Query 019889
Match_columns 334
No_of_seqs 283 out of 1445
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:21:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 2.2E-54 4.8E-59 402.8 31.5 258 54-333 63-331 (365)
2 KOG0697 Protein phosphatase 1B 100.0 5.9E-54 1.3E-58 368.3 21.6 262 52-333 18-292 (379)
3 KOG0698 Serine/threonine prote 100.0 4.6E-50 9.9E-55 372.0 30.1 259 58-334 42-306 (330)
4 PTZ00224 protein phosphatase 2 100.0 1.2E-49 2.6E-54 372.2 29.8 245 52-333 18-272 (381)
5 PF00481 PP2C: Protein phospha 100.0 4E-51 8.6E-56 367.8 19.1 248 57-324 1-254 (254)
6 COG0631 PTC1 Serine/threonine 100.0 2.3E-48 4.9E-53 349.6 22.0 246 52-333 4-253 (262)
7 KOG0699 Serine/threonine prote 100.0 5.8E-46 1.3E-50 329.5 18.7 163 157-334 330-505 (542)
8 KOG0700 Protein phosphatase 2C 100.0 2.4E-43 5.2E-48 320.3 20.0 232 70-316 85-376 (390)
9 cd00143 PP2Cc Serine/threonine 100.0 2.5E-41 5.4E-46 303.1 29.7 250 57-331 2-254 (254)
10 PRK14559 putative protein seri 100.0 5.3E-42 1.1E-46 337.4 25.7 251 54-333 373-636 (645)
11 smart00332 PP2Cc Serine/threon 100.0 9.6E-40 2.1E-44 293.4 30.5 248 55-329 5-255 (255)
12 KOG1323 Serine/threonine phosp 100.0 3.5E-31 7.5E-36 233.3 21.4 229 87-332 141-487 (493)
13 KOG1379 Serine/threonine prote 99.9 3.7E-23 8E-28 182.7 20.4 207 69-331 90-330 (330)
14 KOG0618 Serine/threonine phosp 99.9 3.6E-23 7.8E-28 204.3 15.4 247 52-333 518-773 (1081)
15 PF13672 PP2C_2: Protein phosp 99.9 4.6E-22 1E-26 173.9 14.9 184 61-298 3-196 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 2.6E-18 5.6E-23 148.0 18.8 175 68-315 15-192 (193)
17 TIGR02865 spore_II_E stage II 99.7 2.4E-15 5.2E-20 153.5 20.4 205 53-331 549-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.6 6E-13 1.3E-17 114.4 20.8 180 89-332 3-193 (193)
19 COG2208 RsbU Serine phosphatas 98.5 1.7E-05 3.8E-10 75.2 20.1 178 89-332 174-366 (367)
20 COG3700 AphA Acid phosphatase 68.3 13 0.00028 31.3 5.2 49 270-319 71-130 (237)
21 PF09436 DUF2016: Domain of un 54.4 8.2 0.00018 27.3 1.5 21 266-286 23-43 (72)
22 PRK10693 response regulator of 48.8 1.9E+02 0.0041 26.4 10.1 45 136-184 208-254 (303)
23 PF06972 DUF1296: Protein of u 48.2 33 0.00072 23.2 3.5 26 284-312 19-44 (60)
24 PF05402 PqqD: Coenzyme PQQ sy 31.5 1.2E+02 0.0027 20.4 4.7 39 272-312 3-41 (68)
25 PF14014 DUF4230: Protein of u 28.2 2.6E+02 0.0057 22.4 6.8 41 256-296 75-115 (157)
26 PF12095 DUF3571: Protein of u 28.1 2E+02 0.0043 21.0 5.2 48 268-315 8-65 (83)
27 COG2168 DsrH Uncharacterized c 24.8 54 0.0012 24.6 1.8 29 266-295 22-50 (96)
28 PF07228 SpoIIE: Stage II spor 24.7 3.5E+02 0.0076 22.2 7.2 65 269-333 2-71 (193)
29 TIGR03859 PQQ_PqqD coenzyme PQ 23.8 1.7E+02 0.0037 21.0 4.3 41 270-313 16-56 (81)
30 PF10273 WGG: Pre-rRNA-process 23.4 1.7E+02 0.0037 21.1 4.2 46 94-140 19-64 (82)
31 PRK03982 heat shock protein Ht 22.5 1.1E+02 0.0024 27.9 3.8 31 266-297 103-133 (288)
32 PF02152 FolB: Dihydroneopteri 22.1 3.2E+02 0.0069 20.6 5.9 53 277-329 41-95 (113)
33 PRK05457 heat shock protein Ht 21.9 1.2E+02 0.0026 27.7 3.9 39 259-298 105-143 (284)
34 cd00534 DHNA_DHNTPE Dihydroneo 21.5 3.5E+02 0.0075 20.7 6.0 42 275-316 42-85 (118)
35 TIGR00525 folB dihydroneopteri 20.9 3.8E+02 0.0083 20.4 6.6 56 275-330 41-98 (116)
36 PF01436 NHL: NHL repeat; Int 20.9 1.6E+02 0.0036 16.1 3.6 21 164-184 8-28 (28)
37 PRK02391 heat shock protein Ht 20.4 1.1E+02 0.0023 28.1 3.3 26 272-297 116-141 (296)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=2.2e-54 Score=402.78 Aligned_cols=258 Identities=35% Similarity=0.603 Sum_probs=222.3
Q ss_pred cceeeeeecccCCCCCCCceEEEeccCCCC----CCCCCceeEEEEEeCCCchHHHHHHHHHHHHHHHhcCCChhhhcHH
Q 019889 54 VEIEADAAEDKGSRHTMEDASVVLVDASSD----SPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRELLDVK 129 (334)
Q Consensus 54 ~~~~~~~~s~~G~R~~nED~~~~~~~~~~~----~~~~~~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~~~~~~~~~~ 129 (334)
+.+.++.+|++|.|+.|||++++..++... .+...+..||||||||||+.+|++|++.+++.+.+.. ....
T Consensus 63 ~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~-----~~~~ 137 (365)
T PLN03145 63 PVVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDE-----DFPR 137 (365)
T ss_pred CceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhh-----ccch
Confidence 346789999999999999999876543211 1122346899999999999999999999999887531 1123
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhc-CCCCCCCcEEEEEEeCCeEEEeeeCCceEEEEeeccCCCCCCCcccccceeEEEeC
Q 019889 130 AAKKAILDGFRKTDESLLQESVS-GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVT 208 (334)
Q Consensus 130 ~~~~~l~~a~~~~~~~l~~~~~~-~~~~~GtT~~~~~i~~~~l~vanvGDSR~~l~r~~~~~~~~~~~~~~~~~~~~~LT 208 (334)
.+.++|.++|..+|..+.+.... ....||||++++++.++++|||||||||+|+++.+ ++++||
T Consensus 138 ~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g---------------~~~~LT 202 (365)
T PLN03145 138 EIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRG---------------KAIEMS 202 (365)
T ss_pred hHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCC---------------eEEEec
Confidence 56788999999999998765432 33469999999999999999999999999999998 999999
Q ss_pred CCCCCCChhHHHHHHhcCCEEeeCCeecCcccCcccccCccccCC------CceecceeEEEEecCCCeEEEEecCCCcc
Q 019889 209 RVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF------GVVATPDIHSFEVTERDHFIILGCDGLWG 282 (334)
Q Consensus 209 ~DH~~~~~~E~~ri~~~g~~v~~~~r~~g~~~~tRalGd~~~k~~------~v~~~P~i~~~~l~~~d~~llL~SDGl~d 282 (334)
+||++.++.|++||.+.||.+. +++++|.+.+||||||..+|.. +++++|++..+++.++|+|||||||||||
T Consensus 203 ~DH~~~~~~E~~RI~~~Gg~v~-~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwd 281 (365)
T PLN03145 203 RDHKPMCSKERKRIEASGGYVY-DGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWD 281 (365)
T ss_pred CCCCCCCHHHHHHHHHcCCcee-cceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCcccc
Confidence 9999999999999999999985 5789999999999999888643 37899999999999999899999999999
Q ss_pred ccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccEEEEEEecC
Q 019889 283 VFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 333 (334)
Q Consensus 283 ~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~A~~~~g~~DNiTvivv~~~~ 333 (334)
+|+++++++++...+....+++++|+.|++.|+ .+|+.||||||||+|+.
T Consensus 282 vls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al-~rgs~DNITvIVV~l~~ 331 (365)
T PLN03145 282 VFRSQNAVDFARRRLQEHNDPVMCSKELVDEAL-KRKSGDNLAVVVVCFQS 331 (365)
T ss_pred CcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hCCCCCCEEEEEEEeec
Confidence 999999999998887777789999999999997 69999999999999974
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-54 Score=368.34 Aligned_cols=262 Identities=32% Similarity=0.532 Sum_probs=232.5
Q ss_pred cccceeeeeecccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEeCCCchHHHHHHHHHHHHHHHhcCCChh---hhcH
Q 019889 52 DFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRE---LLDV 128 (334)
Q Consensus 52 ~~~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~~~~~---~~~~ 128 (334)
.-..+.||.+|+||||-.|||++.+...++. +-.+|.||+|||||.|+..+.+|+++|.+.+++....+. ..+.
T Consensus 18 ~GNglryg~SSMQGWR~eMEDah~A~~~l~~---~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv 94 (379)
T KOG0697|consen 18 EGNGLRYGVSSMQGWRVEMEDAHTAVAGLPS---PLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSV 94 (379)
T ss_pred cCCceeeeeccccchhhhhhhhhhhhhcCCC---CccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcH
Confidence 3457899999999999999999998766543 456899999999999999999999999999976422111 2345
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhh--cCCCCCCCcEEEEEEeCCeEEEeeeCCceEEEEeeccCCCCCCCcccccceeEEE
Q 019889 129 KAAKKAILDGFRKTDESLLQESV--SGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIV 206 (334)
Q Consensus 129 ~~~~~~l~~a~~~~~~~l~~~~~--~~~~~~GtT~~~~~i~~~~l~vanvGDSR~~l~r~~~~~~~~~~~~~~~~~~~~~ 206 (334)
+++++-|+.+|.++|+.+...+. .+..++||||+++++...++|++|+||||++++|++ .+..
T Consensus 95 ~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng---------------~~~f 159 (379)
T KOG0697|consen 95 ENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNG---------------EVVF 159 (379)
T ss_pred HHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCC---------------ceEE
Confidence 68899999999999998876653 333469999999999999999999999999999999 9999
Q ss_pred eCCCCCCCChhHHHHHHhcCCEEeeCCeecCcccCcccccCccccCC--------CceecceeEEEEecCCCeEEEEecC
Q 019889 207 VTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGCD 278 (334)
Q Consensus 207 LT~DH~~~~~~E~~ri~~~g~~v~~~~r~~g~~~~tRalGd~~~k~~--------~v~~~P~i~~~~l~~~d~~llL~SD 278 (334)
-|.||+|.+|.|+.||+.+||.|.- .|++|.|++||||||++||.. -|+++|+|....-...|+|+|||||
T Consensus 160 ~TqDHKP~~p~EkeRIqnAGGSVMI-qRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACD 238 (379)
T KOG0697|consen 160 STQDHKPYLPKEKERIQNAGGSVMI-QRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACD 238 (379)
T ss_pred eccCCCCCChHHHHHHhcCCCeEEE-EEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEcc
Confidence 9999999999999999999999864 499999999999999999964 2899999999999888889999999
Q ss_pred CCccccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccEEEEEEecC
Q 019889 279 GLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 333 (334)
Q Consensus 279 Gl~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~A~~~~g~~DNiTvivv~~~~ 333 (334)
|+||+++++|++++++..+.-..++..+|..+++.++ -+|+.||+|+|+|.|+.
