Query 019884
Match_columns 334
No_of_seqs 80 out of 82
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 08:33:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ld7_B Paired amphipathic heli 97.9 3E-05 1E-09 60.4 7.6 65 266-331 7-72 (75)
2 2cr7_A Paired amphipathic heli 97.4 0.00068 2.3E-08 53.1 8.0 65 266-331 9-75 (80)
3 2czy_A Paired amphipathic heli 97.0 0.0018 6.1E-08 50.3 6.8 62 269-331 6-69 (77)
4 3hnw_A Uncharacterized protein 96.7 0.02 6.9E-07 48.9 11.7 70 36-109 61-130 (138)
5 1c1g_A Tropomyosin; contractIl 96.3 0.1 3.4E-06 44.1 13.3 42 40-81 3-44 (284)
6 2dfs_A Myosin-5A; myosin-V, in 95.6 0.1 3.5E-06 57.0 13.3 73 43-122 984-1061(1080)
7 3u1c_A Tropomyosin alpha-1 cha 95.5 0.21 7.1E-06 40.4 11.6 77 40-116 20-99 (101)
8 3a7p_A Autophagy protein 16; c 95.4 0.14 4.7E-06 45.0 10.9 72 40-115 72-144 (152)
9 1e91_A Paired amphipathic heli 95.2 0.057 2E-06 42.5 7.2 64 266-330 6-81 (85)
10 1g1e_B SIN3A; four-helix bundl 95.1 0.038 1.3E-06 43.9 5.9 63 266-329 9-86 (89)
11 2v4h_A NF-kappa-B essential mo 94.7 0.35 1.2E-05 40.4 10.8 64 49-116 44-110 (110)
12 2dfs_A Myosin-5A; myosin-V, in 94.6 0.033 1.1E-06 60.8 5.8 73 44-116 922-997 (1080)
13 3u59_A Tropomyosin beta chain; 94.5 0.49 1.7E-05 37.9 11.1 77 40-116 20-99 (101)
14 2f05_A Paired amphipathic heli 93.9 0.15 5.2E-06 41.8 7.0 65 266-331 6-82 (105)
15 3bas_A Myosin heavy chain, str 93.4 1 3.4E-05 35.5 10.7 68 45-112 16-86 (89)
16 3m9b_A Proteasome-associated A 93.0 0.066 2.3E-06 50.3 3.9 69 42-115 23-94 (251)
17 3cvf_A Homer-3, homer protein 92.4 0.69 2.4E-05 36.5 8.4 56 46-105 2-57 (79)
18 2v71_A Nuclear distribution pr 92.4 2 6.8E-05 38.7 12.4 45 86-130 92-136 (189)
19 3oja_B Anopheles plasmodium-re 92.3 0.67 2.3E-05 45.5 10.1 41 89-129 544-584 (597)
20 3i00_A HIP-I, huntingtin-inter 92.0 0.92 3.2E-05 38.1 9.2 55 44-101 23-80 (120)
21 3a7o_A Autophagy protein 16; c 92.0 0.94 3.2E-05 35.4 8.5 61 44-108 12-72 (75)
22 2fxo_A Myosin heavy chain, car 92.0 3.1 0.00011 34.5 12.5 30 83-112 63-92 (129)
23 2fxo_A Myosin heavy chain, car 91.9 4.8 0.00016 33.3 14.4 73 44-116 42-124 (129)
24 2b9c_A Striated-muscle alpha t 91.3 2.5 8.7E-05 36.3 11.5 73 38-110 47-122 (147)
25 3oja_B Anopheles plasmodium-re 91.3 2 6.9E-05 42.1 12.2 25 42-66 462-486 (597)
26 3na7_A HP0958; flagellar bioge 91.3 1.8 6.2E-05 39.3 11.1 78 25-104 88-172 (256)
27 3hnw_A Uncharacterized protein 91.2 1.9 6.6E-05 36.6 10.5 64 50-117 68-131 (138)
28 1i84_S Smooth muscle myosin he 90.8 1.4 4.7E-05 48.2 11.6 76 44-119 858-943 (1184)
29 2akf_A Coronin-1A; coiled coil 90.5 0.32 1.1E-05 32.2 3.9 30 45-81 1-30 (32)
30 4emc_A Monopolin complex subun 90.1 0.73 2.5E-05 41.7 7.3 37 45-81 22-58 (190)
31 2v66_B Nuclear distribution pr 90.1 5.5 0.00019 33.1 12.0 75 41-129 8-82 (111)
32 2efr_A General control protein 90.0 6.8 0.00023 34.2 13.1 74 38-111 65-141 (155)
33 3vkg_A Dynein heavy chain, cyt 89.0 2.1 7.1E-05 52.0 11.9 86 43-128 2014-2134(3245)
34 3s4r_A Vimentin; alpha-helix, 88.4 7.9 0.00027 30.8 11.4 69 40-115 20-89 (93)
35 1l8d_A DNA double-strand break 88.4 8 0.00027 30.5 11.6 32 86-117 68-99 (112)
36 1i84_S Smooth muscle myosin he 88.3 3.3 0.00011 45.3 12.1 27 51-77 858-884 (1184)
37 2e7s_A RAB guanine nucleotide 88.3 0.79 2.7E-05 39.5 5.8 50 24-74 4-56 (135)
38 3s9g_A Protein hexim1; cyclin 88.3 2 6.9E-05 35.4 8.0 51 39-100 40-90 (104)
39 1gd2_E Transcription factor PA 88.2 1 3.4E-05 34.7 5.8 44 60-114 25-68 (70)
40 2q6q_A Spindle POLE BODY compo 87.6 3.8 0.00013 31.9 8.6 57 53-113 6-62 (74)
41 3jsv_C NF-kappa-B essential mo 87.5 2.5 8.6E-05 34.4 8.0 66 48-117 21-89 (94)
42 3na7_A HP0958; flagellar bioge 87.5 8.3 0.00029 34.9 12.5 31 97-127 144-174 (256)
43 3o0z_A RHO-associated protein 87.2 8.6 0.0003 34.1 12.0 50 47-96 66-125 (168)
44 3nmd_A CGMP dependent protein 87.1 2.2 7.6E-05 33.2 7.2 30 52-81 21-50 (72)
45 2xnx_M M protein, M1-BC1; cell 86.9 0.49 1.7E-05 41.3 3.7 38 85-122 97-134 (146)
46 1cii_A Colicin IA; bacteriocin 86.7 3.8 0.00013 41.9 10.5 64 50-113 349-415 (602)
47 3a7p_A Autophagy protein 16; c 86.6 8.1 0.00028 33.8 11.3 30 86-115 100-129 (152)
48 1x79_B RAB GTPase binding effe 86.1 2.1 7.2E-05 35.7 7.0 87 45-132 8-102 (112)
49 4fm3_A Uncharacterized hypothe 86.1 8 0.00027 31.6 10.3 87 26-112 5-94 (98)
50 3tnu_B Keratin, type II cytosk 86.1 13 0.00045 30.6 11.9 66 41-110 41-117 (129)
51 2v71_A Nuclear distribution pr 85.7 10 0.00036 34.0 11.9 28 101-128 86-113 (189)
52 3nmd_A CGMP dependent protein 85.2 3.2 0.00011 32.3 7.2 37 45-81 21-57 (72)
53 4etp_A Kinesin-like protein KA 84.3 2.5 8.5E-05 41.3 7.8 39 42-80 2-40 (403)
54 3tnu_A Keratin, type I cytoske 83.5 18 0.0006 29.9 11.6 67 41-111 43-120 (131)
55 3tnu_A Keratin, type I cytoske 83.5 12 0.00043 30.8 10.7 77 46-122 34-117 (131)
56 1go4_E MAD1 (mitotic arrest de 83.4 5.5 0.00019 32.6 8.3 23 86-108 72-94 (100)
57 3tnu_B Keratin, type II cytosk 82.9 18 0.00063 29.7 11.6 77 46-122 32-115 (129)
58 1ic2_A Tropomyosin alpha chain 82.4 7.6 0.00026 29.8 8.4 37 44-80 21-57 (81)
59 3ol1_A Vimentin; structural ge 81.5 20 0.00069 29.4 11.2 32 48-79 18-49 (119)
60 1gk4_A Vimentin; intermediate 81.2 17 0.00058 28.1 10.7 72 41-122 6-77 (84)
61 3qh9_A Liprin-beta-2; coiled-c 80.7 2.6 8.9E-05 33.5 5.2 24 50-73 54-77 (81)
62 4dci_A Uncharacterized protein 80.6 10 0.00035 33.0 9.4 64 62-129 27-103 (150)
63 1x4t_A Hypothetical protein LO 80.1 2 6.9E-05 34.8 4.5 49 61-109 29-79 (92)
64 2wt7_A Proto-oncogene protein 79.1 12 0.0004 27.5 8.1 33 86-118 27-59 (63)
65 2xdj_A Uncharacterized protein 78.8 9.2 0.00031 30.1 7.8 9 42-50 5-13 (83)
66 3mov_A Lamin-B1; LMNB1, B-type 78.5 7.9 0.00027 31.0 7.5 67 46-122 22-88 (95)
67 4ghu_A TNF receptor-associated 78.2 2.6 9E-05 36.9 5.1 33 46-78 3-35 (198)
68 2xdj_A Uncharacterized protein 77.7 19 0.00065 28.3 9.3 42 39-80 23-64 (83)
69 3mq7_A Bone marrow stromal ant 77.6 11 0.00039 31.8 8.4 33 66-102 73-105 (121)
70 2jee_A YIIU; FTSZ, septum, coi 76.8 26 0.00089 27.7 10.4 22 87-108 53-74 (81)
71 3q8t_A Beclin-1; autophagy, AT 76.6 27 0.00092 27.8 12.3 77 40-116 8-94 (96)
72 3he4_A Synzip6; heterodimeric 76.5 1.3 4.5E-05 32.3 2.1 29 86-114 28-56 (56)
73 1m1j_B Fibrinogen beta chain; 76.0 37 0.0013 34.2 13.2 72 55-127 126-199 (464)
74 1x8y_A Lamin A/C; structural p 75.7 24 0.00083 27.4 9.4 65 41-112 8-72 (86)
75 4afl_A P29ING4, inhibitor of g 75.6 27 0.00094 27.4 10.8 75 42-116 10-100 (104)
76 3mq9_A Bone marrow stromal ant 75.5 57 0.002 31.1 14.7 22 96-117 443-464 (471)
77 4aj5_1 SKA3, spindle and kinet 74.7 24 0.00083 29.0 9.4 69 46-118 16-96 (101)
78 1yf2_A Type I restriction-modi 73.1 5.2 0.00018 36.3 5.8 39 88-126 378-416 (425)
79 3m9b_A Proteasome-associated A 72.6 3.3 0.00011 38.8 4.4 36 82-117 54-89 (251)
80 3kqg_A Langerin, C-type lectin 72.1 5.8 0.0002 32.8 5.4 32 46-81 2-33 (182)
81 3s4r_A Vimentin; alpha-helix, 72.0 32 0.0011 27.2 9.4 59 46-110 33-91 (93)
82 3ghg_A Fibrinogen alpha chain; 71.9 22 0.00075 36.7 10.4 18 115-132 178-195 (562)
83 1l8d_A DNA double-strand break 71.7 34 0.0012 26.8 10.4 37 91-127 66-102 (112)
84 2jee_A YIIU; FTSZ, septum, coi 71.6 26 0.00089 27.7 8.6 30 87-116 32-61 (81)
85 3m91_A Proteasome-associated A 71.4 16 0.00053 26.5 6.8 35 63-101 15-49 (51)
86 1t2k_D Cyclic-AMP-dependent tr 71.1 27 0.00091 25.3 9.0 32 86-117 26-57 (61)
87 1ic2_A Tropomyosin alpha chain 70.7 33 0.0011 26.2 11.2 41 40-80 3-43 (81)
88 3cve_A Homer protein homolog 1 70.0 36 0.0012 26.3 10.1 46 55-104 5-50 (72)
89 1yf2_A Type I restriction-modi 69.9 6.8 0.00023 35.6 5.8 41 88-128 168-208 (425)
90 3swy_A Cyclic nucleotide-gated 69.7 22 0.00076 25.3 7.2 43 68-117 2-44 (46)
91 1ci6_A Transcription factor AT 69.3 11 0.00039 27.7 5.9 33 84-116 25-57 (63)
92 3u06_A Protein claret segregat 69.2 12 0.00042 36.7 7.8 34 46-79 6-39 (412)
93 2v66_B Nuclear distribution pr 68.4 50 0.0017 27.3 11.8 56 44-99 36-101 (111)
94 3e98_A GAF domain of unknown f 68.3 17 0.00059 33.2 8.1 95 15-131 33-134 (252)
95 1jnm_A Proto-oncogene C-JUN; B 68.2 6.3 0.00022 28.8 4.2 31 86-116 26-56 (62)
96 1lwu_C Fibrinogen gamma chain; 68.2 13 0.00046 35.6 7.6 41 41-81 3-43 (323)
97 1gd2_E Transcription factor PA 68.0 9.2 0.00031 29.3 5.2 32 45-76 31-62 (70)
98 1t2k_D Cyclic-AMP-dependent tr 67.8 19 0.00066 26.0 6.8 36 62-101 20-55 (61)
99 1hjb_A Ccaat/enhancer binding 67.4 22 0.00077 28.1 7.6 31 86-116 40-70 (87)
100 2oqq_A Transcription factor HY 67.3 19 0.00064 25.4 6.2 19 60-78 13-31 (42)
101 2gkw_A TNF receptor-associated 67.0 7.7 0.00027 33.4 5.3 33 46-78 3-35 (192)
102 2eqb_B RAB guanine nucleotide 66.6 28 0.00095 28.4 8.1 38 43-80 19-56 (97)
103 3u1c_A Tropomyosin alpha-1 cha 66.1 48 0.0017 26.4 10.9 30 86-115 34-63 (101)
104 2lw1_A ABC transporter ATP-bin 65.9 30 0.001 26.7 8.0 19 42-60 28-46 (89)
105 3bas_A Myosin heavy chain, str 64.9 47 0.0016 25.8 10.0 61 58-122 15-75 (89)
106 3he5_A Synzip1; heterodimeric 64.7 13 0.00046 26.3 5.1 35 43-77 10-44 (49)
107 3efg_A Protein SLYX homolog; x 64.4 27 0.00093 26.9 7.4 32 100-131 32-63 (78)
108 2hy6_A General control protein 64.4 8 0.00027 26.2 3.7 28 83-110 2-29 (34)
109 1ydx_A Type I restriction enzy 64.2 10 0.00034 35.0 5.8 41 87-127 353-393 (406)
110 3m0d_C TNF receptor-associated 63.8 24 0.00084 26.1 6.8 49 30-79 15-63 (65)
111 4fla_A Regulation of nuclear P 63.5 66 0.0023 27.6 10.4 60 47-114 83-142 (152)
112 4etp_A Kinesin-like protein KA 63.4 21 0.00071 34.8 8.1 27 52-78 5-31 (403)
113 3vkg_A Dynein heavy chain, cyt 63.2 36 0.0012 41.8 11.4 9 122-130 2078-2086(3245)
114 3m48_A General control protein 63.2 8.6 0.00029 25.9 3.7 27 83-109 1-27 (33)
115 3o0z_A RHO-associated protein 63.2 81 0.0028 27.9 13.1 37 45-81 43-79 (168)
116 1hjb_A Ccaat/enhancer binding 62.7 18 0.0006 28.8 6.1 28 34-61 34-61 (87)
117 3m0a_A TNF receptor-associated 62.7 33 0.0011 24.9 7.3 44 34-78 18-61 (66)
118 1x8y_A Lamin A/C; structural p 61.9 38 0.0013 26.3 7.9 25 50-74 3-27 (86)
119 3m91_A Proteasome-associated A 61.7 30 0.001 25.0 6.7 30 86-115 20-49 (51)
120 3swf_A CGMP-gated cation chann 61.5 34 0.0012 26.7 7.3 50 67-123 3-52 (74)
121 3oja_A Leucine-rich immune mol 60.7 55 0.0019 31.3 10.5 26 40-65 364-389 (487)
122 4emc_A Monopolin complex subun 60.6 24 0.00081 31.9 7.2 58 54-115 10-67 (190)
123 4b6x_A AVRRPS4, avirulence pro 60.5 36 0.0012 27.3 7.4 57 53-109 25-89 (90)
124 2ocy_A RAB guanine nucleotide 60.5 74 0.0025 27.7 10.2 71 27-102 19-92 (154)
125 1ydx_A Type I restriction enzy 60.1 13 0.00045 34.2 5.8 40 88-127 166-205 (406)
126 2wt7_A Proto-oncogene protein 60.0 35 0.0012 25.0 6.9 18 61-78 20-37 (63)
127 1d7m_A Cortexillin I; coiled-c 59.6 70 0.0024 26.0 12.7 43 35-77 17-59 (101)
128 3u59_A Tropomyosin beta chain; 59.2 64 0.0022 25.4 10.9 42 71-116 23-64 (101)
129 1uo4_A General control protein 58.7 12 0.0004 25.4 3.7 27 83-109 2-28 (34)
130 2eqb_B RAB guanine nucleotide 58.6 73 0.0025 25.9 11.6 52 48-103 10-61 (97)
131 2oxj_A Hybrid alpha/beta pepti 58.5 11 0.00039 25.5 3.6 27 83-109 2-28 (34)
132 3c3g_A Alpha/beta peptide with 58.5 11 0.00039 25.3 3.6 27 83-109 1-27 (33)
133 4dyl_A Tyrosine-protein kinase 58.3 48 0.0016 31.8 9.5 91 36-131 302-394 (406)
134 2p22_A Suppressor protein STP2 57.7 38 0.0013 30.0 8.0 32 266-299 141-172 (174)
135 3swk_A Vimentin; cytoskeleton, 57.3 66 0.0023 25.0 8.5 17 98-114 44-60 (86)
136 3c3f_A Alpha/beta peptide with 57.1 12 0.00042 25.2 3.6 27 83-109 2-28 (34)
137 1zxa_A CGMP-dependent protein 56.9 12 0.00042 28.6 4.1 27 51-77 26-52 (67)
138 2r2v_A GCN4 leucine zipper; co 56.6 13 0.00044 25.2 3.6 27 83-109 2-28 (34)
139 1gu4_A CAAT/enhancer binding p 56.4 34 0.0012 26.5 6.7 32 86-117 40-71 (78)
140 3htk_A Structural maintenance 56.1 50 0.0017 23.3 7.6 17 58-74 20-36 (60)
141 2ocy_A RAB guanine nucleotide 56.1 1E+02 0.0035 26.8 13.8 50 29-79 38-87 (154)
142 3efg_A Protein SLYX homolog; x 56.0 42 0.0014 25.9 7.1 48 65-116 15-62 (78)
143 2lw1_A ABC transporter ATP-bin 55.8 48 0.0017 25.5 7.5 25 57-81 22-46 (89)
144 3fpp_A Macrolide-specific effl 55.8 70 0.0024 28.9 9.8 15 46-60 72-86 (341)
145 2akf_A Coronin-1A; coiled coil 55.6 15 0.00052 24.3 3.8 25 93-117 3-27 (32)
146 2xv5_A Lamin-A/C; structural p 55.5 56 0.0019 25.0 7.7 52 64-122 5-56 (74)
147 3viq_B Mating-type switching p 55.3 27 0.00093 27.8 6.0 64 46-115 4-67 (85)
148 1deq_A Fibrinogen (alpha chain 54.8 84 0.0029 31.2 10.6 17 39-55 63-79 (390)
149 2oqq_A Transcription factor HY 54.6 22 0.00076 25.1 4.7 37 66-106 5-41 (42)
150 3ibp_A Chromosome partition pr 54.6 72 0.0025 30.7 9.9 36 273-309 245-293 (302)
151 4dk0_A Putative MACA; alpha-ha 54.6 45 0.0015 30.4 8.3 15 46-60 73-87 (369)
152 3k29_A Putative uncharacterize 53.9 1.2E+02 0.0041 26.9 13.5 99 22-120 2-130 (169)
153 1yke_B RNA polymerase II holoe 53.5 81 0.0028 27.0 9.2 38 72-113 93-130 (151)
154 1lwu_C Fibrinogen gamma chain; 53.5 20 0.00067 34.5 5.9 40 41-80 17-56 (323)
155 2w6a_A ARF GTPase-activating p 53.2 54 0.0019 24.8 7.0 34 84-117 22-55 (63)
156 1wlq_A Geminin; coiled-coil; 2 52.9 69 0.0024 25.5 7.9 52 56-108 30-81 (83)
157 1gu4_A CAAT/enhancer binding p 52.8 18 0.00063 28.1 4.6 26 35-60 35-60 (78)
158 3ghg_A Fibrinogen alpha chain; 52.5 68 0.0023 33.2 9.8 45 37-81 103-148 (562)
159 1kd8_A GABH AIV, GCN4 acid bas 52.1 15 0.00053 25.1 3.5 29 84-112 3-31 (36)
160 1jnm_A Proto-oncogene C-JUN; B 51.9 26 0.00087 25.5 5.0 36 62-108 20-55 (62)
161 2w83_C C-JUN-amino-terminal ki 51.9 32 0.0011 27.1 5.8 30 86-115 41-70 (77)
162 1fzc_C Fibrin; blood coagulati 51.9 13 0.00043 35.7 4.3 40 41-80 9-48 (319)
163 1ik9_A DNA repair protein XRCC 51.7 1.4E+02 0.0046 26.9 13.8 73 45-130 134-206 (213)
164 3u06_A Protein claret segregat 51.0 33 0.0011 33.6 7.1 47 86-132 14-60 (412)
165 1nfn_A Apolipoprotein E3; lipi 50.6 50 0.0017 29.0 7.6 32 98-129 134-166 (191)
166 2wvr_A Geminin; DNA replicatio 50.5 93 0.0032 28.5 9.5 53 56-109 107-159 (209)
167 2qyw_A Vesicle transport throu 50.3 93 0.0032 24.7 9.5 21 96-116 78-98 (102)
168 1ca9_A TRAF2, protein (TNF rec 49.9 21 0.00072 30.4 5.0 33 45-77 5-37 (192)
169 2b5u_A Colicin E3; high resolu 49.8 63 0.0022 33.3 9.1 53 42-95 313-365 (551)
170 1kd8_B GABH BLL, GCN4 acid bas 49.3 32 0.0011 23.5 4.7 12 44-55 2-13 (36)
171 2bni_A General control protein 49.1 21 0.0007 24.2 3.7 27 83-109 2-28 (34)
172 3rkg_A Magnesium transporter M 48.5 60 0.002 30.2 8.2 76 34-132 125-200 (261)
173 2wq1_A General control protein 48.3 21 0.00072 24.0 3.6 26 84-109 2-27 (33)
174 2yy0_A C-MYC-binding protein; 48.2 36 0.0012 24.5 5.2 28 50-77 19-46 (53)
175 1m1j_A Fibrinogen alpha subuni 48.1 2E+02 0.0069 29.3 12.3 26 56-81 92-117 (491)
176 2q12_A DIP13 alpha, DCC-intera 47.8 1.2E+02 0.0041 26.8 9.8 86 42-128 20-109 (265)
177 3he5_B Synzip2; heterodimeric 47.6 58 0.002 23.3 6.1 29 89-117 17-45 (52)
178 2xnx_M M protein, M1-BC1; cell 46.9 1.2E+02 0.0041 26.3 9.2 23 94-116 85-107 (146)
179 1dh3_A Transcription factor CR 46.8 77 0.0026 22.7 7.2 16 62-77 20-35 (55)
180 3k29_A Putative uncharacterize 46.8 1.6E+02 0.0053 26.2 11.9 80 47-126 75-159 (169)
181 2q13_A DCC-interacting protein 46.6 69 0.0023 30.0 8.4 83 41-127 19-108 (385)
182 3mud_A DNA repair protein XRCC 46.6 72 0.0025 28.4 8.0 51 51-108 122-172 (175)
183 4dac_A Computationally designe 45.9 15 0.0005 23.5 2.4 18 100-117 5-22 (28)
184 1kd8_A GABH AIV, GCN4 acid bas 45.6 41 0.0014 23.0 4.8 12 44-55 2-13 (36)
185 3ghg_B Fibrinogen beta chain; 45.4 1.5E+02 0.0053 29.9 11.0 87 41-127 93-194 (461)
186 4h8s_A DCC-interacting protein 45.3 52 0.0018 31.1 7.4 21 41-61 42-62 (407)
187 2aze_B Transcription factor E2 45.3 30 0.001 28.1 5.0 34 41-74 4-37 (106)
188 3oja_A Leucine-rich immune mol 45.2 2.1E+02 0.0072 27.3 12.0 53 56-108 416-468 (487)
189 1m1j_B Fibrinogen beta chain; 45.1 2.3E+02 0.0079 28.5 12.3 10 244-253 405-414 (464)
190 1ztm_A Fusion glycoprotein; fu 44.7 58 0.002 33.1 7.9 77 30-116 102-180 (490)
191 3thf_A Protein shroom; coiled- 44.4 1.4E+02 0.0047 27.0 9.5 56 66-122 72-127 (190)
192 1gqe_A Release factor 2, RF2; 44.3 2.2E+02 0.0075 27.8 11.7 87 31-117 13-115 (365)
193 1ci6_A Transcription factor AT 44.2 76 0.0026 23.2 6.6 36 62-101 21-56 (63)
194 1gk6_A Vimentin; intermediate 43.3 55 0.0019 23.7 5.6 39 68-110 4-42 (59)
195 1fmh_A General control protein 43.2 31 0.0011 22.7 3.8 20 59-78 10-29 (33)
196 1dh3_A Transcription factor CR 43.1 77 0.0026 22.7 6.3 28 85-112 25-52 (55)
197 2no2_A HIP-I, huntingtin-inter 43.1 1.3E+02 0.0045 24.3 13.6 21 57-77 22-42 (107)
198 4h22_A Leucine-rich repeat fli 43.1 1.4E+02 0.0047 24.6 8.8 42 70-115 36-77 (103)
199 3oa7_A Head morphogenesis prot 42.6 47 0.0016 30.3 6.2 55 61-119 27-81 (206)
200 2lyc_A Spindle and kinetochore 42.6 10 0.00036 32.1 1.9 48 276-326 21-68 (130)
201 2ke4_A CDC42-interacting prote 42.4 1.1E+02 0.0039 24.4 7.9 23 94-116 67-89 (98)
202 4b4t_K 26S protease regulatory 42.2 37 0.0013 33.3 6.0 41 66-117 44-84 (428)
203 2dgc_A Protein (GCN4); basic d 42.2 35 0.0012 25.2 4.5 17 61-77 27-43 (63)
204 3gp4_A Transcriptional regulat 42.2 1.4E+02 0.0049 24.5 9.1 13 27-39 43-55 (142)
205 1gk6_A Vimentin; intermediate 42.0 96 0.0033 22.4 7.1 40 42-81 6-45 (59)
206 2yy0_A C-MYC-binding protein; 41.8 19 0.00066 26.0 2.9 30 45-74 21-50 (53)
207 1t6f_A Geminin; coiled-coil, c 41.7 42 0.0014 23.0 4.4 26 51-76 8-33 (37)
208 4h22_A Leucine-rich repeat fli 41.7 1.2E+02 0.0041 24.9 8.0 25 51-75 31-55 (103)
209 1zhc_A Hypothetical protein HP 41.7 39 0.0013 25.7 4.8 59 55-114 8-69 (76)
210 1s94_A S-syntaxin; three helix 41.4 1.1E+02 0.0037 25.8 8.1 30 93-122 78-108 (180)
211 3rrk_A V-type ATPase 116 kDa s 41.3 1.1E+02 0.0038 28.2 8.8 52 65-120 227-279 (357)
212 3c9i_A Tail needle protein GP2 41.2 2.2E+02 0.0075 26.3 10.6 95 19-115 28-145 (242)
213 2dq0_A Seryl-tRNA synthetase; 41.1 1.3E+02 0.0046 29.6 9.8 41 89-129 69-109 (455)
