
T PLN03188 1201 ELLVRLKEAEEALT----VAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLVAES 1255 (1320)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444555554444 333444455555555555666666666 5566777666433
No 264
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=65.80 E-value=63 Score=32.19 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (334)
+.++|+.++-.-+++|-.-|++|..--.-||.-||+-+-||.|-+
T Consensus 95 ~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfe 139 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFE 139 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHH
Confidence 444555555555666666666666666666666666666665544
No 265
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=65.76 E-value=37 Score=29.18 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 28 EQLDVARKITSIAISTRVSDLESEHSALRS------QLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 28 EQLdlArkIts~A~atRVs~LE~E~~~LR~------~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
.||+.|++= -=..||.+||.-...++. -++|+...|.+.+.+|...+..|.
T Consensus 31 ~qI~~Ak~~---gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~ 87 (115)
T PF06476_consen 31 KQIEYAKAH---GNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELK 87 (115)
T ss_pred HHHHHHHHc---CCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555432 224689999999998875 356888888889999988888887
No 266
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=65.69 E-value=74 Score=30.65 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (334)
++.-+-.+-+.|.+++..+++.+.+...++..+..--....+....|..+..++...++.|. .|||.-|+.
T Consensus 188 ~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~---ekme~e~~~ 258 (297)
T PF02841_consen 188 MENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLK---EKMEEEREQ 258 (297)
T ss_dssp HHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 44444555566777777777777777766666551111112223334444444444444443 344444443
No 267
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=65.62 E-value=33 Score=39.73 Aligned_cols=51 Identities=25% Similarity=0.442 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 019884 31 DVARKITSIAIS------TRVSDLESEHSALRSQLAEKDS-RIAELQSQIESIYSSLS 81 (334)
Q Consensus 31 dlArkIts~A~a------tRVs~LE~E~~~LR~~laEKd~-~i~~Lq~r~~~le~~L~ 81 (334)
|-|+||..+|+. .=+..|-.|+..||.+|..+++ ...+|++|++++|.-+.
T Consensus 346 drAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ 403 (1714)
T KOG0241|consen 346 DRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIK 403 (1714)
T ss_pred HHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHH
Confidence 789999999984 3456677899999999987554 46788888888776444
No 268
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=65.45 E-value=39 Score=34.12 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019884 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (334)
Q Consensus 65 ~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FK 119 (334)
.+..|+++++.++..+ ++|...++++.|..+-+..|..++.++.+.++.++.|.
T Consensus 243 ~~~~l~~~~~~~~~~i-~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 243 YLESLQEKLEKLEKEI-EKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555 24444445555666667777777777777777777663
No 269
>smart00338 BRLZ basic region leucin zipper.
Probab=65.42 E-value=25 Score=26.36 Aligned_cols=25 Identities=40% Similarity=0.715 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 92 ERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
..|..||..|...|..|...+..|.
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555543
No 270
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=65.39 E-value=67 Score=25.47 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=11.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019884 101 LTNTVRKLQRDVSKLEVFRKTLVQSL 126 (334)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~LmqSL 126 (334)
|-...+.|..++++|...-.-+-+-|
T Consensus 77 l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 77 LEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333333
No 271
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=65.31 E-value=1.3e+02 Score=31.75 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=55.0
Q ss_pred CCCCChHHHHhc---CCCCh-----------hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 019884 10 STFDLPEEVLQV---LPSDP-----------FEQLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQI 73 (334)
Q Consensus 10 ~~f~Lp~eilav---LPsDP-----------yEQLdlArkIts~A~atRVs~LE~E~~~LR~~la--EKd~~i~~Lq~r~ 73 (334)
.||.|.|-|.-| -|+.. -+||+=-++...+|+..++..-+..+..|+..+. .-++.+..-+.++
T Consensus 236 tD~tL~DfVAD~RApTPTaAAE~~vP~~~el~~~l~~~~~rL~~~~~~~l~~~~~~l~~l~~~l~~~~p~~~l~~~~q~l 315 (440)
T COG1570 236 TDFTLADFVADLRAPTPTAAAELVVPDSAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRL 315 (440)
T ss_pred CCccHHHhhhhccCCCchHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 488888876543 33332 3467777888889999999999999999998887 7778888888888
Q ss_pred HHHHHHHH
Q 019884 74 ESIYSSLS 81 (334)
Q Consensus 74 ~~le~~L~ 81 (334)
..++..|.
T Consensus 316 d~~~~rL~ 323 (440)
T COG1570 316 DELAIRLR 323 (440)
T ss_pred HHHHHHHH
Confidence 87776665
No 272
>PF13514 AAA_27: AAA domain
Probab=64.93 E-value=58 Score=36.99 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=61.7
Q ss_pred HHHHHHHHH-----HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 019884 32 VARKITSIA-----ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEA 100 (334)
Q Consensus 32 lArkIts~A-----~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~------~rL~~a~~e~~kL~kE~~s 100 (334)
|+..+-+.+ +..-+..|+.|...|=..= -+...|..+-+++..++..+. .....+.++...+..+...
T Consensus 114 lg~~Lf~agaG~~~l~~~~~~L~~ea~~Lfkpr-g~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~ 192 (1111)
T PF13514_consen 114 LGQLLFSAGAGLGSLSQVLKQLDKEADELFKPR-GRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEE 192 (1111)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 555555443 2233344444444442221 344567777778888887777 6677788888889999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q 019884 101 LTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~L 122 (334)
|-..+++|..+..+||..++.+
T Consensus 193 l~~~~~~l~~~~~~ler~~~~~ 214 (1111)
T PF13514_consen 193 LRAELKELRAELRRLERLRRAW 214 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987653
No 273
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=64.89 E-value=15 Score=34.52 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
..++|++.-.|.+.+..++..+++||.+.+.++.-+
T Consensus 138 ~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~ 173 (192)
T COG5374 138 IDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLL 173 (192)
T ss_pred hhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 355666667777777777777777776666665433
No 274
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=64.73 E-value=86 Score=27.43 Aligned_cols=75 Identities=23% Similarity=0.202 Sum_probs=46.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (334)
|.+|-.....|-++|+-=.+.|..|++.+...|..|. +-.+.-..|-.+++.+.+.+.+++.=.+.+++
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le-----------~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~ 90 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALE-----------RDYEYLQELEKNAKALEREREEEEKKAHPVLQ 90 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 3444445556666666666777888888887777665 22233345666777777777776655466666
Q ss_pred hccccc
Q 019884 125 SLKDDE 130 (334)
Q Consensus 125 SLqeD~ 130 (334)
-...+.
T Consensus 91 ~~~~~~ 96 (160)
T PF13094_consen 91 LDDSGV 96 (160)
T ss_pred cccccc
Confidence 554433
No 275
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=64.59 E-value=11 Score=35.77 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=22.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r 72 (334)
..|+..||.-+..|=.+|+|||..|.-||.|
T Consensus 135 ~~K~qemE~RIK~LhaqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 135 NRKCQEMENRIKALHAQIAEKDAMIKVLQQR 165 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777777777777777777777755
No 276
>PRK04406 hypothetical protein; Provisional
Probab=64.55 E-value=50 Score=26.39 Aligned_cols=42 Identities=10% Similarity=0.145 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 64 ~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
..|.+|+.|++-.|..+. ...+...+.+++.+.|...++.|.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe----~LN~~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 11 ERINDLECQLAFQEQTIE----ELNDALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666665555443 333333444455555655555553
No 277
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=64.49 E-value=61 Score=34.20 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRD 111 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (334)
...++...+.++...+...+..|..+
T Consensus 387 el~e~leeie~eq~ei~e~l~~Lrk~ 412 (569)
T PRK04778 387 EILKQLEEIEKEQEKLSEMLQGLRKD 412 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 278
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=64.44 E-value=68 Score=33.45 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 30 LdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
|.--|+..-.-=..--++.|.=++.||..+.+..++..+||.+-..+|..|+
T Consensus 265 l~siRr~Cd~lP~~m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~ 316 (442)
T PF06637_consen 265 LESIRRTCDHLPKIMTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQ 316 (442)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4444554444334445566777899999999999999999999999999987
No 279
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=64.36 E-value=45 Score=31.98 Aligned_cols=70 Identities=27% Similarity=0.317 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019884 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (334)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lm 123 (334)
+..+-.+|.+..+++.+|..+-.+|+..+. +|++...+|..-.-.++.-|.--.+...+||+ |+++++.+
T Consensus 120 ~~~l~srl~~~~~~~e~l~~~~~~L~~~~~el~~rik~~ied~~~~~~~~~vl~~l~~n~~~~v~--E~~r~~~~ 192 (217)
T COG1777 120 ISELISRLLEINREIEELSRAQTELQKQLNELMDRIKEEIEDKDGDMTERIVLEYLLKNGAADVE--ETSRRTVL 192 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhHHH--HHHhccch
Confidence 455666677778888888877777777776 88888888888877888888888888888877 55665544
No 280
>smart00338 BRLZ basic region leucin zipper.
Probab=64.20 E-value=53 Score=24.60 Aligned_cols=38 Identities=29% Similarity=0.443 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (334)
Q Consensus 61 EKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa 102 (334)
-|...+.+|+.++..|+.+-. ....+...|..|+..|-
T Consensus 23 rKk~~~~~Le~~~~~L~~en~----~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENE----RLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 456678888888887776554 33344444444444443
No 281
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=64.08 E-value=59 Score=25.91 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
+..--..+..+|..|.+|+.++-.++..+.
T Consensus 25 l~~~~~ei~~~d~~le~l~~q~~k~~~~~~ 54 (80)
T PF11488_consen 25 LESRFKEIDSKDKELEELYQQDCKTEMEVK 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666888888888888887775554
No 282
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=64.05 E-value=93 Score=26.63 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=14.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~ 73 (334)
.++...+..+..+|..|..-.....+.|.+|
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~Y 47 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKY 47 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555544444444444443
No 283
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=64.04 E-value=16 Score=36.87 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 90 DKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
+..+|...-.+++-+|.-|++-|..||
T Consensus 127 dvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 127 DVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 334555555555555555555555554
No 284
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=64.02 E-value=1.5e+02 Score=33.05 Aligned_cols=112 Identities=24% Similarity=0.286 Sum_probs=65.9
Q ss_pred ChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhH-HHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHHH----
Q 019884 14 LPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLE-SEHSALR-S-------QLAEKDSRIAELQSQIESIYSSL---- 80 (334)
Q Consensus 14 Lp~eilavLPsDPyEQLdlArkIts~A~atRVs~LE-~E~~~LR-~-------~laEKd~~i~~Lq~r~~~le~~L---- 80 (334)
++=|.+.-+|..-..=|++..+---..+..|+-.+. .|...+| . ++.+.+.++.+|+.++.....-+
T Consensus 378 ~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~ 457 (698)
T KOG0978|consen 378 LRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEME 457 (698)
T ss_pred HHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554444445444444455555555554 4445555 1 22233556666666554443111
Q ss_pred ---------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 019884 81 ---------S-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (334)
Q Consensus 81 ---------~-------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqS 125 (334)
| --|..+.|.|-+|-.|+...-..+|-|..+..+|+.-..+|-.+
T Consensus 458 t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~ 518 (698)
T KOG0978|consen 458 TIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS 518 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23446677788888888888888888888888888777776544
No 285
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=64.00 E-value=30 Score=33.43 Aligned_cols=93 Identities=23% Similarity=0.225 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS-SLS---DKLGQAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~-~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
+.........+..+-.....++.-...|+....+.++|-+.+=+ ... .+..+...+..-|.+||+.|...|.-|.+
T Consensus 164 ~~~~s~~~~~~~~~~~K~~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 164 KPKSSGAKLKPQSTARKKSKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred CCCCcccccCCccchhhhccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455555555667777776666543221 111 33344555667899999999999999999
Q ss_pred hHHHHHHHHHHHHhhcc
Q 019884 111 DVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 111 DvaKLE~FKk~LmqSLq 127 (334)
.+++|..++.+.++-..
T Consensus 244 el~~~~~~~~~~~~~~~ 260 (269)
T KOG3119|consen 244 ELATLRRLFLQLPKPGG 260 (269)
T ss_pred HHHHHHHHHHhhccccC
Confidence 99999888888776543
No 286
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=63.70 E-value=81 Score=25.83 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 91 KERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
..+|..+++.|+....+.---..|||.--+-+
T Consensus 41 i~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Ev 72 (89)
T PF13747_consen 41 IQRLDADRSRLAQELDQAEARANRLEEANREV 72 (89)
T ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444444444444333344444443333
No 287
>PRK12704 phosphodiesterase; Provisional
Probab=63.66 E-value=2e+02 Score=30.56 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=4.5
Q ss_pred HHHHHHHHh
Q 019884 271 KEFFRQVRN 279 (334)
Q Consensus 271 KEFFRQARs 279 (334)
-|....++.
T Consensus 285 ee~~~~~~~ 293 (520)
T PRK12704 285 EEMVEKARK 293 (520)
T ss_pred HHHHHHHHH
Confidence 355555543
No 288
>PRK10807 paraquat-inducible protein B; Provisional
Probab=63.60 E-value=1.4e+02 Score=31.78 Aligned_cols=94 Identities=15% Similarity=0.273 Sum_probs=47.1
Q ss_pred hcCCCChhhhHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 019884 20 QVLPSDPFEQLDVARKITSIAISTRVSDL--ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------DKLGQAQA 89 (334)
Q Consensus 20 avLPsDPyEQLdlArkIts~A~atRVs~L--E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~--------~rL~~a~~ 89 (334)
-|||+.|=.==+|..+|.. +..++.+| |.=+..|..-|.+=++.+..|+..+..++..+. ..|..+++
T Consensus 406 pvIPt~ps~l~~l~~~~~~--il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~ 483 (547)
T PRK10807 406 PIIPTVSGGLAQIQQKLME--ALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLR 483 (547)
T ss_pred ceeecCCCCHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 6888877542233444433 23333333 333445555555556666666655554443322 33445555
Q ss_pred HHHHHHHH-------HHHHHHHHHHHhhhHHHH
Q 019884 90 DKERLSKE-------NEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 90 e~~kL~kE-------~~sLa~TvKKL~RDvaKL 115 (334)
+.+++.++ ...|.+|++.|+|=+.-|
T Consensus 484 ~l~~~l~~~~~~s~~~~~l~~tl~~l~~~~r~l 516 (547)
T PRK10807 484 ELNRSMQGFQPGSPAYNKMVADMQRLDQVLREL 516 (547)
T ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 55555544 334455555555555555
No 289
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=63.59 E-value=44 Score=28.38 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=35.8
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 71 SQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 71 ~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
+++..+|.++. +.+....+....|.+||..|..--.+|.+-|.+++.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555554 555577888899999999999999899888888876
No 290
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=63.42 E-value=16 Score=36.66 Aligned_cols=69 Identities=19% Similarity=0.407 Sum_probs=11.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
+..++..|..|+..|+....|.-..|..+..+...++..|..|+..++++...|.+.-..+..+++.+.
T Consensus 103 l~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~ 171 (370)
T PF02994_consen 103 LKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELE 171 (370)
T ss_dssp ---------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 456777788888888876655555554444444333333333333444444344333333333333333
No 291
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=63.33 E-value=73 Score=25.19 Aligned_cols=80 Identities=24% Similarity=0.285 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
|.++|++-=|--|=-=..+|++-+.+=.+.+..+++++..+-.+.. .......++.+.-.+.-+.+...|+.+..-|
T Consensus 5 I~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v 84 (90)
T PF06103_consen 5 IAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESV 84 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444444444444344455566666666666666666665555544 3333444444444444555555555555544
Q ss_pred HHH
Q 019884 113 SKL 115 (334)
Q Consensus 113 aKL 115 (334)
..|
T Consensus 85 ~~l 87 (90)
T PF06103_consen 85 SEL 87 (90)
T ss_pred HHH
Confidence 444
No 292
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=63.26 E-value=76 Score=36.19 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=11.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 019884 270 GKEFFRQVRNRLSYEQFAIFLANVKELNAH 299 (334)
Q Consensus 270 GKEFFRQARsRLSYEQFsaFLANIKELNAh 299 (334)
+|+|-|.| -+|+...+.=|+-
T Consensus 691 ~k~~~~~a---------~~~~~~l~~~~al 711 (980)
T KOG0980|consen 691 CKKCGREA---------LAFLVSLSSENAL 711 (980)
T ss_pred HHHHHHHH---------HHHHHHHhhhhHH
Confidence 56666654 3566666655543
No 293
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=63.07 E-value=1.6e+02 Score=30.28 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 019884 29 QLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 29 QLdlArkIts~A~atRVs~LE~E~~~LR~~la--EKd~~i~~Lq~r~~~le~~L~ 81 (334)
+||-...=...|+..++...+..+..|+..|. .-...+...+.++..+...|.