T Consensus 239 GIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCL-hKGSRDNMsivlvcfp~ 292 (379)
T KOG0697|consen 239 GIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCL-HKGSRDNMSIVLVCFPG 292 (379)
T ss_pred chhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHH-hccCccCceEEEEecCC
Confidence 9999999999999999998878899999999999998 69999999999999864
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-50 Score=372.01 Aligned_cols=259 Identities=36% Similarity=0.540 Sum_probs=222.4
Q ss_pred eeeecccCCCCCCCceEEEeccCCCCCCCCC-ceeEEEEEeCCCchHHHHHHHHHHHHHHHhcCCChhhhcHHHHHHHHH
Q 019889 58 ADAAEDKGSRHTMEDASVVLVDASSDSPPNL-RCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRELLDVKAAKKAIL 136 (334)
Q Consensus 58 ~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~-~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~~~~~~~~~~~~~~~l~ 136 (334)
.+.++.+|+|+.|||++....+......... ...||||||||||+.+|+|+.++|+..+.+....... ......+++
T Consensus 42 ~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~--~~~~~~a~~ 119 (330)
T KOG0698|consen 42 GSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKD--RQDVKDALR 119 (330)
T ss_pred eEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccc--hHHHHHHHH
Confidence 4556888999999999998776543222233 6899999999999999999999999999875322211 145789999
Q ss_pred HHHH-hhhHHHHHhhhcCCCCCCCcEEEEEEeCC-eEEEeeeCCceEEEEeeccCCCCCCCcccccceeEEEeCCCCCCC
Q 019889 137 DGFR-KTDESLLQESVSGGWQDGATAVCIWILGR-TVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAI 214 (334)
Q Consensus 137 ~a~~-~~~~~l~~~~~~~~~~~GtT~~~~~i~~~-~l~vanvGDSR~~l~r~~~~~~~~~~~~~~~~~~~~~LT~DH~~~ 214 (334)
++|. ++|..+... ......+|||++++++..+ ++||||+|||||+|++.+. .+++||.||+|.
T Consensus 120 ~~F~~~~D~~~~~~-~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~--------------~a~~Ls~DHkP~ 184 (330)
T KOG0698|consen 120 RAFLTKTDSEFLEK-REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGG--------------VAVQLSVDHKPD 184 (330)
T ss_pred HHHHHHHHHHHHhh-ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCC--------------eeeeCCCCCCCC
Confidence 9999 699999876 2224578999998888865 9999999999999998651 799999999999
Q ss_pred ChhHHHHHHhcCCEEeeC---CeecCcccCcccccCccccCCCceecceeEEEEecCCCeEEEEecCCCccccChHHHHH
Q 019889 215 YPQERARIQKSGGTVSSN---GRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVE 291 (334)
Q Consensus 215 ~~~E~~ri~~~g~~v~~~---~r~~g~~~~tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~llL~SDGl~d~l~~~ei~~ 291 (334)
.+.|+.||.++||.|... .|+.|.|++||+|||..+|.++|+++|++....+.+.|+||||+||||||+++++|+++
T Consensus 185 ~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~ 264 (330)
T KOG0698|consen 185 REDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVD 264 (330)
T ss_pred cHHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHH
Confidence 999999999999999864 39999999999999999998889999999999999989999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccEEEEEEecCC
Q 019889 292 FVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRHK 334 (334)
Q Consensus 292 ~~~~~~~~~~~~~~~a~~l~~~A~~~~g~~DNiTvivv~~~~~ 334 (334)
+++..+.....+..++..|...|+ .+++.||||||||.|.+.
T Consensus 265 ~V~~~~~~~~~~~~a~~~l~~~a~-~~~s~DnitvvvV~l~~~ 306 (330)
T KOG0698|consen 265 LVRDELASISSPLAAAKLLATEAL-SRGSKDNITVVVVRLKSS 306 (330)
T ss_pred HHHHHhhccccHHHHHHHHHHHHh-hcCCCCCeEEEEEEecCc
Confidence 999976555678899999999996 799999999999999763
No 4
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=1.2e-49 Score=372.23 Aligned_cols=245 Identities=31% Similarity=0.523 Sum_probs=209.8
Q ss_pred cccceeeeeecccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEeCCCchHHHHHHHHHHHHHHHhcCCChhhhcHHHH
Q 019889 52 DFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRELLDVKAA 131 (334)
Q Consensus 52 ~~~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~~~~~~~~~~~~ 131 (334)
....|.++..+++|+|+.|||++++... .++.||||||||||..+|+++++.+...+...... ..
T Consensus 18 ~~~~~~~g~~s~~G~R~~nED~~~v~~~--------~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~-------~~ 82 (381)
T PTZ00224 18 GNSIFRCASACVNGYRESMEDAHLLYLT--------DDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEP-------MT 82 (381)
T ss_pred CCccEEEEEEeCCCCCCCCCCeeEeccC--------CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcccc-------cc
Confidence 4567889999999999999999886421 24469999999999999999999998776543111 11
Q ss_pred HHHHHHHHHhhhHHHHHhhhcCCCCCCCcEEEEEEe-CCeEEEeeeCCceEEEEeeccCCCCCCCcccccceeEEEeCCC
Q 019889 132 KKAILDGFRKTDESLLQESVSGGWQDGATAVCIWIL-GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRV 210 (334)
Q Consensus 132 ~~~l~~a~~~~~~~l~~~~~~~~~~~GtT~~~~~i~-~~~l~vanvGDSR~~l~r~~~~~~~~~~~~~~~~~~~~~LT~D 210 (334)
.+.|+++|..+|+.+.+... .+|||++++++. +.+++||||||||+|++|.+ ++++||+|
T Consensus 83 ~~~l~~a~~~~d~~i~~~~~----~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g---------------~~~~LT~D 143 (381)
T PTZ00224 83 DERMEELCLEIDEEWMDSGR----EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDG---------------KLVFATED 143 (381)
T ss_pred HHHHHHHHHHHHHHHHhccc----CCCCeEEEEEEEECCEEEEEEcccceEEEEECC---------------EEEEcccC
Confidence 24588899999999875432 469999988876 57999999999999999998 99999999
Q ss_pred CCCCChhHHHHHHhcCCEEeeCCeecCcccCcccccCccccCCC--------ceecceeEEEEecCCCeEEEEecCCCcc
Q 019889 211 HKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFG--------VVATPDIHSFEVTERDHFIILGCDGLWG 282 (334)
Q Consensus 211 H~~~~~~E~~ri~~~g~~v~~~~r~~g~~~~tRalGd~~~k~~~--------v~~~P~i~~~~l~~~d~~llL~SDGl~d 282 (334)
|++.++.|+.||...++.+. .+|+.|.+++||+|||..+|..+ |+++|++..+++.++| +||||||||||
T Consensus 144 H~~~~~~E~~RI~~~gg~v~-~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~D-~llLaSDGL~d 221 (381)
T PTZ00224 144 HKPNNPGERQRIEACGGRVV-SNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSND-FIILACDGVFE 221 (381)
T ss_pred CCCCCHHHHhHHHHccCEec-cccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCCC-EEEEECCCcCc
Confidence 99999999999999999986 46899999999999998876543 6789999999999887 99999999999
Q ss_pred -ccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccEEEEEEecC
Q 019889 283 -VFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 333 (334)
Q Consensus 283 -~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~A~~~~g~~DNiTvivv~~~~ 333 (334)
+++++|+.+++...+....+++.+|+.|++.|+ .+|+.||||||||+|..
T Consensus 222 ~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~-~rGs~DNITvIvV~~~~ 272 (381)
T PTZ00224 222 GNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAI-RRGSKDNISCLIVQLKD 272 (381)
T ss_pred CccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hcCCCCCEEEEEEEeeC
Confidence 899999999998766556689999999999997 79999999999999864
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=4e-51 Score=367.75 Aligned_cols=248 Identities=39% Similarity=0.616 Sum_probs=207.2
Q ss_pred eeeeecccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEeCCCchHHHHHHHHHHHHHHHhcCCChhhhcHHHHHHHHH
Q 019889 57 EADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRELLDVKAAKKAIL 136 (334)
Q Consensus 57 ~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~~~~~~~~~~~~~~~l~ 136 (334)
.++..+.+|+|..|||++++..+.... ....+..+|+|||||||+.+++++++.+...+.+.. .......+.++|.
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~-~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~---~~~~~~~~~~al~ 76 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSN-SGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENL---SFNDGNDIEEALR 76 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCC-TTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHH---HHHTCHHHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCcccc-CCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhc---ccccccchhhccc
Confidence 367889999999999999997654322 345678999999999999999999999997765531 1111126789999
Q ss_pred HHHHh-hhHHHHHhhhc-CCCCCCCcEEEEEEeCCeEEEeeeCCceEEEEeeccCCCCCCCcccccceeEE-EeCCCCCC
Q 019889 137 DGFRK-TDESLLQESVS-GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAI-VVTRVHKA 213 (334)
Q Consensus 137 ~a~~~-~~~~l~~~~~~-~~~~~GtT~~~~~i~~~~l~vanvGDSR~~l~r~~~~~~~~~~~~~~~~~~~~-~LT~DH~~ 213 (334)
.+|.+ ++..+...... ....+|||++++++.++++|+|||||||+|+++.+ ... +||+||+|
T Consensus 77 ~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~---------------~~~~~Lt~dH~~ 141 (254)
T PF00481_consen 77 QAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNG---------------GIIKQLTRDHKP 141 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETT---------------EEEEESS---ST
T ss_pred ceeeecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeecc---------------cccccccccccc
Confidence 99999 88888763322 45679999999999999999999999999999998 666 99999999
Q ss_pred CChhHHHHHHhcCCEEeeCCeecCcccCcccccCccccC---CCceecceeEEEEecCCCeEEEEecCCCccccChHHHH
Q 019889 214 IYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKK---FGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAV 290 (334)
Q Consensus 214 ~~~~E~~ri~~~g~~v~~~~r~~g~~~~tRalGd~~~k~---~~v~~~P~i~~~~l~~~d~~llL~SDGl~d~l~~~ei~ 290 (334)
.++.|+.||++.||.+...+|+.|.+++||+|||..+|+ ++|+++|+|..+++.++|+|||||||||||+|+++|++
T Consensus 142 ~~~~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~ 221 (254)
T PF00481_consen 142 SNPDERERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIV 221 (254)
T ss_dssp TSHHHHHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHH
T ss_pred chhhccceeeccccccccchhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHH
Confidence 999999999999999998889999999999999999998 78999999999999999889999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCcc
Q 019889 291 EFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNC 324 (334)
Q Consensus 291 ~~~~~~~~~~~~~~~~a~~l~~~A~~~~g~~DNi 324 (334)
+++.+....+..|+.+|+.|++.|+ ++|+.|||
T Consensus 222 ~~v~~~~~~~~~~~~~a~~L~~~A~-~~gs~DNi 254 (254)
T PF00481_consen 222 DIVRESLNSGRSPQEAAEKLVDEAI-ARGSKDNI 254 (254)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHH-HTTHHSHE
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHH-hcCCCCCC
Confidence 9999988765679999999999997 79999997
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-48 Score=349.57 Aligned_cols=246 Identities=25% Similarity=0.375 Sum_probs=210.0
Q ss_pred cccceeeeeecccC-CCCCCCceEEEeccCCCCCCCCCceeEEEEEeCCCchHHHHHHHHHHHHHHHhcCCChhhhcHHH
Q 019889 52 DFVEIEADAAEDKG-SRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRELLDVKA 130 (334)
Q Consensus 52 ~~~~~~~~~~s~~G-~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~~~~~~~~~~~ 130 (334)
..+.+.++..++.| .|..|||++++..+. .... ..||+||||||||.+|++||+.+++.|.+.+..........