214 3mov_A Lamin-B1; LMNB1, B-type 40.8 55 0.0019 26.0 5.8 29 94-122 49-77 (95)
215 1ez3_A Syntaxin-1A; three heli 40.6 97 0.0033 24.3 7.3 30 94-123 48-78 (127)
216 3q8t_A Beclin-1; autophagy, AT 40.5 1.3E+02 0.0046 23.7 11.7 24 92-115 28-51 (96)
217 2w6b_A RHO guanine nucleotide 40.2 1.1E+02 0.0038 22.7 6.9 40 87-126 15-54 (56)
218 3qne_A Seryl-tRNA synthetase, 40.2 1.4E+02 0.0047 30.1 9.8 78 43-128 33-110 (485)
219 3d5a_X RF1, peptide chain rele 39.9 1.6E+02 0.0054 28.7 9.9 82 44-125 4-99 (354)
220 1m1j_C Fibrinogen gamma chain; 39.9 2.1E+02 0.0072 28.2 10.9 31 41-71 36-66 (409)
221 2wt7_B Transcription factor MA 39.8 79 0.0027 25.3 6.5 36 64-103 48-83 (90)
222 2dq0_A Seryl-tRNA synthetase; 39.3 97 0.0033 30.6 8.5 34 98-131 71-104 (455)
223 1ik9_A DNA repair protein XRCC 39.3 2.1E+02 0.0073 25.6 11.9 88 24-112 117-209 (213)
224 2cly_A ATP synthase B chain, m 39.0 2.2E+02 0.0076 25.8 10.8 73 48-120 82-166 (214)
225 2avr_X Adhesion A; antiparalle 39.0 1.7E+02 0.0059 24.5 11.2 23 40-62 6-28 (119)
226 4e61_A Protein BIM1; EB1-like 38.9 1.6E+02 0.0056 24.2 9.6 44 46-89 7-53 (106)
227 2jrf_A Tubulin polymerization- 38.6 22 0.00075 31.8 3.4 35 274-308 59-97 (184)
228 1ykh_B RNA polymerase II holoe 38.6 1.2E+02 0.0042 25.2 7.9 78 28-113 53-130 (132)
229 1m1j_C Fibrinogen gamma chain; 38.5 2.4E+02 0.0082 27.8 11.1 10 244-253 333-342 (409)
230 2no2_A HIP-I, huntingtin-inter 38.5 1.6E+02 0.0054 23.9 13.5 88 29-124 16-103 (107)
231 3m48_A General control protein 38.4 42 0.0014 22.6 3.9 12 44-55 1-12 (33)
232 4adz_A CSOR; transcription, co 38.3 1.7E+02 0.0057 25.1 8.7 53 38-91 51-111 (136)
233 1wle_A Seryl-tRNA synthetase; 38.1 1.1E+02 0.0036 30.9 8.7 40 90-129 117-156 (501)
234 2ve7_A Kinetochore protein HEC 38.1 62 0.0021 30.4 6.6 44 37-80 151-201 (315)
235 1pul_A Hypothetical protein C3 38.0 30 0.001 29.1 4.0 30 279-308 79-110 (125)
236 1wt6_A Myotonin-protein kinase 37.8 1.5E+02 0.0051 23.4 9.1 55 45-107 16-70 (81)
237 1kd8_B GABH BLL, GCN4 acid bas 37.8 48 0.0016 22.7 4.1 28 83-110 2-29 (36)
238 1fxk_C Protein (prefoldin); ar 37.6 73 0.0025 25.6 6.2 39 41-79 93-131 (133)
239 3swk_A Vimentin; cytoskeleton, 37.5 58 0.002 25.3 5.3 9 48-56 19-27 (86)
240 1zme_C Proline utilization tra 37.4 12 0.00042 26.6 1.3 22 40-61 48-69 (70)
241 3qwe_A GMIP, GEM-interacting p 36.8 1.7E+02 0.0057 27.5 9.3 64 59-124 172-235 (279)
242 1ez3_A Syntaxin-1A; three heli 36.8 1.5E+02 0.0052 23.2 8.1 20 41-60 10-29 (127)
243 1nkp_B MAX protein, MYC proto- 36.5 46 0.0016 25.1 4.5 59 16-76 22-80 (83)
244 2vrs_A Sigma-C capsid protein; 36.4 42 0.0014 30.8 4.9 29 88-116 10-38 (211)
245 3mtu_E Head morphogenesis prot 36.4 1.5E+02 0.0052 23.2 7.8 45 61-108 27-74 (77)
246 2aze_A Transcription factor DP 36.4 1.1E+02 0.0039 26.6 7.5 35 43-77 5-39 (155)
247 1no4_A Late, head morphogenesi 36.2 1.6E+02 0.0056 23.4 8.0 50 60-113 22-71 (97)
248 2dgc_A Protein (GCN4); basic d 36.2 52 0.0018 24.3 4.6 31 82-112 30-60 (63)
249 3v1a_A Computational design, M 36.1 47 0.0016 23.9 4.2 29 271-299 14-42 (48)
250 1wlo_A SUFE protein; structura 36.0 20 0.00067 30.2 2.5 46 11-61 87-132 (136)
251 1ni7_A ER75, hypothetical prot 35.9 6.8 0.00023 34.0 -0.3 50 11-64 100-149 (155)
252 3okg_A Restriction endonucleas 35.6 56 0.0019 29.6 5.8 38 89-126 366-407 (412)
253 3okg_A Restriction endonucleas 35.3 58 0.002 29.6 5.8 7 266-272 348-354 (412)
254 1wle_A Seryl-tRNA synthetase; 34.9 2.7E+02 0.0093 27.9 11.1 36 97-132 117-152 (501)
255 1f5n_A Interferon-induced guan 34.6 1.1E+02 0.0039 31.2 8.4 22 59-80 482-503 (592)
256 2zxx_A Geminin; coiled-coil, c 34.2 91 0.0031 24.5 5.9 20 61-80 31-50 (79)
257 3etw_A Adhesin A; antiparallel 34.1 2.1E+02 0.007 23.9 12.9 20 39-58 5-24 (119)
258 1uii_A Geminin; human, DNA rep 34.0 79 0.0027 25.1 5.5 20 86-105 43-62 (83)
259 1ytz_T Troponin T; muscle, THI 33.8 63 0.0022 26.4 5.2 35 42-76 55-89 (107)
260 1t6f_A Geminin; coiled-coil, c 33.8 91 0.0031 21.4 5.0 16 85-100 3-18 (37)
261 1pcf_A P15, transcriptional co 33.3 25 0.00085 26.6 2.5 19 280-298 43-61 (66)
262 2rr9_C Putative uncharacterize 33.0 95 0.0033 22.0 5.2 10 27-36 4-13 (46)
263 1joc_A EEA1, early endosomal a 32.9 1.2E+02 0.0042 24.7 6.9 25 40-64 8-32 (125)
264 3ghg_C Fibrinogen gamma chain; 32.7 1.2E+02 0.004 30.2 7.9 33 41-73 36-68 (411)
265 3mq7_A Bone marrow stromal ant 32.5 2.3E+02 0.0077 23.9 11.5 71 48-121 30-100 (121)
266 3bbp_D GRIP and coiled-coil do 32.3 31 0.0011 26.7 2.9 32 82-113 36-67 (71)
267 1wlm_A Protein CGI-38; structu 32.1 25 0.00084 30.4 2.6 30 279-308 75-104 (151)
268 3s9g_A Protein hexim1; cyclin 32.1 2.1E+02 0.0073 23.5 8.7 41 82-122 44-84 (104)
269 1bg1_A Protein (transcription 31.9 1.5E+02 0.0053 30.8 8.8 39 42-80 12-50 (596)
270 2c5k_T Syntaxin TLG1, T-snare 31.6 1.9E+02 0.0065 22.8 7.7 22 60-81 39-60 (95)
271 2dq3_A Seryl-tRNA synthetase; 31.2 88 0.003 30.5 6.7 68 55-122 4-84 (425)
272 1wlq_A Geminin; coiled-coil; 2 30.9 83 0.0029 25.0 5.2 25 86-110 35-59 (83)
273 3sjb_C Golgi to ER traffic pro 30.9 1.7E+02 0.0057 23.7 7.0 19 91-109 69-87 (93)
274 3jsv_C NF-kappa-B essential mo 30.8 2E+02 0.0068 23.3 7.5 12 62-73 21-32 (94)
275 1lq7_A Alpha3W; three helix bu 30.6 45 0.0015 24.9 3.4 35 43-77 2-38 (67)
276 2yko_A LINE-1 ORF1P; RNA-bindi 30.5 78 0.0027 29.3 5.7 35 42-76 5-39 (233)
277 2zdi_C Prefoldin subunit alpha 30.3 57 0.0019 27.1 4.5 38 41-78 103-140 (151)
278 2wq1_A General control protein 30.1 75 0.0026 21.3 4.0 12 44-55 1-12 (33)
279 3m0a_A TNF receptor-associated 29.8 1.6E+02 0.0053 21.2 9.4 59 48-110 3-61 (66)
280 2xv5_A Lamin-A/C; structural p 29.7 1.9E+02 0.0064 22.1 8.0 27 48-74 3-29 (74)
281 3plt_A Sphingolipid long chain 29.5 3.4E+02 0.012 25.0 11.1 41 41-81 67-107 (234)
282 1hx1_B BAG-1, BAG-family molec 29.4 76 0.0026 26.6 5.0 77 39-128 21-97 (114)
283 3ra3_B P2F; coiled coil domain 29.4 43 0.0015 21.4 2.7 24 53-76 3-26 (28)
284 3mq9_A Bone marrow stromal ant 29.2 3.7E+02 0.013 25.4 13.6 18 64-81 397-414 (471)
285 2pms_C Pneumococcal surface pr 29.1 76 0.0026 26.9 5.0 25 92-116 64-88 (125)
286 3t97_B Nuclear pore complex pr 29.0 1.9E+02 0.0065 21.9 8.1 47 42-92 9-55 (65)
287 2ve7_C Kinetochore protein NUF 28.4 34 0.0012 31.4 3.0 28 86-113 152-179 (250)
288 1gmj_A ATPase inhibitor; coile 28.3 2.2E+02 0.0076 22.5 9.2 15 37-51 18-32 (84)
289 1j1d_B Troponin T, TNT; THIN f 28.1 67 0.0023 26.3 4.4 6 72-77 57-62 (106)
290 1zxa_A CGMP-dependent protein 28.1 1E+02 0.0034 23.5 5.1 28 53-80 14-41 (67)
291 1x79_B RAB GTPase binding effe 28.0 2.6E+02 0.0088 23.1 12.5 56 51-113 46-101 (112)
292 2oxj_A Hybrid alpha/beta pepti 27.8 1E+02 0.0036 20.8 4.5 16 86-101 12-27 (34)
293 1gqe_A Release factor 2, RF2; 27.8 2.5E+02 0.0086 27.4 9.1 34 43-81 9-42 (365)
294 2wuj_A Septum site-determining 27.6 50 0.0017 23.8 3.2 25 86-110 31-55 (57)
295 2dnx_A Syntaxin-12; snare, HAB 27.6 2.5E+02 0.0086 22.9 12.9 86 30-116 13-118 (130)
296 3a1q_C Ubiquitin interaction m 27.5 1.4E+02 0.0047 21.1 5.2 9 27-35 7-15 (45)
297 3tul_A Cell invasion protein S 27.3 1.8E+02 0.006 25.6 7.1 21 61-81 73-93 (158)
298 2efr_A General control protein 27.3 3E+02 0.01 23.7 12.1 58 43-104 42-113 (155)
299 1d7m_A Cortexillin I; coiled-c 27.2 2.5E+02 0.0086 22.8 8.2 14 40-53 5-18 (101)
300 1j1d_C Troponin I, TNI; THIN f 27.2 1.1E+02 0.0037 26.0 5.7 38 41-78 70-107 (133)
301 3m0d_C TNF receptor-associated 26.9 1.9E+02 0.0064 21.2 9.0 17 62-78 4-20 (65)
302 1urq_A M-tomosyn isoform; tran 26.8 1.9E+02 0.0065 21.3 8.0 39 41-79 9-47 (63)
303 3tq2_A KE1; parallel three hel 26.7 1.4E+02 0.0047 20.0 4.9 31 45-75 3-33 (36)
304 3qh9_A Liprin-beta-2; coiled-c 26.7 2.4E+02 0.0081 22.3 8.0 32 65-96 27-61 (81)
305 1s21_A ORF2; predominantly bet 26.6 40 0.0014 30.8 3.0 47 209-291 8-56 (206)
306 3cl3_D NF-kappa-B essential mo 26.2 25 0.00087 30.0 1.6 11 92-102 76-86 (130)
307 3lss_A Seryl-tRNA synthetase; 26.2 1E+02 0.0036 30.9 6.3 27 102-128 109-136 (484)
308 1z0k_B FYVE-finger-containing 26.2 79 0.0027 24.3 4.2 29 271-299 33-61 (69)
309 2k48_A Nucleoprotein; viral pr 26.0 2.8E+02 0.0096 22.9 7.8 24 66-89 37-63 (107)
310 1vcs_A Vesicle transport throu 25.8 2.4E+02 0.0083 22.1 7.5 54 60-117 34-88 (102)
311 1uo4_A General control protein 25.8 95 0.0033 21.0 4.0 12 44-55 2-13 (34)
312 2ke4_A CDC42-interacting prote 25.7 2.4E+02 0.0081 22.5 7.2 31 92-122 58-88 (98)
313 3fpp_A Macrolide-specific effl 25.7 2.4E+02 0.0082 25.3 8.1 11 50-60 69-79 (341)
314 4e61_A Protein BIM1; EB1-like 25.7 1.6E+02 0.0054 24.2 6.2 26 53-78 7-32 (106)
315 3ter_A Mammalian stromal inter 25.7 89 0.003 26.8 4.9 29 82-110 59-87 (136)
316 2y7c_A Type-1 restriction enzy 25.6 1.1E+02 0.0036 28.1 5.8 21 106-126 184-204 (464)
317 3iox_A AGI/II, PA; alpha helix 25.6 5.5E+02 0.019 26.2 12.1 74 49-122 8-82 (497)
318 2yo3_A General control protein 25.2 1.3E+02 0.0043 28.5 6.2 39 43-81 216-254 (268)
319 3g0m_A Cysteine desulfuration 25.2 19 0.00064 30.6 0.6 46 11-60 93-138 (141)
320 3cl3_D NF-kappa-B essential mo 25.1 1.4E+02 0.0048 25.5 5.9 66 40-113 34-100 (130)
321 3lss_A Seryl-tRNA synthetase; 25.0 5.3E+02 0.018 25.8 11.6 88 42-129 36-144 (484)
322 2qyw_A Vesicle transport throu 24.9 2.6E+02 0.0087 22.1 9.1 76 41-122 13-94 (102)
323 1zbt_A RF-1, peptide chain rel 24.7 1.1E+02 0.0036 30.2 5.8 24 100-123 91-115 (371)
324 2zvf_A Alanyl-tRNA synthetase; 24.6 93 0.0032 25.7 4.8 31 86-116 29-59 (171)
325 2i1j_A Moesin; FERM, coiled-co 24.5 41 0.0014 34.2 3.0 18 298-315 533-550 (575)
326 3fx0_A NF-kappa-B essential mo 24.5 50 0.0017 26.9 2.9 55 49-107 37-94 (96)
327 1r73_A TM1492, 50S ribosomal p 24.5 1.1E+02 0.0038 22.7 4.7 47 66-120 11-58 (66)
328 1y1u_A Signal transducer and a 24.1 4.6E+02 0.016 27.1 10.7 46 36-81 5-50 (585)
329 2j5u_A MREC protein; bacterial 24.1 38 0.0013 30.9 2.5 26 86-111 23-48 (255)
330 2v0o_A FCHO2, FCH domain only 24.1 3.5E+02 0.012 23.4 13.8 33 98-130 176-208 (276)
331 1ses_A Seryl-tRNA synthetase; 24.0 3.1E+02 0.011 26.6 9.1 41 89-129 64-104 (421)
332 3rmi_A Chorismate mutase prote 23.9 2.2E+02 0.0074 22.9 6.7 19 51-69 13-31 (114)
333 2d4y_A HAP1, flagellar HOOK-as 23.7 2.9E+02 0.01 26.7 8.8 21 39-59 74-94 (463)
334 2vkl_A RV0948C/MT0975; helical 23.4 1.7E+02 0.0057 22.7 5.7 16 66-81 14-29 (90)
335 1gk4_A Vimentin; intermediate 23.4 2.5E+02 0.0084 21.4 10.2 36 87-122 31-66 (84)
336 2oto_A M protein; helical coil 23.4 3.2E+02 0.011 22.7 12.5 39 40-78 26-64 (155)
337 1nkp_A C-MYC, MYC proto-oncoge 23.2 2E+02 0.0068 22.2 6.1 19 90-108 67-85 (88)
338 1avy_A Fibritin, gpwac M; bact 23.0 1.4E+02 0.0049 23.2 5.1 34 43-76 8-41 (74)
339 3frt_A Charged multivesicular 23.0 1.1E+02 0.0038 27.7 5.3 19 104-122 55-73 (218)
340 2ve7_A Kinetochore protein HEC 22.9 1.4E+02 0.0048 28.0 6.2 21 49-69 184-204 (315)
341 2xus_A Breast cancer metastasi 22.8 1.2E+02 0.0042 21.8 4.4 29 44-81 14-42 (49)
342 4ad8_A DNA repair protein RECN 22.8 2E+02 0.0068 28.0 7.5 8 25-32 162-169 (517)
343 1yzm_A FYVE-finger-containing 22.8 1.1E+02 0.0038 22.2 4.2 29 271-299 15-43 (51)
344 2fcw_A Alpha-2-macroglobulin r 22.7 3.3E+02 0.011 22.5 11.6 31 94-124 72-103 (109)
345 2zxx_A Geminin; coiled-coil, c 22.6 2.8E+02 0.0095 21.7 7.9 23 86-108 31-53 (79)
346 3a5t_A Transcription factor MA 22.6 8.1 0.00028 31.9 -2.1 21 10-30 4-24 (107)
347 3c3f_A Alpha/beta peptide with 22.5 1.2E+02 0.0042 20.4 4.0 8 44-51 2-9 (34)
348 2y7c_A Type-1 restriction enzy 22.4 1.3E+02 0.0045 27.5 5.8 20 107-126 398-417 (464)
349 2er8_A Regulatory protein Leu3 22.1 79 0.0027 22.5 3.4 18 64-81 49-66 (72)
350 3iz5_c 60S ribosomal protein L 21.9 2.2E+02 0.0074 23.9 6.5 47 66-120 16-63 (124)
351 3kpe_A Fusion glycoprotein F0; 21.8 2.3E+02 0.0079 20.5 7.0 35 47-81 1-35 (51)
352 1uii_A Geminin; human, DNA rep 21.7 2.7E+02 0.0093 22.0 6.6 37 58-105 40-76 (83)
353 3iv1_A Tumor susceptibility ge 21.5 2.9E+02 0.01 21.5 9.8 58 54-115 15-72 (78)
354 2e7s_A RAB guanine nucleotide 21.4 3.8E+02 0.013 22.8 8.9 40 41-80 37-76 (135)
355 1bf5_A Signal transducer and a 21.4 4.8E+02 0.016 27.0 10.1 32 41-72 14-45 (575)
356 2lf0_A Uncharacterized protein 21.4 2.2E+02 0.0076 24.0 6.4 51 65-115 11-70 (123)
357 2d8d_A Aroag, phospho-2-dehydr 21.3 2E+02 0.0068 21.7 5.7 16 66-81 5-20 (90)
358 3viq_A SWI5-dependent recombin 21.1 1.1E+02 0.0039 25.4 4.6 12 69-80 12-23 (122)
359 1f5n_A Interferon-induced guan 21.1 4.9E+02 0.017 26.6 10.2 14 102-115 566-579 (592)
360 3nr7_A DNA-binding protein H-N 20.9 3E+02 0.01 21.5 7.0 38 32-69 13-50 (86)
361 1nlw_A MAD protein, MAX dimeri 20.9 2E+02 0.0068 21.9 5.6 39 59-108 42-80 (80)
362 4hpq_C ATG17, KLTH0D15642P; au 20.7 6.1E+02 0.021 24.9 10.9 27 54-80 239-265 (413)
363 3trt_A Vimentin; cytoskeleton, 20.7 2.5E+02 0.0087 20.5 6.6 41 41-81 33-73 (77)
364 3q4f_C DNA repair protein XRCC 20.7 1.3E+02 0.0043 27.2 5.0 22 82-103 161-182 (186)
365 2oa5_A Hypothetical protein BQ 20.6 2.5E+02 0.0085 23.3 6.4 19 42-60 14-32 (110)
366 2l5g_B Putative uncharacterize 20.5 2.3E+02 0.0078 19.9 5.3 20 59-78 18-37 (42)
367 2l2l_A Transcriptional repress 20.5 1.8E+02 0.0061 20.5 4.7 30 59-88 3-34 (43)
368 2wg5_A General control protein 20.4 93 0.0032 25.0 3.8 18 92-109 17-34 (109)
369 1ybz_A Chorismate mutase; cons 20.3 2.1E+02 0.0071 22.3 5.7 16 66-81 19-34 (91)
370 2zdi_C Prefoldin subunit alpha 20.3 3.6E+02 0.012 22.1 8.0 38 92-129 101-138 (151)
371 2bzb_A Conserved domain protei 20.2 67 0.0023 23.9 2.7 30 87-116 27-56 (62)
372 3swf_A CGMP-gated cation chann 20.1 2.6E+02 0.0089 21.7 6.1 38 42-79 6-47 (74)
373 3a7o_A Autophagy protein 16; c 20.1 3.1E+02 0.011 21.3 8.6 41 37-77 19-59 (75)
374 4hpq_C ATG17, KLTH0D15642P; au 20.0 6.3E+02 0.022 24.8 11.5 59 53-115 311-369 (413)
No 1
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=97.92 E-value=3e-05 Score=60.39 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=61.3
Q ss_pred CccchHHHHHHHHhcC-CHHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChhHHHHHHHhhcc
Q 019884 266 TRVDGKEFFRQVRNRL-SYEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKDLYTIFEGLITR 331 (334)
Q Consensus 266 ~rVDGKEFFRQARsRL-SYEQFsaFLANIKELNAhkQTREETL~KA~eIFG~~NkdLY~~FegLL~R 331 (334)
...|.-.||.+||.|| +-+-|..||--++-+|.+.-+|.|.+..+..+|| .|+||+..|..+|..
T Consensus 7 ~~~de~~Ff~kVK~~l~~~~~Y~eFLk~lnlf~q~~Id~~eLv~~V~~~lg-~~pdL~~~Fk~Fl~~ 72 (75)
T 2ld7_B 7 GVGTESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLG-KFPELFNWFKNFLGY 72 (75)
T ss_dssp TSSHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHT-TCHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcCHHHHHHHHHHHHc-cCHHHHHHHHHHcCC
Confidence 6679999999999999 8899999999999999999999999999999999 599999999999864
No 2
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=97.36 E-value=0.00068 Score=53.07 Aligned_cols=65 Identities=22% Similarity=0.387 Sum_probs=60.2
Q ss_pred CccchHHHHHHHHhcCC--HHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChhHHHHHHHhhcc
Q 019884 266 TRVDGKEFFRQVRNRLS--YEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKDLYTIFEGLITR 331 (334)
Q Consensus 266 ~rVDGKEFFRQARsRLS--YEQFsaFLANIKELNAhkQTREETL~KA~eIFG~~NkdLY~~FegLL~R 331 (334)
+--|...|.+++|.|+. .+-|..||.-+|.+-+++.+..+....+.++|. +|+||...|...|-.
T Consensus 9 ~~~dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~-~hpdLi~gFn~FLP~ 75 (80)
T 2cr7_A 9 HVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFH-EHPDLIVGFNAFLPS 75 (80)
T ss_dssp CSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGG-GCHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc-CCHHHHHHHHHHCcC
Confidence 66789999999999997 699999999999999999999999999999999 689999999988753
No 3
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=96.98 E-value=0.0018 Score=50.28 Aligned_cols=62 Identities=23% Similarity=0.417 Sum_probs=57.4
Q ss_pred chHHHHHHHHhcCC--HHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChhHHHHHHHhhcc
Q 019884 269 DGKEFFRQVRNRLS--YEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKDLYTIFEGLITR 331 (334)
Q Consensus 269 DGKEFFRQARsRLS--YEQFsaFLANIKELNAhkQTREETL~KA~eIFG~~NkdLY~~FegLL~R 331 (334)
|...|.+++|.|+. .+-|..||.-+|.+-+++.+..+..+.+.++|. +|+||...|...|-.
T Consensus 6 dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~-~hpdLi~gFn~FLP~ 69 (77)
T 2czy_A 6 DALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFH-EHPDLIVGFNAFLPL 69 (77)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTT-TCHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHHHHHCCC
Confidence 77899999999996 689999999999999999999999999999999 589999999887754
No 4
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.70 E-value=0.02 Score=48.95 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
++++=|+.-.-++..+...|++++.+++..|++|...+.++...+. .+..++.+|.+|++.|...+++|.
T Consensus 61 LaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e----~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 61 MMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAE----SSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666688888899999999999999999999999999888776554 888888888888888888777775
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.25 E-value=0.1 Score=44.09 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=22.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
+|..+|..|+.++..+..++.+-...+..++.++..++..+.
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 44 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELV 44 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555554444443
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.62 E-value=0.1 Score=56.98 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=36.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----H
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE-----V 117 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE-----~ 117 (334)
.+|..||.|+..|+.++.+-.....+|++++..+...|+.++. .|.+||..|-.++-.|+.++.+.+ .