T Consensus 263 rLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL~ 317 (432)
T TIGR00237 263 RLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQ 317 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 55655556667888888888888887777664 222344444555555544443
No 294
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=62.99 E-value=43 Score=34.96 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=15.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEK 62 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEK 62 (334)
+++.++..++.|+..||.+|.+-
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777664
No 295
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=62.87 E-value=28 Score=36.71 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 019884 65 RIAELQSQIESIYSSL 80 (334)
Q Consensus 65 ~i~~Lq~r~~~le~~L 80 (334)
.+.+-|.+.++||..|
T Consensus 70 ALteqQ~kasELEKqL 85 (475)
T PRK13729 70 ATTEMQVTAAQMQKQY 85 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555444
No 296
>PRK04325 hypothetical protein; Provisional
Probab=62.68 E-value=50 Score=26.16 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
|.+|+.|++-.|..+. ...+...+.+++-+.|...++.|
T Consensus 11 i~~LE~klAfQE~tIe----~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 11 ITELEIQLAFQEDLID----GLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544443332 23333333344444444444444
No 297
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.68 E-value=40 Score=32.89 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 019884 92 ERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~ 109 (334)
++|+.|...|.+.++...
T Consensus 67 ~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 67 NTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 298
>PF13864 Enkurin: Calmodulin-binding
Probab=62.24 E-value=18 Score=29.60 Aligned_cols=56 Identities=21% Similarity=0.378 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 60 aEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
.|+..++..|+.+...|..+|+ +|-... |-....+-+..|-..++-|-.|+.+|+.
T Consensus 40 eER~~lL~~Lk~~~~el~~ey~-~lp~~~-DT~~~~~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 40 EERQELLEGLKKNWDELNKEYQ-KLPFSI-DTLRKKRRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCccc-CCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4788899999999999999998 444442 2444445555666666666667666653
No 299
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=62.22 E-value=58 Score=37.63 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
+-.|+..|+++|.+..+..+++++++.+.+..+. ...+-..++.+++..|...++.|.-.+++.
T Consensus 147 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (1123)
T PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELV----ALEGLAAELEEKQQELEAQLEQLQEKAAET 210 (1123)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566655555555555555555444443 222222233334444444444444444333
No 300
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=62.21 E-value=35 Score=28.61 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
+..++.+.+.+|++.|.+.-..|.++|..|
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444445555555555555555555444
No 301
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=62.07 E-value=1.3e+02 Score=27.66 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHhhc
Q 019884 89 ADKERLSKENEALTNTVRKLQRDVSK-LEVFRKTLVQSL 126 (334)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaK-LE~FKk~LmqSL 126 (334)
.+...|+.||..|-.+++.-+.=+.. +..||++..+=+
T Consensus 70 ~qi~~Lq~EN~eL~~~leEhq~alelIM~KyReq~~~l~ 108 (181)
T PF05769_consen 70 RQIRQLQQENRELRQSLEEHQSALELIMSKYREQMSQLM 108 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588999999999999998888876 466776654443
No 302
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=61.81 E-value=94 Score=29.35 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 49 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-------~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
|.|+..|+.+..++...+.++..=+..+|..++ ..-..+..+..++.+||+.+..-+..+.+
T Consensus 22 E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~ 90 (207)
T PF05010_consen 22 EEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEK 90 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 445555555555555544444444444444433 12223344445666666666555544444
No 303
>PRK00736 hypothetical protein; Provisional
Probab=61.57 E-value=59 Score=25.38 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 019884 66 IAELQSQIESIYSSL 80 (334)
Q Consensus 66 i~~Lq~r~~~le~~L 80 (334)
|.+|+.|++-.|..+
T Consensus 7 i~~LE~klafqe~ti 21 (68)
T PRK00736 7 LTELEIRVAEQEKTI 21 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666655555433
No 304
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=61.55 E-value=2.2e+02 Score=30.13 Aligned_cols=7 Identities=14% Similarity=0.340 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 019884 272 EFFRQVR 278 (334)
Q Consensus 272 EFFRQAR 278 (334)
|.+..||
T Consensus 280 e~~~~~~ 286 (514)
T TIGR03319 280 EMVEKAT 286 (514)
T ss_pred HHHHHHH
Confidence 4444444
No 305
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=61.40 E-value=33 Score=31.54 Aligned_cols=30 Identities=33% Similarity=0.580 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
....||.+|.+|+..|...++.|...+.+|
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554
No 306
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=61.25 E-value=35 Score=33.17 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~--~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
+|..|++-.-=+-.+|.|+-.+|+.+...-- .+++...||.+||.+|+..--..++.|.
T Consensus 38 ~v~~l~~ae~WR~~ii~EIs~kv~~Iqd~~L~E~~IRdLNDeINkL~rEK~~WE~rI~~LG 98 (255)
T PF06246_consen 38 EVKSLPEAEKWRRQIIKEISRKVTRIQDPSLGEFQIRDLNDEINKLIREKRHWERRIKELG 98 (255)
T ss_dssp T---HHHHHHHHHHHHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444444455677888888887765544 8889999999999999999999999886
No 307
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=60.98 E-value=49 Score=28.43 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 69 LQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 69 Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
|=+++.++|.++. ..|....+....|.+||..|..--.+|.+-+++++
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345555555554 45556777788888888888888888887777663
No 308
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=60.95 E-value=1e+02 Score=31.34 Aligned_cols=89 Identities=19% Similarity=0.317 Sum_probs=44.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHH------HHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLS--DKLGQAQADKE---RLSK------ENEALTNTV 105 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd-----~~i~~Lq~r~~~le~~L~--~rL~~a~~e~~---kL~k------E~~sLa~Tv 105 (334)
..++..++.+...|...+.+-+ ....++-+++..|+..+. .++....++.. .|.+ -..-+...+
T Consensus 5 ~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~e~D~~~~~~~~~e~ 84 (359)
T PRK00591 5 LDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMAKEEL 84 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4456666666666666554321 222233333444443333 23333322222 2221 122344567
Q ss_pred HHHhhhHHHHHH-HHHHHHhhccccc
Q 019884 106 RKLQRDVSKLEV-FRKTLVQSLKDDE 130 (334)
Q Consensus 106 KKL~RDvaKLE~-FKk~LmqSLqeD~ 130 (334)
.+|..+|.+||. ++..||-+-..|.
T Consensus 85 ~~l~~~l~~~e~~l~~~ll~~~~~D~ 110 (359)
T PRK00591 85 KELEERLEELEEELKILLLPKDPNDD 110 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 889999999986 6666666544443
No 309
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=60.93 E-value=1.1e+02 Score=31.70 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F 118 (334)
.++..+..+..+|..+...|..-+.+|.+.+++|..-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 174 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALLTG 174 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4555555666666666666666666666666666543
No 310
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=60.92 E-value=95 Score=33.57 Aligned_cols=87 Identities=20% Similarity=0.327 Sum_probs=44.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADK-ERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~--~rL~~a~~e~-~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
+.+.+..++.|+..|+..+.+-...+.+.+.....+|.++. .|+...+.+. +++.+=..-+.....||.-=-.+.|.
T Consensus 340 l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~ 419 (594)
T PF05667_consen 340 LESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEK 419 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666 4443333322 22222222222233333333344555
Q ss_pred HHHHHHhhcc
Q 019884 118 FRKTLVQSLK 127 (334)
Q Consensus 118 FKk~LmqSLq 127 (334)
.|+-|+.-+.
T Consensus 420 ~R~pL~~e~r 429 (594)
T PF05667_consen 420 HRAPLIEEYR 429 (594)
T ss_pred HHhHHHHHHH
Confidence 5555554443
No 311
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.72 E-value=1.9e+02 Score=32.75 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=13.0
Q ss_pred cCCCChhhhHHHHHHHHHHHHHHhhhhhHHHH
Q 019884 21 VLPSDPFEQLDVARKITSIAISTRVSDLESEH 52 (334)
Q Consensus 21 vLPsDPyEQLdlArkIts~A~atRVs~LE~E~ 52 (334)
++-+|-|.++.-.-+=-.-.+..++..|+.++
T Consensus 172 l~g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (1042)
T TIGR00618 172 LFPLDQYTQLALMEFAKKKSLHGKAELLTLRS 203 (1042)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555543333322333334444444443
No 312
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.62 E-value=39 Score=24.66 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRD 111 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (334)
....++..|.+||+.|.+.|..|..-
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567778888888888888877643
No 313
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=60.58 E-value=82 Score=32.10 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019884 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (334)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (334)
|..+.++|...+.+|+.=.+.|...|+.
T Consensus 380 l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 380 LKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444433444444433
No 314
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=60.50 E-value=32 Score=38.36 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=38.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEAL 101 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~--~rL~~a~~e~~kL~kE~~sL 101 (334)
.++.+||.+++.=++.+-.-.+..+.||++++.+|..|+ .|+..+.+-+.+|++.++.|
T Consensus 91 d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al 151 (916)
T KOG0249|consen 91 DLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAAL 151 (916)
T ss_pred cchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHH
Confidence 355667777766666666666777888899998888888 55444444444454444443
No 315
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=60.34 E-value=59 Score=37.04 Aligned_cols=73 Identities=12% Similarity=0.224 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~----------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
-+|-+++..||..|.|-.+....+-++...||..-. .++...+++...|..+-..+..++.-|.--+..|
T Consensus 326 mkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~ 405 (1265)
T KOG0976|consen 326 MKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRL 405 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455678888888888877777766666666664432 4444555555555555444444444443333333
Q ss_pred HHH
Q 019884 116 EVF 118 (334)
Q Consensus 116 E~F 118 (334)
|..
T Consensus 406 e~~ 408 (1265)
T KOG0976|consen 406 EQG 408 (1265)
T ss_pred hhc
Confidence 333
No 316
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.33 E-value=95 Score=30.57 Aligned_cols=59 Identities=27% Similarity=0.400 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR 106 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvK 106 (334)
-++++..+-....+=...|..|..+|..+..... .+......+..+|.+|-+.|-+.++
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333333333333333222 2222444444444444444444443
No 317
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.25 E-value=64 Score=37.79 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=18.4
Q ss_pred cCCCChhhhHHHHHH-----HHHHHHHHhhhhhHHHHHHHHHHH
Q 019884 21 VLPSDPFEQLDVARK-----ITSIAISTRVSDLESEHSALRSQL 59 (334)
Q Consensus 21 vLPsDPyEQLdlArk-----Its~A~atRVs~LE~E~~~LR~~l 59 (334)
|.+-+|.+==++.+. +-.+++..++..||..++.||...
T Consensus 772 ~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~ 815 (1293)
T KOG0996|consen 772 VTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERI 815 (1293)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666554344332 223344444444555555554443
No 318
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=60.16 E-value=1.7e+02 Score=32.45 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 30 LdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
++-|++|.. ....++..|=.++...|.++.++.+.+..+++.+..+...|
T Consensus 499 i~~A~~~~~-~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l 548 (771)
T TIGR01069 499 IEQAKTFYG-EFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKEL 548 (771)
T ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777654 24445554444444444444444444444444443333333
No 319
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=60.11 E-value=22 Score=35.12 Aligned_cols=58 Identities=24% Similarity=0.414 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019884 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKE-NEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 65 ~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE-~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (334)
...+|++|-..|+.++. +.+.+++++.+| +.+.+.+...|.+ ++..||.-|+.||||=
T Consensus 5 ~L~eL~qrk~~Lq~eIe----~LerR~~ri~~EmrtsFaG~Sq~lA~---RVqGFkdYLvGsLQDL 63 (283)
T PF11285_consen 5 ALKELEQRKQALQIEIE----QLERRRERIEKEMRTSFAGQSQDLAI---RVQGFKDYLVGSLQDL 63 (283)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccccchHHHHH---HHhhhHHHHHHHHHHH
Confidence 45567777666666554 666677777777 3456666666665 4578999999999985
No 320
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=59.98 E-value=2.9 Score=44.88 Aligned_cols=89 Identities=18% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQR----- 110 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~------~rL~~a~~e~~kL~kE~~sLa~TvKKL~R----- 110 (334)
+.+...|-+++.+||+.+.+++....+++.++..++..+. .-|...-++...|..|-|.|-..+.|+.|
T Consensus 238 ~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~v 317 (713)
T PF05622_consen 238 SVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEV 317 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888888888888888888887764 22333334455566666665443333333
Q ss_pred -----hHHHHHHHHHHHHhhcccccC
Q 019884 111 -----DVSKLEVFRKTLVQSLKDDED 131 (334)
Q Consensus 111 -----DvaKLE~FKk~LmqSLqeD~~ 131 (334)
-+.-++-||+.+ +.|.+++.
T Consensus 318 e~YKkKLed~~~lk~qv-k~Lee~N~ 342 (713)
T PF05622_consen 318 EKYKKKLEDLEDLKRQV-KELEEDNA 342 (713)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333344455554 77777764
No 321
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=59.88 E-value=1.9e+02 Score=28.71 Aligned_cols=28 Identities=14% Similarity=0.364 Sum_probs=24.2
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcccccCC
Q 019884 105 VRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (334)
Q Consensus 105 vKKL~RDvaKLE~FKk~LmqSLqeD~~~ 132 (334)
++.|.+-+.|++.||+.||..|.+.=++
T Consensus 156 ~~el~~K~~~~k~~~e~Ll~~LgeFLee 183 (268)
T PF11802_consen 156 FQELKTKIEKIKEYKEKLLSFLGEFLEE 183 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888899999999999999988654
No 322
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=59.87 E-value=1.1e+02 Score=30.22 Aligned_cols=67 Identities=15% Similarity=0.292 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (334)
-|-+.+..|++..-+.-.+.+++..+...=.+++..+....+..+.|..+-.+|...++|-..++.+
T Consensus 142 kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER 208 (267)
T PF10234_consen 142 KEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELER 208 (267)
T ss_pred chHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777666666666666555555555666688888888899999998888887777665
No 323
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=59.64 E-value=24 Score=36.80 Aligned_cols=72 Identities=29% Similarity=0.406 Sum_probs=53.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 37 TSIAISTRVSDLESEHSALRSQLAEKD--SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~laEKd--~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
....+..|+..-|.|+.+||.+|..|. ..-.||+.|+..|-..|. +-....+.|..||++|.-...+|.+.+
T Consensus 356 ~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li----~KQ~~lE~l~~ek~al~lqlErl~~~l 429 (511)
T PF09787_consen 356 QKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLI----QKQTQLESLGSEKNALRLQLERLETQL 429 (511)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHH----HHHHHHHHHHhhhhhccccHHHHHHHH
Confidence 445667778888899999999888776 334578888877776666 556666789999999988877776544
No 324
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=59.32 E-value=1.5e+02 Score=31.54 Aligned_cols=10 Identities=60% Similarity=0.677 Sum_probs=4.5
Q ss_pred hhHHHHHHHH
Q 019884 47 DLESEHSALR 56 (334)
Q Consensus 47 ~LE~E~~~LR 56 (334)
.|=+|++.||
T Consensus 389 slaaEiSalr 398 (488)
T PF06548_consen 389 SLAAEISALR 398 (488)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 325
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=59.06 E-value=30 Score=35.85 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019884 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (334)
Q Consensus 99 ~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (334)
++++..+|+|+.+|.-||.+-|+|.--|-|
T Consensus 245 ~~~~~~i~~lq~EV~~LEeLsrqLFLE~~e 274 (462)
T KOG2417|consen 245 NTLSSDIKLLQQEVEPLEELSRQLFLELVE 274 (462)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999998755443
No 326
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=59.01 E-value=3.1 Score=46.01 Aligned_cols=91 Identities=26% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------DKLGQAQADKERLSKENEALTNTVRK 107 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-----------~rL~~a~~e~~kL~kE~~sLa~TvKK 107 (334)
.++..++..||.|+..||.++.|-.....+|+.+++.+...|. .|.....+-.-+|..+-..|-..+..
T Consensus 260 ~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~ 339 (859)
T PF01576_consen 260 QALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEE 339 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999888899999999998888887 23334455567788888888888888
Q ss_pred HhhhHHHHHHHHHHHHhhcccc
Q 019884 108 LQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 108 L~RDvaKLE~FKk~LmqSLqeD 129 (334)
++.-+++||.=|+.|..=+.|=
T Consensus 340 ~~~~~~~LeK~k~rL~~EleDl 361 (859)
T PF01576_consen 340 ANAKVSSLEKTKKRLQGELEDL 361 (859)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889988888876555443
No 327
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=58.81 E-value=92 Score=24.83 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=20.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
..-.|..+-...+.....|+..+..-.+..+.|.++|..|...+
T Consensus 15 Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv 58 (70)
T PF04899_consen 15 LQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQV 58 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555554444444444444444444433
No 328
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=58.46 E-value=46 Score=29.84 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=41.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE 97 (334)
|-.+|....+-|+.|..-|..|+.||+|+++.+.+|..|-....+-..++.++
T Consensus 3 ve~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~ea 55 (136)
T PF11570_consen 3 VEVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEA 55 (136)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44566777788999999999999999999999999986666555555555553
No 329
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=58.31 E-value=99 Score=32.53 Aligned_cols=70 Identities=16% Similarity=0.278 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F 118 (334)
|..++.|..++-+.+...+..|..+-.++++.+.+..+|-....+.-.+|+. |-..--.|.+.|+.||..