T Consensus 4 ~~~~~~~~~~s~~g~~R~~NeD~~~~~~~~----~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~ 78 (262)
T COG0631 4 GILSLKVAGLSDVGTVRKHNEDAFLIKPNE----NGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNE 78 (262)
T ss_pred ccceeeeeeeccCCCccCCCCcceeecccc----CCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccch
Confidence 34667788899999 889999999986421 2223 57999999999999999999999999877533221211111
Q ss_pred -HHHHHHHHHHhhhHHHHHhhh--cCCCCCCCcEEEEEEeCCeEEEeeeCCceEEEEeeccCCCCCCCcccccceeEEEe
Q 019889 131 -AKKAILDGFRKTDESLLQESV--SGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVV 207 (334)
Q Consensus 131 -~~~~l~~a~~~~~~~l~~~~~--~~~~~~GtT~~~~~i~~~~l~vanvGDSR~~l~r~~~~~~~~~~~~~~~~~~~~~L 207 (334)
+.++|.+++..+|..+..... .....||||++++++.++++|+|||||||+|++|++ .+++|
T Consensus 79 ~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~---------------~~~~l 143 (262)
T COG0631 79 SLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDG---------------ELKQL 143 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCC---------------ceEEe
Confidence 689999999999999988764 344589999999999999999999999999999999 99999
Q ss_pred CCCCCCCChhHHHHHHhcCCEEeeCCeecCcccCcccccCccccCCCceecceeEEEEecCCCeEEEEecCCCccccChH
Q 019889 208 TRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPS 287 (334)
Q Consensus 208 T~DH~~~~~~E~~ri~~~g~~v~~~~r~~g~~~~tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~llL~SDGl~d~l~~~ 287 (334)
|.||++.+..++.|+...++... ++..+++|||||+.. .++|++...++.+++ |||||||||||.++++
T Consensus 144 T~DH~~~~~~~~~~~~~~~~~~~----~~~~~~ltralG~~~------~~~p~~~~~~~~~~d-~llL~SDGl~d~v~~~ 212 (262)
T COG0631 144 TEDHSLVNRLEQRGIITPEEARS----HPRRNALTRALGDFD------LLEPDITELELEPGD-FLLLCSDGLWDVVSDD 212 (262)
T ss_pred ccCCcHHHHHHHhcCCCHHHHHh----CccchhhhhhcCCCc------ccceeEEEEEcCCCC-EEEEECCCCccCcCHH
Confidence 99999999999999877776664 366669999999998 489999999999996 9999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccEEEEEEecC
Q 019889 288 DAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 333 (334)
Q Consensus 288 ei~~~~~~~~~~~~~~~~~a~~l~~~A~~~~g~~DNiTvivv~~~~ 333 (334)
++.+++.. ..++++++++|++.|. .+|+.||+|+|+|++..
T Consensus 213 ~i~~il~~----~~~~~~~~~~li~~a~-~~g~~DNiT~ilv~~~~ 253 (262)
T COG0631 213 EIVDILKN----SETPQEAADKLIELAL-EGGGPDNITVVLVRLNG 253 (262)
T ss_pred HHHHHHhc----CCCHHHHHHHHHHHHH-hcCCCCceEEEEEEeec
Confidence 99999987 5689999999999997 69999999999999764
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-46 Score=329.46 Aligned_cols=163 Identities=36% Similarity=0.632 Sum_probs=153.1
Q ss_pred CCCcEEEEEEeCCeEEEeeeCCceEEEEeeccCCCCCCCcccccceeEEEeCCCCCCCChhHHHHHHhcCCEEeeCCeec
Q 019889 157 DGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQ 236 (334)
Q Consensus 157 ~GtT~~~~~i~~~~l~vanvGDSR~~l~r~~~~~~~~~~~~~~~~~~~~~LT~DH~~~~~~E~~ri~~~g~~v~~~~r~~ 236 (334)
+|||+++|++.+.+|||||.||||++++|.| +++-+|.||+|....|..||..+||.|..+||++
T Consensus 330 SGtTAvVcLv~g~~liVANAGDSRcV~sr~G---------------kAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVN 394 (542)
T KOG0699|consen 330 SGTTAVVCLVGGDKLIVANAGDSRCVLSRNG---------------KAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVN 394 (542)
T ss_pred CCceEEEEEecCceEEEecCCCcceEEecCC---------------ceeecccCCCcccHHHHHHHHhcCCeEeecceec
Confidence 5999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CcccCcccccCccccCC--------CceecceeEEEEecCCCeEEEEecCCCccccChHHHHHHHHHHHHcCCCHHHHHH
Q 019889 237 GRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSR 308 (334)
Q Consensus 237 g~~~~tRalGd~~~k~~--------~v~~~P~i~~~~l~~~d~~llL~SDGl~d~l~~~ei~~~~~~~~~~~~~~~~~a~ 308 (334)
|.|.++|||||..||.. -+++-|+|....|.+.|+|+||+|||||++|+.++++++|+..+..+..+..+|+
T Consensus 395 GGLNLSRA~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~ice 474 (542)
T KOG0699|consen 395 GGLNLSRAFGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICE 474 (542)
T ss_pred CccchhhhhhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999853 2789999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHhC-----CCCCccEEEEEEecCC
Q 019889 309 RLVREAVLER-----RCKDNCTAIVIIFRHK 334 (334)
Q Consensus 309 ~l~~~A~~~~-----g~~DNiTvivv~~~~~ 334 (334)
.|++.++... -+.||+|||++.|++|
T Consensus 475 eL~D~CLAp~T~GDGTGCDNMT~ii~~Fkrk 505 (542)
T KOG0699|consen 475 ELCDACLAPSTDGDGTGCDNMTVIITTFKRK 505 (542)
T ss_pred HHHHhhcCCCCCCCCcCCCcceEEEEEeccc
Confidence 9999997421 2579999999999865
No 8
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-43 Score=320.26 Aligned_cols=232 Identities=29% Similarity=0.383 Sum_probs=189.9
Q ss_pred CCceEEEeccCCCCCCCCCceeEEEEEeCCCchHHHHHHHHHHHHHHHhcCCC----------hhh--------------
Q 019889 70 MEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLP----------REL-------------- 125 (334)
Q Consensus 70 nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~~~----------~~~-------------- 125 (334)
-||++.+... ...++.|+||||||||.+++++++++|..++..+..+ .+.
T Consensus 85 ~edrv~~~~s------~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~ 158 (390)
T KOG0700|consen 85 EEDRVSVAVS------EENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQ 158 (390)
T ss_pred ccCcceeeee------ccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhc
Confidence 4666655432 3557899999999999999999999999988733211 110
Q ss_pred -----hcHHHHHHHHHHHHHhhhHHHHHhhhcC------CCCCCCcEEEEEEeCCeEEEeeeCCceEEEEeeccCCCCCC
Q 019889 126 -----LDVKAAKKAILDGFRKTDESLLQESVSG------GWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNN 194 (334)
Q Consensus 126 -----~~~~~~~~~l~~a~~~~~~~l~~~~~~~------~~~~GtT~~~~~i~~~~l~vanvGDSR~~l~r~~~~~~~~~ 194 (334)
.....+.++|.+||.++++.+....... -..+|||+++.++.+..|||||+|||||+|++..
T Consensus 159 ~~~~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~------- 231 (390)
T KOG0700|consen 159 LSSADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVE------- 231 (390)
T ss_pred ccccCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceec-------
Confidence 1035688999999999999997554211 1258999999999999999999999999998876
Q ss_pred CcccccceeEEEeCCCCCCCChhHHHHHHhcCC-----EEeeCCeecCcccCcccccCccccC-----------------
Q 019889 195 HLDELSSLKAIVVTRVHKAIYPQERARIQKSGG-----TVSSNGRLQGRLEVSRAFGDRQFKK----------------- 252 (334)
Q Consensus 195 ~~~~~~~~~~~~LT~DH~~~~~~E~~ri~~~g~-----~v~~~~r~~g~~~~tRalGd~~~k~----------------- 252 (334)
.+...|.++|||.||+..+++|+.||+.+|. .+...+|+.|.+.+||||||..||+
T Consensus 232 --~~~~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~ 309 (390)
T KOG0700|consen 232 --NNGSWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYI 309 (390)
T ss_pred --CCCCeEEEEecChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCC
Confidence 1223379999999999999999999999984 2333459999999999999999985
Q ss_pred ---CCceecceeEEEEecCCCeEEEEecCCCccccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 019889 253 ---FGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVL 316 (334)
Q Consensus 253 ---~~v~~~P~i~~~~l~~~d~~llL~SDGl~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~A~~ 316 (334)
|+++++|+|+..+|.++|+||||+||||||+|+++|++++|..++....+-+.+|+.|++.|+.
T Consensus 310 ~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~ 376 (390)
T KOG0700|consen 310 GTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALG 376 (390)
T ss_pred CCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHh
Confidence 4799999999999999999999999999999999999999999876434456788888888874
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=2.5e-41 Score=303.06 Aligned_cols=250 Identities=37% Similarity=0.606 Sum_probs=211.4
Q ss_pred eeeeecccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEeCCCchHHHHHHHHHHHHHHHhcCCChhhhcHHHHHHHHH
Q 019889 57 EADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRELLDVKAAKKAIL 136 (334)
Q Consensus 57 ~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~~~~~~~~~~~~~~~l~ 136 (334)
.++..+..|.|..|||++++.... ...++.+|+|||||||+..|++|++.+++.+..............+...|.