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~-------~L~~e~~~L~qq~~~l~~~~~~~~~~~~~~ 1056 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS-------ELKEQNTLLKTEKEELNRRIHDQAKEITET 1056 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555544443333 444444445555555554444443 3
Q ss_pred HHHHH
Q 019884 118 FRKTL 122 (334)
Q Consensus 118 FKk~L 122 (334)
+|..+
T Consensus 1057 ~~~~~ 1061 (1080)
T 2dfs_A 1057 MEKKL 1061 (1080)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 7
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.53 E-value=0.21 Score=40.35 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=57.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
.+.-|+..+|.++..+.+....++..|..|+.|+..+|..|- .+|..+.+....-.+-...--..|.-|||-|.=||
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345688889999999999999999999999999999999886 55555544433333333334458888998887665
No 8
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.14 Score=44.96 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=51.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN-TVRKLQRDVSKL 115 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~-TvKKL~RDvaKL 115 (334)
.+.+-...|+.++..|...+.+|...+..|++-+..|..++. .+++...+|.+||+.|.. -+++-++|..+|
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n----~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~M 144 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN----VLQQKLSDLKKEHSQLVARWLKKTEKETEAM 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666777777777777777776655 889999999999988875 467777777665
No 9
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=95.22 E-value=0.057 Score=42.53 Aligned_cols=64 Identities=16% Similarity=0.352 Sum_probs=56.0
Q ss_pred CccchHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcc----------ccHHHHHHhhhhhcCCCChhHHHHHHHhhc
Q 019884 266 TRVDGKEFFRQVRNRL--SYEQFAIFLANVKELNAHK----------QTKEETLRKTDEVFGPENKDLYTIFEGLIT 330 (334)
Q Consensus 266 ~rVDGKEFFRQARsRL--SYEQFsaFLANIKELNAhk----------QTREETL~KA~eIFG~~NkdLY~~FegLL~ 330 (334)
+--|...|.+++|+|+ -.+-|.+||.-++.+=+++ .|..|....+.++|.. |.||...|...|-
T Consensus 6 ~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~-hpDLl~~F~~FLP 81 (85)
T 1e91_A 6 EFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRG-QEDLLSEFGQFLP 81 (85)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSS-CHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHHcc-CHHHHHHHHHHCc
Confidence 3447889999999999 4699999999999998887 4789999999999996 8999999988774
No 10
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=95.09 E-value=0.038 Score=43.92 Aligned_cols=63 Identities=14% Similarity=0.369 Sum_probs=54.1
Q ss_pred CccchHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcccc-------------HHHHHHhhhhhcCCCChhHHHHHHHhh
Q 019884 266 TRVDGKEFFRQVRNRL--SYEQFAIFLANVKELNAHKQT-------------KEETLRKTDEVFGPENKDLYTIFEGLI 329 (334)
Q Consensus 266 ~rVDGKEFFRQARsRL--SYEQFsaFLANIKELNAhkQT-------------REETL~KA~eIFG~~NkdLY~~FegLL 329 (334)
+--|...|.+.+|+|. -.|-|.+||.-.+.+-.++.+ .+|......++|. +|.||...|...|
T Consensus 9 ~~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~-~h~DLl~~F~~FL 86 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFK-NQEDLLSEFGQFL 86 (89)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTT-TCHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHc-cCHHHHHHHHHHC
Confidence 5568899999999999 588999999999988765433 4899999999999 6899999998776
No 11
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=94.66 E-value=0.35 Score=40.41 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 49 ESEHSALRSQLAEKDS---RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 49 E~E~~~LR~~laEKd~---~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
..++..|++.++.++. .|.-|+.++.-.... ...=..+-++|+.|+..|...+..|+|.+.+|+
T Consensus 44 q~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~D----F~aERadREkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 44 QELIDKLKEEAEQHKIVMETVPVLKAQADIYKAD----FQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HccchhhHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 3455555555555444 333344343333322 234456668999999999999999999998873
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.62 E-value=0.033 Score=60.79 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=27.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
...+||.++..|.++|.++.+...+|++++..++..+. ..|...+++.+++.+|+..+.+.|+.|..++++|+
T Consensus 922 ~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~ 997 (1080)
T 2dfs_A 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997 (1080)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888877776666555 55655566666666666666666666666655543
No 13
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.54 E-value=0.49 Score=37.93 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=57.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
...-|+..+|.++..+......++..|..|+.|+..++..|- .+|..+.+....-.+....--..|.-|||-+.=||
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345688888999999999999999999999999999998886 56655554444444444444567888888776554
No 14
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=93.93 E-value=0.15 Score=41.85 Aligned_cols=65 Identities=15% Similarity=0.345 Sum_probs=55.6
Q ss_pred CccchHHHHHHHHhcC--CHHHHHHHHHHHHHHhhccc----------cHHHHHHhhhhhcCCCChhHHHHHHHhhcc
Q 019884 266 TRVDGKEFFRQVRNRL--SYEQFAIFLANVKELNAHKQ----------TKEETLRKTDEVFGPENKDLYTIFEGLITR 331 (334)
Q Consensus 266 ~rVDGKEFFRQARsRL--SYEQFsaFLANIKELNAhkQ----------TREETL~KA~eIFG~~NkdLY~~FegLL~R 331 (334)
+--|...|.+.+|+|. -++-|..||.-.+.+=+++. |-.|......++|.. |.||...|...|-.
T Consensus 6 ~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~-hpDLl~eFn~FLP~ 82 (105)
T 2f05_A 6 EFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRG-QEDLLSEFGQFLPE 82 (105)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTT-CHHHHHHHHHHSCG
T ss_pred cHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccccccCcHHHHHHHHHHHHcc-CHHHHHHHHHHCCC
Confidence 3447889999999999 56999999999999987763 568999999999986 89999999887743
No 15
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=93.41 E-value=1 Score=35.54 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=58.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
+..++.|+..|+.++..-.....+|+.++..|...-. ..|..+.+...+|.+.+..|-..++.|+-.|
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999888888999998888877655 4488999999999999999999999887655
No 16
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=93.03 E-value=0.066 Score=50.25 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=28.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEK---DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEK---d~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
+..|..|+.|+..||.+|.+- .+.... ++|+..|+.++. .....|++|..+...|-..+.+|..+|.+|
T Consensus 23 ~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~----~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 23 AAELEQLRREAAVLREQLENAVGSHAPTRS-ARDIHQLEARID----SLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp -----------------------------C-CHHHHHHHHHHH----HHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhcccCcccchh-hhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777888999999888655 444333 455555555554 555566667777777777777777777776
No 17
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=92.38 E-value=0.69 Score=36.50 Aligned_cols=56 Identities=25% Similarity=0.395 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV 105 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~Tv 105 (334)
+.||+|...+-++|.+-.....+|+++|..|+..|. .+..++..+..|-..|..+.
T Consensus 2 ~~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le----~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDLETRNAELEHQLRAMERSLE----EARAERERARAEVGRAAQLL 57 (79)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999999999998777 88888888877777666553
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.36 E-value=2 Score=38.69 Aligned_cols=45 Identities=27% Similarity=0.309 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (334)
...++...|.+++..|...+.+|--.-+-||.=.|.+.-||.|-+
T Consensus 92 ~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e 136 (189)
T 2v71_A 92 VLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFE 136 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Confidence 334445555666666666666666666666666666666666543
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.31 E-value=0.67 Score=45.52 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019884 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (334)
++.++|.+.-+.--..++.|.++++++..=.|+|++-+++.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444444444577777788777766666776666543
No 20
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=92.03 E-value=0.92 Score=38.05 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=37.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEAL 101 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sL 101 (334)
-|..|=.|+..| ..|-.+.|.+|+.+|..||.+|. .-...|..|+..|-.|...|
T Consensus 23 eie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 23 EISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 45889999999999999999998 22345666666666665543
No 21
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=91.99 E-value=0.94 Score=35.40 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=43.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
--+.|+.-+..||..|.+||..|..|++.+.---.. .....||..-|.=||+-|..-..+|
T Consensus 12 ~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd----~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 12 HDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKN----TERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----HHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 334566678999999999999999999876532222 2356677788888888776655444
No 22
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.96 E-value=3.1 Score=34.47 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 83 KLGQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
-+..+.+...+|...+..|-..++-|..++
T Consensus 63 ~l~e~EE~~~~L~~~k~eLe~~l~el~~rl 92 (129)
T 2fxo_A 63 NLADAEERCDQLIKNKIQLEAKVKEMNKRL 92 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 23
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.86 E-value=4.8 Score=33.35 Aligned_cols=73 Identities=21% Similarity=0.366 Sum_probs=45.3
Q ss_pred hhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019884 44 RVSDLESEHSALRSQL-------AEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 44 RVs~LE~E~~~LR~~l-------aEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (334)
...+|+.|...|..+| ++.+.....|..+-..||..|. .||..-.+.+..|..++..|-..+..|..|+.
T Consensus 42 ~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 42 KMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444 4444455555555556666665 67777777777777777777777777777776
Q ss_pred HHH
Q 019884 114 KLE 116 (334)
Q Consensus 114 KLE 116 (334)
-||
T Consensus 122 d~e 124 (129)
T 2fxo_A 122 DLE 124 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 24
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=91.33 E-value=2.5 Score=36.30 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=66.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
+++.--|+..||.++...+....+.|+...+...|+.-++..|. .|+..+...+..|..|-..+.+.+|.|.-
T Consensus 47 ~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 47 AQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 56777899999999999999999999999999999999999998 88889999999999999999999998754
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.26 E-value=2 Score=42.10 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=11.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRI 66 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i 66 (334)
...|.+|+.|.....+.+......|
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i 486 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEI 486 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555444444444333333
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.25 E-value=1.8 Score=39.33 Aligned_cols=78 Identities=12% Similarity=0.171 Sum_probs=50.6
Q ss_pred ChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 019884 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKE 97 (334)
Q Consensus 25 DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-------~rL~~a~~e~~kL~kE 97 (334)
++-|-=+|-..|. .+..|++.||.++-.+-.++.++...+.++++++..++..|. ..+.....+...|.++
T Consensus 88 ~~kE~~aL~kEie--~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~ 165 (256)
T 3na7_A 88 SERELRSLNIEED--IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKK 165 (256)
T ss_dssp SSSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666776 345888888888888888888888888888888887777776 2333333344444444
Q ss_pred HHHHHHH
Q 019884 98 NEALTNT 104 (334)
Q Consensus 98 ~~sLa~T 104 (334)
++.|+..
T Consensus 166 r~~l~~~ 172 (256)
T 3na7_A 166 KEDLVEK 172 (256)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 4444443
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.16 E-value=1.9 Score=36.65 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 50 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
.|.-.++.+..+-...+.++.+.+..|= ..|..+..+.+.+.+|+..|-.-+..|.+.+.|||+
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK----~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLK----HELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333333 555688999999999999999999999999999985
No 28
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=90.81 E-value=1.4 Score=48.21 Aligned_cols=76 Identities=11% Similarity=0.231 Sum_probs=46.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~----------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (334)
.+..|+.|+..|+.+|..-+..+.+|++++..|+.++. ..+..+.++..+|..++..|...++.|..++.
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777666666666666666665544 34444555666666666666666666666665
Q ss_pred HHHHHH
Q 019884 114 KLEVFR 119 (334)
Q Consensus 114 KLE~FK 119 (334)
.++.-.
T Consensus 938 e~ee~l 943 (1184)
T 1i84_S 938 EEEERS 943 (1184)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 554433
No 29
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=90.52 E-value=0.32 Score=32.25 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
||+||.|++.|-. .+.+||+|+..||...|
T Consensus 1 isrlee~~r~l~~-------ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 1 VSRLEEDVRNLNA-------IVQKLQERLDRLEETVQ 30 (32)
T ss_dssp CCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 5788988888754 56789999998887766
No 30
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=90.14 E-value=0.73 Score=41.68 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
|++|-.|...|+++|..|+..|..|++++.+++....
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6789999999999999999999999999999997664
No 31
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.11 E-value=5.5 Score=33.15 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=43.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (334)
+..++.+|+.|+..+|.++..-.. ....-.....+|..+|..+|+.|..-+++|--.-+-||.=.|
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~--------------e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYA--------------QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 556677777777777776654221 111111223344455666666666666666666666666666
Q ss_pred HHHhhcccc
Q 019884 121 TLVQSLKDD 129 (334)
Q Consensus 121 ~LmqSLqeD 129 (334)
...-||.|-
T Consensus 74 ~t~~SLeD~ 82 (111)
T 2v66_B 74 ATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhHHHH
Confidence 666666553
No 32
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=90.05 E-value=6.8 Score=34.18 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=51.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019884 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (334)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (334)
...++-|...+|.+|..|..+|.|-+.....-+..|..|+..+. ++|.........+..|-+..-+.+.-+.-+
T Consensus 65 eekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~ 141 (155)
T 2efr_A 65 AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSK 141 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34556788889999999999999888777777777777776666 666666666666666666544444443333
No 33
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.03 E-value=2.1 Score=52.01 Aligned_cols=86 Identities=19% Similarity=0.267 Sum_probs=60.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKENEALTNTV 105 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-----------------~rL~~a~~e~~kL~kE~~sLa~Tv 105 (334)
.++..+|.+....+++|.++...+++|+++++.|+..+. .||.+|..=...|..|+..-..++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQS 2093 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence 466677777777777777777777777777777766654 455555555667788888888888
Q ss_pred HHHhhhHHHH------------------HHHHHHHHhhccc
Q 019884 106 RKLQRDVSKL------------------EVFRKTLVQSLKD 128 (334)
Q Consensus 106 KKL~RDvaKL------------------E~FKk~LmqSLqe 128 (334)
+.|......| +.||+.||+....
T Consensus 2094 ~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~~W~~ 2134 (3245)
T 3vkg_A 2094 ENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKWMI 2134 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 8887776664 4578777765443
No 34
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.39 E-value=7.9 Score=30.77 Aligned_cols=69 Identities=14% Similarity=0.268 Sum_probs=39.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQ-IESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r-~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
.|.-||-.||.+-..|-.++.+- +.+ .+.+...+..-|..+......+..||..|...+..|..|+..|
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l-------~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQL-------KGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------hhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46679999999988887766432 221 2223333333334444455555666666666666666665544
No 35
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=88.36 E-value=8 Score=30.48 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
....+...|.++-..|...+..|.+.+.+|+.
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555444444433
No 36
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=88.34 E-value=3.3 Score=45.29 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 51 EHSALRSQLAEKDSRIAELQSQIESIY 77 (334)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~r~~~le 77 (334)
|+..|+.++.+-...+..+++.+..++
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele 884 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELE 884 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 37
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.33 E-value=0.79 Score=39.46 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=35.0
Q ss_pred CChhhhHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 24 SDPFEQLDVARKITSIAISTRVSDLES---EHSALRSQLAEKDSRIAELQSQIE 74 (334)
Q Consensus 24 sDPyEQLdlArkIts~A~atRVs~LE~---E~~~LR~~laEKd~~i~~Lq~r~~ 74 (334)
+|=.++|.++|++.+.. ..||..||. +...|...+..++..+..|+.++.
T Consensus 4 s~LEd~L~~~r~~l~~~-~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~ 56 (135)
T 2e7s_A 4 GSLEEQLNKSLKTIASQ-KAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIA 56 (135)
T ss_dssp --CCSTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHH
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34568899999976544 888888887 566666666667777777776544
No 38
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=88.32 E-value=2 Score=35.42 Aligned_cols=51 Identities=27% Similarity=0.466 Sum_probs=33.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEA 100 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~s 100 (334)
|-+-.|+++||.|..+||..-.+=+..|.+|+.+|. ....||..|..||..
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~eve-----------rL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELD-----------RLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH-----------HHHHHHHHHHHHHHh
Confidence 345678999999999999885554444444444433 455667777777654
No 39
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=88.24 E-value=1 Score=34.66 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019884 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 60 aEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (334)
.-|+.+|.+|+.+|..|+.... .|..||..|-..|..|.-.+..
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~-----------~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHS-----------STTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999988876443 4666777777777666655543
No 40
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=87.61 E-value=3.8 Score=31.90 Aligned_cols=57 Identities=26% Similarity=0.347 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019884 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (334)
..|-.+|.+|+++|..|.-=|.+|- +||-.-.+-|-||..+...+..-+..|++|+.
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR----~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~ 62 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLR----SKLEKYVDITKKLEDQNLNLQIKISDLEKKLS 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 4688899999999998887666555 56668899999999999998888888887764
No 41
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=87.52 E-value=2.5 Score=34.41 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 48 LESEHSALRSQLAEKD---SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 48 LE~E~~~LR~~laEKd---~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
-..++..|++.++.+. ..|.-|+.++.-....+. .=..+-++|..|+..|...+..|.|.+.+|..
T Consensus 21 kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~----aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 21 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666776666555 555666666665555554 55566789999999999999999999999853
No 42
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.49 E-value=8.3 Score=34.90 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019884 97 ENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 97 E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (334)
.+..+...+..+...+++|..=+..|...|-
T Consensus 144 ~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~ 174 (256)
T 3na7_A 144 LESLVENEVKNIKETQQIIFKKKEDLVEKTE 174 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344444445555555555555555555553
No 43
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.17 E-value=8.6 Score=34.09 Aligned_cols=50 Identities=18% Similarity=0.371 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 019884 47 DLESEHSALRSQLA-EK------DSRIAELQSQIESIYSSLS---DKLGQAQADKERLSK 96 (334)
Q Consensus 47 ~LE~E~~~LR~~la-EK------d~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~k 96 (334)
.||.|+..|..+|. || ...|.+|+.|+..|+..|- .++..+..|+.+|++
T Consensus 66 ~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~E 125 (168)
T 3o0z_A 66 QTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQD 125 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666665 44 4567788888888887776 444444444444433
No 44
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.14 E-value=2.2 Score=33.17 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
+..|...|.+|++.|...++++..||..|+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ 50 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELD 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554443
No 45
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=86.86 E-value=0.49 Score=41.28 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 85 ~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
.....+..||..|+.-+-+.-+.|.||+.-...-||+|
T Consensus 97 ~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKql 134 (146)
T 2xnx_M 97 EQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQV 134 (146)
T ss_dssp HHHHHHHHHHGGGTTTC---------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777666667777777777777766655
No 46
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=86.67 E-value=3.8 Score=41.91 Aligned_cols=64 Identities=23% Similarity=0.385 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019884 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 50 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (334)
+|-.+|||.+.++...|..++.-+.++...+. ....+|.+..+.+.+|+..+-+.+-.++.+++
T Consensus 349 ae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiA 415 (602)
T 1cii_A 349 AEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIA 415 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 57789999999999999999999999998888 77888999999999999999777777766654
No 47
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.64 E-value=8.1 Score=33.84 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
...||..-|.=+.+.|-..+++|..+-.+|
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777777766554
No 48
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=86.11 E-value=2.1 Score=35.75 Aligned_cols=87 Identities=22% Similarity=0.247 Sum_probs=32.0
Q ss_pred hhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE-NEALTNTVRKLQRDVSKLEVFR 119 (334)
Q Consensus 45 Vs~LE~E~~~LR~~la----EKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE-~~sLa~TvKKL~RDvaKLE~FK 119 (334)
|.+|..+...|+.+|. +|+.+...++++.+.--...+ .|..-.+..+++.++ +.....+....+..+++|--=+
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~-~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~R 86 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQIS-ALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSR 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666554 333333333333332222222 222222222222221 2334444444555555554444
Q ss_pred HHH---HhhcccccCC
Q 019884 120 KTL---VQSLKDDEDA 132 (334)
Q Consensus 120 k~L---mqSLqeD~~~ 132 (334)
+.| +.-||.||+.
T Consensus 87 e~V~~eL~rLQ~eNd~ 102 (112)
T 1x79_B 87 EQVSEELVRLQKDNDS 102 (112)
T ss_dssp HHHHTC----------
T ss_pred HHHHHHHHHHHhhccc
Confidence 444 3455666654
No 49
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=86.08 E-value=8 Score=31.56 Aligned_cols=87 Identities=13% Similarity=0.246 Sum_probs=60.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAEL---QSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (334)
Q Consensus 26 PyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~L---q~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa 102 (334)
|-|||.++..-+..|.+..++....|...-|.+|..-...+.+= +.|.-.=+..+-+||..+.-...|=.+..+.|-
T Consensus 5 P~eql~~te~Ai~~A~~aga~~~apEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~ 84 (98)
T 4fm3_A 5 PLEQMRLTEQALEQAKAVGATDDVAELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELD 84 (98)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999988888888887554444321 111111111222777788777777777777777
Q ss_pred HHHHHHhhhH
Q 019884 103 NTVRKLQRDV 112 (334)
Q Consensus 103 ~TvKKL~RDv 112 (334)
..|..|...+
T Consensus 85 ~~I~~LrqEl 94 (98)
T 4fm3_A 85 KSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7776665544
No 50
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.07 E-value=13 Score=30.58 Aligned_cols=66 Identities=23% Similarity=0.342 Sum_probs=35.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRI-----------AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i-----------~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
+...|+.|+.|+..|+.+-+-=...| .+++.++..||.+|+ .+.++.+....|-..|-+.=-+|-
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~----~~r~e~~~ql~EYq~LlnvKl~Ld 116 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQ----KAKQDMARLLREYQELMNTKLALD 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777766665544333333 334444555555554 555666666666666655433443
Q ss_pred h
Q 019884 110 R 110 (334)
Q Consensus 110 R 110 (334)
-
T Consensus 117 ~ 117 (129)
T 3tnu_B 117 V 117 (129)
T ss_dssp H
T ss_pred H
Confidence 3
No 51
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.66 E-value=10 Score=34.03 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=20.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019884 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (334)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (334)
...++-+|+++++.|..-+.+|..-|.+
T Consensus 86 ~~~~~~~Lq~el~~l~~~~~~l~~~ire 113 (189)
T 2v71_A 86 SYKQVSVLEDDLSQTRAIKEQLHKYVRE 113 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788888888888888887776643
No 52
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=85.16 E-value=3.2 Score=32.26 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=32.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
|-.|+..+.+-.++|..||..|.+|+.++...|..++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888889999999999999999999997665
No 53
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=84.34 E-value=2.5 Score=41.31 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=25.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
++.+..|+.|+..|++++.+.++.|++++.++..++..|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777777777766665444
No 54
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.50 E-value=18 Score=29.92 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=36.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSR-----------IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~-----------i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
+...|..|+.|+..|+.+-+-=+.. +.+++.++..||.+|+ .+.++.+....|-..|.+.=-+|-
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~----~~r~em~~ql~EYq~Ll~vKl~Ld 118 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLA----QLRCEMEQQNQEYKILLDVKTRLE 118 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777766544333333 3344445555555555 566666666666666665433444
Q ss_pred hh
Q 019884 110 RD 111 (334)
Q Consensus 110 RD 111 (334)
-.
T Consensus 119 ~E 120 (131)
T 3tnu_A 119 QE 120 (131)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 55
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.47 E-value=12 Score=30.85 Aligned_cols=77 Identities=19% Similarity=0.174 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---D----KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~----rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F 118 (334)
..-..|+..||..+..-...|..|+.+...||.+|. . .+..+......|-.|...+-..+-...++...|=..
T Consensus 34 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~v 113 (131)
T 3tnu_A 34 QSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDV 113 (131)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888887777777777777777777776 2 233333334445555555555555555666556555
Q ss_pred HHHH
Q 019884 119 RKTL 122 (334)
Q Consensus 119 Kk~L 122 (334)
|-.|
T Consensus 114 Kl~L 117 (131)
T 3tnu_A 114 KTRL 117 (131)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 56
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=83.39 E-value=5.5 Score=32.60 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
++.++.++|+.|...|-..|++|
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666655555555444
No 57
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.93 E-value=18 Score=29.68 Aligned_cols=77 Identities=14% Similarity=0.233 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---D----KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~----rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F 118 (334)
..-..|+..||..+..-...|..|+.+...||.+|. . .+..+......|..|...+-..+-...++...|=..
T Consensus 32 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv 111 (129)
T 3tnu_B 32 RNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNT 111 (129)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888888888888888877 2 233333333444455555555555555555555555
Q ss_pred HHHH
Q 019884 119 RKTL 122 (334)
Q Consensus 119 Kk~L 122 (334)
|-.|
T Consensus 112 Kl~L 115 (129)
T 3tnu_B 112 KLAL 115 (129)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 58
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=82.36 E-value=7.6 Score=29.75 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=17.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
|+..+|.++..........+..|..|+.|+..+|..|
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444
No 59
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=81.54 E-value=20 Score=29.35 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~ 79 (334)
.|+++..||.++.+-...-+.|+-.+..+..+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~ 49 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAED 49 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888765444444444444444433
No 60
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=81.22 E-value=17 Score=28.08 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=49.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (334)
+.+....||..++.+.+.. +..+.+++.++..+|.+|+ .+.++.+....|-..|-+.=-+|--.+ -+++|
T Consensus 6 l~~~~~sLE~~l~e~e~~~---~~~~~~~q~~i~~lE~eL~----~~r~e~~~q~~EYq~LlnvK~~Ld~EI---atYRk 75 (84)
T 1gk4_A 6 LKGTNESLERQMREMEENF---AVEAANYQDTIGRLQDEIQ----NMKEEMARHLREYQDLLNVKMALDIEI---ATYRK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHH
Confidence 4455666777666666655 3457888999999999888 777788888888888887655565444 34444
Q ss_pred HH
Q 019884 121 TL 122 (334)
Q Consensus 121 ~L 122 (334)
-|
T Consensus 76 LL 77 (84)
T 1gk4_A 76 LL 77 (84)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 61
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=80.75 E-value=2.6 Score=33.52 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 50 SEHSALRSQLAEKDSRIAELQSQI 73 (334)
Q Consensus 50 ~E~~~LR~~laEKd~~i~~Lq~r~ 73 (334)
.|++.|+++|.+||..|.-|++++
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456777777777777777777665
No 62
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=80.63 E-value=10 Score=32.96 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019884 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEA-------------LTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (334)
Q Consensus 62 Kd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~s-------------La~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (334)
|++...+|++++..+|.+|+ +..-+..++.+|... +.+--...+...++++..|+.|.+-|+.
T Consensus 27 Ke~l~~~l~~~i~q~d~elq----QLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 27 KEEAEREISNGIANADQQLA----QLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999999888 555555555444443 2222356677788888888888777665
Q ss_pred c
Q 019884 129 D 129 (334)
Q Consensus 129 D 129 (334)
=
T Consensus 103 v 103 (150)
T 4dci_A 103 V 103 (150)
T ss_dssp H
T ss_pred H
Confidence 4
No 63
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=80.08 E-value=2 Score=34.83 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 61 EKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 61 EKd~~i~~Lq~r~~~le~~L~--~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
=+-.+|.|+-.+|+.+...-- .+++...||.+||.+|+..--..++.|.