T Consensus 212 ~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~----lEt~q~~leqeva~le~y 281 (499)
T COG4372 212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQR----LETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
No 330
>PRK00846 hypothetical protein; Provisional
Probab=58.02 E-value=58 Score=26.47 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019884 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (334)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (334)
|..+|-+.++.+++|..=-+.|..-|.+-.
T Consensus 32 LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 32 LSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555555555555544
No 331
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.93 E-value=68 Score=35.08 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKENEALTN 103 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-----------------~rL~~a~~e~~kL~kE~~sLa~ 103 (334)
|-.||-.||.|...||+.|+++.....-|...++.+-..=+ -|=...+.|-..|-+||=+|..
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK 184 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK 184 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred HHHHHhhhHHHHHHHH
Q 019884 104 TVRKLQRDVSKLEVFR 119 (334)
Q Consensus 104 TvKKL~RDvaKLE~FK 119 (334)
+|-.|...---.|.+|
T Consensus 185 qVs~LR~sQVEyEglk 200 (772)
T KOG0999|consen 185 QVSNLRQSQVEYEGLK 200 (772)
T ss_pred HHHHHhhhhhhhhHHH
No 332
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=57.90 E-value=57 Score=32.13 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q 019884 115 LEVFRKTL 122 (334)
Q Consensus 115 LE~FKk~L 122 (334)
...|++.|
T Consensus 86 ~~~~~~~~ 93 (378)
T TIGR01554 86 VRAFIKGV 93 (378)
T ss_pred HHHHHHHh
Confidence 34565544
No 333
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=57.78 E-value=53 Score=28.11 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (334)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~T 104 (334)
...|+.+|.+|+..|..++..+.+|..--+ +..-+.+.|+.|-+...+.
T Consensus 28 ~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~----QL~kRV~~LQ~El~~~~~~ 76 (102)
T PF10205_consen 28 NAELKEQLKEKEQALRKLEQENDSLTFRNQ----QLTKRVEVLQEELEESEQK 76 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcc
Confidence 344555555555555555555555554333 4444444555554444333
No 334
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=57.78 E-value=1.7e+02 Score=27.62 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=45.7
Q ss_pred ChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 25 DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
-+.-.+.++.+.....+..-+........++.+.+.+++..+..+++....|+..+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r 195 (247)
T PF14661_consen 139 ASALRLAEAFRLKPQDLHELLARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYR 195 (247)
T ss_pred chhhhhhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578888888888888888888888899999999999998888877776665554
No 335
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=57.71 E-value=84 Score=34.38 Aligned_cols=77 Identities=27% Similarity=0.327 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--Hhh
Q 019884 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL--VQS 125 (334)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L--mqS 125 (334)
++..+-..|.-||++|+.|-.-|..++.+|+ ..........++..+.++.-..++|+.-..-+--|..|+-| ++.
T Consensus 279 ~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 279 DIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKA 358 (629)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 3566777888899999999999999999998 44444555555555555555555554433334455666643 455
Q ss_pred cc
Q 019884 126 LK 127 (334)
Q Consensus 126 Lq 127 (334)
+.
T Consensus 359 ie 360 (629)
T KOG0963|consen 359 IE 360 (629)
T ss_pred hh
Confidence 43
No 336
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=57.58 E-value=33 Score=32.38 Aligned_cols=51 Identities=25% Similarity=0.426 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhcccccCC
Q 019884 81 SDKLGQAQADKERLSKENEALTNTVR-KLQRDVSKLEVFRKTLVQSLKDDEDA 132 (334)
Q Consensus 81 ~~rL~~a~~e~~kL~kE~~sLa~TvK-KL~RDvaKLE~FKk~LmqSLqeD~~~ 132 (334)
..||+.++.|+.+|--+...|..-|. +|+--+.-+..+| .++|-||+||.+
T Consensus 22 ~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LK-e~NqkLqedNqE 73 (195)
T PF10226_consen 22 VRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLK-EVNQKLQEDNQE 73 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 37888999999999999999988876 7888888888876 679999999874
No 337
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=57.56 E-value=98 Score=31.55 Aligned_cols=67 Identities=24% Similarity=0.278 Sum_probs=51.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQ-IESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r-~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
+.|-.+||.|..-||.+|-=-.....||..= |+++-..||.+.....+|+.+|+.+++.+++..--+
T Consensus 136 Sere~~l~~e~~~l~~ql~iqt~vNsELK~LlVASvgddLQ~~ve~LtedK~qLa~~~~~~~~nl~~~ 203 (383)
T KOG4074|consen 136 SEREAELERELDLLRKQLNIQTKVNSELKRLLVASVGDDLQGQVEALTEDKVQLAHRVDEYMGNLMVE 203 (383)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5666689999999999998777777777753 456666777777788889999999998887655433
No 338
>PF13166 AAA_13: AAA domain
Probab=57.51 E-value=2.5e+02 Score=29.74 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=13.6
Q ss_pred HHHHHHhhhhhcCCCChhHHHHHHHhhcccCC
Q 019884 303 KEETLRKTDEVFGPENKDLYTIFEGLITRNVH 334 (334)
Q Consensus 303 REETL~KA~eIFG~~NkdLY~~FegLL~R~~~ 334 (334)
.++.+.+.+.+|+ +..+..|-.+++++-|
T Consensus 657 ~~~~~~~~~~~~~---~~~~~~~~r~~n~~SH 685 (712)
T PF13166_consen 657 DDQILEKLDNKFD---KEEFNSLYRLINDESH 685 (712)
T ss_pred HHHHHHHhhcccc---chHHHHHHHHHhhcCC
Confidence 4444444444433 2344555556655443
No 339
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=57.39 E-value=1.6e+02 Score=30.08 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhHHHHHH-HHHHHHhhcccc
Q 019884 99 EALTNTVRKLQRDVSKLEV-FRKTLVQSLKDD 129 (334)
Q Consensus 99 ~sLa~TvKKL~RDvaKLE~-FKk~LmqSLqeD 129 (334)
..+...++.|..+|.+||. ++..||-+=..|
T Consensus 78 ~~a~~e~~~l~~~~~~~e~~l~~~ll~~~~~D 109 (360)
T TIGR00019 78 EMAKEELEELEEKIEELEEQLKVLLLPKDPND 109 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 3445677788888888875 555555543333
No 340
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=57.21 E-value=1.8e+02 Score=27.59 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 49 ESEHSALRSQLAEKDSRIAELQSQIES 75 (334)
Q Consensus 49 E~E~~~LR~~laEKd~~i~~Lq~r~~~ 75 (334)
+-|..+||.+|+|=|..+...++..+.
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 448899999999988888888877775
No 341
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=57.13 E-value=48 Score=33.75 Aligned_cols=34 Identities=12% Similarity=0.327 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019884 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (334)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (334)
.+...+|.+....|...+++|...+..|+..-..
T Consensus 374 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 374 KEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666666666655444333
No 342
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=56.90 E-value=37 Score=37.02 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
-|+-++-.-|..||.++.+.++.|.+++-++.+|.++++.++..++
T Consensus 17 ~t~~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~ 62 (732)
T KOG0614|consen 17 GTARELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIA 62 (732)
T ss_pred cchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455566667788888888888888888777777777776666554
No 343
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.85 E-value=1.5e+02 Score=26.62 Aligned_cols=11 Identities=36% Similarity=0.498 Sum_probs=6.8
Q ss_pred HHHHHHHHHHH
Q 019884 50 SEHSALRSQLA 60 (334)
Q Consensus 50 ~E~~~LR~~la 60 (334)
++++.||..+.
T Consensus 58 a~~~eLr~el~ 68 (177)
T PF07798_consen 58 AAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHH
Confidence 55666666664
No 344
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=56.67 E-value=51 Score=27.06 Aligned_cols=9 Identities=22% Similarity=0.150 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 019884 69 LQSQIESIY 77 (334)
Q Consensus 69 Lq~r~~~le 77 (334)
|+.+...+|
T Consensus 27 Le~qk~E~E 35 (83)
T PF14193_consen 27 LEAQKTEAE 35 (83)
T ss_pred HHHHHHHHH
Confidence 333333333
No 345
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=56.63 E-value=60 Score=32.44 Aligned_cols=64 Identities=23% Similarity=0.411 Sum_probs=39.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DK---------LGQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-~r---------L~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
.+|..||..+.+|+..-..|. =++.+||++|+ .| .....-||..|.+..++|..+..||..|+
T Consensus 18 qKIqelE~QldkLkKE~qQrQ-------fQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdl 90 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQ-------FQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDL 90 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHH
Confidence 467889999988875444332 24667777777 22 22233345556666666677777777776
Q ss_pred H
Q 019884 113 S 113 (334)
Q Consensus 113 a 113 (334)
.
T Consensus 91 q 91 (307)
T PF10481_consen 91 Q 91 (307)
T ss_pred h
Confidence 4
No 346
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=56.50 E-value=1e+02 Score=36.27 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 131 (334)
+..++...|.++..+|.++.+.++.++.|++-.||..+..+++-+.
T Consensus 620 ~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek 665 (1317)
T KOG0612|consen 620 EISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEK 665 (1317)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567788889999999999999999999999999888876655
No 347
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=56.47 E-value=1.7e+02 Score=32.74 Aligned_cols=47 Identities=32% Similarity=0.389 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 019884 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIA-ELQSQIESIYSSLS 81 (334)
Q Consensus 27 yEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~-~Lq~r~~~le~~L~ 81 (334)
-+||.+|++=-.- + .-++..||..|.-..+... +||+||+.+|..|.
T Consensus 541 ~~QL~~Ar~~lqe------s--~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~ 588 (739)
T PF07111_consen 541 EEQLEAARKSLQE------S--TEEAAELRRELTQQQEVYERALQEKVSEVESRLR 588 (739)
T ss_pred HHHHHHHHhhHHH------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777653211 1 2346677777776554444 78888887777666
No 348
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=56.45 E-value=37 Score=30.04 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 77 (334)
.|++++..+|..+...+-.+..|+..+..=|
T Consensus 77 ~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kd 107 (131)
T PF04859_consen 77 RLAAEIQEQQSLIKTYEIVVKKLEAELRAKD 107 (131)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 349
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=56.37 E-value=63 Score=32.91 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 87 AQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 87 a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
-.+|+.||..++..|..-+-+++|-.++.+.
T Consensus 375 h~eEk~kle~~rr~Leee~~~f~~rk~~~~~ 405 (406)
T KOG3859|consen 375 HQEEKKKLEEKRKQLEEEVNAFQRRKTAAEL 405 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578899999999999999999998888764
No 350
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=56.35 E-value=80 Score=32.82 Aligned_cols=93 Identities=18% Similarity=0.273 Sum_probs=69.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019884 38 SIAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQA---QADKERLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~la-EKd~~i~~Lq~r~~~le~~L~~rL~~a---~~e~~kL~kE~~sLa~TvKKL~RDva 113 (334)
.++=.+|+..+=.++..|...+. +.+..|++|+++...+|.++. +|..= .=+..++.++-..+.+++.-|--|..
T Consensus 117 ~~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~-~l~aG~~~~ld~~~~~er~~~i~~la~~L~~DFr 195 (478)
T PF11855_consen 117 FVGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEID-RLEAGDVPVLDDTQARERARQILQLARELPADFR 195 (478)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999887 899999999999999999996 32221 11335677777888889999999998
Q ss_pred HHHHHHHH----HHhhcccccC
Q 019884 114 KLEVFRKT----LVQSLKDDED 131 (334)
Q Consensus 114 KLE~FKk~----LmqSLqeD~~ 131 (334)
+.|.-=|. |-..+.+++.
T Consensus 196 ~V~~~~r~l~r~lr~~i~~~~~ 217 (478)
T PF11855_consen 196 RVEDNFRELDRALRERIIDWDG 217 (478)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 87754444 4444455444
No 351
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.32 E-value=1.5e+02 Score=26.56 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019884 65 RIAELQSQIESIYSSLS 81 (334)
Q Consensus 65 ~i~~Lq~r~~~le~~L~ 81 (334)
..+.++..+++|-.+++
T Consensus 52 ~~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 52 QEYLFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 352
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=56.02 E-value=18 Score=32.87 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 49 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
..|+..|..+|-|....+..++.+|..+-..+.
T Consensus 104 D~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~ 136 (152)
T PF11500_consen 104 DAEAMRLAEKLKEEQEKVAEMERHVTELASQMA 136 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555544444
No 353
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=56.00 E-value=1.7e+02 Score=31.79 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQI 73 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~ 73 (334)
+.=|+.++..|+++|.+-+..+.+.+.+.
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34466667777777777777776666654
No 354
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.78 E-value=91 Score=31.28 Aligned_cols=64 Identities=25% Similarity=0.433 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
+||++...|-.+..+=+..+..|++.+.++-..+. .-+.+|..+-+.|.+|.--|.|++.|||.
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~-------~qq~Els~~L~~l~~~~~~~s~~~~k~es 182 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLA-------TQQSELSRALASLKNTLVQLSRNIEKLES 182 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45666555555555444555555554444433222 22236666666666666677777777664
No 355
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=55.78 E-value=96 Score=24.11 Aligned_cols=69 Identities=22% Similarity=0.352 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKL-GQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL-~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
.+.+++..++.+.+....+..|+..+..+...+.... .....+......-...|...++.+...|..++
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 72 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLE 72 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777777766655444111 12224444444555555555555555555443
No 356
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=55.72 E-value=1.4e+02 Score=26.11 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=31.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADK-ERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~-~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
.....+|+.++..|+.........+..+...+..|+.... +| .++. ..+.+|-+-|-.-+--|..-+.|+
T Consensus 33 ~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-kl---~~E~~~~~q~EldDLL~ll~Dle~K~~ky 103 (136)
T PF04871_consen 33 EQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKE-KL---KEEARKEAQSELDDLLVLLGDLEEKRKKY 103 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHhhhhhHHHHHHHHHhHHHHHHHH
Confidence 3344445555555554444333444455555544443222 22 1122 445555555555554444444444
No 357
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=55.67 E-value=1.2e+02 Score=26.50 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=45.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSR--IAELQSQIESIYSSLSDKLGQAQADK-ERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~--i~~Lq~r~~~le~~L~~rL~~a~~e~-~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
-.=|-.|=.|..++.+..++.+.. ..++...+..|...|. .+.... .++..+++.....+..+.+-+|-||
T Consensus 66 P~tvLALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le----~ae~~~~~~~~~~~~~~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 66 PATVLALLDELERAQQRIAELEQECENEDIALDVQKLRVELE----AAEKRIAAELAEQAEAYEGEIADYAKRIAELE 139 (139)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 344556666666666666666655 6777777777776665 444333 5666777777777777776666664
No 358
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=55.62 E-value=1.4e+02 Score=26.83 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhHHHHHH
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALT--------NTVRKLQRDVSKLEV 117 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~--~rL~~a~~e~~kL~kE~~sLa--------~TvKKL~RDvaKLE~ 117 (334)
=..++..||.+|..==..|..-++|++ ||..+. +.|.....|.+.-.+|=+++- +.+||+-+.| |+
T Consensus 50 ~~~d~~~lr~~L~~YLD~IKm~RAkY~-lENky~L~~tL~~LtkEVn~Wr~ewd~iE~~mFGD~pnSmkkMl~nv---es 125 (132)
T PF09432_consen 50 PSTDTEELRAQLDRYLDDIKMERAKYS-LENKYSLQDTLNQLTKEVNYWRKEWDNIEMLMFGDGPNSMKKMLQNV---ES 125 (132)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH---HH
Confidence 345788999999988888888888876 666655 999999999999999999985 5678886655 55
Q ss_pred HHHHH
Q 019884 118 FRKTL 122 (334)
Q Consensus 118 FKk~L 122 (334)
+|..|
T Consensus 126 lk~~l 130 (132)
T PF09432_consen 126 LKSKL 130 (132)
T ss_pred HHHHh
Confidence 55554
No 359
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=55.59 E-value=40 Score=28.44 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019884 84 LGQAQADKERLSKENEALTNTVRKLQRD 111 (334)
Q Consensus 84 L~~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (334)
+..+.+++.+|.++...+.+.+|+|.++
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 89 LQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3366666667776666666666666554
No 360
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=55.34 E-value=1.1e+02 Score=30.12 Aligned_cols=69 Identities=26% Similarity=0.346 Sum_probs=45.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKE----RLSKENEALTNTVRKLQ 109 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~----kL~kE~~sLa~TvKKL~ 109 (334)
+|..|...|+.|..++-.++..-+.....|+.....+...+. |...+.+..+ -|+++|..|..-.+++.