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~-----~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~ 76 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNL-----NNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALR 76 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccC-----CCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 356678888999999999985431 103568999999999999999999999999876533221122456778999
Q ss_pred HHHHhhhHHHHHhhhc--CCCCCCCcEEEEEEeCCeEEEeeeCCceEEEEeeccCCCCCCCcccccceeEEEeCCCCCCC
Q 019889 137 DGFRKTDESLLQESVS--GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAI 214 (334)
Q Consensus 137 ~a~~~~~~~l~~~~~~--~~~~~GtT~~~~~i~~~~l~vanvGDSR~~l~r~~~~~~~~~~~~~~~~~~~~~LT~DH~~~ 214 (334)
.+|..+++.+...... ....+|||++++++..+.++++|+||||+|+++++ +++++|.||++.
T Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~---------------~~~~lt~dh~~~ 141 (254)
T cd00143 77 KAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNG---------------EAVQLTKDHKPV 141 (254)
T ss_pred HHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCC---------------ceeEcCCCCCCc
Confidence 9999999999877542 34578999999999999999999999999999998 999999999999
Q ss_pred ChhHHHHHHhcCCEEeeCCeecCcccCcccccCccccCCCceecceeEEEEe-cCCCeEEEEecCCCccccChHHHHHHH
Q 019889 215 YPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEV-TERDHFIILGCDGLWGVFGPSDAVEFV 293 (334)
Q Consensus 215 ~~~E~~ri~~~g~~v~~~~r~~g~~~~tRalGd~~~k~~~v~~~P~i~~~~l-~~~d~~llL~SDGl~d~l~~~ei~~~~ 293 (334)
++.+..|+...++.+. ..+.++.+.+||+||+..+|+ ++..+|++..+++ .++| +||||||||||++++++|.+++
T Consensus 142 ~~~~~~~i~~~~~~~~-~~~~~~~~~~t~~lG~~~~~~-~~~~~~~~~~~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~ 218 (254)
T cd00143 142 NEEERERIEKAGGRVS-NGRVPGVLAVTRALGDFDLKP-GVSAEPDVTVVKLTEDDD-FLILASDGLWDVLSNQEAVDIV 218 (254)
T ss_pred ChHHHHHHHHcCCcEE-eCEEcCceeeccccCCccccC-CEEcCCeEEEEEeCCCCc-EEEEECCCCeeccChHHHHHHH
Confidence 9999999999998765 457788999999999998874 4688999999999 7776 9999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCccEEEEEEe
Q 019889 294 QKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIF 331 (334)
Q Consensus 294 ~~~~~~~~~~~~~a~~l~~~A~~~~g~~DNiTvivv~~ 331 (334)
.....+ .+++++|+.|++.|. .+++.||+|+||+++
T Consensus 219 ~~~~~~-~~~~~~a~~l~~~a~-~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 219 RSELAK-EDLQEAAQELVDLAL-RRGSHDNITVVVVRL 254 (254)
T ss_pred HHHhcc-cCHHHHHHHHHHHHH-hCCCCCCEEEEEEeC
Confidence 884311 268999999999996 688999999999975
No 10
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=5.3e-42 Score=337.38 Aligned_cols=251 Identities=21% Similarity=0.233 Sum_probs=186.3
Q ss_pred cceeeeeecccC-CCCCCCceEEEeccCCCC-CCC---CCceeEEEEEeCCCchHHHHHHHHHHHHHHHhcCCChhhhcH
Q 019889 54 VEIEADAAEDKG-SRHTMEDASVVLVDASSD-SPP---NLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRELLDV 128 (334)
Q Consensus 54 ~~~~~~~~s~~G-~R~~nED~~~~~~~~~~~-~~~---~~~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~~~~~~~~~ 128 (334)
+.+.+++.|++| .|+.|||++.+..+.... .+. .....+|+|||||||+.+|++||+.+++.|.+.+.. .....
T Consensus 373 ~~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~-~~~~~ 451 (645)
T PRK14559 373 VSLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQ-HWQDE 451 (645)
T ss_pred eeEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHh-hhccc
Confidence 458889999999 599999998775432110 011 123578999999999999999999988887543211 10000
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhc----CCCCCCCcEEEEEEeCCeEEEeeeCCceEEEEe-eccCCCCCCCccccccee
Q 019889 129 KAAKKAILDGFRKTDESLLQESVS----GGWQDGATAVCIWILGRTVFVANIGDAKAVVAR-SSIVDGSNNHLDELSSLK 203 (334)
Q Consensus 129 ~~~~~~l~~a~~~~~~~l~~~~~~----~~~~~GtT~~~~~i~~~~l~vanvGDSR~~l~r-~~~~~~~~~~~~~~~~~~ 203 (334)
....+.|+++|..+|..|.+.... ....||||++++++.++++|++||||||+|+++ ++ +
T Consensus 452 ~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g---------------~ 516 (645)
T PRK14559 452 LPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKG---------------G 516 (645)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCC---------------e
Confidence 112467899999999999765422 334699999999999999999999999999985 56 8
Q ss_pred EEEeCCCCCCCChhHHHHHHhcCCEEee--CCeecCcccCcccccCccccCCCceecceeEEEEecCCCeEEEEecCCCc
Q 019889 204 AIVVTRVHKAIYPQERARIQKSGGTVSS--NGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLW 281 (334)
Q Consensus 204 ~~~LT~DH~~~~~~E~~ri~~~g~~v~~--~~r~~g~~~~tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~llL~SDGl~ 281 (334)
+++||+||++... +.+.| +.. ....++.+.+|||||+...+ ..+|++..+.+.++| +|||||||||
T Consensus 517 l~QLT~DHs~~~~-----lv~~G--i~~~~a~~~p~~~~LTrALG~~~~~----~l~Pdi~~~~L~~gD-~lLLCSDGL~ 584 (645)
T PRK14559 517 LEQLTVDHEVGQR-----EIQRG--VEPQIAYARPDAYQLTQALGPRDNS----AIQPDIQFLEIEEDT-LLLLCSDGLS 584 (645)
T ss_pred EEEeCCCCCHHHH-----HHHhC--CCHHHHhcCcccceeeeccCCCCCC----cccceEEEEEcCCCC-EEEEECCCCC
Confidence 9999999998532 33333 111 11346788999999987643 358999999998877 9999999999
Q ss_pred cc-cChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccEEEEEEecC
Q 019889 282 GV-FGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 333 (334)
Q Consensus 282 d~-l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~A~~~~g~~DNiTvivv~~~~ 333 (334)
|. +.+..+.+.+...+....++.++|++|++.|+ .+|+.||||||||+++.
T Consensus 585 D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al-~~gg~DNITvIvV~l~~ 636 (645)
T PRK14559 585 DNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLAN-QYNGHDNITAILVRLKV 636 (645)
T ss_pred CCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HcCCCCcEEEEEEEecc
Confidence 94 33333334444444456789999999999996 79999999999999864
No 11
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=9.6e-40 Score=293.36 Aligned_cols=248 Identities=38% Similarity=0.584 Sum_probs=208.8
Q ss_pred ceeeeeecccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEeCCCchHHHHHHHHHHHHHHHhcCCChhhhcHHHHHHH
Q 019889 55 EIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRELLDVKAAKKA 134 (334)
Q Consensus 55 ~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~~~~~~~~~~~~~~~ 134 (334)
.+.++..+.+|.|..|||++++.... ..+..+|+|||||||+.+|+++++.+.+.+...... .......+.+.
T Consensus 5 ~~~~~~~~~~~~r~~neD~~~~~~~~------~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 77 (255)
T smart00332 5 GLRYGLSSMQGVRKPMEDAHVITPDL------SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIK-HKDELEDVEEA 77 (255)
T ss_pred ceeEEEecCCCCCCCCcceEEEeccC------CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhh-cccchhHHHHH
Confidence 45566677888999999999886431 145689999999999999999999999887653211 11111357788
Q ss_pred HHHHHHhhhHHHHHhhhcC--CCCCCCcEEEEEEeCCeEEEeeeCCceEEEEeeccCCCCCCCcccccceeEEEeCCCCC
Q 019889 135 ILDGFRKTDESLLQESVSG--GWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHK 212 (334)
Q Consensus 135 l~~a~~~~~~~l~~~~~~~--~~~~GtT~~~~~i~~~~l~vanvGDSR~~l~r~~~~~~~~~~~~~~~~~~~~~LT~DH~ 212 (334)
|.+++.+++..+....... ...+|||++++++..++++++|+||||+|++|.+ ++.+||.||+
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~---------------~~~~lt~dh~ 142 (255)
T smart00332 78 LRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNG---------------KAVQLTEDHK 142 (255)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCC---------------ceeEcCCCCC
Confidence 9999999999998765432 2468999999999999999999999999999988 8999999999
Q ss_pred CCChhHHHHHHhcCCEEeeCCeecCcccCcccccCccccCCCceecceeEEEEe-cCCCeEEEEecCCCccccChHHHHH
Q 019889 213 AIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEV-TERDHFIILGCDGLWGVFGPSDAVE 291 (334)
Q Consensus 213 ~~~~~E~~ri~~~g~~v~~~~r~~g~~~~tRalGd~~~k~~~v~~~P~i~~~~l-~~~d~~llL~SDGl~d~l~~~ei~~ 291 (334)
+.++.|..||...++.+. .+++++.+.+||++|+..+|+. +.++|++...++ .++| +|||||||||++++++++.+
T Consensus 143 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~lt~~~g~~~~~~~-i~~~p~~~~~~~~~~~d-~ill~SDGv~~~l~~~~i~~ 219 (255)
T smart00332 143 PSNEDERARIEAAGGFVI-NGRVNGVLALSRAIGDFFLKPY-VSAEPDVTVVELTEKDD-FLILASDGLWDVLSNQEVVD 219 (255)
T ss_pred CcCHHHHHHHHHcCCEEE-CCeECCeEecccccCCHhhcCC-eEeeeEEEEEEecCCCc-EEEEECCccccCCCHHHHHH
Confidence 999999999999999886 4588889999999999887744 789999999996 6776 99999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccEEEEE
Q 019889 292 FVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVI 329 (334)
Q Consensus 292 ~~~~~~~~~~~~~~~a~~l~~~A~~~~g~~DNiTvivv 329 (334)
++...... .++.++|+.|++.|. .+++.||+|+|||
T Consensus 220 ~~~~~~~~-~~~~~~~~~l~~~a~-~~~~~Dn~T~ivv 255 (255)
T smart00332 220 IVRKHLSK-SDPEEAAKRLIDLAL-ARGSKDNITVIVV 255 (255)
T ss_pred HHHHHhhc-CCHHHHHHHHHHHHH-HcCCCCCeEEEEC
Confidence 99885432 258999999999996 6899999999985
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-31 Score=233.32 Aligned_cols=229 Identities=25% Similarity=0.407 Sum_probs=181.6
Q ss_pred CCceeEEEEEeCCCchHHHHHHHHHHHHHHHhcCC------------C-----------------------hhhhcHHHH
Q 019889 87 NLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGL------------P-----------------------RELLDVKAA 131 (334)
Q Consensus 87 ~~~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~~------------~-----------------------~~~~~~~~~ 131 (334)
..++.+|.+||||.|..++-.|++.+...+.+... + +......-+
T Consensus 141 ~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LV 220 (493)
T KOG1323|consen 141 RADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLV 220 (493)
T ss_pred CCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhh
Confidence 34689999999999999999999988876643210 0 011111246
Q ss_pred HHHHHHHHHhhhHHHHHhhhcCCCCCCCcEEEEEEeCCeEEEeeeCCceEEEEeeccCCCCCCCcccccceeEEEeCCCC
Q 019889 132 KKAILDGFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVH 211 (334)
Q Consensus 132 ~~~l~~a~~~~~~~l~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSR~~l~r~~~~~~~~~~~~~~~~~~~~~LT~DH 211 (334)
..+|+.||..+|+.|..+....+..+|||+++++..-+++|+||.||||++++|++ .+++||++.
