BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019890
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R30|A Chain A, The Crystal Structure Of Biotin Synthase, An S-
Adenosylmethionine-dependent Radical Enzyme
pdb|1R30|B Chain B, The Crystal Structure Of Biotin Synthase, An S-
Adenosylmethionine-dependent Radical Enzyme
Length = 369
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 215 VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE 274
+A +GL+ + HN++T E + R +++ LD L +D AG + ++G GE
Sbjct: 165 LANAGLDYYNHNLDTSPEFYGNIITTRT-YQERLDTLEKVRD---AGIKVCSGGIVGLGE 220
Query: 275 T 275
T
Sbjct: 221 T 221
>pdb|3PRY|A Chain A, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
pdb|3PRY|B Chain B, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
pdb|3PRY|C Chain C, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
Length = 268
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 33/152 (21%)
Query: 182 VDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGL-----------NVFAHNIE-- 228
VD +DL S Q + LK ++ N++ + L S L F+ N++
Sbjct: 99 VDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLG 158
Query: 229 ------TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVST 282
L +R H + QS D + +YV T+ SI GE+ +QV ++
Sbjct: 159 IHEDSTNRRRLSELLRYHTS---QSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANS 215
Query: 283 --MEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 312
+E+VR G +V+ YM P+ EY
Sbjct: 216 AFVERVRKRGFEVV----YMTE-----PIDEY 238
>pdb|1MOX|A Chain A, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
pdb|1MOX|B Chain B, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
Length = 501
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 113 CPNLGECWSGGETGTATATIMILGDTCTRGCR 144
CPN G CW GE T +I C+ CR
Sbjct: 170 CPN-GSCWGAGEENCQKLTKIICAQQCSGRCR 200
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 27/108 (25%)
Query: 166 AEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAH 225
AEA+ G D +VI D GH A +RK+ E++ + L+A
Sbjct: 238 AEALFEAGADAIVI---------DTAHGHSAGVLRKIAEIRAHFPNRTLIAG-------- 280
Query: 226 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG 273
NI T E RA + +DV+ + + G++ T ++ G G
Sbjct: 281 NIATAE-------GARALYDAGVDVVKVG---IGPGSICTTRVVAGVG 318
>pdb|1YY9|A Chain A, Structure Of The Extracellular Domain Of The Epidermal
Growth Factor Receptor In Complex With The Fab Fragment
Of Cetuximab/erbitux/imc- C225
Length = 624
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 113 CPNLGECWSGGETGTATATIMILGDTCTRGCR 144
CPN G CW GE T +I C+ CR
Sbjct: 170 CPN-GSCWGAGEENCQKLTKIICAQQCSGRCR 200
>pdb|1NQL|A Chain A, Structure Of The Extracellular Domain Of Human Epidermal
Growth Factor (egf) Receptor In An Inactive (low Ph)
Complex With Egf
Length = 624
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 113 CPNLGECWSGGETGTATATIMILGDTCTRGCR 144
CPN G CW GE T +I C+ CR
Sbjct: 170 CPN-GSCWGAGEENCQKLTKIICAQQCSGRCR 200
>pdb|1IVO|A Chain A, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains.
pdb|1IVO|B Chain B, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains
Length = 622
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 110 EAKCPNLGECWSGGETGTATATIMILGDTCTRGCR 144
+ CPN G CW GE T +I C+ CR
Sbjct: 167 DPSCPN-GSCWGAGEENCQKLTKIICAQQCSGRCR 200
>pdb|3NJP|A Chain A, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
pdb|3NJP|B Chain B, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
Length = 614
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 113 CPNLGECWSGGETGTATATIMILGDTCTRGCR 144
CPN G CW GE T +I C+ CR
Sbjct: 170 CPN-GSCWGAGEENCQKLTKIICAQQCSGRCR 200
>pdb|3B2V|A Chain A, Crystal Structure Of The Extracellular Region Of The
Epidermal Growth Factor Receptor In Complex With The Fab
Fragment Of Imc-11f8
Length = 624
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 110 EAKCPNLGECWSGGETGTATATIMILGDTCTRGCR 144
+ CPN G CW GE T +I C+ CR
Sbjct: 167 DPSCPN-GSCWGAGEENCQKLTKIICAQQCSGRCR 200
>pdb|3QWQ|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Epidermal Growth Factor Receptor In Complex With An
Adnectin
Length = 648
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 110 EAKCPNLGECWSGGETGTATATIMILGDTCTRGCR 144
+ CPN G CW GE T +I C+ CR
Sbjct: 191 DPSCPN-GSCWGAGEENCQKLTKIICAQQCSGRCR 224
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 166 AEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVA 216
A+ + G+D +V+ D GH +R LKE+K M I+ +V
Sbjct: 149 AKLLVEAGVDVIVL---------DSAHGHSLNIIRTLKEIKSKMNIDVIVG 190
>pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|B Chain B, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|C Chain C, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|D Chain D, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|E Chain E, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|F Chain F, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|G Chain G, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|H Chain H, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
Length = 361
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 166 AEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVA 216
A+ + G+D +V+ D GH +R LKE+K M I+ +V
Sbjct: 110 AKLLVEAGVDVIVL---------DSAHGHSLNIIRTLKEIKSKMNIDVIVG 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,508,549
Number of Sequences: 62578
Number of extensions: 309643
Number of successful extensions: 1000
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 997
Number of HSP's gapped (non-prelim): 23
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)