T Consensus 29 WR~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rEK~~WE~rI~eLG 79 (92)
T 1x4t_A 29 WRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELG 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344567888888887765433 7888999999999999999998888774
No 64
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=79.14 E-value=12 Score=27.52 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F 118 (334)
...++...|.+||..|...|..|...++.|..+
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667778888888888888888877653
No 65
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=78.82 E-value=9.2 Score=30.09 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=4.3
Q ss_pred HHhhhhhHH
Q 019884 42 STRVSDLES 50 (334)
Q Consensus 42 atRVs~LE~ 50 (334)
..||.+||.
T Consensus 5 e~rv~~LEr 13 (83)
T 2xdj_A 5 EDRVTQLER 13 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555544
No 66
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=78.54 E-value=7.9 Score=31.01 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
..||..++.+....+ ..+..++..+..||.+|+ .+.++.+....|-..|-+.--+|--.++ +++|-|
T Consensus 22 ~~LE~~l~e~E~~~~---~e~~~~q~~i~~lE~eL~----~~r~e~~~ql~EYq~LlnvKl~Le~EIa---tYrkLL 88 (95)
T 3mov_A 22 RACLERIQELEDLLA---KEKDNSRRMLTDKEREMA----EIRDQMQQQLNDYEQLLDVKLALDMEIS---AYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 344444444444332 366778889999998887 7777777778888888776556654443 445443
No 67
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=78.20 E-value=2.6 Score=36.92 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 78 (334)
..||..+..|...|+.|+..|.+|++++..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 378888899999999999999999988887774
No 68
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=77.67 E-value=19 Score=28.27 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=23.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
.-+..++..|..|+++||-++.+-...+..|+++-..+-..|
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666655554444433
No 69
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=77.60 E-value=11 Score=31.80 Aligned_cols=33 Identities=36% Similarity=0.625 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa 102 (334)
+.+|+..|..|...|+ .+..+.++|-+++..|.
T Consensus 73 vqeLqgEI~~Lnq~Lq----~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQ----DASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhhchhhh
Confidence 4444444444444333 55555555555555443
No 70
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.75 E-value=26 Score=27.70 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019884 87 AQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 87 a~~e~~kL~kE~~sLa~TvKKL 108 (334)
..++|++|..|..+-..-+.+|
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555444444
No 71
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=76.58 E-value=27 Score=27.80 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=40.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~----------~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
|+-..+..|+.|-.+|.+.|.+=+..-+.|...+..++..+. .....-.-+...+.+|+++|-+...--.
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~ 87 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQ 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666665444444444444444444443 0111122233566777777777766666
Q ss_pred hhHHHHH
Q 019884 110 RDVSKLE 116 (334)
Q Consensus 110 RDvaKLE 116 (334)
..+.||.
T Consensus 88 ~qLdkL~ 94 (96)
T 3q8t_A 88 MQLDKLK 94 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 6666653
No 72
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=76.53 E-value=1.3 Score=32.26 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (334)
..+.++++|.++-.+|..-+-.|.|||++
T Consensus 28 rlendnanlekdianlekdianlerdvar 56 (56)
T 3he4_A 28 RLENDNANLEKDIANLEKDIANLERDVAR 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHhhcC
Confidence 33457777777777777777777777764
No 73
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=75.96 E-value=37 Score=34.18 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019884 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKE--RLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 55 LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~--kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (334)
|...+.+++..+.++...|......|. ++...+++.. +....-..|...+.+|...|.+||..-.+++..+.
T Consensus 126 Iq~slk~~Q~Qi~en~n~~~~~~~~~e-~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~~ 199 (464)
T 1m1j_B 126 IDNKLVKTQKQRKDNDIILSEYNTEME-LHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCR 199 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccccccchhhHHHHHHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445555555555555555555444443 1111112221 12334455667778888888999988888877654
No 74
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=75.69 E-value=24 Score=27.40 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=40.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
+.+.+..||.-++.+.... ...+.+++..+..+|.+|+ .+..+.+....|-..|-+.=-+|--.+
T Consensus 8 L~~q~~~Le~~l~e~E~~~---~~~l~~~q~~i~~lE~el~----~~r~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 8 LQCQLAAKEAKLRDLEDSL---ARERDTSRRLLAEKEREMA----EMRARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp ----CTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344455666555555543 3456777888888888777 667777777777777777555555444
No 75
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=75.57 E-value=27 Score=27.40 Aligned_cols=75 Identities=12% Similarity=0.261 Sum_probs=52.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---------------DKLGQAQADKERLSKENEALTNTVR 106 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---------------~rL~~a~~e~~kL~kE~~sLa~TvK 106 (334)
.-.|..|=.|+.++=..+.|+|....++..++.+.=..+. .++.....+...|.+|+=.||+++-
T Consensus 10 ld~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l~dEKv~lA~~~~ 89 (104)
T 4afl_A 10 LDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQTY 89 (104)
T ss_dssp HHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888899999888888777665433322 4566677777888889988887753
Q ss_pred H-HhhhHHHHH
Q 019884 107 K-LQRDVSKLE 116 (334)
Q Consensus 107 K-L~RDvaKLE 116 (334)
- +.|-+.+|+
T Consensus 90 dlvdkhirrLD 100 (104)
T 4afl_A 90 EMVDKHIRRLD 100 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 3 344444444
No 76
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=75.53 E-value=57 Score=31.08 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q 019884 96 KENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 96 kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
+.-..|-+.|++||..+.-+++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777776665554
No 77
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=74.66 E-value=24 Score=29.00 Aligned_cols=69 Identities=19% Similarity=0.352 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHH
Q 019884 46 SDLESEHSALRSQLAEKD--------SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV----RKLQRDVS 113 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd--------~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~Tv----KKL~RDva 113 (334)
..||.|+++|.+.|..-| +..++|...|..|-...+.-|..+..+. .|....+... ++..-|+.
T Consensus 16 ~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~----qe~~~FIKa~kvL~~rns~DI~ 91 (101)
T 4aj5_1 16 STLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINILLDKARLEN----QEGIDFIKATKVLMEKNSMDIM 91 (101)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHhHHHHH
Confidence 469999999999887322 4667888888877777663333333222 2333333333 34455777
Q ss_pred HHHHH
Q 019884 114 KLEVF 118 (334)
Q Consensus 114 KLE~F 118 (334)
||+.|
T Consensus 92 ~ire~ 96 (101)
T 4aj5_1 92 KIREY 96 (101)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 78
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=73.06 E-value=5.2 Score=36.32 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019884 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (334)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 126 (334)
++||.+.++--+.|-..+..+++.+.+|+..|+.||+.|
T Consensus 378 l~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l 416 (425)
T 1yf2_A 378 LEEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 416 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666677777788888999999999999986
No 79
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=72.56 E-value=3.3 Score=38.81 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
.|++....+...|...|.-|..+.|.|.+.|.+|+.
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777788888888887777744
No 80
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=72.14 E-value=5.8 Score=32.82 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
++|.+|+..|++.+. .+..|+.+|..|+..|.
T Consensus 2 ~~l~~~~~~l~~~~~----~~~~l~~~~~~l~~~l~ 33 (182)
T 3kqg_A 2 STLNAQIPELKSDLE----KASALNTKIRALQGSLE 33 (182)
T ss_dssp -----------CHHH----HHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 567888888888776 45566666666665553
No 81
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=72.03 E-value=32 Score=27.24 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
..||.++..|+++-.-....+ .+.-+..|- ..+..+..++.+|.-|.++|+..+..+..
T Consensus 33 ~~Le~~i~~l~~~~~~~~~~~--ye~~i~~Lr----~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 33 KILLAELEQLKGQGKSRLGDL--YEEEMRELR----RQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCcHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888877643322211 123333333 33347888999999999999999887754
No 82
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.87 E-value=22 Score=36.71 Aligned_cols=18 Identities=28% Similarity=0.145 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhcccccCC
Q 019884 115 LEVFRKTLVQSLKDDEDA 132 (334)
Q Consensus 115 LE~FKk~LmqSLqeD~~~ 132 (334)
-|..-|+|-|-..-|-..
T Consensus 178 Y~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 178 YEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhhcccCC
Confidence 456778888877666543
No 83
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=71.67 E-value=34 Score=26.75 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019884 91 KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (334)
..+...+...|...+..|...+..|+.-.+.|-+-+.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777777766666655544
No 84
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.56 E-value=26 Score=27.69 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 87 AQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 87 a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
..++|..|..|+..+.+....|.++..+|.
T Consensus 32 LKekN~~L~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 32 LKEKNNSLSQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334455555555555555555555555543
No 85
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=71.42 E-value=16 Score=26.53 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 63 DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (334)
Q Consensus 63 d~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sL 101 (334)
...+..|.+|-..|...|. .|.++..+|..|-+.|
T Consensus 15 ~~~l~~L~~rN~rL~~~L~----~AR~el~~Lkeele~L 49 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLK----EARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 3444455555555555554 5555555555555544
No 86
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=71.10 E-value=27 Score=25.26 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
...++...|..||..|...|..|...++.|..
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667788888888888888777743
No 87
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=70.75 E-value=33 Score=26.15 Aligned_cols=41 Identities=10% Similarity=0.170 Sum_probs=20.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
||..++..|+.|......++.+-...+.+.+.+...+|..+
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev 43 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDEL 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45666666666655555444444444444444444444333
No 88
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=69.98 E-value=36 Score=26.30 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (334)
Q Consensus 55 LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~T 104 (334)
+-++|.+-.....+|+++|..|+..|. .+..++..+..|-..|..+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le----~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLE----KSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 445666667777888999998887776 7777777777776666554
No 89
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=69.88 E-value=6.8 Score=35.56 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019884 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (334)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 128 (334)
++||.+.++--+.|-..+.++++-+++|+..|++||+.+=-
T Consensus 168 l~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~~~ 208 (425)
T 1yf2_A 168 LEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKLLT 208 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777778888888888999999999999998643
No 90
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=69.71 E-value=22 Score=25.31 Aligned_cols=43 Identities=30% Similarity=0.369 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 68 ~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
+|++||..||..|. ...-.-++|. .....+-.||.+-|.+||.
T Consensus 2 dlEekv~~Le~~ld----~LqTr~ArLl---ae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLD----TLQTRFARLL---AEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 68889999998775 2222222333 3345566788888888885
No 91
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=69.30 E-value=11 Score=27.74 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 84 L~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
.....++...|.+||+.|...|..|.+.+.-|.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666778888888888888888888774
No 92
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=69.18 E-value=12 Score=36.68 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~ 79 (334)
..||.|+..||+++.+-++.+..+++.+..++.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666555544433
No 93
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=68.37 E-value=50 Score=27.35 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=39.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENE 99 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~----------~rL~~a~~e~~kL~kE~~ 99 (334)
-++.|+.|+..||..-..=...|.+|+..-..||++-. .||-.|.++|+=|..|-+
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888887776666677777777777776654 677777777776665543
No 94
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=68.26 E-value=17 Score=33.18 Aligned_cols=95 Identities=23% Similarity=0.271 Sum_probs=45.2
Q ss_pred hHHHHhcCCCChhhhHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 15 PEEVLQVLPSDPFEQLDVARKITSIAISTR----VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQAD 90 (334)
Q Consensus 15 p~eilavLPsDPyEQLdlArkIts~A~atR----Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e 90 (334)
.++|..+|=.+|+-=++=+.=...+-+... ||=.|..+.+| ++|+..||..| .+
T Consensus 33 ~~~V~~yL~~~PdFf~~~~~Ll~~L~lph~~~~aVSL~erQ~~~L--------------R~r~~~Le~~L--------~~ 90 (252)
T 3e98_A 33 AEQVAAYLSQHPEFFVEHDELIPELRIPHQPGDAVSLVERQVRLL--------------RERNIEMRHRL--------SQ 90 (252)
T ss_dssp ----------------------------------CHHHHHHHHHH--------------HHHHHHHHHHH--------HH
T ss_pred HHHHHHHHHhCCHHHhhCHHHHHhCCCCCCCCCcccHHHHHHHHH--------------HHHHHHHHHHH--------HH
Confidence 567999999988632222222222222222 34444444444 44555555333 24
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHhhcccccC
Q 019884 91 KERLSKENEALTNTVRKLQRDVS---KLEVFRKTLVQSLKDDED 131 (334)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~RDva---KLE~FKk~LmqSLqeD~~ 131 (334)
....++||+.+.+.+..|...|- -|+.|-..|...|+++=.
T Consensus 91 Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~ 134 (252)
T 3e98_A 91 LMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQ 134 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCC
Confidence 55678899999999999999887 588889999999987654
No 95
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=68.20 E-value=6.3 Score=28.79 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
...++...|..||+.|...|..|...++.|.
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555677788888888888888877764
No 96
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=68.19 E-value=13 Score=35.64 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=31.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
+.-.+++|..|+.+|...+...+..|..|++.+.+++..++
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~ 43 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVT 43 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888888888888888888877765554
No 97
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=68.02 E-value=9.2 Score=29.26 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 76 (334)
|..||.++..|......-...+..|+..+..|
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555444443333333333344333333
No 98
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=67.76 E-value=19 Score=26.03 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (334)
Q Consensus 62 Kd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sL 101 (334)
|...+.+|+.++..|+..-. ....+...|..|+..|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~----~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNG----QLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 45567777877776665433 3333444444444444
No 99
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=67.41 E-value=22 Score=28.15 Aligned_cols=31 Identities=35% Similarity=0.500 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
...++...|.+||..|-..|..|..+|..|.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888999999999999999988774
No 100
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=67.27 E-value=19 Score=25.42 Aligned_cols=19 Identities=11% Similarity=0.392 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019884 60 AEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 60 aEKd~~i~~Lq~r~~~le~ 78 (334)
.+.+..+++|++||+-|+.
T Consensus 13 k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555556666554443
No 101
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=67.04 E-value=7.7 Score=33.42 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 78 (334)
..||..+.++..+++.++..|++|+.|+..+|.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467888888888888888888888888877764
No 102
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=66.60 E-value=28 Score=28.37 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=20.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
.+++..+.|+.+|+..|.+-...-.+.+.....++..|
T Consensus 19 ~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 56 (97)
T 2eqb_B 19 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEV 56 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666655444444444444444444
No 103
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.13 E-value=48 Score=26.35 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
.+.+++.++-.|..+|..-++-|.-||.++
T Consensus 34 ~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ 63 (101)
T 3u1c_A 34 AAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 104
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=65.95 E-value=30 Score=26.67 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=9.4
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLA 60 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~la 60 (334)
=.++..||.++..|-.+|+
T Consensus 28 e~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 28 PQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555554
No 105
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=64.91 E-value=47 Score=25.82 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 58 QLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 58 ~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
.+..|+..+..|++++...+.... ...+.+.+|..|++.|..++.-..--+++|..=|..|
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rk----ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eL 75 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKK----ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHL 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455677777777777776665444 6777778888888888777443344444454444443
No 106
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=64.74 E-value=13 Score=26.34 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=28.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 77 (334)
.-|..||.|-..|+.+-.-|..+|+-|++.++.|-
T Consensus 10 nevaslenenetlkkknlhkkdliaylekeianlr 44 (49)
T 3he5_A 10 NEVASLENENETLKKKNLHKKDLIAYLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 45778888888898888888888888888777654
No 107
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=64.45 E-value=27 Score=26.95 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 019884 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (334)
Q Consensus 100 sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 131 (334)
.|..+|-+.++.+++|+.-=+.|++-|++-..
T Consensus 32 eLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 32 ELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566777777777777777777777776544
No 108
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=64.44 E-value=8 Score=26.20 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 83 KLGQAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
|+.+.++..+.|..+|..|.+.|.+|..
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556677778888888888888887753
No 109
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=64.18 E-value=10 Score=35.03 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019884 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 87 a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (334)
.++||.+.++--+.|-..+..+.+.+.+|+..|+.||+.+=
T Consensus 353 pl~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~lf 393 (406)
T 1ydx_A 353 SFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKLF 393 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777888888999999999999999874
No 110
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=63.77 E-value=24 Score=26.08 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (334)
Q Consensus 30 LdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~ 79 (334)
+....+|++. ...-|..+..+++.+-++...=.+.|..|+.|+..+|..
T Consensus 15 l~~lEnIv~~-l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~ 63 (65)
T 3m0d_C 15 LRVFENIVAV-LNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQT 63 (65)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Confidence 3344666664 555555666666555333333355566666666666653
No 111
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=63.50 E-value=66 Score=27.60 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (334)
.|+.=+++|.+.+.++..++.-|++-....+ ..+.+..+..+|...-.+.|+.+.++|..
T Consensus 83 ~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~--------~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 83 LLAEYNGRLAAELEDRRQLARMLVEYTQNQK--------DVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666666666665544444 33445566666777777777777666654
No 112
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=63.36 E-value=21 Score=34.80 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 52 HSALRSQLAEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 52 ~~~LR~~laEKd~~i~~Lq~r~~~le~ 78 (334)
+..|++++.+-.+...+|++.+..++.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~ 31 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTEL 31 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 113
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=63.20 E-value=36 Score=41.81 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=4.5
Q ss_pred HHhhccccc
Q 019884 122 LVQSLKDDE 130 (334)
Q Consensus 122 LmqSLqeD~ 130 (334)
|+.+|..|.
T Consensus 2078 Li~gL~~Ek 2086 (3245)
T 3vkg_A 2078 LLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhhhcc
Confidence 555555443
No 114
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=63.18 E-value=8.6 Score=25.89 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
|+.+.++..+.|..||..|.+-|.+|.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345666777778888888777777664
No 115
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=63.16 E-value=81 Score=27.89 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
++.+|.-++.|+.++.-=...-..|+..+..|..+|.
T Consensus 43 ~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 43 ISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444444445555555555444
No 116
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=62.74 E-value=18 Score=28.77 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 019884 34 RKITSIAISTRVSDLESEHSALRSQLAE 61 (334)
Q Consensus 34 rkIts~A~atRVs~LE~E~~~LR~~laE 61 (334)
+|.-.+.+..||..||.|-..||.++.+
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVEQ 61 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555554443
No 117
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=62.68 E-value=33 Score=24.89 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 34 RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 34 rkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 78 (334)
..|++. ...-|..+..+++.+.++...=...|+.|+.|+..+|.
T Consensus 18 e~iv~~-l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~ 61 (66)
T 3m0a_A 18 ENIVCV-LNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLER 61 (66)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHH
Confidence 444443 33344444444444433333334444444444444443
No 118
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=61.88 E-value=38 Score=26.26 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 50 SEHSALRSQLAEKDSRIAELQSQIE 74 (334)
Q Consensus 50 ~E~~~LR~~laEKd~~i~~Lq~r~~ 74 (334)
+|+..|+.+.+..+..+++++.++.
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~ 27 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLA 27 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655555555555544
No 119
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=61.72 E-value=30 Score=25.01 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
.....|.+|++--..--..+.+|.-.|+||
T Consensus 20 ~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 20 SLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666665555556666666666655
No 120
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=61.50 E-value=34 Score=26.69 Aligned_cols=50 Identities=22% Similarity=0.362 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019884 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (334)
Q Consensus 67 ~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lm 123 (334)
.+|++||..||..|. .. +.++++=-.....+-.||.+-|.+||.+=+.+.
T Consensus 3 ~dlEEKv~~LE~sld----~L---QTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 3 MGLEEKVTRMESSVD----LL---QTRFARILAEYESMQQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp -CHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 468899999998875 22 223333333455677899999999999766643
No 121
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.72 E-value=55 Score=31.34 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=13.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSR 65 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~ 65 (334)
.+.-.-..||..+..+|....+.+..
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~ 389 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGT 389 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44444455555555555555444443
No 122
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=60.55 E-value=24 Score=31.94 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 54 ~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
.+.++|..-|.+|..|+.....|-.+|. ...+|...|.++-++|-+.++.+.-.++|-
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~----~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~ 67 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLD----TKATEIKQLQKQIDSLNAQVKELKTQTSQQ 67 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 3556777788889999988888887776 778888888888888888888777666653
No 123
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=60.49 E-value=36 Score=27.25 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 53 SALRSQLAEKDSRIAELQSQIESIYSS----LS----DKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~r~~~le~~----L~----~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
..||+.+.+|.-.|..|.+.+..+..+ ++ --|.+|..|...|...-..|.+--++.|
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g~E~RRIN 89 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLRNEDRRIN 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 578999999999988887766554332 22 3344555555555555444444444443
No 124
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.47 E-value=74 Score=27.68 Aligned_cols=71 Identities=21% Similarity=0.323 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQ---LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (334)
Q Consensus 27 yEQLdlArkIts~A~atRVs~LE~E~~~LR~~---laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa 102 (334)
.+.|-.+|+... ....|+..||.+-..+++- +.+++..+..|++++..-. .+-..|..++.++.+|-..|.
T Consensus 19 eD~L~~~R~el~-~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~----~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 19 EEQLNKSLKTIA-SQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKEN----ELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH----HHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 456667777655 3466777777655544432 2233333333333322111 222344555555555555443
No 125
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=60.11 E-value=13 Score=34.24 Aligned_cols=40 Identities=8% Similarity=0.156 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019884 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 127 (334)
++||.+.++--+.+-..+..+++-+++|+.+|+.||+.+=
T Consensus 166 l~eQ~~I~~~l~~~d~~i~~~~~~~~~l~~~k~~l~~~~f 205 (406)
T 1ydx_A 166 KNEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHKLF 205 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666777777888889999999998764
No 126
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=59.96 E-value=35 Score=24.96 Aligned_cols=18 Identities=11% Similarity=0.228 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019884 61 EKDSRIAELQSQIESIYS 78 (334)
Q Consensus 61 EKd~~i~~Lq~r~~~le~ 78 (334)
-|-..+.+|+.++..|+.
T Consensus 20 rKk~~~~~Le~~v~~L~~ 37 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLED 37 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355667778877776664
No 127
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=59.64 E-value=70 Score=26.04 Aligned_cols=43 Identities=23% Similarity=0.396 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (334)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 77 (334)
|...--++.....||+-...||.+-+++...|.+||.|+...=
T Consensus 17 K~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~L 59 (101)
T 1d7m_A 17 KVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETL 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445666778888899999999999999999999877543
No 128
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=59.24 E-value=64 Score=25.44 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 71 SQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 71 ~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
+|+..++.. ++.+.+++.++-.|-.+|..-++-|..|+.+++
T Consensus 23 d~ae~~e~~----~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 23 DRAEQAEAD----KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 335556666666666666666666666655543
No 129
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=58.68 E-value=12 Score=25.41 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
|+.+.++..+.|..+|..|.+-|.+|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566777778888888888888777664
No 130
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.56 E-value=73 Score=25.89 Aligned_cols=52 Identities=25% Similarity=0.440 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~ 103 (334)
|=.++..|..++.+.+..+..|+.++..-.. +-..|+.++.++..|-..|..
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~----~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKENE----LRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666665554332 223555556666555555543
No 131
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=58.53 E-value=11 Score=25.45 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
|+.+.++..+.|..||..|.+.|.+|.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 445556667777777777777776663
No 132
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=58.47 E-value=11 Score=25.27 Aligned_cols=27 Identities=4% Similarity=0.160 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
|+.+.++..+.|..+|..|.+.|-+|.
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345666777778888888877776663
No 133
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=58.26 E-value=48 Score=31.80 Aligned_cols=91 Identities=11% Similarity=0.169 Sum_probs=60.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019884 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~--~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (334)
+|-..|-+|+++|+.++..+++.+..|.+.+.+|+..+........ .++ ...-...-|. -+..+|--|...-+
T Consensus 302 ~~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----e~~~~~~~~~~~~~ 376 (406)
T 4dyl_A 302 LTVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERV-QLLGKRQVLQ----EALQGLQVALCSQA 376 (406)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGG-GGHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHH-HHHhHHhhHH----HHHHHHHHHHhHHH
Confidence 3456788999999999999999999999999999977765432111 010 0000111111 12345666777888
Q ss_pred HHHHHHHHHHhhcccccC
Q 019884 114 KLEVFRKTLVQSLKDDED 131 (334)
Q Consensus 114 KLE~FKk~LmqSLqeD~~ 131 (334)
||++=|-.|-+.|++-..
T Consensus 377 ~~~~q~~~~~~~~~~~~~ 394 (406)
T 4dyl_A 377 KLQAQQELLQTKLEHLGP 394 (406)
T ss_dssp HHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 888888888777776554
No 134
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=57.67 E-value=38 Score=29.99 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=23.2
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 019884 266 TRVDGKEFFRQVRNRLSYEQFAIFLANVKELNAH 299 (334)
Q Consensus 266 ~rVDGKEFFRQARsRLSYEQFsaFLANIKELNAh 299 (334)
.+||=-.|.|++|. |+=|||-. -|-|++.+++
T Consensus 141 g~I~ld~ylK~vR~-LaReQF~~-ral~~Ki~~~ 172 (174)
T 2p22_A 141 GTIPLDTFVKQGRE-LARQQFLV-RWHIQRITSP 172 (174)
T ss_dssp TSSCHHHHHHHHHH-HHHHHHHH-HHHHHHHHSS
T ss_pred CCCCHHHHHHHHHH-HHHHHHHH-HHHHHHHHhh
Confidence 56888899999986 88899864 4455555543
No 135
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=57.30 E-value=66 Score=25.01 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhhHHH
Q 019884 98 NEALTNTVRKLQRDVSK 114 (334)
Q Consensus 98 ~~sLa~TvKKL~RDvaK 114 (334)
|..+-+.+..|.+||.-
T Consensus 44 R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 44 REEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 34444455555555543
No 136
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=57.09 E-value=12 Score=25.25 Aligned_cols=27 Identities=11% Similarity=0.157 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
|+.+.++..+.|..||..|.+.|.+|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455666777788888888887776664
No 137
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=56.90 E-value=12 Score=28.58 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 51 EHSALRSQLAEKDSRIAELQSQIESIY 77 (334)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~r~~~le 77 (334)
.++.|...|.+||+.|.+|+.++-.+.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554444433
No 138
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=56.55 E-value=13 Score=25.21 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
|+.+..+..+.|.+++.-|++.|.+|.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456677777888888888888877765
No 139
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=56.43 E-value=34 Score=26.55 Aligned_cols=32 Identities=34% Similarity=0.461 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
...++...|.+||..|-..|..|...|..|..
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888888888888888887753
No 140
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=56.12 E-value=50 Score=23.28 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019884 58 QLAEKDSRIAELQSQIE 74 (334)
Q Consensus 58 ~laEKd~~i~~Lq~r~~ 74 (334)
+..++.+.+..+..++.
T Consensus 20 ~~~~~~~~~~~~k~~~~ 36 (60)
T 3htk_A 20 KCSLKTDEFLKAKEKIN 36 (60)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 141
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.07 E-value=1e+02 Score=26.81 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 29 QLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (334)
Q Consensus 29 QLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~ 79 (334)
||+.++.-... +..+++..+.|+.+|...|.+=...-.+.+.....++..