T Consensus 221 iGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrnd---------------eirplS~ef 285 (493)
T KOG1323|consen 221 IGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRND---------------EIRPLSKEF 285 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecC---------------Ceeeccccc
Confidence 78999999999999998887777789999999999999999999999999999999 999999999
Q ss_pred CCCChhHHHHHHhcC--------CEEe-------------------------------------------e---CCeecC
Q 019889 212 KAIYPQERARIQKSG--------GTVS-------------------------------------------S---NGRLQG 237 (334)
Q Consensus 212 ~~~~~~E~~ri~~~g--------~~v~-------------------------------------------~---~~r~~g 237 (334)
+| +.|++||+..+ +... . ..|+.+
T Consensus 286 TP--etERqRlQ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~ 363 (493)
T KOG1323|consen 286 TP--ETERQRLQELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLA 363 (493)
T ss_pred Cc--HHHHHHHHHHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhh
Confidence 99 67899988764 1110 0 126678
Q ss_pred cccCcccccCccccC--------CCceecceeEEEEecC----CCeEEEEecCCCccccChHHHHHHHHHHHHcCC--CH
Q 019889 238 RLEVSRAFGDRQFKK--------FGVVATPDIHSFEVTE----RDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGL--SV 303 (334)
Q Consensus 238 ~~~~tRalGd~~~k~--------~~v~~~P~i~~~~l~~----~d~~llL~SDGl~d~l~~~ei~~~~~~~~~~~~--~~ 303 (334)
.+.+||.|||..+|- +-+++.|+|.++++.. .|+++||+||||||+++++|+..++...+.... +|
T Consensus 364 TigVsRGlGDH~Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp 443 (493)
T KOG1323|consen 364 TIGVSRGLGDHHLKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADP 443 (493)
T ss_pred hheeccccCcceeeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCCh
Confidence 899999999998773 2268899999988862 445999999999999999999999999885432 33
Q ss_pred ---HHHHHHHHHHHHH------------hCCCCCccEEEEEEec
Q 019889 304 ---TAVSRRLVREAVL------------ERRCKDNCTAIVIIFR 332 (334)
Q Consensus 304 ---~~~a~~l~~~A~~------------~~g~~DNiTvivv~~~ 332 (334)
..+|+.|+..|-- ..|+.|+|||.||.+.
T Consensus 444 ~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~ 487 (493)
T KOG1323|consen 444 SRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLK 487 (493)
T ss_pred hHHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEecc
Confidence 4677888877610 1257899999999875
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.91 E-value=3.7e-23 Score=182.69 Aligned_cols=207 Identities=18% Similarity=0.226 Sum_probs=145.1
Q ss_pred CCCceEEEeccCCCCCCCCCceeEEEEEeCCCchHHH----HHHHHHHHHHHHhcCCChhhhcHHHHHHHHHHHHHhhhH
Q 019889 69 TMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAA----EYAQKRLHANVISAGLPRELLDVKAAKKAILDGFRKTDE 144 (334)
Q Consensus 69 ~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~~----~~as~~l~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~ 144 (334)
.-||++++..+ ....+.|||||+|||.-= ..-|+.|+....+.. ......+..+...|..+|.++-.
T Consensus 90 ~GEDa~Fvss~--------~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v-~~~~~~~~~P~~lL~~ay~~l~~ 160 (330)
T KOG1379|consen 90 GGEDAWFVSSN--------PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLV-QNSDFNPSDPVNLLEKAYAELKS 160 (330)
T ss_pred CCCcceeeccC--------cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHh-cccccCCCChHHHHHHHHHHHhh
Confidence 46899998543 345789999999999752 233455555443321 11222223566778888766433
Q ss_pred HHHHhhhcCCCCCCCcEEEEEEe--CCeEEEeeeCCceEEEEeeccCCCCCCCcccccceeEEEeCCCCCCCChhHHHHH
Q 019889 145 SLLQESVSGGWQDGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARI 222 (334)
Q Consensus 145 ~l~~~~~~~~~~~GtT~~~~~i~--~~~l~vanvGDSR~~l~r~~~~~~~~~~~~~~~~~~~~~LT~DH~~~~~~E~~ri 222 (334)
. ....-++|||+++.+. +++||+||+|||-..++|+| ++++-|..+...-
T Consensus 161 ~------~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G---------------~vv~~S~~Q~H~F------- 212 (330)
T KOG1379|consen 161 Q------KVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREG---------------KVVFRSPEQQHYF------- 212 (330)
T ss_pred c------CCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECC---------------EEEEcCchheecc-------
Confidence 1 2223467899999888 78999999999999999999 9998888765321
Q ss_pred HhcCCEEeeCCeecCcccC-----cccccCccccCCCceecceeEEEEecCCCeEEEEecCCCccccChHHHHHHHHHHH
Q 019889 223 QKSGGTVSSNGRLQGRLEV-----SRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLL 297 (334)
Q Consensus 223 ~~~g~~v~~~~r~~g~~~~-----tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~llL~SDGl~d~l~~~ei~~~~~~~~ 297 (334)
..|.+|.+ ..+++|. .-..+.+.++++++| +||||||||||.|.+++|..++....
T Consensus 213 -----------N~PyQLs~~p~~~~~~~~d~-------p~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~ 273 (330)
T KOG1379|consen 213 -----------NTPYQLSSPPEGYSSYISDV-------PDSADVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLD 273 (330)
T ss_pred -----------CCceeeccCCccccccccCC-------ccccceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhh
Confidence 11111111 1112222 233567899999999 99999999999999999999999987
Q ss_pred H-cCCCHHHHHHHHHHHHHH----------------------hCCCCCccEEEEEEe
Q 019889 298 K-EGLSVTAVSRRLVREAVL----------------------ERRCKDNCTAIVIIF 331 (334)
Q Consensus 298 ~-~~~~~~~~a~~l~~~A~~----------------------~~g~~DNiTvivv~~ 331 (334)
. ....++..|++|++.|.. ..|..|+||+||..+
T Consensus 274 ~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 274 ARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred ccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 6 667899999999999832 124489999999753
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=3.6e-23 Score=204.29 Aligned_cols=247 Identities=23% Similarity=0.325 Sum_probs=204.9
Q ss_pred cccceeeeeecccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEeCCCchHHHHHHHHHHHHHHHhcCCChhhhcHHHH
Q 019889 52 DFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRELLDVKAA 131 (334)
Q Consensus 52 ~~~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~~~~~~~~~~~~ 131 (334)
..+...+|.+...|+|.++.-+.....++.. .+...||.+||-+......+....+.+++.+... .. .+-
T Consensus 518 n~~~~t~Gv~~~~gqrnk~c~~~~~v~nf~~-----~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~-~~----~~e 587 (1081)
T KOG0618|consen 518 NAFLWTYGVAGVSGQRNKVCSRAVWVENFFL-----NPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQ-LY----GNE 587 (1081)
T ss_pred ceeheeeccchhcccccchhhhhhhhhhccc-----CCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHH-hc----cCh
Confidence 4466779999999999999887766544311 2336799999999999999888888888876421 01 111
Q ss_pred HHHHHHHHHhhhHHHHHhhhcCCCCCCCcEEEEEEeC--------CeEEEeeeCCceEEEEeeccCCCCCCCccccccee
Q 019889 132 KKAILDGFRKTDESLLQESVSGGWQDGATAVCIWILG--------RTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLK 203 (334)
Q Consensus 132 ~~~l~~a~~~~~~~l~~~~~~~~~~~GtT~~~~~i~~--------~~l~vanvGDSR~~l~r~~~~~~~~~~~~~~~~~~ 203 (334)
.+.|..+|..+++++...+. ..|..++.+.+.. .++.+||+|+|.+++++++ +
T Consensus 588 t~~mr~~fl~~~rklg~~g~----~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng---------------~ 648 (1081)
T KOG0618|consen 588 TEQMRNTFLRLNRKLGEEGQ----VLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNG---------------K 648 (1081)
T ss_pred HHHHHHHHHHHhhhhhhhhc----cccchhhheeecccccCcccchhhhHhhhccchhhhhhcC---------------C
Confidence 23499999999999855433 3466666666653 3789999999999999999 7
Q ss_pred EEEeCCCC-CCCChhHHHHHHhcCCEEeeCCeecCcccCcccccCccccCCCceecceeEEEEecCCCeEEEEecCCCcc
Q 019889 204 AIVVTRVH-KAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWG 282 (334)
Q Consensus 204 ~~~LT~DH-~~~~~~E~~ri~~~g~~v~~~~r~~g~~~~tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~llL~SDGl~d 282 (334)
..++|+-. ....++|.+||...+|+|..++++.|....||++|.....+. |.+.|+|....+.+.|+|||+++-+||+
T Consensus 649 ~~p~t~~~~~~v~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P~-v~p~Phv~~~~Lt~qdE~LIvgn~~lW~ 727 (1081)
T KOG0618|consen 649 PLPTTRSPMLEVDREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLFPH-VLPDPHVSVVILTEQDEFLIVGNKQLWS 727 (1081)
T ss_pred cCcccccccccCCHHHHHHHHHhcCeecCCCeeeceeeeeeeccccccccc-ccCCCceeeEecccCceEEEEcchHHhh
Confidence 77777765 445899999999999999999999999999999999988775 8999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccEEEEEEecC
Q 019889 283 VFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 333 (334)
Q Consensus 283 ~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~A~~~~g~~DNiTvivv~~~~ 333 (334)
+|+-+++++.+++ ..+|-.+|++|++.|. +.|+.||++|+||++.+
T Consensus 728 ~Lsid~a~~~vRn----~~dpL~AAkKL~d~Aq-SYgc~~nv~vlVv~l~~ 773 (1081)
T KOG0618|consen 728 VLSIDTAVDAVRN----VEDPLLAAKKLCDLAQ-SYGCAENVSVLVVRLNH 773 (1081)
T ss_pred hccHHHHHHHHhc----CCchHHHHHHHHHHHH-hcccccCeeEEEEEeec
Confidence 9999999999996 6689999999999996 79999999999999864
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.88 E-value=4.6e-22 Score=173.94 Aligned_cols=184 Identities=21% Similarity=0.234 Sum_probs=101.3
Q ss_pred ecccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEeCCCchHHHHHHHHHHHHHHHhcC---CChhhhcHHHHHHHHHH
Q 019889 61 AEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAG---LPRELLDVKAAKKAILD 137 (334)
Q Consensus 61 ~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~---~~~~~~~~~~~~~~l~~ 137 (334)
.+++|.|..|||++.+... .+..+++||||+||...|+.+|+.+++.+.+.+ ....... .....++.