T Consensus 26 ~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~-k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~ 98 (309)
T PF09728_consen 26 ALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS-KAILAKSKLESLCRELQKQNKKLKEESKRRA 98 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888888887777775 3333333333 34555555554444443
No 361
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=55.33 E-value=1.7e+02 Score=26.91 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 019884 30 LDVARKITSIAISTRVSDLESEHSALRSQLAE-------KDSRIAELQSQIESIYSSLS----------DKLGQAQADKE 92 (334)
Q Consensus 30 LdlArkIts~A~atRVs~LE~E~~~LR~~laE-------Kd~~i~~Lq~r~~~le~~L~----------~rL~~a~~e~~ 92 (334)
++.-..-+---|.+..+++|.|..+|-....| ....++.++.+|...+++|- --+.+|++--+
T Consensus 43 IErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~n 122 (159)
T PF04949_consen 43 IERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFN 122 (159)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444566677778777666443332 34578889999999998886 33567777778
Q ss_pred HHHHHHHHHHHHHHHHhhhHH
Q 019884 93 RLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 93 kL~kE~~sLa~TvKKL~RDva 113 (334)
...+|++.|+...--|--.-+
T Consensus 123 EknkeK~~Lv~~L~eLv~eSE 143 (159)
T PF04949_consen 123 EKNKEKAQLVTRLMELVSESE 143 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 889999999887777655433
No 362
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=55.32 E-value=48 Score=31.78 Aligned_cols=73 Identities=21% Similarity=0.356 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhHHHHHHH
Q 019884 57 SQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSK--------ENEALTNTVRKLQRDVSKLEVF 118 (334)
Q Consensus 57 ~~laEKd~~i~~Lq~r~~~le~~L~----------~rL~~a~~e~~kL~k--------E~~sLa~TvKKL~RDvaKLE~F 118 (334)
..|..+|....-++++|...|.-+- .|.....|....|++ |+=+|...++.+..+|+|++-+
T Consensus 4 ~~~~~rd~q~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDY 83 (219)
T PF06730_consen 4 RELRSRDSQTKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDY 83 (219)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHH
Confidence 3355566666666666665554332 223333333333333 4445666899999999999999
Q ss_pred HHHHHhhcccc
Q 019884 119 RKTLVQSLKDD 129 (334)
Q Consensus 119 Kk~LmqSLqeD 129 (334)
+...++-|..-
T Consensus 84 Rqa~v~RlE~K 94 (219)
T PF06730_consen 84 RQAEVERLEAK 94 (219)
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 363
>PRK04325 hypothetical protein; Provisional
Probab=55.30 E-value=82 Score=24.96 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019884 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (334)
...+++|+..||..+. .-++-. +.|...|-+.++++++|+.=-+.|...|.+-+
T Consensus 4 ~~~~e~Ri~~LE~klA----fQE~tI-------e~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 4 VQEMEDRITELEIQLA----FQEDLI-------DGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred chhHHHHHHHHHHHHH----HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467788888885443 444333 34555666677777777766666666665544
No 364
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=55.19 E-value=78 Score=27.50 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=15.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r 72 (334)
.+..|+...+.++..++..|.+=...+.+|+.+
T Consensus 34 dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~ 66 (141)
T PF13874_consen 34 DLKKRVEAQEEEIAQHRERLKEINDKLEELQKH 66 (141)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888888888888766667777433
No 365
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=55.18 E-value=38 Score=35.19 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=24.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
|-.||.|+.-+.+.-.-.. .+..|+..++.++..+.
T Consensus 324 i~ELe~Ei~~~~~~~~~~~-~l~~L~~~~~~~~~~~~ 359 (448)
T PF05761_consen 324 IPELEQEIEIWNSKKYRFE-ELQELEELLEELQDHLD 359 (448)
T ss_dssp -TTHHHHHHHHHHTHHHHH-HHHHHHHHCHHHHCHHH
T ss_pred ehhhhhhhhhhhhcchhhh-HHHHHHHHHHHHHHHhc
Confidence 5689999988876654333 37778877777776664
No 366
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=54.99 E-value=1.1e+02 Score=33.18 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=62.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH
Q 019884 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------------------------DKLGQAQADKER 93 (334)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~------------------------~rL~~a~~e~~k 93 (334)
-..|+.|+.-+|-|++.|.....-+.+.|+.|+++-..|+.... .||.....|+=-
T Consensus 592 ekG~Aeki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~klLagiKEKwv 671 (790)
T PF07794_consen 592 EKGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSKLLAGIKEKWV 671 (790)
T ss_pred hhhhHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999888777665432 344444444433
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019884 94 LSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (334)
Q Consensus 94 L~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 126 (334)
-.||--.|-.+.-.+.-+++=|.-.-|+-+++-
T Consensus 672 ~KKe~t~le~qAaEvesNlaLidqi~kaaIdlt 704 (790)
T PF07794_consen 672 AKKEYTVLEGQAAEVESNLALIDQITKAAIDLT 704 (790)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666554
No 367
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.98 E-value=1.3e+02 Score=35.10 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=41.3
Q ss_pred ChhhhHHHHHHHHHHHH-----------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 25 DPFEQLDVARKITSIAI-----------STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 25 DPyEQLdlArkIts~A~-----------atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
|=..||++.-+=.++.. -..+..++.++..+.+++-|+++.+..-+++++.+|....
T Consensus 712 ~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~ 779 (1174)
T KOG0933|consen 712 DLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMK 779 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567776655444443 3456778888888888888888888888888888777666
No 368
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=54.58 E-value=1.3e+02 Score=25.11 Aligned_cols=39 Identities=28% Similarity=0.304 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019884 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (334)
+-..-|.+..+.|...+++|+.++++|..--.+++.-|+
T Consensus 86 eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 86 EAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556677788888888899988888877777776554
No 369
>PF05859 Mis12: Mis12 protein; InterPro: IPR008685 Kinetochores are the chromosomal sites for spindle interaction and play a vital role for chromosome segregation. Fission Saccharomyces cerevisiae kinetochore protein Mis12, is required for correct spindle morphogenesis, determining metaphase spindle length []. Thirty-five to sixty percent extension of metaphase spindle length takes place in Mis12 mutants []. It has been shown that Mis12 might genetically interact with Mal2p [].; GO: 0007049 cell cycle, 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=54.46 E-value=10 Score=33.09 Aligned_cols=55 Identities=29% Similarity=0.394 Sum_probs=40.1
Q ss_pred CCCChHHHH--hcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019884 11 TFDLPEEVL--QVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (334)
Q Consensus 11 ~f~Lp~eil--avLPsDPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq 70 (334)
=|.+|.++| .|+.-.+|+=+++.. .-...-..|+.|+..||.+|.+.-.+-+.|+
T Consensus 86 if~IP~~llp~~~~~l~~~~~~~~~~-----~~~~~~~~ld~el~~lr~kL~~~~~~~~~L~ 142 (144)
T PF05859_consen 86 IFSIPEDLLPEDWIRLYHHEGLDFSS-----NQLEEDYELDAELEQLRRKLEEQRKLNAELE 142 (144)
T ss_pred cccCChhhcchhhhcccccccccccc-----ccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478896665 366677777777665 4445567888999999999888777776665
No 370
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=54.29 E-value=1.3e+02 Score=28.13 Aligned_cols=81 Identities=10% Similarity=0.185 Sum_probs=54.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (334)
+|..+|.++..|+.++..=-..+..+- ....++. ..+...+.+-.+...+-+..+.+++|...-|..|+.++.
T Consensus 3 ~i~~~E~d~~~Le~~l~Kl~K~~~~~~----dag~~~~~a~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~ 78 (200)
T cd07638 3 ALEDVEGDVAELELKLDKLVKLCIGMI----DAGKAFCQANKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHT 78 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888754333333222 2222222 344466667666666777888999999999999999988
Q ss_pred HHHhhccc
Q 019884 121 TLVQSLKD 128 (334)
Q Consensus 121 ~LmqSLqe 128 (334)
.|+.-.++
T Consensus 79 ~L~~q~~~ 86 (200)
T cd07638 79 ILFDQAQR 86 (200)
T ss_pred HHHHHHHH
Confidence 87765543
No 371
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.28 E-value=76 Score=36.54 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (334)
.++|-+++|++-|.. +++.|...+++|..-+|-|-+-..
T Consensus 476 alee~~EQL~Esn~e---le~DLreEld~~~g~~kel~~r~~ 514 (1243)
T KOG0971|consen 476 ALEEMNEQLQESNRE---LELDLREELDMAKGARKELQKRVE 514 (1243)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444444444432 456666677777655555544433
No 372
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=54.13 E-value=1.7e+02 Score=36.39 Aligned_cols=103 Identities=19% Similarity=0.299 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIA-------------ELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (334)
Q Consensus 32 lArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~-------------~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~ 98 (334)
+..|-.++.-+.||...--|+..-|..+.||...+. .||.++..+|+.|. ..++....|.+|-
T Consensus 939 ~~qk~~~L~~a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~----aie~kv~~L~~ea 1014 (2473)
T KOG0517|consen 939 VDQKKVALESALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLA----AIEAKVAALEKEA 1014 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHH----HHHHHHHHHHHHH
Confidence 456777888889999999999999999999988887 78999999998887 4444444455554
Q ss_pred HHHH----HHHHHHhhhHHHHHHHHHHHHhhcccccCCCCCccc
Q 019884 99 EALT----NTVRKLQRDVSKLEVFRKTLVQSLKDDEDASTGATR 138 (334)
Q Consensus 99 ~sLa----~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~~~~~~~ 138 (334)
+.+. .....++..++.|+..=..|-+.+++-+...+++.+
T Consensus 1015 ~~v~~~~Paea~~i~~r~~el~~~w~~l~~~~~~~~~~l~ea~~ 1058 (2473)
T KOG0517|consen 1015 NKVEEEHPAEAQAINARIAELQALWEQLQQRLQEREERLEEAGG 1058 (2473)
T ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 356678888899999888888888887765545443
No 373
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=54.12 E-value=1.1e+02 Score=26.16 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=27.6
Q ss_pred HHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 30 LDVARKITSI-AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIES 75 (334)
Q Consensus 30 LdlArkIts~-A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~ 75 (334)
.|+.+=+..+ ++..-...|+.+...++.++..+...+..+++++..
T Consensus 22 Vd~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~ 68 (158)
T PF03938_consen 22 VDVDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQS 68 (158)
T ss_dssp E-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554 445555677777777777777766666666655544
No 374
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=53.87 E-value=1.9e+02 Score=31.36 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHhhcccccC
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQRD-----VSKLEVFRKTLVQSLKDDED 131 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD-----vaKLE~FKk~LmqSLqeD~~ 131 (334)
.||...+.+.+.+.+...+|...+..|.|+ |+.-|-+=+.=-|-|+-+.+
T Consensus 385 ~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~laEae~Ll~lA~q~L~l~~d 439 (656)
T PRK06975 385 SQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMIAEVEQMLSSASQQLQLTGN 439 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHhCC
Confidence 555566666666666666666666655543 34444444444455554444
No 375
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=53.83 E-value=12 Score=36.11 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=19.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH
Q 019884 37 TSIAISTRVSDLESEHSALRSQLA 60 (334)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~la 60 (334)
+.-|-..|++.||.|..+||+|+|
T Consensus 116 ~~~~AlqKIsALEdELs~LRaQIA 139 (253)
T PF05308_consen 116 ANEAALQKISALEDELSRLRAQIA 139 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788999999999999886
No 376
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=53.48 E-value=1.1e+02 Score=32.70 Aligned_cols=65 Identities=22% Similarity=0.342 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019884 63 DSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEA-----------LTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 63 d~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~s-----------La~TvKKL~RDvaKLE~FKk~LmqSLq 127 (334)
...+.++++||..++..=. ..+.++.++-.+|.+|-.+ |.+-.+.+..|++.|+.-.+.=+..|.
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~ 268 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLE 268 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHH
Confidence 3456666777776665311 3444555555555555444 444444455555555555444333333
No 377
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=53.46 E-value=2.1e+02 Score=27.35 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=18.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~ 71 (334)
+..+...++.++..|+.++.+++..+..++.
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665555553
No 378
>PF09302 XLF: XLF (XRCC4-like factor); InterPro: IPR015381 XLF (also called Cernunnos) interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated downregulation of XLF in human cell lines leads to radio-sensitivity and impaired DNA non-homologous end-joining []. XLF is homologous to the yeast non-homologous end-joining factor Nej1 []. ; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z56_A 3RWR_D 3Q4F_A 3SR2_H 2R9A_A 2QM4_C.
Probab=53.22 E-value=18 Score=31.75 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (334)
Q Consensus 31 dlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~ 74 (334)
.+++.+..- +...+..|+.++..|...|.+||..|..|.++++
T Consensus 128 ~~~~~L~~P-ll~~~~~l~~~~~~L~~~l~~KD~~i~~l~~~~~ 170 (171)
T PF09302_consen 128 QFLSHLNSP-LLRMSSALQRQVESLKDLLKEKDKEIEKLRDKLE 170 (171)
T ss_dssp HHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555555544 3455677888899999999999999999998764
No 379
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=53.21 E-value=1.2e+02 Score=35.01 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=48.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (334)
--++...|.++..|+..+..+...+.+|++++......|. .......-|-+|+..|-..+++.++-.+|+|+.+.
T Consensus 628 ~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le----~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~ 702 (1072)
T KOG0979|consen 628 EELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELE----EEQKKLKLLKRERTKLNSELKSYQQRKERIENLVV 702 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3455567778888888888888888888888777666554 33333444455666666666666666666666533
No 380
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=53.09 E-value=57 Score=33.09 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=46.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~ 99 (334)
|++|-..|-.+...|-++..+-.....+|++++.++..-.. .-|....+|.+++.+|-.
T Consensus 264 I~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 264 IASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEME 325 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888888888888888887766655 667788888888877654
No 381
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=53.02 E-value=12 Score=37.60 Aligned_cols=87 Identities=32% Similarity=0.383 Sum_probs=24.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~----------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (334)
.++|+.|++++..|-..+++-...+.+|...|..++..|. ..+.........|+..-+.|.-.|-.|.+|
T Consensus 55 ss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksd 134 (326)
T PF04582_consen 55 SSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSD 134 (326)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhh
Confidence 3445555555555555555544444444444444444443 444445555678888888999999999999
Q ss_pred HHHHHHHHHHHHhhccc
Q 019884 112 VSKLEVFRKTLVQSLKD 128 (334)
Q Consensus 112 vaKLE~FKk~LmqSLqe 128 (334)
|+-+.-==.-|=+.++.
T Consensus 135 VSt~aL~ItdLe~RV~~ 151 (326)
T PF04582_consen 135 VSTQALNITDLESRVKA 151 (326)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhcchHhhHHHHHHH
Confidence 98765444444444444
No 382
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=52.97 E-value=95 Score=23.23 Aligned_cols=31 Identities=26% Similarity=0.520 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
...+....|..||+.|...+..|...+..|+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555553
No 383
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=52.92 E-value=30 Score=33.90 Aligned_cols=41 Identities=10% Similarity=0.312 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHH---HHHHHH-HhhhHHHHHHHHHHHHhhccc
Q 019884 88 QADKERLSKENEAL---TNTVRK-LQRDVSKLEVFRKTLVQSLKD 128 (334)
Q Consensus 88 ~~e~~kL~kE~~sL---a~TvKK-L~RDvaKLE~FKk~LmqSLqe 128 (334)
++||.+.++.-+.| ...+.+ +++-+++|+.+|+.|||-+=-
T Consensus 372 l~EQ~kI~~~l~~l~~~~d~i~~~~~~~l~~L~~lKqslLqk~ft 416 (461)
T PRK09737 372 LEEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKAFR 416 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57777777655554 444444 577899999999999998643
No 384
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=52.89 E-value=1.4e+02 Score=28.35 Aligned_cols=74 Identities=30% Similarity=0.391 Sum_probs=35.9
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019884 51 EHSALRSQLAE-------KDSRIAELQSQIESIYSSLS---DKLG-------QAQADKERLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 51 E~~~LR~~laE-------Kd~~i~~Lq~r~~~le~~L~---~rL~-------~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (334)
||+-|+++|-| |+..|-.|+.++-.+-..+. .++. .-.-+.+...+|-...-+-+.-|...|.
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 45555555433 66666666666655555554 1111 1122334444444444444544555555
Q ss_pred HHH----HHHHHHHh
Q 019884 114 KLE----VFRKTLVQ 124 (334)
Q Consensus 114 KLE----~FKk~Lmq 124 (334)
+|| .+|..|..