T Consensus 38 ~lE~~r~~~~~-l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~E 87 (154)
T 2ocy_A 38 NYNQLKEDYNT-LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKE 87 (154)
T ss_dssp TTHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333 335566788888888877764433333333333333333
No 142
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=55.95 E-value=42 Score=25.87 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 65 ~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
.|.+|+.|++-.|..+. ...+...+.+++-+.|...++.|...+..++
T Consensus 15 Ri~~LE~klAfqE~tIe----eLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 15 RLVELETRLSFQEQALT----ELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444333 4444445555666666666666665555544
No 143
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=55.84 E-value=48 Score=25.50 Aligned_cols=25 Identities=12% Similarity=0.393 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 57 SQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 57 ~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
..|..=...|+.|+.++..|+..|.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566666666666666664
No 144
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=55.79 E-value=70 Score=28.85 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHHHHH
Q 019884 46 SDLESEHSALRSQLA 60 (334)
Q Consensus 46 s~LE~E~~~LR~~la 60 (334)
..+|+++..++.++.
T Consensus 72 ~~~~a~l~~~~a~l~ 86 (341)
T 3fpp_A 72 KEVEATLMELRAQRQ 86 (341)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 145
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=55.59 E-value=15 Score=24.29 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 93 RLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 93 kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
.|.+|-..|..-|.||+.-|++||.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677778888888888888874
No 146
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=55.55 E-value=56 Score=25.01 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 64 ~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
+....++..+..+|.+|+ .+..+.+....|-..|.+.=-+|--++ .+++|-|
T Consensus 5 ~e~~~~~~~i~~lE~eL~----~~r~e~~~ql~EYq~LlniKl~Le~EI---atYRkLL 56 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMA----EMRARMQQQLDEYQELLDIKLALDMEI---HAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 344566666777776666 556666666666666666544555444 3454443
No 147
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=55.34 E-value=27 Score=27.80 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
++|++++..|..+...-+..|++++.++...+. ....++..+|..|-+.+-...-.|-.-+|-+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~------~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~ 67 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDA------KQTVQKHIDLLHTYNEIRDIALGMIGKVAEH 67 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456666666666666655556555554443211 1345677778888777777666665555544
No 148
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=54.82 E-value=84 Score=31.18 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=9.7
Q ss_pred HHHHHhhhhhHHHHHHH
Q 019884 39 IAISTRVSDLESEHSAL 55 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~L 55 (334)
.=|..||..|-.++..|
T Consensus 63 r~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNY 79 (390)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 44556666666655554
No 149
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=54.65 E-value=22 Score=25.07 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvK 106 (334)
+.+|+.|+.+||. |....++...-|+.||.-|-+-+|
T Consensus 5 l~eLE~r~k~le~----~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 5 LSELENRVKDLEN----KNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3456666665553 334666667778888887766554
No 150
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=54.60 E-value=72 Score=30.66 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=22.9
Q ss_pred HHHHHHhcCCHHHHHHHHHH-------------HHHHhhccccHHHHHHh
Q 019884 273 FFRQVRNRLSYEQFAIFLAN-------------VKELNAHKQTKEETLRK 309 (334)
Q Consensus 273 FFRQARsRLSYEQFsaFLAN-------------IKELNAhkQTREETL~K 309 (334)
|=.|-=.|| |++|++|+.. |+++|.++..=|.-|..
T Consensus 245 fd~qk~qRl-~q~~~~fv~~hl~vaF~~dPe~~l~~~~~~~~~~~r~l~~ 293 (302)
T 3ibp_A 245 FDVQKTQRL-HQAFSRFIGSHLAVAFESDPEAEIRQLNSRRVELERALSN 293 (302)
T ss_dssp HHHHHHHHH-HHHHHHHHHHTTTTSSSCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHH-HHHHHHHHhhchhhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444444565 8888888764 77777766555555543
No 151
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=54.60 E-value=45 Score=30.45 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHHHH
Q 019884 46 SDLESEHSALRSQLA 60 (334)
Q Consensus 46 s~LE~E~~~LR~~la 60 (334)
..+++++..++.+|.
T Consensus 73 ~~~~a~l~~~~a~l~ 87 (369)
T 4dk0_A 73 NTRKAALASYQAQLV 87 (369)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 152
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=53.88 E-value=1.2e+02 Score=26.93 Aligned_cols=99 Identities=17% Similarity=0.260 Sum_probs=64.9
Q ss_pred CCCChhhhHH-HHHHH---HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-------
Q 019884 22 LPSDPFEQLD-VARKI---TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----DKLG------- 85 (334)
Q Consensus 22 LPsDPyEQLd-lArkI---ts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-----~rL~------- 85 (334)
+|.=|.|||= |-.+= +--+|+...-.||.|-..||..-+|+|......+.++..|-..|. +++.
T Consensus 2 m~~yple~~~~~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d~gtt~~~i~~m~~yI~ 81 (169)
T 3k29_A 2 MVRYPLEPVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTSDAILKMKAYIK 81 (169)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 4667778752 22221 345678888899999999999999999999998888888876654 1111
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHH
Q 019884 86 -----------QAQADKERLSKENEALTNTVR---KLQRDVSKLEVFRK 120 (334)
Q Consensus 86 -----------~a~~e~~kL~kE~~sLa~TvK---KL~RDvaKLE~FKk 120 (334)
.+.+-..++..++..|...-+ .-.++++|++.-|+
T Consensus 82 llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKfelHrq 130 (169)
T 3k29_A 82 VVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHKE 130 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223455556666655433 34567777766666
No 153
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=53.54 E-value=81 Score=27.02 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019884 72 QIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 72 r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (334)
|+..|+.++. .+.++..+..+|.+.|-..|..+-++++
T Consensus 93 ri~~Le~E~~----~~~~el~~~v~eae~ll~~v~~~l~~ia 130 (151)
T 1yke_B 93 KIDMLQKKLV----EVEDEKIEAIKKKEKLLRHVDSLIEDFV 130 (151)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443 5555556666666666666666666654
No 154
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=53.47 E-value=20 Score=34.50 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=26.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
+...|...|.++..|+.+|.+-+..|.+|+.+|..|+..+
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777766666777776666666544
No 155
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=53.18 E-value=54 Score=24.79 Aligned_cols=34 Identities=38% Similarity=0.628 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 84 L~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
|..++....+|-|-|++|+.-++.|++.+.+|-+
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 3477777788888888888888888888888754
No 156
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=52.90 E-value=69 Score=25.46 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 56 RSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 56 R~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
|..|.|-=.....|.+.++.++.++. +|+.-.++...|+..-.-|+.-+++|
T Consensus 30 r~AL~eaL~EN~~Lh~~ie~~~eEi~-~Lk~en~~L~elA~~~q~la~~i~~L 81 (83)
T 1wlq_A 30 RKALYEALKENEKLHKEIEQKDSEIA-RLRKENKDLAEVAEHVQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445556666666666666553 44444444455555555555555554
No 157
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=52.80 E-value=18 Score=28.07 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHH
Q 019884 35 KITSIAISTRVSDLESEHSALRSQLA 60 (334)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~la 60 (334)
|.-.+.+..||..||.|-..||.++.
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 158
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.45 E-value=68 Score=33.16 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=32.0
Q ss_pred HHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 37 TSIAISTRVS-DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 37 ts~A~atRVs-~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
-......-|+ .||..+..|+.++...-..|..||..|..+=..+|
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666 88888888888888777777777776665555554
No 159
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=52.13 E-value=15 Score=25.09 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 84 LGQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 84 L~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
+.+.++..+.|..||.-|.+.|.+|..-+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34455556666666666666666655433
No 160
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.94 E-value=26 Score=25.49 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 62 Kd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
|-..+.+|+.+|..|+. +|..|..+...|...+..|
T Consensus 20 Kk~~~~~Le~~v~~L~~-----------~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKA-----------QNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 55667777777776664 4444444444444444433
No 161
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=51.93 E-value=32 Score=27.07 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
...-|+.-|..|..++..+..|+.--+..|
T Consensus 41 ELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 41 ELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444
No 162
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=51.90 E-value=13 Score=35.74 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=28.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
+-.+|..+|+++..|+..|.+.+..|.+|+.+|..|+..+
T Consensus 9 lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 9 YEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp -CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777788888888888777777777777777666544
No 163
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=51.69 E-value=1.4e+02 Score=26.91 Aligned_cols=73 Identities=11% Similarity=0.213 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (334)
+..|+.+...|..+.......+.+|.++++.+ . ++|-..|.+-+..=|--||--=+|+..+++.|.+
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~-----------v--~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~ 200 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKA-----------V--SAKEALETDLYKRFILVLNEKKTKIRSLHNKLLN 200 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44666666666665555555555555443321 1 1333445666666666666666777777777776
Q ss_pred hccccc
Q 019884 125 SLKDDE 130 (334)
Q Consensus 125 SLqeD~ 130 (334)
..|+-+
T Consensus 201 ~~~~~~ 206 (213)
T 1ik9_A 201 AAQERE 206 (213)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 666543
No 164
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=50.99 E-value=33 Score=33.64 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCC
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~ 132 (334)
...++..+|.++...+...++.+...+.+.|..+|.|-.-|+|-.++
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 14 HLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33444444444444444455555555566666677776666665543
No 165
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=50.58 E-value=50 Score=28.98 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhhHH-HHHHHHHHHHhhcccc
Q 019884 98 NEALTNTVRKLQRDVS-KLEVFRKTLVQSLKDD 129 (334)
Q Consensus 98 ~~sLa~TvKKL~RDva-KLE~FKk~LmqSLqeD 129 (334)
+..|.--+..|...|. ++|.||.+|.--.++=
T Consensus 134 r~~L~Py~eelr~kl~~~~eeLr~~l~P~~eel 166 (191)
T 1nfn_A 134 RVRLASHLRKLRKRLLRDADDLQKRLAVYQAGA 166 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444445544443 6788888875544433
No 166
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=50.55 E-value=93 Score=28.46 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 56 RSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 56 R~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
|..|.|-=..+..|.++|..++..+ ++|+.-.++...|+.+-.-|+..+++|.
T Consensus 107 R~AL~eaLeEN~~Lh~~ie~l~eEi-~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIEQKDNEI-ARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555666666666666555 3555555555666666666666666654
No 167
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=50.29 E-value=93 Score=24.65 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHH
Q 019884 96 KENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 96 kE~~sLa~TvKKL~RDvaKLE 116 (334)
..|..+.+.|+.-.+||++|+
T Consensus 78 s~R~~~~~klr~Yk~dL~~lk 98 (102)
T 2qyw_A 78 TFRNPMMSKLRNYRKDLAKLH 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777753
No 168
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=49.92 E-value=21 Score=30.36 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=24.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 77 (334)
+..|+..+..|.+.|+.++..|++|++++..+|
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (192)
T 1ca9_A 5 IEALSSKVQQLERSIGLKDLAMADLEQKVLEME 37 (192)
T ss_dssp THHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666666777788888888888888777655
No 169
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=49.83 E-value=63 Score=33.26 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=38.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS 95 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~ 95 (334)
+.=+...|.|..++|+.|.+-+..++.+|+|+...+..|+ -++.++|+.+++.
T Consensus 313 ~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~-~~~~~~~~~n~~~ 365 (551)
T 2b5u_A 313 THPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYN-SRKSELDAANKTL 365 (551)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHhhhhHH
Confidence 3346778889999999999999999999999887777775 2233444444433
No 170
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=49.31 E-value=32 Score=23.50 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=4.9
Q ss_pred hhhhhHHHHHHH
Q 019884 44 RVSDLESEHSAL 55 (334)
Q Consensus 44 RVs~LE~E~~~L 55 (334)
||++||.-+..|
T Consensus 2 RMnQLE~KVEeL 13 (36)
T 1kd8_B 2 KVKQLKAKVEEL 13 (36)
T ss_dssp CHHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 344444444333
No 171
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=49.11 E-value=21 Score=24.20 Aligned_cols=27 Identities=11% Similarity=0.326 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
|+.+.++..+.|..+|..|.+.|-+|.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 556667777788888888877776654
No 172
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=48.53 E-value=60 Score=30.16 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019884 34 RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 34 rkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (334)
+|..-.|+.+.++.||+|...|+..... .+.+|..+++. .+| ..|-..-|+|..=..
T Consensus 125 fraLEa~L~~v~~~Le~e~~~l~~~~~~---~L~~L~~~i~~----------------~~L----~~Ll~~~k~L~~~~~ 181 (261)
T 3rkg_A 125 HRALESIFINVMSALETDFKLHSQICIQ---ILNDLENEVNR----------------LKL----RHLLIKSKDLTLFYQ 181 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHSCCH----------------HHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCH----------------HHH----HHHHHHhHHHHHHHH
Confidence 5566677777888888887777655432 34444444321 111 112234456777788
Q ss_pred HHHHHHHHHHhhcccccCC
Q 019884 114 KLEVFRKTLVQSLKDDEDA 132 (334)
Q Consensus 114 KLE~FKk~LmqSLqeD~~~ 132 (334)
|...++..|.+=|.+|++-
T Consensus 182 kv~~vr~~leelLddDeDm 200 (261)
T 3rkg_A 182 KTLLIRDLLDELLENDDDL 200 (261)
T ss_dssp HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCHHHH
Confidence 8888999999999988863
No 173
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=48.31 E-value=21 Score=24.00 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019884 84 LGQAQADKERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 84 L~~a~~e~~kL~kE~~sLa~TvKKL~ 109 (334)
+.+.++..+.|..+|.-|.+.|.+|.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44556666777777777777776654
No 174
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=48.15 E-value=36 Score=24.53 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 50 SEHSALRSQLAEKDSRIAELQSQIESIY 77 (334)
Q Consensus 50 ~E~~~LR~~laEKd~~i~~Lq~r~~~le 77 (334)
+|+..||+.++|=...+.+|++++..|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544444444444444443
No 175
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=48.12 E-value=2e+02 Score=29.30 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 56 RSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 56 R~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
...|.++...+.+.+..|.++-..|.
T Consensus 92 ~~~lk~~~~q~~dndn~~~e~S~eLe 117 (491)
T 1m1j_A 92 INILKPGLEGAQQLDENYGHVSTELR 117 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHH
Confidence 44445555555555555554444444
No 176
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=47.77 E-value=1.2e+02 Score=26.84 Aligned_cols=86 Identities=12% Similarity=0.246 Sum_probs=48.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKER----LSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~k----L~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
-..|..+|.++..|+..|..=-.....+-+-...+..+- ..+..++.+-.. +...-..+...+++...-+..|+.
T Consensus 20 R~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~-~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~ 98 (265)
T 2q12_A 20 RSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAAT-HLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSS 98 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888877654333333333222222111 233344444221 112223456788888888999999
Q ss_pred HHHHHHhhccc
Q 019884 118 FRKTLVQSLKD 128 (334)
Q Consensus 118 FKk~LmqSLqe 128 (334)
++..|++.++.
T Consensus 99 ~~~~l~~~~~~ 109 (265)
T 2q12_A 99 CHAVLSTQLAD 109 (265)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887753
No 177
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=47.64 E-value=58 Score=23.33 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 89 ADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
.+|-+|..+-.+|...+-.|.-++++||.
T Consensus 17 kdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 17 KDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 34444544555556666666666666654
No 178
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=46.93 E-value=1.2e+02 Score=26.32 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Q 019884 94 LSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 94 L~kE~~sLa~TvKKL~RDvaKLE 116 (334)
+..+-+.|..+.+.|.-+.+|||
T Consensus 85 ~ea~la~l~~~~~~LeAE~aKLe 107 (146)
T 2xnx_M 85 AKLELDQLSSEKEQLTIEKAKLE 107 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333444444444444555543
No 179
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=46.82 E-value=77 Score=22.71 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 019884 62 KDSRIAELQSQIESIY 77 (334)
Q Consensus 62 Kd~~i~~Lq~r~~~le 77 (334)
|...+.+|+.+|..|+
T Consensus 20 Kk~~~~~LE~~v~~L~ 35 (55)
T 1dh3_A 20 KKEYVKSLENRVAVLE 35 (55)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4466777777665443
No 180
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=46.81 E-value=1.6e+02 Score=26.20 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS--KLEVFRKT 121 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva--KLE~FKk~ 121 (334)
.+-+=|+-||.++++.+..+++..++|.....+|. .-+..|..+.+|+..-+.--....+++.--.. -+|-|+..
T Consensus 75 ~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKfelHrqiwqaE~kre~E~qEElEqEEf~s~ 154 (169)
T 3k29_A 75 KMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHKEEWMKEALKEEARQEEKEQDEMGQL 154 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444667889999999889998888888888887 45667777777776666645555566555444 45677776
Q ss_pred HHhhc
Q 019884 122 LVQSL 126 (334)
Q Consensus 122 LmqSL 126 (334)
+-+.=
T Consensus 155 ~~~~~ 159 (169)
T 3k29_A 155 LHQLH 159 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 181
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=46.60 E-value=69 Score=29.99 Aligned_cols=83 Identities=11% Similarity=0.241 Sum_probs=38.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQS---QIESIYSSLSDKLGQAQADKER----LSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~---r~~~le~~L~~rL~~a~~e~~k----L~kE~~sLa~TvKKL~RDva 113 (334)
+-..|..+|.++..|+..|..=-.....+-+ .+......+ ..++.+... +......+..++++...-+.
T Consensus 19 FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f----~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ 94 (385)
T 2q13_A 19 TRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLT----SKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVID 94 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTTTSCCCC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHH
Confidence 3456677788888887777643333322222 222222222 233333221 11122223345666666666
Q ss_pred HHHHHHHHHHhhcc
Q 019884 114 KLEVFRKTLVQSLK 127 (334)
Q Consensus 114 KLE~FKk~LmqSLq 127 (334)
.|+.+++.|++.++
T Consensus 95 ei~~~~~~l~~~~~ 108 (385)
T 2q13_A 95 ELSSCHAVLSTQLA 108 (385)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655543
No 182
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=46.56 E-value=72 Score=28.39 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
-+.-.|+-+....+.++.||..+..||..|- ...+++..+..| |-.|+.-|
T Consensus 122 paE~ireli~~AertV~kLqkeiD~LEDeL~----~eKek~k~i~~e---LDqTl~eL 172 (175)
T 3mud_A 122 PAEVIRELICYCLDTTAKNEKSIDDLEEKVA----HAKEENLNMHQM---LDQTLLEL 172 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHh
Confidence 3444666666677777777777777774443 555555555555 44455444
No 183
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=45.85 E-value=15 Score=23.54 Aligned_cols=18 Identities=39% Similarity=0.649 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 019884 100 ALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 100 sLa~TvKKL~RDvaKLE~ 117 (334)
.|-+.||+|.++|-|||.
T Consensus 5 kldanvkrlekevgkleg 22 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEG 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhhhhh
Confidence 466788999999999874
No 184
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=45.63 E-value=41 Score=22.98 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=5.8
Q ss_pred hhhhhHHHHHHH
Q 019884 44 RVSDLESEHSAL 55 (334)
Q Consensus 44 RVs~LE~E~~~L 55 (334)
||++||..+..|
T Consensus 2 RMnQLE~kVEeL 13 (36)
T 1kd8_A 2 EVKQLEAEVEEI 13 (36)
T ss_dssp CCHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 455555544443
No 185
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=45.39 E-value=1.5e+02 Score=29.89 Aligned_cols=87 Identities=13% Similarity=0.144 Sum_probs=60.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH---------HHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKE---------NEALTNTV 105 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~------~rL~~a~~e~~kL~kE---------~~sLa~Tv 105 (334)
|..-|..||..+..|-+.-.+-.+.|..|+.-+...+.... .+-+..+|++.+..+| -..|.+.+
T Consensus 93 V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~ 172 (461)
T 3ghg_B 93 IRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSIL 172 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHH
Confidence 56677788888888877777777788888877777766555 2223445555554443 35677888
Q ss_pred HHHhhhHHHHHHHHHHHHhhcc
Q 019884 106 RKLQRDVSKLEVFRKTLVQSLK 127 (334)
Q Consensus 106 KKL~RDvaKLE~FKk~LmqSLq 127 (334)
.++++.|.+||.--.+++.--+
T Consensus 173 ~~~~~~i~~l~~~~~~~~~~c~ 194 (461)
T 3ghg_B 173 ENLRSKIQKLESDVSAQMEYCR 194 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhhhhhcc
Confidence 8888888888877777766543
No 186
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=45.33 E-value=52 Score=31.07 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=12.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAE 61 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laE 61 (334)
+-..|..+|.++..|+..|..
T Consensus 42 FRa~l~~~E~~~~~l~~~l~k 62 (407)
T 4h8s_A 42 TRSLLSVFEEDAGTLTDYTNQ 62 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777666665553
No 187
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=45.32 E-value=30 Score=28.07 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=22.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~ 74 (334)
+..|+..|..|+..|.++=.+=|++|..++..+.
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~ 37 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLR 37 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888777776666666666665543
No 188
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.22 E-value=2.1e+02 Score=27.26 Aligned_cols=53 Identities=15% Similarity=0.076 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 56 RSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 56 R~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
..+..+.+......++++.......+.+..+..+++++|.+|...+...+.+-
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 416 VKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 33333344444444444444444444444455555666666555555544443
No 189
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=45.09 E-value=2.3e+02 Score=28.50 Aligned_cols=10 Identities=10% Similarity=-0.091 Sum_probs=6.3
Q ss_pred ccccCCCCcc
Q 019884 244 LSSVHSSHSS 253 (334)
Q Consensus 244 ~~~~~ss~~s 253 (334)
-|||..=+.+
T Consensus 405 GWWy~~C~~s 414 (464)
T 1m1j_B 405 GWWYNRCHAA 414 (464)
T ss_dssp CBCCSSBCSE
T ss_pred CEeCCCCCCC
Confidence 4788765555
No 190
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer, post-fusion, viral PR; HET: NAG; 3.05A {Human parainfluenza virus 3}
Probab=44.68 E-value=58 Score=33.14 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=45.5
Q ss_pred HHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 30 LDVA--RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (334)
Q Consensus 30 LdlA--rkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKK 107 (334)
|.|| -.||+-+--.+....++++.+|+..++.=.+.+.+|+.-++.+=.+++ ++|+. =|+.|.-++.+
T Consensus 102 LGVataaqiTAavAl~qa~~na~~I~~lk~si~~tn~Av~~l~~g~~~l~~av~-----~lQd~-----IN~~i~PaIn~ 171 (490)
T 1ztm_A 102 LGVATSAQITAAVALVEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIK-----SVQDY-----VNKEIVPSIAR 171 (490)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHHhhhhhhh
Confidence 5667 789988888899999999999999999999999999999998888875 33333 25677888888
Q ss_pred HhhhHHHHH
Q 019884 108 LQRDVSKLE 116 (334)
Q Consensus 108 L~RDvaKLE 116 (334)
|..+++-+.
T Consensus 172 l~C~v~~~~ 180 (490)
T 1ztm_A 172 LGCEAAGLQ 180 (490)
T ss_dssp HHHHHHHHH
T ss_pred cccHhHHHH
Confidence 888887654
No 191
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=44.41 E-value=1.4e+02 Score=26.99 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
|.+|. ||..|=-.|..||.++.--......|+.+|..--+.|.|...-=..+|.+|
T Consensus 72 igDLe-kVv~LLLsLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~EDAkeLKe~l 127 (190)
T 3thf_A 72 VDAVG-NITSLLLSLSERLAQTESSLETRQQERGALESKRDLLYEQMEEAQRLKSDI 127 (190)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443 333443444466666655555668888888888877777766555555443
No 192
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=44.33 E-value=2.2e+02 Score=27.82 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHHH---
Q 019884 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLS--DKLGQAQADKE---RLSKE--- 97 (334)
Q Consensus 31 dlArkIts~A~atRVs~LE~E~~~LR~~laEKd-----~~i~~Lq~r~~~le~~L~--~rL~~a~~e~~---kL~kE--- 97 (334)
+|..+|..+.-.-++..++.+...|-.++++-+ .....|-++++.|+..+. ..+....++.. .|.+|
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~e~D 92 (365)
T 1gqe_A 13 DLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADD 92 (365)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 355566666666666777777777777766532 334455556666665555 44444444443 33322
Q ss_pred ---HHHHHHHHHHHhhhHHHHHH
Q 019884 98 ---NEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 98 ---~~sLa~TvKKL~RDvaKLE~ 117 (334)
+..+...++.|...+.+||.
T Consensus 93 ~e~~~~a~~e~~~l~~~l~~le~ 115 (365)
T 1gqe_A 93 EETFNEAVAELDALEEKLAQLEF 115 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 13345667788888888874
No 193
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=44.25 E-value=76 Score=23.21 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (334)
Q Consensus 62 Kd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sL 101 (334)
|-..+.+|+.++..|+..=. ....+...|.+|+..|
T Consensus 21 Kk~~~~~le~~~~~L~~~N~----~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNE----ALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 33445555555555553332 3334444445554444
No 194
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=43.28 E-value=55 Score=23.75 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 68 ~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
++|.++..+|.+|+ .+.++.+....|-..|-+.=-+|--
T Consensus 4 ~~q~~i~~le~el~----~~r~e~~~q~~eYq~LlniK~~Le~ 42 (59)
T 1gk6_A 4 QLEDKVEELLSKNY----HLENEVARLKKLVGDLLNVKMALDI 42 (59)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45555666665555 5555555555555555554334443
No 195
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=43.21 E-value=31 Score=22.74 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019884 59 LAEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 59 laEKd~~i~~Lq~r~~~le~ 78 (334)
++.-+...+.|+..|.+||.
T Consensus 10 vaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 10 VAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 34444555555555555554
No 196
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=43.15 E-value=77 Score=22.74 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 85 GQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 85 ~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
...+.+...|.+||..|...+..|...+
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555677778888877777776554
No 197
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=43.14 E-value=1.3e+02 Score=24.32 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019884 57 SQLAEKDSRIAELQSQIESIY 77 (334)
Q Consensus 57 ~~laEKd~~i~~Lq~r~~~le 77 (334)
+.-.|.++.+.+|+.++..+.
T Consensus 22 q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 22 QAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 198
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=43.14 E-value=1.4e+02 Score=24.56 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 70 QSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 70 q~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
.++++.+|..+. +...+.....+|...+--+...|+++++.|
T Consensus 36 KD~LEe~eE~~a----ql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 36 KDMLLELEEQLA----ESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333 333334444455555555666666666654
No 199
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=42.61 E-value=47 Score=30.33 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019884 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (334)
Q Consensus 61 EKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FK 119 (334)
|+.+....|+.-+.+.-.+++ ..+---++|+.|++.|-.-++||..|.+..=+|+
T Consensus 27 ~~~~~~~~~~a~~~s~~s~~~----dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe 81 (206)
T 3oa7_A 27 ERTEALQQLRVNYGSFVSEYN----DLTKSHNTLSKELDNLRSRFGNLEGNTSERITIK 81 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHH
Confidence 566666666666666655555 3444446699999999999999999999876665
No 200
>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}
Probab=42.59 E-value=10 Score=32.12 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=27.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhhccccHHHHHHhhhhhcCCCChhHHHHHH
Q 019884 276 QVRNRLSYEQFAIFLANVKELNAHKQTKEETLRKTDEVFGPENKDLYTIFE 326 (334)
Q Consensus 276 QARsRLSYEQFsaFLANIKELNAhkQTREETL~KA~eIFG~~NkdLY~~Fe 326 (334)
-.|.||+|||-++|+.. +|..-..+=..|.+...--.....++|..|.