T Consensus 3 ~sh~~~~~~nqD~~~~~~~--------~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~--~~~~~~~~ 72 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD--------DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPS--SIEALIRA 72 (212)
T ss_dssp ----TTSSS--EEEEEE-T--------CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHH--HHHHHHHH
T ss_pred ccccCCCCCCCCCEEeeeC--------CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchH--HHHHHHHH
Confidence 5789999999999996532 234677999999999888888888877765432 1111111 02222232
Q ss_pred HHHhhhHHH-----HHhhhcCCCCCCCcEEEEEEeCCeEEEeeeCCceEEEE-eeccCCCCCCCcccccceeEEEeCCCC
Q 019889 138 GFRKTDESL-----LQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVA-RSSIVDGSNNHLDELSSLKAIVVTRVH 211 (334)
Q Consensus 138 a~~~~~~~l-----~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSR~~l~-r~~~~~~~~~~~~~~~~~~~~~LT~DH 211 (334)
+...+...+ ..........++||++++++.++.++++|+||||+|+. +++ .+..++.||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g---------------~~~~l~~~~ 137 (212)
T PF13672_consen 73 IKKEILSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNG---------------EIQQLTDDH 137 (212)
T ss_dssp HHHHHHHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETT---------------EEEE-S---
T ss_pred HHHHHHHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCC---------------EEEEcCCCc
Confidence 222222211 11112233467999999999999999999999999765 555 899999999
Q ss_pred CCCChhHHHHHHhcCCEEeeCCeecCcccCcccccCccccCCCceecceeEEEEecCCCeEEEEecCCCccccChHH-HH
Q 019889 212 KAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD-AV 290 (334)
Q Consensus 212 ~~~~~~E~~ri~~~g~~v~~~~r~~g~~~~tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~llL~SDGl~d~l~~~e-i~ 290 (334)
+. +..+ .++.+.... .....++..+++.+++ .|+|||||||+.+...+ +.
T Consensus 138 ~~----~~~~-------------------~~~~~~~~~-----~~~~~~~~~~~~~~~d-~ilL~SDG~~~~l~~~~~~~ 188 (212)
T PF13672_consen 138 SG----EYPN-------------------QTRSLTGDD-----PEPDVQYGSIPLEEGD-VILLCSDGVWDNLRSYEDLE 188 (212)
T ss_dssp BH----HHHH-------------------CTTSCCHHC-----CCTETEEEEEE--TT--EEEEE-HHHHTTS-HHHHHH
T ss_pred cc----hhhh-------------------hhhccCccc-----cccCCeEEEEEcCCCC-EEEEECcCccccCCCHHHHH
Confidence 63 2111 133333222 1223466667777887 99999999999998654 67
Q ss_pred HHHHHHHH
Q 019889 291 EFVQKLLK 298 (334)
Q Consensus 291 ~~~~~~~~ 298 (334)
.++.....
T Consensus 189 ~~l~~~~~ 196 (212)
T PF13672_consen 189 QFLKDLWN 196 (212)
T ss_dssp HH------
T ss_pred HHhhhccc
Confidence 77766543
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.81 E-value=2.6e-18 Score=148.00 Aligned_cols=175 Identities=19% Similarity=0.170 Sum_probs=128.8
Q ss_pred CCCCceEEEeccCCCCCCCCCceeEEEEEeCCCchHHHHHHHHHHHHHHHhcCCChhhhcHHHHHHHHHHHHHhhhHHHH
Q 019889 68 HTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRELLDVKAAKKAILDGFRKTDESLL 147 (334)
Q Consensus 68 ~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~ 147 (334)
...-|.+.+... ..+..+|+|+||||+...|.+++..+...+....... ..+.+.+..+|+.+.
T Consensus 15 ~~~GD~~~~~~~-------~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~---------~~~~~~l~~~n~~l~ 78 (193)
T smart00331 15 QVGGDFYDVVKL-------PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG---------ISLSQILERLNRAIY 78 (193)
T ss_pred hcCccEEEEEEe-------CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC---------CCHHHHHHHHHHHHH
Confidence 345677766432 2235789999999998889998888888776532110 134556667777775
Q ss_pred HhhhcCCCCCCCcEEEEEE--eCCeEEEeeeCCceEEEEe-eccCCCCCCCcccccceeEEEeCCCCCCCChhHHHHHHh
Q 019889 148 QESVSGGWQDGATAVCIWI--LGRTVFVANIGDAKAVVAR-SSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQK 224 (334)
Q Consensus 148 ~~~~~~~~~~GtT~~~~~i--~~~~l~vanvGDSR~~l~r-~~~~~~~~~~~~~~~~~~~~~LT~DH~~~~~~E~~ri~~ 224 (334)
.. ....+|+|++++++ ..++++++|+||+|+|+++ ++ ...+++.+
T Consensus 79 ~~---~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~---------------~~~~~~~~-------------- 126 (193)
T smart00331 79 EN---GEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADG---------------GLVEDLDD-------------- 126 (193)
T ss_pred hc---CCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCC---------------CeEEEcCC--------------
Confidence 54 23357999999998 5779999999999999999 44 44444443
Q ss_pred cCCEEeeCCeecCcccCcccccCccccCCCceecceeEEEEecCCCeEEEEecCCCccccChHHHHHHHHHHHHcCCCHH
Q 019889 225 SGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVT 304 (334)
Q Consensus 225 ~g~~v~~~~r~~g~~~~tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~llL~SDGl~d~l~~~ei~~~~~~~~~~~~~~~ 304 (334)
.++.+|... ..++++..+++.++| .|+|+||||||.++.+++.+++.+.. ..+++
T Consensus 127 ----------------~~~~lG~~~------~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~l~~~l~~~~--~~~~~ 181 (193)
T smart00331 127 ----------------LGAPLGLEP------DVEVDVRELTLEPGD-LLLLYTDGLTEARNPERLEELLEELL--GSPPA 181 (193)
T ss_pred ----------------CCceeeeCC------CCcceeEEEeeCCCC-EEEEECCCccccCChHHHHHHHHHhc--CCCHH
Confidence 234566544 344677888999998 99999999999999999999998854 34788
Q ss_pred HHHHHHHHHHH
Q 019889 305 AVSRRLVREAV 315 (334)
Q Consensus 305 ~~a~~l~~~A~ 315 (334)
++++++++.++
T Consensus 182 ~~~~~i~~~~~ 192 (193)
T smart00331 182 EIAQRILEELL 192 (193)
T ss_pred HHHHHHHHHHh
Confidence 99998888763
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.68 E-value=2.4e-15 Score=153.48 Aligned_cols=205 Identities=16% Similarity=0.077 Sum_probs=140.4
Q ss_pred ccceeeeee-cccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEeCCCchHHHHHHHHHHHHHHHhcCCChhhhcHHHH
Q 019889 53 FVEIEADAA-EDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRELLDVKAA 131 (334)
Q Consensus 53 ~~~~~~~~~-s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~~~~~~~~~~~~ 131 (334)
.+.+.+|.+ ..++.+..+.|.+.+... ..+..+++|+||+|....|..++..+.+.+.+. .. ...+
T Consensus 549 ~~~~~~g~a~~~k~g~~vsGD~y~~~~l-------~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~-~~-~g~~---- 615 (764)
T TIGR02865 549 KYHVSTGVARAAKDGELVSGDSYSFGKL-------SAGKYAVAISDGMGSGPEAAQESSACVRLLEKF-LE-SGFD---- 615 (764)
T ss_pred ceeehhhHHHhcCCCCcccCceEEEEEE-------CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHH-HH-cCCC----
Confidence 345555554 344567788999877532 223467899999997777767777766654321 11 1111
Q ss_pred HHHHHHHHHhhhHHHHHhhhcCCCCCCCcEEEEEEe--CCeEEEeeeCCceEEEEeeccCCCCCCCcccccceeEEEeCC
Q 019889 132 KKAILDGFRKTDESLLQESVSGGWQDGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTR 209 (334)
Q Consensus 132 ~~~l~~a~~~~~~~l~~~~~~~~~~~GtT~~~~~i~--~~~l~vanvGDSR~~l~r~~~~~~~~~~~~~~~~~~~~~LT~ 209 (334)
...++..+|..+... ....+.+|+.+++++ .+++.++|+|+++.|+.|++ .+.+++.