T Consensus 91 ~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 91 QLEAELAELREELAC 105 (202)
T ss_pred hhHHHHHHHHHHHHh
Confidence 555 44444443
No 385
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=52.77 E-value=1.3e+02 Score=24.75 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=20.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 76 (334)
+.+.|..+|...+..|+..+.+.+....+|+..+.++
T Consensus 32 ~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~I 68 (99)
T PF10046_consen 32 ATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQI 68 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666555555444444444333
No 386
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=52.60 E-value=53 Score=35.52 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=6.7
Q ss_pred HHHHHHHHHH
Q 019884 284 EQFAIFLANV 293 (334)
Q Consensus 284 EQFsaFLANI 293 (334)
-+|-+|||+|
T Consensus 704 ~siP~FLaal 713 (722)
T PF05557_consen 704 NSIPAFLAAL 713 (722)
T ss_dssp --HHHHHHHH
T ss_pred CChhHHHHHH
Confidence 5788899886
No 387
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=52.59 E-value=3.8e+02 Score=30.08 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=62.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI---YS---SLS-DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l---e~---~L~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
+|-++...--.|++.||++++||+..+.-|++++..- |. .++ .+|+.|+|..+.-.++++....-.+.+-...
T Consensus 228 qye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y 307 (861)
T KOG1899|consen 228 QYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNY 307 (861)
T ss_pred HHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhh
Confidence 4444555555679999999999999999999887642 22 233 7889999999888888888888887777776
Q ss_pred HHHHHHHHHHH
Q 019884 113 SKLEVFRKTLV 123 (334)
Q Consensus 113 aKLE~FKk~Lm 123 (334)
.|..-..+-+|
T Consensus 308 ~k~~~iv~i~q 318 (861)
T KOG1899|consen 308 DKNAQIVRILQ 318 (861)
T ss_pred hhhhhhhhhhc
Confidence 66655555444
No 388
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=52.54 E-value=1.4e+02 Score=29.98 Aligned_cols=65 Identities=15% Similarity=0.392 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
.|..++..+|++-.++.....++.+++-++= ++-....++..+|-.+|+.+-..+-.|..++.+|
T Consensus 31 El~~~~~~~~ekRdeln~kvrE~~e~~~elr----~~rdeineev~elK~kR~ein~kl~eL~~~~~~l 95 (294)
T COG1340 31 ELRKEASELAEKRDELNAKVRELREKAQELR----EERDEINEEVQELKEKRDEINAKLQELRKEYREL 95 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433332 2333555555566666666555555555555544
No 389
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=52.49 E-value=82 Score=30.96 Aligned_cols=26 Identities=8% Similarity=0.155 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRK 107 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKK 107 (334)
..+..+.++..++.+.-++|..-.+.
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~ 194 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEAN 194 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444443443333333
No 390
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=52.40 E-value=2e+02 Score=26.85 Aligned_cols=26 Identities=35% Similarity=0.356 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHH
Q 019884 28 EQLDVARKITSIAISTRVSDLESEHS 53 (334)
Q Consensus 28 EQLdlArkIts~A~atRVs~LE~E~~ 53 (334)
-|||.-||.+..|=.-|-.-||..+.
T Consensus 78 KQLeyMRkmv~~ae~er~~~le~q~~ 103 (178)
T PF14073_consen 78 KQLEYMRKMVESAEKERNAVLEQQVS 103 (178)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 36666666666666666555555444
No 391
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=52.25 E-value=1.6e+02 Score=25.69 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=42.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQ-LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (334)
Q Consensus 26 PyEQLdlArkIts~A~atRVs~LE~E~~~LR~~-laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~T 104 (334)
|-++++=..+-.+-.|..+....|.-|..|=-- ..|.+ -.+++..|+.++. .+.++..+..+|++.|-..
T Consensus 63 ~~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~-----Q~~~i~~L~~E~~----~~~~el~~~v~e~e~ll~~ 133 (144)
T PF11221_consen 63 PPEEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEE-----QLKRIKELEEENE----EAEEELQEAVKEAEELLKQ 133 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHH-----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH-----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 455565566666666666666676666665431 11111 1123444443333 5555555666666777777
Q ss_pred HHHHhhhHH
Q 019884 105 VRKLQRDVS 113 (334)
Q Consensus 105 vKKL~RDva 113 (334)
|..+-++|+
T Consensus 134 v~~~i~~ia 142 (144)
T PF11221_consen 134 VQELIREIA 142 (144)
T ss_dssp HHHHHHTT-
T ss_pred HHHHHHHHh
Confidence 777766665
No 392
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=52.19 E-value=1.6e+02 Score=34.84 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=27.2
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHHhhccccHHHHHHhhh
Q 019884 266 TRVDGKEFFRQVRNRLSYEQFAIFLANVKELNAHKQTKEETLRKTD 311 (334)
Q Consensus 266 ~rVDGKEFFRQARsRLSYEQFsaFLANIKELNAhkQTREETL~KA~ 311 (334)
.+-+++|-+..++++ |...-..+|+++...+-.+| |+++.
T Consensus 617 ~~~~~~e~~~~l~~~-----i~sL~~~~~~~~~~l~k~~e-l~r~~ 656 (1317)
T KOG0612|consen 617 QRTEISEIIAELKEE-----ISSLEETLKAGKKELLKVEE-LKREN 656 (1317)
T ss_pred HHHHHHHHHHHHHhH-----HHHHHHHHHhhhhHHHHHHH-HHHHH
Confidence 566777778888764 45566677777777777777 66553
No 393
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=52.15 E-value=2.9e+02 Score=28.64 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=17.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQ 70 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq 70 (334)
-++..+-+++..+|.+..+-...+..|+
T Consensus 80 ~~~q~~~~q~~~~~~~~~~v~~ek~rl~ 107 (377)
T KOG2896|consen 80 HVEQCLSAQVQSMRVEMKEVSEEKLRLQ 107 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777776666665555
No 394
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=52.14 E-value=4.4e+02 Score=30.65 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (334)
..+..+..+..++.++++....+++++.+.+.+|+.=-..|-.-|.-
T Consensus 490 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p 536 (1201)
T PF12128_consen 490 QAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDP 536 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 33445555566666777777777777777777766655555555543
No 395
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=52.10 E-value=12 Score=33.86 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
.=+-+|+...+..|+.+-.+|+.++.-=-....-|+.+++.....|+ .+.++.++|-.|++-|-..+-++.
T Consensus 7 aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq----~se~~~~~Lpee~~~Lqfl~~~~r 77 (181)
T PF09311_consen 7 AQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQ----ESEQEVAQLPEEVKHLQFLVSIKR 77 (181)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHT----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhhcCcchHHHHHHHHHhcc
Confidence 33445666666666666666666554444444444444443333332 445555555555555544444433
No 396
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=52.08 E-value=2e+02 Score=26.68 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH
Q 019884 90 DKERLSKENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL~RDvaK 114 (334)
++.+|-.+...|...|-.|.|..++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~ 149 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAK 149 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445455544333
No 397
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=51.91 E-value=54 Score=30.75 Aligned_cols=56 Identities=27% Similarity=0.446 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV 105 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~Tv 105 (334)
+..|+..|+.+..+|++.|. |..-+.++- +++ .+|...+.+.+.|..+.+.|.+.|
T Consensus 137 ~~arl~~l~~~~~rl~~ll~-ka~~~~d~l-~ie-------~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 137 LEARLKNLEAEEERLLELLE-KAKTVEDLL-EIE-------RELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHhh
No 398
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=51.80 E-value=2.6e+02 Score=28.22 Aligned_cols=84 Identities=15% Similarity=0.266 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 29 QLDVARKITSIAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (334)
Q Consensus 29 QLdlArkIts~A~atRVs~LE~E~~~LR~~la-EKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKK 107 (334)
=.+.......+|-.-|.. ...||..+. =-...+.+|+.+...-+.+|..|+....+-+.+|..+.......+..
T Consensus 202 W~~~s~~ni~~a~~e~~~-----S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~ 276 (384)
T PF03148_consen 202 WEEFSNENIQRAEKERQS-----SAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAE 276 (384)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344455666666555554 466777776 45566778888888888888888877777777777777766666666
Q ss_pred HhhhHHHHHH
Q 019884 108 LQRDVSKLEV 117 (334)
Q Consensus 108 L~RDvaKLE~ 117 (334)
+.+++..||.
T Consensus 277 ~e~~i~~L~~ 286 (384)
T PF03148_consen 277 MEKNIEDLEK 286 (384)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 399
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.69 E-value=1.3e+02 Score=24.62 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019884 89 ADKERLSKENEALTNTVR 106 (334)
Q Consensus 89 ~e~~kL~kE~~sLa~TvK 106 (334)
.+|++|..|-..-..-++
T Consensus 53 ~eneqlk~e~~~WQerlr 70 (79)
T COG3074 53 RENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445444444433333
No 400
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=51.63 E-value=40 Score=36.61 Aligned_cols=54 Identities=26% Similarity=0.460 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCC
Q 019884 73 IESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDEDAS 133 (334)
Q Consensus 73 ~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~~ 133 (334)
|..||..+. ....|+++|.+||+.+-++++.+...|+-| =+.+.+-|.+++...
T Consensus 513 I~nLE~ev~----~l~~eKeqLl~Er~~~d~~L~~~kqqls~L---~~~Vf~~lrd~eg~~ 566 (604)
T KOG3863|consen 513 ILNLEDEVE----KLQKEKEQLLRERDELDSTLGVMKQQLSEL---YQEVFQQLRDEEGNP 566 (604)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccccCc
Confidence 344444443 667889999999999999998887766654 455566678887653
No 401
>PRK00846 hypothetical protein; Provisional
Probab=51.55 E-value=91 Score=25.36 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=2.8
Q ss_pred HHHHHH
Q 019884 114 KLEVFR 119 (334)
Q Consensus 114 KLE~FK 119 (334)
||+...
T Consensus 56 rL~~~~ 61 (77)
T PRK00846 56 DLGKVR 61 (77)
T ss_pred HHHHhc
Confidence 454444
No 402
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=51.50 E-value=1.6e+02 Score=32.84 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=51.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
++...+++|+.|...+-+.+..=-..+.++...+..|...+- ++|.++......+.-|.+-+....++|.-++.
T Consensus 535 ~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e--- 611 (698)
T KOG0978|consen 535 GLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELE--- 611 (698)
T ss_pred HhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 455667777777777777776666666666666666665555 66667777666666666666666565554443
Q ss_pred HHHHHH
Q 019884 117 VFRKTL 122 (334)
Q Consensus 117 ~FKk~L 122 (334)
.||+.|
T Consensus 612 ~L~~kl 617 (698)
T KOG0978|consen 612 RLKRKL 617 (698)
T ss_pred HHHHHH
Confidence 344444
No 403
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=51.24 E-value=2.8e+02 Score=29.11 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=34.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 019884 37 TSIAISTRVSDLESEHSALRSQLAEK-------DSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~laEK-------d~~i~~Lq~r~~~le~~L~ 81 (334)
++.++.+-|++||.|...++.+|+.- +-.|..|+.++..||.++.
T Consensus 280 ~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa 331 (434)
T PRK15178 280 TITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIG 331 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Confidence 34566777888888888888777744 4468889999999998776
No 404
>PHA03185 UL14 tegument protein; Provisional
Probab=51.23 E-value=95 Score=29.72 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQA 89 (334)
Q Consensus 28 EQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~ 89 (334)
.-+||.++|-|++ ||...|.-++.++..+.|-...-..|...--=|.-.|+.+|-.++|
T Consensus 53 A~~dl~aqLrS~a---Rve~VeQKar~Iq~rVEeQ~a~r~iL~~hRRyL~pdf~e~lD~~ED 111 (214)
T PHA03185 53 AHRELEARLKSRA---RLEMLRQHAACVKIRVEEQAERRDFLIAHRRYLDPALGERLDEAED 111 (214)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 5689999999988 9999999999988888776666555554444444444444444433
No 405
>PRK00295 hypothetical protein; Provisional
Probab=51.23 E-value=76 Score=24.77 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
|.+|+.|++-.|..+. ...+...+.+++.+.|...++.|.+
T Consensus 7 i~~LE~kla~qE~tie----~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 7 VTELESRQAFQDDTIQ----ALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665554443 4444445555566666666666644
No 406
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=51.19 E-value=1.6e+02 Score=25.24 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=21.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIES 75 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~ 75 (334)
..+..|++|+.+++..+.+-...+..+++-+..
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~ 35 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLES 35 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777666666666555443
No 407
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.16 E-value=1.5e+02 Score=30.42 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=50.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (334)
|.+=.++-..+||..+.|+-...-.+|+-+..-+. ......+||..|+..|-.++-+|+.+.+=|.+-++.
T Consensus 208 rasvisa~~eklR~r~eeeme~~~aeq~slkRt~E-------eL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 208 RASVISAVREKLRRRREEEMERLQAEQESLKRTEE-------ELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44445566677777777665555555555554444 334667889999999999999999999888777765
No 408
>PRK00736 hypothetical protein; Provisional
Probab=51.12 E-value=64 Score=25.17 Aligned_cols=10 Identities=0% Similarity=0.116 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 019884 69 LQSQIESIYS 78 (334)
Q Consensus 69 Lq~r~~~le~ 78 (334)
+++|+..||.
T Consensus 3 ~e~Ri~~LE~ 12 (68)
T PRK00736 3 AEERLTELEI 12 (68)
T ss_pred HHHHHHHHHH
Confidence 3445555553
No 409
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.89 E-value=1.4e+02 Score=28.30 Aligned_cols=80 Identities=19% Similarity=0.345 Sum_probs=49.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQ------SQIESIYSSLSDKLGQAQADKERL----SKENEALTNTVRKLQRDV 112 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq------~r~~~le~~L~~rL~~a~~e~~kL----~kE~~sLa~TvKKL~RDv 112 (334)
+.|+.+|.++..|...+.. +|.+.+ +.++..+.++ ...+.|-.+. -.+-.-..++++|...-+
T Consensus 2 ~~l~~~E~d~~~L~~~~~k---L~K~c~~~~~a~~~~~~A~~~F----~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l 74 (215)
T cd07601 2 SLLNVFEEDALQLSSYMNQ---LLQACKRVYDAQNELKSATQAL----SKKLGEYEKQKFELGRDDEILVSTLKQFSKVV 74 (215)
T ss_pred chHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccCCCCCcHHHHHHHHHHHHHH
Confidence 4577788888888877642 333333 2333333333 3555555433 333334446888888888
Q ss_pred HHHHHHHHHHHhhcccc
Q 019884 113 SKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 113 aKLE~FKk~LmqSLqeD 129 (334)
..|++++..|+..+++-
T Consensus 75 ~El~~~~~~L~~q~~~~ 91 (215)
T cd07601 75 DELSTMHSTLSSQLADT 91 (215)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88899988888777653
No 410
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=50.89 E-value=1.2e+02 Score=33.93 Aligned_cols=84 Identities=24% Similarity=0.332 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH----
Q 019884 30 LDVARKITSIAISTRVSDLESEHSAL-------RSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKE---- 92 (334)
Q Consensus 30 LdlArkIts~A~atRVs~LE~E~~~L-------R~~laEKd~~i~~Lq~r~~~le~~L~------~rL~~a~~e~~---- 92 (334)
|-.|..-.-..+.+++..||-.+..| -..|++-.+....|+++++....+|. .+|+.-..++.
T Consensus 156 Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~ 235 (739)
T PF07111_consen 156 LTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEV 235 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCccc
Confidence 34455555566666776666644433 33444434444455555554444433 45554443332
Q ss_pred ---HHHHHHHHHHHHHHHHhhhHH
Q 019884 93 ---RLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 93 ---kL~kE~~sLa~TvKKL~RDva 113 (334)
.-..||..|.+||++|..|=+
T Consensus 236 ~~~~we~Er~~L~~tVq~L~edR~ 259 (739)
T PF07111_consen 236 HSQAWEPEREELLETVQHLQEDRD 259 (739)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 223566666666666666644
No 411
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.83 E-value=97 Score=36.00 Aligned_cols=77 Identities=19% Similarity=0.401 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 53 SALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~----------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
+..+..++.-|.+|.+.++.+++. ..|. .||..+.-+.....+.-+.+..++++|..++.-++.-|..+
T Consensus 265 ~ki~re~~~~Dk~i~~ke~~l~er-p~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~f 343 (1141)
T KOG0018|consen 265 GKIRRELQKVDKKISEKEEKLAER-PELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEF 343 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-hHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666777777777661 1121 78888888888889999999999999999999988888877
Q ss_pred Hhhccccc
Q 019884 123 VQSLKDDE 130 (334)
Q Consensus 123 mqSLqeD~ 130 (334)
+.-+++..
T Consensus 344 ekei~~~~ 351 (1141)
T KOG0018|consen 344 EKEIEERS 351 (1141)
T ss_pred HHHHHHHH
Confidence 76665543
No 412
>KOG2218 consensus ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=50.80 E-value=38 Score=37.55 Aligned_cols=92 Identities=32% Similarity=0.287 Sum_probs=57.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHH---HHHHHHH---HHHHHHHH-----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLA---EKDSRIA---ELQSQIES-----IYSSLSDKLGQA-QADKERLSKENEALTNTVRK 107 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~la---EKd~~i~---~Lq~r~~~-----le~~L~~rL~~a-~~e~~kL~kE~~sLa~TvKK 107 (334)
+...+|+.+|.|+..|-++|+ ++|.... -.-+..++ ..++| ++|.+. ..-..+++.|...+..++-.