T Consensus 21 YmrGRlTle~lN~~i~~---in~~~~~KY~il~~p~k~l~~~~~~~~~~~k 68 (130)
T 2lyc_A 21 YQLGRLTLEMMNEIVSK---MDDFLMKKSKILGKTNKQLTRSDREVLDNWR 68 (130)
T ss_dssp HHHSSCCHHHHHHHHHH---HHHHHHHHHHHTTCCTTTCCHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHH---HHHHHHHHHHHHHhHHHHcCHHHHHHHHHHH
Confidence 46899999999999864 5555444444443333222222344455544
No 201
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=42.39 E-value=1.1e+02 Score=24.43 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Q 019884 94 LSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 94 L~kE~~sLa~TvKKL~RDvaKLE 116 (334)
..++-+.|...+.|++.=|+.||
T Consensus 67 ~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 67 TLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444443
No 202
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.21 E-value=37 Score=33.30 Aligned_cols=41 Identities=12% Similarity=0.311 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019884 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
..+|+.|+..||..+ .-|.-|++-|-+..+.|++++.+++.
T Consensus 44 ~~dl~~~lk~le~~~-----------~~L~~e~e~l~~~~~~~~~e~~~~~e 84 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEY-----------ELLTLQEDYIKDEQRHLKRELKRAQE 84 (428)
T ss_dssp ----CHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444 34444444555555666666555543
No 203
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=42.19 E-value=35 Score=25.19 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019884 61 EKDSRIAELQSQIESIY 77 (334)
Q Consensus 61 EKd~~i~~Lq~r~~~le 77 (334)
-|..++.+|+.+|..|+
T Consensus 27 RK~~~~~~Le~~v~~L~ 43 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELL 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666777777766443
No 204
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=42.16 E-value=1.4e+02 Score=24.51 Aligned_cols=13 Identities=15% Similarity=-0.026 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHH
Q 019884 27 FEQLDVARKITSI 39 (334)
Q Consensus 27 yEQLdlArkIts~ 39 (334)
.++|+..+.|..+
T Consensus 43 ~~dl~~l~~I~~l 55 (142)
T 3gp4_A 43 AEDLRWILFTRQM 55 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666544
No 205
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=41.99 E-value=96 Score=22.42 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=25.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
-..++.||+|+..+|+.++.--+...+|=.=--.||.++.
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIa 45 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIA 45 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4567888999998888877655555555443344554443
No 206
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.85 E-value=19 Score=25.98 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~ 74 (334)
|..|-.|...||+++.+=...+.+|+.|+.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555544
No 207
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.73 E-value=42 Score=22.99 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 51 EHSALRSQLAEKDSRIAELQSQIESI 76 (334)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~r~~~l 76 (334)
|-.+|-..+..||..|+.|+++-.+|
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44567777778888888777665443
No 208
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=41.71 E-value=1.2e+02 Score=24.91 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 51 EHSALRSQLAEKDSRIAELQSQIES 75 (334)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~r~~~ 75 (334)
+|..|+.+|.|.++..++|+..+..
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~e 55 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEE 55 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444433
No 209
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=41.68 E-value=39 Score=25.74 Aligned_cols=59 Identities=7% Similarity=0.158 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019884 55 LRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 55 LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (334)
+=.+|...|.+++.|.+++..||.++. .+-.... +...|-++|=.|-..+-.+-+...+
T Consensus 8 ~I~~Lk~~d~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 8 EISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp HHHHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334566678888888888888888876 1111111 6667777776666666555554444
No 210
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=41.44 E-value=1.1e+02 Score=25.85 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHH-HHHHHHHHH
Q 019884 93 RLSKENEALTNTVRKLQRDVS-KLEVFRKTL 122 (334)
Q Consensus 93 kL~kE~~sLa~TvKKL~RDva-KLE~FKk~L 122 (334)
.+..+-+.|...++++.+.+- ||+.+++..
T Consensus 78 ~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~ 108 (180)
T 1s94_A 78 QMKEELEELMTDIKRTANKVRGKLKTIELNI 108 (180)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666653 455555543
No 211
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=41.27 E-value=1.1e+02 Score=28.16 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHH
Q 019884 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKE-NEALTNTVRKLQRDVSKLEVFRK 120 (334)
Q Consensus 65 ~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE-~~sLa~TvKKL~RDvaKLE~FKk 120 (334)
.+.+|++++..++..+. ...++..++.++ ...|..--..|....++.++..+
T Consensus 227 ~l~~l~~~i~~l~~~l~----~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 279 (357)
T 3rrk_A 227 AAARMKERARLAPEELV----GIREEVARLSRESGEALIALWTRAKDEVARYKAVAD 279 (357)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555554443 444444555555 55566666666666677766553
No 212
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=41.21 E-value=2.2e+02 Score=26.33 Aligned_cols=95 Identities=18% Similarity=0.285 Sum_probs=43.2
Q ss_pred HhcCCCChhhhHHHHHHH------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 019884 19 LQVLPSDPFEQLDVARKI------TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------- 81 (334)
Q Consensus 19 lavLPsDPyEQLdlArkI------ts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~----------- 81 (334)
-++||.+-|-|==+-.-| -.+|-+.--...++=-+.+|. .|-|-.+++-+.|+.+++..|.
T Consensus 28 ~sILPrNiFS~sYllyVi~qgtDvG~VA~KANeAGqgAYdAQVrN--DEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~ 105 (242)
T 3c9i_A 28 ASILPRNVFSKSYLLYVIAQGTDVGAIAGKANEAGQGAYDAQVKN--DEQDVELADHEARIKQLRIDVDDHESRITANTK 105 (242)
T ss_dssp SSSSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhHHHHHHhcccchHHHHhhhhhhhhhhhhHHHhcC--cccceeeecchhhhhhhhcccccHHHHhhhhhh
Confidence 468999977774333222 223322222222222222332 2444445555555555555544
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 82 ------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 82 ------~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
-||..++.+..-|.-+-..|-.+|.-..-+++-|
T Consensus 106 ~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal 145 (242)
T 3c9i_A 106 AITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISAL 145 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeecccccchhhhhhhhhhcccccccccchhhh
Confidence 3444444444444444444444444444444444
No 213
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=41.08 E-value=1.3e+02 Score=29.58 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019884 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (334)
++...|..|-..|...+|.|...+..+|.=-..++.+|-+-
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 109 (455)
T 2dq0_A 69 EPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNI 109 (455)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44556777777777777777777777777777777777654
No 214
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=40.83 E-value=55 Score=26.04 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 94 LSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 94 L~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
|..|...+-..+-...++...|=..|-.|
T Consensus 49 lE~eL~~~r~e~~~ql~EYq~LlnvKl~L 77 (95)
T 3mov_A 49 KEREMAEIRDQMQQQLNDYEQLLDVKLAL 77 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555555444
No 215
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=40.55 E-value=97 Score=24.30 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Q 019884 94 LSKENEALTNTVRKLQRDV-SKLEVFRKTLV 123 (334)
Q Consensus 94 L~kE~~sLa~TvKKL~RDv-aKLE~FKk~Lm 123 (334)
+.++-+.|+..++++.+.+ .||+.+++..-
T Consensus 48 ~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 48 TKEELEELMSDIKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666655555 34555555443
No 216
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=40.55 E-value=1.3e+02 Score=23.69 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 92 ERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
.+|-+|+..|...++.|.....+|
T Consensus 28 ~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 28 EDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333333
No 217
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=40.25 E-value=1.1e+02 Score=22.66 Aligned_cols=40 Identities=15% Similarity=0.374 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019884 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (334)
Q Consensus 87 a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 126 (334)
..|+.+.|.+|+..|..++-.=+|-=-+||..=|.++++.
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455555555555555555555555555555555544
No 218
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=40.18 E-value=1.4e+02 Score=30.14 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=44.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
.+|-.|..+-+.|+.++.+-......+.+++. +++..-++...|..|-..|...+|.|...+..+|.=-..+
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~--------~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIG--------KRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333333332 2223334455677777778888888888888887777777
Q ss_pred Hhhccc
Q 019884 123 VQSLKD 128 (334)
Q Consensus 123 mqSLqe 128 (334)
+.+|-+
T Consensus 105 l~~iPN 110 (485)
T 3qne_A 105 INQVGN 110 (485)
T ss_dssp HTTSCC
T ss_pred HHhCCC
Confidence 777754
No 219
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=39.95 E-value=1.6e+02 Score=28.74 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=41.8
Q ss_pred hhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----H-HHHHHHHHHHHhh
Q 019884 44 RVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK-----E-NEALTNTVRKLQR 110 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEK-----d~~i~~Lq~r~~~le~~L~--~rL~~a~~e~~kL~k-----E-~~sLa~TvKKL~R 110 (334)
|+..|+.+...|-.+|++- ......|-++++.|+..+. ..+....++...|.+ | +.-+...++.|..
T Consensus 4 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~ 83 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALLA 83 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4455555555555555432 1333444444555544444 333344433333221 1 2234456778888
Q ss_pred hHHHHHH-HHHHHHhh
Q 019884 111 DVSKLEV-FRKTLVQS 125 (334)
Q Consensus 111 DvaKLE~-FKk~LmqS 125 (334)
.+.+||. ++.-|+-+
T Consensus 84 ~~~~le~~l~~lLlp~ 99 (354)
T 3d5a_X 84 RKEALEKELERHLLPK 99 (354)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCC
Confidence 8888885 66655544
No 220
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=39.87 E-value=2.1e+02 Score=28.18 Aligned_cols=31 Identities=6% Similarity=0.102 Sum_probs=16.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~ 71 (334)
|.+.|..||.-+..|-..-.+-..++..|+.
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555555544444444444443
No 221
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=39.81 E-value=79 Score=25.26 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (334)
Q Consensus 64 ~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~ 103 (334)
..+.+|+..+..|..++. ...+|+..+.+|++.+-.
T Consensus 48 ~q~~~LE~e~~~L~~e~~----~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVE----QLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333 444455555555554443
No 222
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=39.31 E-value=97 Score=30.61 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 019884 98 NEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (334)
Q Consensus 98 ~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 131 (334)
...|...+|.|..++..||.--+.+-..|++--.
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666676666666666655443
No 223
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=39.29 E-value=2.1e+02 Score=25.62 Aligned_cols=88 Identities=16% Similarity=0.242 Sum_probs=59.5
Q ss_pred CChhhh----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 019884 24 SDPFEQ----LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQAD-KERLSKEN 98 (334)
Q Consensus 24 sDPyEQ----LdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e-~~kL~kE~ 98 (334)
+||++= ||.+--.+ .++..++..|..|..+|.....+=-..+.++-.--..+|.+|-.|....+-+ +.|+-+-.
T Consensus 117 ~d~~e~i~elfd~~~~~~-~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 117 ENPAEVIRELIAYALDTI-AENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp SCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 577753 45554443 2556667777777777777666666666666666777888887676666555 46666666
Q ss_pred HHHHHHHHHHhhhH
Q 019884 99 EALTNTVRKLQRDV 112 (334)
Q Consensus 99 ~sLa~TvKKL~RDv 112 (334)
+.|.+.++.+..+.
T Consensus 196 ~~Ll~~~~~~~~~~ 209 (213)
T 1ik9_A 196 NKLLNAAQEREKDI 209 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh
Confidence 68888888887765
No 224
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=39.03 E-value=2.2e+02 Score=25.76 Aligned_cols=73 Identities=15% Similarity=0.108 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhHHHH
Q 019884 48 LESEHSALRSQLA-EKDSRIAELQSQIESIYSSLS-----DKLGQAQADKERLSKEN------EALTNTVRKLQRDVSKL 115 (334)
Q Consensus 48 LE~E~~~LR~~la-EKd~~i~~Lq~r~~~le~~L~-----~rL~~a~~e~~kL~kE~------~sLa~TvKKL~RDvaKL 115 (334)
|+.++.+....|- =|+.+|..|+++++.-...-. .-|-.+--|+.+|.-|- -.+++.||+------..
T Consensus 82 ~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLDy~v~~ 161 (214)
T 2cly_A 82 ADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISV 161 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665 578888899888876443222 44555666666665542 23444455433333344
Q ss_pred HHHHH
Q 019884 116 EVFRK 120 (334)
Q Consensus 116 E~FKk 120 (334)
|+..|
T Consensus 162 e~~~r 166 (214)
T 2cly_A 162 QNMMR 166 (214)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 225
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=39.03 E-value=1.7e+02 Score=24.50 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=18.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEK 62 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEK 62 (334)
.|-+++..||+|...|.++=.++
T Consensus 6 ~V~s~l~~LEaeyq~L~~kE~qr 28 (119)
T 2avr_X 6 SLVGELQALDAEYQNLANQEEAR 28 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999998765554
No 226
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=38.90 E-value=1.6e+02 Score=24.18 Aligned_cols=44 Identities=9% Similarity=0.223 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 019884 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQA 89 (334)
Q Consensus 46 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~---~rL~~a~~ 89 (334)
..|-.|++..++++.+=...+.+|...+..||.+=. .||+..+-
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEi 53 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEI 53 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666665433 67766543
No 227
>2jrf_A Tubulin polymerization-promoting protein family member 3; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=38.60 E-value=22 Score=31.82 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=27.5
Q ss_pred HHHHH----hcCCHHHHHHHHHHHHHHhhccccHHHHHH
Q 019884 274 FRQVR----NRLSYEQFAIFLANVKELNAHKQTKEETLR 308 (334)
Q Consensus 274 FRQAR----sRLSYEQFsaFLANIKELNAhkQTREETL~ 308 (334)
|..++ .||.||||-.+|+.|-+-....-+.||.|.
T Consensus 59 F~KvK~k~~rkI~feqF~~aL~~lA~kk~~g~s~eE~~~ 97 (184)
T 2jrf_A 59 FSKVKGKSARVINYEEFKKALEELATKRFKGKSKEEAFD 97 (184)
T ss_dssp HHHHCCSCCSEEEHHHHHHHHHHHHHHHSTTSCHHHHHH
T ss_pred hheeccCcceeecHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 44455 579999999999888777766688888776
No 228
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=38.58 E-value=1.2e+02 Score=25.15 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (334)
Q Consensus 28 EQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKK 107 (334)
+.+.-..+=++-.|..+....|.=|..|=.- +.-.++-.+|+..|+.++. .+.++..+..+|.+.|-..|..
T Consensus 53 ~~f~~~~~ela~dli~k~kqIe~LIdsLP~~----~~see~Q~~ri~~L~~E~~----~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGV----DVSAEEQLRKIDMLQKKLV----EVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTT----TCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333334555555555544444311 1111122234444444444 5555556666666666666666
Q ss_pred HhhhHH
Q 019884 108 LQRDVS 113 (334)
Q Consensus 108 L~RDva 113 (334)
+-++++
T Consensus 125 ~l~~i~ 130 (132)
T 1ykh_B 125 MIEDFV 130 (132)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 666653
No 229
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=38.52 E-value=2.4e+02 Score=27.79 Aligned_cols=10 Identities=10% Similarity=-0.024 Sum_probs=6.4
Q ss_pred ccccCCCCcc
Q 019884 244 LSSVHSSHSS 253 (334)
Q Consensus 244 ~~~~~ss~~s 253 (334)
-|||..=+.+
T Consensus 333 GWWy~~C~~s 342 (409)
T 1m1j_C 333 GWWMNRCHAG 342 (409)
T ss_dssp CBCCSSSCSE
T ss_pred CCcCCCCCCC
Confidence 4788765555
No 230
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=38.47 E-value=1.6e+02 Score=23.86 Aligned_cols=88 Identities=22% Similarity=0.227 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 29 QLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 29 QLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
||.+++..-+-+.. -...|+.++.++. ...+..++++...+|.-. ..|....+|...|....+.+.+.=.+|
T Consensus 16 qL~~~~q~~~e~e~-~k~eL~~~~~~~~------~~~~~k~~eq~~~le~lk-~eL~~~~~el~~lq~~l~~~~~~~~~l 87 (107)
T 2no2_A 16 QVSMARQAQVDLER-EKKELEDSLERIS------DQGQRKTQEQLEVLESLK-QELATSQRELQVLQGSLETSAQSEANW 87 (107)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554443322 2234444444433 233333333333333221 123333344444444444444444444
Q ss_pred hhhHHHHHHHHHHHHh
Q 019884 109 QRDVSKLEVFRKTLVQ 124 (334)
Q Consensus 109 ~RDvaKLE~FKk~Lmq 124 (334)
+-.++-|+.=|..||.
T Consensus 88 ~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 88 AAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444555555555544
No 231
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=38.44 E-value=42 Score=22.57 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=4.6
Q ss_pred hhhhhHHHHHHH
Q 019884 44 RVSDLESEHSAL 55 (334)
Q Consensus 44 RVs~LE~E~~~L 55 (334)
||++||..+..|
T Consensus 1 RM~QLE~kVEeL 12 (33)
T 3m48_A 1 RMAQLEAKVEEL 12 (33)
T ss_dssp --CHHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 344444444444
No 232
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=38.29 E-value=1.7e+02 Score=25.08 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=37.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q 019884 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------DKLGQAQADK 91 (334)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~--------~rL~~a~~e~ 91 (334)
--.+..|+.+.|..++.+..-+.| ++--.++=-+++....+|. .-|..+..+.
T Consensus 51 Kk~ll~RLkRIeGQvrGI~rMIEe-dr~C~DIL~QlaAVrsAL~~v~~~ILe~Hl~~CV~~a 111 (136)
T 4adz_A 51 KAEHLKRLRRIEGQIRGLQRMVDE-DVYCIDILTQVSASTKALQSFALQLLEEHLRHCVADA 111 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999887754 5555555557777777776 5555555443
No 233
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=38.15 E-value=1.1e+02 Score=30.92 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019884 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (334)
+...|..|-..|...+|.|...+..+|.=-..++.+|-+-
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4556777777777777777777777777666777776554
No 234
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=38.07 E-value=62 Score=30.42 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=19.5
Q ss_pred HHHHHHHhhhh---hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 019884 37 TSIAISTRVSD---LESEHSALRSQLAEK----DSRIAELQSQIESIYSSL 80 (334)
Q Consensus 37 ts~A~atRVs~---LE~E~~~LR~~laEK----d~~i~~Lq~r~~~le~~L 80 (334)
+.-+|..-+.. -|.+...+.+++.++ ...++.|+++...|+.++
T Consensus 151 ~~~~Y~~fl~~~d~~~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi 201 (315)
T 2ve7_A 151 TIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQI 201 (315)
T ss_dssp HHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433 233333444444332 344555555555555444
No 235
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11
Probab=38.01 E-value=30 Score=29.15 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=22.5
Q ss_pred hcCCHHHHHHHHHHHHHHhh--ccccHHHHHH
Q 019884 279 NRLSYEQFAIFLANVKELNA--HKQTKEETLR 308 (334)
Q Consensus 279 sRLSYEQFsaFLANIKELNA--hkQTREETL~ 308 (334)
.||.|+||-.+|.-|-+-.. .+-+.||-|.
T Consensus 79 r~I~f~qF~~aL~~lA~~k~~g~~~~~~e~l~ 110 (125)
T 1pul_A 79 KKATFDETKKVLAFVAEDRARQSKKPIQDELD 110 (125)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 47999999999988776653 3378777554
No 236
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.84 E-value=1.5e+02 Score=23.44 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKK 107 (334)
-|.||+||. -|+-+-.+| .++...-.+++.+|+.+...|..|..|-..|-..++-
T Consensus 16 QSALeaEIq-------AKQ~i~EEL-s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 16 QEALEEEVL-------TRQSLSREM-EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666654 355444555 3555554455588888888888887775555444443
No 237
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=37.80 E-value=48 Score=22.67 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 83 KLGQAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 83 rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
|+.+.++..+.|..+|.-|.+.|-+|..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455666777788888888887777654
No 238
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=37.63 E-value=73 Score=25.63 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~ 79 (334)
+..|+..|+..+..|..++.++...|..+++.+.++...
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 239
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=37.53 E-value=58 Score=25.34 Aligned_cols=9 Identities=33% Similarity=0.453 Sum_probs=3.5
Q ss_pred hHHHHHHHH
Q 019884 48 LESEHSALR 56 (334)
Q Consensus 48 LE~E~~~LR 56 (334)
|+.|+..++
T Consensus 19 l~~e~dn~~ 27 (86)
T 3swk_A 19 VEVERDNLA 27 (86)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334433333
No 240
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=37.36 E-value=12 Score=26.61 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=13.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAE 61 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laE 61 (334)
.+-.||..||..+..|+..|+|
T Consensus 48 ~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 48 QLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666666666666666554
No 241
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=36.84 E-value=1.7e+02 Score=27.49 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019884 59 LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (334)
Q Consensus 59 laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~Lmq 124 (334)
+..+.++.+|++.|+..+|..+..+...+......|...+-.....+++|-+..+ .++|...|.
T Consensus 172 lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk~~~v~~Lr~LI~e~D--~~lk~~t~~ 235 (279)
T 3qwe_A 172 QERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLVFQGD--EVLRRVTLS 235 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4457788899999999999999988888888888887777666666666665544 345554443
No 242
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=36.79 E-value=1.5e+02 Score=23.17 Aligned_cols=20 Identities=5% Similarity=0.142 Sum_probs=10.3
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLA 60 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~la 60 (334)
|-..|..+..++..|+..+.
T Consensus 10 F~~~v~~I~~~i~~i~~~v~ 29 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENVE 29 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554443
No 243
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=36.51 E-value=46 Score=25.14 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 16 EEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (334)
Q Consensus 16 ~eilavLPsDPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 76 (334)
+++-.+||.-|..-++=| -|...|+.- +..|+.++..|..++.+=.+.+..|+.++..|
T Consensus 22 ~~Lr~lvP~~~~~k~sK~-~iL~~Ai~Y-I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 22 HSLRDSVPSLQGEKASRA-QILDKATEY-IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHTTSGGGTTSCCCHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCCCCCCCHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 244
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Probab=36.45 E-value=42 Score=30.78 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 88 QADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 88 ~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
.-+..+|...-..++.+|..|.+-|.+||
T Consensus 10 st~v~NlkssVS~~~l~ls~L~~Rv~~le 38 (211)
T 2vrs_A 10 STAISNLKSDISSNGLAITDLQDRVKSLE 38 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 33445666666777777777777777777
No 245
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=36.44 E-value=1.5e+02 Score=23.16 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 61 EKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 61 EKd~~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
|+.+.+..|+.-|...|..+- ++|..+.+++-.+..| |-.|..-|
T Consensus 27 ~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~ee---LDqTL~EL 74 (77)
T 3mtu_E 27 ERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQM---LDQTLLEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHh
Confidence 556666666666666666554 5555666666666555 44555444
No 246
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=36.40 E-value=1.1e+02 Score=26.64 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=28.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 77 (334)
.-+..||.|-.+++..+..|...+.+|..+...+.
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999988776554
No 247
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=36.20 E-value=1.6e+02 Score=23.44 Aligned_cols=50 Identities=22% Similarity=0.352 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019884 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 60 aEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (334)
.|+.+.+..|+.-+...=.++. ....--+||.-||+-|+..--||-|.|-
T Consensus 22 serte~lqqlr~~y~s~~se~~----dlt~s~ekl~ae~~dlivsnsklfrqig 71 (97)
T 1no4_A 22 SERTEALQQLRVNYGSFVSEYN----DLTKSHEKLAAEKDDLIVSNSKLFRQIG 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHhccCCeeeecHHHHHHhc
Confidence 3677777788877776666555 5556678999999999999899988875
No 248
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=36.19 E-value=52 Score=24.27 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDv 112 (334)
.++.....+...|..||..|...|..|...|
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777777777777766554
No 249
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=36.08 E-value=47 Score=23.89 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 019884 271 KEFFRQVRNRLSYEQFAIFLANVKELNAH 299 (334)
Q Consensus 271 KEFFRQARsRLSYEQFsaFLANIKELNAh 299 (334)
++|.+|||.--=||.-...=.|++||...
T Consensus 14 ~~~I~qAk~~rRfdEV~~L~~NL~EL~~E 42 (48)
T 3v1a_A 14 HSFIHQAKAAGRMDEVRTLQENLHQLMHE 42 (48)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999753
No 250
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=36.04 E-value=20 Score=30.23 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=38.6
Q ss_pred CCCChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 019884 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAE 61 (334)
Q Consensus 11 ~f~Lp~eilavLPsDPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laE 61 (334)
+-.=|+||+++=| |=|++|.|..-++ .+|.+.|.+=+.++|....+
T Consensus 87 ~G~tp~eIl~~d~-~~~~~lGL~~~LS----psR~nGl~am~~~ik~~a~~ 132 (136)
T 1wlo_A 87 EGESPEAVLEVPP-GFYRGYGLEEFFT----PLRLRGLEAALLRLQAQVRK 132 (136)
T ss_dssp TTCCTTTTTSSCT-TTTTTTTSHHHHT----HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHhCCH-HHHHHcCchhhcC----chHHHHHHHHHHHHHHHHHH
Confidence 4456899999988 7899999998777 68999999999888887654
No 251
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=35.93 E-value=6.8 Score=33.95 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=41.5
Q ss_pred CCCChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 019884 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDS 64 (334)
Q Consensus 11 ~f~Lp~eilavLPsDPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~ 64 (334)
+-.=|+||+++=|.|=|+||.|..-++. +|.+.|.+=+.++|.+..+.-+
T Consensus 100 ~G~tp~eIl~~d~~~f~~~lGL~~~LSp----sR~NGl~am~~~ik~~a~~~~~ 149 (155)
T 1ni7_A 100 EGKTAAELQAQSPLALFDELGLRAQLSA----SRSQGLNALSEAIIAATKQVLE 149 (155)
T ss_dssp TTCCHHHHHHSCTHHHHHHHTSSSSSCH----HHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHhCCHHHHHHHcCchhhcCc----hHHHHHHHHHHHHHHHHHHHHH
Confidence 4456999999988888999999987764 8999999999999988776543
No 252
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=35.65 E-value=56 Score=29.63 Aligned_cols=38 Identities=11% Similarity=0.281 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHhhc
Q 019884 89 ADKERLSKENEALTNTVRKLQ----RDVSKLEVFRKTLVQSL 126 (334)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~----RDvaKLE~FKk~LmqSL 126 (334)
+||.+.++--+.+-..+..|. +-+++|+.+|+.||+.+
T Consensus 366 ~eQ~~I~~~l~~~d~~i~~l~~~~~~~~~~L~~lk~~LL~k~ 407 (412)
T 3okg_A 366 EEQRRIVAYLDQIQQQVAALKRAQAETEAELKRLEQAILDKA 407 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333333333332 25677888888887754
No 253
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=35.27 E-value=58 Score=29.57 Aligned_cols=7 Identities=14% Similarity=0.373 Sum_probs=2.8
Q ss_pred CccchHH
Q 019884 266 TRVDGKE 272 (334)
Q Consensus 266 ~rVDGKE 272 (334)
++|..+.