T Consensus 616 ---~~~ai~~lN~~L~~~---~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~---------------~v~~i~s 674 (764)
T TIGR02865 616 ---REVAIKTVNSILSLR---STDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGA---------------KVEVIRS 674 (764)
T ss_pred ---HHHHHHHHHHHHHhC---CCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECC---------------EEEEecC
Confidence 244566666666433 122468999999886 57899999999999999987 7877765
Q ss_pred CCCCCChhHHHHHHhcCCEEeeCCeecCcccCcccccCccccCCCceecceeEEEEecCCCeEEEEecCCCccccChHH-
Q 019889 210 VHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD- 288 (334)
Q Consensus 210 DH~~~~~~E~~ri~~~g~~v~~~~r~~g~~~~tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~llL~SDGl~d~l~~~e- 288 (334)
.+-| +|-.. ..+++....++.++| +|||+||||||..++.+
T Consensus 675 ~~lP-------------------------------lGil~------~~~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~ 716 (764)
T TIGR02865 675 SNLP-------------------------------IGILD------EVDVELVRKKLKNGD-LIVMVSDGVLEGEKEVEG 716 (764)
T ss_pred CCce-------------------------------eEecc------CCccceEEEEeCCCC-EEEEECCCCCcCCccccc
Confidence 4322 33222 335667788999998 99999999999887543
Q ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CCCccEEEEEEe
Q 019889 289 ----AVEFVQKLLKEGLSVTAVSRRLVREAVLERR--CKDNCTAIVIIF 331 (334)
Q Consensus 289 ----i~~~~~~~~~~~~~~~~~a~~l~~~A~~~~g--~~DNiTvivv~~ 331 (334)
+.+++... ...+|+++++.|++.|....+ ..||+|++++++
T Consensus 717 ~~~~l~~~l~~~--~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 717 KVLWLVRKLKET--NTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 44555432 245799999999999864333 489999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.57 E-value=6e-13 Score=114.36 Aligned_cols=180 Identities=18% Similarity=0.149 Sum_probs=111.7
Q ss_pred ceeEEEEEeCCCchHHHHHHHHHHHHHHHhcCCChhhhcHHHHHHHHHHHHHhhhHHHHHhhhcCCCCCCCcEEEEEEe-
Q 019889 89 RCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRELLDVKAAKKAILDGFRKTDESLLQESVSGGWQDGATAVCIWIL- 167 (334)
Q Consensus 89 ~~~l~~V~DGhGG~~~~~~as~~l~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~GtT~~~~~i~- 167 (334)
+..+++|+|++|..-.|.+.+..+...+.... ....+ ..+.+..+|+.+....... ...+|++++.++
T Consensus 3 ~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~--~~~~~-------p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~ 71 (193)
T PF07228_consen 3 GRYFIIVGDVSGHGVSAALLSAALASAIRELL--DEGLD-------PEELLEALNRRLYRDLKGD--NRYATACYAIIDP 71 (193)
T ss_dssp TEEEEEEEEESSSSHHHHHHHHHHHHHHHHHH--HTTTS-------HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEET
T ss_pred CEEEEEEEEecCCCHHHHHHHHHHHHHHHHHH--HcCCC-------HHHHHHHHHHHHHHHhhhc--cccceEEEEEecc
Confidence 44678999999944444444444444443211 01111 3445566666664443322 367888888876
Q ss_pred -CCeEEEeeeCCceEEEEeeccCCCCCCCcccccceeEEEeCCCCCCCChhHHHHHHhcCCEEeeCCeecCcccCccccc
Q 019889 168 -GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFG 246 (334)
Q Consensus 168 -~~~l~vanvGDSR~~l~r~~~~~~~~~~~~~~~~~~~~~LT~DH~~~~~~E~~ri~~~g~~v~~~~r~~g~~~~tRalG 246 (334)
.++++++|+|++++++++.+. + ....+.....| +|
T Consensus 72 ~~~~l~~~~aG~~~~l~~~~~~--~-----------~~~~~~~~~~~-------------------------------lG 107 (193)
T PF07228_consen 72 ETGTLTYANAGHPPPLLLRPGG--R-----------EIEQLESEGPP-------------------------------LG 107 (193)
T ss_dssp TTTEEEEEEESSSEEEEEETTC--T-----------EEEEETCSSBB-------------------------------CS
T ss_pred cceEEEEeCCCCCCEEEEeccc--c-----------ceeecccCccc-------------------------------ee
Confidence 458999999999999999841 0 34444332211 44
Q ss_pred CccccCCCceecceeEEEEecCCCeEEEEecCCCccccChHHH-------HHHHHHHHHcCCCHHHHHHHHHHHHHH--h
Q 019889 247 DRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDA-------VEFVQKLLKEGLSVTAVSRRLVREAVL--E 317 (334)
Q Consensus 247 d~~~k~~~v~~~P~i~~~~l~~~d~~llL~SDGl~d~l~~~ei-------~~~~~~~~~~~~~~~~~a~~l~~~A~~--~ 317 (334)
-.. ...+....+++.++| .|+|+||||+|....+.- .+++.+. ...+++++++.|++.+.. .
T Consensus 108 ~~~------~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~ 178 (193)
T PF07228_consen 108 IFE------DIDYQEQEIQLEPGD-RLLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEIIDALLEAIDRFGK 178 (193)
T ss_dssp SSC------TTCEEEEEEE--TTE-EEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHHHHHHHHHHHHHTT
T ss_pred eec------cccccceEEEecccc-EEEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHhcC
Confidence 322 233455678888888 999999999999854432 3444332 356799999999998853 2
Q ss_pred CCCCCccEEEEEEec
Q 019889 318 RRCKDNCTAIVIIFR 332 (334)
Q Consensus 318 ~g~~DNiTvivv~~~ 332 (334)
....||+|+++++++
T Consensus 179 ~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 179 GPLRDDITVLVIRRQ 193 (193)
T ss_dssp SSTSS-EEEEEEEE-
T ss_pred CCCCCceEEEEEEEC
Confidence 357899999999974
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.51 E-value=1.7e-05 Score=75.16 Aligned_cols=178 Identities=17% Similarity=0.137 Sum_probs=113.9
Q ss_pred ceeEEEEEeCCC-chHHHHHHHHHHHHHHHhcCCChhhhcHHHHHHHHHHHHHhhhHHHHHhhhcCCCCCCCcEEEEEEe
Q 019889 89 RCAHFAIFDGHG-GRLAAEYAQKRLHANVISAGLPRELLDVKAAKKAILDGFRKTDESLLQESVSGGWQDGATAVCIWIL 167 (334)
Q Consensus 89 ~~~l~~V~DGhG-G~~~~~~as~~l~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~GtT~~~~~i~ 167 (334)
....++|.|.+| |-.++-. +.... ...+........++. +.+..+|+.+...... .+=+|+..++++
T Consensus 174 ~~~~i~I~DvsG~Gv~aal~-m~~~~-~~~~~~~~~~~~~p~-------~~l~~~n~~~~~~~~~---~~f~T~~~~~~d 241 (367)
T COG2208 174 KRLRIGIGDVSGKGVPAALL-MLMPK-LALRLLLESGPLDPA-------DVLETLNRVLKQNLEE---DMFVTLFLGVYD 241 (367)
T ss_pred cEEEEEEEeccCCCHHHHHH-HHHHH-HHHHHhhhcccCCHH-------HHHHHHHHHHHhcccC---CcEEEEEEEEEe
Confidence 457789999999 6666544 22222 222211111122222 2344455554443222 156777777776
Q ss_pred --CCeEEEeeeCCceEEEEeeccCCCCCCCccccccee--EEEeCCCCCCCChhHHHHHHhcCCEEeeCCeecCcccCcc
Q 019889 168 --GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLK--AIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSR 243 (334)
Q Consensus 168 --~~~l~vanvGDSR~~l~r~~~~~~~~~~~~~~~~~~--~~~LT~DH~~~~~~E~~ri~~~g~~v~~~~r~~g~~~~tR 243 (334)
...+..+|+|---+++++.+. . ...++ ....
T Consensus 242 ~~~~~l~y~~aGH~p~~i~~~~~--------------~~~~~~l~-------------------------------~~g~ 276 (367)
T COG2208 242 LDSGELTYSNAGHEPALILSADG--------------EIEVEDLT-------------------------------ALGL 276 (367)
T ss_pred ccCCEEEEeeCCCCCeeEEEcCC--------------CceeEEcc-------------------------------CCCc
Confidence 468999999999999988761 1 11111 2555
Q ss_pred cccCccccCCCceecceeEEEEecCCCeEEEEecCCCcc-------ccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 019889 244 AFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWG-------VFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVL 316 (334)
Q Consensus 244 alGd~~~k~~~v~~~P~i~~~~l~~~d~~llL~SDGl~d-------~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~A~~ 316 (334)
++|... ...+.+...++.++| .++|.|||+.| .+..+....++.... ..+++++++.+.+....
T Consensus 277 piG~~~------~~~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~i~~~l~~ 347 (367)
T COG2208 277 PIGLLP------DYQYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGRLL--GQPAEEILEAILESLEE 347 (367)
T ss_pred eeeecC------CccchheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 667655 556677888898987 99999999998 567777777777532 45788999888887643
Q ss_pred hC---CCCCccEEEEEEec
Q 019889 317 ER---RCKDNCTAIVIIFR 332 (334)
Q Consensus 317 ~~---g~~DNiTvivv~~~ 332 (334)
-. .-.||+|++++++.
T Consensus 348 ~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 348 LQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred hhCCccccCceEEEEEEec
Confidence 22 24688999999985
No 20
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=68.33 E-value=13 Score=31.33 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=37.2
Q ss_pred CeEEEEecCCCc-----------cccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Q 019889 270 DHFIILGCDGLW-----------GVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERR 319 (334)
Q Consensus 270 d~~llL~SDGl~-----------d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~A~~~~g 319 (334)
|+.+|..|.|+| |+|.++...+.+.+--++-.-|.++|+.|++.-. ++|
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq-~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQ-RRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHH-hcC
Confidence 348888998888 7788888887777644444458999999999885 455
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=54.41 E-value=8.2 Score=27.32 Aligned_cols=21 Identities=10% Similarity=0.290 Sum_probs=15.1
Q ss_pred ecCCCeEEEEecCCCccccCh
Q 019889 266 VTERDHFIILGCDGLWGVFGP 286 (334)
Q Consensus 266 l~~~d~~llL~SDGl~d~l~~ 286 (334)
+...++.+|+++||+|=-+..
T Consensus 23 l~~~G~Rllva~nGv~lEv~r 43 (72)
T PF09436_consen 23 LERPGHRLLVASNGVFLEVRR 43 (72)
T ss_pred cccCCcEEEEecCcEEEEEec
Confidence 343445999999999965543
No 22
>PRK10693 response regulator of RpoS; Provisional
Probab=48.84 E-value=1.9e+02 Score=26.37 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=29.4
Q ss_pred HHHHHhhhHHHHHhhhcCCCCCCCcEEEEEEeC--CeEEEeeeCCceEEEE
Q 019889 136 LDGFRKTDESLLQESVSGGWQDGATAVCIWILG--RTVFVANIGDAKAVVA 184 (334)
Q Consensus 136 ~~a~~~~~~~l~~~~~~~~~~~GtT~~~~~i~~--~~l~vanvGDSR~~l~ 184 (334)
...+..+|..+....... --|+..++++. +++.+++.|-...++.
T Consensus 208 ~~~l~~lN~~l~~~~~~~----~~t~~~~~~d~~~~~l~~~~AGhp~~~~~ 254 (303)
T PRK10693 208 GALLKQVNHLLRQANLPG----QFPLLVGYYHRELKNLILVSAGLNATLNT 254 (303)
T ss_pred HHHHHHHHHHHHhcCCCc----eeeEEEEEEEcCCCeEEEEeCCCCCEEec
Confidence 334556666665542211 25777777764 5799999999998853
No 23
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=48.15 E-value=33 Score=23.20 Aligned_cols=26 Identities=8% Similarity=0.241 Sum_probs=22.9
Q ss_pred cChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 019889 284 FGPSDAVEFVQKLLKEGLSVTAVSRRLVR 312 (334)
Q Consensus 284 l~~~ei~~~~~~~~~~~~~~~~~a~~l~~ 312 (334)
-+++||...+... +.+|.+++++|+.
T Consensus 19 hse~eIya~L~ec---nMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKEC---NMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHh---CCCHHHHHHHHHh
Confidence 5889999999886 7899999999987
No 24
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=31.54 E-value=1.2e+02 Score=20.40 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=14.8
Q ss_pred EEEEecCCCccccChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 019889 272 FIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVR 312 (334)
Q Consensus 272 ~llL~SDGl~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~ 312 (334)
++||-.++-. ..-++....+.+.++.+.+..++++.|.+
T Consensus 3 ~vll~~~~~~--~~Ln~~a~~Iw~~~~g~~t~~ei~~~l~~ 41 (68)
T PF05402_consen 3 YVLLDPESGE--FTLNETAAFIWELLDGPRTVEEIVDALAE 41 (68)
T ss_dssp EEEE------------THHHHHHHH--SSS-HHHHHHHHHH
T ss_pred EEEEeCCCCC--ccccHHHHHHHHHccCCCCHHHHHHHHHH
Confidence 4444444433 24455555666666555566666666554
No 25
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=28.17 E-value=2.6e+02 Score=22.44 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=28.9
Q ss_pred eecceeEEEEecCCCeEEEEecCCCccccChHHHHHHHHHH
Q 019889 256 VATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKL 296 (334)
Q Consensus 256 ~~~P~i~~~~l~~~d~~llL~SDGl~d~l~~~ei~~~~~~~ 296 (334)
.+.|.+....++++.--++-...|+|..++.++...+....