T Consensus 29 r~~~~~s~l~~~~seL~q~l~~L~~~~~~n~~~~~s~~~~~q~~~~ev~~~l-e~L~~l~~~~~~~~~~~e~v~~~~~e~ 107 (737)
T KOG2218|consen 29 RASDLVSELEKELSELNQRLQNLKERDPSNLTTYLSAEQGAQQDIEEVGAEL-EKLQRLERALYGDLQLEEQVLKVAKEI 107 (737)
T ss_pred ccccchhhHHHHHHHHHHHHhhhcccCcccchhHhhHHHHhhhhHHHHhhhH-HHHHHHHHHhhHHHHHHHHHhhccchh
Confidence 345689999999999888543 4432111 01111111 22222 233333 33345667777777777777
Q ss_pred H--hhhHHHHHHHHHHHHhhcccccCC
Q 019884 108 L--QRDVSKLEVFRKTLVQSLKDDEDA 132 (334)
Q Consensus 108 L--~RDvaKLE~FKk~LmqSLqeD~~~ 132 (334)
+ .-.|.|||+||+.|-+.+.-|...
T Consensus 108 ~~~~~~V~~le~~k~yl~~~~~l~t~~ 134 (737)
T KOG2218|consen 108 LQMRDEVLKLEVFKQYLGTLLELDTLL 134 (737)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 7 778999999999999999887753
No 413
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=50.74 E-value=59 Score=28.16 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 63 DSRIAELQSQIESIYSSLSDKLGQAQADKE-RLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 63 d~~i~~Lq~r~~~le~~L~~rL~~a~~e~~-kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
|+++.+++..-..+|...+.|+...+++-. -=++|-+.|-.-|-.|.|.|++||+
T Consensus 49 ddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Len 104 (108)
T COG3937 49 DDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLEN 104 (108)
T ss_pred HHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666677777776655 1123557888888899999999986
No 414
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=50.27 E-value=1.3e+02 Score=26.00 Aligned_cols=13 Identities=8% Similarity=0.204 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 019884 93 RLSKENEALTNTV 105 (334)
Q Consensus 93 kL~kE~~sLa~Tv 105 (334)
.|.++-+.|++.+
T Consensus 122 ~l~~qv~~~~~~~ 134 (141)
T PRK08476 122 QLLSQMPEFKEAL 134 (141)
T ss_pred HHHHhHHHHHHHH
Confidence 3444444555444
No 415
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.24 E-value=1.9e+02 Score=32.18 Aligned_cols=75 Identities=24% Similarity=0.328 Sum_probs=31.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (334)
|.++|.|+.+-++++.++.+.+.++++++.++-...| ...+-++=..+...|...+|+..-.|..||-.++.+|+
T Consensus 188 l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~q-----q~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q 262 (716)
T KOG4593|consen 188 LQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQ-----QNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQ 262 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444444444333322221 11111222222333344444444445555555555554
No 416
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=50.18 E-value=35 Score=25.44 Aligned_cols=47 Identities=17% Similarity=0.358 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019884 66 IAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (334)
..||++++.++..+|. -|+..+..... | ...++.+.||+|++.++.+
T Consensus 7 ~~EL~~~l~~lr~eLf~Lr~~~~~~~~~-----~---~~~i~~~Rk~IARi~Tvl~ 54 (55)
T TIGR00012 7 KEELAKKLDELKKELFELRFQKATGQLA-----K---PHRIRQVRRDIARLLTVLR 54 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcc-----c---chHHHHHHHHHHHHHHHHh
Confidence 4677778887777776 44444433222 1 3467888999999988753
No 417
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=50.14 E-value=1.6e+02 Score=30.52 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (334)
Q Consensus 54 ~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~T 104 (334)
.|-.++..=++.|+.|++|+..+|..|..+..+.+.-..+|..-.+.|.++
T Consensus 410 ~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444445555555555555555544444445555565555555554
No 418
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=50.01 E-value=2.2e+02 Score=28.13 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------------DKLGQAQADKERLSKENEALTNTVRK 107 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-------------~rL~~a~~e~~kL~kE~~sLa~TvKK 107 (334)
|..||+-|=.|++.+=...+.+-+....-=+.|-..|..|+ .||+.-.-+..||..=...|...--.
T Consensus 101 IsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae 180 (271)
T PF13805_consen 101 ISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAE 180 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q ss_pred HhhhHHHHHHHHHHHHh
Q 019884 108 LQRDVSKLEVFRKTLVQ 124 (334)
Q Consensus 108 L~RDvaKLE~FKk~Lmq 124 (334)
..=.=+.|..|||.-++
T Consensus 181 ~lvaEAqL~n~kR~~lK 197 (271)
T PF13805_consen 181 NLVAEAQLSNIKRQKLK 197 (271)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHH
No 419
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=49.99 E-value=2.5e+02 Score=28.33 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=41.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHH
Q 019884 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE-ALTNTVRKLQRDVSK 114 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~-sLa~TvKKL~RDvaK 114 (334)
.++--|++.|++|---||++|.+--....--++-|..++..++ .+|..--+.+.-|.+||+ -|++-..-|.--+-+
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~q 296 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQ 296 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4667899999999999999998633332222223444444444 233233333333333333 355544444444444
Q ss_pred HH
Q 019884 115 LE 116 (334)
Q Consensus 115 LE 116 (334)
.|
T Consensus 297 yE 298 (305)
T PF14915_consen 297 YE 298 (305)
T ss_pred HH
Confidence 44
No 420
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=49.76 E-value=2.2e+02 Score=26.61 Aligned_cols=74 Identities=19% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~la-EKd~~i~~Lq~r~~~le~~L~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
.+..+|..|...+..|-..+. ||+.....++.....|...|. -.-.--.+.+....+| ...+|||.-++.+|..
T Consensus 89 ~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE----~~i~krl~e~~~~l~~ 164 (247)
T PF06705_consen 89 QLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREERE----ENILKRLEEEENRLQE 164 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
No 421
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=49.70 E-value=1.1e+02 Score=28.91 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019884 60 AEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 60 aEKd~~i~~Lq~r~~~le~ 78 (334)
.+||+.|+.+++++..++.
T Consensus 103 ~~kd~~i~~~~~~l~~~~~ 121 (196)
T PF15272_consen 103 IEKDREIRTLQDELLSLEL 121 (196)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 5667777777766654443
No 422
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=49.70 E-value=94 Score=30.85 Aligned_cols=42 Identities=14% Similarity=0.381 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019884 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (334)
||++.++...-|--+|.-|+++|.+|.+-|+. ||+++|.-+.
T Consensus 228 risrLEdkv~~lk~~n~~L~~~l~~l~~~v~e---~k~~V~~hi~ 269 (279)
T KOG0837|consen 228 RISRLEDKVKTLKIYNRDLASELSKLKEQVAE---LKQKVMEHIH 269 (279)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 45555566666777888999999999988765 5888887654
No 423
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=49.69 E-value=50 Score=27.09 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 019884 62 KDSRIAELQSQIESIY 77 (334)
Q Consensus 62 Kd~~i~~Lq~r~~~le 77 (334)
++..+..|.+++..++
T Consensus 61 ~~ea~~~Le~~~e~le 76 (105)
T cd00632 61 KEEARTELKERLETIE 76 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 424
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=49.66 E-value=1.5e+02 Score=26.80 Aligned_cols=59 Identities=31% Similarity=0.462 Sum_probs=30.6
Q ss_pred CCCChHHHHhcCCCChhh--hHHHHHHHH--HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 11 TFDLPEEVLQVLPSDPFE--QLDVARKIT--SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (334)
Q Consensus 11 ~f~Lp~eilavLPsDPyE--QLdlArkIt--s~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~ 74 (334)
+-.+|+.+- ++|-.|++ +=++|--|+ .+=|=+=|..|=.|-+.--.+|.+ |+.||++..
T Consensus 39 e~~~~~~~~-~~pa~p~~~~~~~laa~i~~~akqId~LIdsLP~~~~~~e~Ql~~----i~kLq~en~ 101 (139)
T KOG1510|consen 39 EPESPDKVN-PIPAEPFEEYAQLLAADIAKKAKQIDTLIDSLPGEEGSAEAQLEK----IKKLQEENE 101 (139)
T ss_pred CCCCCCCCC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHH----HHHHHHHHH
Confidence 456777776 88888883 223333332 233444455555555444444433 555554444
No 425
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=49.53 E-value=1.2e+02 Score=29.93 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 56 RSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 56 R~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
|.+.-|.|..+.-|+.++..++..+.
T Consensus 160 ~~~~~e~d~rnq~l~~~i~~l~~~l~ 185 (264)
T PF07246_consen 160 KTQERENDRRNQILSHEISNLTNELS 185 (264)
T ss_pred HhhchhhhhHHHHHHHHHHHhhhhHH
Confidence 55555556677777777777777765
No 426
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=49.49 E-value=52 Score=25.83 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019884 65 RIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (334)
Q Consensus 65 ~i~~Lq~r~~~le~~L~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (334)
-+.||++++.+|..+|- -|+.++.....+ ...++.+.||+|++.++...
T Consensus 13 s~~eL~~~l~elk~elf~LRfq~atgql~n--------~~~ir~~RrdIARikTil~e 62 (67)
T CHL00154 13 TDSEISEEIIKTKKELFDLRLKKATRQNFK--------PHLFKHKKHRLAQLLTLLSS 62 (67)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCcccC--------hHHHHHHHHHHHHHHHHHHH
Confidence 35677888877777776 444444443222 24578899999999887653
No 427
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=49.38 E-value=2.3e+02 Score=26.69 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019884 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (334)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (334)
.+....+||.+|.+|+..|...+-.|+.--+..+.+|+.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777777777777665555555555553
No 428
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=49.37 E-value=64 Score=25.50 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRD 111 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (334)
+.....++|..||..|-..+..+..+
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555444444
No 429
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=49.36 E-value=1.1e+02 Score=32.45 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019884 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (334)
+.+|=..|..|-+++.-+..++..++ .|...+.++..+|.-.-+.|....|.|+..+.+
T Consensus 434 vdrl~~~L~qk~~~~~k~~~~~~~l~----~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 434 VDRLVESLQQKLKQEEKLRRKREDLE----EKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666655555555555 566689999999999999999999998876654
No 430
>PRK02119 hypothetical protein; Provisional
Probab=49.10 E-value=1.2e+02 Score=23.95 Aligned_cols=25 Identities=4% Similarity=-0.036 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 86 QAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
...+-..+.+++-+.|...++.|..
T Consensus 27 ~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 27 ELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555544
No 431
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=48.80 E-value=1.8e+02 Score=25.13 Aligned_cols=46 Identities=15% Similarity=0.332 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 77 YSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 77 e~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
...|..+...+-.-+.+|.+|-..|..++.+|.+...++..+=..+
T Consensus 35 ~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~ 80 (121)
T PF06320_consen 35 VDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSF 80 (121)
T ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444455555555555555555444444433333
No 432
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=48.74 E-value=95 Score=23.65 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIE 74 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~ 74 (334)
++.|+.+|..++..=...|..++.+++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567777777777666666666665554
No 433
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=48.74 E-value=1.3e+02 Score=25.45 Aligned_cols=56 Identities=16% Similarity=0.360 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 53 SALRSQLAEKDSRIAELQSQIESIYSSLS-----------------------DKLGQAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~-----------------------~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
-+|...+.+-++.|.+=|+||.-|+.-.+ +|.-.-.=.++.|.|||..+...+|.+
T Consensus 15 NKl~REi~Dn~kKIRDNqKRV~LLdNL~~YI~~~Ms~edi~~II~nMr~DYEdRVDDyiIknAElsKeRReis~k~k~~ 93 (95)
T PF04363_consen 15 NKLKREIEDNEKKIRDNQKRVLLLDNLSDYIKPDMSIEDIRAIIENMRSDYEDRVDDYIIKNAELSKERREISKKIKEL 93 (95)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhHHHHhHHHHHHhhHHHhHHHHHHHHHHHHh
Confidence 56777888899999999999999887655 222222334588999999988887765
No 434
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=48.52 E-value=2.3e+02 Score=26.27 Aligned_cols=29 Identities=41% Similarity=0.525 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 88 QADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
.+....|..+-+.+..+|.+|.+.+.+|+
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~ 126 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQ 126 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666665553
No 435
>PRK11519 tyrosine kinase; Provisional
Probab=48.42 E-value=2.4e+02 Score=30.69 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=19.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhcccccC
Q 019884 104 TVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (334)
Q Consensus 104 TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 131 (334)
....|.||+.--+..=..|++.+++-.-
T Consensus 371 ~~~~L~Re~~~~~~lY~~lL~r~~e~~i 398 (719)
T PRK11519 371 EIVRLTRDVESGQQVYMQLLNKQQELKI 398 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4456778887777777778888777543
No 436
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=48.42 E-value=1.1e+02 Score=34.42 Aligned_cols=74 Identities=28% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH---------HHHH----------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 019884 37 TSIAISTRVSDLESEHSALRSQLA---------EKDS----------RIAELQSQIESIYSSLS---DKLGQAQADKERL 94 (334)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~la---------EKd~----------~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL 94 (334)
+-||+| |.-|-+|.+.||.+|. ||.. ++..||..--.|+.+|+ .-+......|+.|
T Consensus 383 ~EIALA--~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneel 460 (861)
T PF15254_consen 383 VEIALA--MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEEL 460 (861)
T ss_pred hhhHhh--hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q ss_pred HHHHHHHHHHHHHHhhhH
Q 019884 95 SKENEALTNTVRKLQRDV 112 (334)
Q Consensus 95 ~kE~~sLa~TvKKL~RDv 112 (334)
.|..+++..--|+|...+
T Consensus 461 lk~~e~q~~Enk~~~~~~ 478 (861)
T PF15254_consen 461 LKVIENQKEENKRLRKMF 478 (861)
T ss_pred HHHHHHHHHHHHHHHHHH
No 437
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=48.41 E-value=2.3e+02 Score=29.87 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=21.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
+...|..+..|+...+..|......+..|+.-+..|...|.
T Consensus 279 ~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe 319 (522)
T PF05701_consen 279 LQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELE 319 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555444
No 438
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=48.07 E-value=1.4e+02 Score=23.68 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=38.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH-
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKENEALTNTVR- 106 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-----------------~rL~~a~~e~~kL~kE~~sLa~TvK- 106 (334)
+..|=.|+.+.=..+.|.|..+.++...+...=..+. .++....++..+|.+|+-.||.++-
T Consensus 10 ~~~LP~el~r~l~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~deKv~lA~~~~d 89 (105)
T PF12998_consen 10 LENLPAELQRNLTLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELSDEKVALAQQAYD 89 (105)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555444444333222221 4556666777788888888877643
Q ss_pred HHhhhHHHH
Q 019884 107 KLQRDVSKL 115 (334)
Q Consensus 107 KL~RDvaKL 115 (334)
-+.|.+.+|
T Consensus 90 ~v~~hi~rL 98 (105)
T PF12998_consen 90 LVDRHIRRL 98 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 234444444
No 439
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=47.91 E-value=1.8e+02 Score=32.31 Aligned_cols=8 Identities=13% Similarity=0.750 Sum_probs=4.4
Q ss_pred CCChHHHH
Q 019884 12 FDLPEEVL 19 (334)
Q Consensus 12 f~Lp~eil 19 (334)
++||++|+
T Consensus 492 ~Glp~~ii 499 (771)
T TIGR01069 492 YGIPHFII 499 (771)
T ss_pred hCcCHHHH
Confidence 44565555
No 440
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=47.91 E-value=2.2e+02 Score=26.05 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019884 61 EKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 61 EKd~~i~~Lq~r~~~le~~L~ 81 (334)
++...+..++.++..-|..|.
T Consensus 75 ~~~~el~~~E~rl~~rE~~L~ 95 (201)
T PF12072_consen 75 ERRKELQRLEKRLQQREEQLD 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555554
No 441
>PF13166 AAA_13: AAA domain
Probab=47.70 E-value=3e+02 Score=29.24 Aligned_cols=11 Identities=0% Similarity=0.380 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 019884 286 FAIFLANVKEL 296 (334)
Q Consensus 286 FsaFLANIKEL 296 (334)
|...+..|+++
T Consensus 616 Y~~l~~~l~~~ 626 (712)
T PF13166_consen 616 YHYLFKELYDF 626 (712)
T ss_pred HHHHHHHHHHH
Confidence 33444555555
No 442
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=47.42 E-value=2.8e+02 Score=32.35 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=41.5
Q ss_pred cCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 21 VLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIA-------ELQSQIESIYSSLSDKLGQAQADKER 93 (334)
Q Consensus 21 vLPsDPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~-------~Lq~r~~~le~~L~~rL~~a~~e~~k 93 (334)
.||.|=|-|...=++ +-+-.+..||.|+..++.+|.+-.+... .|.++...++..|+ ....+...