T Consensus 348 ~~i~~~~ 354 (412)
T 3okg_A 348 NAITKKD 354 (412)
T ss_dssp -CCCHHH
T ss_pred cccCHHH
Confidence 5554443
No 254
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=34.95 E-value=2.7e+02 Score=27.94 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCC
Q 019884 97 ENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (334)
Q Consensus 97 E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~ 132 (334)
+...|...+|.|..++..||.--+.+-..|++.-..
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~ 152 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALR 152 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556788888888888888888777777777766544
No 255
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=34.56 E-value=1.1e+02 Score=31.24 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019884 59 LAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 59 laEKd~~i~~Lq~r~~~le~~L 80 (334)
|.+|+..|++=+.|-+.+|.+.
T Consensus 482 l~~~~k~~~~~~~~~e~~~~~~ 503 (592)
T 1f5n_A 482 LTEKEKEIEVERVKAESAQASA 503 (592)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555443
No 256
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=34.22 E-value=91 Score=24.46 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019884 61 EKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 61 EKd~~i~~Lq~r~~~le~~L 80 (334)
|-=.....|.++|.+++..+
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi 50 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEI 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 257
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=34.13 E-value=2.1e+02 Score=23.93 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=15.3
Q ss_pred HHHHHhhhhhHHHHHHHHHH
Q 019884 39 IAISTRVSDLESEHSALRSQ 58 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~ 58 (334)
..|-++...||.|...|.++
T Consensus 5 ~~i~~~l~~Leae~q~L~~~ 24 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQ 24 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888654
No 258
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=34.02 E-value=79 Score=25.12 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019884 86 QAQADKERLSKENEALTNTV 105 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~Tv 105 (334)
.+++||.+|-++...|-.-+
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi 62 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEI 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555554444443333
No 259
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=33.81 E-value=63 Score=26.45 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=20.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 76 (334)
-.|+-.||+|-=.|=.++..++-.|.+|..||.+|
T Consensus 55 h~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 55 WDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 34555566665556566666666666666666554
No 260
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=33.79 E-value=91 Score=21.35 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 019884 85 GQAQADKERLSKENEA 100 (334)
Q Consensus 85 ~~a~~e~~kL~kE~~s 100 (334)
-.+++||+||-+|-..
T Consensus 3 ~~~L~ENekLhk~ie~ 18 (37)
T 1t6f_A 3 YEALKENEKLHKEIEQ 18 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567777777766443
No 261
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=33.27 E-value=25 Score=26.58 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHHHHHhh
Q 019884 280 RLSYEQFAIFLANVKELNA 298 (334)
Q Consensus 280 RLSYEQFsaFLANIKELNA 298 (334)
-|+.|||.+|.++|-+.++
T Consensus 43 sL~~~qw~~l~~~~~~I~~ 61 (66)
T 1pcf_A 43 SLNPEQWSQLKEQISDIDD 61 (66)
T ss_dssp EECHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 5999999999999999875
No 262
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=33.01 E-value=95 Score=22.01 Aligned_cols=10 Identities=40% Similarity=0.394 Sum_probs=5.7
Q ss_pred hhhHHHHHHH
Q 019884 27 FEQLDVARKI 36 (334)
Q Consensus 27 yEQLdlArkI 36 (334)
.|||.||-|.
T Consensus 4 EEq~ALA~km 13 (46)
T 2rr9_C 4 EEQFALALKM 13 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3677666443
No 263
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=32.90 E-value=1.2e+02 Score=24.68 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=17.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDS 64 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~ 64 (334)
|+--|..+.|.|+..||.+++|...
T Consensus 8 ~~~~~~~~~e~e~~~l~~~~~el~~ 32 (125)
T 1joc_A 8 ALLERCLKGEGEIEKLQTKVLELQR 32 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5566777788888888877665443
No 264
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=32.72 E-value=1.2e+02 Score=30.16 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=18.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~ 73 (334)
|...|..||..+..|-+.-.+-.+.|..|+.-+
T Consensus 36 V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~ 68 (411)
T 3ghg_C 36 VDKDLQSLEDILHQVENKTSEVKQLIKAIQLTY 68 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 445556666666665555555555555555443
No 265
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.46 E-value=2.3e+02 Score=23.92 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~ 121 (334)
||.+..+-..-|.+++...+.-..-|..|-..|-..-.+......+|..|...|...+++ -.+++|.+||.
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~---a~ae~erlr~~ 100 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQD---ASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Confidence 344444444444444444444444444444444311111122234444444444443222 23445555554
No 266
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=32.35 E-value=31 Score=26.74 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (334)
.=|..++..+.+|...++-|-.-|++|.|+-.
T Consensus 36 ~LL~EsEatnarL~eq~~lLK~EIRRlERnqe 67 (71)
T 3bbp_D 36 GLLRETEATNAILMEQIKLLKSEIRRLERNQE 67 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHhhHh
Confidence 44557888888899999999999999988743
No 267
>1wlm_A Protein CGI-38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.39.1.11
Probab=32.14 E-value=25 Score=30.40 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=24.6
Q ss_pred hcCCHHHHHHHHHHHHHHhhccccHHHHHH
Q 019884 279 NRLSYEQFAIFLANVKELNAHKQTKEETLR 308 (334)
Q Consensus 279 sRLSYEQFsaFLANIKELNAhkQTREETL~ 308 (334)
.||.||||-.+|+.|-+-.....+.||.|.
T Consensus 75 rkI~f~qF~~aL~~lA~kr~kg~~~~e~~~ 104 (151)
T 1wlm_A 75 RVINYEEFKKALEELATKRFKGKSKEEAFD 104 (151)
T ss_dssp SEEEHHHHHHHHHHTHHHHSSSCCHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 359999999999988776666789998776
No 268
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=32.13 E-value=2.1e+02 Score=23.50 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
.++..+.+|++.|.......-..|..|...|.+|-+=-..|
T Consensus 44 ~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 44 KSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 44457778888888877777777888877777775544333
No 269
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=31.90 E-value=1.5e+02 Score=30.76 Aligned_cols=39 Identities=8% Similarity=0.194 Sum_probs=21.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
..+-..+|..+..||..+.+.++.|..|++.-+..+-.+
T Consensus 12 ~~k~~ei~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~~y 50 (596)
T 1bg1_A 12 TEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNY 50 (596)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344455566666666666666665555555555444333
No 270
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=31.62 E-value=1.9e+02 Score=22.79 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019884 60 AEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 60 aEKd~~i~~Lq~r~~~le~~L~ 81 (334)
.|=...+.+|++-+..|+.++.
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~ 60 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSII 60 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777665
No 271
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=31.25 E-value=88 Score=30.48 Aligned_cols=68 Identities=15% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHH
Q 019884 55 LRSQLAEKDSRIAELQSQ----IESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRD-------VSKLEVFRKT 121 (334)
Q Consensus 55 LR~~laEKd~~i~~Lq~r----~~~le~~L~--~rL~~a~~e~~kL~kE~~sLa~TvKKL~RD-------vaKLE~FKk~ 121 (334)
++--....+...+.|+.| +..+|.-+. .+.+.+..+.+.|..|++.++..|+++.++ +++...+|..
T Consensus 4 ~~~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~ 83 (425)
T 2dq3_A 4 INLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEE 83 (425)
T ss_dssp HHHHHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHH
Q ss_pred H
Q 019884 122 L 122 (334)
Q Consensus 122 L 122 (334)
|
T Consensus 84 ~ 84 (425)
T 2dq3_A 84 I 84 (425)
T ss_dssp H
T ss_pred H
No 272
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=30.94 E-value=83 Score=24.98 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 86 QAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
.|++||++|.++...+-.-+-.|..
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~ 59 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRK 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666676666665555444433333
No 273
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=30.87 E-value=1.7e+02 Score=23.66 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 019884 91 KERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 91 ~~kL~kE~~sLa~TvKKL~ 109 (334)
+..|...+.+...+|+||.
T Consensus 69 ~~~l~~~k~~F~~~~~~~~ 87 (93)
T 3sjb_C 69 KDEIQSENKAFQAHLHKLE 87 (93)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555553
No 274
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=30.81 E-value=2e+02 Score=23.27 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 019884 62 KDSRIAELQSQI 73 (334)
Q Consensus 62 Kd~~i~~Lq~r~ 73 (334)
|...|.+|.+.+
T Consensus 21 kq~~id~lke~~ 32 (94)
T 3jsv_C 21 KQELIDKLKEEA 32 (94)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 333333333333
No 275
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=30.63 E-value=45 Score=24.93 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=15.7
Q ss_pred HhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAE--KDSRIAELQSQIESIY 77 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laE--Kd~~i~~Lq~r~~~le 77 (334)
+||..||..+..|-.++.- ---.|.+|..+.+.|-
T Consensus 2 srvkaleekvkaleekvkalggggrieelkkkweelk 38 (67)
T 1lq7_A 2 SRVKALEEKVKALEEKVKALGGGGRIEELKKKWEELK 38 (67)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4666666655544333210 0112455555554443
No 276
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=30.45 E-value=78 Score=29.32 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=13.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 76 (334)
-+||..+|.-++.|-..+.|=.......++++-.+
T Consensus 5 nsRvd~~EErIs~le~rleei~q~eq~~ekrik~n 39 (233)
T 2yko_A 5 RSRCDQLEERVSAAEDEINEIKREGKFREKRIKRN 39 (233)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333333333333
No 277
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=30.28 E-value=57 Score=27.12 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=27.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 78 (334)
+..|+..|+..+..|...+.++...|..++..+..+..
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777766665543
No 278
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=30.06 E-value=75 Score=21.33 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=5.1
Q ss_pred hhhhhHHHHHHH
Q 019884 44 RVSDLESEHSAL 55 (334)
Q Consensus 44 RVs~LE~E~~~L 55 (334)
||++||..+..|
T Consensus 1 RMnQLEdKVEel 12 (33)
T 2wq1_A 1 RMKQLEDKIEEN 12 (33)
T ss_dssp CHHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 344444444333
No 279
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=29.80 E-value=1.6e+02 Score=21.21 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
|+.++..|.+++..=+.+++.+...+..+...+. ...+++.....-..+|.+.|.+|.+
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le----~~~~q~~~~~~~i~~Le~k~~~l~~ 61 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAE----ACSRQHRLDQDKIEALSSKVQQLER 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHhhhhHHHhHHHHHHHHHHHHHH
Confidence 5666666666666666666666666665554443 3323333333334445555555544
No 280
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=29.67 E-value=1.9e+02 Score=22.07 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 48 LESEHSALRSQLAEKDSRIAELQSQIE 74 (334)
Q Consensus 48 LE~E~~~LR~~laEKd~~i~~Lq~r~~ 74 (334)
|+.|...++..+.+.+..+..++..+.
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~ 29 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQ 29 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 281
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=29.50 E-value=3.4e+02 Score=25.04 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=24.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
|..||+-|=.|++.+=...+.+.+....-=+.|-..|..++
T Consensus 67 IsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~svq 107 (234)
T 3plt_A 67 VTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQ 107 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666666666665555554455555555555
No 282
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=29.41 E-value=76 Score=26.56 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=49.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019884 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~F 118 (334)
..++.++..++.|+..+-.--.+|+.....|. + |+ -|+..+.+..+|+.+.-|+|.- .-|+.....-
T Consensus 21 ~~~~kkl~~~~~el~~iekGFL~kel~~eal~-k---ld----Krik~~~E~~MK~LE~lDsl~i-----~e~~~~~R~k 87 (114)
T 1hx1_B 21 EKIADQLEELNKELTGIQQGFLPKDLQAEALC-K---LD----RRVKATIEQFMKILEEIDTLIL-----PENFKDSRLK 87 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHH-T---TH----HHHHHHHHHHHHHHHHHTTCCC-----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccccHhHHHHHH-H---HH----HHHHHHHHHHHHHHHHhhcccC-----ChhHHHHHHH
Confidence 55666666666666666666666654433332 1 22 5667888888998888888753 5556666666
Q ss_pred HHHHHhhccc
Q 019884 119 RKTLVQSLKD 128 (334)
Q Consensus 119 Kk~LmqSLqe 128 (334)
||.|+.-+|.
T Consensus 88 RK~lV~~iQ~ 97 (114)
T 1hx1_B 88 RKGLVKKVQA 97 (114)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 283
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.38 E-value=43 Score=21.37 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 53 SALRSQLAEKDSRIAELQSQIESI 76 (334)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~r~~~l 76 (334)
++|+++-+.-..+|+.|+=.+..|
T Consensus 3 rrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHh
Confidence 445555444444444444444433
No 284
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=29.25 E-value=3.7e+02 Score=25.40 Aligned_cols=18 Identities=11% Similarity=0.121 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019884 64 SRIAELQSQIESIYSSLS 81 (334)
Q Consensus 64 ~~i~~Lq~r~~~le~~L~ 81 (334)
.....||+++..++.-|.
T Consensus 397 ~~~~~~~~~~~~~~~~~~ 414 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQ 414 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHH
Confidence 344445555555554444
No 285
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=29.09 E-value=76 Score=26.89 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 92 ERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
..|.+.++.|-+-|-+|..+|.+||
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4466666667777777766666654
No 286
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=28.98 E-value=1.9e+02 Score=21.93 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=36.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKE 92 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~ 92 (334)
..|+..++.|+..|+.+.+.-...|.+.+.|+.+|- .|+..++-.++
T Consensus 9 ~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLs----HRiLkvlv~QE 55 (65)
T 3t97_B 9 QTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLS----HRTLQVLIKQE 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHH
Confidence 467888899999999999998889999888877655 45555554444
No 287
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=28.43 E-value=34 Score=31.40 Aligned_cols=28 Identities=11% Similarity=0.309 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (334)
...++..+|.+|+..+.+.+.+|.+++.
T Consensus 152 ~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 152 SSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555444444444433
No 288
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.27 E-value=2.2e+02 Score=22.53 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=9.5
Q ss_pred HHHHHHHhhhhhHHH
Q 019884 37 TSIAISTRVSDLESE 51 (334)
Q Consensus 37 ts~A~atRVs~LE~E 51 (334)
..-|+..|-...|.+
T Consensus 18 aggaFgKrEaA~Ee~ 32 (84)
T 1gmj_A 18 AGGAFGKREQAEEER 32 (84)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHhHHH
Confidence 345666777777776
No 289
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=28.12 E-value=67 Score=26.28 Aligned_cols=6 Identities=17% Similarity=0.130 Sum_probs=2.2
Q ss_pred HHHHHH
Q 019884 72 QIESIY 77 (334)
Q Consensus 72 r~~~le 77 (334)
++..||
T Consensus 57 ~I~~LE 62 (106)
T 1j1d_B 57 TIYNLE 62 (106)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 290
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.09 E-value=1e+02 Score=23.48 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 53 SALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
..|...+..||..|.+|+..+..-+..+
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI 41 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEI 41 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 4566778889988888887666544433
No 291
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=27.99 E-value=2.6e+02 Score=23.14 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019884 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 51 E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (334)
++..|+.++..=+..+.+||..++.+-.+.+ ++..+|+..+..+..-+.+|++|-.
T Consensus 46 qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq-------~qL~~Lt~~Re~V~~eL~rLQ~eNd 101 (112)
T 1x79_B 46 QISALVLRAQASEILLEELQQGLSQAKRDVQ-------EQMAVLMQSREQVSEELVRLQKDND 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444444444445555555444444443 3344555555555555555555543
No 292
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.83 E-value=1e+02 Score=20.76 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 019884 86 QAQADKERLSKENEAL 101 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sL 101 (334)
..+.+|..|.+|...|
T Consensus 12 eLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 12 ELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHH
Confidence 3334444444444443
No 293
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=27.78 E-value=2.5e+02 Score=27.40 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=15.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
.++..|...+..|+.-| .+..+++|+..|+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~-----~l~~~~~r~~el~~~~~ 42 (365)
T 1gqe_A 9 NRIQDLTERSDVLRGYL-----DYDAKKERLEEVNAELE 42 (365)
T ss_dssp HHHHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHhc
Confidence 34444444444444332 13345556666665554
No 294
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=27.63 E-value=50 Score=23.81 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 86 QAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
...++-+.|.+||..|...++.|..
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666777777777777666654
No 295
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.57 E-value=2.5e+02 Score=22.88 Aligned_cols=86 Identities=22% Similarity=0.307 Sum_probs=46.6
Q ss_pred HHHHHHHHHH--HHHHhhhhhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----
Q 019884 30 LDVARKITSI--AISTRVSDLESEH---------SALRSQLAEKDSRIAELQSQIESIYSSLSDKL----GQAQAD---- 90 (334)
Q Consensus 30 LdlArkIts~--A~atRVs~LE~E~---------~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL----~~a~~e---- 90 (334)
-+|...|.+. -|-+-|+.|+.-+ ..||.+|.+.-+.+.+|=+..+..=..|. .+ ....+.
T Consensus 13 ~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~-~~~~~~~~~~~r~~k~ 91 (130)
T 2dnx_A 13 SSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELG-SLPLPLSTSEQRQQRL 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccchHHHHHH
Confidence 4466666554 2455688888775 56777777776666666555554333332 11 011112
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 91 -KERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 91 -~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
.+||.+|=....+.-.+++|.++.-|
T Consensus 92 q~~KL~~dF~~~L~~FQ~~Qr~~aeke 118 (130)
T 2dnx_A 92 QKERLMNDFSAALNNFQAVQRRVSEKE 118 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555556666555544
No 296
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=27.50 E-value=1.4e+02 Score=21.14 Aligned_cols=9 Identities=44% Similarity=0.346 Sum_probs=5.2
Q ss_pred hhhHHHHHH
Q 019884 27 FEQLDVARK 35 (334)
Q Consensus 27 yEQLdlArk 35 (334)
.|||.||-|
T Consensus 7 EEq~ALA~r 15 (45)
T 3a1q_C 7 EEQFALALK 15 (45)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 467766543
No 297
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=27.30 E-value=1.8e+02 Score=25.56 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019884 61 EKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 61 EKd~~i~~Lq~r~~~le~~L~ 81 (334)
--+.++.+|++|+..++..|+
T Consensus 73 sA~~~~d~lekKl~~aq~kL~ 93 (158)
T 3tul_A 73 TAKSVYDAATKKLTQAQNKLQ 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 346778888888888887775
No 298
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=27.27 E-value=3e+02 Score=23.73 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=29.1
Q ss_pred HhhhhhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQL--------------AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~l--------------aEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~T 104 (334)
+++..||.|+..+=..| ..=...|..|..++..+| .|.-.|.-...+|.++.+.|-..
T Consensus 42 ~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE----~RAE~AERsv~kLEk~id~lEd~ 113 (155)
T 2efr_A 42 GKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE----TRAEFAERSVTKLEKSIDDLEDE 113 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655433333 333344444444444444 33335555556666666666543
No 299
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=27.23 E-value=2.5e+02 Score=22.79 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=8.7
Q ss_pred HHHHhhhhhHHHHH
Q 019884 40 AISTRVSDLESEHS 53 (334)
Q Consensus 40 A~atRVs~LE~E~~ 53 (334)
-+++=-+.||.|--
T Consensus 5 ~La~le~sLe~EK~ 18 (101)
T 1d7m_A 5 RLAGLENSLESEKV 18 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhc
Confidence 35556677777743
No 300
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=27.19 E-value=1.1e+02 Score=26.02 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=23.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 78 (334)
+-.|+..||.|-=.|=.++..++-.|.+|..||..|-.
T Consensus 70 Lh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 70 LHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 34455666666666666666666666666666666543
No 301
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=26.89 E-value=1.9e+02 Score=21.20 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019884 62 KDSRIAELQSQIESIYS 78 (334)
Q Consensus 62 Kd~~i~~Lq~r~~~le~ 78 (334)
|+.++++|+.++..+|.
T Consensus 4 ~~~~~~~le~kl~~lEn 20 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFEN 20 (65)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555554
No 302
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=26.83 E-value=1.9e+02 Score=21.28 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=26.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~ 79 (334)
+...|+..-.....-+.++.|+.+.+..|++|-+.|...
T Consensus 9 v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~ 47 (63)
T 1urq_A 9 VKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSS 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666667777788887777777776665543
No 303
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=26.71 E-value=1.4e+02 Score=19.98 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=13.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 45 VSDLESEHSALRSQLAEKDSRIAELQSQIES 75 (334)
Q Consensus 45 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~ 75 (334)
|+.|...++.|+.+..----.+..|.++++.
T Consensus 3 vsalkekvsalkeqflmlmfkvsalkekvsa 33 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKVSALKEKVSA 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455554443333333444445443
No 304
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.68 E-value=2.4e+02 Score=22.30 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 019884 65 RIAELQSQIESIYSSLS---DKLGQAQADKERLSK 96 (334)
Q Consensus 65 ~i~~Lq~r~~~le~~L~---~rL~~a~~e~~kL~k 96 (334)
.|.+|+-||+.+|.+=. -+|+..-+|...|++
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~ 61 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQE 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34455555555554322 455555555544443
No 305
>1s21_A ORF2; predominantly beta-strand, chaperone; 2.00A {Pseudomonas syringae PV} SCOP: d.166.1.4
Probab=26.58 E-value=40 Score=30.78 Aligned_cols=47 Identities=26% Similarity=0.137 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCCccCCccccccccCCCCccCCCCCCCCCCCC--CccchHHHHHHHHhcCCHHHH
Q 019884 209 SASVSPTKTPKPVSPRRHSISFSTSRGMFDDRSSILSSVHSSHSSISSSESGSQTGK--TRVDGKEFFRQVRNRLSYEQF 286 (334)
Q Consensus 209 s~s~sP~~~s~~~sP~~~s~~~s~t~~~~~~~~~~~~~~~ss~~s~Spp~~~s~~gr--~rVDGKEFFRQARsRLSYEQF 286 (334)
-+|+|...||.|+||+..||+.+|+ ++..|. +.|+ .||-|+=
T Consensus 8 ~tsgs~~~ysp~~sp~~~sg~~~~~--------------------------~~~gg~~ltSV~----------qLs~~~r 51 (206)
T 1s21_A 8 NSGGVSRTYSPPTSPVYGSGVSSPS--------------------------RFVGQYTLTSIH----------QLSSEER 51 (206)
T ss_dssp -----------------------CC--------------------------TTTTCCCCCBGG----------GSCHHHH
T ss_pred CCCCCccccCCCCCcccccCCCCcc--------------------------cccCCceecchh----------hCCHHHH
Confidence 4577888899999998776664331 222333 7776 5999998
Q ss_pred HHHHH
Q 019884 287 AIFLA 291 (334)
Q Consensus 287 saFLA 291 (334)
.+||.
T Consensus 52 ~~fL~ 56 (206)
T 1s21_A 52 ENFLD 56 (206)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88886
No 306
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=26.22 E-value=25 Score=30.03 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 019884 92 ERLSKENEALT 102 (334)
Q Consensus 92 ~kL~kE~~sLa 102 (334)
.+-..|+..|+
T Consensus 76 ~~~~eEKrkLA 86 (130)
T 3cl3_D 76 QAASEEKRKLA 86 (130)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 307
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=26.20 E-value=1e+02 Score=30.95 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=19.9
Q ss_pred HHH-HHHHhhhHHHHHHHHHHHHhhccc
Q 019884 102 TNT-VRKLQRDVSKLEVFRKTLVQSLKD 128 (334)
Q Consensus 102 a~T-vKKL~RDvaKLE~FKk~LmqSLqe 128 (334)
... ++.|..++..||.--+.|-..|++
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 889999998888776666555544
No 308
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=26.16 E-value=79 Score=24.27 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 019884 271 KEFFRQVRNRLSYEQFAIFLANVKELNAH 299 (334)
Q Consensus 271 KEFFRQARsRLSYEQFsaFLANIKELNAh 299 (334)
|-|.+|||..-=||.-.-.=.|++||+..
T Consensus 33 ~~yI~qAk~~~r~DEV~tLe~NLrEL~~e 61 (69)
T 1z0k_B 33 TSFIRQAKAAGRMDEVRTLQENLRQLQDE 61 (69)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999864
No 309
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=26.01 E-value=2.8e+02 Score=22.92 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH
Q 019884 66 IAELQSQIESIYSSLS---DKLGQAQA 89 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~---~rL~~a~~ 89 (334)
|.+||+.+...|.+|. -||+.|++
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~ 63 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEK 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666665 45555554
No 310
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=25.83 E-value=2.4e+02 Score=22.14 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHH
Q 019884 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERL-SKENEALTNTVRKLQRDVSKLEV 117 (334)
Q Consensus 60 aEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL-~kE~~sLa~TvKKL~RDvaKLE~ 117 (334)
.+|...|.+++..+.+++.-|. +-.-|...+ ...|..+.+.|+.-.+||++|+.
T Consensus 34 eerk~~i~~ie~~l~EA~ell~----qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLE----QMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH----HHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4666667777766666665554 222222222 34678888889999999888754
No 311
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=25.77 E-value=95 Score=20.96 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=5.2
Q ss_pred hhhhhHHHHHHH
Q 019884 44 RVSDLESEHSAL 55 (334)
Q Consensus 44 RVs~LE~E~~~L 55 (334)
||++||..+..|
T Consensus 2 RM~QLEdKVEeL 13 (34)
T 1uo4_A 2 RMKQIEDKGEEI 13 (34)
T ss_dssp -CHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 455555444433
No 312
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.73 E-value=2.4e+02 Score=22.53 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
..+..+-+.....+.+|.-++-|++.+=-.|
T Consensus 58 ~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 58 ASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666677777888888888887765444
No 313
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=25.71 E-value=2.4e+02 Score=25.28 Aligned_cols=11 Identities=9% Similarity=0.217 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 019884 50 SEHSALRSQLA 60 (334)
Q Consensus 50 ~E~~~LR~~la 60 (334)
.++..++.+|+
T Consensus 69 ~~~~~~~a~l~ 79 (341)
T 3fpp_A 69 NQIKEVEATLM 79 (341)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 314
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.69 E-value=1.6e+02 Score=24.25 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 53 SALRSQLAEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~r~~~le~ 78 (334)
..|.+.|++....|.+|..++..|..