T Consensus 75 LP~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 115 (157)
T PF14014_consen 75 LPPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKEA 115 (157)
T ss_pred CCCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHHH
Confidence 45677777777755534556788888888888777766654
No 26
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=28.14 E-value=2e+02 Score=20.99 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=30.2
Q ss_pred CCCeEEEEecCCCccccChHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHH
Q 019889 268 ERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEG----------LSVTAVSRRLVREAV 315 (334)
Q Consensus 268 ~~d~~llL~SDGl~d~l~~~ei~~~~~~~~~~~----------~~~~~~a~~l~~~A~ 315 (334)
..|.|+||-.+-==..++.+|+..-+..++... .+.++.|+.|++.+.
T Consensus 8 ~~d~yVvLEp~~~Eqflt~~Ell~~Lk~~L~~~~~LP~dL~~~~s~~~qa~~Lldt~C 65 (83)
T PF12095_consen 8 QEDHYVVLEPGQPEQFLTPEELLEKLKEWLQNQDDLPPDLAKFSSVEEQAQYLLDTAC 65 (83)
T ss_dssp ----EEEEESSS-SEEE-HHHHHHHHHHHHHHTTTS-HHHHH---HHHHHHHHHHH--
T ss_pred ccCCEEEecCCCCcccCCHHHHHHHHHHHHHcCCCCCHHHHhCCCHHHHHHHHHHhce
Confidence 345578877666555899999999999888643 346778888888874
No 27
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=24.83 E-value=54 Score=24.57 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=23.4
Q ss_pred ecCCCeEEEEecCCCccccChHHHHHHHHH
Q 019889 266 VTERDHFIILGCDGLWGVFGPSDAVEFVQK 295 (334)
Q Consensus 266 l~~~d~~llL~SDGl~d~l~~~ei~~~~~~ 295 (334)
+.++| -++|+.|||+-.+...+..+-+..
T Consensus 22 l~~~D-~vlL~qdGV~aAl~~~~~~~sl~~ 50 (96)
T COG2168 22 LTEGD-AVLLLQDGVYAALKGNRYLASLRE 50 (96)
T ss_pred hcccC-eEEEEcccchhhhcCcHHHHHHhc
Confidence 45777 899999999999988877766654
No 28
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=24.68 E-value=3.5e+02 Score=22.18 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=40.9
Q ss_pred CCeEEEEecCCCcc----ccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC-CccEEEEEEecC
Q 019889 269 RDHFIILGCDGLWG----VFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCK-DNCTAIVIIFRH 333 (334)
Q Consensus 269 ~d~~llL~SDGl~d----~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~A~~~~g~~-DNiTvivv~~~~ 333 (334)
++.++++..|+.=. .+-.-.+..++........+|.++.+.|-+......... --+|++++.++.
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~ 71 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLDPEELLEALNRRLYRDLKGDNRYATACYAIIDP 71 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEET
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhccccceEEEEEecc
Confidence 34577777775433 333444555666666677789999888877763333333 567887777654
No 29
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=23.85 E-value=1.7e+02 Score=20.97 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=26.8
Q ss_pred CeEEEEecCCCccccChHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 019889 270 DHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVRE 313 (334)
Q Consensus 270 d~~llL~SDGl~d~l~~~ei~~~~~~~~~~~~~~~~~a~~l~~~ 313 (334)
+.++|+...| ++.-+++...|.+.++...+..++++.|.+.
T Consensus 16 ~~~Vl~~p~~---~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~ 56 (81)
T TIGR03859 16 DCYVLLYPEG---MVKLNDSAGEILELCDGKRSLAEIIQELAQR 56 (81)
T ss_pred CcEEEEcCCc---eeeeChHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 3366666654 4566677777777777666777777776543
No 30
>PF10273 WGG: Pre-rRNA-processing protein TSR2; InterPro: IPR019398 The pre-rRNA-processing protein TSR2 is required for 20S pre-rRNA processing []. This family contains a distinctive WGG motif.
Probab=23.42 E-value=1.7e+02 Score=21.14 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=27.3
Q ss_pred EEEeCCCchHHHHHHHHHHHHHHHhcCCChhhhcHHHHHHHHHHHHH
Q 019889 94 AIFDGHGGRLAAEYAQKRLHANVISAGLPRELLDVKAAKKAILDGFR 140 (334)
Q Consensus 94 ~V~DGhGG~~~~~~as~~l~~~l~~~~~~~~~~~~~~~~~~l~~a~~ 140 (334)
||--|.||....+.+ +.+...+..-+.....++...+...|.+.+.
T Consensus 19 AVen~wGG~~s~~K~-~~l~~~i~~~f~~~~~~~~~~le~~L~~~m~ 64 (82)
T PF10273_consen 19 AVENGWGGPDSQEKA-DWLAEVIVDWFTENKDPDADDLEDFLEDIMD 64 (82)
T ss_pred HHHhccCCccHHHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 555678887776665 4444444444333444556777777777663
No 31
>PRK03982 heat shock protein HtpX; Provisional
Probab=22.53 E-value=1.1e+02 Score=27.87 Aligned_cols=31 Identities=6% Similarity=0.207 Sum_probs=25.0
Q ss_pred ecCCCeEEEEecCCCccccChHHHHHHHHHHH
Q 019889 266 VTERDHFIILGCDGLWGVFGPSDAVEFVQKLL 297 (334)
Q Consensus 266 l~~~d~~llL~SDGl~d~l~~~ei~~~~~~~~ 297 (334)
..+.+ ..|..|||+.+.++++|+..++...+
T Consensus 103 ~~~~~-~~V~vt~gLl~~l~~~El~AVlAHEl 133 (288)
T PRK03982 103 RDPKH-AVVAVTEGILNLLNEDELEGVIAHEL 133 (288)
T ss_pred cCCCC-eEEEeehHHHhhCCHHHHHHHHHHHH
Confidence 33444 56778999999999999999988765
No 32
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=22.07 E-value=3.2e+02 Score=20.60 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=40.4
Q ss_pred cCCCccccChHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCCCccEEEEE
Q 019889 277 CDGLWGVFGPSDAVEFVQKLLKEG--LSVTAVSRRLVREAVLERRCKDNCTAIVI 329 (334)
Q Consensus 277 SDGl~d~l~~~ei~~~~~~~~~~~--~~~~~~a~~l~~~A~~~~g~~DNiTvivv 329 (334)
+|-+-+.++...+.+.+....... ...+.+|+.+.+..+...+..+.+++-+-
T Consensus 41 ~D~l~~tvdY~~l~~~i~~~~~~~~f~llE~la~~i~~~i~~~~~~v~~v~v~v~ 95 (113)
T PF02152_consen 41 SDDLDDTVDYAELAEAIRELVENSHFNLLETLAERIADRILKEFPQVQSVTVKVR 95 (113)
T ss_dssp HTTGGGSSHHHHHHHHHHHHHHSSEESSHHHHHHHHHHHHHHHTTTESEEEEEEE
T ss_pred ccccccccCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhCCCccEEEEEEE
Confidence 588999999999999998887643 56889999999998755454555555443
No 33
>PRK05457 heat shock protein HtpX; Provisional
Probab=21.91 E-value=1.2e+02 Score=27.67 Aligned_cols=39 Identities=5% Similarity=0.108 Sum_probs=28.8
Q ss_pred ceeEEEEecCCCeEEEEecCCCccccChHHHHHHHHHHHH
Q 019889 259 PDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLK 298 (334)
Q Consensus 259 P~i~~~~l~~~d~~llL~SDGl~d~l~~~ei~~~~~~~~~ 298 (334)
|.-...-..+.. .+|+.|+|+.+.++++|+..++...+.
T Consensus 105 ~NAfa~G~~~~~-~~V~vt~gLl~~L~~~El~aVlAHElg 143 (284)
T PRK05457 105 INAFATGASKNN-SLVAVSTGLLQNMSRDEVEAVLAHEIS 143 (284)
T ss_pred ceEEEecCCCCC-eEEEeehHHhhhCCHHHHHHHHHHHHH
Confidence 333333333444 788999999999999999999887653
No 34
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=21.46 E-value=3.5e+02 Score=20.70 Aligned_cols=42 Identities=7% Similarity=0.166 Sum_probs=33.3
Q ss_pred EecCCCccccChHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHH
Q 019889 275 LGCDGLWGVFGPSDAVEFVQKLLKEG--LSVTAVSRRLVREAVL 316 (334)
Q Consensus 275 L~SDGl~d~l~~~ei~~~~~~~~~~~--~~~~~~a~~l~~~A~~ 316 (334)
-+||-|-+.++...+.+.+....... ...+.+|+.+.+..+.
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~ 85 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLE 85 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHH
Confidence 36899999999999999998877543 3577888888888763
No 35
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=20.94 E-value=3.8e+02 Score=20.39 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=38.7
Q ss_pred EecCCCccccChHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCCCccEEEEEE
Q 019889 275 LGCDGLWGVFGPSDAVEFVQKLLKEG--LSVTAVSRRLVREAVLERRCKDNCTAIVII 330 (334)
Q Consensus 275 L~SDGl~d~l~~~ei~~~~~~~~~~~--~~~~~~a~~l~~~A~~~~g~~DNiTvivv~ 330 (334)
-.+|.+-+.++..++.+.+....... ...+.+|+.+.+..+......+-+++-+-+
T Consensus 41 ~~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~~v~~v~v~i~K 98 (116)
T TIGR00525 41 AESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFPQVQRVKVRVSK 98 (116)
T ss_pred hccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCCCceEEEEEEEe
Confidence 35899999999999999998877643 356778888888776432334445544433
No 36
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=20.92 E-value=1.6e+02 Score=16.14 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=16.1
Q ss_pred EEEeCCeEEEeeeCCceEEEE
Q 019889 164 IWILGRTVFVANIGDAKAVVA 184 (334)
Q Consensus 164 ~~i~~~~l~vanvGDSR~~l~ 184 (334)
++-.++.+||+-.|..|+..+
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 344788999999999888653
No 37
>PRK02391 heat shock protein HtpX; Provisional
Probab=20.40 E-value=1.1e+02 Score=28.12 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=23.4
Q ss_pred EEEEecCCCccccChHHHHHHHHHHH
Q 019889 272 FIILGCDGLWGVFGPSDAVEFVQKLL 297 (334)
Q Consensus 272 ~llL~SDGl~d~l~~~ei~~~~~~~~ 297 (334)
.+|+.|||+.+.++++|+..++...+
T Consensus 116 ~~V~vt~gLl~~L~~~El~aVlaHEl 141 (296)
T PRK02391 116 AVVCVTTGLMRRLDPDELEAVLAHEL 141 (296)
T ss_pred cEEEecHHHHhhCCHHHHHHHHHHHH
Confidence 67889999999999999999988765
Done!