T Consensus 430 yisee~y~~~e~e~~----~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~----~~~~el~~ 501 (1041)
T KOG0243|consen 430 YISEERYTQEEKEKK----EMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQ----NKNKELES 501 (1041)
T ss_pred EechHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 366666765533222 2233455555555555555554444444 67777777766665 44444445
Q ss_pred HHHHHHHHHHHHHH
Q 019884 94 LSKENEALTNTVRK 107 (334)
Q Consensus 94 L~kE~~sLa~TvKK 107 (334)
+.+|...+-.++++
T Consensus 502 ~~ee~~~~~~~l~~ 515 (1041)
T KOG0243|consen 502 LKEELQQAKATLKE 515 (1041)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555333
No 443
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.39 E-value=1.6e+02 Score=34.23 Aligned_cols=70 Identities=29% Similarity=0.385 Sum_probs=48.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
.-+...|.-|+..|+..+.+|+++|.+|..-+.+.. +|+.....++.-|..+++.|..+=|-|-|.=.||
T Consensus 410 ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~----~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l 479 (1200)
T KOG0964|consen 410 KEQENILQKEIEDLESELKEKLEEIKELESSINETK----GRMEEFDAENTELKRELDELQDKRKELWREEKKL 479 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999999999888887766554 3444555566666666666666666665555554
No 444
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=47.29 E-value=1.8e+02 Score=27.55 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 62 Kd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
-.....+|+.+|..|+..|.+.......+..+|.++...+.-..+.|.
T Consensus 80 ~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~ 127 (196)
T PF15272_consen 80 SSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQ 127 (196)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677889999999999987777888888888989988888888887
No 445
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=47.25 E-value=1.1e+02 Score=28.17 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHhhcccccCC
Q 019884 90 DKERLSKENEALTNTVRKLQRDV---SKLEVFRKTLVQSLKDDEDA 132 (334)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL~RDv---aKLE~FKk~LmqSLqeD~~~ 132 (334)
+-..-+.+|+.+.+.+..|...+ .-|+.+-..|-+.|+++-+-
T Consensus 65 ~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~f~~ 110 (225)
T PF04340_consen 65 ELIENARENEAIFQRLHRLVLALLAARSLQELLQALDDGLREDFDV 110 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Confidence 44556677888877777777765 34777888899999887653
No 446
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=47.20 E-value=1.7e+02 Score=26.26 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=42.3
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 53 SALRSQLA--EKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 53 ~~LR~~la--EKd~~i~~Lq~r~~~le~~L~--~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
+.|=++|- .|++++.=-|.|-.--.+-+. =|.+.. +.+..|.+||..|.+.|++|.++++.+--=.-.+
T Consensus 35 ReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv-~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~ 107 (135)
T KOG4196|consen 35 RELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRV-QQKHELEKEKAELQQQVEKLKEENSRLRRELDAY 107 (135)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 566666555555433333333 344444 3467799999999999999999998864433333
No 447
>PHA00489 scaffolding protein
Probab=47.13 E-value=76 Score=27.01 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 60 aEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
.||.+.+..||+-|.+.-..+. ...+--+||.+||+-|...-.||-|.|
T Consensus 23 sErTeaLqqlr~~ygSf~sEy~----elT~a~eKl~aek~DLivsNskLFrql 71 (101)
T PHA00489 23 SERTEALQQLRESYGSFHSEYE----ELTEALEKLTAEKEDLIVSNSKLFRQL 71 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhhhhhhHHHHHHc
Confidence 3788888999999988888886 677777899999999988888887655
No 448
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=47.12 E-value=16 Score=27.71 Aligned_cols=28 Identities=39% Similarity=0.544 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 019884 33 ARKITSIAISTRVSDLESEHSALRSQLA 60 (334)
Q Consensus 33 ArkIts~A~atRVs~LE~E~~~LR~~la 60 (334)
||.....+...|+++||.|-..||.+|.
T Consensus 19 ~R~~d~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 19 ARSLDRSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 5566678888899999999999998885
No 449
>PRK10869 recombination and repair protein; Provisional
Probab=47.07 E-value=99 Score=32.72 Aligned_cols=50 Identities=12% Similarity=0.172 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHhhcccccC
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSK-----LEVFRKTLVQSLKDDED 131 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK-----LE~FKk~LmqSLqeD~~ 131 (334)
..|....++.++|.++.+.|...++++...|++ .+.|.+.|.+-|.+=.-
T Consensus 334 ~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~m 388 (553)
T PRK10869 334 QQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELSM 388 (553)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345555666778888888888888888877774 56788888777766543
No 450
>PF14992 TMCO5: TMCO5 family
Probab=47.07 E-value=1.2e+02 Score=30.15 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH---HHHHHHHHHHHHHHHHHHHH---------
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIE-----------SIYSSLS---DKLGQAQADKERLSKENEAL--------- 101 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~-----------~le~~L~---~rL~~a~~e~~kL~kE~~sL--------- 101 (334)
+..||-|.++|-.+-.---+-|.+||.++. ++...|+ .+|..++.+++.+-++-..+
T Consensus 65 l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~ 144 (280)
T PF14992_consen 65 LQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQ 144 (280)
T ss_pred HHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHhhhHHHHHHHHHHHH
Q 019884 102 -----TNTVRKLQRDVSKLEVFRKTLV 123 (334)
Q Consensus 102 -----a~TvKKL~RDvaKLE~FKk~Lm 123 (334)
++-+|||...+.|+|.-|-.++
T Consensus 145 l~eDq~~~i~klkE~L~rmE~ekE~~l 171 (280)
T PF14992_consen 145 LCEDQANEIKKLKEKLRRMEEEKEMLL 171 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 451
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=46.98 E-value=6.4 Score=41.50 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEA 100 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-------~rL~~a~~e~~kL~kE~~s 100 (334)
.+|.+.|.||..|+++|..=.+.+++-+.|+-.=|.+.+ +||...+++..+++.|+|.
T Consensus 369 ~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~ 433 (495)
T PF12004_consen 369 KEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDS 433 (495)
T ss_dssp -----------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHH
No 452
>PRK00106 hypothetical protein; Provisional
Probab=46.95 E-value=4e+02 Score=28.69 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019884 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (334)
.+|.+..+.|...-+.|..--.+++..+....+-|+
T Consensus 125 ~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le 160 (535)
T PRK00106 125 KTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELE 160 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444544444
No 453
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=46.88 E-value=1.6e+02 Score=23.94 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 91 KERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
...|..|-..|...++.|.-.+..+|.
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 454
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.53 E-value=2.5e+02 Score=32.23 Aligned_cols=80 Identities=19% Similarity=0.338 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHH----HHHHHHHHHHHH----------HHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLA----EKDSRIAELQSQ----------IESIYSSLS----------DKLGQAQADKERLSKENEA 100 (334)
Q Consensus 45 Vs~LE~E~~~LR~~la----EKd~~i~~Lq~r----------~~~le~~L~----------~rL~~a~~e~~kL~kE~~s 100 (334)
+..|-+++..+-++|. ||..+.+.|... ++.|++++. +.|....-|.++-.+|-+.
T Consensus 488 i~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi 567 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDI 567 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Q 019884 101 LTNTVRKLQRDVSKLEVFRKTLVQ 124 (334)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~Lmq 124 (334)
+-++.|+|.-||.++-.=|+.||.
T Consensus 568 ~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 568 FNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 455
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=46.26 E-value=52 Score=37.13 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIE 74 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~ 74 (334)
+++|+.+|..++..-+..|+.++.+++
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~ 953 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKIS 953 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555555444444444444444443
No 456
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=46.23 E-value=1.5e+02 Score=25.07 Aligned_cols=49 Identities=24% Similarity=0.307 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 60 aEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
.||.+.+..||.-|.+.-.++. ....--+||.+||+-|...-.||-|.+
T Consensus 22 sErTeaLqqlr~~~~sf~sEy~----dlT~~~eKl~aek~DL~vsNskLFrQ~ 70 (97)
T PF11418_consen 22 SERTEALQQLRESYTSFHSEYE----DLTEALEKLTAEKEDLIVSNSKLFRQH 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhhhhhhHHHHHHh
Confidence 3788888899999888888776 677777899999999988877776655
No 457
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=46.10 E-value=46 Score=27.17 Aligned_cols=64 Identities=22% Similarity=0.432 Sum_probs=41.5
Q ss_pred CCChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 12 FDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (334)
Q Consensus 12 f~Lp~eilavLPsDPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 77 (334)
..-++.|+-.|-.|=|-.+++..-|- =+..|+..|+..+..|+.++.+....+..++..++.+-
T Consensus 55 i~~~~~vlV~lG~~~~vE~s~~eA~~--~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 55 IPDTDKVLVSLGAGYYVEMSLEEAIE--FLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp -SSTTEEEEEEETTEEEEEEHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred eCCCCEEEEEeeCCeEEEecHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555555555554433222 14578888888888888888888888888877766543
No 458
>PHA03332 membrane glycoprotein; Provisional
Probab=45.87 E-value=2.9e+02 Score=32.60 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=34.5
Q ss_pred HhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~la----EKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE 97 (334)
.||++|..-+.+|=..|+ +-|+-|.+-..||+.||.++..|+.......++|+..
T Consensus 905 aAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 905 ARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665555554443 5677777777888888877775555555555555444
No 459
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=45.80 E-value=56 Score=28.91 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAELQSQIES 75 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~ 75 (334)
..|.-+.+|..++..||.+|..|++++..
T Consensus 91 ~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~ 119 (131)
T PF04859_consen 91 TYEIVVKKLEAELRAKDSEIDRLREKLDE 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555443
No 460
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=45.74 E-value=2.5e+02 Score=25.98 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (334)
.|++++.........|..++..+...|.+|+.=-..|=+
T Consensus 89 ~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ 127 (219)
T TIGR02977 89 AALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQA 127 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666666554444433
No 461
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=45.45 E-value=2.1e+02 Score=29.12 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=17.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhcccccCC
Q 019884 104 TVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (334)
Q Consensus 104 TvKKL~RDvaKLE~FKk~LmqSLqeD~~~ 132 (334)
....|.||+.=.++.=.++++..|+....
T Consensus 374 ~l~~L~Re~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 374 QLRELEREAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666667776666543
No 462
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=45.43 E-value=3.2e+02 Score=30.14 Aligned_cols=65 Identities=18% Similarity=0.314 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHhhccccc
Q 019884 66 IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE---VFRKTLVQSLKDDE 130 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE---~FKk~LmqSLqeD~ 130 (334)
|..|+.++..|...+. .......++.+...++...+..-++.++.+|-.-+ .-+|.|-+-++|=.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5556666665555554 33333334444444444444444444444444333 45555555555443
No 463
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.26 E-value=1.9e+02 Score=33.65 Aligned_cols=101 Identities=22% Similarity=0.349 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHHHHHHhh--------hhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 019884 27 FEQLDVARKITSIAISTRV--------SDLES-------EHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQ 88 (334)
Q Consensus 27 yEQLdlArkIts~A~atRV--------s~LE~-------E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~ 88 (334)
|++||=-||+.--+|-.|- -+||. +...++..+.+..+.+++|...+.+|+..|. .-..++.
T Consensus 213 Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~ 292 (1200)
T KOG0964|consen 213 YQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLK 292 (1200)
T ss_pred HHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888887776552 23332 2345666777778888888888888887776 2222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019884 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (334)
.+..+..+++-.|--.+|-|++.+.-=+-=|...++.|+
T Consensus 293 a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~ 331 (1200)
T KOG0964|consen 293 ARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQ 331 (1200)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHH
Confidence 344455555777777778777766544433433444433
No 464
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=45.21 E-value=1.3e+02 Score=27.95 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=38.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERL 94 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL 94 (334)
..-+...+.=+....+.|.||..++..-+.||..|...|. .+..|-++.
T Consensus 122 ~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~----~Ar~D~~~t 170 (188)
T PF05335_consen 122 QANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQ----AARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 4456666777788889999999999999999999998887 555555443
No 465
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=45.17 E-value=1.4e+02 Score=25.51 Aligned_cols=42 Identities=31% Similarity=0.408 Sum_probs=25.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
-+|...|..|..-+.+||.++.|.=+.|..+..++..+..++
T Consensus 75 ~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~ 116 (132)
T PF10392_consen 75 QAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTS 116 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666666666665555555544
No 466
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=44.73 E-value=3.2e+02 Score=27.00 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhcccc-------HHHHHHhhhhhcC
Q 019884 285 QFAIFLANVKELNAHKQT-------KEETLRKTDEVFG 315 (334)
Q Consensus 285 QFsaFLANIKELNAhkQT-------REETL~KA~eIFG 315 (334)
++..|...=++|-.|... =++||.|..++|+
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~ 240 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFE 240 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 555555555555554422 2456666666665
No 467
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=44.67 E-value=77 Score=29.17 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
.=-|.|-..||..|+.-+++|..|+.=+..-|..+
T Consensus 25 ~LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~ 59 (162)
T PF04201_consen 25 GLSEEEREELRSELAKVEEEIQTLRQVLAAKERHC 59 (162)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33478889999999999999988886655444433
No 468
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=44.59 E-value=2.5e+02 Score=27.39 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred hHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH-HHH
Q 019884 15 PEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQ-------------IESIY-SSL 80 (334)
Q Consensus 15 p~eilavLPsDPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r-------------~~~le-~~L 80 (334)
++++.+.+| ++++-+ ...+..-|..|+.-+..|..--.+|+..+.+|+++ ....+ ..+
T Consensus 170 ~~~l~~~~P-s~~~~~-------~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~~ddI~~~ll~~~~~~~~~~~ 241 (342)
T cd08915 170 YKELKAFIP-SPYPAL-------DPEVSEVVSSLRPLLNEVSELEKERERFISELEIKSRNNDILPKLITEYKKNGTTEF 241 (342)
T ss_pred hHHHHHhCC-CccccC-------CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHhhccccchh
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHhhccc
Q 019884 81 S-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF------RKTLVQSLKD 128 (334)
Q Consensus 81 ~-------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F------Kk~LmqSLqe 128 (334)
. .+.........+...+...|.+.++..+.++.+...+ +...++.|..
T Consensus 242 e~lf~~eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~~~~~~~r~~~l~~L~~ 302 (342)
T cd08915 242 EDLFEEHLKKFDKDLTYVEKTKKKQIELIKEIDAANQEFSQVKNSNDSLDPREEALQDLEA 302 (342)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHH
No 469
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=44.25 E-value=1.6e+02 Score=23.45 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 65 RIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 65 ~i~~Lq~r~~~le~~L~----~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
...+|.=||--||..|+ .-...+..+|..|.-|..+|...++.+.+-|.+++
T Consensus 15 ENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 15 ENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred hhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555 33345555555555555555555555555544443
No 470
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=44.19 E-value=41 Score=27.01 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHH
Q 019884 48 LESEHSALRSQLAE 61 (334)
Q Consensus 48 LE~E~~~LR~~laE 61 (334)
++.+++.||.+|..
T Consensus 26 ~~~~~~~lk~Klq~ 39 (83)
T PF07544_consen 26 LDTATGSLKHKLQK 39 (83)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 471
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=44.10 E-value=1.7e+02 Score=25.98 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=23.8
Q ss_pred CCCChHHHHhcCCCCh---hhhHHHHHHHHHHHHHHhhhhhHHHH
Q 019884 11 TFDLPEEVLQVLPSDP---FEQLDVARKITSIAISTRVSDLESEH 52 (334)
Q Consensus 11 ~f~Lp~eilavLPsDP---yEQLdlArkIts~A~atRVs~LE~E~ 52 (334)
..++.+.+|.=|=+-| |-.-..+-+.+.--|+.++.+||.|.
T Consensus 7 pv~fS~~ll~~L~~s~etD~sR~q~~e~~iq~Rva~eL~~L~~~~ 51 (142)
T PF07956_consen 7 PVQFSQSLLSQLQSSTETDSSRAQTLELHIQERVAEELKRLEEEE 51 (142)
T ss_pred CcccCHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677776664332 33444445555666666666666654
No 472
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=44.03 E-value=2e+02 Score=33.23 Aligned_cols=63 Identities=16% Similarity=0.324 Sum_probs=56.4
Q ss_pred cchHHHHHHHHhcCC--HHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChhHHHHHHHhhcc
Q 019884 268 VDGKEFFRQVRNRLS--YEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKDLYTIFEGLITR 331 (334)
Q Consensus 268 VDGKEFFRQARsRLS--YEQFsaFLANIKELNAhkQTREETL~KA~eIFG~~NkdLY~~FegLL~R 331 (334)
-|.+-|..+++-+++ .|=|+.||.-+|+|-.+.-.-.+.+..+-.||-. -++|.+-|-..|=.