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~ 32 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKG 32 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655554443
No 315
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=25.66 E-value=89 Score=26.83 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019884 82 DKLGQAQADKERLSKENEALTNTVRKLQR 110 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~TvKKL~R 110 (334)
.+|..|.+..+||.|-|.++-.+++-.+-
T Consensus 59 kql~~Ake~~eKlkKKrsSv~gs~~~aHs 87 (136)
T 3ter_A 59 KEMKEAIEMVDRLQKKQGSVLSSLKLATG 87 (136)
T ss_dssp HHHHHHHHHHHHHHHC------CCCCCCS
T ss_pred HHHHHHHHHHHHHHHhhhchheeeeeecC
Confidence 56678889999999988888877765544
No 316
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=25.62 E-value=1.1e+02 Score=28.14 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=15.5
Q ss_pred HHHhhhHHHHHHHHHHHHhhc
Q 019884 106 RKLQRDVSKLEVFRKTLVQSL 126 (334)
Q Consensus 106 KKL~RDvaKLE~FKk~LmqSL 126 (334)
.++.+-.+.|+.+|+.||+-+
T Consensus 184 ~~~~~~~~~l~~~k~~ll~~~ 204 (464)
T 2y7c_A 184 ARFEQIPQILKRFRQAVLGGA 204 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555677888999999875
No 317
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=25.56 E-value=5.5e+02 Score=26.19 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHH
Q 019884 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL-TNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 49 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sL-a~TvKKL~RDvaKLE~FKk~L 122 (334)
+++++.-...|+.=....+++++.++..=++++++=.....||+.+.+.|... +.-=.+|.+=-..|+.+++.+
T Consensus 8 q~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~ 82 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDL 82 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 318
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=25.19 E-value=1.3e+02 Score=28.52 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=35.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
.|+..|...+..++.++-..|+.++++-.++-.||..++
T Consensus 216 ~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~ 254 (268)
T 2yo3_A 216 QKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIA 254 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999998886
No 319
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=25.15 E-value=19 Score=30.57 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=37.7
Q ss_pred CCCChHHHHhcCCCChhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 019884 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLA 60 (334)
Q Consensus 11 ~f~Lp~eilavLPsDPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~la 60 (334)
+-.=|+||+++=|.|=|++|.|..-++ .+|.+.|.+=+.++|....
T Consensus 93 ~G~tp~eIl~~d~~~f~~~lGL~~~LS----psR~nGl~am~~~ik~~a~ 138 (141)
T 3g0m_A 93 HQMTAQDIVHFDVRPWFEKMALAQHLT----PSRSQGLEAMIRAIRAKAA 138 (141)
T ss_dssp TTCBHHHHHHCCCHHHHHHHTCGGGSC----HHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHhCCHHHHHHHcCchhhcC----chHHHHHHHHHHHHHHHHH
Confidence 345699999997778899999987775 6899999999999887653
No 320
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=25.14 E-value=1.4e+02 Score=25.47 Aligned_cols=66 Identities=27% Similarity=0.390 Sum_probs=26.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDva 113 (334)
++.-+++.+|+|...|++++. -.|..|+=++.++|.+|. .|-. +.+|+.||+ .|-..-.+|-.|..
T Consensus 34 ~~e~~~~~~~~Elee~kqq~~---~~~d~L~lQ~esmeaalkmEr~~-~~eEKrkLA----qLQ~AY~~LfqeYd 100 (130)
T 3cl3_D 34 AASEQARQLESEREALQQQHS---VQVDQLRMQGQSVEAALRMERQA-ASEEKRKLA----QLQVAYHQLFQEYD 100 (130)
T ss_dssp -----------------CTTT---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHH
Confidence 444555666666666655442 345556667888888887 3332 444555554 24444455555544
No 321
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=25.04 E-value=5.3e+02 Score=25.83 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=49.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH--HH-HHHHHHHH----HHH-HHH
Q 019884 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS-------------SLSDKL--GQ-AQADKERL----SKE-NEA 100 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~-------------~L~~rL--~~-a~~e~~kL----~kE-~~s 100 (334)
.-+|-.|..+-+.|..++.+-.+....+.+++..+-. .+..++ .. .-++...| .+| -..
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKD 115 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHH
Confidence 3455556666555555555554444455544443221 000000 00 22445566 667 889
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019884 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 101 La~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (334)
|...+|.|...+..||.=-..++.+|-+-
T Consensus 116 l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 144 (484)
T 3lss_A 116 LSDQVAGLAKEAQQLEEERDKLMLNVGNI 144 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999888899888654
No 322
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=24.88 E-value=2.6e+02 Score=22.06 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=39.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAEL------QSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~L------q~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaK 114 (334)
-+.-....|.|...|...+..|=..|..+ ...+..+|..|. .|.+=..++--|-.++-.++|. .=.+|
T Consensus 13 mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ld----EA~eLl~qMelE~r~~p~s~R~--~~~~k 86 (102)
T 2qyw_A 13 SSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQ----EANETLAEMEEELRYAPLTFRN--PMMSK 86 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTSCHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCHHHHH--HHHHH
Confidence 34555666666666666665555554332 122333333332 5555555555566666555544 33466
Q ss_pred HHHHHHHH
Q 019884 115 LEVFRKTL 122 (334)
Q Consensus 115 LE~FKk~L 122 (334)
|..+|+.|
T Consensus 87 lr~Yk~dL 94 (102)
T 2qyw_A 87 LRNYRKDL 94 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666665
No 323
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=24.70 E-value=1.1e+02 Score=30.16 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhHHHHHH-HHHHHH
Q 019884 100 ALTNTVRKLQRDVSKLEV-FRKTLV 123 (334)
Q Consensus 100 sLa~TvKKL~RDvaKLE~-FKk~Lm 123 (334)
-+...++.|...+.+||. ++.-|+
T Consensus 91 ~a~~e~~~l~~~l~~le~~l~~lLl 115 (371)
T 1zbt_A 91 MAKEELKNSKVAKEEYEEKLRFLLL 115 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345567788888888875 554443
No 324
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=24.59 E-value=93 Score=25.73 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
...+...+|.+|+..|...+++|.+.++..+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777777777766653
No 325
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=24.50 E-value=41 Score=34.19 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=9.5
Q ss_pred hccccHHHHHHhhhhhcC
Q 019884 298 AHKQTKEETLRKTDEVFG 315 (334)
Q Consensus 298 AhkQTREETL~KA~eIFG 315 (334)
.-|||.-|-|..-.--=|
T Consensus 533 ~~k~t~~D~lh~en~~~G 550 (575)
T 2i1j_A 533 ETKETAMDKIHRENVRQG 550 (575)
T ss_dssp GGGCCHHHHHHHHHHHTT
T ss_pred hhhcchhHHHHHHhhhcC
Confidence 346666666654444444
No 326
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=24.48 E-value=50 Score=26.92 Aligned_cols=55 Identities=13% Similarity=0.299 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 49 ESEHSALRSQLAEKD---SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (334)
Q Consensus 49 E~E~~~LR~~laEKd---~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKK 107 (334)
..++..|++.++.+. ..|.-|+.++.-....+. .=..+-++|..|+..|...+-.
T Consensus 37 Q~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~----aERaaREk~~~EKe~L~~ql~~ 94 (96)
T 3fx0_A 37 QEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERQAREKLAEKKELLQEQLEQ 94 (96)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTSSTTSCC------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHh
Confidence 445666666666555 555556665555544443 3344556666676666655443
No 327
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=24.48 E-value=1.1e+02 Score=22.68 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019884 66 IAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (334)
..||++++.+|..+|- -|+..+... | ||- ..++...||+|++.+.-+
T Consensus 11 ~~EL~~~l~elk~ELf~LR~q~atgq---l--~n~---~~ir~vRr~IARi~Tvl~ 58 (66)
T 1r73_A 11 DEELKNLLEEKKRQLMELRFQLAMGQ---L--KNT---SLIKLTKRDIARIKTILR 58 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---C--CCH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC---c--cCc---HHHHHHHHHHHHHHHHHH
Confidence 4567777777766665 444444421 1 221 246777889999877644
No 328
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=24.14 E-value=4.6e+02 Score=27.11 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
|.+.++..+-..+|..+..||....+.++.+..|++.-+.++-.++
T Consensus 5 ~~~~~~~~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~F~~~y~ 50 (585)
T 1y1u_A 5 VLVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQ 50 (585)
T ss_dssp ------CCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3444555666667777777777777777777777666655555544
No 329
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.12 E-value=38 Score=30.89 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019884 86 QAQADKERLSKENEALTNTVRKLQRD 111 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL~RD 111 (334)
...+||++|.+|+..|.....+|..-
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l 48 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADL 48 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666665555444444333
No 330
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=24.12 E-value=3.5e+02 Score=23.37 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 019884 98 NEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (334)
Q Consensus 98 ~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 130 (334)
.+.....|.++++--.+++.-...++..||+-+
T Consensus 176 ~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~le 208 (276)
T 2v0o_A 176 TDTYKLYVEKYALAKADFEQKMTETAQKFQDIE 208 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666555555554555555554433
No 331
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=23.95 E-value=3.1e+02 Score=26.59 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019884 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 89 ~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (334)
++...|..|-..|...+|.|...+..+|.=-..++.+|-+-
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 104 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44556667777777777777777777776666677766554
No 332
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=23.91 E-value=2.2e+02 Score=22.94 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019884 51 EHSALRSQLAEKDSRIAEL 69 (334)
Q Consensus 51 E~~~LR~~laEKd~~i~~L 69 (334)
++..||.++.+=|+.|-+|
T Consensus 13 ~L~~lR~~ID~ID~~il~L 31 (114)
T 3rmi_A 13 ELAYLRQSIDNFDITLIHI 31 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544443
No 333
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=23.69 E-value=2.9e+02 Score=26.67 Aligned_cols=21 Identities=5% Similarity=0.018 Sum_probs=10.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHH
Q 019884 39 IAISTRVSDLESEHSALRSQL 59 (334)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~l 59 (334)
.+++.++..+-..+..+|..+
T Consensus 74 ~~La~~~n~~~~~L~~~~~~~ 94 (463)
T 2d4y_A 74 EGLVNQFKTTDQYLRDQDKQV 94 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444433
No 334
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=23.45 E-value=1.7e+02 Score=22.66 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 019884 66 IAELQSQIESIYSSLS 81 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~ 81 (334)
+.+|++++..+|.+|.
T Consensus 14 L~~lR~~ID~iD~~Ll 29 (90)
T 2vkl_A 14 IDTLREEIDRLDAEIL 29 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555554
No 335
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=23.42 E-value=2.5e+02 Score=21.38 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019884 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 87 a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~L 122 (334)
.......|-.|-..+-..+-...++...|=..|-.|
T Consensus 31 ~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~L 66 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMAL 66 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444444444444445555554444433
No 336
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=23.40 E-value=3.2e+02 Score=22.69 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=18.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 40 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 78 (334)
.+...-..|..+...|...+........+|+.++..|+.
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~ 64 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALED 64 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444445555555544444444444455555544443
No 337
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.18 E-value=2e+02 Score=22.19 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019884 90 DKERLSKENEALTNTVRKL 108 (334)
Q Consensus 90 e~~kL~kE~~sLa~TvKKL 108 (334)
+...|..++..|-..+..|
T Consensus 67 ~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 67 EEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344555555555444443
No 338
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=23.01 E-value=1.4e+02 Score=23.15 Aligned_cols=34 Identities=15% Similarity=0.484 Sum_probs=18.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (334)
Q Consensus 43 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 76 (334)
..|..||..+..+++....-.--|.+||.+|..|
T Consensus 8 nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL 41 (74)
T 1avy_A 8 NKIKAIETDIASVRQEVNTAKGNISSLQGDVQAL 41 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhcccccchhhhheeeccccchhhhhhhhhHHH
Confidence 3566777777777766543333344444444433
No 339
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=23.00 E-value=1.1e+02 Score=27.68 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=9.1
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 019884 104 TVRKLQRDVSKLEVFRKTL 122 (334)
Q Consensus 104 TvKKL~RDvaKLE~FKk~L 122 (334)
.+|-|.+++-+...-+..|
T Consensus 55 ~arilAkelVR~Rk~~~rl 73 (218)
T 3frt_A 55 VCIVLAKEMIRSRKAVSKL 73 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444444
No 340
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=22.89 E-value=1.4e+02 Score=27.99 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019884 49 ESEHSALRSQLAEKDSRIAEL 69 (334)
Q Consensus 49 E~E~~~LR~~laEKd~~i~~L 69 (334)
+.|+..|+++..+-...|++|
T Consensus 184 ~~eie~L~~~~~~L~eEi~~L 204 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARL 204 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333333333
No 341
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=22.85 E-value=1.2e+02 Score=21.80 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=19.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 44 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
=++.||.+-..||.+|- ++|+++++..|+
T Consensus 14 ~l~~LEkqF~~LkEqlY---------~ERl~ql~~~Le 42 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLF---------RERLSQLRLRLE 42 (49)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 35678888888888775 345565555554
No 342
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=22.84 E-value=2e+02 Score=27.98 Aligned_cols=8 Identities=25% Similarity=0.380 Sum_probs=5.0
Q ss_pred ChhhhHHH
Q 019884 25 DPFEQLDV 32 (334)
Q Consensus 25 DPyEQLdl 32 (334)
+|-.++.+
T Consensus 162 ~~~~rr~~ 169 (517)
T 4ad8_A 162 SPANQRGL 169 (517)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHH
Confidence 67766554
No 343
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=22.75 E-value=1.1e+02 Score=22.19 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 019884 271 KEFFRQVRNRLSYEQFAIFLANVKELNAH 299 (334)
Q Consensus 271 KEFFRQARsRLSYEQFsaFLANIKELNAh 299 (334)
+-|.+|||..-=||.-.-.=.|++||+..
T Consensus 15 ~~~I~qAk~~~r~DEV~~Le~NLrEL~~e 43 (51)
T 1yzm_A 15 TSFIRQAKAAGRMDEVRTLQENLRQLQDE 43 (51)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999865
No 344
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=22.69 E-value=3.3e+02 Score=22.54 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHh
Q 019884 94 LSKENEALTNTVRKLQRDVSK-LEVFRKTLVQ 124 (334)
Q Consensus 94 L~kE~~sLa~TvKKL~RDvaK-LE~FKk~Lmq 124 (334)
...++..|...+||+.|-|.| ++.++..+|+
T Consensus 72 ~~ek~~~le~k~Kk~~~kV~Kl~~dl~~rI~~ 103 (109)
T 2fcw_A 72 SREKHALLEGRTKELGYTVKKHLQDLSGRISR 103 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345577888888888888888 4566666665
No 345
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.64 E-value=2.8e+02 Score=21.70 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019884 86 QAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 86 ~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
.|++||.+|-++-..+-.-+.+|
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi~~L 53 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEIARL 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555544444444433333
No 346
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=22.60 E-value=8.1 Score=31.89 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=16.5
Q ss_pred CCCCChHHHHhcCCCChhhhH
Q 019884 10 STFDLPEEVLQVLPSDPFEQL 30 (334)
Q Consensus 10 ~~f~Lp~eilavLPsDPyEQL 30 (334)
.-..|+|+-|--||.+=+-++
T Consensus 4 ~~~~~sd~~Lv~m~v~elN~~ 24 (107)
T 3a5t_A 4 MGTSLTDEELVTMSVRELNQH 24 (107)
T ss_dssp CCCCCCHHHHHHSCHHHHHHT
T ss_pred CCCCCCHHHHhcCCHHHHHHH
Confidence 356789999999998877665
No 347
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=22.50 E-value=1.2e+02 Score=20.38 Aligned_cols=8 Identities=25% Similarity=0.667 Sum_probs=3.1
Q ss_pred hhhhhHHH
Q 019884 44 RVSDLESE 51 (334)
Q Consensus 44 RVs~LE~E 51 (334)
||++||..
T Consensus 2 RMnQLEdK 9 (34)
T 3c3f_A 2 RMXQIEXK 9 (34)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 34444433
No 348
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=22.39 E-value=1.3e+02 Score=27.53 Aligned_cols=20 Identities=0% Similarity=0.305 Sum_probs=15.5
Q ss_pred HHhhhHHHHHHHHHHHHhhc
Q 019884 107 KLQRDVSKLEVFRKTLVQSL 126 (334)
Q Consensus 107 KL~RDvaKLE~FKk~LmqSL 126 (334)
++++-+.+|+.+|+.||+-+
T Consensus 398 ~~~~~~~~l~~lk~sLL~~a 417 (464)
T 2y7c_A 398 QVNNALARVNNLTQSILAKA 417 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555778999999999876
No 349
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=22.15 E-value=79 Score=22.49 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019884 64 SRIAELQSQIESIYSSLS 81 (334)
Q Consensus 64 ~~i~~Lq~r~~~le~~L~ 81 (334)
..|.+|+++|..||..|.
T Consensus 49 ~~~~~Le~ri~~Le~~l~ 66 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLT 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666666665553
No 350
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=21.92 E-value=2.2e+02 Score=23.89 Aligned_cols=47 Identities=9% Similarity=0.266 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019884 66 IAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~-~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE~FKk 120 (334)
.+||++++.+|..+|- -|+..+.... ||- ..++..-||+|++.+.-+
T Consensus 16 ~eEL~~~L~eLK~ELf~LRfq~atgql-----en~---~rIr~vRRdIARi~Tvl~ 63 (124)
T 3iz5_c 16 KDDLTKQLAELKTELGQLRIQKVASSG-----SKL---NRIHDIRKSIARVLTVIN 63 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCH-----HHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc-----cch---HHHHHHHHHHHHHHHHHH
Confidence 3567777777777766 4444444422 222 246777889999866543
No 351
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=21.83 E-value=2.3e+02 Score=20.49 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 47 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
.||+|+.+|+..+.+=.+.+.+|-.=+..+-.+++
T Consensus 1 ~le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~ 35 (51)
T 3kpe_A 1 HLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVL 35 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999888888888877777666664
No 352
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.68 E-value=2.7e+02 Score=22.00 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 58 QLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV 105 (334)
Q Consensus 58 ~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~Tv 105 (334)
.|.|-=..+..|.++|..++ ++++.|.+||..|.+.+
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~-----------eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKD-----------NEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 34444445556666655544 44455555555554443
No 353
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.51 E-value=2.9e+02 Score=21.51 Aligned_cols=58 Identities=12% Similarity=0.263 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 54 ~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
+||..+......++.|+.=-..|..--+ ...+-..+|..|.+.|-..|-.|.+-.+-|
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~----KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQ----KLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555433333332222 333444566677777666666666544444
No 354
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.39 E-value=3.8e+02 Score=22.80 Aligned_cols=40 Identities=15% Similarity=0.325 Sum_probs=21.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
+.+.++..+.|+.+|...|.+=...-.+.+.....++..|
T Consensus 37 l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 76 (135)
T 2e7s_A 37 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEV 76 (135)
T ss_dssp HHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356667777777777777644333333344444444433
No 355
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=21.38 E-value=4.8e+02 Score=27.03 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=16.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r 72 (334)
+..+|..+|.++..|.+.-.+=|=...+++.+
T Consensus 14 l~~~~q~~e~~~k~Le~~Qe~f~~~y~~~~~~ 45 (575)
T 1bf5_A 14 VKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR 45 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 44455555555555555544444444444433
No 356
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=21.38 E-value=2.2e+02 Score=24.03 Aligned_cols=51 Identities=25% Similarity=0.419 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHH
Q 019884 65 RIAELQSQIESIYSSLS--------DKLGQAQADKERLSKENEALTN-TVRKLQRDVSKL 115 (334)
Q Consensus 65 ~i~~Lq~r~~~le~~L~--------~rL~~a~~e~~kL~kE~~sLa~-TvKKL~RDvaKL 115 (334)
+|..|..|+..+.+.|. ..+.+.++|.++|.+|-.+|-. ...+|+..-.+|
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~l 70 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKL 70 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34555555555555444 5666777777777777777754 344455444443
No 357
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=21.31 E-value=2e+02 Score=21.69 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 019884 66 IAELQSQIESIYSSLS 81 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~ 81 (334)
+.+|+.++..+|.+|.
T Consensus 5 L~~lR~~ID~iD~~l~ 20 (90)
T 2d8d_A 5 IQALRKEVDRVNREIL 20 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555556665555554
No 358
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=21.15 E-value=1.1e+02 Score=25.37 Aligned_cols=12 Identities=17% Similarity=0.484 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 019884 69 LQSQIESIYSSL 80 (334)
Q Consensus 69 Lq~r~~~le~~L 80 (334)
|+.+|..++..|
T Consensus 12 L~~~i~~l~~~L 23 (122)
T 3viq_A 12 LEKEVRNLQEQL 23 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 359
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=21.10 E-value=4.9e+02 Score=26.57 Aligned_cols=14 Identities=14% Similarity=0.415 Sum_probs=7.6
Q ss_pred HHHHHHHhhhHHHH
Q 019884 102 TNTVRKLQRDVSKL 115 (334)
Q Consensus 102 a~TvKKL~RDvaKL 115 (334)
.+.++.|+..+..|
T Consensus 566 ~~~~~~~~~ei~~l 579 (592)
T 1f5n_A 566 QKESRIMKNEIQDL 579 (592)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555566555554
No 360
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=20.91 E-value=3e+02 Score=21.48 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019884 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAEL 69 (334)
Q Consensus 32 lArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~L 69 (334)
=.|++-+.|=-.=+..||.=..+|+.-+.||....+..
T Consensus 13 niR~LRA~arel~le~Lee~leKl~~VveERree~~~~ 50 (86)
T 3nr7_A 13 NIRTLRAQARESTLETLEEMLEKLEVVVNERREEESAA 50 (86)
T ss_dssp CHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555556655555555544433
No 361
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.88 E-value=2e+02 Score=21.91 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 59 LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (334)
Q Consensus 59 laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL 108 (334)
|..--+.|..|+++.. ...+++++|.+|+..|-..+..|
T Consensus 42 L~kA~~yI~~L~~~~~-----------~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 42 LTKAKLHIKKLEDSDR-----------KAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhC
No 362
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=20.74 E-value=6.1e+02 Score=24.95 Aligned_cols=27 Identities=11% Similarity=-0.018 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 54 ALRSQLAEKDSRIAELQSQIESIYSSL 80 (334)
Q Consensus 54 ~LR~~laEKd~~i~~Lq~r~~~le~~L 80 (334)
-|.....|=+.++.+|++.+...+.-.
T Consensus 239 Vv~~Da~EL~~V~~eL~~~~~~i~~~~ 265 (413)
T 4hpq_C 239 IVERDDKDLAAINSLLQDAAIDVASFV 265 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcchhhHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566666655555443
No 363
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=20.70 E-value=2.5e+02 Score=20.50 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (334)
Q Consensus 41 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 81 (334)
|.+++..|...+.+=-..|..-...|.+|+.++..|+..|+
T Consensus 33 y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 33 YKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 364
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=20.67 E-value=1.3e+02 Score=27.17 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019884 82 DKLGQAQADKERLSKENEALTN 103 (334)
Q Consensus 82 ~rL~~a~~e~~kL~kE~~sLa~ 103 (334)
+++.....+|.+|++||+.|..
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666778888888887764
No 365
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=20.56 E-value=2.5e+02 Score=23.31 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=16.2
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLA 60 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~la 60 (334)
+.++.+|+-|-..||++|-
T Consensus 14 aaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 14 VKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999986
No 366
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.55 E-value=2.3e+02 Score=19.90 Aligned_cols=20 Identities=10% Similarity=0.298 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019884 59 LAEKDSRIAELQSQIESIYS 78 (334)
Q Consensus 59 laEKd~~i~~Lq~r~~~le~ 78 (334)
++.-...|.+||.|+..||.
T Consensus 18 I~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 18 ITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334445666766666664
No 367
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=20.55 E-value=1.8e+02 Score=20.47 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 019884 59 LAEKDSRIAELQSQIESIYSSLS--DKLGQAQ 88 (334)
Q Consensus 59 laEKd~~i~~Lq~r~~~le~~L~--~rL~~a~ 88 (334)
.+||++.|..|++.+-.-|.-|. -||+++.
T Consensus 3 ~~ere~~i~~LreeLR~EEaKLvLLKKlrqSQ 34 (43)
T 2l2l_A 3 PEERERMIKQLKEELRLEEAKLVLLKKLRQSQ 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999988777776666 5555543
No 368
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.38 E-value=93 Score=24.95 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 019884 92 ERLSKENEALTNTVRKLQ 109 (334)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~ 109 (334)
..|.+|...|-..|++|+
T Consensus 17 ~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 17 EELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333333444444443
No 369
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=20.33 E-value=2.1e+02 Score=22.28 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 019884 66 IAELQSQIESIYSSLS 81 (334)
Q Consensus 66 i~~Lq~r~~~le~~L~ 81 (334)
+.+|+.++..+|.+|.
T Consensus 19 L~~lR~~ID~ID~~Ll 34 (91)
T 1ybz_A 19 LKLLRKEIDKIDNQII 34 (91)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555444
No 370
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.28 E-value=3.6e+02 Score=22.12 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019884 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (334)
Q Consensus 92 ~kL~kE~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 129 (334)
.-|.+-.+.|...+++|..++++++.--+++...|++-
T Consensus 101 ~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 101 SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567777888888888888887777776666543
No 371
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=20.17 E-value=67 Score=23.85 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019884 87 AQADKERLSKENEALTNTVRKLQRDVSKLE 116 (334)
Q Consensus 87 a~~e~~kL~kE~~sLa~TvKKL~RDvaKLE 116 (334)
.-.+-.++.+|-|.|.+..-++.++.-+||
T Consensus 27 ~~~~vI~~SQeLD~LIn~Y~k~~~~~~~~~ 56 (62)
T 2bzb_A 27 DHDKVLLFSRDLDKLINKFMNVKDKVHKLE 56 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCCCCCCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 445667888899999988887776655554
No 372
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.13 E-value=2.6e+02 Score=21.66 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=18.0
Q ss_pred HHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 019884 42 STRVSDLESEHSALRSQLA----EKDSRIAELQSQIESIYSS 79 (334)
Q Consensus 42 atRVs~LE~E~~~LR~~la----EKd~~i~~Lq~r~~~le~~ 79 (334)
--||.+||+-+..|..++| |=..--.-|..||..||..
T Consensus 6 EEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~ 47 (74)
T 3swf_A 6 EEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKF 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666655554443 2233333344444444443
No 373
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=20.11 E-value=3.1e+02 Score=21.30 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=30.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019884 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (334)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 77 (334)
+-.++..-+..=|.||++|+.-++=|..-.+-|.+.+-++.
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislN 59 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGT 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhH
Confidence 55566777777788888888888888777777777766554
No 374
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=20.03 E-value=6.3e+02 Score=24.84 Aligned_cols=59 Identities=8% Similarity=0.144 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019884 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (334)
Q Consensus 53 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~~rL~~a~~e~~kL~kE~~sLa~TvKKL~RDvaKL 115 (334)
...++-+.++...+.+|...|.....++. ..+.|...=..-.+.....+++++..|++|
T Consensus 311 ~~fk~~~~~~~~~~~~L~~~Y~~f~~aY~----~lL~Ev~RRr~~~~~~~~i~~~~~~~L~~l 369 (413)
T 4hpq_C 311 QKFKASCLEDIRQTRNLLDFYANFERSYH----NLLKEVKRRKETAAKLSQILKSCETQLEQI 369 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567777888888888888888887 344444444445666677777777777776
Done!