T Consensus 129 ~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrg-YP~LIegFNtFLPs 193 (1163)
T COG5602 129 SDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRG-YPHLIEGFNTFLPS 193 (1163)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcC-ChHHHHHHhhhCCC
Confidence 499999999999988 4789999999999999999999999999999974 68899999876643
No 473
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=43.99 E-value=5.2e+02 Score=30.10 Aligned_cols=39 Identities=15% Similarity=0.321 Sum_probs=19.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
.++..+|.++.....++.+-...+...+..+..++..++
T Consensus 621 ~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1201)
T PF12128_consen 621 ERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQ 659 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344555555555555555555555444444444444443
No 474
>PRK05423 hypothetical protein; Provisional
Probab=43.84 E-value=1.4e+02 Score=25.70 Aligned_cols=56 Identities=14% Similarity=0.327 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 53 SALRSQLAEKDSRIAELQSQIESIYSSLS-----------------------DKLGQAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~-----------------------~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
-+|...+.+-++.|.+=|+||.-|+.-++ +|.-.-.=.++.|.|||..|+..+|.+
T Consensus 22 NKl~REi~DnekKIRDNqKRVlLLdNL~~YIk~~Ms~e~i~~II~nMr~DYEdRVDDyiIknAElSKeRReiskklk~~ 100 (104)
T PRK05423 22 NKLQREIQDNEKKIRDNQKRVLLLDNLSDYIKPGMSIEEIQGIIANMKSDYEDRVDDYIIKNAELSKERREISKKLKAM 100 (104)
T ss_pred HHHHHHHHhhHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHhhHHHHHhhHHhhHHHHHHHHHHHHh
Confidence 45677778889999999999999987655 222233334688999999998877765
No 475
>PF14282 FlxA: FlxA-like protein
Probab=43.83 E-value=1.2e+02 Score=25.35 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=32.9
Q ss_pred HHHHhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRS----QLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~----~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
.|..++..|..++..|.. --.+|...+..|+.++..|+.+|+
T Consensus 23 ~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777 224788899999999999998886
No 476
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.75 E-value=3.9e+02 Score=27.71 Aligned_cols=89 Identities=24% Similarity=0.233 Sum_probs=45.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH-
Q 019884 39 IAISTRVSDLESEHSALRSQLA-EKDSRIAELQ---SQIESIYSSLSDKLGQAQADKERLSK--------------ENE- 99 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~la-EKd~~i~~Lq---~r~~~le~~L~~rL~~a~~e~~kL~k--------------E~~- 99 (334)
..+......||.++.+|+.++. |-.-....|| -|+..||.++-+-+-.=..|...|.. ||.
T Consensus 222 ~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaR 301 (395)
T PF10267_consen 222 REIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERAR 301 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3566677788888888877443 3333333332 35555555554222222333333333 332
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019884 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 100 sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (334)
.+-.-+-..+--|+||| ..++.|-.|-+
T Consensus 302 di~E~~Es~qtRisklE--~~~~Qq~~q~e 329 (395)
T PF10267_consen 302 DIWEVMESCQTRISKLE--QQQQQQVVQLE 329 (395)
T ss_pred HHHHHHHHHHHHHHHHH--HHHhhhhhhhc
Confidence 23334555556667777 56666655544
No 477
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=43.35 E-value=1.9e+02 Score=23.89 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019884 87 AQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 87 a~~e~~kL~kE~~sLa~TvKKL 108 (334)
..++|.+|..|..+-..-+..|
T Consensus 51 L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 51 LERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666555544444
No 478
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=43.20 E-value=2.4e+02 Score=30.65 Aligned_cols=83 Identities=22% Similarity=0.278 Sum_probs=53.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALT----NTVRKLQRDVSKL 115 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa----~TvKKL~RDvaKL 115 (334)
.-|.++|.|+..|++.+.+=...+..=.-.++.|...|. .-|..+.+++++++..-.+|- +.=-.|.|=+.||
T Consensus 347 ~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l 426 (570)
T COG4477 347 GSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKL 426 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888887777766666654445555555554 445578888887777655552 2334566666777
Q ss_pred HHHHHHHHhh
Q 019884 116 EVFRKTLVQS 125 (334)
Q Consensus 116 E~FKk~LmqS 125 (334)
...||-+-.|
T Consensus 427 ~eikR~mek~ 436 (570)
T COG4477 427 HEIKRYMEKS 436 (570)
T ss_pred HHHHHHHHHc
Confidence 7777766543
No 479
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=43.13 E-value=1.5e+02 Score=31.45 Aligned_cols=49 Identities=24% Similarity=0.278 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCCCCcccc
Q 019884 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDEDASTGATRI 139 (334)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~~~~~~~~ 139 (334)
.|--++|..|-..|+ .+|-+-++|||+=||-|..-|-+.-..+....||
T Consensus 189 V~lentlEQEqEalv---N~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdi 237 (552)
T KOG2129|consen 189 VQLENTLEQEQEALV---NSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDI 237 (552)
T ss_pred HHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhh
Confidence 344455666666664 4777889999999999999993333333333344
No 480
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=43.03 E-value=2.5e+02 Score=29.83 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 33 ArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
|-.||+-+--.+...+++++.+||..+..=.+.+.+|+.=+..+=.+++ +.|+.. |+.|.-++.+|..++
T Consensus 105 aaqitA~vAl~~a~~na~~I~~lk~si~~tN~AV~~l~~g~~~~~~av~-----~lQd~I-----N~~i~Pain~l~C~v 174 (490)
T PF00523_consen 105 AAQITAAVALHQAQQNAANILRLKESIQSTNEAVQELTNGLSQLAVAVQ-----ALQDFI-----NNEIIPAINQLSCEV 174 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-----HHTHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHhhHHhHHHHHHHhhhhhcccccceecchHHHHHHHHHH-----HHHHHH-----HHHhhhhhhhcchhh
Confidence 5568887777899999999999999999999999999999998888775 344332 567888888888888
Q ss_pred HHHH
Q 019884 113 SKLE 116 (334)
Q Consensus 113 aKLE 116 (334)
+.+.
T Consensus 175 ~~~~ 178 (490)
T PF00523_consen 175 ADNQ 178 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 481
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=42.86 E-value=1.8e+02 Score=31.57 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=23.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcccccCC
Q 019884 102 TNTVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (334)
Q Consensus 102 a~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~ 132 (334)
......|.||+.-.+..=..|++..+|-.-.
T Consensus 369 e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 369 QQEVLRLSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678899988888888888888876544
No 482
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=42.86 E-value=1.9e+02 Score=23.83 Aligned_cols=87 Identities=18% Similarity=0.273 Sum_probs=62.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
..+..|-..|+..-..|+..+..=+..+.+-..+...+..... ..-..-..+..+|..+...|-.-+.+|..-|.++
T Consensus 28 ~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 28 EQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777888777777888777777766665554 3334455666777777788888888888888888
Q ss_pred HHHHHHHHhh
Q 019884 116 EVFRKTLVQS 125 (334)
Q Consensus 116 E~FKk~LmqS 125 (334)
..|+.=|.+=
T Consensus 108 ~~Y~~fL~~v 117 (126)
T PF13863_consen 108 KKYEEFLEKV 117 (126)
T ss_pred HHHHHHHHHh
Confidence 8888777653
No 483
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.81 E-value=1.6e+02 Score=27.59 Aligned_cols=81 Identities=10% Similarity=0.136 Sum_probs=51.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQ---SQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq---~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (334)
+|..+|.|+..|..+|.+=-.....+- ..+...+..+. .++.+--..-.+...++..++|...-+..++.+++
T Consensus 3 ~i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~----~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~ 78 (200)
T cd07639 3 AIEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFV----DGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHA 78 (200)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 577889999998888765333222221 13444444443 55555544444444577888888888888888888
Q ss_pred HHHhhccc
Q 019884 121 TLVQSLKD 128 (334)
Q Consensus 121 ~LmqSLqe 128 (334)
.||...+.
T Consensus 79 ~Ll~~~~~ 86 (200)
T cd07639 79 ELLEATQF 86 (200)
T ss_pred HHHHHHHH
Confidence 88776544
No 484
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=42.49 E-value=3e+02 Score=26.06 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Q 019884 93 RLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 93 kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
.|..++.+|.+..+-|.|.-.+|
T Consensus 78 ~lEE~~~~L~aq~rqlEkE~q~L 100 (193)
T PF14662_consen 78 SLEEENRSLLAQARQLEKEQQSL 100 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555554444444333
No 485
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=42.36 E-value=76 Score=27.02 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
+..|+..|+..+..|..++.++...+..++..+..+....+
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~ 139 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAA 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 486
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=42.19 E-value=1.1e+02 Score=27.44 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 77 (334)
+..||.|-.+++..+..|...+.+|..+...+.
T Consensus 3 ~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~k 35 (142)
T PF08781_consen 3 CEELEEEKQRRRERIKKKKEQLQELILQQVAFK 35 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999988876554
No 487
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.10 E-value=3.8e+02 Score=28.89 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=18.2
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhhhHH
Q 019884 89 ADKERLSKEN---EALTNTVRKLQRDVS 113 (334)
Q Consensus 89 ~e~~kL~kE~---~sLa~TvKKL~RDva 113 (334)
|.++.|+.|- .-|++.||+++||+.
T Consensus 466 e~~e~lt~~~e~l~~Lv~Ilk~d~edi~ 493 (508)
T KOG3091|consen 466 EMKEHLTQEQEALTKLVNILKGDQEDIK 493 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4457777774 457888888888886
No 488
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=42.09 E-value=4.2e+02 Score=28.49 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=40.2
Q ss_pred HHHHHhhhhh--HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 39 IAISTRVSDL--ESEHSALRSQLAEKDSR----IAELQSQIESIY---SSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 39 ~A~atRVs~L--E~E~~~LR~~laEKd~~----i~~Lq~r~~~le---~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
..|..|...| +.++..+++++.+=+.. ..+|++...+++ .+.++-...+..-++.|..+++.+.+.++.|.
T Consensus 178 ~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 178 QKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5677777777 56677777766642221 223333333333 33332223344444555555555555555553
Q ss_pred ----hhHHHHH
Q 019884 110 ----RDVSKLE 116 (334)
Q Consensus 110 ----RDvaKLE 116 (334)
.|+++|+
T Consensus 258 ~ap~~D~~~L~ 268 (555)
T TIGR03545 258 KAPQNDLKRLE 268 (555)
T ss_pred hccHhHHHHHH
Confidence 3566654
No 489
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=42.08 E-value=2.7e+02 Score=25.70 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 88 QADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
.+++++|++++..|...+.+|..++..+
T Consensus 110 ~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 110 KNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 490
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=42.04 E-value=3.3e+02 Score=30.44 Aligned_cols=35 Identities=34% Similarity=0.387 Sum_probs=19.1
Q ss_pred HHhcCCH--HHHHHHHHHHHHHhhccccHHHHHHhhhhhc
Q 019884 277 VRNRLSY--EQFAIFLANVKELNAHKQTKEETLRKTDEVF 314 (334)
Q Consensus 277 ARsRLSY--EQFsaFLANIKELNAhkQTREETL~KA~eIF 314 (334)
.|+=||= ||-..+=.- |=|-|||-|-+|..-..=|
T Consensus 595 LKSLLSTKREQIaTLRTV---LKANKqTAEvALanLKsKY 631 (717)
T PF09730_consen 595 LKSLLSTKREQIATLRTV---LKANKQTAEVALANLKSKY 631 (717)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3444442 454443322 3366788888887655433
No 491
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.03 E-value=1.5e+02 Score=29.80 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=18.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHH
Q 019884 39 IAISTRVSDLESEHSALRSQLAEKDS 64 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~laEKd~ 64 (334)
-+++++++.|+.|++++|+++..-..
T Consensus 132 ~~~~~~~~~l~~~va~v~q~~~~qq~ 157 (300)
T KOG2629|consen 132 DKAAKSLNALMDEVAQVSQLLATQQS 157 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888887775433
No 492
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=41.97 E-value=2e+02 Score=23.76 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
...+.|..|.+|++.+...=..|.+...+|
T Consensus 29 ELKekn~~L~~e~~~~~~~r~~L~~en~qL 58 (79)
T PRK15422 29 ELKEKNNSLSQEVQNAQHQREELERENNHL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444566666666666555555555555554
No 493
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=41.90 E-value=23 Score=29.32 Aligned_cols=43 Identities=28% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019884 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (334)
Q Consensus 84 L~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 126 (334)
|....++...|.+|++.|-..+..|+..+..++.-...|-+.|
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
No 494
>PTZ00421 coronin; Provisional
Probab=41.84 E-value=37 Score=35.32 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 76 (334)
|++..|...+.|+.++|..|.||+.++-+--+++-.+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (493)
T PTZ00421 457 ALSEKLRTQHEEIKRCREALQKKESIVMETLEKIQSI 493 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 495
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.84 E-value=2.8e+02 Score=25.84 Aligned_cols=84 Identities=8% Similarity=0.160 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lm 123 (334)
+|..+|.++..|..+|..=-..+.++-+--..+-.+.. ....++.+-......-..+++++++...-+..+++++..|+
T Consensus 3 ~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~-~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~l~ 81 (200)
T cd07637 3 TIDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNK-LFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMILF 81 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccc
Q 019884 124 QSLKD 128 (334)
Q Consensus 124 qSLqe 128 (334)
.-.+.
T Consensus 82 ~q~e~ 86 (200)
T cd07637 82 DQAQR 86 (200)
T ss_pred HHHHH
No 496
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.84 E-value=65 Score=36.48 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----------------HHHHHHHHHHHHHHH
Q 019884 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-D----------------KLGQAQADKERLSKE 97 (334)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-~----------------rL~~a~~e~~kL~kE 97 (334)
++|..++|.-....|.++..|.+++..=+..|.+|-+++.+|+.+.- . +....-+|++.|.=+
T Consensus 840 ~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~ 919 (970)
T KOG0946|consen 840 GSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKTVKSENLSLKIVSNKQEQEELLVL 919 (970)
T ss_pred hccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhcccchhcccchhhhHHHHHHH
Q ss_pred HHHHHHHHHHHhhhHHHHH
Q 019884 98 NEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 98 ~~sLa~TvKKL~RDvaKLE 116 (334)
+..--+-+-.|.+-+.+|+
T Consensus 920 ~~~~~~~i~alk~~l~dL~ 938 (970)
T KOG0946|consen 920 LADQKEKIQALKEALEDLN 938 (970)
T ss_pred HhhHHHHHHHHHHHHHHhC
No 497
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.71 E-value=1.9e+02 Score=31.82 Aligned_cols=75 Identities=23% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FK 119 (334)
+.+|.+-.+||..|-|=--..+-|=..|+.||.+=+ +-|+...=|-+-|--|++.|-.++-=||-.|.-++.+|
T Consensus 145 ~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk 224 (772)
T KOG0999|consen 145 AAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLK 224 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 019884 120 K 120 (334)
Q Consensus 120 k 120 (334)
+
T Consensus 225 ~ 225 (772)
T KOG0999|consen 225 E 225 (772)
T ss_pred H
No 498
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=41.70 E-value=3e+02 Score=25.77 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 41 ISTRVSDLESEH-SALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 41 ~atRVs~LE~E~-~~LR~~laEKd~~i~~Lq~r~~~le~~L~----~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
|..|+..++.++ ..-+++-..-+..++.|++.+..||..|. .|......=+..+...-+.+.+.|...--+ |+
T Consensus 10 i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~--~~ 87 (247)
T PF06705_consen 10 INERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISE--KQ 87 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q ss_pred HHHHHHH
Q 019884 116 EVFRKTL 122 (334)
Q Consensus 116 E~FKk~L 122 (334)
+.++..|
T Consensus 88 ~~~~~~l 94 (247)
T PF06705_consen 88 EQLQSRL 94 (247)
T ss_pred HHHHHHH
No 499
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=41.61 E-value=8.7 Score=40.84 Aligned_cols=78 Identities=22% Similarity=0.477 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL-TNTVRKLQRDVSKLEVFRKTLV 123 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sL-a~TvKKL~RDvaKLE~FKk~Lm 123 (334)
+.+|+.-...|..+-.++...+.+|..++..|=.-|. .-.++...-..++..| ..+|..|.-.|.+|+.+|+.-|
T Consensus 209 l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~----~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~l 284 (619)
T PF03999_consen 209 LEKLQELLQELEEEKEEREEKLQELREKIEELWNRLD----VPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNL 284 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred hhc
Q 019884 124 QSL 126 (334)
Q Consensus 124 qSL 126 (334)
..|
T Consensus 285 k~~ 287 (619)
T PF03999_consen 285 KEF 287 (619)
T ss_dssp ---
T ss_pred HHH
No 500
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=41.45 E-value=2.6e+02 Score=27.71 Aligned_cols=71 Identities=18% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
++-||...-+. .+=+..++|-+.+|.+|.++-..|....+ ....-+..|..+|..|..-+--|+.+|+.|.
T Consensus 75 LKNRVAAQtaR-DrKKaRm~eme~~i~dL~een~~L~~en~----~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 75 LKNRVAAQTAR-DRKKARMEEMEYEIKDLTEENEILQNEND----SLRAINESLLAKNHELDSELELLRQELAELK 145 (292)
T ss_pred HHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Done!